Citrus Sinensis ID: 007670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
Protein Sequence
MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEIHPRSRGISEAAHQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccEEEEcccccccccccccccEEccccccccccccHHHHEEccccccccccccccccccEEccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEccccccccccEEcccccccHHHccccccccccccccccccHHHHccccccEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
MAHALKTSVNGLLNKLSDRDTYSQAAKELDSiaatvdptllpTFLSCilstnssdkpgvrkECIHVIATlsnshnlspYITKIINSITRNFRDKNSALQATCIStvsslsprvgASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATidaaqdpdagklgRMEVRLERLLKSEVFKAKAAGLVVVGSVIgsgavdgsgLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEkdavpefkgKCLKIFESKRFDKMIEAWKqvpdlseeaspppqsldpskedgsdrryltesrssstkglelkkrsilaskstppdssfpttarkrgflkkvspavlhkvdqkkpsdwrdqisapsgaslvdahedgtvlkirnnentklpkpetkralfnwssddkvhklrsgsrvtpyneesheftvsdntenlhikhkdceDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVStgrmtktnshgatccilpgadflsskfwrktegryspskfstssgtssltamnygtnkdRYAEKLKLENRRsrfqssggfivnplaeihprsrgiseaahq
Flexible Loop (DISEMBL)
MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILStnssdkpgvRKECIHVIatlsnshnlspYITKIINSITRNFRDKNSALQATCIStvsslsprVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIdaaqdpdagkLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVvekdavpefkgkcLKIFESKRFDKMIEAWKQVpdlseeaspppqsldpskedgsdrryltesrssstkglelkkrsilaskstppdssfpttarkrgflkkvspavlhkvdqkkpsdwrdqisapsgaslvdahedgtvlkirnnentklpkpetkralfnwssddkvhklrsgsrvtpyneesheftvsdntenlHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTegryspskfstssgtssltamnygtnKDRYAEKLKLENRrsrfqssggfivnplaeihprsrgiseaahq
Low Complexity Region (SEG)
MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGaalclaatidaaQDPDAGKLGRMEVRLERLLKSEVFKAKaaglvvvgsvigsgavdgsgLKGLVSCLLGFLSSQDwaarkaaaealwrlavveKDAVPEFKGKCLKIFESKRFDKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLVQIEqqqsslldllqRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTEGRYspskfstssgtssltAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEIHPRSRGISEAAHQ
Disordered region (IsUnstruct)
****************************LDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKMIEAWK**********************************************************************************************************************************************************************HIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRS***MQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRK**************************************************IV*******************
Disordered Region (DISOPRED)
***ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCI**************CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKMIEAW*******************************************************************************************************************************************************************************DLSTIRNQLVQIEQQQSSLLDL******************VLGLELALDEISY**********************PGADFL******************************************************************************
Disordered Region (DISEMBL)
MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKMIEAWKQVP**************************************LKKRSIL************TTARKRGFLKKVSPAVLHK***********QISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTE**************SSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEIHPR**********
Disordered Region (DISPRO)
*AHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKMIEAWKQVPD**********************************************************************************DWRDQI*APSG****************************K*****************************EFT**********KHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVST**********ATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSS***************KLKLENRRSRFQSSGGFIVNPLAEI*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEIHPRSRGISEAAHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	594	2.2.26 [Sep-21-2011]
F4I6M4	821	Microtubule-associated pr	no	no	0.813	0.588	0.279	4e-40
Q9T041	864	Microtubule-associated pr	no	no	0.797	0.548	0.287	6e-40

>sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1

 Score =  166 bits (421), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 148/530 (27%), Positives = 258/530 (48%), Gaps = 47/530 (8%)

Query: 5   LKTSVNGLLNKLSDRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKE 62
           LK  +   L++L DRDTY  A  +L+ I  +V   P +LP  L C+  ++S  K  V++E
Sbjct: 37  LKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPVKRE 96

Query: 63  CIHVIATLSNSH-NLS-PYITKIINSITRNFRDKNSALQATCISTVSSLSPR-------- 112
            I +++ L  S+ +LS   + KII+ I +  +D ++ ++  C   + SLS +        
Sbjct: 97  SIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEKEVE 156

Query: 113 ----VGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168
               VG+S      K L +A+  EQ+ + Q GAA+C+   ID+A +P      ++  R+ 
Sbjct: 157 NGNYVGSSLVGLFAKPLFEAM-AEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPRIS 215

Query: 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228
           +LL S  +  KA+ L VVGS+   GA+    L+ L+  +   L   +W  RKAAA+ L  
Sbjct: 216 KLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVLIS 275

Query: 229 LAVVEKDAVPEFKGKCLKIFESKRFDKM----------IEAWKQVPDLSEEASPPPQSLD 278
           LAV     V +     L   E+ RFDK+          +  WK +    E  +   Q   
Sbjct: 276 LAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMDDQKDV 335

Query: 279 PSKEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRG---FLKKVSP 335
            S++   +R   T+S S    GL ++      S S+   S      RK+      K ++P
Sbjct: 336 SSEQCILERNGETDSVSCEEAGLVMQGSCDGLSSSSDSISKAVLILRKKAPRLTGKDLNP 395

Query: 336 AVLHKVDQKKPSDWRDQISAP------SGASLVDAHEDGT-VLKIRNNENTKLPKPETKR 388
               K++++   D   ++  P      S ++  D  +  T VL+ R+N   +     TK+
Sbjct: 396 EFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDANTSVLRSRSNGLCRTAGVHTKQ 455

Query: 389 ALF-NWSSDDKVHKLRSG--SRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLV 445
             F +++ +  V +  +G  SR+  ++ +  E   +D +EN         +   ++ QL+
Sbjct: 456 RHFGDFAREKWVDERMNGGESRLRAFDGDHTEVIQADTSENRG-------NWPPLQRQLL 508

Query: 446 QIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTG 495
            +E+QQ+ ++++LQ F+G S  GM SLE RV GLE  ++E+S ++++ +G
Sbjct: 509 HLERQQTHIMNMLQDFMGGSHDGMISLENRVRGLERIVEEMSREMSIQSG 558

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T041|MAPT_ARATH Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2

 Score =  166 bits (419), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 156/543 (28%), Positives = 261/543 (48%), Gaps = 69/543 (12%)

Query: 5   LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
           LK  +   ++KL+DRDTY  A ++L+    ++ P  LP FL+C+  + S  KP V+KEC+
Sbjct: 42  LKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECL 101

Query: 65  HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS----------PR 112
           H+++ + + H  + + ++TKII  I +  +D +S ++  C  T+ +LS            
Sbjct: 102 HLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTN 161

Query: 113 VGASAFVTML--KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170
            G+++    L  K L +A+  EQ+   Q GA++C+A  +++A  P      ++  R+ +L
Sbjct: 162 TGSASLAVGLFVKPLFEAM-GEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKL 220

Query: 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230
           L +  F AKA+ L VV S+   GA+    L+ L+  +   L S DW  RKAAAE L  LA
Sbjct: 221 LSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALA 280

Query: 231 VVEKDAVPEFKGKCLKIFESKRFDKM----------IEAWKQVPDLSEEASPPPQSLDPS 280
                 + E     + + E+ RFDK+          ++ WK++     + +     L  S
Sbjct: 281 SHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSAS 340

Query: 281 KEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSS------FPTTARKRGFLKKVS 334
           ++ GS++    E RS+     +L K+      +  PDS+      FP  A   G LKK +
Sbjct: 341 EQLGSEKN--GEKRSNLA---DLMKKEASDGSTLSPDSASKGKGCFPEKA--VGLLKKKA 393

Query: 335 PAVLHKVD------QKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKR 388
           P VL   D      Q+       ++  P      D  E G            L    +  
Sbjct: 394 P-VLSDKDFNPEFFQRLERRQSVEVVVPRRCKNNDEEESGL---------DDLNAMGSSN 443

Query: 389 ALFNWSSDDKVHKLR---SGSRVTPYNEESHEFTVSDNTENLH--IKHKDCE-------- 435
            L N  +DDK  K R   +GS+     ++         T   H  + + D +        
Sbjct: 444 RLKNTQADDKQVKGRFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSN 503

Query: 436 --DLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVS 493
             + S I+ QL+Q+E+QQ++L+++LQ FIG S   M +LE RV GLE  +++++ DL++S
Sbjct: 504 RGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSIS 563

Query: 494 TGR 496
           +GR
Sbjct: 564 SGR 566

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
255540821	613	Microtubule-associated protein TORTIFOLI	0.979	0.949	0.572	1e-171
449441039	628	PREDICTED: microtubule-associated protei	0.991	0.937	0.530	1e-164
225457188	638	PREDICTED: microtubule-associated protei	0.986	0.918	0.526	1e-162
356516728	623	PREDICTED: microtubule-associated protei	0.981	0.935	0.512	1e-156
224135703	611	predicted protein [Populus trichocarpa]	0.979	0.952	0.545	1e-155
224121602	624	predicted protein [Populus trichocarpa]	1.0	0.951	0.549	1e-154
356508622	622	PREDICTED: microtubule-associated protei	0.976	0.932	0.5	1e-151
356512846	611	PREDICTED: microtubule-associated protei	0.968	0.941	0.499	1e-142
297733860	521	unnamed protein product [Vitis vinifera]	0.811	0.925	0.534	1e-133
22328012	615	ARM repeat-containing protein-like prote	0.907	0.876	0.481	1e-133

>gi|255540821|ref|XP_002511475.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis] gi|223550590|gb|EEF52077.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis]

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 358/625 (57%), Positives = 446/625 (71%), Gaps = 43/625 (6%)

Query: 1   MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGV 59
           MA  LK  V  L+ KLSDRDTY+ AA EL+SIA T++ T  L T+LSCILST+++DKP V
Sbjct: 1   MAQNLKLKVLTLITKLSDRDTYNIAAAELESIAKTLENTTQLATYLSCILSTDTTDKPLV 60

Query: 60  RKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117
           RK+C+ ++  LS  H   LS  + KI+  ITR  RD +S+++  C++TVSSL+ ++    
Sbjct: 61  RKQCLCLLTALSIHHANYLSASLPKILVYITRRLRDHDSSIRTQCVATVSSLASKITKLP 120

Query: 118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEV 175
           F T  LK LS+A+FTEQ+ NAQ+G+ALCLAA I+AA DP+AG+LG+ + VR+ERLLKSE 
Sbjct: 121 FSTAFLKPLSEAVFTEQEMNAQIGSALCLAAAINAAPDPEAGRLGKALVVRMERLLKSEG 180

Query: 176 FKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234
           +KAK+AGLVV+GSVIG G V D  G+ GLV CL+GFLSS DWAARKAAAEAL RLAVVE+
Sbjct: 181 YKAKSAGLVVIGSVIGVGGVRDYGGIGGLVKCLVGFLSSDDWAARKAAAEALERLAVVER 240

Query: 235 DAVPEFKGKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSLDPSKEDG 284
           D V EFK  CLKIFES++FDK          MIEAWKQVPD+SE+ SPPP+SL  SKED 
Sbjct: 241 DDVAEFKCWCLKIFESRKFDKVKAAREVMHQMIEAWKQVPDVSEDVSPPPRSLASSKEDA 300

Query: 285 SDRRYLTESRSSSTKGLE---LKKRSILASKSTPPDSSFPTTARKRGFLK----KVSPAV 337
           SD RY   S++S   G +   ++K+  LAS++TPPD S  T  R+RG LK    K S A+
Sbjct: 301 SDGRYPLSSKNSCAAGFQTPQMRKKPALASRTTPPDDSAATFTRRRGSLKSTEKKTSSAL 360

Query: 338 LHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENT---KLPKPETKRALFNWS 394
             KVD KKP DW+  ++ P+  +        T+ ++ +NEN    +  KPET+RALF  S
Sbjct: 361 FRKVDCKKPFDWKVDVAIPNNTT--------TLAEVVDNENAPERRSIKPETRRALFGKS 412

Query: 395 SDDKVHKL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQ 449
           SDDK+ K    +SGSRV P +EES   T   S+ TEN H  HK+CEDLS+IRNQLVQIE+
Sbjct: 413 SDDKMLKFSGCKSGSRVVPCHEESPVSTAVASNVTENHHSNHKECEDLSSIRNQLVQIER 472

Query: 450 QQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCI 509
           QQSSLLDLLQRF+G S++GMQSLETRV GLELALDEISYDLAVS+GRM  TNS+  TCC+
Sbjct: 473 QQSSLLDLLQRFMGSSQNGMQSLETRVHGLELALDEISYDLAVSSGRM--TNSNRTTCCL 530

Query: 510 LPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQS 569
           LPGADFLSSKFWRKTE R+S S+ S+ + T   + M +   K    E L LE+RR   Q 
Sbjct: 531 LPGADFLSSKFWRKTESRHSASRLSSGT-TPPFSVMRHKDGKPDSLEMLNLESRRLLLQG 589

Query: 570 SGGFIVNPLAEIHPRSRGISEAAHQ 594
            GGFIVNPLAEIH  SRG+SE A  
Sbjct: 590 GGGFIVNPLAEIH-ESRGLSEGAQH 613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441039|ref|XP_004138291.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus] gi|449477623|ref|XP_004155074.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus]

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 330/622 (53%), Positives = 420/622 (67%), Gaps = 33/622 (5%)

Query: 3   HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKE 62
            +LK  +   L KLSDRDTYS AA EL+SIA  +D + LP FLSCI ST++SDK  VRK+
Sbjct: 9   QSLKLRILSCLTKLSDRDTYSLAASELESIAQNLDGSTLPIFLSCIYSTDASDKLLVRKQ 68

Query: 63  CIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120
           CI + A +S  H  +L+PY++KI+++ITR FRD +S++++ C+S+V++L+  V    F T
Sbjct: 69  CIRLFAVVSEIHGNSLAPYLSKILSNITRRFRDPDSSVRSACVSSVTALASGVTKPPFST 128

Query: 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180
            LK L+D+LFTEQD+N+QVGAALCLA+ IDAA DPD  K+G++  R E+LLK E FKAK 
Sbjct: 129 FLKPLTDSLFTEQDSNSQVGAALCLASAIDAAPDPDPVKIGKLLPRFEKLLKCESFKAKP 188

Query: 181 AGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE 239
           A L ++GSVIG  GA+    LK LV CL+ FLSS+DWAARK+AAEAL +LAVVE+DA+ E
Sbjct: 189 ALLTLIGSVIGVDGALGNGALKNLVPCLVAFLSSEDWAARKSAAEALGKLAVVERDALAE 248

Query: 240 FKGKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRY 289
           FK  CLK  ES+RFDK          M+EAWKQ+PDLS+EAS P  S   SKE  SD RY
Sbjct: 249 FKAGCLKTLESRRFDKVKAVREVMSQMLEAWKQIPDLSDEASAPAYSQSSSKEIVSDGRY 308

Query: 290 LTESRSSSTKGLEL---KKRSILASKSTPPDSSFPTTARKRGFL----KKVSPAVLHKVD 342
               +++S+  L+    +K  I A +STPPD+S  T AR+R  L    KK S ++L K +
Sbjct: 309 PPGFKNNSSARLDAPLPRKNVISAYRSTPPDASPATAARRRSSLSGGDKKASLSMLQKAE 368

Query: 343 QKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHK- 401
           +KKP DW+ ++S     S      D  +   R +E TK+ KPETKRALFN  SDDK  K 
Sbjct: 369 RKKPLDWKVEVSVRKSPSGELKERDENIPDRRFSEKTKISKPETKRALFNKISDDKTIKF 428

Query: 402 --LRSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDL 457
             LRSGSRV P  E+  E TV  S  T++LH  HKD E+L  IRNQL QIE+QQSSLLD+
Sbjct: 429 GGLRSGSRVVPCPEDFPESTVVASSATDDLHRNHKDSEELHLIRNQLSQIEKQQSSLLDI 488

Query: 458 LQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLS 517
           LQ FIG S++GM+SLETRV GLELALDEISYDLAVS+GRM+  N+   TCC+LPGADFLS
Sbjct: 489 LQNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLS 548

Query: 518 SKFWRKTEGRYSPSKFSTSSGTSSLTAM------NYGTNKDRYAEKLKLENRRSRFQSSG 571
           S+FW++ E R+S SKFST    + L  +       +GTN D       LEN R   Q  G
Sbjct: 549 SRFWKRAESRHSTSKFSTPIRATPLAPIRSRSGDRHGTNVD--VGSTNLENHRFHIQRRG 606

Query: 572 GFIVNPLAEIHPRSRGISEAAH 593
           GF+VNPLA      R  S+  H
Sbjct: 607 GFMVNPLAVRQSEPRAASDVTH 628

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457188|ref|XP_002280600.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera]

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 325/617 (52%), Positives = 426/617 (69%), Gaps = 31/617 (5%)

Query: 5   LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
           LK  V   L KLSDRDT S AA EL+SIA T+   LLP FLSCI  T+ SDK  VRK+C+
Sbjct: 12  LKHRVFTCLTKLSDRDTQSIAATELESIARTLTQDLLPPFLSCIHQTDPSDKSPVRKQCV 71

Query: 65  HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
            ++  LS +H   LSP+++K+++++ R  RD +SA+++TCI+ +S++S  +    F +++
Sbjct: 72  RLLGILSETHGDALSPFLSKMLSNLIRRLRDPDSAVRSTCINAISAMSSHITKPPFSSIV 131

Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAG 182
           K L++ LFTEQD NAQ+GA+LCLA+ IDAA DPD   L R+  R+E+LLK + FKAK A 
Sbjct: 132 KPLAETLFTEQDHNAQIGASLCLASAIDAAPDPDPALLRRLLPRIEKLLKCDSFKAKPAV 191

Query: 183 LVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK 241
           L ++GS++   GA   + +K LV C +GFLSS+DWAARKAAAE L +LAV+E+D + EFK
Sbjct: 192 LTLIGSIVEAGGATSYNVVKNLVPCAVGFLSSEDWAARKAAAEVLVKLAVMERDMLSEFK 251

Query: 242 GKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLT 291
             CLK FE++RFDK          M+ AWK++PD+S + SPPPQS   SKE+ SD RY  
Sbjct: 252 SSCLKTFEARRFDKVKAVRDTMNQMLGAWKEIPDVSNDVSPPPQSQSSSKENASDGRYPL 311

Query: 292 ESRSSSTKGLE---LKKRSILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKKPSD 348
           ESR+S T G E   ++K+SI  S S   +SS  TT R+RG + K   A+  K+++KK SD
Sbjct: 312 ESRNSCTGGSEVPLMRKKSIPTSISPQLNSSSATTVRRRGPVDKSGSAMFRKLERKKASD 371

Query: 349 WRDQISAPSGASLVDAHEDGTVLKIRN--------NENTKLPKPETKRALFNWSSDDKVH 400
            + +++AP   S++  HEDG  LK ++        NE  +  KPET+R LF  +SDDK++
Sbjct: 372 LKVEVTAPHAPSVMRIHEDG--LKKKDEKAPERGENEKNRFTKPETRRVLFTKNSDDKMN 429

Query: 401 KL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLL 455
           K    RSGSRV P  EE+ E TV  S+ TE  H  HK+CEDLS IR QLVQIE QQSSLL
Sbjct: 430 KFGGFRSGSRVVPCQEENSETTVEVSNTTEVPHRNHKECEDLSLIRKQLVQIENQQSSLL 489

Query: 456 DLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADF 515
           +LL++F+G S++G++SLETRV GLELALDEIS+DLAVS  RM+ T++ GATCC+LPGADF
Sbjct: 490 NLLEKFMGSSQNGLRSLETRVHGLELALDEISFDLAVSNRRMSSTDTAGATCCMLPGADF 549

Query: 516 LSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIV 575
           LSSKFWRKTEGR S S+FS S  T S TAM Y   K+  A   K EN R R Q  GGF+V
Sbjct: 550 LSSKFWRKTEGRGSTSRFSPSHATQSGTAMRYIAGKNDNAGTFKSENLRFRLQGGGGFVV 609

Query: 576 NPLAEIHPRSRGISEAA 592
           NPLAEI   SR ISE +
Sbjct: 610 NPLAEIPSDSRDISEVS 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516728|ref|XP_003527045.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like isoform 1 [Glycine max] gi|356516730|ref|XP_003527046.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like isoform 2 [Glycine max]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 313/611 (51%), Positives = 419/611 (68%), Gaps = 28/611 (4%)

Query: 5   LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
           +K  V   L KLSDRDT +  A EL+SIA T+DP  +P FLSCI ST+SSDK  VRK+C+
Sbjct: 13  IKQRVLTCLTKLSDRDTQAAGATELESIARTIDPHSVPVFLSCIHSTDSSDKTPVRKQCV 72

Query: 65  HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M 121
           H++ATLS++H   LSP+++KII  + R  RD +S+++A C  +V +LS  V    F    
Sbjct: 73  HLVATLSHAHGDALSPFLSKIIACLVRRLRDPDSSVRAACADSVGALSACVTRQPFAAAF 132

Query: 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAA 181
           LK L++ALFTEQD ++Q GAALCLA+ ++AA DPD  +L R+  RLERL+KS+VF+AK A
Sbjct: 133 LKPLAEALFTEQDPSSQAGAALCLASAVEAAPDPDPARLARLLPRLERLIKSKVFRAKPA 192

Query: 182 GLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240
            LV+VGSV+   GA  G  LK LV CL+  L S+DWA RK AAEAL +LA VEKD +PEF
Sbjct: 193 LLVLVGSVVEARGASSGVALKNLVPCLVEALGSEDWATRKGAAEALKKLASVEKDLLPEF 252

Query: 241 KGKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYL 290
           KG CLK+FE++RFDK          M+EAWKQ+PD+S+E SPPPQS   SKE+ SD RY 
Sbjct: 253 KGGCLKVFENRRFDKVKLVREVMNEMLEAWKQIPDVSDEFSPPPQSQLSSKENASDGRYP 312

Query: 291 TESRSSSTKGL---ELKKRSILASKSTPPDSSFPTTARKRGFL-KKVSPAVLHKVDQKKP 346
             S++S + G    +L+K+S   SKSTPPD+S    A++      ++S  VL K++    
Sbjct: 313 PVSQNSCSPGSVMSKLRKKSSQVSKSTPPDTSAVRNAKRSALSGDRMSSGVLQKLNH--- 369

Query: 347 SDWRDQISAPSGASLVDAHE-DGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKL--- 402
           + W  +I+  + +   +  + D  VL+ R  + ++  KPETKRALF+ +SDDK+HK    
Sbjct: 370 NHWDVRIAVSNVSDCGERQQKDEDVLERRKKDRSRFFKPETKRALFDKNSDDKMHKFGGS 429

Query: 403 RSGSRVTPYNEESHEF-TVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRF 461
           ++GSRV P +EES +   V + T++LH   K+ E+LS IR QLVQIE+QQSSLLDL+Q+F
Sbjct: 430 KAGSRVVPCSEESQDSDPVCNVTKDLHRNDKESEELSLIRAQLVQIEKQQSSLLDLVQKF 489

Query: 462 IGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFW 521
           +G SE+GM++LETRV GLELALDEISYDLAVS+GR+TK ++   TCC+LPGA+FLSSKFW
Sbjct: 490 MGSSENGMRTLETRVHGLELALDEISYDLAVSSGRITKFDAPKHTCCMLPGAEFLSSKFW 549

Query: 522 RKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEI 581
           +KT+GRYS  +FS +  T  L + +Y  N  R AE  +  + R      GGF  NPLAEI
Sbjct: 550 KKTQGRYSSYRFSRTGSTPLLPSSHYRAN--RNAESNRSTSHRLGVHGDGGFTTNPLAEI 607

Query: 582 HPRSRGISEAA 592
              SR IS +A
Sbjct: 608 KINSREISGSA 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135703|ref|XP_002322140.1| predicted protein [Populus trichocarpa] gi|222869136|gb|EEF06267.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 340/623 (54%), Positives = 436/623 (69%), Gaps = 41/623 (6%)

Query: 1   MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVR 60
           MA  LK  V  L+ KLSDRDTY  A+ EL+ IA ++D T LPTFLSCILST+++DKP VR
Sbjct: 1   MAQKLKLKVLTLITKLSDRDTYKIASTELEKIAGSLDSTTLPTFLSCILSTDANDKPLVR 60

Query: 61  KECIHVIATLS--NSHNLSPYITKIINSITRNFRDKNSA-LQATCISTVSSLSPRVGASA 117
           K+C+H+++TLS   S++LS  + KI++ ITR  RD +S+ +++ C++ ++SL+  V    
Sbjct: 61  KQCLHLLSTLSALYSNSLSNSLPKILSYITRRLRDPDSSVIRSQCLTAITSLASNVTKLP 120

Query: 118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERLLKSEV 175
           F T  LK LS+++FTEQ+ NAQ+G+ALCLAA IDAA DP+ G+LG+M V R+ERL++SE 
Sbjct: 121 FSTAFLKQLSESVFTEQELNAQIGSALCLAAAIDAAPDPEPGRLGKMLVPRMERLVRSEG 180

Query: 176 FKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233
           +KA+ AGLVVVGSVIG G   G G     LV CL+GFLSS+DW +RKAAAEAL +LAVVE
Sbjct: 181 YKARFAGLVVVGSVIGVGGARGIGGGIGGLVKCLVGFLSSEDWNSRKAAAEALRKLAVVE 240

Query: 234 KDAVPEFKGKCLKIFESKRFDKM----------IEAWKQVPDLSEEASPPPQSLDPSKED 283
           +D V EFK +CLK+FE++RFDK+          IEAWKQVPD+SEEASPPP+SL  S+ED
Sbjct: 241 RDGVAEFKSECLKVFENRRFDKVKAAREVMNETIEAWKQVPDVSEEASPPPRSLASSRED 300

Query: 284 GSDRRYLTESRSSSTKGLE---LKKRSILASKSTPPDSSFPTTARKRGFLK----KVSPA 336
            SD+R+ + S++S   G E   + K+SILA ++TPPD S   TARKR  LK    K S A
Sbjct: 301 ASDKRHWSGSKNSCAAGSEATQMGKKSILAMRTTPPDGSLAATARKRSPLKSTEKKTSLA 360

Query: 337 VLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSD 396
           +  KVDQKK  DW+ +IS P+  S   A E+      RN +N  + +          +SD
Sbjct: 361 MYGKVDQKKLVDWKVEISVPNSISSTAAGEND-----RNEKNANVSERSK-------NSD 408

Query: 397 DKVHKL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQQ 451
           +K  K    +SGSRV P  EES + TV  S  TEN H  HK+ EDLS IRNQLVQIE+QQ
Sbjct: 409 EKTLKFGGFKSGSRVAPCYEESPQSTVVASSGTENQHSNHKEPEDLSLIRNQLVQIERQQ 468

Query: 452 SSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILP 511
           SSLLDLLQ FIG S++GM+SLETRV GLELALDEISYDLAVS+  MT  +S+  TCC+LP
Sbjct: 469 SSLLDLLQSFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSRGMTNRDSNRTTCCLLP 528

Query: 512 GADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSG 571
           GADFLSSKFWRKT+GRYS S+ S+S GTS   A+ +  +++  +E   L N+R R Q   
Sbjct: 529 GADFLSSKFWRKTDGRYSNSRISSSRGTSLSAAVRHRADRNGQSETSNLGNQRLRLQGGA 588

Query: 572 GFIVNPLAEIHPRSRGISEAAHQ 594
           GFIVNPLAEIH  +R  SE    
Sbjct: 589 GFIVNPLAEIHGGARVNSEVTQH 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121602|ref|XP_002318624.1| predicted protein [Populus trichocarpa] gi|222859297|gb|EEE96844.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/624 (54%), Positives = 443/624 (70%), Gaps = 30/624 (4%)

Query: 1   MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVR 60
           MA  LK  V  L+ KLSDRDTY+ A++E++ IA ++D T L TFLSCILST+S+DKP VR
Sbjct: 1   MAQKLKLKVLTLITKLSDRDTYAIASREIEGIAESLDNTTLSTFLSCILSTDSTDKPLVR 60

Query: 61  KECIHVIATLSN--SHNLSPYITKIINSITRNFRDKNSAL-QATCISTVSSLSPRVGASA 117
           K C+H+++TLS+  S++L+  + KI++ ITR  RD +S++ ++ C++ ++SL+ ++    
Sbjct: 61  KHCLHLLSTLSHLYSNSLASSLPKILSYITRRLRDPDSSITRSQCLTAMTSLASKITKVP 120

Query: 118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERLLKSEV 175
           F T  LK LS+++FTEQ+ NAQ+G+ALCLAA IDAA DP+ G+LG++ + RLERL+KSE 
Sbjct: 121 FSTAFLKQLSESVFTEQELNAQIGSALCLAAAIDAAPDPEPGRLGKVLLPRLERLVKSEG 180

Query: 176 FKAKAAGLVVVGSVIGSGAVDGSGLKGLVS--CLLGFLSSQDWAARKAAAEALWRLAVVE 233
           +KAK AGLVVVGSVIG G V G+G        CL+GFLS++DW +RKAAAEAL +LAVVE
Sbjct: 181 YKAKFAGLVVVGSVIGVGGVRGTGGGTGGLVKCLVGFLSTEDWNSRKAAAEALRKLAVVE 240

Query: 234 KDAVPEFKGKCLKIFESKRFDKM----------IEAWKQVPDLSEEASPPPQSLDPSKED 283
           +D V EFK +CLK+FES+R+DK+          IEAWKQVPD+SEE SPPP+SL  S+ED
Sbjct: 241 RDGVAEFKSECLKVFESRRYDKVKAAREVMNETIEAWKQVPDVSEEESPPPRSLASSRED 300

Query: 284 GSDRRYLTESRSSSTKGLE---LKKRSILASKSTPPDSSF-PTTARKRGFLKKV----SP 335
            SD R+ + S+     G E   + K+SIL  K+TPPDSS   TTARKRG LK      +P
Sbjct: 301 ASDGRHGSGSKKLHLAGSEAPQMMKKSILDFKNTPPDSSLIATTARKRGPLKSTDEGTNP 360

Query: 336 AVLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSS 395
           A+  KVDQKK  DW+ +IS P+  S   A E+   +K       +  K ETKR+LF+ +S
Sbjct: 361 AMYGKVDQKKMVDWKVEISVPNSISSTAAGENDLKMKNAKVPEKRFAKAETKRSLFSKNS 420

Query: 396 DDKVHKL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQ 450
           DDK  K    +SGSRV P +EES   TV  S  TEN H  H +CEDLS IR QLVQIE+Q
Sbjct: 421 DDKKLKFGGFKSGSRVAPCHEESPHSTVVASSGTENHHSNHNECEDLSLIRFQLVQIERQ 480

Query: 451 QSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCIL 510
           QSSLLDLLQ FIG S++GM SLETRV GLELALDEISYDLAVS+GRMT T+S+  TCC+L
Sbjct: 481 QSSLLDLLQSFIGSSQNGMHSLETRVRGLELALDEISYDLAVSSGRMTNTDSNRTTCCLL 540

Query: 511 PGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSS 570
           PGADFLSSKFW+KTEGRYS S+  +S GT     + +  +++ ++E + L N+R R Q  
Sbjct: 541 PGADFLSSKFWKKTEGRYSNSRIYSSRGTPLSAVVRHRADRNGHSETINLGNQRLRLQGG 600

Query: 571 GGFIVNPLAEIHPRSRGISEAAHQ 594
           GG IVNPLAEIH  SR  SE   Q
Sbjct: 601 GGLIVNPLAEIHGGSRLNSEVTQQ 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508622|ref|XP_003523054.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Glycine max]

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 307/614 (50%), Positives = 415/614 (67%), Gaps = 34/614 (5%)

Query: 5   LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
           +K  V   L KLSDRDT    A EL+SIA T+DP  +P FLSCI ST++SDK  VRK+C+
Sbjct: 12  IKQRVLTCLTKLSDRDTQVAGANELESIARTLDPHSVPVFLSCIHSTDASDKTPVRKQCV 71

Query: 65  HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M 121
           H++ATLS++H   LSP+++KI+  + R  RD +S+++A C  +V +LS RV    F    
Sbjct: 72  HLVATLSHAHGDALSPFLSKILACLVRRLRDPDSSIRAACADSVGALSARVTRQPFAAAF 131

Query: 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAA 181
           LK L++ALFTEQD ++Q GAALCLA+ I+AA DPD  +L R+  RLERL+KS+VF+AK A
Sbjct: 132 LKPLAEALFTEQDPSSQAGAALCLASAIEAAPDPDPARLARLLPRLERLIKSKVFRAKPA 191

Query: 182 GLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240
            L +VGSV+   GA  G+ L+ LV CLL  L S+DWA RK AAEAL +LA VE+D + EF
Sbjct: 192 LLALVGSVVEARGATSGAALRSLVPCLLEALGSEDWATRKGAAEALKKLASVERDLLAEF 251

Query: 241 KGKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYL 290
           KG CLK+FE +RFDK          M+EAWK +PD+S+E SPPPQ    SKE+ SD RY 
Sbjct: 252 KGGCLKVFEDRRFDKVKLVREVMNQMLEAWKHIPDVSDEFSPPPQLQLSSKENASDGRYP 311

Query: 291 TESRSSSTKGL---ELKKRSILASKSTPPDSSFPTTARKRGFL-KKVSPAVLHKVDQKKP 346
             S++S + G    +L+K+S  ASKSTPPD S    A+K      ++   VL K++    
Sbjct: 312 PVSQNSCSPGSVMSKLRKKSSPASKSTPPDRSAVRNAKKSALSGDRMGSGVLQKLNH--- 368

Query: 347 SDWRDQISAPSGASLVDAHE----DGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKL 402
           + W  +I+    +++ D  E    D  VL+    + ++  K ETKRALF+ +SDDK+HK 
Sbjct: 369 NHWDVRIAV---SNVPDRGERRQKDEDVLERSKKDKSRFFKQETKRALFDKNSDDKMHKS 425

Query: 403 ---RSGSRVTPYNEESHEF-TVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLL 458
              ++GSRV P +EES +   V + T++LH   K+ E+LS IR QLVQIE+QQSSLLDL+
Sbjct: 426 GGSKAGSRVVPCSEESQDSGPVCNVTKDLHRNDKESEELSLIRAQLVQIEKQQSSLLDLV 485

Query: 459 QRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSS 518
           Q+F+G SE+GM +LETRV GLELALDEISYDLAVS+GR++K+++   TCC+LPGA+FLS+
Sbjct: 486 QKFMGNSENGMHTLETRVHGLELALDEISYDLAVSSGRISKSDAPKNTCCLLPGAEFLST 545

Query: 519 KFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPL 578
           KFW+KT+GRYS  +FS +  T  L + +Y  N  R A+  +L + R R    G F+ NPL
Sbjct: 546 KFWKKTQGRYSSYRFSRTGSTPLLASSHYRAN--RNAKSNRLASHRFRVHGDGSFMTNPL 603

Query: 579 AEIHPRSRGISEAA 592
           AEI   SR IS +A
Sbjct: 604 AEIKINSREISGSA 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512846|ref|XP_003525126.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Glycine max]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 304/609 (49%), Positives = 410/609 (67%), Gaps = 34/609 (5%)

Query: 5   LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
           +K  V   L KLSDRDT S AA EL+SIA  +D T LP FLSC+ ST++SDKP VRK+C+
Sbjct: 8   IKQRVFTCLTKLSDRDTQSLAAAELESIARNLDATTLPAFLSCMYSTDASDKPPVRKQCV 67

Query: 65  HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
           H++  L+ +H   L+PY++KI+ S+ R  RD +S++++ C++++++LS  V      + L
Sbjct: 68  HLLGFLAQTHGNMLAPYLSKILGSVVRRLRDVDSSVRSACVNSIAALSGHVSKQPLNSFL 127

Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAG 182
           K L++ALFTEQD NAQ  AALCLA+ ID A DPD  +L ++  R E+LLK + FKAK A 
Sbjct: 128 KPLAEALFTEQDQNAQASAALCLASAIDGAPDPDPARLAKLLPRFEKLLKRDGFKAKPAL 187

Query: 183 LVVVGSVIGSGAVDGSG-LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK 241
           L +VGSV+ +G   G   LK LV CL+  LS+ DWA RKAAAE L  +A VE+D + EFK
Sbjct: 188 LTLVGSVVAAGGASGHAQLKSLVPCLVEALSNDDWATRKAAAETLVVVADVERDFLSEFK 247

Query: 242 GKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLT 291
           G+C+++FE++RFDK          M+EAWK VPD+S+E SPPP+S   SKE+ SD RY  
Sbjct: 248 GECVRVFENRRFDKVKLVRDVMNQMLEAWKLVPDVSDEVSPPPKSQSSSKENASDGRYPQ 307

Query: 292 ESRSS-STKGL--ELKKRSILASKSTPPDSSFPTTARKRG---FLKKVSPAVLHKVDQKK 345
            S++S S + +   L+++S   S+ +P DSS  + A+        K++S +V  K++ K 
Sbjct: 308 VSQNSCSPRSMMANLRRKSTPFSRFSPADSSSASNAKNTSASSSNKRMSSSVSRKLNHK- 366

Query: 346 PSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKL--- 402
             +W  QI+      L +   DG V +    + + + KPETKRAL N SS+DK+ K    
Sbjct: 367 --NWDAQIAVADQGDLQE--RDGIVSERSKMDKSGVSKPETKRALLNKSSEDKIQKYGGS 422

Query: 403 RSGSRVTPYNEESHE--FTVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQR 460
           ++GSRV PY E+  +    VS  +++L    K+ EDLS IR+QL QIE QQSSLLDLLQ+
Sbjct: 423 KAGSRVVPYQEDESQDSVPVSIVSKDLQRNDKESEDLSLIRDQLHQIENQQSSLLDLLQK 482

Query: 461 FIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKF 520
           F+G S++GM+SLETRV GLELALDEISYDLA+S+GRMTK + HG TCC+LPGA+FLSSKF
Sbjct: 483 FMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKPDPHGNTCCMLPGAEFLSSKF 542

Query: 521 WRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAE 580
           WRKT GR S ++FS S GT SL AMNY  N+D    + KL N   RF+  GGFI NPLAE
Sbjct: 543 WRKTHGRDSITRFSRSGGTPSLAAMNYQANRD---AETKLANH--RFRPDGGFITNPLAE 597

Query: 581 IHPRSRGIS 589
           IH  SR  +
Sbjct: 598 IHTNSRNFA 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733860|emb|CBI15107.3| unnamed protein product [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/511 (53%), Positives = 351/511 (68%), Gaps = 29/511 (5%)

Query: 109 LSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168
           +S  +    F +++K L++ LFTEQD NAQ+GA+LCLA+ IDAA DPD   L R+  R+E
Sbjct: 1   MSSHITKPPFSSIVKPLAETLFTEQDHNAQIGASLCLASAIDAAPDPDPALLRRLLPRIE 60

Query: 169 RLLKSEVFKAKAAGLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALW 227
           +LLK + FKAK A L ++GS++   GA   + +K LV C +GFLSS+DWAARKAAAE L 
Sbjct: 61  KLLKCDSFKAKPAVLTLIGSIVEAGGATSYNVVKNLVPCAVGFLSSEDWAARKAAAEVLV 120

Query: 228 RLAVVEKDAVPEFKGKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSL 277
           +LAV+E+D + EFK  CLK FE++RFDK          M+ AWK++PD+S + SPPPQS 
Sbjct: 121 KLAVMERDMLSEFKSSCLKTFEARRFDKVKAVRDTMNQMLGAWKEIPDVSNDVSPPPQSQ 180

Query: 278 DPSKEDGSDRRYLTESRSSSTKGLE---LKKRSILASKSTPPDSSFPTTARKRGFLKKVS 334
             SKE+ SD RY  ESR+S T G E   ++K+SI  S S   +SS  TT R+RG + K  
Sbjct: 181 SSSKENASDGRYPLESRNSCTGGSEVPLMRKKSIPTSISPQLNSSSATTVRRRGPVDKSG 240

Query: 335 PAVLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRN--------NENTKLPKPET 386
            A+  K+++KK SD + +++AP   S++  HEDG  LK ++        NE  +  KPET
Sbjct: 241 SAMFRKLERKKASDLKVEVTAPHAPSVMRIHEDG--LKKKDEKAPERGENEKNRFTKPET 298

Query: 387 KRALFNWSSDDKVHKL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIR 441
           +R LF  +SDDK++K    RSGSRV P  EE+ E TV  S+ TE  H  HK+CEDLS IR
Sbjct: 299 RRVLFTKNSDDKMNKFGGFRSGSRVVPCQEENSETTVEVSNTTEVPHRNHKECEDLSLIR 358

Query: 442 NQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTN 501
            QLVQIE QQSSLL+LL++F+G S++G++SLETRV GLELALDEIS+DLAVS  RM+ T+
Sbjct: 359 KQLVQIENQQSSLLNLLEKFMGSSQNGLRSLETRVHGLELALDEISFDLAVSNRRMSSTD 418

Query: 502 SHGATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLE 561
           + GATCC+LPGADFLSSKFWRKTEGR S S+FS S  T S TAM Y   K+  A   K E
Sbjct: 419 TAGATCCMLPGADFLSSKFWRKTEGRGSTSRFSPSHATQSGTAMRYIAGKNDNAGTFKSE 478

Query: 562 NRRSRFQSSGGFIVNPLAEIHPRSRGISEAA 592
           N R R Q  GGF+VNPLAEI   SR ISE +
Sbjct: 479 NLRFRLQGGGGFVVNPLAEIPSDSRDISEVS 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328012|ref|NP_201064.2| ARM repeat-containing protein-like protein [Arabidopsis thaliana] gi|38564286|gb|AAR23722.1| At5g62580 [Arabidopsis thaliana] gi|332010245|gb|AED97628.1| ARM repeat-containing protein-like protein [Arabidopsis thaliana]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 298/619 (48%), Positives = 394/619 (63%), Gaps = 80/619 (12%)

Query: 6   KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRK 61
           K +++ LL KL DRDT++ AA+ELD +A  +DP+     L +F+S ILS ++ DKP VRK
Sbjct: 7   KQNMSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGDKPAVRK 66

Query: 62  ECIHVIATLSNS---HNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118
            CIH++A LS S   ++LSP+++KI+  ITR  RD +S++++TC++ VS++S R     F
Sbjct: 67  HCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISSRTTKPPF 126

Query: 119 VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERLLKSEVF 176
            +  +K L+D LFTEQ+ NAQ+GAALCLAA ID+A DPD  +LG+  + RLE+L+K   F
Sbjct: 127 YSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLLPRLEKLVKCNAF 186

Query: 177 KAKAAGLVVVGSVIGSGAVDGS-----GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231
           KAK+AG+VV+GSVIG+G + G+     GLKGLV CLL FL S+DWAARKAAAEAL RLA 
Sbjct: 187 KAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAARKAAAEALGRLAT 246

Query: 232 VEKDAVPEFKGKCLKIFESKRFDK----------MIEAWKQVPDLSEEASPPPQSLDPSK 281
           +E++ + EFK KCLKIFES+++DK          M+EAWKQVPDLSEE SPP +S   SK
Sbjct: 247 MERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVPDLSEEVSPP-RSNASSK 305

Query: 282 EDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVS------P 335
            D SD RY + SR  ST     K R+ L ++STPP SS  TTARK+   K +        
Sbjct: 306 GDASDGRYPSGSRVGSTPA---KSRTHLVNRSTPPGSSLATTARKQANRKSIDQKKTSLT 362

Query: 336 AVLHKVDQKKPSDWR-DQISAPSGASLVD-AHEDGTVLKIRNNENTKLPKPETKRALFNW 393
           A L K + ++  +W+    S P+G SL D  H D       ++EN K    ET       
Sbjct: 363 ASLTKPNVRRRLEWKAGGASIPTGVSLEDEQHCD-------HDENAK----ETSH----- 406

Query: 394 SSDDKVHKLRSGS-----RVTPYNEE----SHEFTVSDNTENLHIKHKDCEDLSTIRNQL 444
           SS + V KL   S      + P         H  + + N+ N     K  ED+S IRNQL
Sbjct: 407 SSHNTVQKLGGVSSSLNGNIPPSGATMVTGHHVLSENPNSNNC----KGLEDISLIRNQL 462

Query: 445 VQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHG 504
           VQIEQQQ++L+DLLQRF+G S+ GM+ LETRV GLELALDEISYDLAVS GRM+  +S  
Sbjct: 463 VQIEQQQANLMDLLQRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMSNGSSRN 522

Query: 505 ATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRR 564
             CC+LP   F+ SKFW+K + +YS S+ ST               ++R AE  +++N R
Sbjct: 523 -NCCLLPSGSFIKSKFWKKHDSKYSASRMSTY--------------RNRNAETTEIQNSR 567

Query: 565 SRFQSSGGFIVNPLAEIHP 583
            RF  S GFIVNPLAEI P
Sbjct: 568 HRFNGSPGFIVNPLAEIRP 586

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
TAIR|locus:2154144	615	AT5G62580 [Arabidopsis thalian	0.883	0.853	0.395	2.2e-89
TAIR|locus:2205739	625	AT1G27210 [Arabidopsis thalian	0.865	0.822	0.327	2.1e-61
TAIR|locus:2025906	498	AT1G59850 "AT1G59850" [Arabido	0.513	0.612	0.301	5.8e-34
TAIR|locus:2060161	820	AT2G07170 [Arabidopsis thalian	0.629	0.456	0.254	1.1e-23
TAIR|locus:2136467	864	TOR1 "TORTIFOLIA 1" [Arabidops	0.553	0.380	0.254	8.4e-17
TAIR|locus:2036411	821	AT1G50890 "AT1G50890" [Arabido	0.422	0.305	0.231	4.6e-09

TAIR|locus:2154144 AT5G62580 [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 232/586 (39%), Positives = 316/586 (53%)

Query:    26 AKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---HNLSPYITK 82
             A+++D  +++ +   L +F+S ILS ++ DKP VRK CIH++A LS S   ++LSP+++K
Sbjct:    34 ARQIDPSSSSGN---LQSFISVILSVDTGDKPAVRKHCIHLLAVLSVSLPLNSLSPFLSK 90

Query:    83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGX 141
             I+  ITR  RD +S++++TC++ VS++S R     F +  +K L+D LFTEQ+ NAQ+G 
Sbjct:    91 ILTRITRRLRDPDSSIRSTCVAAVSAISSRTTKPPFYSAFMKPLADTLFTEQEVNAQIGA 150

Query:   142 XXXXXXXXXXXQDPDAGKLGRMEV-RLERLLKSEVFKAKXXX-----XXXXXXXXXXXXX 195
                         DPD  +LG+  + RLE+L+K   FKAK                     
Sbjct:   151 ALCLAAAIDSASDPDPVRLGQTLLPRLEKLVKCNAFKAKSAGVVVIGSVIGAGGLSGTSV 210

Query:   196 XXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXXXXXKDAVPEFKGKCLKIFESKRFDK 255
                 LKGLV CLL FL S+D                  ++ + EFK KCLKIFES+++DK
Sbjct:   211 SSGGLKGLVDCLLSFLVSEDWAARKAAAEALGRLATMERNELGEFKAKCLKIFESRKYDK 270

Query:   256 ----------MIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLTESRSSSTKGLELKK 305
                       M+EAWKQVPDLSEE SPP +S   SK D SD RY + SR  ST     K 
Sbjct:   271 VKAVREVMNQMMEAWKQVPDLSEEVSPP-RSNASSKGDASDGRYPSGSRVGSTPA---KS 326

Query:   306 RSILASKSTPPDSSFPTTARKRGFLKKVSP------AVLHKVDQKKPSDWR-DQISAPSG 358
             R+ L ++STPP SS  TTARK+   K +        A L K + ++  +W+    S P+G
Sbjct:   327 RTHLVNRSTPPGSSLATTARKQANRKSIDQKKTSLTASLTKPNVRRRLEWKAGGASIPTG 386

Query:   359 ASLVDA-HEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHE 417
              SL D  H D       N + T      T + L   SS    +   SG+ +   +   H 
Sbjct:   387 VSLEDEQHCDHD----ENAKETSHSSHNTVQKLGGVSSSLNGNIPPSGATMVTGH---HV 439

Query:   418 FTVSDNTENLHIKHKDCEDLSTIRNQLVQIEXXXXXXXXXXXRFIGRSESGMQSLETRVL 477
              + + N+ N     K  ED+S IRNQLVQIE           RF+G S+ GM+ LETRV 
Sbjct:   440 LSENPNSNNC----KGLEDISLIRNQLVQIEQQQANLMDLLQRFVGSSQHGMRGLETRVH 495

Query:   478 GLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTEGRYXXXXXXXXX 537
             GLELALDEISYDLAVS GRM+  +S    CC+LP   F+ SKFW+K + +Y         
Sbjct:   496 GLELALDEISYDLAVSNGRMSNGSSRN-NCCLLPSGSFIKSKFWKKHDSKYS-------- 546

Query:   538 XXXXXXAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEIHP 583
                   A    T ++R AE  +++N R RF  S GFIVNPLAEI P
Sbjct:   547 ------ASRMSTYRNRNAETTEIQNSRHRFNGSPGFIVNPLAEIRP 586

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205739 AT1G27210 [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 177/541 (32%), Positives = 269/541 (49%)

Query:     5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
             LK  V   LNKL+DRDT + A+ ELDSIA  +       FL+CI +T+SS K  VRK+C+
Sbjct:    35 LKQRVIACLNKLADRDTLALASAELDSIARNLTHDSFSPFLNCIHNTDSSVKSPVRKQCV 94

Query:    65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
              +++ LS  H  +L+P++ K+++++ R  RD +S++++ C    + +S  V    F ++ 
Sbjct:    95 ALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSACAVATADMSAHVTRQPFASVA 154

Query:   123 KLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERLLKSEVFKAKXXX 182
             K L + L  E D+N Q+G             DP++ +L +   ++ +LLKS+ FKAK   
Sbjct:   155 KPLIETLIQEGDSNLQIGAALCLAASVDAATDPESEQLRKSLPKIGKLLKSDGFKAKAAL 214

Query:   183 XXXXXXXXXXXXXXXX-XLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXXXXXKDAVPEFK 241
                               L  LV  L+ FLSS+D                  +D   ++K
Sbjct:   215 LSAVGSIITAGGAGTKPVLDWLVPVLIEFLSSEDWAARKSAAEALGKVATA-EDLASQYK 273

Query:   242 GKCLKIFESKRFDKMI---EAWKQVPDLSEEASPPPQ-SLDPSK---EDGSDRRYLTESR 294
               C    ES+RFDK+    E   +  +L +E S   + SL PS+   +DG+   + + +R
Sbjct:   274 KTCTTALESRRFDKVKSVRETMNRALNLWKEVSTDDEASLSPSRSSTDDGNIGCFSSVTR 333

Query:   295 SSSTK-GLEL----KKRSILA-SKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKKPSD 348
             SS+   GL+     K   I+  S S P + S+  T +K    K+    +   V++    D
Sbjct:   334 SSTIDVGLKSARPKKVTPIMKRSPSLPVNRSYAATRQKENLPKRNQGNMTMLVEEASSVD 393

Query:   349 WRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRV 408
              +     P   S  +  E        N+    + K          S       LRSGSRV
Sbjct:   394 NKGPHFTPVKKSSEETEEKA------NSGGPDIIKHTISEKSREDSKVSSFGGLRSGSRV 447

Query:   409 TPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLVQIEXXXXXXXXXXXRFIGRSESG 468
              P +++    +V +  +++    KD E+LS IR QL  IE           +F+G S+SG
Sbjct:   448 APCSDDGD--SVKNCKDDVEESKKDSEELSLIREQLALIENQQSSLLDLLQKFMGTSQSG 505

Query:   469 MQSLETRVLGLELALDEISYDLAVSTGRMTKTNSH--GATCCILPGADFLSSKFWRKTEG 526
             +QSLE+RV GLE+ALDEIS DLAVS GR+ + +S   G +C  LPG +FLS KFWRKTE 
Sbjct:   506 IQSLESRVSGLEMALDEISCDLAVSNGRVPRNSSGCAGDSCSKLPGTEFLSPKFWRKTEE 565

Query:   527 R 527
             R
Sbjct:   566 R 566

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025906 AT1G59850 "AT1G59850" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 98/325 (30%), Positives = 156/325 (48%)

Query:     5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
             LK  V   LN+LSDRDT + AA ELDSIA  + P     F++C+ ST+SS K  VRK C+
Sbjct:    22 LKQRVIACLNRLSDRDTLALAAAELDSIALNLSPETFSLFINCLQSTDSSAKSPVRKHCV 81

Query:    65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
              +++ LS SH  +L+P+++K+++++ R  RD +S+++A C++    ++  +    F  + 
Sbjct:    82 SLLSVLSRSHGDSLAPHLSKMVSTVLRRLRDPDSSVRAACVAASVDMTTNITGQPFSILF 141

Query:   123 KLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERLLKSEVFKAKXXX 182
               + + +  + D NAQ+              +PD  +L +   ++ +LLKSE FKAK   
Sbjct:   142 GPMIETVIHDCDPNAQISAAMCLAAAVDAADEPDVEQLQKALPKIGKLLKSEGFKAKAEL 201

Query:   183 XXXXXXXXXXXXXXXXXLKGLVSCLLG----FLSSQDXXXXXXXXXXXXXXXXXXKDAVP 238
                               K ++  LL     FLSS D                  ++  P
Sbjct:   202 LGAIGTVIGAVGGRNSE-KAVLDWLLPNVSEFLSSDDWRARKAAAEAMARVAMVEEELAP 260

Query:   239 EFKGKCLKIFESKRFDKM----------IEAWKQVPDLSEEASPPPQSLDPSKEDGSDRR 288
              +K  CL I ES+RFDK+          +  WKQ+   S E S   +S   SK   S   
Sbjct:   261 LYKKTCLGILESRRFDKVKLVRETMNRTLGLWKQLEGDSTEVS---ESSSSSKSASSGLS 317

Query:   289 YLTESRSSSTKGLELKKRSILASKS 313
               +  RS++ KG +    + L+SKS
Sbjct:   318 ATSGKRSNTLKGKDRNLNTPLSSKS 342

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060161 AT2G07170 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
 Identities = 101/397 (25%), Positives = 163/397 (41%)

Query:     5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
             LK  V   LNKL+DRDTY +   EL+     + P  +  FLSCIL T+S  K  VRKECI
Sbjct:    27 LKKKVVIALNKLADRDTYQRGVDELEKTVEHLAPDKVSCFLSCILDTDSEQKSAVRKECI 86

Query:    65 HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA------S 116
              ++ TL+  H   + PY+ K+++SI +  +D +S ++  CI T+  L+ ++         
Sbjct:    87 RLMGTLARFHEGLVGPYLGKMVSSIVKRLKDPDSVVRDACIETMGVLASKMSCYEDQNFG 146

Query:   117 AFVTMLKLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERLLKSEVF 176
              FV+++K L +A+  +Q+   Q G             +     + RM +R  +LL +  F
Sbjct:   147 VFVSLVKPLFEAI-GDQNKYVQSGAALCLARVIDSSPEAPVAIIQRMLMRTVKLLNNSHF 205

Query:   177 KAK-XXXXXXXXXXXXXXXXXXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXXXXXKD 235
              AK                     L   +S     L ++D                  + 
Sbjct:   206 IAKPAVIELNRSIILAGGATSKSVLSSAMSSFQDALKNKDWTTRKAASVALMEIAATGEK 265

Query:   236 AVPEFKGKCLKIFESKRFDKMIEAWKQVPDLSE--EASPPPQSLDPSKEDGSDRRYLTES 293
              +   K  C+   ES RFDK+      V    +  +  P   S +PS+ + S +     +
Sbjct:   266 FLGPLKASCICSLESCRFDKVKPVRDSVILALKYWKGVPGSDSPEPSETESSVKESYNGA 325

Query:   294 RSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKKPS--DWRD 351
             R SS    EL   S    K            RK+  +    P   +  D +K +  DW  
Sbjct:   326 RESS----ELFSTSDFKVKDGMSIKYVTDVTRKKVPVSARQPPTRYNDDPRKSNQDDWHI 381

Query:   352 QISAPSGA--SLVDAHED---GTVLKIRNNENTKLPK 383
             +I+ P  +  S VD + +   G+ +     E T  P+
Sbjct:   382 EIAVPESSFVSKVDLYNEESEGSCITKTFAETTNTPE 418

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0000910 "cytokinesis" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007017 "microtubule-based process" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2136467 TOR1 "TORTIFOLIA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 8.4e-17, P = 8.4e-17
 Identities = 91/357 (25%), Positives = 149/357 (41%)

Query:     5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
             LK  +   ++KL+DRDTY  A ++L+    ++ P  LP FL+C+  + S  KP V+KEC+
Sbjct:    42 LKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECL 101

Query:    65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS----------PR 112
             H+++ + + H  + + ++TKII  I +  +D +S ++  C  T+ +LS            
Sbjct:   102 HLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTN 161

Query:   113 VGASAFVTML--KLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERL 170
              G+++    L  K L +A+  EQ+   Q G              P      ++  R+ +L
Sbjct:   162 TGSASLAVGLFVKPLFEAM-GEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKL 220

Query:   171 LKSEVFKAKXXXXXXXXXXXXXXXXXXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXX 230
             L +  F AK                    L+ L+  +   L S D               
Sbjct:   221 LSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALA 280

Query:   231 XXXKDAVPEFKGKCLKIFESKRFDKMIEAWKQVPDLSEEASPPPQSLDPSKEDG-SDRRY 289
                   + E     + + E+ RFDK+    K V +   EA    + +     DG SD   
Sbjct:   281 SHSSGLIKEKTDSTITVLETCRFDKI----KPVRESVTEALQLWKKISGKYVDGASDDSK 336

Query:   290 LTESRS-SSTKGLELKKRSILAS--KSTPPDSSF--PTTARK-RGFLKKVSPAVLHK 340
             L+ S    S K  E  KRS LA   K    D S   P +A K +G   + +  +L K
Sbjct:   337 LSASEQLGSEKNGE--KRSNLADLMKKEASDGSTLSPDSASKGKGCFPEKAVGLLKK 391

GO:0009507 "chloroplast" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010031 "circumnutation" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2036411 AT1G50890 "AT1G50890" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 62/268 (23%), Positives = 107/268 (39%)

Query:     5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKE 62
             LK  +   L++L DRDTY  A  +L+ I  +V   P +LP  L C+  ++S  K  V++E
Sbjct:    37 LKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPVKRE 96

Query:    63 CIHVIATLSNSH-NLS-PYITKIINSITRNFRDKNSALQATCISTVSSLSPR-------- 112
              I +++ L  S+ +LS   + KII+ I +  +D ++ ++  C   + SLS +        
Sbjct:    97 SIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEKEVE 156

Query:   113 ----VGASAFVTMLKLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLE 168
                 VG+S      K L +A+  EQ+ + Q G             +P      ++  R+ 
Sbjct:   157 NGNYVGSSLVGLFAKPLFEAM-AEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPRIS 215

Query:   169 RLLKSEVFKAKXXXXXXXXXXXXXXXXXXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXX 228
             +LL S  +  K                    L+ L+  +   L   +             
Sbjct:   216 KLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVLIS 275

Query:   229 XXXXXKDAVPEFKGKCLKIFESKRFDKM 256
                     V +     L   E+ RFDK+
Sbjct:   276 LAVHSSSLVADKTDSTLTALEACRFDKI 303

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XV0443 SubName- Full=Putative uncharacterized protein; (612 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	594
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.97
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.92
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.34
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.17
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.17
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.86
PRK09687	280	putative lyase; Provisional	98.83
PRK09687	280	putative lyase; Provisional	98.79
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.76
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.61
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.56
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.53
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.53
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.5
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.48
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.44
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.41
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.36
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.33
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.32
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.28
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.24
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.21
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.21
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.2
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.18
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.13
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.12
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.12
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.11
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.09
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.08
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.96
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.96
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.92
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	97.88
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.88
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.84
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.83
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.8
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.76
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.75
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.69
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.68
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.67
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.67
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.61
PTZ00429	746	beta-adaptin; Provisional	97.47
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.47
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.45
PF05004	309	IFRD: Interferon-related developmental regulator (	97.44
PF05004	309	IFRD: Interferon-related developmental regulator (	97.39
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.38
TIGR02270	410	conserved hypothetical protein. Members are found	97.35
TIGR02270	410	conserved hypothetical protein. Members are found	97.3
PTZ00429	746	beta-adaptin; Provisional	97.28
KOG2956	516	consensus CLIP-associating protein [General functi	97.26
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.23
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.22
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.19
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.18
KOG2956	516	consensus CLIP-associating protein [General functi	97.11
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.07
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.02
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.96
KOG2933	334	consensus Uncharacterized conserved protein [Funct	96.84
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.8
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	96.66
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.62
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.56
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.48
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.44
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.4
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.36
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	96.27
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.14
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.12
KOG2137	700	consensus Protein kinase [Signal transduction mech	96.05
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	95.92
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.85
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.79
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.65
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.36
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	95.32
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.11
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.1
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.93
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	94.91
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.82
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.7
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	94.6
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	94.57
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	94.53
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.49
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	94.31
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	94.29
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.28
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	94.22
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.19
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.11
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	93.99
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	93.97
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	93.96
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	93.95
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	93.95
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.9
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	93.88
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.69
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	93.68
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	93.38
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	93.36
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	93.2
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	93.13
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.06
KOG2032	533	consensus Uncharacterized conserved protein [Funct	92.82
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	92.76
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.75
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.68
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.51
PF05804	708	KAP: Kinesin-associated protein (KAP)	92.22
PF05536	543	Neurochondrin: Neurochondrin	92.12
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	91.84
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.81
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	91.76
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.46
KOG2549	576	consensus Transcription initiation factor TFIID, s	91.45
COG5096	757	Vesicle coat complex, various subunits [Intracellu	91.26
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	91.2
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	91.06
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	91.04
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	90.65
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.45
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	90.41
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	90.33
KOG2025	892	consensus Chromosome condensation complex Condensi	90.31
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	90.29
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	90.26
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	90.22
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	90.13
KOG2062	929	consensus 26S proteasome regulatory complex, subun	89.89
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.84
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	89.61
KOG1837	1621	consensus Uncharacterized conserved protein [Funct	89.59
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	89.58
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	89.25
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	89.1
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	88.94
KOG2062	929	consensus 26S proteasome regulatory complex, subun	88.8
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	88.76
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	88.67
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.65
KOG2933	334	consensus Uncharacterized conserved protein [Funct	88.51
COG5116	926	RPN2 26S proteasome regulatory complex component [	87.97
KOG0567	289	consensus HEAT repeat-containing protein [General	87.92
KOG2259	823	consensus Uncharacterized conserved protein [Funct	87.66
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	87.62
KOG4413	524	consensus 26S proteasome regulatory complex, subun	87.19
PF14631	1426	FancD2: Fanconi anaemia protein FancD2 nuclease; P	87.15
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	86.09
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	86.03
KOG4413	524	consensus 26S proteasome regulatory complex, subun	85.95
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	85.58
KOG2137	700	consensus Protein kinase [Signal transduction mech	85.21
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	85.13
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	85.05
KOG2081	559	consensus Nuclear transport regulator [Intracellul	84.95
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	84.52
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	84.35
PF10350	255	DUF2428: Putative death-receptor fusion protein (D	84.3
KOG1243	690	consensus Protein kinase [General function predict	83.91
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.7
KOG2081	559	consensus Nuclear transport regulator [Intracellul	83.28
PF05327	563	RRN3: RNA polymerase I specific transcription init	83.26
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	83.1
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	82.91
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	82.15
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	81.96
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	81.81
KOG2149	393	consensus Uncharacterized conserved protein [Funct	81.61
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	81.54
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	81.33
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	81.06
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	80.96
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	80.64
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	80.58
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	80.14

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.9e-31  Score=299.98  Aligned_cols=266  Identities=16%  Similarity=0.194  Sum_probs=229.3

Q ss_pred             hHHHHHHHHHhhcCCCh------------h---HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHH
Q 007670            3 HALKTSVNGLLNKLSDR------------D---TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHV   66 (594)
Q Consensus         3 ~~Lk~rvl~~L~KLsDr------------D---T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~l   66 (594)
                      .+|---+|...+.+.|+            |   ++++|.+.||.+|.+|+|++ +|+++..+...++|++|..|++++++
T Consensus       292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A  371 (1075)
T KOG2171|consen  292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA  371 (1075)
T ss_pred             ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            34455566666666554            2   99999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH-----HhHHHHHHHHcc-CCChhHH
Q 007670           67 IATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-----TMLKLLSDALFT-EQDTNAQ  138 (594)
Q Consensus        67 LGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~-----~~lkPL~eaL~~-eq~k~vQ  138 (594)
                      |+++++||  .|.++|++||++|+.+|+||++.||-|||+|+|+++..+  +|..     ..+.|++-.+++ .+++.||
T Consensus       372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl--~p~iqk~~~e~l~~aL~~~ld~~~~~rV~  449 (1075)
T KOG2171|consen  372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL--QPEIQKKHHERLPPALIALLDSTQNVRVQ  449 (1075)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh--cHHHHHHHHHhccHHHHHHhcccCchHHH
Confidence            99999999  888999999999999999999999999999999999999  5533     367766666654 4688999


Q ss_pred             HHHHHHHHHHHhhcCCC-cchhHHHHHHHHHH-HhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcC--
Q 007670          139 VGAALCLAATIDAAQDP-DAGKLGRMEVRLER-LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSS--  213 (594)
Q Consensus       139 ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~k-lL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~s--  213 (594)
                      ..||.||..+.|..+.. +.|||+.||++++. |+.++...+|.+++.+|||+|.+++. |.|||+.+||.|..||.+  
T Consensus       450 ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~  529 (1075)
T KOG2171|consen  450 AHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD  529 (1075)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence            99999999998887655 57999999995554 55555778999999999999977655 789999999999999974  


Q ss_pred             --CcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH----------HHHHHhhcCCCCCCC
Q 007670          214 --QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK----------MIEAWKQVPDLSEEA  270 (594)
Q Consensus       214 --eDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK----------~i~lWk~i~~v~~~~  270 (594)
                        +...+|.-.+||++.||.++| +.|.|++.++|+.+-....+-          +|.+|..+.+++++.
T Consensus       530 ~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~  599 (1075)
T KOG2171|consen  530 DKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDD  599 (1075)
T ss_pred             chhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchh
Confidence              458999999999999999998 899999999998666553433          999999999999653

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1e-24  Score=239.31  Aligned_cols=225  Identities=17%  Similarity=0.203  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL   98 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~V   98 (594)
                      -+++.++.||.||.-+..+-++.+|+.|.+...++.|-+|.++|++||.+||||  .+-||||.++|++++.|.|--+-|
T Consensus       371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV  450 (885)
T KOG2023|consen  371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV  450 (885)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence            789999999999999999889999999999999999999999999999999999  888999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCc
Q 007670           99 QATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV  175 (594)
Q Consensus        99 R~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~  175 (594)
                      |..+||||++++.|+..++-..|++|+++.|+   -+.+|.||.+||.|+|.+.|.+++..+|||..++..|.++|  .-
T Consensus       451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af--~k  528 (885)
T KOG2023|consen  451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAF--GK  528 (885)
T ss_pred             eeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--HH
Confidence            99999999999999987774458888888776   37899999999999999999999999999999999999999  67


Q ss_pred             hhhHHH--HHHHHHHHH-hcCcCc--CCchHHHHHHHHhhhc---CCc---HHHHHHHHHHHHHHHHHcCCccchhh---
Q 007670          176 FKAKAA--GLVVVGSVI-GSGAVD--GSGLKGLVSCLLGFLS---SQD---WAARKAAAEALWRLAVVEKDAVPEFK---  241 (594)
Q Consensus       176 fkaK~a--lL~aIGSiA-~a~~~~--~pyf~~lm~~L~e~L~---seD---w~lRKaAaDaLg~IA~a~gd~f~py~---  241 (594)
                      |+.|..  ++.|||.+| .+|-+.  ..|.+-+||-|++.+.   ++|   |++    .|||++||+++|+-|.||.   
T Consensus       529 YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~~gF~P~~~~V  604 (885)
T KOG2023|consen  529 YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALGVGFLPYAQPV  604 (885)
T ss_pred             HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHhccccccCHHH
Confidence            777776  778999999 555443  3889999999999854   444   884    9999999999999999996   


Q ss_pred             -hHHHHHHHhc
Q 007670          242 -GKCLKIFESK  251 (594)
Q Consensus       242 -~~~m~sLEs~  251 (594)
                       +.|+++++.|
T Consensus       605 y~Rc~~il~~t  615 (885)
T KOG2023|consen  605 YQRCFRILQKT  615 (885)
T ss_pred             HHHHHHHHHHH
Confidence             6788888877

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=3.7e-11  Score=135.18  Aligned_cols=250  Identities=16%  Similarity=0.160  Sum_probs=187.8

Q ss_pred             HHHHHHHhhcCCChh------HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---cc
Q 007670            6 KTSVNGLLNKLSDRD------TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL   76 (594)
Q Consensus         6 k~rvl~~L~KLsDrD------T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~i   76 (594)
                      -=-++..|+|=+++|      +++.|-..|..+|+..--+-+|+.|..|.+.+++|+|..|.+++++||-+-+|-   -+
T Consensus       321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L  400 (859)
T KOG1241|consen  321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL  400 (859)
T ss_pred             hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh
Confidence            335677788843222      888888899999988877779999999999999999999999999999998877   88


Q ss_pred             ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---------------------h------------------
Q 007670           77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------A------------------  117 (594)
Q Consensus        77 sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---------------------~------------------  117 (594)
                      .|..+.-+|+|++...||.-.||+++.+++|++++++.+.                     |                  
T Consensus       401 t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~  480 (859)
T KOG1241|consen  401 TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAY  480 (859)
T ss_pred             hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999998741                     0                  


Q ss_pred             ----------hH-HhHHHHHHHHcc--C----CChhHHHHHHHHHHHHHhhcC---------------------------
Q 007670          118 ----------FV-TMLKLLSDALFT--E----QDTNAQVGAALCLAATIDAAQ---------------------------  153 (594)
Q Consensus       118 ----------~~-~~lkPL~eaL~~--e----q~k~vQ~~Aa~ALaavvE~l~---------------------------  153 (594)
                                .. .|+.+++..|++  +    ++-+.-.+|.-||-.+|.+.+                           
T Consensus       481 eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l  560 (859)
T KOG1241|consen  481 EAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQIL  560 (859)
T ss_pred             HhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      00 144444444441  1    223344455555555555543                           


Q ss_pred             ---------------------------CCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHh-cCcCcCCchHHHH
Q 007670          154 ---------------------------DPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLV  204 (594)
Q Consensus       154 ---------------------------~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~-a~~~~~pyf~~lm  204 (594)
                                                 ..+.++-..||.-|+++|+++ +--+..-++.+|++++. .|+.|..|++.+.
T Consensus       561 ~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~  640 (859)
T KOG1241|consen  561 SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK  640 (859)
T ss_pred             cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence                                       333333455666677777663 44455667778888774 4666778888888


Q ss_pred             HHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH----hcchhH
Q 007670          205 SCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE----SKRFDK  255 (594)
Q Consensus       205 ~~L~e~L~-seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE----s~RfDK  255 (594)
                      |.|..-|. ..|.++=.+|.-..|.|+.++++.|.||.+.+|.+|=    +.+.|+
T Consensus       641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR  696 (859)
T KOG1241|consen  641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR  696 (859)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc
Confidence            88888884 5799999999999999999999999999999987554    444444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.17  E-value=1.1e-09  Score=120.70  Aligned_cols=242  Identities=14%  Similarity=0.118  Sum_probs=188.6

Q ss_pred             HHHHHhhcCC----Chh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---cccc
Q 007670            8 SVNGLLNKLS----DRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSP   78 (594)
Q Consensus         8 rvl~~L~KLs----DrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isp   78 (594)
                      .+|..|.|=+    |+|  +...|...|...|+.--..-+.+.+..+.+.+.+++|..|.+++++||-+-+|-   -+.|
T Consensus       325 ~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~  404 (858)
T COG5215         325 ELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK  404 (858)
T ss_pred             HHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence            3455666632    222  888888888888886655458899999999999999999999999999997776   7889


Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---------------------hh-------------------
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------AF-------------------  118 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---------------------~~-------------------  118 (594)
                      +++..+|.|.....||---|.+.++|++|++|+++.+-                     |+                   
T Consensus       405 ~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a  484 (858)
T COG5215         405 IVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKA  484 (858)
T ss_pred             hHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhh
Confidence            99999999999999988889999999999999998740                     00                   


Q ss_pred             ----HH----hHHHHHHHHcc-----CCChhHHHHHHHHHHHHHhhcCCCcchhH-------------------------
Q 007670          119 ----VT----MLKLLSDALFT-----EQDTNAQVGAALCLAATIDAAQDPDAGKL-------------------------  160 (594)
Q Consensus       119 ----~~----~lkPL~eaL~~-----eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-------------------------  160 (594)
                          .+    |..-++.+|++     .++-+.-.+++.||-.+|+.+++...+.+                         
T Consensus       485 ~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~e  564 (858)
T COG5215         485 VREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATE  564 (858)
T ss_pred             hccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence                11    33444444442     45667777888888888888766554332                         


Q ss_pred             -------------------------------HHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHH
Q 007670          161 -------------------------------GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCL  207 (594)
Q Consensus       161 -------------------------------~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L  207 (594)
                                                     ..||+-++++|.+. ..-+-.-++-+||+++.. ++.|..|.+.++|.|
T Consensus       565 D~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl  644 (858)
T COG5215         565 DQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYL  644 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence                                           23666666777555 333455577788888854 455789999999999


Q ss_pred             HhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670          208 LGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       208 ~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE  249 (594)
                      ...|...|.++=..|.-.+|.||..+|..|.+|.+.+|.+|-
T Consensus       645 ~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~Lv  686 (858)
T COG5215         645 TRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLV  686 (858)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            999988999999999999999999999999999988887765

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=6.6e-10  Score=129.82  Aligned_cols=235  Identities=17%  Similarity=0.157  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHHHhhcCC---CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCC
Q 007670           21 TYSQAAKELDSIAATVDP---TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDK   94 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lpp---e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~   94 (594)
                      -++.|+-.|-.+++.=+-   ..|+.+|+.+...+.++.|.+|-+|+.++|-++...   +-..|=++|+|.++--+-|+
T Consensus       364 ~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~  443 (1075)
T KOG2171|consen  364 ERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST  443 (1075)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence            556666667666665321   148889999999999999999999999999998888   55556777888999999998


Q ss_pred             Ch-hHHHHHHHHHHhhchhhhcchhHHhHHH----HHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670           95 NS-ALQATCISTVSSLSPRVGASAFVTMLKL----LSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER  169 (594)
Q Consensus        95 Ds-~VR~Ac~~ALG~LAe~l~~~~~~~~lkP----L~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k  169 (594)
                      +. .|...++-|+-.+++.+.+.-+.-||.+    ++..|.....+.+|..+..||+.+-+.+.....+|+..+||-|.+
T Consensus       444 ~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~  523 (1075)
T KOG2171|consen  444 QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN  523 (1075)
T ss_pred             CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence            86 6888788888888888865433324444    444554566899999999999999999999999999999999999


Q ss_pred             HhcCCc----hhhHHHHHHHHHHHHh-cCcC-cCCchHHHHHHHHhh---hcCCcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670          170 LLKSEV----FKAKAAGLVVVGSVIG-SGAV-DGSGLKGLVSCLLGF---LSSQDWAARKAAAEALWRLAVVEKDAVPEF  240 (594)
Q Consensus       170 lL~s~~----fkaK~alL~aIGSiA~-a~~~-~~pyf~~lm~~L~e~---L~seDw~lRKaAaDaLg~IA~a~gd~f~py  240 (594)
                      .|.+.+    ...+.-.+.+|+-++. +|++ |.|+...+|+.+.+.   -..+|-.+|.--+-+.+.|+.++|+.|.||
T Consensus       524 ~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~  603 (1075)
T KOG2171|consen  524 FLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPF  603 (1075)
T ss_pred             HHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhH
Confidence            997664    2245556889998884 4645 789999999999887   445788899999999999999999999999


Q ss_pred             hhHHH-HHHHhcchhH
Q 007670          241 KGKCL-KIFESKRFDK  255 (594)
Q Consensus       241 ~~~~m-~sLEs~RfDK  255 (594)
                      ...+| -.+-+.+.|-
T Consensus       604 L~~Vmppl~~ta~~~p  619 (1075)
T KOG2171|consen  604 LPVVMPPLLKTARLDP  619 (1075)
T ss_pred             HHHHhHHHHHhhccCC
Confidence            99999 6888888886

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.86  E-value=3.9e-08  Score=96.85  Aligned_cols=189  Identities=20%  Similarity=0.254  Sum_probs=134.7

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-------ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV  113 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-------~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      |..++..+.....+.+|..|.+++.-|-.++.++       .+.++|..++..|++.+.|.-+.|-..+|.+++.|+..+
T Consensus         5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l   84 (228)
T PF12348_consen    5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL   84 (228)
T ss_dssp             -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4445556644457789999999999999997777       233456666788999999999999999999999999999


Q ss_pred             hcc--hhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH-HHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670          114 GAS--AFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM-EVRLERLLKSEVFKAKAAGLVVVGSV  189 (594)
Q Consensus       114 ~~~--~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L-~~RL~klL~s~~fkaK~alL~aIGSi  189 (594)
                      ...  ++. .++++|+.-+ ++.++.+...|..||..+++..+     |.+++ .+.+...+++.+.++|..++..+..+
T Consensus        85 ~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~  158 (228)
T PF12348_consen   85 GSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAII  158 (228)
T ss_dssp             GGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            653  222 3777788877 78889999999999999999765     44565 66778889999999999999999998


Q ss_pred             HhcCc---C-cC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670          190 IGSGA---V-DG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD  235 (594)
Q Consensus       190 A~a~~---~-~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd  235 (594)
                      +..-+   . ..  .+++.+++.|..+|.+.+-.+|.+|-.++..+....|+
T Consensus       159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            86554   2 22  34688999999999999999999999999999988763

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PRK09687 putative lyase; Provisional

Probab=98.83  E-value=1e-07  Score=98.89  Aligned_cols=196  Identities=15%  Similarity=0.106  Sum_probs=134.9

Q ss_pred             HHHHHHHHhhc-CCChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670            5 LKTSVNGLLNK-LSDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI   80 (594)
Q Consensus         5 Lk~rvl~~L~K-LsDrD--T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL   80 (594)
                      ++..-+..|.+ |.|.|  ....|+..|..    +..+. ++.+...+    .++++.+|++++.+||.+...-.   ..
T Consensus        20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~----~~~~~~~~~l~~ll----~~~d~~vR~~A~~aLg~lg~~~~---~~   88 (280)
T PRK09687         20 CKKLNDDELFRLLDDHNSLKRISSIRVLQL----RGGQDVFRLAIELC----SSKNPIERDIGADILSQLGMAKR---CQ   88 (280)
T ss_pred             HhhccHHHHHHHHhCCCHHHHHHHHHHHHh----cCcchHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCcc---ch
Confidence            33333444433 46666  34455555543    34444 55555533    35788999999999999743111   15


Q ss_pred             HHHHHHHHhh-hcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670           81 TKIINSITRN-FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK  159 (594)
Q Consensus        81 pkIL~~Ivrr-LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y  159 (594)
                      ++.++.+... ++|+|+.||.+++.+||.++..... +...++..|..++ .+.+..|+.+|+.||..+-    +     
T Consensus        89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~----~-----  157 (280)
T PRK09687         89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITA-FDKSTNVRFAVAFALSVIN----D-----  157 (280)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHh-hCCCHHHHHHHHHHHhccC----C-----
Confidence            6788888876 8999999999999999999654321 1223566666666 5668889999999995331    1     


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                       +..++-|+.+|+.++..++..++.++|.+   +    ..-+.+++.|...|.+++|.+|+.|+.+||.+.
T Consensus       158 -~~ai~~L~~~L~d~~~~VR~~A~~aLg~~---~----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        158 -EAAIPLLINLLKDPNGDVRNWAAFALNSN---K----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             -HHHHHHHHHHhcCCCHHHHHHHHHHHhcC---C----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence             34566788888888888888888888865   1    112467788888888999999999999998763

>PRK09687 putative lyase; Provisional

Probab=98.79  E-value=3.4e-07  Score=94.95  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=119.1

Q ss_pred             CCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC
Q 007670           53 SSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE  132 (594)
Q Consensus        53 ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e  132 (594)
                      .++++.+|..++.+||.++..+.  .+.++.+..+...+.|++..||.+++.+||.+...-       .+.+|+.+| .+
T Consensus       101 ~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-------ai~~L~~~L-~d  170 (280)
T PRK09687        101 EDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-------AIPLLINLL-KD  170 (280)
T ss_pred             cCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-------HHHHHHHHh-cC
Confidence            46778999999999999976552  236788888899999999999999999999886544       778888888 67


Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007670          133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS  212 (594)
Q Consensus       133 q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~  212 (594)
                      .+..|...|+.+|..+-.  .      -+...+-|.++|+.++..++..++.++|.+   +      -+..+|.|..+|.
T Consensus       171 ~~~~VR~~A~~aLg~~~~--~------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~------~~~av~~Li~~L~  233 (280)
T PRK09687        171 PNGDVRNWAAFALNSNKY--D------NPDIREAFVAMLQDKNEEIRIEAIIGLALR---K------DKRVLSVLIKELK  233 (280)
T ss_pred             CCHHHHHHHHHHHhcCCC--C------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc---C------ChhHHHHHHHHHc
Confidence            888999999999988711  1      124555678888888999988877777642   1      1367899999998


Q ss_pred             CCcHHHHHHHHHHHHHHHH
Q 007670          213 SQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       213 seDw~lRKaAaDaLg~IA~  231 (594)
                      +++  +|..|+++||.|..
T Consensus       234 ~~~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        234 KGT--VGDLIIEAAGELGD  250 (280)
T ss_pred             CCc--hHHHHHHHHHhcCC
Confidence            888  47889999998855

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=2.3e-07  Score=103.53  Aligned_cols=228  Identities=16%  Similarity=0.174  Sum_probs=180.5

Q ss_pred             HHHHHHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch
Q 007670            5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI   80 (594)
Q Consensus         5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL   80 (594)
                      +..-+-.+|++.+|.+  -++.|....+.+...+++..+..||.-+.......+|..+.+++-++|.++...  .++-.|
T Consensus       214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l  293 (569)
T KOG1242|consen  214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL  293 (569)
T ss_pred             HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence            3455667889998887  567888889999999999887777766655555559999999999999888877  888899


Q ss_pred             HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCcch
Q 007670           81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPDAG  158 (594)
Q Consensus        81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~--l~~~i~~  158 (594)
                      |.|+|.+...|-|..+.||+|+-.+|-.+++.+...-...+++-|+++| ++++..+.    -|++.+...  ..+...+
T Consensus       294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l-~dp~~~~~----e~~~~L~~ttFV~~V~~p  368 (569)
T KOG1242|consen  294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL-ADPSCYTP----ECLDSLGATTFVAEVDAP  368 (569)
T ss_pred             hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-cCcccchH----HHHHhhcceeeeeeecch
Confidence            9999999999999999999999999999999884333334999999999 55553333    233433332  2333347


Q ss_pred             hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cC--cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007670          159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG--AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-  234 (594)
Q Consensus       159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~-a~--~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-  234 (594)
                      -|..|+|=|-+-|+..++..|......|+=++. ++  .+..||++.++|-|..-+.+.+=++|-.|+-+|+.+-.-.| 
T Consensus       369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            888899999999988888887777777776553 32  33459999999999999988899999999999999998877 


Q ss_pred             Ccc
Q 007670          235 DAV  237 (594)
Q Consensus       235 d~f  237 (594)
                      ..|
T Consensus       449 ~~f  451 (569)
T KOG1242|consen  449 VSF  451 (569)
T ss_pred             hcc
Confidence            455

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.66  E-value=1.5e-06  Score=98.56  Aligned_cols=212  Identities=16%  Similarity=0.162  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcC
Q 007670           21 TYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD   93 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~-----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD   93 (594)
                      -.++.+...+.+...|+...     ...++.-|+-+++++....- --+..||.++...  -+.||||.|++.|..+|+.
T Consensus       732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn  810 (1172)
T KOG0213|consen  732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN  810 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence            35778999999999986433     34555555555555554332 3345677777777  7899999999999999999


Q ss_pred             CChhHHHHHHHHHHhhchhhhcch-h--HH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHH
Q 007670           94 KNSALQATCISTVSSLSPRVGASA-F--VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLE  168 (594)
Q Consensus        94 ~Ds~VR~Ac~~ALG~LAe~l~~~~-~--~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~  168 (594)
                      +.+-||+-+++.++.++--+-... +  -. +=.-|.|+| |+..|.|-..-..||-+++...+ ....+=...|+|||.
T Consensus       811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt  889 (1172)
T KOG0213|consen  811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT  889 (1172)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence            999999999999999998884321 1  12 334567788 88889888766666666665542 222334566888899


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670          169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       169 klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      -.|++.+-|+..-.+.++|.|+--|.++.+.=+|  +-=-|.+.|.+-.-..|.+|.+++|.||.++|
T Consensus       890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG  957 (1172)
T KOG0213|consen  890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG  957 (1172)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence            9999999999999999999999766665433222  22235566666677899999999999999988

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.61  E-value=1.5e-06  Score=103.05  Aligned_cols=117  Identities=18%  Similarity=0.222  Sum_probs=65.0

Q ss_pred             HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 007670           87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR  166 (594)
Q Consensus        87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~R  166 (594)
                      +++.|+|+|+.||.+++.+||.+...          ..|..+| ++.++.|+..|+.+|..+-....        .-.+.
T Consensus       719 l~~~L~D~d~~VR~~Av~aL~~~~~~----------~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~  779 (897)
T PRK13800        719 FAAALGDPDHRVRIEAVRALVSVDDV----------ESVAGAA-TDENREVRIAVAKGLATLGAGGA--------PAGDA  779 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcccCc----------HHHHHHh-cCCCHHHHHHHHHHHHHhccccc--------hhHHH
Confidence            34556666666666666666654211          1233333 55666666666666665533211        01344


Q ss_pred             HHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       167 L~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      |.++++.++..++.+++.++|.+   +.   +  +.+.+.|...|.++||.+|.+|+.+|+.+.
T Consensus       780 L~~ll~D~d~~VR~aA~~aLg~~---g~---~--~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~  835 (897)
T PRK13800        780 VRALTGDPDPLVRAAALAALAEL---GC---P--PDDVAAATAALRASAWQVRQGAARALAGAA  835 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhc---CC---c--chhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence            55677777777777777666643   11   1  122344666677777777777777777653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.56  E-value=1e-06  Score=96.39  Aligned_cols=185  Identities=18%  Similarity=0.212  Sum_probs=102.7

Q ss_pred             CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc
Q 007670           37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA  115 (594)
Q Consensus        37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~  115 (594)
                      .++-++.+++.|.....+++|.+||.|++++.-+.... -..+.-  +++.+.+.|.|+|+.|+.+|+.++..+ ..- +
T Consensus       108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-~  183 (526)
T PF01602_consen  108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-D  183 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-H
T ss_pred             ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--HHHHHhhhccCCcchhHHHHHHHHHHH-ccC-c
Confidence            44446666666666656666666666666666665554 111111  456666666666666666666666655 111 0


Q ss_pred             chhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670          116 SAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVI  190 (594)
Q Consensus       116 ~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA  190 (594)
                      .....++.+++..|.   +..++-+|.....+|..++...    ...-  ..+++.+..+|.+.+   .+.+++++..+.
T Consensus       184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~----~~~~~~~~~i~~l~~~l~s~~---~~V~~e~~~~i~  256 (526)
T PF01602_consen  184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME----PEDADKNRIIEPLLNLLQSSS---PSVVYEAIRLII  256 (526)
T ss_dssp             HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC----hhhhhHHHHHHHHHHHhhccc---cHHHHHHHHHHH
Confidence            000013333333332   4556665554444444322211    1111  345555555555333   233555555555


Q ss_pred             hcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          191 GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       191 ~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      ...... +....+++.|..+|.+.|+.+|-.|+++|..|+...
T Consensus       257 ~l~~~~-~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  257 KLSPSP-ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHSSSH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred             Hhhcch-HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence            433221 256778999999999999999999999999998876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.53  E-value=4.9e-07  Score=80.19  Aligned_cols=89  Identities=20%  Similarity=0.337  Sum_probs=76.0

Q ss_pred             chHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCC
Q 007670           59 VRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQ  133 (594)
Q Consensus        59 ~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq  133 (594)
                      +||.++..|+.++.+.  .+.+|+++|++.|++.+.|+|+.||-++|++|..++...-.. ...++.-+|++|.   .+.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC
Confidence            7999999999998888  899999999999999999999999999999999999888322 2227788888875   688


Q ss_pred             ChhHHHHHHHHHHHHH
Q 007670          134 DTNAQVGAALCLAATI  149 (594)
Q Consensus       134 ~k~vQ~~Aa~ALaavv  149 (594)
                      ++.||.+|.. |++++
T Consensus        81 d~~Vr~~a~~-Ld~ll   95 (97)
T PF12755_consen   81 DENVRSAAEL-LDRLL   95 (97)
T ss_pred             chhHHHHHHH-HHHHh
Confidence            9999998876 66554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=1.4e-06  Score=98.12  Aligned_cols=254  Identities=17%  Similarity=0.187  Sum_probs=174.9

Q ss_pred             HHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccc-hH
Q 007670            7 TSVNGLLNKL-S-DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPY-IT   81 (594)
Q Consensus         7 ~rvl~~L~KL-s-DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isph-Lp   81 (594)
                      +.+.+.|..= | |++|++.+..-|+.+-+ . | .|.-+|-+|.-...+.+-+.|..+=++|-.=..+|  .+.++ +.
T Consensus        13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~-p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~   89 (885)
T KOG2023|consen   13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNL-F-P-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD   89 (885)
T ss_pred             HHHHHHHHhccCCChHHHHHHHHHHHHHhc-c-c-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHH
Confidence            3344444332 2 77799988888877654 1 1 25555666666677778888998888888878888  44444 55


Q ss_pred             HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-----c
Q 007670           82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-----D  156 (594)
Q Consensus        82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-----i  156 (594)
                      -|=+.+++.|-|+++-||...-..+..++....-+.-..+|+-|.+.| ..++-++|.||+.||.+++|-..+.     .
T Consensus        90 yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L-~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~  168 (885)
T KOG2023|consen   90 YIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELL-DSPDYNTCEGAFGALQKICEDSAQFLDSDVL  168 (885)
T ss_pred             HHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHh-cCCcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence            556688999999999999654444444333322222334777777777 7788899999999999999975322     1


Q ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670          157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD  235 (594)
Q Consensus       157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd  235 (594)
                      ..-+..++||+++.++|++.+.+..++.+|--++-.-.. +.-..+..+..|-..-.+++-.+||..|-+|.-+.....+
T Consensus       169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d  248 (885)
T KOG2023|consen  169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD  248 (885)
T ss_pred             cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence            235778999999999999999999988877654422211 1123344444444334578999999999999999998889


Q ss_pred             ccchhhhHHHHHHHhcchhH-------HHHHHhhcC
Q 007670          236 AVPEFKGKCLKIFESKRFDK-------MIEAWKQVP  264 (594)
Q Consensus       236 ~f~py~~~~m~sLEs~RfDK-------~i~lWk~i~  264 (594)
                      .+.|+...++...=..--|.       |-++|-.++
T Consensus       249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            99999888886322222222       566777776

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.50  E-value=7.1e-08  Score=75.46  Aligned_cols=53  Identities=19%  Similarity=0.456  Sum_probs=50.2

Q ss_pred             CcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670           57 PGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSL  109 (594)
Q Consensus        57 p~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L  109 (594)
                      |.+|.+++.+||.+++.+  .+.||++.+++.++..|+|+++.||.++++|||+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998888  99999999999999999999999999999999976

...

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.48  E-value=2.2e-06  Score=101.64  Aligned_cols=121  Identities=16%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRME  164 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~  164 (594)
                      +.+...|.|++..||.+++.+||.+...-.     ..+..|...+ ++.++.|+..|+.+|..+...         +.+.
T Consensus       745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~---------~~~~  809 (897)
T PRK13800        745 ESVAGAATDENREVRIAVAKGLATLGAGGA-----PAGDAVRALT-GDPDPLVRAAALAALAELGCP---------PDDV  809 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccccc-----hhHHHHHHHh-cCCCHHHHHHHHHHHHhcCCc---------chhH
Confidence            456789999999999999999999976541     1244455555 788999999999999887431         1223


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670          165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL  229 (594)
Q Consensus       165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I  229 (594)
                      +.+..+|+.++..++.+++.++|.+.         -+..++.|...|.+++|.+|++|+.+|+.+
T Consensus       810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~---------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        810 AAATAALRASAWQVRQGAARALAGAA---------ADVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhcc---------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            45788899999999998888887422         134568888899999999999999999997

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=2.5e-06  Score=97.18  Aligned_cols=208  Identities=14%  Similarity=0.179  Sum_probs=162.3

Q ss_pred             hHHHHHhhhhcCC---CCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCC-------------hhHHHHH
Q 007670           41 LPTFLSCILSTNS---SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN-------------SALQATC  102 (594)
Q Consensus        41 lp~fLs~L~e~~s---s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~D-------------s~VR~Ac  102 (594)
                      ++.++..|.....   ......|-+++-+|+.+...+  .+.|-+.++..+|..+|...=             -.+..--
T Consensus       496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~L  575 (859)
T KOG1241|consen  496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLL  575 (859)
T ss_pred             HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence            5555555544422   245788999999999999888  888888888888888663321             1355666


Q ss_pred             HHHHHhhchhhhcc-hhHH--hHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh-cCCchh
Q 007670          103 ISTVSSLSPRVGAS-AFVT--MLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFK  177 (594)
Q Consensus       103 ~~ALG~LAe~l~~~-~~~~--~lkPL~eaL~~e-q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL-~s~~fk  177 (594)
                      |.+|+.+-..+... +.++  ++.-++-.| +. ..-.++.-|++|+.+++++++.....|.+.+-|=|..-| +...++
T Consensus       576 c~~Lq~i~rk~~~~~~~~~d~iM~lflri~-~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~q  654 (859)
T KOG1241|consen  576 CNTLQSIIRKVGSDIREVSDQIMGLFLRIF-ESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQ  654 (859)
T ss_pred             HHHHHHHHHHccccchhHHHHHHHHHHHHH-cCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHH
Confidence            66666665555321 2222  444444444 43 455688999999999999999999999999999999999 666999


Q ss_pred             hHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670          178 AKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       178 aK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE  249 (594)
                      +-.+++++||-++.+-++ +.||-+.+|..|..+|+++  +..+.-+-+-+.|-||.+.|..|.||.+.+|..|.
T Consensus       655 Vc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq  729 (859)
T KOG1241|consen  655 VCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQ  729 (859)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999988544 7899999999999999986  67888899999999999999999999999887665

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.6e-05  Score=89.06  Aligned_cols=227  Identities=17%  Similarity=0.149  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHH-Hhhh---ccccchHHHHHHHHhhhcCC
Q 007670           21 TYSQAAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATL-SNSH---NLSPYITKIINSITRNFRDK   94 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl-ae~h---~isphLpkIL~~IvrrLkD~   94 (594)
                      .++-|...+=.+...+.-+.  =..||.-+.....+-+++.|++ ..+|+.. ..++   ..-||+..++|.|+.-+.|.
T Consensus       150 ~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~  228 (569)
T KOG1242|consen  150 ERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK  228 (569)
T ss_pred             HHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc
Confidence            44444444444444443333  2346777777777788888887 4444443 2333   89999999999999999999


Q ss_pred             ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHH--HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670           95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQ--VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK  172 (594)
Q Consensus        95 Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ--~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~  172 (594)
                      +..||+|+.+|+-++-..+.......+++|++..|...   .-|  .++.--|..+.+.++....-+++.|+|.+.+.|.
T Consensus       229 ~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~---kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~  305 (569)
T KOG1242|consen  229 INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA---KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW  305 (569)
T ss_pred             chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH---hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc
Confidence            99999999999999999985444445999999999644   222  3555667777788777777789999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHhcCcC--------------------------------c-----CCchHHHHHHHHhhhcCCc
Q 007670          173 SEVFKAKAAGLVVVGSVIGSGAV--------------------------------D-----GSGLKGLVSCLLGFLSSQD  215 (594)
Q Consensus       173 s~~fkaK~alL~aIGSiA~a~~~--------------------------------~-----~pyf~~lm~~L~e~L~seD  215 (594)
                      ..+.++|.+.+.++--+-.+...                                |     .|-+.-+||.|+.-|..-+
T Consensus       306 DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs  385 (569)
T KOG1242|consen  306 DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS  385 (569)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc
Confidence            88999988877665443322111                                1     1333334444444444445


Q ss_pred             HHHHHHHHHHHHHHHHHcC--CccchhhhHHHHHHHhc
Q 007670          216 WAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESK  251 (594)
Q Consensus       216 w~lRKaAaDaLg~IA~a~g--d~f~py~~~~m~sLEs~  251 (594)
                      -.+++.++...+-++.-+-  ..+.||..+++.-|+.-
T Consensus       386 t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~  423 (569)
T KOG1242|consen  386 TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN  423 (569)
T ss_pred             chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence            5556666666666666552  36666666666555443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.36  E-value=2.5e-05  Score=87.07  Aligned_cols=239  Identities=18%  Similarity=0.140  Sum_probs=163.5

Q ss_pred             HHHhhcCCChh------HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHH-Hhh-----h--
Q 007670           10 NGLLNKLSDRD------TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATL-SNS-----H--   74 (594)
Q Consensus        10 l~~L~KLsDrD------T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl-ae~-----h--   74 (594)
                      -.+++..+|.-      |+-+=-+.=|.+|..++|.+ ++...+...--.. +.|..--.|-..+-.+ +..     |  
T Consensus       411 p~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~-D~p~~~~ncsw~~~nlv~h~a~a~~~~~  489 (858)
T COG5215         411 PGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM-DCPFRSINCSWRKENLVDHIAKAVREVE  489 (858)
T ss_pred             HHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh-ccchHHhhhHHHHHhHHHhhhhhhcccc
Confidence            34566777643      33333333355777788888 7777776654332 2333333333333333 221     1  


Q ss_pred             -ccccchHHHHHHHHhh--hcCCChhHHHHHHHHHHhhchhhhcch------h---------------------------
Q 007670           75 -NLSPYITKIINSITRN--FRDKNSALQATCISTVSSLSPRVGASA------F---------------------------  118 (594)
Q Consensus        75 -~isphLpkIL~~Ivrr--LkD~Ds~VR~Ac~~ALG~LAe~l~~~~------~---------------------------  118 (594)
                       ++.|+-+-|+..+++.  +.+.++..|-+...|||.|-.+..+..      +                           
T Consensus       490 S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~  569 (858)
T COG5215         490 SFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLV  569 (858)
T ss_pred             chhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence             7788888888888754  568999999999999999988876410      0                           


Q ss_pred             -------------------------HHhHHHHHHHHccCCChh-HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670          119 -------------------------VTMLKLLSDALFTEQDTN-AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK  172 (594)
Q Consensus       119 -------------------------~~~lkPL~eaL~~eq~k~-vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~  172 (594)
                                               ...+--||.-++...++. +-.-..+|+-++--.+++....|+++..|-|.+.|+
T Consensus       570 ~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln  649 (858)
T COG5215         570 EELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN  649 (858)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence                                     000111111111222222 223345555555555555666789999999999998


Q ss_pred             CCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670          173 SEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       173 s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE  249 (594)
                      .....+-..+++.||-+|.+ +.+|.+|-+.+|..|.++|.++  +..+.-+-+-+.|-||.+.|..|.+|.+.+|-.+.
T Consensus       650 ~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~q  729 (858)
T COG5215         650 CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQ  729 (858)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            88888888999999999976 4558899999999999999986  78888899999999999999999999999886543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.33  E-value=1.6e-05  Score=78.46  Aligned_cols=172  Identities=13%  Similarity=0.202  Sum_probs=122.7

Q ss_pred             hhHHHHHHHHHHHHHhhc-CCCChHHHHHhh-------hhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHH
Q 007670           19 RDTYSQAAKELDSIAATV-DPTLLPTFLSCI-------LSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSIT   88 (594)
Q Consensus        19 rDT~r~A~~eLD~LA~~L-ppe~lp~fLs~L-------~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Iv   88 (594)
                      =+...-|++.|..++..- +.+..+.|+.+|       .....+..+.+-+.++.+++.++...  .+.||++.++|.++
T Consensus        21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll  100 (228)
T PF12348_consen   21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL  100 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            337788999999988877 443455554444       45677778889999999999998877  89999999999999


Q ss_pred             hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--CCcc---hhHHHH
Q 007670           89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--DPDA---GKLGRM  163 (594)
Q Consensus        89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~--~~i~---~yL~~L  163 (594)
                      +++.|+...||++|..+|-.+..++  ....-++.+++.....+.++.+...++.+|..+++..+  ....   ..++.+
T Consensus       101 ~~~~~~~~~i~~~a~~~L~~i~~~~--~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l  178 (228)
T PF12348_consen  101 KKLGDSKKFIREAANNALDAIIESC--SYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQL  178 (228)
T ss_dssp             HGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHH
Confidence            9999999999999999999999998  31222545555555577888888899999999999988  2222   236789


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          164 EVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       164 ~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                      .+-+.+++..++..++.++-.++..+...
T Consensus       179 ~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  179 VKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888877644

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.32  E-value=2.5e-05  Score=87.16  Aligned_cols=251  Identities=15%  Similarity=0.182  Sum_probs=160.9

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHHH
Q 007670           10 NGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIIN   85 (594)
Q Consensus        10 l~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL~   85 (594)
                      +.||+. +++|....+.+.|+.+...+++.. ++-+...|...+.++++.+|.-+++.++.+++.. ....-+  ..+++
T Consensus        44 f~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   44 FDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            344442 467788888899999999998888 8999999999999999999999999999987655 222222  56899


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHh----HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH
Q 007670           86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM----LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG  161 (594)
Q Consensus        86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~----lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~  161 (594)
                      .|+..|.|+|..|-.+|..+|..|+.+-.  ....+    +.+-+..++...+..+...+.-++..+... .+...++.-
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~  199 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVV  199 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            99999999999999999999999997652  21112    122223332333555554433332222211 122234444


Q ss_pred             H--HHHHHHHHhcCCchhhHHHHHHHHHHHHhc-----------------------------------------------
Q 007670          162 R--MEVRLERLLKSEVFKAKAAGLVVVGSVIGS-----------------------------------------------  192 (594)
Q Consensus       162 ~--L~~RL~klL~s~~fkaK~alL~aIGSiA~a-----------------------------------------------  192 (594)
                      .  +++.+++.|++++.-+|..++..++.+|..                                               
T Consensus       200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~  279 (503)
T PF10508_consen  200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV  279 (503)
T ss_pred             hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence            3  666666666666666666666666665532                                               


Q ss_pred             C-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH-cC-Ccc----chhhhHHHH-HHHhcchh---H---HHH
Q 007670          193 G-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV-EK-DAV----PEFKGKCLK-IFESKRFD---K---MIE  258 (594)
Q Consensus       193 ~-~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a-~g-d~f----~py~~~~m~-sLEs~RfD---K---~i~  258 (594)
                      . ......++.++..|.+++.+.|-..|..|.|+||.|+.. .| ..+    .+-...+|+ +....+-=   =   +++
T Consensus       280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~  359 (503)
T PF10508_consen  280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH  359 (503)
T ss_pred             ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            0 000112244555556666788999999999999999985 34 444    233344553 33333222   1   777


Q ss_pred             HHhhcC
Q 007670          259 AWKQVP  264 (594)
Q Consensus       259 lWk~i~  264 (594)
                      .+..|=
T Consensus       360 al~~il  365 (503)
T PF10508_consen  360 ALASIL  365 (503)
T ss_pred             HHHHHH
Confidence            777774

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=2.9e-05  Score=86.47  Aligned_cols=256  Identities=15%  Similarity=0.165  Sum_probs=191.2

Q ss_pred             HHHHHHhhcC-CChh-HHHHHHHHHHHHHhhcCC--C-C--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccc
Q 007670            7 TSVNGLLNKL-SDRD-TYSQAAKELDSIAATVDP--T-L--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS   77 (594)
Q Consensus         7 ~rvl~~L~KL-sDrD-T~r~A~~eLD~LA~~Lpp--e-~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~is   77 (594)
                      ..+..+|-|| +|-| +.+-|++.||.+.+.+..  . +  ++.|++.|.+.+...+|..|..-+.-|-++=..-  -+.
T Consensus       124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~  203 (675)
T KOG0212|consen  124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI  203 (675)
T ss_pred             HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence            4456677777 3555 889999999999999732  2 2  8999999999988889999999999999984433  566


Q ss_pred             cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH----hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670           78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ  153 (594)
Q Consensus        78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~----~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~  153 (594)
                      .|||.+++-+..-|.|+...||..|-.+++.+-..+...|...    ...-|...+ +.+++-.|..|..=+..||.-.+
T Consensus       204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g  282 (675)
T KOG0212|consen  204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPG  282 (675)
T ss_pred             hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCC
Confidence            8999999999999999999999999999999888886555432    344444455 57789999999998999999888


Q ss_pred             CCcchhHHHHHHHHHHHhcCCchh-hHHHHHHH---HHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007670          154 DPDAGKLGRMEVRLERLLKSEVFK-AKAAGLVV---VGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR  228 (594)
Q Consensus       154 ~~i~~yL~~L~~RL~klL~s~~fk-aK~alL~a---IGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~  228 (594)
                      ...++|+.+++..++.++.....+ +|......   +-++...+.. -.--+..+|..|..+|.++--++|.++.+=+-.
T Consensus       283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~  362 (675)
T KOG0212|consen  283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL  362 (675)
T ss_pred             cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            888999999999999999877554 44443333   3333322211 113346899999999999999999999999998


Q ss_pred             HHHHcC-Cccc---hhhhHHHHHHHhcchhH----HHHHHhhcC
Q 007670          229 LAVVEK-DAVP---EFKGKCLKIFESKRFDK----MIEAWKQVP  264 (594)
Q Consensus       229 IA~a~g-d~f~---py~~~~m~sLEs~RfDK----~i~lWk~i~  264 (594)
                      +-.-.+ +.+-   +.+.-+++.|.+ +-|.    ++++-..|.
T Consensus       363 l~~~~p~ql~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~  405 (675)
T KOG0212|consen  363 LYHKAPGQLLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASIC  405 (675)
T ss_pred             HHhhCcchhhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHh
Confidence            887654 4333   222333344432 3343    666666665

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.24  E-value=1.2e-05  Score=87.98  Aligned_cols=235  Identities=12%  Similarity=0.115  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA  100 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~  100 (594)
                      ..|++.=.|..++. -+++.+....+.|.....++++..|-.|++.|+.++..    ..++.+++.|.+.|.|+++.||+
T Consensus        58 ~Krl~yl~l~~~~~-~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk  132 (526)
T PF01602_consen   58 LKRLGYLYLSLYLH-EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRK  132 (526)
T ss_dssp             HHHHHHHHHHHHTT-TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHH
T ss_pred             HHHHHHHHHHHHhh-cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHH
Confidence            44555444444433 12333566667776667788888888888888887622    34577888888999999999999


Q ss_pred             HHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHH
Q 007670          101 TCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA  180 (594)
Q Consensus       101 Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~  180 (594)
                      +|+.++..+.....+.....+++.|...| .++++.|+.+|+.+|..+ ..-++.....++.+..+|.+++..++.-.+.
T Consensus       133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~  210 (526)
T PF01602_consen  133 KAALALLKIYRKDPDLVEDELIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQI  210 (526)
T ss_dssp             HHHHHHHHHHHHCHCCHHGGHHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHH
Confidence            99999988888764321111456666655 778888888888888777 2111111256788888888888777777777


Q ss_pred             HHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH---
Q 007670          181 AGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK---  255 (594)
Q Consensus       181 alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK---  255 (594)
                      .++.+++.++...   ....  ..+++.+..+|.+..+.++-.|+.++..+.... +.+......+++.|.+....=   
T Consensus       211 ~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~lL~s~~~nvr~~  286 (526)
T PF01602_consen  211 KILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-ELLQKAINPLIKLLSSSDPNVRYI  286 (526)
T ss_dssp             HHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred             HHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-HHHHhhHHHHHHHhhcccchhehh
Confidence            7777766433221   1222  457788888888777887766666666443211 123334444556665333321   


Q ss_pred             HHHHHhhcCCC
Q 007670          256 MIEAWKQVPDL  266 (594)
Q Consensus       256 ~i~lWk~i~~v  266 (594)
                      +++.-..+...
T Consensus       287 ~L~~L~~l~~~  297 (526)
T PF01602_consen  287 ALDSLSQLAQS  297 (526)
T ss_dssp             HHHHHHHHCCH
T ss_pred             HHHHHHHhhcc
Confidence            66666666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=3e-05  Score=86.28  Aligned_cols=212  Identities=17%  Similarity=0.131  Sum_probs=164.6

Q ss_pred             hHHHHHHHHHHHHHhhcC----CCChHHHHH-hhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhc
Q 007670           20 DTYSQAAKELDSIAATVD----PTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR   92 (594)
Q Consensus        20 DT~r~A~~eLD~LA~~Lp----pe~lp~fLs-~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLk   92 (594)
                      +-++.|+.+|+.+++++-    -++|.-+++ ...++.-++....||.+++.++.++-+-  --.+|+.+||+=|+.-+.
T Consensus        15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~   94 (675)
T KOG0212|consen   15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS   94 (675)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence            368899999999999982    333889999 5589999999999999988887764444  555699999999999999


Q ss_pred             CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcc-h-hHHHHHHHH
Q 007670           93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA-G-KLGRMEVRL  167 (594)
Q Consensus        93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~-yL~~L~~RL  167 (594)
                      |+|..||-=+|+++=.++.-. ++....++.-+|++|-   .+.+.+|+.||=+ |++++.....+-. . .|+.++|-|
T Consensus        95 D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeL-LdRLikdIVte~~~tFsL~~~ipLL  172 (675)
T KOG0212|consen   95 DQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAEL-LDRLIKDIVTESASTFSLPEFIPLL  172 (675)
T ss_pred             CccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHHH-HHHHHHHhccccccccCHHHHHHHH
Confidence            999999999999998888766 2334457777888774   5788889877666 9999877533322 1 355566555


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          168 ERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       168 ~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      -.-+.-.+..++..+++-|--+-.+.+. +..|++.+++-|-.+|.++.-++|..+=-+|+.+-...
T Consensus       173 ~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI  239 (675)
T KOG0212|consen  173 RERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI  239 (675)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            5555555666788899888876666544 35999999999999999999999988887787776654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.21  E-value=4.6e-05  Score=95.82  Aligned_cols=227  Identities=16%  Similarity=0.188  Sum_probs=168.2

Q ss_pred             cCCChhHHHHHHHHHHHHHhh-------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchH
Q 007670           15 KLSDRDTYSQAAKELDSIAAT-------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYIT   81 (594)
Q Consensus        15 KLsDrDT~r~A~~eLD~LA~~-------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLp   81 (594)
                      ...+.|.+.-|+..|..|+.+       + ....+|+|+.+|..    ++...|+.++.+|+.++.+.     .+..  .
T Consensus       414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s----~s~~iQ~~A~~~L~nLa~~ndenr~aIie--a  487 (2102)
T PLN03200        414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL----SSEQQQEYAVALLAILTDEVDESKWAITA--A  487 (2102)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHH--C
Confidence            345678888888888777743       2 23348888887763    56789999999999998655     2211  3


Q ss_pred             HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc-hhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670           82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-AFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA  157 (594)
Q Consensus        82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~  157 (594)
                      -.+|.+++.|+.++..+++.|+++|+.++.+-... ...   -.++||++.| ...++.+|.-|+.+|..++...+..  
T Consensus       488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~--  564 (2102)
T PLN03200        488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAA--  564 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchh--
Confidence            46788888999999999999999999999753211 111   1799999998 6678899999999999998865433  


Q ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc---CC--chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD---GS--GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       158 ~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~---~p--yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                           .++.++.+|.+++.+.+..++.+||.+...+...   ..  -....++.|.+.|.++.-..++.|+.+|+.++..
T Consensus       565 -----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~  639 (2102)
T PLN03200        565 -----TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS  639 (2102)
T ss_pred             -----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence                 3366778899999899999999999987654221   11  1235789999999999999999999999999873


Q ss_pred             cCC-----ccchhhhHHHHHHHhcchhH
Q 007670          233 EKD-----AVPEFKGKCLKIFESKRFDK  255 (594)
Q Consensus       233 ~gd-----~f~py~~~~m~sLEs~RfDK  255 (594)
                      -.+     ....-..+++..|.+..|+-
T Consensus       640 ~~d~~~avv~agaIpPLV~LLss~~~~v  667 (2102)
T PLN03200        640 RQDLCESLATDEIINPCIKLLTNNTEAV  667 (2102)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCChHH
Confidence            222     12233466778888777776

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.20  E-value=1.2e-05  Score=95.12  Aligned_cols=192  Identities=19%  Similarity=0.210  Sum_probs=137.4

Q ss_pred             hHHHHHhhhhcCCCCCC-cchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--
Q 007670           41 LPTFLSCILSTNSSDKP-GVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--  117 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp-~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--  117 (594)
                      ...|++.|..++.+-+. ..|.+||.+|..|+..---..-|.+|+|+++-.+.||+..||-+|+.||..+-....+-+  
T Consensus       420 a~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  420 AVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            44556666555555563 568899999888876554445699999999999999999999999999999887775422  


Q ss_pred             ----hHHhHHHHHHHHccC-CChhHHHHHHHHHHHHHhhc----------------CCC-----c----chhH---HHHH
Q 007670          118 ----FVTMLKLLSDALFTE-QDTNAQVGAALCLAATIDAA----------------QDP-----D----AGKL---GRME  164 (594)
Q Consensus       118 ----~~~~lkPL~eaL~~e-q~k~vQ~~Aa~ALaavvE~l----------------~~~-----i----~~yL---~~L~  164 (594)
                          |.-|+-|-+..|..+ ....|-++=|.||+.+-+.+                .++     +    ..++   ...+
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V  579 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV  579 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence                344888888888766 45556667777777654432                111     1    1133   3344


Q ss_pred             HH-HHHHhcCCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670          165 VR-LERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       165 ~R-L~klL~s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      ++ +..||..+..-+|.+++..|+-+-.= |++  ..-+-+++.|.-||.+.||.+|.|=.|.+.-++..+|
T Consensus       580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence            44 45566666778999999998765421 222  2235678999999999999999999999998888776

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.18  E-value=5.1e-05  Score=95.48  Aligned_cols=232  Identities=15%  Similarity=0.155  Sum_probs=175.7

Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccc---hHHHHHHHHhh
Q 007670           17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPY---ITKIINSITRN   90 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isph---LpkIL~~Ivrr   90 (594)
                      +|...++.|+..|-.++..-+++++++++..+    .++++..+..+++.||.+....   .+...   -...++.+++.
T Consensus       542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LL----lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L  617 (2102)
T PLN03200        542 GGPKGQEIAAKTLTKLVRTADAATISQLTALL----LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL  617 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHhccchhHHHHHHHHh----cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence            56778999999999999887777788877664    4567788999999998885533   11110   13578999999


Q ss_pred             hcCCChhHHHHHHHHHHhhchhhhcchhH--H--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch-hHHH-HH
Q 007670           91 FRDKNSALQATCISTVSSLSPRVGASAFV--T--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG-KLGR-ME  164 (594)
Q Consensus        91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~--~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~-yL~~-L~  164 (594)
                      |+.++..+++-++++|+.++..-.+.+..  .  .++||+..| ...+..+|..||.||..+..+..+.-.. ++.. .+
T Consensus       618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV  696 (2102)
T PLN03200        618 LSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI  696 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence            99999999999999999999866443321  1  899999999 5667778999999999999765443333 3433 78


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--Cccch
Q 007670          165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE  239 (594)
Q Consensus       165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g--d~f~p  239 (594)
                      +.|+++|++++..++..++.+++.++..+..   +..  ...++.|.++|.+..-..|+.|+-+|..++....  +.|..
T Consensus       697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~--~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~  774 (2102)
T PLN03200        697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA--EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD  774 (2102)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHh--cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            8899999999999999999999999976532   232  2458999999999888899999999999998643  44544


Q ss_pred             hh------hHHHHHHHhcchhH
Q 007670          240 FK------GKCLKIFESKRFDK  255 (594)
Q Consensus       240 y~------~~~m~sLEs~RfDK  255 (594)
                      |.      ..++..|++--+|-
T Consensus       775 ~~~~~g~v~~l~~~L~~~~~~~  796 (2102)
T PLN03200        775 SVQCRGTVLALVDLLNSTDLDS  796 (2102)
T ss_pred             HHHHhCcHHHHHHHHhcCCcch
Confidence            43      44455666666665

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.13  E-value=0.0002  Score=84.07  Aligned_cols=199  Identities=17%  Similarity=0.176  Sum_probs=161.0

Q ss_pred             CCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchh
Q 007670           37 DPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPR  112 (594)
Q Consensus        37 ppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~  112 (594)
                      ++.. ++-+-..+..-..+.||..|++++.-|--+.+..   ....+...+...+.-+++|.+..|-.-++..|+.+|.-
T Consensus       246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~  325 (815)
T KOG1820|consen  246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK  325 (815)
T ss_pred             chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence            4444 5555556666688999999999999998887776   67778888888899999999999999999999999988


Q ss_pred             hhcc--hhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670          113 VGAS--AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV  189 (594)
Q Consensus       113 l~~~--~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSi  189 (594)
                      +...  ++.. +++.|++.+ ++..+.+-.++-.|++++++.      -.|-++++-+..++++.+.++|..+..+.+--
T Consensus       326 lr~~~~~~~~~v~p~lld~l-kekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~  398 (815)
T KOG1820|consen  326 LRPLFRKYAKNVFPSLLDRL-KEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRK  398 (815)
T ss_pred             cchhhHHHHHhhcchHHHHh-hhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence            8543  2332 889999999 789999999999999999992      34778889999999999999999988877776


Q ss_pred             HhcCc-C--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC-ccchhhh
Q 007670          190 IGSGA-V--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD-AVPEFKG  242 (594)
Q Consensus       190 A~a~~-~--~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd-~f~py~~  242 (594)
                      ...-+ .  +..-...++|.+.....+.|=++|+||.++++.|..++|+ .|.-|..
T Consensus       399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~  455 (815)
T KOG1820|consen  399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK  455 (815)
T ss_pred             HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            65544 2  2355667788888888889999999999999999999994 5554443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=3e-05  Score=86.37  Aligned_cols=242  Identities=16%  Similarity=0.206  Sum_probs=162.1

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccc
Q 007670            7 TSVNGLLNKLSDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS   77 (594)
Q Consensus         7 ~rvl~~L~KLsDrDT~r~A~~eLD~LA~~L--------ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~is   77 (594)
                      .+++++|.+=.+...+--|+-.|-.||..-        +...+|.|+.++.    ++...+|..|+-+||.++... -+.
T Consensus       112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~~~R  187 (514)
T KOG0166|consen  112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSPDCR  187 (514)
T ss_pred             HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCChHHH
Confidence            455666665444456667777888888742        2333899998887    467789999999999996554 221


Q ss_pred             cch--HHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhh-cchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670           78 PYI--TKIINSITRNFRDKNS-ALQATCISTVSSLSPRVG-ASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDA  151 (594)
Q Consensus        78 phL--pkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~-~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~  151 (594)
                      .|+  ..+|..+.+.|..++. ..++-+.|||..||..-- -+++..  -+.|.+.-|+...|..|..=||.||.-+.++
T Consensus       188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            221  1234444555555554 344456789999999883 223322  2333333334788999999999999999998


Q ss_pred             cCCCcch-hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCC--chHHHHHHHHhhhcC-CcHHHHHHHHHHHH
Q 007670          152 AQDPDAG-KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS--GLKGLVSCLLGFLSS-QDWAARKAAAEALW  227 (594)
Q Consensus       152 l~~~i~~-yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~p--yf~~lm~~L~e~L~s-eDw~lRKaAaDaLg  227 (594)
                      .++.+-- .-..+++||+++|.++..++...+|-+||-|+.......+  .-..++|+|..+|+. ..-..||.||=+|+
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS  347 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS  347 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence            7776632 3345999999999999999998899999986654433321  112367889999984 44558999999999


Q ss_pred             HHHHHc--------CCccchhhhHHHHHHHhcchhH
Q 007670          228 RLAVVE--------KDAVPEFKGKCLKIFESKRFDK  255 (594)
Q Consensus       228 ~IA~a~--------gd~f~py~~~~m~sLEs~RfDK  255 (594)
                      -|+.--        -..+.   ..++..|++.-||=
T Consensus       348 NItAG~~~qiqaVida~l~---p~Li~~l~~~ef~~  380 (514)
T KOG0166|consen  348 NITAGNQEQIQAVIDANLI---PVLINLLQTAEFDI  380 (514)
T ss_pred             HhhcCCHHHHHHHHHcccH---HHHHHHHhccchHH
Confidence            988721        12333   44556666666665

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.12  E-value=0.00017  Score=80.55  Aligned_cols=215  Identities=14%  Similarity=0.161  Sum_probs=149.0

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcC-CCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670            4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-PTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI   80 (594)
Q Consensus         4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lp-pe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL   80 (594)
                      +|.+..|..|..   .+..--++.+|..-+..-+ -+.  .+.++.|+...    +...=..+...|..+-.......-+
T Consensus         3 ~~~~~~l~~l~~---~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~~~~l~   75 (503)
T PF10508_consen    3 EWINELLEELSS---KAERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALSPDSLL   75 (503)
T ss_pred             hHHHHHHHHHhc---ccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccCHHHHH
Confidence            344444444433   3444444555555444333 222  34577777743    3333345556666665555333348


Q ss_pred             HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch----hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc
Q 007670           81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD  156 (594)
Q Consensus        81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~----~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i  156 (594)
                      +.+.+++.++|.-|++.||.-|+.++++++.+-....    ...++..++..| .+.+..|...|+.+|..+...-    
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~----  150 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHP----  150 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCc----
Confidence            9999999999999999999999999999987663211    112677777777 7889999999999999998742    


Q ss_pred             chhHHHH-----HHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670          157 AGKLGRM-----EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRL  229 (594)
Q Consensus       157 ~~yL~~L-----~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~I  229 (594)
                       +++..|     ...|..++..++-.+|--++.++..++....+...+..  .+++.+...|.++|--+|..|+|.|+.|
T Consensus       151 -~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L  229 (503)
T PF10508_consen  151 -EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL  229 (503)
T ss_pred             -hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence             233333     78888888885555666688898888876655443333  3889999999999999999999999999


Q ss_pred             HH
Q 007670          230 AV  231 (594)
Q Consensus       230 A~  231 (594)
                      |.
T Consensus       230 a~  231 (503)
T PF10508_consen  230 AE  231 (503)
T ss_pred             Hc
Confidence            98

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.11  E-value=1.8e-05  Score=66.22  Aligned_cols=88  Identities=17%  Similarity=0.282  Sum_probs=70.6

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      |+.|+..|..   ++++.+|.+++.+||.+        .-++.++.+++.++|+++.||.+++.+||.+...-       
T Consensus         1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~-------   62 (88)
T PF13646_consen    1 IPALLQLLQN---DPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIGDPE-------   62 (88)
T ss_dssp             HHHHHHHHHT---SSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH-------
T ss_pred             CHHHHHHHhc---CCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-------
Confidence            4566666643   67899999999999933        34578999999999999999999999999996433       


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHH
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLA  146 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALa  146 (594)
                      .+..|.+.|.++.+..++..|+.+|+
T Consensus        63 ~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   63 AIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            77888888866678888988888874

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=2.9e-05  Score=88.35  Aligned_cols=185  Identities=19%  Similarity=0.236  Sum_probs=131.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670           52 NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL  129 (594)
Q Consensus        52 ~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL  129 (594)
                      .++.+|++||-||.+|=-++.-+  .+.|-.|++    +.+|.|||++|..|++..+--||..-.+.  ..-|-|+|.-|
T Consensus       153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPkn--yL~LAP~ffkl  226 (877)
T KOG1059|consen  153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQN--YLQLAPLFYKL  226 (877)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCcc--cccccHHHHHH
Confidence            45789999999999998888777  888887764    68999999999999887666665544221  22456666666


Q ss_pred             ccCCChh-HHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhcC---c--CcCCchHH
Q 007670          130 FTEQDTN-AQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSG---A--VDGSGLKG  202 (594)
Q Consensus       130 ~~eq~k~-vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~klL~s~~fkaK~alL~aIGSiA~a~---~--~~~pyf~~  202 (594)
                      +....-| +-+.    |-++.-++ .++.|.|++ |++.|..++++-  .|...++.||-.|+.+.   |  .......-
T Consensus       227 lttSsNNWmLIK----iiKLF~aL-tplEPRLgKKLieplt~li~sT--~AmSLlYECvNTVVa~s~s~g~~d~~asiqL  299 (877)
T KOG1059|consen  227 LVTSSNNWVLIK----LLKLFAAL-TPLEPRLGKKLIEPITELMEST--VAMSLLYECVNTVVAVSMSSGMSDHSASIQL  299 (877)
T ss_pred             HhccCCCeehHH----HHHHHhhc-cccCchhhhhhhhHHHHHHHhh--HHHHHHHHHHHHheeehhccCCCCcHHHHHH
Confidence            6433222 2211    22222222 233466655 999999999555  48889999999988662   1  11233444


Q ss_pred             HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670          203 LVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       203 lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE  249 (594)
                      .++.|..|+.++|..++=.++-||+.|+-.+...++.+++=+++.|.
T Consensus       300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~  346 (877)
T KOG1059|consen  300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD  346 (877)
T ss_pred             HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence            67888889999999999999999999999988888877766667664

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.08  E-value=0.00028  Score=76.87  Aligned_cols=204  Identities=16%  Similarity=0.164  Sum_probs=164.0

Q ss_pred             hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh--cccc
Q 007670            3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH--NLSP   78 (594)
Q Consensus         3 ~~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h--~isp   78 (594)
                      +++.++++.....-.|..++..+++.|=.|+.-++.+. +..+|..+.+.. ....+..|..++..+.-+..+-  --.|
T Consensus       188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~  267 (415)
T PF12460_consen  188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP  267 (415)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence            46778888888888888888889999999999987776 888888887776 6677889999999998887777  5567


Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc---------------ch-hHHhHHHHHHHHccCCChhHHHHHH
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---------------SA-FVTMLKLLSDALFTEQDTNAQVGAA  142 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~---------------~~-~~~~lkPL~eaL~~eq~k~vQ~~Aa  142 (594)
                      .-.+++..++..|.|  +.+...++.+++.|.....+               |- |..++++|++.. .+.+......-.
T Consensus       268 ~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~~~k~~yL  344 (415)
T PF12460_consen  268 LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADDEIKSNYL  344 (415)
T ss_pred             hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH-hhcChhhHHHHH
Confidence            788888888999977  77788899999998877432               11 233677777777 444444666778


Q ss_pred             HHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHh
Q 007670          143 LCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLG  209 (594)
Q Consensus       143 ~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e  209 (594)
                      .||.-++.+++..+ .+++++|+|-|++.|+.++..++.+.|.++-.+..-..+ +.+|+..+|+.|..
T Consensus       345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK  413 (415)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            89999999999776 689999999999999999988999999988888855544 35899989988864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0011  Score=79.25  Aligned_cols=227  Identities=18%  Similarity=0.181  Sum_probs=170.4

Q ss_pred             HHHHHHHHH---HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh--h--ccccchHHHHHHHHhhhcCCC
Q 007670           23 SQAAKELDS---IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--H--NLSPYITKIINSITRNFRDKN   95 (594)
Q Consensus        23 r~A~~eLD~---LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~--h--~isphLpkIL~~IvrrLkD~D   95 (594)
                      ...++.||.   ||...+.+++..++.....+.++..+.++|-+.++|+.+++.  +  ++..++.-|...+...+++..
T Consensus       631 ~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~  710 (1176)
T KOG1248|consen  631 FKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS  710 (1176)
T ss_pred             HHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc
Confidence            344455554   566667777888887778888888889999999999999877  3  888999999999999999999


Q ss_pred             hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc--cCCChhHHHHHHHHHHHHH--hhc----CCCcchhHHHHHHHH
Q 007670           96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALF--TEQDTNAQVGAALCLAATI--DAA----QDPDAGKLGRMEVRL  167 (594)
Q Consensus        96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~--~eq~k~vQ~~Aa~ALaavv--E~l----~~~i~~yL~~L~~RL  167 (594)
                      ..+|...+.+|-.|-+.+...-...+.+-+-|+++  .+.+-..-..|+-||--+.  ...    .++....+...+.-|
T Consensus       711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~I  790 (1176)
T KOG1248|consen  711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSII  790 (1176)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence            99999999999988887742222335666666665  3344445557777777766  332    222234666666666


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHH
Q 007670          168 ERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKC  244 (594)
Q Consensus       168 ~klL~s~~fkaK~alL~aIGSiA~a~~~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~  244 (594)
                      ...|-.+..+.++.-|-+|+.+..--+..  .+++..++..+..||.++--+.|++|+..+..+..... ..+.||.+.+
T Consensus       791 sagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~L  870 (1176)
T KOG1248|consen  791 SAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEEL  870 (1176)
T ss_pred             HhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH
Confidence            66666666665555577888877554443  39999999999999999999999999999999988877 6899998888


Q ss_pred             HHHHH
Q 007670          245 LKIFE  249 (594)
Q Consensus       245 m~sLE  249 (594)
                      |-++=
T Consensus       871 L~sll  875 (1176)
T KOG1248|consen  871 LPSLL  875 (1176)
T ss_pred             HHHHH
Confidence            85443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.96  E-value=0.00053  Score=80.25  Aligned_cols=245  Identities=17%  Similarity=0.247  Sum_probs=175.7

Q ss_pred             hhHHHHHHHHHHHHHhhcCC--------CChHHHHHhhhhcCCC--CCCcchHHHHHHHHHHHhhh--ccccchHHHHHH
Q 007670           19 RDTYSQAAKELDSIAATVDP--------TLLPTFLSCILSTNSS--DKPGVRKECIHVIATLSNSH--NLSPYITKIINS   86 (594)
Q Consensus        19 rDT~r~A~~eLD~LA~~Lpp--------e~lp~fLs~L~e~~ss--~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~   86 (594)
                      ||+..++   |.....++||        ..++.|++.+.+++.-  +....|=+++-.|+.+-.-+  ++-++=..|+-+
T Consensus       102 rdissi~---Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~  178 (1233)
T KOG1824|consen  102 RDISSIG---LKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKC  178 (1233)
T ss_pred             ccHHHHH---HHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHH
Confidence            4455554   4555666665        3388889988887554  44567888888888875555  777777888889


Q ss_pred             HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHH-HHHHHHHHHHhhcCCCcchhHHHHHH
Q 007670           87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQV-GAALCLAATIDAAQDPDAGKLGRMEV  165 (594)
Q Consensus        87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~-~Aa~ALaavvE~l~~~i~~yL~~L~~  165 (594)
                      +.-.|.-+-..||+=++.++|.++..+.+.-+.-+..-|+..| +...+..+. .-..||++++-.++.....++++++|
T Consensus       179 l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L-~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp  257 (1233)
T KOG1824|consen  179 LLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGL-SNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVP  257 (1233)
T ss_pred             HhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhH
Confidence            9989999999999999999999999984332222444444444 333334443 67889999999999988889999999


Q ss_pred             HHHHHh---cCCchhhHHHHHHHHHHHH-hcCcCcCCchHHHHHHHHhhhcC----------------------------
Q 007670          166 RLERLL---KSEVFKAKAAGLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSS----------------------------  213 (594)
Q Consensus       166 RL~klL---~s~~fkaK~alL~aIGSiA-~a~~~~~pyf~~lm~~L~e~L~s----------------------------  213 (594)
                      -+....   +.++=..+...|.++++.. ....+..||.+.++..+.+|++-                            
T Consensus       258 ~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de  337 (1233)
T KOG1824|consen  258 LVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE  337 (1233)
T ss_pred             HHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc
Confidence            888888   6667778999999999987 45566789999999999988751                            


Q ss_pred             ----C--cHHHHHHHHHHHHHHHHHcCCccchhhhHH----H----HHHHhcchhH---HHHHHhhcCCCC
Q 007670          214 ----Q--DWAARKAAAEALWRLAVVEKDAVPEFKGKC----L----KIFESKRFDK---MIEAWKQVPDLS  267 (594)
Q Consensus       214 ----e--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~----m----~sLEs~RfDK---~i~lWk~i~~v~  267 (594)
                          +  .|-+|.||+-+|..+-..-.|.+..+...+    +    .-+|+-+.|=   =+.+.++++.+-
T Consensus       338 YsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~  408 (1233)
T KOG1824|consen  338 YSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI  408 (1233)
T ss_pred             cccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence                0  199999999999988775444444333222    2    1334444444   456677776554

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.00028  Score=85.63  Aligned_cols=215  Identities=18%  Similarity=0.189  Sum_probs=153.0

Q ss_pred             HHHHHHHHhhc-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHH
Q 007670           26 AKELDSIAATV-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATC  102 (594)
Q Consensus        26 ~~eLD~LA~~L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac  102 (594)
                      .+||=.||..| .|+-+--||+.--   .+--|.-||.+--=||++++..  .+.||+++++|-+.|-=-|||..|++|-
T Consensus       942 YKELc~LASdl~qPdLVYKFM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM 1018 (1702)
T KOG0915|consen  942 YKELCNLASDLGQPDLVYKFMQLAN---HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAM 1018 (1702)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHhh---hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHH
Confidence            57999999999 5666888887653   3456889999999999998888  9999999999999999999999999886


Q ss_pred             HHHHHhhchhhhcchhHH-hHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCCchh
Q 007670          103 ISTVSSLSPRVGASAFVT-MLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFK  177 (594)
Q Consensus       103 ~~ALG~LAe~l~~~~~~~-~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL~s~~fk  177 (594)
                      -.--+.|-..-  ...+. |++=+++-|+   +...=-|-.++|+||.-++++=+-+ ..+.+|+|-.-+++..+.=.=-
T Consensus      1019 ~sIW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1019 TSIWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred             HHHHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555544332  11111 4444444443   4555668889999999999985432 3678889888888888432222


Q ss_pred             hHHH---HHHHHHHHH-hcC----cCc-CCchHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670          178 AKAA---GLVVVGSVI-GSG----AVD-GSGLKGLVSCLLGF-LSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL  245 (594)
Q Consensus       178 aK~a---lL~aIGSiA-~a~----~~~-~pyf~~lm~~L~e~-L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m  245 (594)
                      ++.|   +..+|+.+. ...    +.. ...++.++|+|.+- ..+.--++|+.++-+|..|+-..|..+.||...++
T Consensus      1097 VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1097 VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLI 1174 (1702)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHH
Confidence            4444   334444433 221    111 24455555555443 23667899999999999999999988889887666

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.00026  Score=79.09  Aligned_cols=209  Identities=12%  Similarity=0.134  Sum_probs=156.8

Q ss_pred             CChhHHHHHHHHHHHHHhhc--CC------CC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchHH
Q 007670           17 SDRDTYSQAAKELDSIAATV--DP------TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYITK   82 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~L--pp------e~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLpk   82 (594)
                      +|.+.+..|++.+..+...-  ||      .. +|.|..|+.   .+.+|..+.++--+|..+|.|-     .+..  ..
T Consensus        78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~---~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--ag  152 (514)
T KOG0166|consen   78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS---RDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AG  152 (514)
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc---cCCChhHHHHHHHHHHHHhcCchhhcccccc--CC
Confidence            35556677777777755443  21      13 777777776   3456788999999999998866     2222  24


Q ss_pred             HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH----HhHHHHHHHHccCCCh-hHHHHHHHHHHHHHhhcC-CCc
Q 007670           83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQDT-NAQVGAALCLAATIDAAQ-DPD  156 (594)
Q Consensus        83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~----~~lkPL~eaL~~eq~k-~vQ~~Aa~ALaavvE~l~-~~i  156 (594)
                      -+|..++.|..|+..||+-|++|||.+|.+...-...    ..|.||+..|. ..++ ..-..+.-+|-.+|.+-. .+.
T Consensus       153 avp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~-~~~~~~~lRn~tW~LsNlcrgk~P~P~  231 (514)
T KOG0166|consen  153 AVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN-KSDKLSMLRNATWTLSNLCRGKNPSPP  231 (514)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc-cccchHHHHHHHHHHHHHHcCCCCCCc
Confidence            5677899999999999999999999999988543222    28999999994 3333 344578999999999974 444


Q ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      ...+..++|=|.++|.+.+..+..-+.-||+-++-...+..+++  ..++|.|++.|...+-.++-.|+-++|-|++
T Consensus       232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence            67889999999999999998887777777777664443332222  2368999999999999999999999999876

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.0004  Score=76.74  Aligned_cols=197  Identities=21%  Similarity=0.242  Sum_probs=155.4

Q ss_pred             hcCCChhHHHHHHHHHHH-HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccc--cchHHHHHHHHhh
Q 007670           14 NKLSDRDTYSQAAKELDS-IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLS--PYITKIINSITRN   90 (594)
Q Consensus        14 ~KLsDrDT~r~A~~eLD~-LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~is--phLpkIL~~Ivrr   90 (594)
                      +-|+|.|++++.+..|-. |+.+=++ .++-+|.++.+.+.+.++..|-..+--|+-+...-.+-  +.|...+-++-.+
T Consensus       188 ~qls~~~~h~~g~trlqr~m~~~~~~-~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~k  266 (533)
T KOG2032|consen  188 SQLSDNDIHRVGLTRLQRFMACVQDL-EMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANK  266 (533)
T ss_pred             hhcccCcccHHHHHHHHHHHHhhCCc-cHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHh
Confidence            457888999999998887 5554343 47888888888899999999988877777766555444  6799999999999


Q ss_pred             hcCCChhHHHHHHHHHHhhchhhhcchhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHH
Q 007670           91 FRDKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVR  166 (594)
Q Consensus        91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~R  166 (594)
                      .+||+..+|.-|+-.||.+++.+.+....   ..+--++-.|.++.++.||--|..||..++|-+... ..+|+-.+--|
T Consensus       267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr  346 (533)
T KOG2032|consen  267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR  346 (533)
T ss_pred             ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence            99999999999999999999997543311   255556666666778999999999999999997544 47899999999


Q ss_pred             HHHHhcCCchhhHHHHHHHHHHHHhc-CcCcC-CchHHHHHHHHhhh
Q 007670          167 LERLLKSEVFKAKAAGLVVVGSVIGS-GAVDG-SGLKGLVSCLLGFL  211 (594)
Q Consensus       167 L~klL~s~~fkaK~alL~aIGSiA~a-~~~~~-pyf~~lm~~L~e~L  211 (594)
                      +..++++..-+++.+.+.+.|.++.. |+.-. -+.+++...+..+|
T Consensus       347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll  393 (533)
T KOG2032|consen  347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL  393 (533)
T ss_pred             HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence            99999999999999999999998854 33332 34444555666664

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.84  E-value=0.00098  Score=72.64  Aligned_cols=223  Identities=16%  Similarity=0.170  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHhhcCCCC-hHH---HHHhhhhc-CCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhh-cCCCh
Q 007670           23 SQAAKELDSIAATVDPTL-LPT---FLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNF-RDKNS   96 (594)
Q Consensus        23 r~A~~eLD~LA~~Lppe~-lp~---fLs~L~e~-~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrL-kD~Ds   96 (594)
                      +--+-.+-.+...|+++. +|-   +++.+.+. ..+.++..|..+..+++.++-=+.-...+..++..+...+ ...++
T Consensus       165 ~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~  244 (415)
T PF12460_consen  165 SRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDS  244 (415)
T ss_pred             ccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCc
Confidence            333444555666777666 443   44444333 4455589999999999999877633346777777777766 66667


Q ss_pred             hHHHHHHHHHHhhchhhh-c-chhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-------cc------hhH
Q 007670           97 ALQATCISTVSSLSPRVG-A-SAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-------DA------GKL  160 (594)
Q Consensus        97 ~VR~Ac~~ALG~LAe~l~-~-~~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-------i~------~yL  160 (594)
                      ..|..+...+.-++.-+. + .+.. .++.-|++.| +  ++.+-..||-++.-++.-.++.       .+      -++
T Consensus       245 ~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~--~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F  321 (415)
T PF12460_consen  245 ELRPQALEILIWITKALVMRGHPLATELLDKLLELL-S--SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF  321 (415)
T ss_pred             chhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-C--ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence            788888888877776664 2 2333 3777777777 3  3556667777777776652211       11      134


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccc
Q 007670          161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP  238 (594)
Q Consensus       161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~-a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~  238 (594)
                      ..++|+|.+.++..+-..|...+.|++.+.. +.... .++++.++|.|.+.|..+|..+|.+++++|..+.....+.+.
T Consensus       322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~  401 (415)
T PF12460_consen  322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS  401 (415)
T ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence            6688899999888776689999999999884 44443 499999999999999999999999999999999998888999


Q ss_pred             hhhhHHHHHH
Q 007670          239 EFKGKCLKIF  248 (594)
Q Consensus       239 py~~~~m~sL  248 (594)
                      +|...++..|
T Consensus       402 ~hl~sLI~~L  411 (415)
T PF12460_consen  402 EHLSSLIPRL  411 (415)
T ss_pred             HHHHHHHHHH
Confidence            9988888654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.83  E-value=5.2e-05  Score=65.55  Aligned_cols=106  Identities=14%  Similarity=0.245  Sum_probs=81.1

Q ss_pred             ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH-HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc
Q 007670           40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS  116 (594)
Q Consensus        40 ~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp-kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~  116 (594)
                      .++.++..+.+.    ++..|+.++.+|+.++...  .....+. .+++.+++.|.|+++.|+..|+.+|+.|+..-...
T Consensus         8 ~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~   83 (120)
T cd00020           8 GLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN   83 (120)
T ss_pred             ChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence            377778877643    4889999999999998763  2223334 78888999999999999999999999999876322


Q ss_pred             hhH--H--hHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670          117 AFV--T--MLKLLSDALFTEQDTNAQVGAALCLAATID  150 (594)
Q Consensus       117 ~~~--~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE  150 (594)
                      ...  .  +++-|+..| ++.+..++..|+.+|..++|
T Consensus        84 ~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          84 KLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            211  1  566677766 66688899999999988764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.80  E-value=0.00064  Score=70.93  Aligned_cols=58  Identities=26%  Similarity=0.221  Sum_probs=38.0

Q ss_pred             HHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       167 L~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      +...+..+.--++.++..++|.+..-.       ..+.+.+...+.+++|.+|+.++.+||.+..
T Consensus       185 l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         185 LIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence            444454444455566665665433111       4566788888888999999999998887743

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.76  E-value=0.00037  Score=78.62  Aligned_cols=219  Identities=16%  Similarity=0.111  Sum_probs=145.2

Q ss_pred             HhhcCCChh--HHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCcchHHHHHHHHHH--HhhhccccchHH
Q 007670           12 LLNKLSDRD--TYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITK   82 (594)
Q Consensus        12 ~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~-----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl--ae~h~isphLpk   82 (594)
                      +|+-++|.-  -.++++...+.+...|+-..     ...++..|+-++++++... +--+-+|+++  +-+....|||+.
T Consensus       526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~  604 (975)
T COG5181         526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSM  604 (975)
T ss_pred             HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHH
Confidence            445555433  24456666677776665222     4455555655555554332 2334556664  333388999999


Q ss_pred             HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH---H-hHHHHHHHHccCCChhHHH---HHHHHHHHHHhhcCCC
Q 007670           83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV---T-MLKLLSDALFTEQDTNAQV---GAALCLAATIDAAQDP  155 (594)
Q Consensus        83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~-~lkPL~eaL~~eq~k~vQ~---~Aa~ALaavvE~l~~~  155 (594)
                      |++.|.++|+.+-+-||.-+++.+|.|+--+-...+.   . +=.-|.|.| |+..|.+-.   +|..|+-.+..--  .
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~--~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL-GEDYPEVLGSILKAICSIYSVHRFR--S  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc-CcccHHHHHHHHHHHHHHhhhhccc--c
Confidence            9999999999999999999999999999887432221   2 334466777 788888775   5555555554431  1


Q ss_pred             cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       156 i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      .-|-...|+|+|.-.|++.+-|+.+-.+..+|.|+.-+.+..+.=+|  +-=-|.+.|.+-.-..|.+|.+++|.|+.++
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            11233456667777899999998888888899888555443221111  2233566677777889999999999999998


Q ss_pred             C
Q 007670          234 K  234 (594)
Q Consensus       234 g  234 (594)
                      |
T Consensus       762 G  762 (975)
T COG5181         762 G  762 (975)
T ss_pred             C
Confidence            8

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.75  E-value=0.00043  Score=66.95  Aligned_cols=137  Identities=14%  Similarity=0.202  Sum_probs=93.8

Q ss_pred             CCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC
Q 007670           56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ  133 (594)
Q Consensus        56 kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq  133 (594)
                      +|.+|--++.++|-+|--|  ++    ++.++.+...|+|+++.||..|+..|..|...-.-.....++--++..| .|.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l-~D~   75 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL-VDE   75 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-cCC
Confidence            4678999999999998888  54    4556677799999999999999999998764421111222445555555 788


Q ss_pred             ChhHHHHHHHHHHHHHhhc-CCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007670          134 DTNAQVGAALCLAATIDAA-QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS  212 (594)
Q Consensus       134 ~k~vQ~~Aa~ALaavvE~l-~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~  212 (594)
                      ++.++..|..++..+.... +..+...++.++-.|-....++.+                +.....-+..++..|.+++.
T Consensus        76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~----------------~~~~~~~~~~I~~fll~~i~  139 (178)
T PF12717_consen   76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVY----------------GPLSREKRKKIYKFLLDFID  139 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccc----------------cccCHHHHHHHHHHHHHHcC
Confidence            9999999999999998874 333455666666666655544433                11112345566666666666


Q ss_pred             C
Q 007670          213 S  213 (594)
Q Consensus       213 s  213 (594)
                      .
T Consensus       140 ~  140 (178)
T PF12717_consen  140 K  140 (178)
T ss_pred             c
Confidence            3

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0013  Score=77.34  Aligned_cols=184  Identities=17%  Similarity=0.209  Sum_probs=130.9

Q ss_pred             HHHHHH-HHHHhhcCCCChHHHHHhhhhcCC--------CCCCcchHHHHHHHHHHHhhh-cccc---chHHHH-HHHHh
Q 007670           24 QAAKEL-DSIAATVDPTLLPTFLSCILSTNS--------SDKPGVRKECIHVIATLSNSH-NLSP---YITKII-NSITR   89 (594)
Q Consensus        24 ~A~~eL-D~LA~~Lppe~lp~fLs~L~e~~s--------s~kp~~RKaaI~lLGvlae~h-~isp---hLpkIL-~~Ivr   89 (594)
                      .|+..+ -.++.-=-.+.||.+|+.+.+-+.        ..++..+..|++.+|.||+.- --+|   +|+.|+ ++|.=
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP  469 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP  469 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence            344443 344444446667777777655433        344556677999999999766 3344   577665 47788


Q ss_pred             hhcCCChhHHHHHHHHHHhhch-hhhcch-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---cchhHHHHH
Q 007670           90 NFRDKNSALQATCISTVSSLSP-RVGASA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKLGRME  164 (594)
Q Consensus        90 rLkD~Ds~VR~Ac~~ALG~LAe-~l~~~~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~---i~~yL~~L~  164 (594)
                      .+++|---+|.=+|+.++++++ ...++. +...+.-....|.++++-.|+.-||.||..+|.+....   +.++++.+|
T Consensus       470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m  549 (1010)
T KOG1991|consen  470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM  549 (1010)
T ss_pred             hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence            8999999999999999999994 443333 33377777778877889999999999999999997643   578999999


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhh
Q 007670          165 VRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGF  210 (594)
Q Consensus       165 ~RL~klL~s~~fkaK~alL~aIGSiA~-a~~~~~pyf~~lm~~L~e~  210 (594)
                      +.|+++.+.=....   +..++-+++. =+.+..||...+++.|.+.
T Consensus       550 q~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~  593 (1010)
T KOG1991|consen  550 QELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAET  593 (1010)
T ss_pred             HHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            99999996543332   4445555552 2445569988888888764

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.68  E-value=0.00035  Score=58.42  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=66.6

Q ss_pred             HHHHHhhh-cCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH
Q 007670           84 INSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR  162 (594)
Q Consensus        84 L~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~  162 (594)
                      |+.+++.| +|+++.||..++.+||.+...-       .++.|++.| .+.++.++..|+.+|..+-          -+.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~-------~~~~L~~~l-~d~~~~vr~~a~~aL~~i~----------~~~   62 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDPE-------AIPALIELL-KDEDPMVRRAAARALGRIG----------DPE   62 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHH-------HHHHHHHHH-TSSSHHHHHHHHHHHHCCH----------HHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHh-------HHHHHHHHH-cCCCHHHHHHHHHHHHHhC----------CHH
Confidence            57788888 9999999999999999665443       677788877 7899999999999998763          245


Q ss_pred             HHHHHHHHhcCC-chhhHHHHHHHHH
Q 007670          163 MEVRLERLLKSE-VFKAKAAGLVVVG  187 (594)
Q Consensus       163 L~~RL~klL~s~-~fkaK~alL~aIG  187 (594)
                      .++.|.+++.++ ...++.+++.++|
T Consensus        63 ~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   63 AIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            666777777665 5556777777665

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.67  E-value=0.0014  Score=76.80  Aligned_cols=244  Identities=16%  Similarity=0.175  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHHHHhhcC---CCChHHHHHhhhhc--CCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhc
Q 007670           21 TYSQAAKELDSIAATVD---PTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFR   92 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lp---pe~lp~fLs~L~e~--~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLk   92 (594)
                      |...++..|-.++..+|   .+.++.+++-|.-.  +.+.-...++.++--+-.+-..|   -+.||++.|.|.++-...
T Consensus       451 t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~  530 (1233)
T KOG1824|consen  451 TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG  530 (1233)
T ss_pred             chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc
Confidence            88888999999999987   23344444444222  22223346666665554443344   889999999999999999


Q ss_pred             CCChhHHHHHHHHHHhhchhhhc-ch---h--HHhHHHHHHHHc-----cCCChhHHHHHHHHHHHHHhhcCCCcchhHH
Q 007670           93 DKNSALQATCISTVSSLSPRVGA-SA---F--VTMLKLLSDALF-----TEQDTNAQVGAALCLAATIDAAQDPDAGKLG  161 (594)
Q Consensus        93 D~Ds~VR~Ac~~ALG~LAe~l~~-~~---~--~~~lkPL~eaL~-----~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~  161 (594)
                      ||=..|-.-++-+.++|+..+-. ++   +  ..++++++...+     .+.|..|-.+|..|+--+|-+.+|....-|+
T Consensus       531 d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~  610 (1233)
T KOG1824|consen  531 DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELP  610 (1233)
T ss_pred             CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            99999988888899999988853 12   2  238888887765     4779999999999999999888877666667


Q ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccch
Q 007670          162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE  239 (594)
Q Consensus       162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~p  239 (594)
                      ..++-|++-|.+.-  .+-+++-|+.-||.++=.+  .|.+..+++.|..|+......+|-+...++-.+....++.+..
T Consensus       611 ~~L~il~eRl~nEi--TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~  688 (1233)
T KOG1824|consen  611 RTLPILLERLGNEI--TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA  688 (1233)
T ss_pred             HHHHHHHHHHhchh--HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            76666777676553  3334445555566555444  3999999999999999999999999999999999999999998


Q ss_pred             hhhHHH-HHHHhc--chhH-----HHHHHhhcCCC
Q 007670          240 FKGKCL-KIFESK--RFDK-----MIEAWKQVPDL  266 (594)
Q Consensus       240 y~~~~m-~sLEs~--RfDK-----~i~lWk~i~~v  266 (594)
                      +.-+++ .=+-..  --|+     |+.+.+.+..+
T Consensus       689 ~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~  723 (1233)
T KOG1824|consen  689 ELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII  723 (1233)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            865554 111111  1133     77777766655

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.67  E-value=0.00014  Score=62.85  Aligned_cols=109  Identities=28%  Similarity=0.185  Sum_probs=83.1

Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-C
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-S  198 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-p  198 (594)
                      ++++|++.| .+.+..+...|+.||..+....++....++. .+++.|.++|++++.+++..++.+++.++....... -
T Consensus         8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            566777766 4566778888888888888764333333444 588889999999999999999999999986553322 1


Q ss_pred             ch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          199 GL-KGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       199 yf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      +. ..+++.|.++|...+..+|..|+.+|..|+
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            12 236899999999999999999999999876

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.61  E-value=0.0006  Score=67.17  Aligned_cols=106  Identities=18%  Similarity=0.240  Sum_probs=85.2

Q ss_pred             hhhcCCChhHHHHHHHHHHhhchhhhc------------c---hhHH--------hHHHHHHHHccCCChhHHHHHHHHH
Q 007670           89 RNFRDKNSALQATCISTVSSLSPRVGA------------S---AFVT--------MLKLLSDALFTEQDTNAQVGAALCL  145 (594)
Q Consensus        89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~------------~---~~~~--------~lkPL~eaL~~eq~k~vQ~~Aa~AL  145 (594)
                      -.++||++.||.|++.++..|=+..-.            .   +++.        +=.=|+-+|..|++..+....+-||
T Consensus        47 ~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l  126 (182)
T PF13251_consen   47 CILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL  126 (182)
T ss_pred             HHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            457899999999999999998766521            0   1211        3344555555788888999999999


Q ss_pred             HHHHhhcCCCc--chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc
Q 007670          146 AATIDAAQDPD--AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA  194 (594)
Q Consensus       146 aavvE~l~~~i--~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~  194 (594)
                      +.+|++.++.-  .+++++++..+..++.+.+..++.+.+.++|.++++..
T Consensus       127 a~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  127 AVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            99999998774  56899999999999999999999999999999987653

>PTZ00429 beta-adaptin; Provisional

Probab=97.47  E-value=0.011  Score=69.56  Aligned_cols=194  Identities=13%  Similarity=0.077  Sum_probs=95.4

Q ss_pred             CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc
Q 007670           38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS  116 (594)
Q Consensus        38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~  116 (594)
                      |+-++.++..|.....+.+|++||.|++++.-+-... -+. .-..+++.+.+.|.|+|+.|...|+.+|-.+.+...+.
T Consensus       135 ~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~  213 (746)
T PTZ00429        135 SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK  213 (746)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence            3335555555555555566666666666665553322 110 01123344444556666666656555555554433110


Q ss_pred             --hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc
Q 007670          117 --AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA  194 (594)
Q Consensus       117 --~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~  194 (594)
                        .....+.-|+..| .+-+.-.|.   +.|..+...-+.. ..-...++.++...|.|.+.   +.+++|+..+..-..
T Consensus       214 l~l~~~~~~~Ll~~L-~e~~EW~Qi---~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~---AVVl~Aik~il~l~~  285 (746)
T PTZ00429        214 IESSNEWVNRLVYHL-PECNEWGQL---YILELLAAQRPSD-KESAETLLTRVLPRMSHQNP---AVVMGAIKVVANLAS  285 (746)
T ss_pred             hHHHHHHHHHHHHHh-hcCChHHHH---HHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcC
Confidence              0011233333333 333444443   3333332221111 12234677777777777663   346666666554332


Q ss_pred             Cc-CCchHHHHHHHHh---hhcCCcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670          195 VD-GSGLKGLVSCLLG---FLSSQDWAARKAAAEALWRLAVVEKDAVPEF  240 (594)
Q Consensus       195 ~~-~pyf~~lm~~L~e---~L~seDw~lRKaAaDaLg~IA~a~gd~f~py  240 (594)
                      .. ......++..|..   +|.+.+-.+|=.++..|..|+......|.++
T Consensus       286 ~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~  335 (746)
T PTZ00429        286 RCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTN  335 (746)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHH
Confidence            11 1122232222222   4556677888889988888887766666665

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.47  E-value=0.00033  Score=62.25  Aligned_cols=82  Identities=15%  Similarity=0.257  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCCh
Q 007670           22 YSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNS   96 (594)
Q Consensus        22 ~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds   96 (594)
                      .+-|+--|-.+|..|+.+-   ++.+++-+...+.++++.+|-++..+|..++..+  .+-+|++.|+..+.+.+.|+|+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~   82 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE   82 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            3556666777777775432   7777777777788899999999999999999888  6678999999999999999999


Q ss_pred             hHHHHHH
Q 007670           97 ALQATCI  103 (594)
Q Consensus        97 ~VR~Ac~  103 (594)
                      .||.+|.
T Consensus        83 ~Vr~~a~   89 (97)
T PF12755_consen   83 NVRSAAE   89 (97)
T ss_pred             hHHHHHH
Confidence            9999985

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.45  E-value=0.0049  Score=64.32  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=106.4

Q ss_pred             HHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCC------------hhH
Q 007670           31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKN------------SAL   98 (594)
Q Consensus        31 ~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~D------------s~V   98 (594)
                      .+..-=++..+++++.++..   +++..+|..|.++||-+-....+        .-++.-++|..            ..|
T Consensus        97 aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a~--------~~l~~~l~~~~~~~a~~~~~~~~~~~  165 (335)
T COG1413          97 ALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERAL--------DPLLEALQDEDSGSAAAALDAALLDV  165 (335)
T ss_pred             HHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhhh--------HHHHHHhccchhhhhhhhccchHHHH
Confidence            33333345558888777765   56778888888888877555432        22222333322            357


Q ss_pred             HHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhh
Q 007670           99 QATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKA  178 (594)
Q Consensus        99 R~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fka  178 (594)
                      |.++..+++.+.+.-       ...+|.+.+ .+.++.++..|+.+|..+....        ..+.+.+.+.+..++..+
T Consensus       166 r~~a~~~l~~~~~~~-------~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         166 RAAAAEALGELGDPE-------AIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHHHHcCChh-------hhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHH
Confidence            777777777777666       677777777 5677789999999998887754        566778999999998888


Q ss_pred             HHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 007670          179 KAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALW  227 (594)
Q Consensus       179 K~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg  227 (594)
                      +...+.++|-         ......++.+..++.+++|.+|..+..+++
T Consensus       230 r~~~~~~l~~---------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         230 RKAALLALGE---------IGDEEAVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHhcc---------cCcchhHHHHHHHHhccchHHHHHHHHHhc
Confidence            7776666652         112344566666666666666665555554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.44  E-value=0.013  Score=62.06  Aligned_cols=209  Identities=15%  Similarity=0.143  Sum_probs=137.5

Q ss_pred             HHHHHHHHHhhcCCChh--HHHHHHHHHHHHH-hhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh---
Q 007670            4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIA-ATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---   73 (594)
Q Consensus         4 ~Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA-~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~---   73 (594)
                      .+-.++..++..|.|+-  |+..|++.|-.+- .++-++.    ...++.++.-.+...++..+..+.++++++|=.   
T Consensus        40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence            45556788888887765  6677777777644 4444333    556677777766666665666677778887443   


Q ss_pred             -hccccchHHHHHHHHhhhcCCCh--hHHHHHHHHHHhhchhhhcchhHH-----hHHHHHHHHc--cC---------CC
Q 007670           74 -HNLSPYITKIINSITRNFRDKNS--ALQATCISTVSSLSPRVGASAFVT-----MLKLLSDALF--TE---------QD  134 (594)
Q Consensus        74 -h~isphLpkIL~~IvrrLkD~Ds--~VR~Ac~~ALG~LAe~l~~~~~~~-----~lkPL~eaL~--~e---------q~  134 (594)
                       .-..-....+.|++.+-++|...  .+|.+|+.|||.++-.....+...     .+.-+|....  ++         .+
T Consensus       120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence             23344567888888999999764  479999999999988776544222     2332332221  11         13


Q ss_pred             hhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC----cC-CchHHHHHHHH
Q 007670          135 TNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV----DG-SGLKGLVSCLL  208 (594)
Q Consensus       135 k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~----~~-pyf~~lm~~L~  208 (594)
                      +.+..+|..|-.-++-.+++. +..++...+++|..+|.+++..++.++=.+|+-+.-.+..    |. +..+.++..|.
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~  279 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR  279 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence            456667777666666555542 3456788999999999999999999998899887754432    32 45555555555


Q ss_pred             hhhc
Q 007670          209 GFLS  212 (594)
Q Consensus       209 e~L~  212 (594)
                      +..+
T Consensus       280 ~La~  283 (309)
T PF05004_consen  280 ELAT  283 (309)
T ss_pred             HHHH
Confidence            5433

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.39  E-value=0.0097  Score=62.95  Aligned_cols=178  Identities=17%  Similarity=0.202  Sum_probs=117.2

Q ss_pred             CCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh--cch---hHHhHHHHH
Q 007670           56 KPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG--ASA---FVTMLKLLS  126 (594)
Q Consensus        56 kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~--~~~---~~~~lkPL~  126 (594)
                      +...|.+++..|-.+...|    ++..+...|+..+.+.|+=..+.=+..++.+++.|+=.+.  ...   +..+.++|.
T Consensus        56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~  135 (309)
T PF05004_consen   56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLK  135 (309)
T ss_pred             CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Confidence            3678999999998887666    7777888899999999998887667778888999988874  221   112455555


Q ss_pred             HHHccCCChhHHH--HH--HHHHHHHHhhcCCCcchhHHHHHHHHHHHh--cCC----------chhhHHHHHHHHHHHH
Q 007670          127 DALFTEQDTNAQV--GA--ALCLAATIDAAQDPDAGKLGRMEVRLERLL--KSE----------VFKAKAAGLVVVGSVI  190 (594)
Q Consensus       127 eaL~~eq~k~vQ~--~A--a~ALaavvE~l~~~i~~yL~~L~~RL~klL--~s~----------~fkaK~alL~aIGSiA  190 (594)
                      ..+ .+....++.  ++  |+++..|+-+.+.....-+-..|+-++...  +..          +..+..++|.+-|-++
T Consensus       136 ~~l-~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLl  214 (309)
T PF05004_consen  136 RIL-TDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLL  214 (309)
T ss_pred             HHH-hCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHH
Confidence            555 333333332  22  555556664433322222334555333322  221          2346677777777777


Q ss_pred             hcCcC--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670          191 GSGAV--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       191 ~a~~~--~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      .--..  +..+....++.|.+.|.++|-.+|.+|-++|+-|-....
T Consensus       215 t~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  215 TTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            43322  235567789999999999999999999999998877643

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.38  E-value=0.0002  Score=50.42  Aligned_cols=31  Identities=3%  Similarity=0.228  Sum_probs=28.2

Q ss_pred             HHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670           83 IINSITRNFRDKNSALQATCISTVSSLSPRV  113 (594)
Q Consensus        83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      |+|.+.+.++||++.||.|++.++|.|++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~   31 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC   31 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence            6899999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>TIGR02270 conserved hypothetical protein

Probab=97.35  E-value=0.0044  Score=68.06  Aligned_cols=162  Identities=20%  Similarity=0.130  Sum_probs=106.6

Q ss_pred             HHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHh
Q 007670           29 LDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSS  108 (594)
Q Consensus        29 LD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~  108 (594)
                      ||.|..-= +..++.++..|.+   .+.+.++.+++.++.-...        +..+..+++.|.|++..||.++..+||.
T Consensus        45 LdgL~~~G-~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~  112 (410)
T TIGR02270        45 VDGLVLAG-KAATELLVSALAE---ADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGW  112 (410)
T ss_pred             HHHHHHhh-HhHHHHHHHHHhh---CCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence            55555433 3347777777754   2445666666555542211        1137888889999999999999999997


Q ss_pred             hchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 007670          109 LSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGS  188 (594)
Q Consensus       109 LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGS  188 (594)
                      +-..-       ....|...| .+.++.++.++..++.....   +        -.+.+.++|+++++.++..++.++|.
T Consensus       113 i~~~~-------a~~~L~~~L-~~~~p~vR~aal~al~~r~~---~--------~~~~L~~~L~d~d~~Vra~A~raLG~  173 (410)
T TIGR02270       113 LGGRQ-------AEPWLEPLL-AASEPPGRAIGLAALGAHRH---D--------PGPALEAALTHEDALVRAAALRALGE  173 (410)
T ss_pred             CCchH-------HHHHHHHHh-cCCChHHHHHHHHHHHhhcc---C--------hHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence            55444       555566666 67788888766655554211   1        12357777888888888888888886


Q ss_pred             HHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          189 VIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       189 iA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      +-..         ..++.|...+.+.+-.+|.+|+.+|+.+.
T Consensus       174 l~~~---------~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       174 LPRR---------LSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             hccc---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence            4321         23445666788888888888888887664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>TIGR02270 conserved hypothetical protein

Probab=97.30  E-value=0.0082  Score=65.98  Aligned_cols=187  Identities=16%  Similarity=0.103  Sum_probs=99.8

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      +..++.++.    +.++.+|.+++.+||.+        ..+...+.++..|+|+++.||.+++.++|..-..        
T Consensus        88 ~~~L~~~L~----d~~~~vr~aaa~ALg~i--------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~--------  147 (410)
T TIGR02270        88 LRSVLAVLQ----AGPEGLCAGIQAALGWL--------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD--------  147 (410)
T ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHhcC--------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC--------
Confidence            444444443    34556777777777753        3344555566666666666666666666652211        


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH---------h
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI---------G  191 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA---------~  191 (594)
                      -.++|..+| .+.++.|...|+.||..+-..          ..++.|..++.+.+..++.+++.+++-+-         .
T Consensus       148 ~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~  216 (410)
T TIGR02270       148 PGPALEAAL-THEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRR  216 (410)
T ss_pred             hHHHHHHHh-cCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence            123444444 455666666666665544321          11222334455555555555444332210         0


Q ss_pred             cCcCcCC-------------chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-HH
Q 007670          192 SGAVDGS-------------GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-MI  257 (594)
Q Consensus       192 a~~~~~p-------------yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-~i  257 (594)
                      .....++             --+..++.|.+.+.+++  +|-.++.+||.+...   .   ....++..++.-++-. +-
T Consensus       217 ~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---~---av~~L~~~l~d~~~aR~A~  288 (410)
T TIGR02270       217 FQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGDV---E---AAPWCLEAMREPPWARLAG  288 (410)
T ss_pred             HHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---c---hHHHHHHHhcCcHHHHHHH
Confidence            0000000             11245566666666655  888888888877432   1   2455566666555555 88


Q ss_pred             HHHhhcCCC
Q 007670          258 EAWKQVPDL  266 (594)
Q Consensus       258 ~lWk~i~~v  266 (594)
                      +.++.|.|.
T Consensus       289 eA~~~ItG~  297 (410)
T TIGR02270       289 EAFSLITGM  297 (410)
T ss_pred             HHHHHhhCC
Confidence            888888875

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PTZ00429 beta-adaptin; Provisional

Probab=97.28  E-value=0.014  Score=68.69  Aligned_cols=168  Identities=14%  Similarity=0.122  Sum_probs=113.5

Q ss_pred             hhcCCChh--HHHHHHHHHHH-HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccc-hHHHHHHHH
Q 007670           13 LNKLSDRD--TYSQAAKELDS-IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY-ITKIINSIT   88 (594)
Q Consensus        13 L~KLsDrD--T~r~A~~eLD~-LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isph-LpkIL~~Iv   88 (594)
                      -++|..+|  ..+-|++-+-. |+..   ..+..++.-+....++.+...||=+++.+-..++.+   |- .--.++++.
T Consensus        38 r~~L~s~~~~~kk~alKkvIa~mt~G---~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~---pelalLaINtl~  111 (746)
T PTZ00429         38 QNDLNGTDSYRKKAAVKRIIANMTMG---RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ---PEKALLAVNTFL  111 (746)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCC---CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---hHHHHHHHHHHH
Confidence            34443434  44555544333 3333   234444444444566788899998888888776644   22 223478999


Q ss_pred             hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 007670           89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE  168 (594)
Q Consensus        89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~  168 (594)
                      +-++|+++.||.-|+.+|+.+-..-.   ...++.|+-..| .+.++.|-..||+|+.++....++.+.  -..+.++|.
T Consensus       112 KDl~d~Np~IRaLALRtLs~Ir~~~i---~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~~L~  185 (746)
T PTZ00429        112 QDTTNSSPVVRALAVRTMMCIRVSSV---LEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKKDLV  185 (746)
T ss_pred             HHcCCCCHHHHHHHHHHHHcCCcHHH---HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCccccc--ccchHHHHH
Confidence            99999999999999999998765431   112666777777 689999999999999999886554321  123556777


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhc
Q 007670          169 RLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       169 klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                      ++|..++..+...++.++-.|...
T Consensus       186 ~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        186 ELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHHh
Confidence            889888888888887777776543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.26  E-value=0.0048  Score=68.14  Aligned_cols=190  Identities=15%  Similarity=0.149  Sum_probs=133.9

Q ss_pred             HHHHhhcCCCh---hHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC-CCCcchHHHHHHHHHHHhhh--cccc
Q 007670            9 VNGLLNKLSDR---DTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS-DKPGVRKECIHVIATLSNSH--NLSP   78 (594)
Q Consensus         9 vl~~L~KLsDr---DT~r~A~~eLD~LA~~Lpp---e~-lp~fLs~L~e~~ss-~kp~~RKaaI~lLGvlae~h--~isp   78 (594)
                      |.+-|.++++.   |-++.|+.+|-.|...=.-   ++ |.-+|..+.|.... .+...|+.|++.|+-+|..-  .+-.
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            45566777655   4888999998887663110   33 77788888887665 67889999999999998877  5556


Q ss_pred             chHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-c
Q 007670           79 YITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-D  156 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-i  156 (594)
                      +-+--+--+...-+|++. ++|.|.-+++..++.+....+.. .+.|++-   ++.+|. -..+.-++.+++|.+..+ .
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~-~i~~~Il---t~D~~~-~~~~iKm~Tkl~e~l~~EeL  442 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-NISPLIL---TADEPR-AVAVIKMLTKLFERLSAEEL  442 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH-HHhhHHh---cCcchH-HHHHHHHHHHHHhhcCHHHH
Confidence            666666666677788776 67888888888889888544433 3333332   233332 223344899999998755 4


Q ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHH-HHHHHHhcC-cCcCCchHHH
Q 007670          157 AGKLGRMEVRLERLLKSEVFKAKAAGLV-VVGSVIGSG-AVDGSGLKGL  203 (594)
Q Consensus       157 ~~yL~~L~~RL~klL~s~~fkaK~alL~-aIGSiA~a~-~~~~pyf~~l  203 (594)
                      ...++.++|.+++..++.+--++.+++- +|.=+..+| +++.||+.++
T Consensus       443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L  491 (516)
T KOG2956|consen  443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL  491 (516)
T ss_pred             HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence            6789999999999999997776555444 444455777 5677998875

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.23  E-value=0.00092  Score=71.38  Aligned_cols=188  Identities=18%  Similarity=0.214  Sum_probs=130.5

Q ss_pred             CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHH------hhh-ccccchHHHHHHHHhhhcCCC-hhHHHHHHHHHHh
Q 007670           37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLS------NSH-NLSPYITKIINSITRNFRDKN-SALQATCISTVSS  108 (594)
Q Consensus        37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvla------e~h-~isphLpkIL~~IvrrLkD~D-s~VR~Ac~~ALG~  108 (594)
                      +...+|.|++.|.+.    .-.+|..++-+||.+|      +.| +-.--|+.+|..+...  -++ +.||.| -|+|..
T Consensus       155 d~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss--~~~ismlRn~-TWtLSN  227 (526)
T COG5064         155 DAGAVPLFIQLLSST----EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS--AIHISMLRNA-TWTLSN  227 (526)
T ss_pred             eCCchHHHHHHHcCc----hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc--cchHHHHHHh-HHHHHH
Confidence            455589999998853    3469999999999993      333 4445588888877632  243 345655 578888


Q ss_pred             hchhhhcch---hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHHHHhcCCchhhHHHHHH
Q 007670          109 LSPRVGASA---FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLV  184 (594)
Q Consensus       109 LAe~l~~~~---~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~klL~s~~fkaK~alL~  184 (594)
                      |+.----+|   ..+...|++.-|+-.-|+.+-.-||-|+--+.++..+.+-..+.. +++||+++|.|++.++...+|-
T Consensus       228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR  307 (526)
T COG5064         228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR  307 (526)
T ss_pred             hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence            876542223   223555666666566788899999999999999876666555544 7889999999999999888888


Q ss_pred             HHHHHHhcCcCcCCc--hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          185 VVGSVIGSGAVDGSG--LKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       185 aIGSiA~a~~~~~py--f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .||-|+.....-.+.  --..++.+...|.+.--.+||.||=+++-|..
T Consensus       308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA  356 (526)
T COG5064         308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA  356 (526)
T ss_pred             hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence            888776443321111  11235556666887766999999999887754

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.0073  Score=73.90  Aligned_cols=193  Identities=17%  Similarity=0.136  Sum_probs=137.6

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhc---hhhh
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS---PRVG  114 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA---e~l~  114 (594)
                      +..++.-|.....+-.|.+|.++-++|..|-.|+   -+..+||+||-.+.|-.-|---+||.|+=.+...|+   -.++
T Consensus      1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            5556666667788889999999999999999999   888999999999999999999999999755544444   4443


Q ss_pred             cc-------------------------------------------------hhHHhHHHHHHHHccCCChhHHH-HHH--
Q 007670          115 AS-------------------------------------------------AFVTMLKLLSDALFTEQDTNAQV-GAA--  142 (594)
Q Consensus       115 ~~-------------------------------------------------~~~~~lkPL~eaL~~eq~k~vQ~-~Aa--  142 (594)
                      +.                                                 |...=|-|++-.++++.++.|-- -|+  
T Consensus      1117 d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred             ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence            20                                                 00011223333333444443321 111  


Q ss_pred             -----HHHHHH--------------HhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH-hcCcCcCCchH
Q 007670          143 -----LCLAAT--------------IDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI-GSGAVDGSGLK  201 (594)
Q Consensus       143 -----~ALaav--------------vE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA-~a~~~~~pyf~  201 (594)
                           -||+..              -..+.+.+...|.+|.||+.++++.. +...|.++.+.|..++ +.+.+..||-.
T Consensus      1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg 1276 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG 1276 (1702)
T ss_pred             hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh
Confidence                 112211              01112333456899999999999988 7778999999999988 67778889999


Q ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       202 ~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      .+|..+..-+.+-.-.+||+-+-|+|.++...
T Consensus      1277 Kll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1277 KLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence            99999988888888888888888888888643

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.19  E-value=0.0093  Score=57.75  Aligned_cols=145  Identities=14%  Similarity=0.156  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHH
Q 007670           25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS  104 (594)
Q Consensus        25 A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~  104 (594)
                      |+-.|--|+...| .-+-++++.|...+.+++|.+|+.|+++|.-|....++ +.=+.++..+.+.|.|+|+.||++|..
T Consensus         8 ~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~D~~~~Ir~~A~~   85 (178)
T PF12717_consen    8 AIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLVDENPEIRSLARS   85 (178)
T ss_pred             HHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHcCCCHHHHHHHHH
Confidence            3444444455444 34666777777777788999999999999998766633 222445666667789999999999999


Q ss_pred             HHHhhchhhhcchhHHhHHHHHHHHccCC-Ch----hHHHHHHHHHHHHHhhcC-CCc-chhHHHHHHHHHHHh
Q 007670          105 TVSSLSPRVGASAFVTMLKLLSDALFTEQ-DT----NAQVGAALCLAATIDAAQ-DPD-AGKLGRMEVRLERLL  171 (594)
Q Consensus       105 ALG~LAe~l~~~~~~~~lkPL~eaL~~eq-~k----~vQ~~Aa~ALaavvE~l~-~~i-~~yL~~L~~RL~klL  171 (594)
                      .+..++.......+...+..++..|.+.. .+    .....=-.-+.-+++.+. +.. ...+.+||.|+....
T Consensus        86 ~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~  159 (178)
T PF12717_consen   86 FFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV  159 (178)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence            99999888633445557888888884321 11    111112233455566665 333 345666777766655

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.019  Score=69.09  Aligned_cols=237  Identities=11%  Similarity=0.165  Sum_probs=171.6

Q ss_pred             ChhHHHHHHHHHHHHHhh-----cCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhh
Q 007670           18 DRDTYSQAAKELDSIAAT-----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRN   90 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~-----Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Ivrr   90 (594)
                      +.-+++=|.+.|+.+...     +..+.+--+.+.|.+.+++...+.|+..+.+|-.|.+.|  -..-.+++.||-++=.
T Consensus       667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~  746 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS  746 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            334788899999998877     333337778888888899999999999999999999988  5556788999987777


Q ss_pred             hcCCChhHHH---HHHHHHHhhchhhhc--ch-h-H--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhH
Q 007670           91 FRDKNSALQA---TCISTVSSLSPRVGA--SA-F-V--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKL  160 (594)
Q Consensus        91 LkD~Ds~VR~---Ac~~ALG~LAe~l~~--~~-~-~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL  160 (594)
                      ++|-+..-|+   +|+.-+|.+...+.+  ++ . .  -|+.-|.+.|.|+.-..+- +-..|+..++..-...+ .+++
T Consensus       747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~a-s~Ivai~~il~e~~~~ld~~~l  825 (1176)
T KOG1248|consen  747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVA-SDIVAITHILQEFKNILDDETL  825 (1176)
T ss_pred             cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHH-HHHHHHHHHHHHHhccccHHHH
Confidence            7998876555   555666643333332  23 2 2  1777777777654322222 22556666655544333 5799


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-Ccc
Q 007670          161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV  237 (594)
Q Consensus       161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f  237 (594)
                      ++|+.-+.-.|.+.+.++..++++.|...+..=.+.  .+|.+.+|+.+...+.+----.|+.+--.|-.+..-.| +.+
T Consensus       826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL  905 (1176)
T KOG1248|consen  826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL  905 (1176)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence            999999999999999888888888887766654443  49999999999996666678889999999999998877 555


Q ss_pred             chhh-hHHHHHHHhcchhH
Q 007670          238 PEFK-GKCLKIFESKRFDK  255 (594)
Q Consensus       238 ~py~-~~~m~sLEs~RfDK  255 (594)
                      .+|. +.-++.|.+-|=-+
T Consensus       906 e~~~pee~~klL~nIRK~r  924 (1176)
T KOG1248|consen  906 ESFLPEEDMKLLTNIRKRR  924 (1176)
T ss_pred             HhhCHHHHHHHHHHHHHHH
Confidence            5554 55557888665544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.11  E-value=0.015  Score=64.29  Aligned_cols=205  Identities=12%  Similarity=0.086  Sum_probs=137.6

Q ss_pred             HHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHH-HHHHHHhhh--ccccchHHHHHHHHhhhcC-CChhHHHHHHH
Q 007670           32 IAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIH-VIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCIS  104 (594)
Q Consensus        32 LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~-lLGvlae~h--~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~  104 (594)
                      ...++.|+.   .+-..+.|.+...+.+...||+|+. +++++|++-  .--.|..+||-.++.-|.| -+...+.-|+.
T Consensus       273 ~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLr  352 (516)
T KOG2956|consen  273 SMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALR  352 (516)
T ss_pred             chhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence            444454444   5556666677777778999999999 889999987  5556899999999999999 66778888887


Q ss_pred             HHHhhchhhhc----chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHH
Q 007670          105 TVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA  180 (594)
Q Consensus       105 ALG~LAe~l~~----~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~  180 (594)
                      .|+-++..-..    ..+.+++|-|-.+-  +..+.+-..|+-|+-+++-...  +..-+-.+++.|+.    .+.+.-.
T Consensus       353 vL~~ml~~Q~~~l~DstE~ai~K~Leaa~--ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt----~D~~~~~  424 (516)
T KOG2956|consen  353 VLREMLTNQPARLFDSTEIAICKVLEAAK--DSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILT----ADEPRAV  424 (516)
T ss_pred             HHHHHHHhchHhhhchHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhc----CcchHHH
Confidence            77776655432    12344777666664  3444455555555444443211  11222333343333    4444434


Q ss_pred             HHHHHHHHHHh-cCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHH
Q 007670          181 AGLVVVGSVIG-SGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKC  244 (594)
Q Consensus       181 alL~aIGSiA~-a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~  244 (594)
                      ++|-.+--++. ...+ ..+.++.++|++.+.-.+..-.+||.|.=||-+|...+| +.+.||...+
T Consensus       425 ~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L  491 (516)
T KOG2956|consen  425 AVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL  491 (516)
T ss_pred             HHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence            44444444442 2233 347788999999999999999999999999999999999 8999996543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.0041  Score=67.03  Aligned_cols=219  Identities=16%  Similarity=0.163  Sum_probs=138.3

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHhh------c---CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccc
Q 007670            8 SVNGLLNKLSDRDTYSQAAKELDSIAAT------V---DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS   77 (594)
Q Consensus         8 rvl~~L~KLsDrDT~r~A~~eLD~LA~~------L---ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~is   77 (594)
                      .++-.|.|-+|-|.+..+...|-.||-.      |   .|.-+|.+++.+-    +..+-++-.+-++|+.++..- +..
T Consensus       211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd----~~s~kvkcqA~lALrnlasdt~Yq~  286 (550)
T KOG4224|consen  211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD----DGSDKVKCQAGLALRNLASDTEYQR  286 (550)
T ss_pred             hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh----CCChHHHHHHHHHHhhhcccchhhh
Confidence            4667788889999776666666555432      2   2333666555544    355568888889999997766 444


Q ss_pred             cchH-HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670           78 PYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ  153 (594)
Q Consensus        78 phLp-kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~  153 (594)
                      |-.+ -=+|.+++.|+||--..--|.+..+..++-+=.....+   .|++||...|--..+..+|..|..-|-.+--...
T Consensus       287 eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse  366 (550)
T KOG4224|consen  287 EIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE  366 (550)
T ss_pred             HHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh
Confidence            4322 23678889998887766656665565555554433322   2999999999533455577666555444332211


Q ss_pred             CCcchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch-H-HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          154 DPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL-K-GLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       154 ~~i~~yL~~-L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf-~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      .....+... -+|++..++-..+..++.-.-+||+-++-... +..|| + .++|.|++.+.++.-++|.-|+.+|+-+.
T Consensus       367 ~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls  445 (550)
T KOG4224|consen  367 HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS  445 (550)
T ss_pred             hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence            111112111 45566667766666666667777776664432 22222 2 36899999999999999999999999876


Q ss_pred             H
Q 007670          231 V  231 (594)
Q Consensus       231 ~  231 (594)
                      .
T Consensus       446 s  446 (550)
T KOG4224|consen  446 S  446 (550)
T ss_pred             h
Confidence            5

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.02  E-value=0.0038  Score=74.86  Aligned_cols=160  Identities=16%  Similarity=0.108  Sum_probs=125.8

Q ss_pred             CCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc
Q 007670           52 NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT  131 (594)
Q Consensus        52 ~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~  131 (594)
                      ...++|.+|++=+-.|+-||-.+--..-=.-||++++.-|.|-|..+|-|-.+.+.-+|-++.......++.||+.-=+.
T Consensus       587 lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt  666 (1431)
T KOG1240|consen  587 LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT  666 (1431)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence            55677899999999988888877333344568999999999999999999999999888888544444577777665558


Q ss_pred             CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007670          132 EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL  211 (594)
Q Consensus       132 eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L  211 (594)
                      +++..|-..|.+||..+|+.- ---.+++-+++..+.-+|-+|+-=++.++++.|.+++..-.+..-|- .+||.|.+||
T Consensus       667 D~EE~Viv~aL~~ls~Lik~~-ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc-~l~P~irpfl  744 (1431)
T KOG1240|consen  667 DGEEAVIVSALGSLSILIKLG-LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYC-KLMPLIRPFL  744 (1431)
T ss_pred             CcchhhHHHHHHHHHHHHHhc-ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheE-EeehhhHHhh
Confidence            999999999999999999962 22246888899999999999999999999999999886544433332 4567777776


Q ss_pred             cC
Q 007670          212 SS  213 (594)
Q Consensus       212 ~s  213 (594)
                      ..
T Consensus       745 ~~  746 (1431)
T KOG1240|consen  745 ER  746 (1431)
T ss_pred             hc
Confidence            64

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=96.96  E-value=0.0084  Score=61.94  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=113.9

Q ss_pred             cCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchH--HHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670           36 VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT--KIINSITRNFRDKNSALQATCISTVSSLSPRV  113 (594)
Q Consensus        36 Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLp--kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      |.++.|..|+.+|..   +.+|..++.++.++|..+..-+-...+.  -.++.|...|.+|++.||.-++.|+..||...
T Consensus         9 l~~~~l~~Ll~lL~~---t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    9 LEAQELQKLLCLLES---TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             cCHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence            677778888888764   4789999999999999754322222222  35788999999999999999999999999887


Q ss_pred             hcchhH-HhHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670          114 GASAFV-TMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI  190 (594)
Q Consensus       114 ~~~~~~-~~lkPL~eaL~~e-q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA  190 (594)
                      ..+..+ .++..+.+.+... -+..+|.++..+|..+.  ..+.....+...++.|+.+|.+.+-++|..+|-++.-++
T Consensus        86 en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   86 ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            544433 3777777766543 48889998888888773  333334567777888999999999999999888887766

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.0091  Score=63.17  Aligned_cols=172  Identities=21%  Similarity=0.164  Sum_probs=114.9

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF  118 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~  118 (594)
                      -..-|.....-+++.+|...=.++..+-.|++.|  .+.+.|.+++.+|++-++.+-|.|-+|+|-|++.+...+-+...
T Consensus        86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555577889999999999999999999  99999999999999999999999999999999999999943322


Q ss_pred             HHhHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHH--h
Q 007670          119 VTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVI--G  191 (594)
Q Consensus       119 ~~~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~--~fkaK~alL~aIGSiA--~  191 (594)
                      . -+..|+-.|++   +.+.=+-..|=-||-++|.....  ...|+.|.+.    +.+.  ...+|.++. ....+.  +
T Consensus       166 ~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--~~~L~~L~~~----~~~~n~r~r~~a~~~-~~~~v~rl~  237 (334)
T KOG2933|consen  166 Q-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--QKLLRKLIPI----LQHSNPRVRAKAALC-FSRCVIRLG  237 (334)
T ss_pred             H-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--HHHHHHHHHH----Hhhhchhhhhhhhcc-ccccceecc
Confidence            2 67777777762   23455566777778888876443  2344444444    4433  333333321 111111  1


Q ss_pred             cCcCcCCchHHHHHHHHhhhcCCcHHHHH
Q 007670          192 SGAVDGSGLKGLVSCLLGFLSSQDWAARK  220 (594)
Q Consensus       192 a~~~~~pyf~~lm~~L~e~L~seDw~lRK  220 (594)
                      +.+.-.+|...+++.+++-+.+.--.+|+
T Consensus       238 v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~  266 (334)
T KOG2933|consen  238 VLPVLLQGSCDLSRAAQEQGSDKLPELRE  266 (334)
T ss_pred             ccchhhHhHHHHHHHHHhhhccccccccc
Confidence            22223366667777777776665444443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.80  E-value=0.017  Score=65.65  Aligned_cols=195  Identities=16%  Similarity=0.091  Sum_probs=136.1

Q ss_pred             HHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 007670           30 DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVS  107 (594)
Q Consensus        30 D~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG  107 (594)
                      -..|.+|--+++.+||..++-..  --|..|.-||+..-.+|+.-  .+-+||..++.+|-+.|+|-..-||=.++.||.
T Consensus       306 ~vva~algv~~llpfl~a~c~Sr--kSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS  383 (975)
T COG5181         306 GVVADALGVEELLPFLEALCGSR--KSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALS  383 (975)
T ss_pred             HHHHHhhCcHHHHHHHHHHhcCc--cchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHH
Confidence            34566776667888888887543  24779999999999998876  777999999999999999999999999999999


Q ss_pred             hhchhhhc---chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc----chhH----HHHHHHHHHHhcCCch
Q 007670          108 SLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD----AGKL----GRMEVRLERLLKSEVF  176 (594)
Q Consensus       108 ~LAe~l~~---~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i----~~yL----~~L~~RL~klL~s~~f  176 (594)
                      .+|+...-   +.|..+|.||-+....+-.+        -|.+|+.+++..+    .+|+    ...|.-++..|++|.-
T Consensus       384 ~lae~~~Pygie~fd~vl~pLw~g~~~hrgk--------~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spde  455 (975)
T COG5181         384 YLAELVGPYGIEQFDEVLCPLWEGASQHRGK--------ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDE  455 (975)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHhcCCc--------hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchh
Confidence            99998832   12455899999887532233        2444444443222    2343    5688889999999988


Q ss_pred             hhHHHHHHHHHHHHhcCcCcC-CchH---------------------------------------HHHHHHHhhhcCCcH
Q 007670          177 KAKAAGLVVVGSVIGSGAVDG-SGLK---------------------------------------GLVSCLLGFLSSQDW  216 (594)
Q Consensus       177 kaK~alL~aIGSiA~a~~~~~-pyf~---------------------------------------~lm~~L~e~L~seDw  216 (594)
                      +-|.-++-...--+.+++... -|++                                       .++..+.+++.++.-
T Consensus       456 emkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~e  535 (975)
T COG5181         456 EMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPE  535 (975)
T ss_pred             hcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcc
Confidence            888777765554445543321 1111                                       223444555666667


Q ss_pred             HHHHHHHHHHHHHHHHcC
Q 007670          217 AARKAAAEALWRLAVVEK  234 (594)
Q Consensus       217 ~lRKaAaDaLg~IA~a~g  234 (594)
                      +-||.++.+..++-..+|
T Consensus       536 p~r~m~a~~vsri~~~lg  553 (975)
T COG5181         536 PYRKMNAGLVSRIFSRLG  553 (975)
T ss_pred             hhhhhhhHHHHHHHHhcc
Confidence            777777777776665444

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=96.66  E-value=0.07  Score=55.37  Aligned_cols=49  Identities=12%  Similarity=-0.032  Sum_probs=40.6

Q ss_pred             hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHH
Q 007670          200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIF  248 (594)
Q Consensus       200 f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sL  248 (594)
                      .+.++|.|.+.|.++.-.++.-++++|..-+...| +.+.||...+..+|
T Consensus       206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l  255 (262)
T PF14500_consen  206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL  255 (262)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            35689999999999988899999999998888877 68888877766555

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.62  E-value=0.059  Score=62.58  Aligned_cols=152  Identities=18%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             HHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHh
Q 007670           31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSS  108 (594)
Q Consensus        31 ~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~  108 (594)
                      ..|.+|-=..+.+||..++.+-  --|..|.-||+..--+|..-  .+-|||..++.+|-.+|.|-..-||-.++.||+.
T Consensus       502 vvasalgip~llpfLkavc~Sk--kSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsa  579 (1172)
T KOG0213|consen  502 VVASALGIPALLPFLKAVCGSK--KSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSA  579 (1172)
T ss_pred             HHHHHhCcHHHHHHHHHHhccc--cchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHH
Confidence            3455554445777777777532  23788999999999987654  8889999999999999999999999999999999


Q ss_pred             hchhhhc---chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-------chhH-HHHHHHHHHHhcCCchh
Q 007670          109 LSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-------AGKL-GRMEVRLERLLKSEVFK  177 (594)
Q Consensus       109 LAe~l~~---~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-------~~yL-~~L~~RL~klL~s~~fk  177 (594)
                      ||+...-   +.|.++|+||-+.+-.+-.+.        |++|+-+.++-+       ..|+ ..+|-.+.+-+.+|+-.
T Consensus       580 laeaa~Pygie~fDsVlkpLwkgir~hrgk~--------laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDee  651 (1172)
T KOG0213|consen  580 LAEAATPYGIEQFDSVLKPLWKGIRQHRGKE--------LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEE  651 (1172)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHccChH--------HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHH
Confidence            9998842   235679999999985333332        333433332221       2343 45888899999999977


Q ss_pred             hHHHHHHHHHHHHhc
Q 007670          178 AKAAGLVVVGSVIGS  192 (594)
Q Consensus       178 aK~alL~aIGSiA~a  192 (594)
                      -|..+|-++--....
T Consensus       652 mkkivLKVv~qcc~t  666 (1172)
T KOG0213|consen  652 MKKIVLKVVKQCCAT  666 (1172)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            777777666654433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.56  E-value=0.079  Score=55.35  Aligned_cols=123  Identities=17%  Similarity=0.266  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhhcCCCC-hHHHHH-hhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHH
Q 007670           24 QAAKELDSIAATVDPTL-LPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQ   99 (594)
Q Consensus        24 ~A~~eLD~LA~~Lppe~-lp~fLs-~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR   99 (594)
                      ++...|+.....+.+.. +..++. .|.+...+.++.+|+.|+++||.+|=..  ....|++-++..+.+   | +..|+
T Consensus         6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~   81 (298)
T PF12719_consen    6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK   81 (298)
T ss_pred             HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence            45566677666776665 666664 4579999999999999999999998777  666777777776633   4 88899


Q ss_pred             HHHHHHHHhhchhhhcc-----hh-------HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670          100 ATCISTVSSLSPRVGAS-----AF-------VTMLKLLSDALFTEQDTNAQVGAALCLAATIDA  151 (594)
Q Consensus       100 ~Ac~~ALG~LAe~l~~~-----~~-------~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~  151 (594)
                      -.|+.++.-+.-...-.     ..       ..+++-+...|. ..++.+|..|+-++++++=+
T Consensus        82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~a~EGl~KLlL~  144 (298)
T PF12719_consen   82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLD-SENPELQAIAVEGLCKLLLS  144 (298)
T ss_pred             HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhc
Confidence            99998888777665321     11       137777777874 44888999999999998765

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.15  Score=61.23  Aligned_cols=214  Identities=19%  Similarity=0.194  Sum_probs=126.4

Q ss_pred             HHHHHhhcCCChhH--HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc-ch
Q 007670            8 SVNGLLNKLSDRDT--YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-YI   80 (594)
Q Consensus         8 rvl~~L~KLsDrDT--~r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp-hL   80 (594)
                      -+...|.-|+|.||  .-.|++-+-.++..||++-    |...++++.+..   .+..=-.++++||.||..-.+-| -+
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e---~~~aWHgacLaLAELA~rGlLlps~l  418 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE---DDSAWHGACLALAELALRGLLLPSLL  418 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC---chhHHHHHHHHHHHHHhcCCcchHHH
Confidence            34556677788884  6799999999999999544    445555444332   22333388999999988774444 68


Q ss_pred             HHHHHHHHhhhcCCC--------hhHHHHHHHHHHhhchhhhcchhHHhHHHH-----HHHHccCCChhHHHHHHHHHHH
Q 007670           81 TKIINSITRNFRDKN--------SALQATCISTVSSLSPRVGASAFVTMLKLL-----SDALFTEQDTNAQVGAALCLAA  147 (594)
Q Consensus        81 pkIL~~IvrrLkD~D--------s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL-----~eaL~~eq~k~vQ~~Aa~ALaa  147 (594)
                      +.++|.|++.|.-.+        ..||+|+|..+=+|+.-+......-++.-|     ..|+| +.+-++-.+|+.||..
T Consensus       419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-DrevncRRAAsAAlqE  497 (1133)
T KOG1943|consen  419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-DREVNCRRAASAALQE  497 (1133)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-CchhhHhHHHHHHHHH
Confidence            999999999997654        569999999999998888322111133333     34444 5667777788887777


Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhh-hcCCcHHHHHHHHHHH
Q 007670          148 TIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGF-LSSQDWAARKAAAEAL  226 (594)
Q Consensus       148 vvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~-L~seDw~lRKaAaDaL  226 (594)
                      .|-.-+..+.+.         .++.+.+|-+-.-.-.+-.-+.-.-++|..|-..++..|.-- +..=|=.+|-.|+.+|
T Consensus       498 ~VGR~~n~p~Gi---------~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL  568 (1133)
T KOG1943|consen  498 NVGRQGNFPHGI---------SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL  568 (1133)
T ss_pred             HhccCCCCCCch---------hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence            766543332110         122222332211111112222222234455555444444322 3333445577777777


Q ss_pred             HHHHHHcC
Q 007670          227 WRLAVVEK  234 (594)
Q Consensus       227 g~IA~a~g  234 (594)
                      ..|+....
T Consensus       569 ~~Ls~~~p  576 (1133)
T KOG1943|consen  569 HKLSLTEP  576 (1133)
T ss_pred             HHHHHhhH
Confidence            77776543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.44  E-value=0.002  Score=50.28  Aligned_cols=53  Identities=26%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670          177 KAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL  229 (594)
Q Consensus       177 kaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I  229 (594)
                      .+|.+++-+||.++...+.. .+|++.+|+.|...|.+++-.+|.+|+.+||.|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46777888999876555443 599999999999999988889999999999865

...

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.40  E-value=0.13  Score=60.71  Aligned_cols=259  Identities=11%  Similarity=0.120  Sum_probs=167.8

Q ss_pred             hHHHHHHHHHhhcCC-ChhH--HHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHH-HHHHHHHHhhhccc
Q 007670            3 HALKTSVNGLLNKLS-DRDT--YSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKEC-IHVIATLSNSHNLS   77 (594)
Q Consensus         3 ~~Lk~rvl~~L~KLs-DrDT--~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaa-I~lLGvlae~h~is   77 (594)
                      ++.-..++..|..|. +.+|  ..-++..|-..+..+|.+. ...|...+.-.... ++...|-. =-+|+.+.-  .+.
T Consensus       154 ~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~--~~~  230 (759)
T KOG0211|consen  154 PEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYV--SLP  230 (759)
T ss_pred             hhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhcc--CCC
Confidence            556667777777774 6667  7888899999999998877 34544444332222 44332221 122222211  221


Q ss_pred             -cch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670           78 -PYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP  155 (594)
Q Consensus        78 -phL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~  155 (594)
                       +-+ .++.+...+.-+|-++.||.|.+.=+|.+|..+...-..+.+.|.+..|..+..-.|+..|.-++..+.+..+.+
T Consensus       231 ~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~  310 (759)
T KOG0211|consen  231 DDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD  310 (759)
T ss_pred             hHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence             122 345555556667888999999999999999999765555688899999987766779999999999999988776


Q ss_pred             cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007670          156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-  234 (594)
Q Consensus       156 i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-  234 (594)
                      . +....+++.++++.+..+-....++...--.+..+-+. ..+-....+....-+.++.|..|.+++--...++..+. 
T Consensus       311 ~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~  388 (759)
T KOG0211|consen  311 D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA  388 (759)
T ss_pred             h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence            5 66778999999999988877776655544444332222 22223445667777888999999999888888887765 


Q ss_pred             Cccchhhh-HHHHHHHhcchhHHHHHHhhcCCC
Q 007670          235 DAVPEFKG-KCLKIFESKRFDKMIEAWKQVPDL  266 (594)
Q Consensus       235 d~f~py~~-~~m~sLEs~RfDK~i~lWk~i~~v  266 (594)
                      +.+..... .++-....+=.|++...-+..+-+
T Consensus       389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~  421 (759)
T KOG0211|consen  389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASV  421 (759)
T ss_pred             ccccccchhhhhHHHHHHHhcccchHHHHHhcc
Confidence            23332222 222333344445544444443333

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.36  E-value=0.0062  Score=42.80  Aligned_cols=30  Identities=37%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          203 LVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       203 lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +||.+.+.+.+++|.+|.+|+.+|+.|+..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999863

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=96.27  E-value=0.079  Score=51.07  Aligned_cols=129  Identities=15%  Similarity=0.090  Sum_probs=94.8

Q ss_pred             ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhc
Q 007670           40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGA  115 (594)
Q Consensus        40 ~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~  115 (594)
                      .+..+...|....++..+..|-.++.+++++++.+   .+..|-...+..+++-|+.+|+ .+..+|+.+++.|.+.+.+
T Consensus        22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            38888888888888999999999999999998886   6656767777777777777776 6799999999999998875


Q ss_pred             chh----------HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670          116 SAF----------VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL  171 (594)
Q Consensus       116 ~~~----------~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL  171 (594)
                      .|.          ..|+.+++..+-   +......+.-+|.+++..-+....|+..++-.-+..+|
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~---~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll  164 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQ---DSSCPETALDALATLLPHHPTTFRPFANKIESALLSLL  164 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence            331          125555555541   14455567777777777666666666666555554443

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.14  E-value=0.028  Score=55.61  Aligned_cols=113  Identities=17%  Similarity=0.094  Sum_probs=83.1

Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhh-cCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC---cCc
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDA-AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG---AVD  196 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~-l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~---~~~  196 (594)
                      +|+-+++-|. |.+..-.--|..++..+++. .++.+.|.+|+|+..|-++|++.+..+..++|.++.-++..+   |++
T Consensus        39 ~Lpif~dGL~-Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a  117 (183)
T PF10274_consen   39 YLPIFFDGLR-ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA  117 (183)
T ss_pred             HHHHHHhhhh-ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            7888888884 44444445566667777777 778889999999999999999999999999999998885332   344


Q ss_pred             C-CchHHHHHHHHhhhcCC-------c----HHHHHHHHHHHHHHHHHcC
Q 007670          197 G-SGLKGLVSCLLGFLSSQ-------D----WAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       197 ~-pyf~~lm~~L~e~L~se-------D----w~lRKaAaDaLg~IA~a~g  234 (594)
                      + ||+.+++|.+.-|....       |    -.++-...|+|..+-..+|
T Consensus       118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG  167 (183)
T PF10274_consen  118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG  167 (183)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence            4 99999999999776533       2    2334445556666655555

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.12  E-value=0.16  Score=60.19  Aligned_cols=210  Identities=13%  Similarity=0.134  Sum_probs=156.5

Q ss_pred             CChhHHHHHHHHHHHHHhhc----CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---------------ccc
Q 007670           17 SDRDTYSQAAKELDSIAATV----DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---------------NLS   77 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~L----ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---------------~is   77 (594)
                      |..|-.-+|++.|--+...|    .|+..+.+...+ +.+++  |..-+.+..+|.++...+               +-.
T Consensus       786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~kll-d~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ  862 (1030)
T KOG1967|consen  786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLL-DLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ  862 (1030)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHH-HhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence            34444566666665544443    555544433322 22322  567778888888873332               223


Q ss_pred             cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670           78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ  153 (594)
Q Consensus        78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~  153 (594)
                      -+...|+|++++.+.-.+..++.--+.+|...-.+..++   | +..+++-|+++| +-.|..+|..+-.++.-++...+
T Consensus       863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhcc
Confidence            356779999999999777778888888888777777654   2 345888899999 77899999999999999999888


Q ss_pred             CCcchhHHHHHHHHHHHhcCCc---hhhHHHHHHHHHHHHhcCcC--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007670          154 DPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR  228 (594)
Q Consensus       154 ~~i~~yL~~L~~RL~klL~s~~---fkaK~alL~aIGSiA~a~~~--~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~  228 (594)
                      .-..+|+..+.|.++.+=.+++   --++..+|.+++++...-.-  ..||-+.++..|...|.+.-.-+||.|+++=+.
T Consensus       942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            8888999999999999887775   34788999999999864322  359999999999999999999999999998654


Q ss_pred             HH
Q 007670          229 LA  230 (594)
Q Consensus       229 IA  230 (594)
                      -.
T Consensus      1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred             hh
Confidence            43

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=96.05  E-value=0.31  Score=56.57  Aligned_cols=158  Identities=13%  Similarity=0.101  Sum_probs=101.3

Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH-HhHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCc
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPD  156 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~-~~lkPL~eaL~-~eq~k~vQ~~Aa~ALaavvE~l~~~i  156 (594)
                      .+++|+|.|.+.++|.|..++..|+..++.+++.+. .+++ ..+-|.+..|. .+.+..++..+..|++.+++.++.. 
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~-  463 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA-  463 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH-
Confidence            368899999999999999999999999999999994 3333 25555555553 5678889999999999999887642 


Q ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH--hcCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI--GSGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA--~a~~-~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                        ..-..+..+.++.+..+..++...+.++-.++  .-+| ++.  ...++|.|..+...+-..             -..
T Consensus       464 --~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~--~~~VlPlli~ls~~~~L~-------------~~Q  526 (700)
T KOG2137|consen  464 --AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM--AENVLPLLIPLSVAPSLN-------------GEQ  526 (700)
T ss_pred             --HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee--hhhhhhhhhhhhhccccc-------------HHH
Confidence              22223345667777777666655555554433  1122 222  345667775554433211             000


Q ss_pred             CCccchhhhHHHHHHHhcchhH
Q 007670          234 KDAVPEFKGKCLKIFESKRFDK  255 (594)
Q Consensus       234 gd~f~py~~~~m~sLEs~RfDK  255 (594)
                      -.........++.++|..|.+|
T Consensus       527 y~~~m~~i~~ml~~ie~~~~~k  548 (700)
T KOG2137|consen  527 YNKYMSEIRLMLSAIEKPRANK  548 (700)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHH
Confidence            0112223466667777777766

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=95.92  E-value=0.18  Score=59.50  Aligned_cols=193  Identities=13%  Similarity=0.129  Sum_probs=131.2

Q ss_pred             cCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHH--Hhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670           36 VDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP  111 (594)
Q Consensus        36 Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl--ae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe  111 (594)
                      +|-++ +..+++.+..-.+...+.+|-.-+.-+..+  +-.- -+..+-+..+|.|...-.|..-.||.|..+.+-+++.
T Consensus       429 ~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~  508 (759)
T KOG0211|consen  429 LPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL  508 (759)
T ss_pred             CCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence            34344 777777776666777888888888544333  1111 5666788889999999988878899999999999998


Q ss_pred             hhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670          112 RVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG  191 (594)
Q Consensus       112 ~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~  191 (594)
                      .+...-+...+.+|...-+.+..-.++.+|+++|.++++..+.  .-+-..+.++++....++++..+.+.+.+|..+|.
T Consensus       509 q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~  586 (759)
T KOG0211|consen  509 QLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE  586 (759)
T ss_pred             hhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence            8852222224444444433344566888999999999999882  23567899999999999999999999999999997


Q ss_pred             cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          192 SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       192 a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      +.|.- -+-..++|.+.+...+..=.+|--+|..|..+..
T Consensus       587 v~g~e-i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  587 VLGQE-ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK  625 (759)
T ss_pred             HhccH-HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence            75431 1122234444444444444555555555544443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.85  E-value=0.055  Score=52.10  Aligned_cols=145  Identities=12%  Similarity=0.170  Sum_probs=87.5

Q ss_pred             hHHHHHhhhhcCCCC-CCcchHHHHHHHHHHHhhhccccchHHHHHHHHhh--hcCCChhHHHHHHHHHHhhchhhhcch
Q 007670           41 LPTFLSCILSTNSSD-KPGVRKECIHVIATLSNSHNLSPYITKIINSITRN--FRDKNSALQATCISTVSSLSPRVGASA  117 (594)
Q Consensus        41 lp~fLs~L~e~~ss~-kp~~RKaaI~lLGvlae~h~isphLpkIL~~Ivrr--LkD~Ds~VR~Ac~~ALG~LAe~l~~~~  117 (594)
                      .|.||..|.....+. .+..|+|++++||.|-   ++.||--|.+.--...  -.+.+....+......+...  ..++-
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG---ALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ee~   82 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILG---ALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISP--SSEEY   82 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---ccCcHHHhcccccCCccccccccccchhhHHhhccCCC--chHHH
Confidence            566666665553333 4889999999999985   3566655522211111  12222333444333222210  00111


Q ss_pred             hHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670          118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI  190 (594)
Q Consensus       118 ~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA  190 (594)
                      ..+ .+.-|+..|-+..-......+..|+-.++..++....+||++++|.++..+.+..-..+..++.-++.++
T Consensus        83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            112 5566666553222344555888888888988888889999999999999998654477777777766655

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.79  E-value=0.47  Score=56.42  Aligned_cols=190  Identities=16%  Similarity=0.120  Sum_probs=136.1

Q ss_pred             hHHHHHhhhhc-CCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH
Q 007670           41 LPTFLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV  119 (594)
Q Consensus        41 lp~fLs~L~e~-~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~  119 (594)
                      +..||...... ..+.+++.|-.++++|.-.|.-|-+.|.+|+||-.|.....+...-|-.+-.+||...+..=++.+..
T Consensus       488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as  567 (1005)
T KOG2274|consen  488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS  567 (1005)
T ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh
Confidence            55555554333 45667899999999999989888888999999999999999999999999999999988877655433


Q ss_pred             --HhHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhh----HHHHHHHHHHHHh
Q 007670          120 --TMLKLLSDALFT--EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKA----KAAGLVVVGSVIG  191 (594)
Q Consensus       120 --~~lkPL~eaL~~--eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fka----K~alL~aIGSiA~  191 (594)
                        +.+-|++.++|-  ..+|.|-.-+=-|+..+++++.- -.+|-..++|-|+..|..+.-++    ...++..|..+..
T Consensus       568 ~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr  646 (1005)
T KOG2274|consen  568 MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR  646 (1005)
T ss_pred             hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence              378888888873  45787766777777777775421 13677889999999998886333    4446666666665


Q ss_pred             cCcCcC--CchHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHHH
Q 007670          192 SGAVDG--SGLKGLVSCLLGF-LSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       192 a~~~~~--pyf~~lm~~L~e~-L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .++--.  -....+.|.+..+ |+++|-++=-.|-|||.++-.
T Consensus       647 ~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  647 NTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             cCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            543321  1122233444333 677887777788888887665

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.65  E-value=0.052  Score=47.95  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             hhhhcCCCCCCcchHHHHHHHHHHHhhhc-cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHH
Q 007670           47 CILSTNSSDKPGVRKECIHVIATLSNSHN-LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLL  125 (594)
Q Consensus        47 ~L~e~~ss~kp~~RKaaI~lLGvlae~h~-isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL  125 (594)
                      .+.....++.+|+|-+|+..|.-+.+... ..-+++.|+......|+|+|+=|--+|..+++.||+...+.    +++-|
T Consensus         7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----vl~~L   82 (92)
T PF10363_consen    7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----VLPIL   82 (92)
T ss_pred             HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH----HHHHH
Confidence            33444567889999999999999999884 77789999999999999999999999999999999998432    44445


Q ss_pred             HHHH
Q 007670          126 SDAL  129 (594)
Q Consensus       126 ~eaL  129 (594)
                      ++..
T Consensus        83 ~~~y   86 (92)
T PF10363_consen   83 LDEY   86 (92)
T ss_pred             HHHH
Confidence            5444

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.36  E-value=0.59  Score=58.15  Aligned_cols=132  Identities=10%  Similarity=0.187  Sum_probs=95.7

Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCC
Q 007670           17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDK   94 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~   94 (594)
                      -|+|+.+.++..|   |.+-+=.+ |-++|..|.-....+.+..|--|+++|..+++.- .+- -.+.|...|.+|+.|+
T Consensus       792 ~d~~~a~li~~~l---a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL-~~~dvq~~Vh~R~~Ds  867 (1692)
T KOG1020|consen  792 ADDDDAKLIVFYL---AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL-SRPDVQEAVHGRLNDS  867 (1692)
T ss_pred             ccchhHHHHHHHH---HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh-cCHHHHHHHHHhhccc
Confidence            4556666655544   33334334 8889999988888999999999999999999988 332 3577888999999999


Q ss_pred             ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670           95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD  154 (594)
Q Consensus        95 Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~  154 (594)
                      ..+||+|+++=+|++.-...+ -...|..-+.+-+. +..-.|-..+.--|..++|.-++
T Consensus       868 sasVREAaldLvGrfvl~~~e-~~~qyY~~i~erIl-DtgvsVRKRvIKIlrdic~e~pd  925 (1692)
T KOG1020|consen  868 SASVREAALDLVGRFVLSIPE-LIFQYYDQIIERIL-DTGVSVRKRVIKILRDICEETPD  925 (1692)
T ss_pred             hhHHHHHHHHHHhhhhhccHH-HHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHhCCC
Confidence            999999999999987766521 11126666666663 44555666777777778776554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.32  E-value=0.69  Score=50.57  Aligned_cols=210  Identities=17%  Similarity=0.199  Sum_probs=129.9

Q ss_pred             hhcCCChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchH
Q 007670           13 LNKLSDRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYIT   81 (594)
Q Consensus        13 L~KLsDrDT~r~A~~eLD~LA~~L-------ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLp   81 (594)
                      |+|--|.-.++.|+..|-.|...-       ..-.+|++++.+.    +.++.+|..|-.+++.++-..    .++.-=|
T Consensus       175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~----s~d~dvqyycttaisnIaVd~~~Rk~Laqaep  250 (550)
T KOG4224|consen  175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK----SGDLDVQYYCTTAISNIAVDRRARKILAQAEP  250 (550)
T ss_pred             hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc----cCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence            444446668999999998887653       2333788777765    567789999999988884333    7777889


Q ss_pred             HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH--H-hHHHHHHHHccCCChhHHHHHHHHHHHH-HhhcCCC-c
Q 007670           82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV--T-MLKLLSDALFTEQDTNAQVGAALCLAAT-IDAAQDP-D  156 (594)
Q Consensus        82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~--~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaav-vE~l~~~-i  156 (594)
                      |++|.++....|+++.|.=-+--||+.||....-+-.+  + -++-+++.|...-.|-+- +...|+-.+ |--+.+. |
T Consensus       251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plil-asVaCIrnisihplNe~lI  329 (550)
T KOG4224|consen  251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLIL-ASVACIRNISIHPLNEVLI  329 (550)
T ss_pred             chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHH-HHHHHHhhcccccCcccce
Confidence            99999999999999999988889999999776322111  1 445555555222223222 333444222 1111222 2


Q ss_pred             c--hhHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhcCcCc-CCchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          157 A--GKLGRMEVRLERLLKSEV-FKAKAAGLVVVGSVIGSGAVD-GSGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       157 ~--~yL~~L~~RL~klL~s~~-fkaK~alL~aIGSiA~a~~~~-~pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .  ++|.    .|+.+|.... -.+|-++.+.+.-+|....-. ..+++ ..+|.|++.+-+....+|..-.-|++.+|.
T Consensus       330 ~dagfl~----pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  330 ADAGFLR----PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             ecccchh----HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            1  2333    3455665443 337777888888777543222 22222 368888888877665555544444555544

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=1.7  Score=51.75  Aligned_cols=225  Identities=11%  Similarity=0.093  Sum_probs=138.5

Q ss_pred             HHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH
Q 007670            9 VNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT   81 (594)
Q Consensus         9 vl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp   81 (594)
                      +-.+++.+.|+.  +.-.|+++|..++++=.+..   -.-+|....++..+.++++==-||+.+..||+.+  .|   ||
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i---l~  805 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI---LP  805 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh---HH
Confidence            444556666655  56677777777777543322   2334555566666777777777777777777764  22   22


Q ss_pred             HHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC
Q 007670           82 KIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP  155 (594)
Q Consensus        82 kIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~  155 (594)
                      .+.......=+-  +|-.++  .-+|++.++...  ++... +.-||+...+   .+++-..-++++..|..+++...-.
T Consensus       806 dL~e~Y~s~k~k~~~d~~lk--VGEai~k~~qa~--Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLK--VGEAILKVAQAL--GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             HHHHHHHhcccCCCccceeh--HHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            222222211111  232221  114555555444  22222 5555555544   4666666788999999999887654


Q ss_pred             cchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcC-cCC----chHHHHHHHHhhhcC-CcHHHHHHHHHHHHH
Q 007670          156 DAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAV-DGS----GLKGLVSCLLGFLSS-QDWAARKAAAEALWR  228 (594)
Q Consensus       156 i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~-~~p----yf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~  228 (594)
                      .-..++.+...+..+...+ .+.+|.+++.+|..+-+.-|. ..|    |.-.+...+..+... +|=.+|.-|+.+|-.
T Consensus       882 vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  882 VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            4457888888888888776 888999999999987765443 345    333445555555554 567789999999998


Q ss_pred             HHHHcC-Cccchh
Q 007670          229 LAVVEK-DAVPEF  240 (594)
Q Consensus       229 IA~a~g-d~f~py  240 (594)
                      |-.+.. ..+.|-
T Consensus       962 i~a~l~n~~~~pq  974 (982)
T KOG4653|consen  962 IQAALENDDDSPQ  974 (982)
T ss_pred             HHHHHHhcccChh
Confidence            888765 566653

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=0.69  Score=54.86  Aligned_cols=186  Identities=13%  Similarity=0.083  Sum_probs=138.5

Q ss_pred             cCCCCCCcchHHHHHHHHHHHh--hhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHH
Q 007670           51 TNSSDKPGVRKECIHVIATLSN--SHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA  128 (594)
Q Consensus        51 ~~ss~kp~~RKaaI~lLGvlae--~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~ea  128 (594)
                      +..++.++.|-+|++-|.-+.+  .+.-.-+..+++.+...-|+|-|+=|---|..++..||+.+.+    .+++-|.+.
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~dL~e~  810 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPDLSEE  810 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHHHHHH
Confidence            3567889999999999999999  5533347899999999999999999999999999999999732    256666663


Q ss_pred             HccCCChh---HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-CcCCchHHHH
Q 007670          129 LFTEQDTN---AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLV  204 (594)
Q Consensus       129 L~~eq~k~---vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf~~lm  204 (594)
                      -..+++++   --...--|+-++++..++-...|+..|..-+.+-++.|.-.-|+..++.+|=+-+.-. ....+|-.+.
T Consensus       811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~  890 (982)
T KOG4653|consen  811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVL  890 (982)
T ss_pred             HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            32333333   1112227788999999988889999999999999998866667777777776554321 1123566666


Q ss_pred             HHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670          205 SCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEF  240 (594)
Q Consensus       205 ~~L~e~L~-seDw~lRKaAaDaLg~IA~a~gd~f~py  240 (594)
                      .++....+ +..-.+|.+|++.|..+-...|..+.|+
T Consensus       891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi  927 (982)
T KOG4653|consen  891 QLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI  927 (982)
T ss_pred             HHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence            66666655 5568899999999999998888666663

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.93  E-value=0.73  Score=51.85  Aligned_cols=256  Identities=16%  Similarity=0.141  Sum_probs=150.4

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccc
Q 007670            5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY   79 (594)
Q Consensus         5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isph   79 (594)
                      +-.-++.+|..-....|.-.-++.|-.++++-|=++     +--|..++..++.+.++++|-.++.++|.++..|...|-
T Consensus       107 ~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pe  186 (728)
T KOG4535|consen  107 LHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPE  186 (728)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHH
Confidence            334456666666666666667777778888877666     445778899999999999999999999999999866565


Q ss_pred             hHHHHHHH----------------HhhhcCCC------------------------------------------------
Q 007670           80 ITKIINSI----------------TRNFRDKN------------------------------------------------   95 (594)
Q Consensus        80 LpkIL~~I----------------vrrLkD~D------------------------------------------------   95 (594)
                      +.-.+..-                .+.|-|.+                                                
T Consensus       187 i~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~  266 (728)
T KOG4535|consen  187 VQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTY  266 (728)
T ss_pred             HHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCcc
Confidence            55554322                24444433                                                


Q ss_pred             --hhHHHHHHHHHHhhchhhhc--chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--cc---hhHHHHHHH
Q 007670           96 --SALQATCISTVSSLSPRVGA--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--DA---GKLGRMEVR  166 (594)
Q Consensus        96 --s~VR~Ac~~ALG~LAe~l~~--~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~--i~---~yL~~L~~R  166 (594)
                        +.||--|...|..||.|+.=  .-+.-+.+-+...+ ++..+.+|.-++.||+++...+...  +.   .-++.=+-+
T Consensus       267 ~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw  345 (728)
T KOG4535|consen  267 EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW  345 (728)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence              56777888888888888721  11111334344444 7889999999999999998887421  11   112211112


Q ss_pred             HH--------HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-C
Q 007670          167 LE--------RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-D  235 (594)
Q Consensus       167 L~--------klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d  235 (594)
                      +.        .+-++..+-.|.++-.++.+|..+.-...|.-.  ..+-.+..|-.+++--+|.+|+-+++.+..+.+ .
T Consensus       346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr  425 (728)
T KOG4535|consen  346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR  425 (728)
T ss_pred             HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence            22        223344455555544444433322211122211  122333334333445566677777776666555 2


Q ss_pred             ccchhhhH----HHHHHHhcchhH-HHHHHh
Q 007670          236 AVPEFKGK----CLKIFESKRFDK-MIEAWK  261 (594)
Q Consensus       236 ~f~py~~~----~m~sLEs~RfDK-~i~lWk  261 (594)
                      ...-|+..    ++.+|++.-|-| ..-+|.
T Consensus       426 ~d~~fv~~aa~~il~sl~d~~ln~r~Kaawt  456 (728)
T KOG4535|consen  426 QDVIFVADAANAILMSLEDKSLNVRAKAAWS  456 (728)
T ss_pred             hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHH
Confidence            33334444    445666666666 555665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=1.4  Score=47.58  Aligned_cols=173  Identities=17%  Similarity=0.175  Sum_probs=114.4

Q ss_pred             HHHHhhcC-CChhHHHHHHHHHHHHHhhcCCCC-------hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------
Q 007670            9 VNGLLNKL-SDRDTYSQAAKELDSIAATVDPTL-------LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------   74 (594)
Q Consensus         9 vl~~L~KL-sDrDT~r~A~~eLD~LA~~Lppe~-------lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------   74 (594)
                      .+.+++.. .|-+....|+++|..++.+++.-.       +.+++.    +..+.++..|+.|...+|.++.--      
T Consensus        86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~  161 (342)
T KOG2160|consen   86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ  161 (342)
T ss_pred             hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            66777766 488899999999999999986322       445444    566788999999999999996544      


Q ss_pred             -ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH-h-----HHHHHHHHc-cCCChhHHHHHHHHHH
Q 007670           75 -NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M-----LKLLSDALF-TEQDTNAQVGAALCLA  146 (594)
Q Consensus        75 -~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~-----lkPL~eaL~-~eq~k~vQ~~Aa~ALa  146 (594)
                       +=.-.|++++..+.   +|.+-.||..++.|++.|-.+-  ++... |     ..-|..+|- +..++..|..|+.=++
T Consensus       162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~  236 (342)
T KOG2160|consen  162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLS  236 (342)
T ss_pred             HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence             22336777777666   6677789999999999887776  33222 1     223445552 2357778888888899


Q ss_pred             HHHhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH
Q 007670          147 ATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI  190 (594)
Q Consensus       147 avvE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA  190 (594)
                      .+++.....-...=..++++...-+.+. .+.++..++.++-+..
T Consensus       237 ~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  237 LLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            9988764332222222344433333333 5555666665555544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.82  E-value=1.7  Score=52.33  Aligned_cols=165  Identities=15%  Similarity=0.182  Sum_probs=98.1

Q ss_pred             HHHHHHHHHH-hhcCCCC-hHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh-----ccccchHHHHHHHHhhhcCCC
Q 007670           24 QAAKELDSIA-ATVDPTL-LPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-----NLSPYITKIINSITRNFRDKN   95 (594)
Q Consensus        24 ~A~~eLD~LA-~~Lppe~-lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h-----~isphLpkIL~~IvrrLkD~D   95 (594)
                      -|...|-.++ ..++-.. +.-.+.+...... +..-++|=+|..+|-.+.+.+     .++||+|.||.-+.+..++-+
T Consensus       481 rac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E  560 (1010)
T KOG1991|consen  481 RACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE  560 (1010)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence            3455555555 4454333 6666766666655 566799999999999985544     699999999999999999877


Q ss_pred             hhHHHHHH-HHHHhhchhhhcchhHH-hHHHHHHHHc---------cCCChhHHHHHHHHH---HHHHhhcCCCc--chh
Q 007670           96 SALQATCI-STVSSLSPRVGASAFVT-MLKLLSDALF---------TEQDTNAQVGAALCL---AATIDAAQDPD--AGK  159 (594)
Q Consensus        96 s~VR~Ac~-~ALG~LAe~l~~~~~~~-~lkPL~eaL~---------~eq~k~vQ~~Aa~AL---aavvE~l~~~i--~~y  159 (594)
                      .-.-.-+. .-++.+++.+  .|+.. ++..|.+...         .+.+..-|++|.+||   ..++..+++-+  ..+
T Consensus       561 nd~Lt~vme~iV~~fseEl--sPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~  638 (1010)
T KOG1991|consen  561 NDDLTNVMEKIVCKFSEEL--SPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ  638 (1010)
T ss_pred             hhHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            54322222 3346677777  45543 5555544442         111222334444444   45555554332  344


Q ss_pred             HHH-HHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670          160 LGR-MEVRLERLLKSEVFKAKAAGLVVVGSVI  190 (594)
Q Consensus       160 L~~-L~~RL~klL~s~~fkaK~alL~aIGSiA  190 (594)
                      +.. +.+=+...|++.-...-.-+++.+-+.-
T Consensus       639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t  670 (1010)
T KOG1991|consen  639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLT  670 (1010)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence            433 5555666676665555555555544433

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.70  E-value=0.28  Score=52.77  Aligned_cols=116  Identities=13%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHHhcC
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-------VFKAKAAGLVVVGSVIGSG  193 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-------~fkaK~alL~aIGSiA~a~  193 (594)
                      |+.=+.+++.++ +...       ..++++.+..+  +.|+.|+|+|+..+...       +...-..++..+.|+..=.
T Consensus       179 yf~~It~a~~~~-~~~~-------r~~aL~sL~tD--~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~  248 (343)
T cd08050         179 YFEEITEALVGS-NEEK-------RREALQSLRTD--PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP  248 (343)
T ss_pred             HHHHHHHHHhCC-CHHH-------HHHHHHHhccC--CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence            666677777542 2222       22233333222  23444444444444222       2333334555666666444


Q ss_pred             cCcC-CchHHHHHHHHhhhc----------CCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670          194 AVDG-SGLKGLVSCLLGFLS----------SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK  246 (594)
Q Consensus       194 ~~~~-pyf~~lm~~L~e~L~----------seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~  246 (594)
                      ..+. ||+-.+||.+..||.          .+.|.+|..|+..|+.|+...+....-....+++
T Consensus       249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~  312 (343)
T cd08050         249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITR  312 (343)
T ss_pred             CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence            4554 999999999999984          2569999999999999999877543333444443

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=94.60  E-value=0.49  Score=53.61  Aligned_cols=183  Identities=13%  Similarity=0.146  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc-----hHHHHHHHHh--
Q 007670           21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY-----ITKIINSITR--   89 (594)
Q Consensus        21 T~r~A~~eLD~LA~~L-ppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph-----LpkIL~~Ivr--   89 (594)
                      +..-|++.|-.+...+ .|..  +..|+..+........+..|..|++++|.++..+ .-.+.     +..+++.+.+  
T Consensus       372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l  451 (574)
T smart00638      372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL  451 (574)
T ss_pred             CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence            3344555566655555 2333  7777776655445556789999999999998733 11111     2444444444  


Q ss_pred             --hhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 007670           90 --NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL  167 (594)
Q Consensus        90 --rLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL  167 (594)
                        ..++.|...+.++..|||.+....+    ...+.|++..= .+....++..|..||.++.+..+.       .+.+.|
T Consensus       452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~----i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l  519 (574)
T smart00638      452 QQAVSKGDEEEIQLYLKALGNAGHPSS----IKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRDPR-------KVQEVL  519 (574)
T ss_pred             HHHHhcCCchheeeHHHhhhccCChhH----HHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhCch-------HHHHHH
Confidence              4445677788999999999887661    11555555411 223567888999999988875443       233345


Q ss_pred             HHHhcCC--chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHH
Q 007670          168 ERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAA  223 (594)
Q Consensus       168 ~klL~s~--~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-seDw~lRKaAa  223 (594)
                      +.++.+.  +..++.+++-++-   .    .-|- ...+..|..++. ..+-+++....
T Consensus       520 ~~i~~n~~e~~EvRiaA~~~lm---~----t~P~-~~~l~~ia~~l~~E~~~QV~sfv~  570 (574)
T smart00638      520 LPIYLNRAEPPEVRMAAVLVLM---E----TKPS-VALLQRIAELLNKEPNLQVASFVY  570 (574)
T ss_pred             HHHHcCCCCChHHHHHHHHHHH---h----cCCC-HHHHHHHHHHHhhcCcHHHHHHhH
Confidence            5555443  6666766443332   1    1143 255666666665 45777776554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=94.57  E-value=0.5  Score=48.99  Aligned_cols=142  Identities=11%  Similarity=0.028  Sum_probs=97.1

Q ss_pred             HHhhhcC-CChhHHHHHHHHHHhhchhhhcchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--cchhHH
Q 007670           87 ITRNFRD-KNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--DAGKLG  161 (594)
Q Consensus        87 IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~--i~~yL~  161 (594)
                      ++..|+. .|+.++..++.|+|..+.+-..+..+.  =..+++..|+..+++.++..|..||+.+-.+.+..  +..|++
T Consensus        17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~   96 (254)
T PF04826_consen   17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP   96 (254)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            3344453 689999999999999988875444332  34455556658889999999999999775544322  245777


Q ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .+|..+.-.  .-+....-+.+.+++.+. +-......+...|+.+...|...+-.+|-.++-+|.-++.
T Consensus        97 ~Vc~~~~s~--~lns~~Q~agLrlL~nLt-v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   97 QVCEETVSS--PLNSEVQLAGLRLLTNLT-VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHHHhcC--CCCCHHHHHHHHHHHccC-CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            777766542  113445667777777664 2222234455567788888888888889899999988886

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=94.53  E-value=0.19  Score=45.30  Aligned_cols=89  Identities=15%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          158 GKLGRMEVRLERLLKS----EVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       158 ~yL~~L~~RL~klL~s----~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +++--++.++...+++    .+..-|..++.+|+.++..++.. .++.+++|.+|+..|..+  ++|..|+++...+...
T Consensus         7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~   84 (107)
T PF08064_consen    7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT   84 (107)
T ss_pred             HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH
Confidence            4555677788777776    47777999999999999877665 488999999999999887  8999999999999999


Q ss_pred             cC-CccchhhhHHHHHH
Q 007670          233 EK-DAVPEFKGKCLKIF  248 (594)
Q Consensus       233 ~g-d~f~py~~~~m~sL  248 (594)
                      +. +.+.|+.+.+..++
T Consensus        85 L~~~~l~~ll~~~~~~l  101 (107)
T PF08064_consen   85 LDEEDLGPLLDQIFAIL  101 (107)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            87 68888888887654

; GO: 0004674 protein serine/threonine kinase activity

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=94.49  E-value=0.9  Score=52.07  Aligned_cols=210  Identities=12%  Similarity=0.111  Sum_probs=129.3

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      +..|.+.|....++---.+--|+-+++-.+++...-..++...++.+.-.|+-+.++.|-+|...|.+||-..  +..+.
T Consensus       262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~--P~kv~  339 (898)
T COG5240         262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY--PQKVS  339 (898)
T ss_pred             HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC--Cceee
Confidence            4444555555444433456677777776666666445568899999999999999999999999999999887  33345


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL  200 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf  200 (594)
                      .+.|=+|.|+.+.|+++.   -||+..++-.-.++-...|-.+++-++-=+ +++||.  .++.||.|+.-   -|+.--
T Consensus       340 vcN~evEsLIsd~Nr~Is---tyAITtLLKTGt~e~idrLv~~I~sfvhD~-SD~FKi--I~ida~rsLsl---~Fp~k~  410 (898)
T COG5240         340 VCNKEVESLISDENRTIS---TYAITTLLKTGTEETIDRLVNLIPSFVHDM-SDGFKI--IAIDALRSLSL---LFPSKK  410 (898)
T ss_pred             ecChhHHHHhhcccccch---HHHHHHHHHcCchhhHHHHHHHHHHHHHhh-ccCceE--EeHHHHHHHHh---hCcHHH
Confidence            888999999888888764   566666665544432333333333322222 346653  46777777652   122111


Q ss_pred             HHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-HHHHHh
Q 007670          201 KGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-MIEAWK  261 (594)
Q Consensus       201 ~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-~i~lWk  261 (594)
                      ...+.-|...|-+ ..+.-.+++.|+|..+....++.=.--.+.++.-+|.|.|-+ +.....
T Consensus       411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~  473 (898)
T COG5240         411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILG  473 (898)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            2233333333333 357777888888877766554322222344556777888877 444333

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=1.9  Score=51.24  Aligned_cols=216  Identities=15%  Similarity=0.096  Sum_probs=132.8

Q ss_pred             CChhHH-HHHHHHHHHHHhhcCCCChHHHHHhhhhc------CCCCCCcchHHHHHHHHHHHhh----------------
Q 007670           17 SDRDTY-SQAAKELDSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNS----------------   73 (594)
Q Consensus        17 sDrDT~-r~A~~eLD~LA~~Lppe~lp~fLs~L~e~------~ss~kp~~RKaaI~lLGvlae~----------------   73 (594)
                      +|-||+ |.|.+.+..|..+......+.|-..+...      ..+-+|-.+--+|-++..++.-                
T Consensus       373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd  452 (960)
T KOG1992|consen  373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD  452 (960)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence            577775 56667777799999655466665554332      3466777777777777665322                


Q ss_pred             ----h--cccc-------------------------------chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc-
Q 007670           74 ----H--NLSP-------------------------------YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-  115 (594)
Q Consensus        74 ----h--~isp-------------------------------hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-  115 (594)
                          +  .+.|                               ||=.++|.+++.|+-+..+|+.=++.++-.+-..... 
T Consensus       453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~  532 (960)
T KOG1992|consen  453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS  532 (960)
T ss_pred             HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence                1  2223                               3445788888999888889988777666554322211 


Q ss_pred             ----------chhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh----cCC-chhhH
Q 007670          116 ----------SAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL----KSE-VFKAK  179 (594)
Q Consensus       116 ----------~~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL----~s~-~fkaK  179 (594)
                                .|+. .++..||+++- -+++.=-.=..-|+-+++--+++.+.|+.+.++.+|.+.+    ++| +.+.-
T Consensus       533 ~~~if~~~~iap~~~~ll~nLf~a~s-~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fn  611 (960)
T KOG1992|consen  533 NAKIFGAEDIAPFVEILLTNLFKALS-LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFN  611 (960)
T ss_pred             cccccchhhcchHHHHHHHHHHHhcc-CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhH
Confidence                      1222 27777777773 2222111123456778888888888888888777777666    555 44444


Q ss_pred             HHHHHHHHHHHhc-CcCc---C-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          180 AAGLVVVGSVIGS-GAVD---G-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       180 ~alL~aIGSiA~a-~~~~---~-pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      --+...||.++.- .+..   . .+-.+++|.++..|..+-.+.=--+...|+.+....
T Consensus       612 HYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~  670 (960)
T KOG1992|consen  612 HYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHS  670 (960)
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5588899988843 3332   2 334456788777777665444445556666666553

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=94.29  E-value=0.19  Score=45.25  Aligned_cols=73  Identities=12%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             CCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670           55 DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL  129 (594)
Q Consensus        55 ~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL  129 (594)
                      .....|+.++++++.+.+.+  .+++++|+|+.++...|..+  .+|..|+.+-..|...+.......++..++.++
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l  101 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL  101 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            44577999999999998866  99999999999999999887  899999999999999885433223444444443

; GO: 0004674 protein serine/threonine kinase activity

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.28  E-value=1.7  Score=41.84  Aligned_cols=133  Identities=14%  Similarity=0.140  Sum_probs=101.3

Q ss_pred             ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH----HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007670           77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA  152 (594)
Q Consensus        77 sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l  152 (594)
                      ...+++++.-|...|+++++.-|-+.+.-++.++++..-+.+.    ..+.-|+..|-....+.+-..|+.+|..+++.+
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~   99 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI   99 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            4579999999999999999999999998888888886323332    266666666633445667779999999999987


Q ss_pred             CCCc-------chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhh
Q 007670          153 QDPD-------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFL  211 (594)
Q Consensus       153 ~~~i-------~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L  211 (594)
                      ...+       .|.++++.+-++++++.  ......++.++..+... ...|.||...+-..+.++|
T Consensus       100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll  164 (165)
T PF08167_consen  100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL  164 (165)
T ss_pred             cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence            4332       47889999999999975  33566788999988854 4557799888877777665

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=0.96  Score=54.74  Aligned_cols=149  Identities=18%  Similarity=0.141  Sum_probs=105.9

Q ss_pred             cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCC-hhHHHHHHHHHHHHHhhcCCCc
Q 007670           78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQD-TNAQVGAALCLAATIDAAQDPD  156 (594)
Q Consensus        78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~-k~vQ~~Aa~ALaavvE~l~~~i  156 (594)
                      -.++.++-++...|+|.|+.||--+++.+|.++..+...=...++.-.++ +++..+ ..+=-|||+|||.+--.  .-+
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~r--GlL  413 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALR--GLL  413 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhc--CCc
Confidence            45778888999999999999999999999999999952112237777777 444433 55556999999988542  112


Q ss_pred             c-hhHHHHHHHHHHHhcC--------CchhhHHHHHHHHHHHHhcCcC--cCCchHHHHHHHHh-hhcCCcHHHHHHHHH
Q 007670          157 A-GKLGRMEVRLERLLKS--------EVFKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLLG-FLSSQDWAARKAAAE  224 (594)
Q Consensus       157 ~-~yL~~L~~RL~klL~s--------~~fkaK~alL~aIGSiA~a~~~--~~pyf~~lm~~L~e-~L~seDw~lRKaAaD  224 (594)
                      . ..+..++|=+.|.|.-        .+-+++-++.-++=|++.+-.-  ..||+..+.++|.- .+-+.+-..|.||.-
T Consensus       414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2 2466677777777742        2445777877788888877533  24888777766644 466889999999887


Q ss_pred             HHHHH
Q 007670          225 ALWRL  229 (594)
Q Consensus       225 aLg~I  229 (594)
                      ||...
T Consensus       494 AlqE~  498 (1133)
T KOG1943|consen  494 ALQEN  498 (1133)
T ss_pred             HHHHH
Confidence            77554

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=3.8  Score=48.35  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=110.6

Q ss_pred             hHHHHHhhhhcC----C---C-CCCcchHHHHHHHHHHHhhh-ccccc---hHH-HHHHHHhhhcCCChhHHHHHHHHHH
Q 007670           41 LPTFLSCILSTN----S---S-DKPGVRKECIHVIATLSNSH-NLSPY---ITK-IINSITRNFRDKNSALQATCISTVS  107 (594)
Q Consensus        41 lp~fLs~L~e~~----s---s-~kp~~RKaaI~lLGvlae~h-~isph---Lpk-IL~~IvrrLkD~Ds~VR~Ac~~ALG  107 (594)
                      |..+|+.+.+..    .   + .++.+...|++.|+.+-..- ..+|.   |+. |+++|.-.++++---++.-+|+.+.
T Consensus       406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is  485 (970)
T COG5656         406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence            555555554432    1   1 33555677889888887632 33333   333 4567777889998889999999999


Q ss_pred             hhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCcchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 007670          108 SLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLV  184 (594)
Q Consensus       108 ~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l--~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~  184 (594)
                      .+.+...+..... .+......| .++.-.|++-||.||.-++-+.  .+..-+++|.+|++|++|-+.=...+   +-+
T Consensus       486 ~~eeDfkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~---LS~  561 (970)
T COG5656         486 TIEEDFKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP---LSM  561 (970)
T ss_pred             HHHHhcccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH---HHH
Confidence            9977775554332 555555555 4588889999999999999875  33345789999999999875433333   233


Q ss_pred             HHHHHH-hcCcCcCCchHHHHHHHHh
Q 007670          185 VVGSVI-GSGAVDGSGLKGLVSCLLG  209 (594)
Q Consensus       185 aIGSiA-~a~~~~~pyf~~lm~~L~e  209 (594)
                      +.-+++ +=+.+..||.+.++..|.+
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~  587 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVR  587 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHH
Confidence            333333 2234556999888888876

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.11  E-value=0.43  Score=47.24  Aligned_cols=136  Identities=16%  Similarity=0.151  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhhchhhhcc----------hhH-----HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--------C
Q 007670           98 LQATCISTVSSLSPRVGAS----------AFV-----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--------D  154 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~----------~~~-----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~--------~  154 (594)
                      ||.++...|..++......          |..     ..-.+|+..++.|+++.+..+|+.+|+.++|+..        .
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            6777888887777775321          111     1445666777788999999999999999999851        1


Q ss_pred             C-c-ch------hHHH----HHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcC--c-CCchHHHHHHHHhhhcCCcHHH
Q 007670          155 P-D-AG------KLGR----MEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAV--D-GSGLKGLVSCLLGFLSSQDWAA  218 (594)
Q Consensus       155 ~-i-~~------yL~~----L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~--~-~pyf~~lm~~L~e~L~seDw~l  218 (594)
                      . . ..      .|..    +=..|..+|..+ +...-.+++-+++.++++-.=  . ..++..++..+..++.+.|-++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1 0 11      1222    222356666655 666677788888888866422  1 3778889999999999999999


Q ss_pred             HHHHHHHHHHHHHHc
Q 007670          219 RKAAAEALWRLAVVE  233 (594)
Q Consensus       219 RKaAaDaLg~IA~a~  233 (594)
                      |-++.-+|+.+..+.
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999998764

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=93.99  E-value=0.21  Score=45.36  Aligned_cols=56  Identities=13%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             cchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc
Q 007670           58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA  115 (594)
Q Consensus        58 ~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~  115 (594)
                      ..||.+|++++.+.+.+  .++.++|+|+.++...|..|+  +|..|+.+...|-..+.+
T Consensus        30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~   87 (107)
T smart00802       30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE   87 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence            45999999999998877  999999999999999998776  999999999999888853

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.97  E-value=3.5  Score=48.71  Aligned_cols=229  Identities=18%  Similarity=0.230  Sum_probs=134.4

Q ss_pred             CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHH--------HHHH
Q 007670           37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCI--------STVS  107 (594)
Q Consensus        37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~--------~ALG  107 (594)
                      .|+-+.+|++.|.+.+.+..+++||.||++++.+-.-. .+-|--|.|+....-+=+||. .-|+|-.        .|+.
T Consensus       128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl~  206 (948)
T KOG1058|consen  128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERALN  206 (948)
T ss_pred             cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHHH
Confidence            45558899999999999999999999999999986555 666889999987776655554 1233321        1222


Q ss_pred             hhchhhhc----------------------ch-hHH-hHHHHHHHHcc----------------CCChhHHHHHHHHHHH
Q 007670          108 SLSPRVGA----------------------SA-FVT-MLKLLSDALFT----------------EQDTNAQVGAALCLAA  147 (594)
Q Consensus       108 ~LAe~l~~----------------------~~-~~~-~lkPL~eaL~~----------------eq~k~vQ~~Aa~ALaa  147 (594)
                      -|...+.+                      .| ... |++-++..|..                .++|.+-.+|+.|+-.
T Consensus       207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~  286 (948)
T KOG1058|consen  207 YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYID  286 (948)
T ss_pred             HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHH
Confidence            22222211                      01 111 55555555531                3577777788888877


Q ss_pred             HHhhcCCCcc----------------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-------------------
Q 007670          148 TIDAAQDPDA----------------GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-------------------  192 (594)
Q Consensus       148 vvE~l~~~i~----------------~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-------------------  192 (594)
                      +++...+--.                ..|..|.--++.+|+++++.++.-.++.+=-++..                   
T Consensus       287 l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~  366 (948)
T KOG1058|consen  287 LLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHN  366 (948)
T ss_pred             HHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccc
Confidence            7776533211                12455555688889888766544443322222211                   


Q ss_pred             --------------------CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH-HHHH--
Q 007670          193 --------------------GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL-KIFE--  249 (594)
Q Consensus       193 --------------------~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m-~sLE--  249 (594)
                                          +--|+.+...+++.|.+||.+..-   ++|.+.|.-|-.+. +.|......++ +.+|  
T Consensus       367 ~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~---~aas~vl~FvrE~i-ek~p~Lr~~ii~~l~~~~  442 (948)
T KOG1058|consen  367 EESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNE---AAASDVLMFVREAI-EKFPNLRASIIEKLLETF  442 (948)
T ss_pred             cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHH-HhCchHHHHHHHHHHHhh
Confidence                                111334555677888888876543   34677766665543 33443444444 3333  


Q ss_pred             -hcchhH------------------HHHHHhhcCCCCCCC
Q 007670          250 -SKRFDK------------------MIEAWKQVPDLSEEA  270 (594)
Q Consensus       250 -s~RfDK------------------~i~lWk~i~~v~~~~  270 (594)
                       ..|--|                  ....||.|--.++++
T Consensus       443 ~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEv  482 (948)
T KOG1058|consen  443 PQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEV  482 (948)
T ss_pred             hhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence             223333                  557899887777666

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=1.5  Score=47.37  Aligned_cols=190  Identities=16%  Similarity=0.172  Sum_probs=123.1

Q ss_pred             hHHHHHhh---hhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670           41 LPTFLSCI---LSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV  113 (594)
Q Consensus        41 lp~fLs~L---~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      +..++..+   ..+.++.++..|..|+--|..+++..    .+.+ +. -|..+...|+++++.||..|++++|..+..=
T Consensus        78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~-~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN  155 (342)
T KOG2160|consen   78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS-LG-GLVPLLGYLENSDAELRELAARVIGTAVQNN  155 (342)
T ss_pred             HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-cc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC
Confidence            44455552   22245666777888888899988877    2222 22 2333444999999999999999999999887


Q ss_pred             hcch-hH--H-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHHHHhcC--CchhhHHHHHHHH
Q 007670          114 GASA-FV--T-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKS--EVFKAKAAGLVVV  186 (594)
Q Consensus       114 ~~~~-~~--~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~klL~s--~~fkaK~alL~aI  186 (594)
                      .+.- ..  . ++..|+..|..+..-++-..|.+|+-..|-+-.+.....+.- =..-|..+|.+  ...+.|.-++-+|
T Consensus       156 P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll  235 (342)
T KOG2160|consen  156 PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL  235 (342)
T ss_pred             HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            5421 11  1 899999999655555566899999999999865444332211 02235666766  4566666677778


Q ss_pred             HHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          187 GSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       187 GSiA~a~~~~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +.+...-..-.-.+..  .-..+..+....+|+.+-.|.+++-+....
T Consensus       236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  236 SLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            8777553221111111  123445556677899999999998888775

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=93.95  E-value=3.6  Score=43.71  Aligned_cols=173  Identities=16%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             cchHHHHHHHHHHHhhhcc-ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc---chhH-HhHHHHHHHHc--
Q 007670           58 GVRKECIHVIATLSNSHNL-SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFV-TMLKLLSDALF--  130 (594)
Q Consensus        58 ~~RKaaI~lLGvlae~h~i-sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~---~~~~-~~lkPL~eaL~--  130 (594)
                      ....+.+.+|+.-+.  ++ ..--++++.++.++++|..+.||++-+..+|.+......   ..+. .|+++|++.+-  
T Consensus        38 ~aL~~~l~al~~~~~--~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  115 (339)
T PF12074_consen   38 AALSALLSALFKHLF--FLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEA  115 (339)
T ss_pred             HHHHHHHHHHHHHHH--HhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHH
Confidence            344444444443222  33 445678899999999999999999999999998761100   1122 25666665552  


Q ss_pred             -cCCChhHH---HHHHHHHHHHHhh--------------cCCCcchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHh
Q 007670          131 -TEQDTNAQ---VGAALCLAATIDA--------------AQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIG  191 (594)
Q Consensus       131 -~eq~k~vQ---~~Aa~ALaavvE~--------------l~~~i~~yL~~L~~RL~klL-~s~~fkaK~alL~aIGSiA~  191 (594)
                       ..+-+.+|   ..+|+|+..+...              +-....+.+ .+=+|++..| ..+...   -++-++-+++.
T Consensus       116 ~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~-ll~~kvyskl~~~~d~~---w~~~al~~~~~  191 (339)
T PF12074_consen  116 SANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSF-LLSEKVYSKLASEEDLC---WLLRALEALLS  191 (339)
T ss_pred             HhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcch-hcCHHHHhccCCHhHHH---HHHHHHHHHHh
Confidence             23344444   3455555551110              000001110 1233555553 222332   23333333332


Q ss_pred             c-CcCcCCc-hHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCc
Q 007670          192 S-GAVDGSG-LKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDA  236 (594)
Q Consensus       192 a-~~~~~py-f~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~  236 (594)
                      . ....... ....-+.+.-++.+.  .|.+|+.|.++|..+....+..
T Consensus       192 ~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~  240 (339)
T PF12074_consen  192 DHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL  240 (339)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence            1 1111111 234456666667776  8999999999999998776544

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=93.95  E-value=0.31  Score=51.92  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhcCcCcC-CchHHHHHHHHhhhc-----C-----CcHHHHHHHHHHHHHHHHHcCC---ccchhh
Q 007670          181 AGLVVVGSVIGSGAVDG-SGLKGLVSCLLGFLS-----S-----QDWAARKAAAEALWRLAVVEKD---AVPEFK  241 (594)
Q Consensus       181 alL~aIGSiA~a~~~~~-pyf~~lm~~L~e~L~-----s-----eDw~lRKaAaDaLg~IA~a~gd---~f~py~  241 (594)
                      .++..+.|+-.---.|. ||+.++||.|..||-     +     +.+++|+.|++.|+.+..-.+.   .+.|.+
T Consensus       255 Tv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRv  329 (450)
T COG5095         255 TVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRV  329 (450)
T ss_pred             HHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHH
Confidence            35556666655555675 999999999999974     2     2488999999999999887664   444443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.90  E-value=0.8  Score=53.96  Aligned_cols=212  Identities=13%  Similarity=0.145  Sum_probs=116.6

Q ss_pred             HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc-chHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 007670           32 IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-YITKIINSITRNFRDKNSALQATCISTVSSLS  110 (594)
Q Consensus        32 LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp-hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA  110 (594)
                      +..-.+||..+-+.+.+.+-.++++|++||-|+++.-   +.|...| .++-+++.-.++|.|.+.+|--|.+.-+-.++
T Consensus       131 lg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~---r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c  207 (866)
T KOG1062|consen  131 LGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAV---RFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC  207 (866)
T ss_pred             hhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHH---HHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence            3333467778888888888888888888888877643   3333333 45556666777888888776555444444443


Q ss_pred             hhhhc----------------------------------chhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670          111 PRVGA----------------------------------SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP  155 (594)
Q Consensus       111 e~l~~----------------------------------~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~  155 (594)
                      +.-.+                                  .||-. -+.-|+..| |..++..-...+--|+.+.-+.+.-
T Consensus       208 ~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL-Gq~d~daSd~M~DiLaqvatntdss  286 (866)
T KOG1062|consen  208 KISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL-GQNDADASDLMNDILAQVATNTDSS  286 (866)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhccccc
Confidence            33110                                  01111 111122222 5555655566666666666654322


Q ss_pred             c-c--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc----------------hHHHHHHHHhhhcCCcH
Q 007670          156 D-A--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG----------------LKGLVSCLLGFLSSQDW  216 (594)
Q Consensus       156 i-~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py----------------f~~lm~~L~e~L~seDw  216 (594)
                      - .  .+|-.-+..+..+...+..  +..++.+||-.-.--.-..-|                ...==..+.+||.+.|=
T Consensus       287 kN~GnAILYE~V~TI~~I~~~~~L--rvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~  364 (866)
T KOG1062|consen  287 KNAGNAILYECVRTIMDIRSNSGL--RVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDV  364 (866)
T ss_pred             ccchhHHHHHHHHHHHhccCCchH--HHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcH
Confidence            1 1  1233322223333322222  223344444322211111111                11112356788889999


Q ss_pred             HHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhc
Q 007670          217 AARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK  251 (594)
Q Consensus       217 ~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~  251 (594)
                      ..|+-|+|.+..|.-  ..+++..+.++|.-||.+
T Consensus       365 SIkrralELs~~lvn--~~Nv~~mv~eLl~fL~~~  397 (866)
T KOG1062|consen  365 SIKRRALELSYALVN--ESNVRVMVKELLEFLESS  397 (866)
T ss_pred             HHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHhc
Confidence            999999999888744  268899999999999999

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=0.88  Score=56.68  Aligned_cols=187  Identities=19%  Similarity=0.139  Sum_probs=133.5

Q ss_pred             HHHHHHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCChH----HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--cc
Q 007670            5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLP----TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL   76 (594)
Q Consensus         5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~lp----~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~i   76 (594)
                      +...+..++-||+=||  |.--|+++|-.+....+.+.+-    .+...+.+..-+++..+|.+..-.|-.+....  .+
T Consensus        39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l  118 (1312)
T KOG0803|consen   39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL  118 (1312)
T ss_pred             cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566778888998788  8999999999999988766622    23344456677888999999999999999988  89


Q ss_pred             ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH-HhHHHHHHHH-----cc------------------C
Q 007670           77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDAL-----FT------------------E  132 (594)
Q Consensus        77 sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~-~~lkPL~eaL-----~~------------------e  132 (594)
                      +|||..++|.+.=...|++..|..|+..+.-...+.- +.+.. .++.|-+..+     .+                  .
T Consensus       119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~e-k~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~  197 (1312)
T KOG0803|consen  119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEE-KDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES  197 (1312)
T ss_pred             hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChh-hhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence            9999999999999999999999999998877665511 11211 1222222222     10                  1


Q ss_pred             CChhHHHHHHHHHHHHHh-hcCCCcch---h-H--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          133 QDTNAQVGAALCLAATID-AAQDPDAG---K-L--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       133 q~k~vQ~~Aa~ALaavvE-~l~~~i~~---y-L--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                      .-+-|-..+..+|.++.. ..++....   + +  ..--..+-++++++...+|.+++.++-++...
T Consensus       198 k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~  264 (1312)
T KOG0803|consen  198 KYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDD  264 (1312)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhh
Confidence            123344578888888874 33333222   2 2  22445789999999988999988888877744

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=1.2  Score=51.84  Aligned_cols=183  Identities=16%  Similarity=0.171  Sum_probs=111.1

Q ss_pred             HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----h-
Q 007670           43 TFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----A-  117 (594)
Q Consensus        43 ~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~----~-  117 (594)
                      .+..+|..+..+.++.+|++|+..|=.|.+|.-+.   .-+..-.++.++|.+..||.||+..+--++..++-+    . 
T Consensus       198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHhhccccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            45566777888899999999999999998876332   235677889999999999999988887777766311    0 


Q ss_pred             ----hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHH------------------------
Q 007670          118 ----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLE------------------------  168 (594)
Q Consensus       118 ----~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~------------------------  168 (594)
                          ....+.-+..++ .+-.-.|-.-||-+|--|-+...+.+.+-|.+ +|.|+-                        
T Consensus       275 e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~  353 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW  353 (823)
T ss_pred             hhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence                112555566666 22222222234444443333322222333333 444221                        


Q ss_pred             --------------------------HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007670          169 --------------------------RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAA  222 (594)
Q Consensus       169 --------------------------klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaA  222 (594)
                                                --|...-+.++.|++..++++|...   +.+....+..|.+.+.++.-.+|--|
T Consensus       354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~FA~~aldfLvDMfNDE~~~VRL~a  430 (823)
T KOG2259|consen  354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS---PGFAVRALDFLVDMFNDEIEVVRLKA  430 (823)
T ss_pred             cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHhccHHHHHHHHH
Confidence                                      1111222345666666666665433   12334466777777777788888888


Q ss_pred             HHHHHHHHHH
Q 007670          223 AEALWRLAVV  232 (594)
Q Consensus       223 aDaLg~IA~a  232 (594)
                      +-+|-.|+..
T Consensus       431 i~aL~~Is~~  440 (823)
T KOG2259|consen  431 IFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHH
Confidence            8888888775

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=93.68  E-value=0.54  Score=56.01  Aligned_cols=124  Identities=16%  Similarity=0.141  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCc---
Q 007670          141 AALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQD---  215 (594)
Q Consensus       141 Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seD---  215 (594)
                      =-.+|.-++-+.+.++ .|.++.|+|-|++.|..++.-+|-..+.+|--.-.-.+. -.-|+..++|.+...=.+.|   
T Consensus       887 yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~  966 (1030)
T KOG1967|consen  887 YLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNM  966 (1030)
T ss_pred             HHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcch
Confidence            3567888898888665 789999999999999999999988888888765533333 34888888888877655555   


Q ss_pred             HHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH----------HHHHHhhcC
Q 007670          216 WAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK----------MIEAWKQVP  264 (594)
Q Consensus       216 w~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK----------~i~lWk~i~  264 (594)
                      ..+|-.|+.+|+.|++..+ ..+.||....+++|+-+==||          +-+.|-.+-
T Consensus       967 ~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen  967 MVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred             hHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence            7899999999999999887 799999999999999887777          677776553

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=93.38  E-value=0.08  Score=40.22  Aligned_cols=27  Identities=11%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             hHHHHHHHHhhhcCCChhHHHHHHHHH
Q 007670           80 ITKIINSITRNFRDKNSALQATCISTV  106 (594)
Q Consensus        80 LpkIL~~IvrrLkD~Ds~VR~Ac~~AL  106 (594)
                      .+.|+..|.++|.|+++.||+|+++.+
T Consensus        16 ~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen   16 SSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            358999999999999999999999764

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.36  E-value=4.9  Score=50.57  Aligned_cols=106  Identities=20%  Similarity=0.243  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhcCCChhH--------------------HHHHHHHHHHHHhhc--CCCChHHHHHhhhhcCCCCCCcchH
Q 007670            4 ALKTSVNGLLNKLSDRDT--------------------YSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRK   61 (594)
Q Consensus         4 ~Lk~rvl~~L~KLsDrDT--------------------~r~A~~eLD~LA~~L--ppe~lp~fLs~L~e~~ss~kp~~RK   61 (594)
                      .||.+.|.||+.+-.-|+                    +.+==..||.+.+.+  .|+.++-+..||.+-+..+--.+||
T Consensus       831 alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRK  910 (1692)
T KOG1020|consen  831 ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRK  910 (1692)
T ss_pred             HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHH
Confidence            578888888887755441                    111112345555553  4666999999999999889999999


Q ss_pred             HHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670           62 ECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSL  109 (594)
Q Consensus        62 aaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L  109 (594)
                      .+|+.+--+|+..-=-+-.+.|..-+++|+.|-+..|.+-.++++--|
T Consensus       911 RvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  911 RVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            999999999999922256788999999999999999999999888654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.20  E-value=2.3  Score=50.33  Aligned_cols=34  Identities=24%  Similarity=0.192  Sum_probs=22.4

Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670          201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       201 ~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      ..+++-++.|+.+.|...=.+|..+||.-|...+
T Consensus       391 ~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~  424 (968)
T KOG1060|consen  391 SEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG  424 (968)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC
Confidence            3445566667777777666677777777776544

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=93.13  E-value=0.4  Score=51.90  Aligned_cols=207  Identities=10%  Similarity=0.125  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHhh--cCC-------CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch---HHHHHHHH
Q 007670           21 TYSQAAKELDSIAAT--VDP-------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI---TKIINSIT   88 (594)
Q Consensus        21 T~r~A~~eLD~LA~~--Lpp-------e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL---pkIL~~Iv   88 (594)
                      .+..|+-....+-.-  -||       -.+|.|+..+-+   ++.-...-+|--+|..+++|-.-.+++   ---+|..+
T Consensus        87 ~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~---~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi  163 (526)
T COG5064          87 QQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE---IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI  163 (526)
T ss_pred             HHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh---cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence            555666666654321  133       226777777643   223344457778888888887111111   23467788


Q ss_pred             hhhcCCChhHHHHHHHHHHhhchhhhcchhHH----hHHHHHHHHccCCChhH--HHHHHHHHHHHHhhcCCCc-chhHH
Q 007670           89 RNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNA--QVGAALCLAATIDAAQDPD-AGKLG  161 (594)
Q Consensus        89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~----~lkPL~eaL~~eq~k~v--Q~~Aa~ALaavvE~l~~~i-~~yL~  161 (594)
                      ..|.+++.-||+.++||||.+|-....--..+    .|.||+..|. .+..++  -..|---|-.++.+-.+++ -.-..
T Consensus       164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~-ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is  242 (526)
T COG5064         164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL-SSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS  242 (526)
T ss_pred             HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH-hccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence            89999999999999999999997764222222    7899998884 344433  3366667888888765554 45688


Q ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      +.+|-|.||+.+.+..+-.-+.=||+=+.-...+. ...++ .+++.|.+.|++++-.+..-|+-++|-|.+
T Consensus       243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT  314 (526)
T COG5064         243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT  314 (526)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence            88999999998887765333333444443222221 12222 256889999998876665556656555544

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.06  E-value=7.5  Score=39.54  Aligned_cols=204  Identities=19%  Similarity=0.173  Sum_probs=113.7

Q ss_pred             hhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhh
Q 007670           13 LNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF   91 (594)
Q Consensus        13 L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrL   91 (594)
                      +.|-.|.......++.|-.++.+=. ..+++++..|..-...++...+--+++++..+...- -.-|+|.+++-....+.
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~   87 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRI   87 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhc
Confidence            5555555566666666666666543 448888888876655555555556778888876555 33389998888755442


Q ss_pred             c----CCChh--HHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 007670           92 R----DKNSA--LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV  165 (594)
Q Consensus        92 k----D~Ds~--VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~  165 (594)
                      .    +.+..  +.=++..++..++....+ ....++++|..-|-++.+..+|.-|.-+|+.++++---++.....-|.+
T Consensus        88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~  166 (234)
T PF12530_consen   88 PSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK  166 (234)
T ss_pred             ccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            2    22222  333444455555555533 2223666666666356677788777778888886533222333333444


Q ss_pred             HHHHHhcCCchhhHHHHHHHHHHHH----hcCcCcC---CchHHHHHHHHhhhcCCc-------HHHHHHHHHH
Q 007670          166 RLERLLKSEVFKAKAAGLVVVGSVI----GSGAVDG---SGLKGLVSCLLGFLSSQD-------WAARKAAAEA  225 (594)
Q Consensus       166 RL~klL~s~~fkaK~alL~aIGSiA----~a~~~~~---pyf~~lm~~L~e~L~seD-------w~lRKaAaDa  225 (594)
                      +|    ..+   -++.++..+.++.    +.+-+..   .....++..+-+|....+       -.+|.+|.++
T Consensus       167 ~l----~~~---~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~a  233 (234)
T PF12530_consen  167 KL----SLD---YRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEA  233 (234)
T ss_pred             hc----CCc---cchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhc
Confidence            44    222   3445555444444    2222222   334446677767766554       3455555544

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.82  E-value=2  Score=48.38  Aligned_cols=230  Identities=18%  Similarity=0.143  Sum_probs=122.0

Q ss_pred             HHHHHHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhh-hcCCCCCCcchHHHHHHHHHHHhhh---c
Q 007670            5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCIL-STNSSDKPGVRKECIHVIATLSNSH---N   75 (594)
Q Consensus         5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~---lp~fLs~L~-e~~ss~kp~~RKaaI~lLGvlae~h---~   75 (594)
                      |+.-++...+|..|.+  -.+.|+.-|-.+|.-.|...   .+..+..|. .-....+..+-=++|.+|..+.+-.   -
T Consensus       256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~  335 (533)
T KOG2032|consen  256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD  335 (533)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence            4455555666666666  45566666666666544222   223333221 1111223566667777777765544   5


Q ss_pred             cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch---hHH----hHHHHHHHHccCCChhHHH-HHHHHHHH
Q 007670           76 LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVT----MLKLLSDALFTEQDTNAQV-GAALCLAA  147 (594)
Q Consensus        76 isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~---~~~----~lkPL~eaL~~eq~k~vQ~-~Aa~ALaa  147 (594)
                      +.+|+-.|-=.+...+.|-++.+|-|+-..+|+|+....++.   |..    -+.||+..|   +|++.+. .||.....
T Consensus       336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl---~d~~p~va~ACr~~~~  412 (533)
T KOG2032|consen  336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL---QDPNPYVARACRSELR  412 (533)
T ss_pred             hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee---CCCChHHHHHHHHHHH
Confidence            666666666666666667778888888888888888886543   221    244666555   4555553 56666555


Q ss_pred             HH-hhcC-CCcchhHHH----HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhh---hcCCcH-H
Q 007670          148 TI-DAAQ-DPDAGKLGR----MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGF---LSSQDW-A  217 (594)
Q Consensus       148 vv-E~l~-~~i~~yL~~----L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~---L~seDw-~  217 (594)
                      ++ +++. ++...|+++    .++|+.++.+.  + ++           +    ..+|++.++-.+...   +-+.-| .
T Consensus       413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~--~-c~-----------~----L~~i~~d~l~~~~t~~~~~f~sswe~  474 (533)
T KOG2032|consen  413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQ--W-CI-----------Q----LNHIHPDILMLLLTEDQHIFSSSWEQ  474 (533)
T ss_pred             hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHH--H-HH-----------H----HhhhCHHHHHHHHHhchhheecchHH
Confidence            53 2221 111233332    22333333211  0 00           0    113344433333221   224568 6


Q ss_pred             HHHHHHHHHHHHHHHcCCccchhhhH--HHHHHHhcchhH
Q 007670          218 ARKAAAEALWRLAVVEKDAVPEFKGK--CLKIFESKRFDK  255 (594)
Q Consensus       218 lRKaAaDaLg~IA~a~gd~f~py~~~--~m~sLEs~RfDK  255 (594)
                      +|.+|.-..+.+-..+-+..-+|+.-  +.+.|...++|-
T Consensus       475 vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp  514 (533)
T KOG2032|consen  475 VREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDP  514 (533)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCC
Confidence            67777766666666655555566533  337888888875

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=92.76  E-value=0.43  Score=43.38  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          158 GKLGRMEVRLERLLKSEV----FKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       158 ~yL~~L~~RL~klL~s~~----fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +++--++.++...+++..    +.-|...+-+|+-++...|.. ..+.+++|-||+..|..++  +|..|++++..+...
T Consensus         7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~   84 (107)
T smart00802        7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKT   84 (107)
T ss_pred             HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHh
Confidence            566678888888887665    334888899999999876654 5889999999999998776  999999999999998


Q ss_pred             cC-CccchhhhHHHHHH
Q 007670          233 EK-DAVPEFKGKCLKIF  248 (594)
Q Consensus       233 ~g-d~f~py~~~~m~sL  248 (594)
                      +. +.+.|..+.++.++
T Consensus        85 L~~~~l~~ll~~~~~~i  101 (107)
T smart00802       85 LKEEELGPLLDQIFAAI  101 (107)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            87 67888777777554

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.75  E-value=1  Score=51.23  Aligned_cols=181  Identities=12%  Similarity=0.115  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----------------ccccchH
Q 007670           21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----------------NLSPYIT   81 (594)
Q Consensus        21 T~r~A~~eLD~LA~~L-ppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----------------~isphLp   81 (594)
                      +..-|++.|-.++..+ -|..  +..|+..+........+..|..|++.+|.++..+                ....+++
T Consensus       410 ~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~  489 (618)
T PF01347_consen  410 TDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVP  489 (618)
T ss_dssp             -HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTH
T ss_pred             CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHH
Confidence            5555777787887777 5555  5555555533222345689999999999995544                2223566


Q ss_pred             HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC--CChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670           82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE--QDTNAQVGAALCLAATIDAAQDPDAGK  159 (594)
Q Consensus        82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e--q~k~vQ~~Aa~ALaavvE~l~~~i~~y  159 (594)
                      .+...+.......|...+-+++.|||.+...-       .++.|...+.++  ....++..|..||.++.+.       +
T Consensus       490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~-------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-------~  555 (618)
T PF01347_consen  490 YLEQELKEAVSRGDEEEKIVYLKALGNLGHPE-------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-------C  555 (618)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHhhccCCch-------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-------C
Confidence            66666666666788889999999999998644       333344444333  4566777888888877542       2


Q ss_pred             HHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC-CcHHHHHHHH
Q 007670          160 LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS-QDWAARKAAA  223 (594)
Q Consensus       160 L~~L~~RL~klL~s~--~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~s-eDw~lRKaAa  223 (594)
                      -.++.+-|+.++.+.  +..++.|++.+|=   ..    .|- ...+..|..+|.. .+-+++....
T Consensus       556 ~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm---~~----~P~-~~~l~~i~~~l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  556 PEKVREILLPIFMNTTEDPEVRIAAYLILM---RC----NPS-PSVLQRIAQSLWNEPSNQVASFVY  614 (618)
T ss_dssp             HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH---HT--------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred             cHHHHHHHHHHhcCCCCChhHHHHHHHHHH---hc----CCC-HHHHHHHHHHHhhCchHHHHHHHH
Confidence            334555666677554  5667766554332   11    133 3556677777754 4577666543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=92.68  E-value=2.7  Score=46.94  Aligned_cols=209  Identities=11%  Similarity=0.080  Sum_probs=118.6

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhc-c
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGA-S  116 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~-~  116 (594)
                      +..++..|....+.++.+.=|.-+|.+.++.++.  +....|+++..++..-.+. .++..-+=+.+++|.+-.+..+ +
T Consensus        28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~  107 (435)
T PF03378_consen   28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD  107 (435)
T ss_dssp             HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence            5555666654444667778888888888876665  3333344444444444444 4578899999999999998764 2


Q ss_pred             hh-----HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHHh--cCCchhhHHHHHHHHHH
Q 007670          117 AF-----VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLL--KSEVFKAKAAGLVVVGS  188 (594)
Q Consensus       117 ~~-----~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~klL--~s~~fkaK~alL~aIGS  188 (594)
                      +.     ...|-|.|..++.+.-....-=++.-|+-++|.-+ +++.+....|.+.|+.-.  ....  --++++-++.+
T Consensus       108 ~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g--niPalvrLL~a  185 (435)
T PF03378_consen  108 PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG--NIPALVRLLQA  185 (435)
T ss_dssp             HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT--THHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC--CcCcHHHHHHH
Confidence            32     23444444444432212222234556777888866 344333333333332211  1111  12567777777


Q ss_pred             HHhcCcC-c--CCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHH----HHHhcchhH
Q 007670          189 VIGSGAV-D--GSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLK----IFESKRFDK  255 (594)
Q Consensus       189 iA~a~~~-~--~pyf~~lm~~L~e~L~s--eDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~----sLEs~RfDK  255 (594)
                      .+..+.. +  .+++..++...+..+.+  .|-.    +.+.|.+|-...+ +.+.||...++.    =|.+.|=+|
T Consensus       186 ~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~----gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~k  258 (435)
T PF03378_consen  186 YIKKDPSFIVANNQLEPILGVFQKLIASKANDHY----GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEK  258 (435)
T ss_dssp             HHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH----HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred             HHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHH
Confidence            7755433 2  37889999999988876  3544    7899999999886 688888877664    344556666

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.51  E-value=2.1  Score=50.70  Aligned_cols=146  Identities=14%  Similarity=0.190  Sum_probs=79.7

Q ss_pred             HHHHHhhcC-CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchH-HHHHHHHhhhcCCChhHHHHHHHHH
Q 007670           29 LDSIAATVD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT-KIINSITRNFRDKNSALQATCISTV  106 (594)
Q Consensus        29 LD~LA~~Lp-pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLp-kIL~~IvrrLkD~Ds~VR~Ac~~AL  106 (594)
                      ++.|..++. .+.++-+++-+.....+-+.-.||=+..-+-+.++.+   |++- --++++.+-|+||++-+|..|..+|
T Consensus        40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lLavNti~kDl~d~N~~iR~~AlR~l  116 (757)
T COG5096          40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALLAVNTIQKDLQDPNEEIRGFALRTL  116 (757)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence            444444442 2236655555555544666677777666666666655   2221 2345677777777777777777777


Q ss_pred             HhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH--HHHHHHHhcCCchhhHHHHHH
Q 007670          107 SSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM--EVRLERLLKSEVFKAKAAGLV  184 (594)
Q Consensus       107 G~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L--~~RL~klL~s~~fkaK~alL~  184 (594)
                      +.+-..-.   ...++.|+-..+ ++.++.|-..||+|+.++-+--+    .+++.+  +.-+-.++...+..+++.++.
T Consensus       117 s~l~~~el---~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~  188 (757)
T COG5096         117 SLLRVKEL---LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK----DLYHELGLIDILKELVADSDPIVIANALA  188 (757)
T ss_pred             HhcChHHH---HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH----hhhhcccHHHHHHHHhhCCCchHHHHHHH
Confidence            76543321   111555555555 56666677777777777765322    233332  333334444445555554443


Q ss_pred             H
Q 007670          185 V  185 (594)
Q Consensus       185 a  185 (594)
                      +
T Consensus       189 s  189 (757)
T COG5096         189 S  189 (757)
T ss_pred             H
Confidence            3

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=92.22  E-value=2  Score=50.70  Aligned_cols=176  Identities=16%  Similarity=0.166  Sum_probs=101.5

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH--HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK--IINSITRNFRDKNSALQATCISTVSSLSPRVGASA-  117 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk--IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-  117 (594)
                      ++.++..+.    +.+...+..++++|..|+-..-+.++|-+  ++|.++..|+|++  .|..|...|-.||..=.-.. 
T Consensus       333 V~kL~kLl~----s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~  406 (708)
T PF05804_consen  333 VEKLLKLLP----SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM  406 (708)
T ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence            777666664    35567899999999999776644445544  5666667777654  66677777777776321111 


Q ss_pred             hH--HhHHHHHHHHccCCChhHHH---HHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670          118 FV--TMLKLLSDALFTEQDTNAQV---GAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG  191 (594)
Q Consensus       118 ~~--~~lkPL~eaL~~eq~k~vQ~---~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~  191 (594)
                      +.  ..++.|+..|+..++..++.   +.+.=|+.--.++.-.. ...|+.|+.|.++   ..+    +.++-+|.-|++
T Consensus       407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~---~~D----~lLlKlIRNiS~  479 (708)
T PF05804_consen  407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK---TRD----PLLLKLIRNISQ  479 (708)
T ss_pred             HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh---ccc----HHHHHHHHHHHh
Confidence            21  15666677776545555543   22222222222221111 1457778877654   222    456778888886


Q ss_pred             cCcCcCCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH
Q 007670          192 SGAVDGSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       192 a~~~~~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a  232 (594)
                      -.+....-|...|.-|...+.. +++.   ..+|+||.+|-.
T Consensus       480 h~~~~k~~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL  518 (708)
T PF05804_consen  480 HDGPLKELFVDFIGDLAKIVSSGDSEE---FVVECLGILANL  518 (708)
T ss_pred             cCchHHHHHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhc
Confidence            6544322233344444445554 3343   579999999975

>PF05536 Neurochondrin: Neurochondrin

Probab=92.12  E-value=21  Score=41.10  Aligned_cols=190  Identities=14%  Similarity=0.064  Sum_probs=125.7

Q ss_pred             HHHHHhhhhcCCCCCC-cchHHHHHHHHHHHhhh-----ccccchHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhh
Q 007670           42 PTFLSCILSTNSSDKP-GVRKECIHVIATLSNSH-----NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVG  114 (594)
Q Consensus        42 p~fLs~L~e~~ss~kp-~~RKaaI~lLGvlae~h-----~isphLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~  114 (594)
                      +.||.-|.-+...+.. +..-..-+++.+|+..|     .-.|.+-.-+|.++.-+..++. .+-.=|...|..++.+= 
T Consensus        52 ~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-  130 (543)
T PF05536_consen   52 FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-  130 (543)
T ss_pred             hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-
Confidence            3577777665444332 22223333344455555     5578899999999999988777 66666777777776322 


Q ss_pred             cch--hHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc----chhHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 007670          115 ASA--FVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD----AGKLGRMEVRLERLLKSEVFKAKAAGLVVV  186 (594)
Q Consensus       115 ~~~--~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i----~~yL~~L~~RL~klL~s~~fkaK~alL~aI  186 (594)
                      ++.  +..  .++.|++.+.+  .+..+.-|...|..++-..+...    ...+..++++|.+.+...+-..|-.++..+
T Consensus       131 ~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L  208 (543)
T PF05536_consen  131 EGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFL  208 (543)
T ss_pred             HhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            222  222  78899999853  44445566666666666654322    345778889999999877777788899999


Q ss_pred             HHHHhcCc---Cc----CCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHHHcC
Q 007670          187 GSVIGSGA---VD----GSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       187 GSiA~a~~---~~----~pyf~~lm~~L~e~L~se-Dw~lRKaAaDaLg~IA~a~g  234 (594)
                      +.+..-..   ..    ......+...|...|.+. .-.-|..|+...+.+..+.|
T Consensus       209 ~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G  264 (543)
T PF05536_consen  209 SAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG  264 (543)
T ss_pred             HHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            99874432   11    145566666777777653 45669999999999999887

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=91.84  E-value=0.64  Score=52.25  Aligned_cols=196  Identities=15%  Similarity=0.154  Sum_probs=134.2

Q ss_pred             cCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670           36 VDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSL  109 (594)
Q Consensus        36 Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L  109 (594)
                      ||.++   .+.|+.=.   ..+.+..+|-++++++||.+=-|   -..-+...-...|.+.|-|..-.+|.-+.+++|.+
T Consensus       384 lpn~~~T~~~~Fl~GC---~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI  460 (728)
T KOG4535|consen  384 LPNDRQTLCITFLLGC---NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI  460 (728)
T ss_pred             CCCcchhhhHHHHhcc---cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence            55533   55554433   35677899999999999987655   22334555566777888888888999999999999


Q ss_pred             chhhhcc-hh--HH---hHHHHHHHHc-----cC-CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHH-HHHHhc---C
Q 007670          110 SPRVGAS-AF--VT---MLKLLSDALF-----TE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR-LERLLK---S  173 (594)
Q Consensus       110 Ae~l~~~-~~--~~---~lkPL~eaL~-----~e-q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~R-L~klL~---s  173 (594)
                      .+.+... |.  +.   +.--+++++.     -+ .+-.|-..|.-+|-...+.+...+..-+..+++- +.+++.   .
T Consensus       461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~  540 (728)
T KOG4535|consen  461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLT  540 (728)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceec
Confidence            9999763 21  11   3333334333     11 2334777888899888888766555666666664 444443   2


Q ss_pred             C-chhhHHHHHHHHHHHHhcCcC-c--CCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcC
Q 007670          174 E-VFKAKAAGLVVVGSVIGSGAV-D--GSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       174 ~-~fkaK~alL~aIGSiA~a~~~-~--~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~g  234 (594)
                      + .|++|.-+-.+||-++.-..- +  .+....+.+.|...+.+ ..+-+|..|+-+|...+.-.+
T Consensus       541 ~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~  606 (728)
T KOG4535|consen  541 EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ  606 (728)
T ss_pred             ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence            3 778898888999998865543 2  26666677777777664 678899999999888777554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.81  E-value=0.43  Score=52.03  Aligned_cols=128  Identities=16%  Similarity=0.269  Sum_probs=80.5

Q ss_pred             CChhHHHHHH-HHHHHHHhhcCCCChHHHHHhhhhc------CCCCCCcchHHHHHHHHHHHhhh--------ccccc--
Q 007670           17 SDRDTYSQAA-KELDSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNSH--------NLSPY--   79 (594)
Q Consensus        17 sDrDT~r~A~-~eLD~LA~~Lppe~lp~fLs~L~e~------~ss~kp~~RKaaI~lLGvlae~h--------~isph--   79 (594)
                      +|-+|.|.|+ .-|..++........+.++.++...      ..+.+|..+-.||.++|.++.-.        -+.++  
T Consensus       222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~  301 (370)
T PF08506_consen  222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD  301 (370)
T ss_dssp             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred             cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence            5666666555 5555688887765566666665543      34677888999999999995544        11122  


Q ss_pred             hHHHH-HHHHhhhc---CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHH
Q 007670           80 ITKII-NSITRNFR---DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCL  145 (594)
Q Consensus        80 LpkIL-~~IvrrLk---D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~AL  145 (594)
                      +..++ .+|.--|+   ...+.+|..|++.+..+..++.++-...+++.|+..| +.++..|..=||.|+
T Consensus       302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L-~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHL-QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence            22222 23334455   3446799999999999999996555556888888888 677777887777775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.76  E-value=6.7  Score=46.60  Aligned_cols=206  Identities=14%  Similarity=0.128  Sum_probs=123.6

Q ss_pred             cCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670           36 VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV  113 (594)
Q Consensus        36 Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      |+.++  +--+.++|..-+.|.+-++--.|+-+||.+|..-    ..+.+.|-|.+.|+-+++-||+=|+-++.++-...
T Consensus        98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~E----mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~  173 (866)
T KOG1062|consen   98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE----MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV  173 (866)
T ss_pred             hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH----HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence            35555  5556678877788888777777777777664332    23556677778888899999987665555444333


Q ss_pred             hcchh-HH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--------------------------------Ccchh
Q 007670          114 GASAF-VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD--------------------------------PDAGK  159 (594)
Q Consensus       114 ~~~~~-~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~--------------------------------~i~~y  159 (594)
                         |. .. |+.+.-..| .+++..|-+++..=+-.+|+.-++                                ...|+
T Consensus       174 ---P~l~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPF  249 (866)
T KOG1062|consen  174 ---PDLVEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPF  249 (866)
T ss_pred             ---chHHHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence               32 22 555555555 667666665433333333333111                                11345


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-------CcCc--------------CCchHHHHHHHHhhhcCCcHHH
Q 007670          160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-------GAVD--------------GSGLKGLVSCLLGFLSSQDWAA  218 (594)
Q Consensus       160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-------~~~~--------------~pyf~~lm~~L~e~L~seDw~l  218 (594)
                      |+--+=||+++|...+-.+....-..++=+|.=       |.+.              .+-..-.+.+|..||.+.|-.+
T Consensus       250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Ni  329 (866)
T KOG1062|consen  250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNI  329 (866)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccce
Confidence            555555666666666666655555555555521       1110              1222334677788888888888


Q ss_pred             HHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670          219 RKAAAEALWRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       219 RKaAaDaLg~IA~a~gd~f~py~~~~m~sLE  249 (594)
                      |=.|+++|.++.......++.+..-++..|+
T Consensus       330 rYvaLn~L~r~V~~d~~avqrHr~tIleCL~  360 (866)
T KOG1062|consen  330 RYVALNMLLRVVQQDPTAVQRHRSTILECLK  360 (866)
T ss_pred             eeeehhhHHhhhcCCcHHHHHHHHHHHHHhc
Confidence            8888888888877766677777655555555

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.46  E-value=2.6  Score=40.65  Aligned_cols=146  Identities=10%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhhcCCC-hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--Ccc
Q 007670           81 TKIINSITRNFRDKN-SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD--PDA  157 (594)
Q Consensus        81 pkIL~~IvrrLkD~D-s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~--~i~  157 (594)
                      |.++..+.+-|+-.. ..+|..+...+|.|..-=.   .  ..+-....+   .+...+.....+-+...-..+.  ...
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP---~--~~k~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~e   80 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDP---Y--KHKSIQKSL---DSKSSENSNDESTDISLPMMGISPSSE   80 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc---H--HHhcccccC---CccccccccccchhhHHhhccCCCchH
Confidence            677777777777654 6899999999999986431   0  111000000   0111111122222222222221  234


Q ss_pred             hhHHH-HHHHHHHHhcCCchhh-HHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670          158 GKLGR-MEVRLERLLKSEVFKA-KAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       158 ~yL~~-L~~RL~klL~s~~fka-K~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      +|.+. .+.-|.+.|+.++..- +.+++.||-.|.+..+.- .||++.+||.+...+..-+-.+|..-.--|+.|..+++
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk  160 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK  160 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence            56555 7778899998874442 446888888888665443 59999999999999984333888888888888877653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=91.45  E-value=2  Score=48.97  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=72.1

Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC--------chhhHHHHHHHHHHHHhc
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--------VFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~--------~fkaK~alL~aIGSiA~a  192 (594)
                      |++=+.+++.+ .+..--..|..+|       ..+  +-|+.|+|+|+.++...        ++..=.-++-.+.|+..=
T Consensus       208 Yy~~It~a~~g-~~~~~r~eAL~sL-------~TD--sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N  277 (576)
T KOG2549|consen  208 YYKEITEACTG-SDEPLRQEALQSL-------ETD--SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN  277 (576)
T ss_pred             HHHHHHHHHhc-CCHHHHHHHHHhh-------ccC--ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence            78888888865 3333222333333       222  35666666666666322        222222344455555544


Q ss_pred             CcCcC-CchHHHHHHHHhhhcC----------CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670          193 GAVDG-SGLKGLVSCLLGFLSS----------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK  246 (594)
Q Consensus       193 ~~~~~-pyf~~lm~~L~e~L~s----------eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~  246 (594)
                      -..|. ||+-.+||++.-|+.+          +.|++|..|++.|..|....++........+.+
T Consensus       278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~  342 (576)
T KOG2549|consen  278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITR  342 (576)
T ss_pred             CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            55565 9999999999999752          469999999999999998777543333334443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=91.26  E-value=18  Score=43.21  Aligned_cols=145  Identities=16%  Similarity=0.097  Sum_probs=100.3

Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChh
Q 007670           18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA   97 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~   97 (594)
                      |-.-.|+=--.|...|+.=|. ..--.++.+...+++++|..|--||+-++.+=..    ..++.+++.|.+-|.|+.+-
T Consensus        68 d~ElKrL~ylYl~~yak~~P~-~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ay  142 (757)
T COG5096          68 DVELKRLLYLYLERYAKLKPE-LALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAY  142 (757)
T ss_pred             CHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHH
Confidence            333555666666677765553 3333367777778999999999999999887433    35688899999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcchhHHh-HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670           98 LQATCISTVSSLSPRVGASAFVTM-LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL  171 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~~~~~~-lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL  171 (594)
                      ||+.|+.|++.+-..--+-.. .. +--+...|..+.+|.|-..|..+|..+.+.   ...+|+..++.++-.+.
T Consensus       143 VRk~Aalav~kly~ld~~l~~-~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~l~  213 (757)
T COG5096         143 VRKTAALAVAKLYRLDKDLYH-ELGLIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQLD  213 (757)
T ss_pred             HHHHHHHHHHHHHhcCHhhhh-cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhhcc
Confidence            999999999987643311110 11 222334444688999988877777766654   34678877777666544

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.20  E-value=9.8  Score=45.78  Aligned_cols=246  Identities=16%  Similarity=0.188  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCC----CCCCcch-HHHHHHHHHHHhhh--ccccchHHHHHHHHh-hh
Q 007670           21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNS----SDKPGVR-KECIHVIATLSNSH--NLSPYITKIINSITR-NF   91 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~s----s~kp~~R-KaaI~lLGvlae~h--~isphLpkIL~~Ivr-rL   91 (594)
                      .+|-+..++-.-.=++-.+. +..+..-|.+...    +|+.-.| .+|+-.|-.+++..  --.+.+++++..+-+ .+
T Consensus       439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~  518 (982)
T KOG2022|consen  439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL  518 (982)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence            44555444433332322344 5555555544433    3343334 45555666566655  777888888876543 34


Q ss_pred             cCCChhHHHHHHHHHHhhchhhhcchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670           92 RDKNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER  169 (594)
Q Consensus        92 kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k  169 (594)
                      .-+.+..-+.|.+++|.++.|+.+.|+..  .++-||.+| +..+--+|  |..-|.+++|...+...||...++.-...
T Consensus       519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~L-h~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e  595 (982)
T KOG2022|consen  519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGL-HNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYE  595 (982)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHh-cCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence            55688889999999999999998888654  777777887 32333334  33349999999999999999888887777


Q ss_pred             HhcCCchh--hHHHHHHHHHHHHhcCc--CcCCchHHHHHHHHhh----hcC--CcHHHHHHH---HHHHHHHHHHc-C-
Q 007670          170 LLKSEVFK--AKAAGLVVVGSVIGSGA--VDGSGLKGLVSCLLGF----LSS--QDWAARKAA---AEALWRLAVVE-K-  234 (594)
Q Consensus       170 lL~s~~fk--aK~alL~aIGSiA~a~~--~~~pyf~~lm~~L~e~----L~s--eDw~lRKaA---aDaLg~IA~a~-g-  234 (594)
                      .++....+  .+..++.+||=+.+.-.  +-.-|+..++..+.+-    |..  ++.+-|-..   ..++..+++.. + 
T Consensus       596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~  675 (982)
T KOG2022|consen  596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK  675 (982)
T ss_pred             HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            77655333  35568888887775532  2345655555444333    322  233333222   23455555531 1 


Q ss_pred             ----Cccchhhh-------HHHHHHH--hcchhHHHHHHhhcCCCCCC
Q 007670          235 ----DAVPEFKG-------KCLKIFE--SKRFDKMIEAWKQVPDLSEE  269 (594)
Q Consensus       235 ----d~f~py~~-------~~m~sLE--s~RfDK~i~lWk~i~~v~~~  269 (594)
                          +.=+|...       +.+.++.  =+=|+|....|-...+|-|.
T Consensus       676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~  723 (982)
T KOG2022|consen  676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEA  723 (982)
T ss_pred             CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence                11111111       2333332  35577877788877766543

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=91.06  E-value=1.2  Score=54.67  Aligned_cols=167  Identities=14%  Similarity=0.076  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHhhcCCC---ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHH----hhh-ccccchHHHHHHHHhhhc
Q 007670           21 TYSQAAKELDSIAATVDPT---LLPTFLSCILSTNSSDKPGVRKECIHVIATLS----NSH-NLSPYITKIINSITRNFR   92 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe---~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvla----e~h-~isphLpkIL~~IvrrLk   92 (594)
                      +.+-|-..|..|++.+-++   .+|.|-+||....+..-+.. -+-+..|++.=    ..| .+.| +-..+|.+..-++
T Consensus       749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~  826 (1549)
T KOG0392|consen  749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR  826 (1549)
T ss_pred             HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence            4666777788888887543   26666566544322211111 25566666552    222 4445 5556677777888


Q ss_pred             CCChhHHHHHHHHHHhhchhhhcchhHH---hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670           93 DKNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER  169 (594)
Q Consensus        93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~---~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k  169 (594)
                      -+++.||-||..++|-++.-.+......   -+.|+++++-   +-+-|.+|-..+..+.+.+.-.+.+|.+.|.+-|+.
T Consensus       827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~---~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr  903 (1549)
T KOG0392|consen  827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD---KFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLR  903 (1549)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh---hHhhhhhHHHHHHHHHHhhcccccccceeehhhhhc
Confidence            8999999999999999998887654333   5667766662   333444555555666666666778999999999999


Q ss_pred             HhcCCchhhHHHHHHHHHHHHhc
Q 007670          170 LLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       170 lL~s~~fkaK~alL~aIGSiA~a  192 (594)
                      .+..+.=-++.++-.+.+.++-.
T Consensus       904 ~msd~~d~vR~aat~~fa~lip~  926 (1549)
T KOG0392|consen  904 RMSDQIDSVREAATKVFAKLIPL  926 (1549)
T ss_pred             ccccchHHHHHHHHHHHHHHhcc
Confidence            99877666788888888888754

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.04  E-value=18  Score=43.73  Aligned_cols=257  Identities=15%  Similarity=0.181  Sum_probs=150.7

Q ss_pred             HHHHHHHHhh--cCC--ChhHHHHHHHHHHHHHhhc--CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--cc
Q 007670            5 LKTSVNGLLN--KLS--DRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL   76 (594)
Q Consensus         5 Lk~rvl~~L~--KLs--DrDT~r~A~~eLD~LA~~L--ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~i   76 (594)
                      |-.|+++...  |++  .-++.+.+.+.+..++.-|  .|-.+++.|+.|.+.+..++  .=.+++.-+-.+|+.|  -+
T Consensus       505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L  582 (982)
T KOG2022|consen  505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESL  582 (982)
T ss_pred             HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhC
Confidence            3345554443  334  7789999999999999888  45558888888877765333  4556777799999999  89


Q ss_pred             ccchHHHHHHHHhhhcCCC--hhHHHHHHHHHHhhchhhhcchh-H-----HhHHHHHHHHcc-----CCChh------H
Q 007670           77 SPYITKIINSITRNFRDKN--SALQATCISTVSSLSPRVGASAF-V-----TMLKLLSDALFT-----EQDTN------A  137 (594)
Q Consensus        77 sphLpkIL~~IvrrLkD~D--s~VR~Ac~~ALG~LAe~l~~~~~-~-----~~lkPL~eaL~~-----eq~k~------v  137 (594)
                      .||+..+++++...+.-..  .++|-....++|-+-..+-  |+ .     .++.|++..|-.     -+++.      .
T Consensus       583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~--pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~  660 (982)
T KOG2022|consen  583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK--PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAF  660 (982)
T ss_pred             chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc--HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            9999999999988886543  3578888888888777662  31 1     278888877731     11222      3


Q ss_pred             HHHHHHHHHHHHhhcCC-----------------CcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC-cCcC-C
Q 007670          138 QVGAALCLAATIDAAQD-----------------PDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDG-S  198 (594)
Q Consensus       138 Q~~Aa~ALaavvE~l~~-----------------~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~-~~~~-p  198 (594)
                      |..+..+|..-..+-.+                 +++..+.++|+-+-+.+..-  ---..+++++.++...| .... +
T Consensus       661 ~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~--~~~s~vve~~C~i~~~~v~~~~~s  738 (982)
T KOG2022|consen  661 QLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMW--LGLSDVVEASCIIMVKGVRSLLTS  738 (982)
T ss_pred             HHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHhcccccccc
Confidence            44555555544333211                 22345566777666666411  01234666666666444 1112 3


Q ss_pred             chHHHHHHHHhhhcCCcHHHHH-HHHHHHHHHH-HH-cC-C--------ccchhhhHHHHHHHhcchhH-----------
Q 007670          199 GLKGLVSCLLGFLSSQDWAARK-AAAEALWRLA-VV-EK-D--------AVPEFKGKCLKIFESKRFDK-----------  255 (594)
Q Consensus       199 yf~~lm~~L~e~L~seDw~lRK-aAaDaLg~IA-~a-~g-d--------~f~py~~~~m~sLEs~RfDK-----------  255 (594)
                      +....||.+..|+..  ...+- +++..+++.+ .+ .+ +        .|....+..+.++|.--|-.           
T Consensus       739 F~~p~l~~l~~Fi~r--~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~  816 (982)
T KOG2022|consen  739 FPEPMLPSLCPFIVR--FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGF  816 (982)
T ss_pred             chhhhHHHHHHHHHH--hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Confidence            214455555555433  22221 2233333333 22 22 2        23333455555666544433           


Q ss_pred             HHHHHhhcCCCCCC
Q 007670          256 MIEAWKQVPDLSEE  269 (594)
Q Consensus       256 ~i~lWk~i~~v~~~  269 (594)
                      -=+.||.+|+..++
T Consensus       817 v~~ilkk~P~~~~~  830 (982)
T KOG2022|consen  817 VRQILKKIPKFLEP  830 (982)
T ss_pred             HHHHHHhCcCcccc
Confidence            44679999988654

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=90.65  E-value=29  Score=37.79  Aligned_cols=106  Identities=19%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007670          158 GKLGRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-  234 (594)
Q Consensus       158 ~yL~~L~~RL~klL~s-~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-  234 (594)
                      .|...+++||.+++.. ..++.-+.+=+++-.+.+..... .+|+...+...+.|..+.|-.+|.+|..+...+..+.. 
T Consensus       228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~  307 (372)
T PF12231_consen  228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP  307 (372)
T ss_pred             cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4677899999999998 56554444444444444222122 39999999999999999999999999999999998754 


Q ss_pred             -Cccchh-----hhHHHHHHHhcchhH-HHHHHhhc
Q 007670          235 -DAVPEF-----KGKCLKIFESKRFDK-MIEAWKQV  263 (594)
Q Consensus       235 -d~f~py-----~~~~m~sLEs~RfDK-~i~lWk~i  263 (594)
                       +...+-     ..+++..++..+-+| ..++|..+
T Consensus       308 ~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~l  343 (372)
T PF12231_consen  308 NELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYL  343 (372)
T ss_pred             CccccHHHHHHHHHHHHHHhCccccccccHHHHHHH
Confidence             222222     244445566666665 44666553

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.45  E-value=13  Score=43.04  Aligned_cols=91  Identities=11%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcC
Q 007670           17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD   93 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD   93 (594)
                      ++.-+-++|++-+-....+.|.-+   |..+|+++.    .++..+|+.||+.|-.+|...  ..|+++|.-++++.|+-
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE----Ded~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~t  107 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE----DEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQT  107 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-----SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhc
Confidence            566689999999999999887433   666666665    467889999999999888764  34899999999999999


Q ss_pred             CChhHHHHHHHHHHhhchhh
Q 007670           94 KNSALQATCISTVSSLSPRV  113 (594)
Q Consensus        94 ~Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      -|+..+.++-.+|-.|-..-
T Consensus       108 dd~~E~~~v~~sL~~ll~~d  127 (556)
T PF05918_consen  108 DDPVELDAVKNSLMSLLKQD  127 (556)
T ss_dssp             --HHHHHHHHHHHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHHHHhcC
Confidence            99888888888885554433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=90.41  E-value=13  Score=44.91  Aligned_cols=231  Identities=16%  Similarity=0.113  Sum_probs=134.8

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCC--CcchHHHHHHHHHHHhhh-------c
Q 007670            5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDK--PGVRKECIHVIATLSNSH-------N   75 (594)
Q Consensus         5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~k--p~~RKaaI~lLGvlae~h-------~   75 (594)
                      .|+.++.+|.-.-+.|+.--+.+|.-..-..+++.    |-..|.+...+..  -+.|..++..|-...+.|       +
T Consensus         2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~----f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f   77 (1005)
T KOG2274|consen    2 VKQAIIELLSGSLSADQNVRSQAETQLKQLELTEG----FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF   77 (1005)
T ss_pred             cHHHHHHHHHhhcCCChhHHHHHHHHHhccccchH----HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence            57889999988877775555555543322222332    4444444433332  255777777676666666       5


Q ss_pred             cccc-----hHH-HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007670           76 LSPY-----ITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATI  149 (594)
Q Consensus        76 isph-----Lpk-IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavv  149 (594)
                      ..|.     ..+ |-..+.+.|-|+++-+|.+...++..+|.+--=....-++.-++..| ...|.+.--+|..||+-+.
T Consensus        78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l-~~~n~n~i~~am~vL~el~  156 (1005)
T KOG2274|consen   78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLL-SSGNENSIHGAMRVLAELS  156 (1005)
T ss_pred             cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHH-hccchhhhhhHHHHHHHHH
Confidence            5554     222 33355566779999999999999999998873222334666666666 4456666669999999988


Q ss_pred             hhcCCC----cchhHHHHHHHHHHHhcCCchh--hHHHHHHHHHHHH---hc--------CcCc-CCchHHHHHHHHhhh
Q 007670          150 DAAQDP----DAGKLGRMEVRLERLLKSEVFK--AKAAGLVVVGSVI---GS--------GAVD-GSGLKGLVSCLLGFL  211 (594)
Q Consensus       150 E~l~~~----i~~yL~~L~~RL~klL~s~~fk--aK~alL~aIGSiA---~a--------~~~~-~pyf~~lm~~L~e~L  211 (594)
                      +.+...    +.+....=|.|++++....+..  ++.+-+-...+++   ..        .+.| .+.+.+.|..+...+
T Consensus       157 ~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l  236 (1005)
T KOG2274|consen  157 DEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL  236 (1005)
T ss_pred             HHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            776322    2233233455677777655443  3333223333322   11        1222 255555555555555


Q ss_pred             cC---CcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670          212 SS---QDWAARKAAAEALWRLAVVEKDAVPEF  240 (594)
Q Consensus       212 ~s---eDw~lRKaAaDaLg~IA~a~gd~f~py  240 (594)
                      .-   .+|.+|..-+-++..+..-......||
T Consensus       237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~  268 (1005)
T KOG2274|consen  237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPF  268 (1005)
T ss_pred             cccccchHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence            42   579998887777776654433333333

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=90.33  E-value=0.92  Score=45.09  Aligned_cols=89  Identities=19%  Similarity=0.101  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH---HHHc
Q 007670          158 GKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL---AVVE  233 (594)
Q Consensus       158 ~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I---A~a~  233 (594)
                      +||+...+=|.+. ++| .|-|.......+-.  .++.-..|.+++++..|...|.+.|-++..+++.+|..|   ...+
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            4555544444333 234 66677776666654  222224699999999999999999999999999999999   5568


Q ss_pred             CCccchhhhHHHHHHH
Q 007670          234 KDAVPEFKGKCLKIFE  249 (594)
Q Consensus       234 gd~f~py~~~~m~sLE  249 (594)
                      |+.+-||...++-+|+
T Consensus       115 G~aLvPyyrqLLp~ln  130 (183)
T PF10274_consen  115 GEALVPYYRQLLPVLN  130 (183)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            8999999988887776

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.31  E-value=6  Score=46.59  Aligned_cols=194  Identities=19%  Similarity=0.192  Sum_probs=119.3

Q ss_pred             HHHHHhhc---CCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHH
Q 007670           29 LDSIAATV---DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQAT  101 (594)
Q Consensus        29 LD~LA~~L---ppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~A  101 (594)
                      |-.+...|   |++.  +..++..|.-...+.+-.+|.-+..+|+++...-  +=-.-..++.-.+..||.|-.+.||--
T Consensus        66 la~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiq  145 (892)
T KOG2025|consen   66 LARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQ  145 (892)
T ss_pred             HHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHH
Confidence            33444444   4444  7888888888888888899999999999997744  223346788888999999999999999


Q ss_pred             HHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHH-------HHHhhcCCCcch----hHHHHHHH----
Q 007670          102 CISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLA-------ATIDAAQDPDAG----KLGRMEVR----  166 (594)
Q Consensus       102 c~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALa-------avvE~l~~~i~~----yL~~L~~R----  166 (594)
                      |+.+|..|=+.-.++.. -+..-+.+.+.+++++.|-.+|..|+.       .++|.+.|....    ....++|+    
T Consensus       146 Av~aLsrlQ~d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r  224 (892)
T KOG2025|consen  146 AVLALSRLQGDPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLR  224 (892)
T ss_pred             HHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhh
Confidence            99999998753322211 134444444446788888888888775       344444333210    11223332    


Q ss_pred             ----------HHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHH
Q 007670          167 ----------LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRL  229 (594)
Q Consensus       167 ----------L~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-seDw~lRKaAaDaLg~I  229 (594)
                                |-.-|+...+-+|.|+..+|.+     +. .-+.+.=+.-+.+.|. +..-.++--|+++|-.+
T Consensus       225 ~lsi~krv~LlewgLnDRe~sVk~A~~d~il~-----~W-l~~~dgni~ElL~~ldvsnss~vavk~lealf~~  292 (892)
T KOG2025|consen  225 SLSIDKRVLLLEWGLNDREFSVKGALVDAILS-----GW-LRFSDGNILELLERLDVSNSSEVAVKALEALFSG  292 (892)
T ss_pred             hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-----HH-hhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence                      2333456677778777776664     01 0111111222233332 33346666778887774

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.29  E-value=16  Score=44.98  Aligned_cols=96  Identities=13%  Similarity=0.234  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhhchhhhcc---hhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhc
Q 007670           98 LQATCISTVSSLSPRVGAS---AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLK  172 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~---~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~  172 (594)
                      =|..|++.|+.+.......   ++.. ++.-.++.|-.++.+=.-.=.|.||-++-|+-+..- ...=..--++|..+|.
T Consensus       573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls  652 (1387)
T KOG1517|consen  573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS  652 (1387)
T ss_pred             HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence            4667777777777665321   1111 555555555322345555678888888888644331 1111224467999999


Q ss_pred             CCchhhHHHHHHHHHHHHhcC
Q 007670          173 SEVFKAKAAGLVVVGSVIGSG  193 (594)
Q Consensus       173 s~~fkaK~alL~aIGSiA~a~  193 (594)
                      .+...+++|++=|+|++...+
T Consensus       653 D~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  653 DPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             CccHHHHHHHHHHHHHHhccc
Confidence            999999999999999998754

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.26  E-value=6.4  Score=46.88  Aligned_cols=208  Identities=17%  Similarity=0.101  Sum_probs=136.5

Q ss_pred             cchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhh-----cCCChh-HHHHHHHHHHhhchhhhc----------c--h
Q 007670           58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNF-----RDKNSA-LQATCISTVSSLSPRVGA----------S--A  117 (594)
Q Consensus        58 ~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrL-----kD~Ds~-VR~Ac~~ALG~LAe~l~~----------~--~  117 (594)
                      ..|--+=.++=.+-..|  .+.|.+-+|+-......     +|-+.. ..+|...|+|.-+.++.+          .  |
T Consensus       412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp  491 (978)
T KOG1993|consen  412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP  491 (978)
T ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence            34666666666676666  77777777775555554     343343 466777777765555432          0  0


Q ss_pred             ---------------------------hHHhHHHHH-HHH---ccCC-ChhHHHHHHHHHHHHHhhc---CCCcchhHHH
Q 007670          118 ---------------------------FVTMLKLLS-DAL---FTEQ-DTNAQVGAALCLAATIDAA---QDPDAGKLGR  162 (594)
Q Consensus       118 ---------------------------~~~~lkPL~-eaL---~~eq-~k~vQ~~Aa~ALaavvE~l---~~~i~~yL~~  162 (594)
                                                 ...=++|++ +++   +.++ |..|-.+++.+|-.+||-.   ++...||++.
T Consensus       492 El~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~len  571 (978)
T KOG1993|consen  492 ELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLEN  571 (978)
T ss_pred             HhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHH
Confidence                                       001133332 222   2455 8889999999999999975   3555889999


Q ss_pred             HHHHHHHHhcCC-chhhHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHcC---C
Q 007670          163 MEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLS--SQDWAARKAAAEALWRLAVVEK---D  235 (594)
Q Consensus       163 L~~RL~klL~s~-~fkaK~alL~aIGSiA~-a~~~~~pyf~~lm~~L~e~L~--seDw~lRKaAaDaLg~IA~a~g---d  235 (594)
                      +-.-++++|..- .+.+|..+|+.++.++. ++.-..||...+++.|...+.  .++--+|-+-+-+|--+..+.|   .
T Consensus       572 lf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~  651 (978)
T KOG1993|consen  572 LFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF  651 (978)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc
Confidence            888888888655 77899999999999884 443334888777777766654  3456678888888888888888   3


Q ss_pred             ccchhhhHHHH-HHHhcchhH------HHHHHhhcCC
Q 007670          236 AVPEFKGKCLK-IFESKRFDK------MIEAWKQVPD  265 (594)
Q Consensus       236 ~f~py~~~~m~-sLEs~RfDK------~i~lWk~i~~  265 (594)
                      .+-||.=++++ +-.=..-++      ++++|..+=.
T Consensus       652 ~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~  688 (978)
T KOG1993|consen  652 EFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLM  688 (978)
T ss_pred             cchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHh
Confidence            66666555553 222112222      9999987543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=90.22  E-value=13  Score=41.07  Aligned_cols=143  Identities=15%  Similarity=0.179  Sum_probs=82.8

Q ss_pred             hHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc
Q 007670          121 MLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD  196 (594)
Q Consensus       121 ~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~  196 (594)
                      +..+++..|+.   -.+..-|..-..=|..+++.+++.. ..+...|+.++.+++++++|++-..++.....-.-. +..
T Consensus       252 l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li  330 (409)
T PF01603_consen  252 LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLI  330 (409)
T ss_dssp             GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHH
T ss_pred             hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHH
Confidence            45555555542   2344445555555666666655433 567788999999999999999866655432211000 011


Q ss_pred             CCchHHHHHHHHhhhcC---CcH--HHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcch---hHHHHHHhhcCC
Q 007670          197 GSGLKGLVSCLLGFLSS---QDW--AARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRF---DKMIEAWKQVPD  265 (594)
Q Consensus       197 ~pyf~~lm~~L~e~L~s---eDw--~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~Rf---DK~i~lWk~i~~  265 (594)
                      ..+-..++|.|.+.|..   .-|  .+|+.|..+|..+..+-.+.|...... ++..+..+-   .+--+-|+.|..
T Consensus       331 ~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~-~~~~~~~~~~~~~~r~~~W~~i~~  406 (409)
T PF01603_consen  331 SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQK-YKEKEQKEKAREKKRKKKWKKIEE  406 (409)
T ss_dssp             HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHH-HHHHHHHHHHSSHHHHHHHTT-S-
T ss_pred             HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            25556677777777653   344  579999999999988766666542222 222222222   127888998874

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.13  E-value=14  Score=43.70  Aligned_cols=177  Identities=19%  Similarity=0.220  Sum_probs=120.1

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH-HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV  119 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk-IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~  119 (594)
                      ||.++.|..    ..+-..+|=+.+-+..-+.++   |.+.. -++++++-..|+++.+|.-|..++|++--.-+   ..
T Consensus        51 F~dvvk~~~----T~dlelKKlvyLYl~nYa~~~---P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i---~e  120 (734)
T KOG1061|consen   51 FPDVVKCMQ----TRDLELKKLVYLYLMNYAKGK---PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKI---TE  120 (734)
T ss_pred             hHHHHhhcc----cCCchHHHHHHHHHHHhhccC---chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHH---HH
Confidence            555555554    456788998888888777776   22222 36789999999999999998888887643321   11


Q ss_pred             HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cC-
Q 007670          120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DG-  197 (594)
Q Consensus       120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~-  197 (594)
                      -++.||...+ .+.++.++..|+.|.+++-.--.+  ...-..+++-|-.++...+..+-+.++.++..|...... .. 
T Consensus       121 y~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  121 YLCDPLLKCL-KDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHHhc-cCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence            2889999999 788999999999999998763222  222234677777888777777877778888777744321 21 


Q ss_pred             CchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcC
Q 007670          198 SGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       198 pyf~~lm~~L~e~L~-seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      -.-..++..+.+.|. .++|.    -+..|..++....
T Consensus       198 ~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p  231 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECTEWG----QIFILDCLAEYVP  231 (734)
T ss_pred             cccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCC
Confidence            111234444444444 47898    4777777777654

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.89  E-value=1.2  Score=52.38  Aligned_cols=84  Identities=13%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             CCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC
Q 007670           55 DKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ  133 (594)
Q Consensus        55 ~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq  133 (594)
                      .+--+||+|+.+||.++--      =|.-+|.++..|.+ -++.||-.++.|||..|.-......+.+|.||+.    +.
T Consensus       567 ~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~----D~  636 (929)
T KOG2062|consen  567 VNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS----DP  636 (929)
T ss_pred             cchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc----Ch
Confidence            4445777777777765311      12334445555554 3466777777777777766643333335555443    44


Q ss_pred             ChhHHHHHHHHHHHH
Q 007670          134 DTNAQVGAALCLAAT  148 (594)
Q Consensus       134 ~k~vQ~~Aa~ALaav  148 (594)
                      .--|-.||+.|++-+
T Consensus       637 ~~fVRQgAlIa~amI  651 (929)
T KOG2062|consen  637 VDFVRQGALIALAMI  651 (929)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666677776665

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.84  E-value=7.3  Score=38.27  Aligned_cols=135  Identities=14%  Similarity=0.164  Sum_probs=90.0

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      +..|+..|.+..-+++..+|..|+.+++.+.+..++.|  ...+|+++-...||++.||+.|...+..+.+...  .+  
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~--s~--   79 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE--SL--   79 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH--HH--
Confidence            56677888777778899999999999999999888855  5689999999999999999999998888888772  11  


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                      +-..+.+.        ++  .|+.+..-+...... ........+.++..+++ ++-+-+...+..|-.....
T Consensus        80 v~~~~~~g--------i~--~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~  141 (187)
T PF12830_consen   80 VESRYSEG--------IR--LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDF  141 (187)
T ss_pred             HHHHHHHH--------HH--HHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHh
Confidence            11112222        22  344444443322111 01124556777888887 3334555666666655533

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=89.61  E-value=22  Score=37.73  Aligned_cols=201  Identities=15%  Similarity=0.138  Sum_probs=114.1

Q ss_pred             HHHHHHhhcCCChhHHHHHH-HHHHHHHhhc---CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHh-----hh--c
Q 007670            7 TSVNGLLNKLSDRDTYSQAA-KELDSIAATV---DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN-----SH--N   75 (594)
Q Consensus         7 ~rvl~~L~KLsDrDT~r~A~-~eLD~LA~~L---ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae-----~h--~   75 (594)
                      .++++.|..+-.+|+...|+ .+++.|..++   ..+--..++..+..-+.+-+++.||.-++++|.+..     ..  +
T Consensus        21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~  100 (339)
T PF12074_consen   21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF  100 (339)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence            34444444444444333332 3344455554   232355666777777888889999999999999874     22  8


Q ss_pred             cccchHHHHHHHHhhhcCCChhHHH---HHHHHHHhhchhhhcc--------------hhHH-hHHHHHHHHccC-CChh
Q 007670           76 LSPYITKIINSITRNFRDKNSALQA---TCISTVSSLSPRVGAS--------------AFVT-MLKLLSDALFTE-QDTN  136 (594)
Q Consensus        76 isphLpkIL~~IvrrLkD~Ds~VR~---Ac~~ALG~LAe~l~~~--------------~~~~-~lkPL~eaL~~e-q~k~  136 (594)
                      +.+.+|.++.++.+...-|-+....   .|+.++-.+.....+.              +... ++.|=+   ... .+..
T Consensus       101 ~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kv---yskl~~~~  177 (339)
T PF12074_consen  101 AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKV---YSKLASEE  177 (339)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHH---HhccCCHh
Confidence            8888889998888888877655321   1111111111111110              0011 111111   112 2344


Q ss_pred             HHHHHHHHHHHHHhhcCCCcchh-HHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007670          137 AQVGAALCLAATIDAAQDPDAGK-LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS  212 (594)
Q Consensus       137 vQ~~Aa~ALaavvE~l~~~i~~y-L~~L~~RL~klL~s~--~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~  212 (594)
                      ...-.+.+|.+++....+...+- ...+..-++-++-++  +.+++..++.++..+.......  .-..++..+..+|.
T Consensus       178 d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~--l~~~li~~l~~~l~  254 (339)
T PF12074_consen  178 DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL--LSKSLISGLWKWLS  254 (339)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHH
Confidence            44566777777776655443222 234455577777777  8899999999999877554332  33445666666664

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.59  E-value=14  Score=47.00  Aligned_cols=212  Identities=12%  Similarity=0.065  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-------CCCCcchHHHHHHHHH---HHhhh--ccccchHHHHHHHH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS-------SDKPGVRKECIHVIAT---LSNSH--NLSPYITKIINSIT   88 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s-------s~kp~~RKaaI~lLGv---lae~h--~isphLpkIL~~Iv   88 (594)
                      +.++.....-.++..|.-..|.|++.-+.+-..       ..++.-|  .+..|+.   +++.+  ++.||-..++-.++
T Consensus      1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~R--li~fy~f~~~l~esl~si~~pYf~~~l~~~~ 1442 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLER--LISFYHFADYLQESLKSIVTPYFGYLLEPRV 1442 (1621)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            677777777888888887777666666654432       2222333  3333333   37777  78888777766555


Q ss_pred             hhhcCCC------------hhHHHHHHHHHHhhchhhhcc--------------hhHHhHHHHHHHHccC-C----ChhH
Q 007670           89 RNFRDKN------------SALQATCISTVSSLSPRVGAS--------------AFVTMLKLLSDALFTE-Q----DTNA  137 (594)
Q Consensus        89 rrLkD~D------------s~VR~Ac~~ALG~LAe~l~~~--------------~~~~~lkPL~eaL~~e-q----~k~v  137 (594)
                      -.|+--+            ...|  -+..+|+|.-.+...              .+..+..|+...|... .    ...|
T Consensus      1443 ~~L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v 1520 (1621)
T KOG1837|consen 1443 ILLKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIV 1520 (1621)
T ss_pred             HHHHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHH
Confidence            4444333            2334  344555555555422              1223677888887531 1    2223


Q ss_pred             HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcH
Q 007670          138 QVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDW  216 (594)
Q Consensus       138 Q~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw  216 (594)
                      -...+.|++.+--..++.    +++|..++++...+.+.+++-++|-.+--++.--|++ .+.+++++|.|.+.+.++|-
T Consensus      1521 ~~~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~ 1596 (1621)
T KOG1837|consen 1521 SKLLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDD 1596 (1621)
T ss_pred             HHHHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHH
Confidence            333344444433322332    7888888888888889899988888888777767776 48899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCccchh
Q 007670          217 AARKAAAEALWRLAVVEKDAVPEF  240 (594)
Q Consensus       217 ~lRKaAaDaLg~IA~a~gd~f~py  240 (594)
                      ++--.+.+.+-.+=...|+.|..|
T Consensus      1597 ~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1597 EVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred             HHHHHHHHHHHHHHHHhchhhhhc
Confidence            988888887777777889977766

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=89.58  E-value=5.7  Score=41.47  Aligned_cols=141  Identities=14%  Similarity=0.097  Sum_probs=96.5

Q ss_pred             ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch---hH------H---hHHHHHHHHc----cCCChhHH
Q 007670           75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FV------T---MLKLLSDALF----TEQDTNAQ  138 (594)
Q Consensus        75 ~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~---~~------~---~lkPL~eaL~----~eq~k~vQ  138 (594)
                      .+..|++-++|.|...+-|.++.+|--.|..|..|...+....   +.      +   .+.|++-.|=    .++...+-
T Consensus       112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll  191 (282)
T PF10521_consen  112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL  191 (282)
T ss_pred             hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence            8889999999999999999999999999999999998774322   11      1   2333333221    13345555


Q ss_pred             HHHHHHHHHHHhhcCCCc----chhHHHHHHH-HHHHhcCC----chhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHH
Q 007670          139 VGAALCLAATIDAAQDPD----AGKLGRMEVR-LERLLKSE----VFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLL  208 (594)
Q Consensus       139 ~~Aa~ALaavvE~l~~~i----~~yL~~L~~R-L~klL~s~----~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~  208 (594)
                      ..|.-||-.++.......    ...+.+++.. ++.-+.+.    .......++..+..++..-|.. .-|+..+++.|.
T Consensus       192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~  271 (282)
T PF10521_consen  192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS  271 (282)
T ss_pred             HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            677778877766542221    2234443333 55555444    3566778888888888776665 499999999999


Q ss_pred             hhhcCCc
Q 007670          209 GFLSSQD  215 (594)
Q Consensus       209 e~L~seD  215 (594)
                      ++|.+.+
T Consensus       272 ~~l~npf  278 (282)
T PF10521_consen  272 QILENPF  278 (282)
T ss_pred             HHhcCCC
Confidence            9988754

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.25  E-value=1.6  Score=39.63  Aligned_cols=114  Identities=20%  Similarity=0.292  Sum_probs=75.2

Q ss_pred             HHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------------------ccccchHHHHHHHHh
Q 007670           28 ELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------------------NLSPYITKIINSITR   89 (594)
Q Consensus        28 eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------------------~isphLpkIL~~Ivr   89 (594)
                      .|-.|+..-=|+.-|-|+..+.+...+ .+......+..|..+.++.                  .+..+++.|+.++.+
T Consensus        11 ~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~   89 (148)
T PF08389_consen   11 VLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQ   89 (148)
T ss_dssp             HHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455554455556566666555443 3667777888888875555                  245567888888888


Q ss_pred             hhcCCC----hhHHHHHHHHHHhhchhhhcchhH-H-hHHHHHHHHccCCChhHHHHHHHHH
Q 007670           90 NFRDKN----SALQATCISTVSSLSPRVGASAFV-T-MLKLLSDALFTEQDTNAQVGAALCL  145 (594)
Q Consensus        90 rLkD~D----s~VR~Ac~~ALG~LAe~l~~~~~~-~-~lkPL~eaL~~eq~k~vQ~~Aa~AL  145 (594)
                      .|....    ..+..++..+++.+..|+.-.-.. . ++.-++..|   +++..+..|+-||
T Consensus        90 ~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l---~~~~~~~~A~~cl  148 (148)
T PF08389_consen   90 ILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL---QSPELREAAAECL  148 (148)
T ss_dssp             HHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT---TSCCCHHHHHHHH
T ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc---CCHHHHHHHHHhC
Confidence            888766    567888888888888877311111 1 677777766   4666688888886

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=89.10  E-value=0.57  Score=34.52  Aligned_cols=29  Identities=10%  Similarity=0.202  Sum_probs=26.2

Q ss_pred             HHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670           83 IINSITRNFRDKNSALQATCISTVSSLSP  111 (594)
Q Consensus        83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe  111 (594)
                      .+|.+++.|++++..|+..|++||+.|+.
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            57889999999999999999999998874

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=88.94  E-value=13  Score=44.69  Aligned_cols=137  Identities=12%  Similarity=0.178  Sum_probs=105.7

Q ss_pred             CCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC
Q 007670           55 DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE  132 (594)
Q Consensus        55 ~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e  132 (594)
                      .+-.+-.-+...|+.+|-.-  ...+|...++|.|..+++|--+.||++.+.++=.++.-.   +...+.+-++++| .+
T Consensus       307 aN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---~l~~~~~~I~e~l-k~  382 (815)
T KOG1820|consen  307 ANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST---PLSKMSEAILEAL-KG  382 (815)
T ss_pred             cchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHh-cC
Confidence            34445556666667776666  777899999999999999999999999988887777622   3333666666666 66


Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCcc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670          133 QDTNAQVGAALCLAATIDAAQDPDA--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       133 q~k~vQ~~Aa~ALaavvE~l~~~i~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~  195 (594)
                      .++.+-..-...|++.+...++...  +-+..+++-+++..+...-.++.+++.+++.+..+-|+
T Consensus       383 knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge  447 (815)
T KOG1820|consen  383 KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE  447 (815)
T ss_pred             CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence            7777767777889999999886543  45788999999999888888999999999998866443

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=88.80  E-value=5.4  Score=47.11  Aligned_cols=172  Identities=16%  Similarity=0.145  Sum_probs=102.1

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      .-+++..+.   .+.+|..|..++..++..=-|---..-+.++|++   .++|++--||+||+.|+|-++-.-.++ ...
T Consensus       520 Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~---aVsD~nDDVrRaAVialGFVl~~dp~~-~~s  592 (929)
T KOG2062|consen  520 ADPLIKELL---RDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRDPEQ-LPS  592 (929)
T ss_pred             hHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCchhhHHHhhcc---cccccchHHHHHHHHHheeeEecChhh-chH
Confidence            566555554   4568999999999888762222111223344443   357999999999999999876444211 113


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG  199 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py  199 (594)
                      ++.+|.+.    -|++|--|||+||--+|-+.+... ...|..    |.+  +..+|--+.|+|+.-=-+.+.....-|-
T Consensus       593 ~V~lLses----~N~HVRyGaA~ALGIaCAGtG~~eAi~lLep----l~~--D~~~fVRQgAlIa~amIm~Q~t~~~~pk  662 (929)
T KOG2062|consen  593 TVSLLSES----YNPHVRYGAAMALGIACAGTGLKEAINLLEP----LTS--DPVDFVRQGALIALAMIMIQQTEQLCPK  662 (929)
T ss_pred             HHHHHhhh----cChhhhhhHHHHHhhhhcCCCcHHHHHHHhh----hhc--ChHHHHHHHHHHHHHHHHHhcccccCch
Confidence            55555544    499999999999998888765432 223333    333  3344444555555444445555454444


Q ss_pred             hHHHHHHHHhhhc--CCcHHHHHHHHHHHHHH
Q 007670          200 LKGLVSCLLGFLS--SQDWAARKAAAEALWRL  229 (594)
Q Consensus       200 f~~lm~~L~e~L~--seDw~lRKaAaDaLg~I  229 (594)
                      ...+...+...+.  .+|-.+.-.|+-+=|-+
T Consensus       663 v~~frk~l~kvI~dKhEd~~aK~GAilAqGil  694 (929)
T KOG2062|consen  663 VNGFRKQLEKVINDKHEDGMAKFGAILAQGIL  694 (929)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Confidence            4555555555544  35655555566665555

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=88.76  E-value=4.1  Score=36.88  Aligned_cols=73  Identities=16%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             cchHHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhH-HHHHHHHHHHHHhhc
Q 007670           78 PYITKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNA-QVGAALCLAATIDAA  152 (594)
Q Consensus        78 phLpkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~v-Q~~Aa~ALaavvE~l  152 (594)
                      .+++.|+|++.++|+ -..+-.|-||.--+++|+....  =...++..|++++........ +..+..||..+++.=
T Consensus         2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ   76 (121)
T ss_pred             cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence            378999999999999 6777899999999999999882  122378888888875433332 477899999999764

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.67  E-value=13  Score=44.34  Aligned_cols=198  Identities=15%  Similarity=0.199  Sum_probs=99.9

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF  118 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~  118 (594)
                      +.+|+..|.....+-.-.+=-++-+++-.+....  .++|    -++++.-.+.-|.+.+|-|+..+|-.+|...+  ..
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P--~~  316 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP--QA  316 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC--cc
Confidence            4455555544443322233334444444432222  4445    66777777888999999999999999998773  23


Q ss_pred             HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHhcCcCc
Q 007670          119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK--SEVFKAKAAGLVVVGSVIGSGAVD  196 (594)
Q Consensus       119 ~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~--s~~fkaK~alL~aIGSiA~a~~~~  196 (594)
                      +..+.+=++.|..+.++.+.   -+|+..+.-.-.+   .-.-.||..+.....  ++.||  ..++.+|.|+-.   -|
T Consensus       317 v~~cN~elE~lItd~NrsIa---t~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFK--ivvvdai~sLc~---~f  385 (865)
T KOG1078|consen  317 VTVCNLDLESLITDSNRSIA---TLAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFK--IVVVDAIRSLCL---KF  385 (865)
T ss_pred             ccccchhHHhhhcccccchh---HHHHHHHHHhcch---hHHHHHHHHHHHHHHhccccce--EEeHHHHHHHHh---hc
Confidence            34566666666666666543   3444444332221   122333333333332  22333  234445554331   11


Q ss_pred             CCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH
Q 007670          197 GSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK  255 (594)
Q Consensus       197 ~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK  255 (594)
                      +.--..+|..|...|.+ ..+.-.++..|++..++....+.=.+-...++.-+|.|-|.+
T Consensus       386 p~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~  445 (865)
T KOG1078|consen  386 PRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQ  445 (865)
T ss_pred             cHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchH
Confidence            10011233334443333 235555566666666665544433334455556666666666

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.65  E-value=7.4  Score=44.39  Aligned_cols=206  Identities=19%  Similarity=0.158  Sum_probs=107.0

Q ss_pred             HHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHH
Q 007670           26 AKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIST  105 (594)
Q Consensus        26 ~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~A  105 (594)
                      +-.|-.+.+.|+-++|..+...+....  .+...|+--+-+|+.+.....+        .+|...|...+..--. +...
T Consensus       349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av--------~~i~~~I~~~~~~~~e-a~~~  417 (618)
T PF01347_consen  349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAV--------KFIKDLIKSKKLTDDE-AAQL  417 (618)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHH--------HHHHHHHHTT-S-HHH-HHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHH--------HHHHHHHHcCCCCHHH-HHHH
Confidence            555666666666666666666554322  3455666666666665333211        1222233222221111 2233


Q ss_pred             HHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhc-CC------------Cc-chhHHHHHHHHH
Q 007670          106 VSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAA-QD------------PD-AGKLGRMEVRLE  168 (594)
Q Consensus       106 LG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l-~~------------~i-~~yL~~L~~RL~  168 (594)
                      +..|...... |...+++=+++.+.   ..+++.+..+|.+++..++-.. ..            .+ ..|.+.|...|.
T Consensus       418 l~~l~~~~~~-Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  496 (618)
T PF01347_consen  418 LASLPFHVRR-PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELK  496 (618)
T ss_dssp             HHHHHHT------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHH
T ss_pred             HHHHHhhcCC-CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHH
Confidence            4444444422 22223443333331   2345667778888888887663 11            11 246666666666


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670          169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCL  245 (594)
Q Consensus       169 klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~se---Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m  245 (594)
                      ......+...+...|-|||-+   |      .+.+++.|..++...   .-.+|.+|+.+|..++....+.+.+   -++
T Consensus       497 ~~~~~~~~~~~~~~LkaLgN~---g------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~---~l~  564 (618)
T PF01347_consen  497 EAVSRGDEEEKIVYLKALGNL---G------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE---ILL  564 (618)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHH---T-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH---HHH
T ss_pred             HHhhccCHHHHHHHHHHhhcc---C------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH---HHH
Confidence            777777778888888888843   3      245778888888766   6888999999999885544333332   233


Q ss_pred             HHHHhcchhH
Q 007670          246 KIFESKRFDK  255 (594)
Q Consensus       246 ~sLEs~RfDK  255 (594)
                      .++.+..-|-
T Consensus       565 ~I~~n~~e~~  574 (618)
T PF01347_consen  565 PIFMNTTEDP  574 (618)
T ss_dssp             HHHH-TTS-H
T ss_pred             HHhcCCCCCh
Confidence            5555554444

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.51  E-value=2.7  Score=45.09  Aligned_cols=141  Identities=13%  Similarity=0.213  Sum_probs=101.7

Q ss_pred             HHHHHhhcCCChhHHH--HHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccc
Q 007670            8 SVNGLLNKLSDRDTYS--QAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPY   79 (594)
Q Consensus         8 rvl~~L~KLsDrDT~r--~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isph   79 (594)
                      -+.+.|.+|++.|...  -++..|..++.-=+ +.    +-..+-.+.....++.+.+=|++++.++.+.+.+  .+...
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999888433  35555555544322 33    2233334456678888999999999999998888  55457


Q ss_pred             hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670           80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ  153 (594)
Q Consensus        80 LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~  153 (594)
                      |...+-.+..+-.+..--||+++-+||-.+..+.  .|.. +++=|+-.+ .+.++.+-..+|.|+-..+..++
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v--tp~~-~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~rl~  237 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV--TPQK-LLRKLIPIL-QHSNPRVRAKAALCFSRCVIRLG  237 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc--ChHH-HHHHHHHHH-hhhchhhhhhhhccccccceecc
Confidence            7777777777777777789999999999999988  3322 455555555 56788899999999999998876

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=87.97  E-value=3.1  Score=47.85  Aligned_cols=112  Identities=10%  Similarity=0.185  Sum_probs=81.2

Q ss_pred             CCCCCCcchHHHHHHHHHHH-hhhccccchHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670           52 NSSDKPGVRKECIHVIATLS-NSHNLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL  129 (594)
Q Consensus        52 ~ss~kp~~RKaaI~lLGvla-e~h~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL  129 (594)
                      .+..+--+||+|+-+||.+| ...       ..++-++..|.| .+..||-+.+.|||..|....++    ....++++|
T Consensus       561 vsD~nDDVrRAAViAlGfvc~~D~-------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L  629 (926)
T COG5116         561 VSDGNDDVRRAAVIALGFVCCDDR-------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEAL  629 (926)
T ss_pred             cccCchHHHHHHHHheeeeEecCc-------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHH
Confidence            33445579999999999874 332       234555666666 45789999999999998877433    334455566


Q ss_pred             ccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q 007670          130 FTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE  174 (594)
Q Consensus       130 ~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~  174 (594)
                      +.+.+--|..+|+.|+.-+.=-..++..|.+..+...+..++...
T Consensus       630 ~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K  674 (926)
T COG5116         630 MYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK  674 (926)
T ss_pred             hhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence            555666688899999988877777777788888888888888655

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=87.92  E-value=29  Score=36.80  Aligned_cols=63  Identities=19%  Similarity=0.413  Sum_probs=47.2

Q ss_pred             CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 007670           38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLS  110 (594)
Q Consensus        38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA  110 (594)
                      .+.+|++..-+.+  .++.|.+|-++--+||.+.        -+.+++++.|-.+||-..||..|..|+.++-
T Consensus        66 ~~Av~~l~~vl~d--esq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle  128 (289)
T KOG0567|consen   66 EDAVPVLVEVLLD--ESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKRLE  128 (289)
T ss_pred             chhhHHHHHHhcc--cccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence            3337777777774  5678899999999998764        2344555556668999999999999988874

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.66  E-value=11  Score=44.23  Aligned_cols=54  Identities=13%  Similarity=0.009  Sum_probs=38.9

Q ss_pred             cchHHHHHHHHHHHhhhccccchHHHHHH-HHhhhcCCChhHHHHHHHHHHhhch
Q 007670           58 GVRKECIHVIATLSNSHNLSPYITKIINS-ITRNFRDKNSALQATCISTVSSLSP  111 (594)
Q Consensus        58 ~~RKaaI~lLGvlae~h~isphLpkIL~~-IvrrLkD~Ds~VR~Ac~~ALG~LAe  111 (594)
                      ..|-.++...+.++..-.=.+|-++-+.- +..-..|.|+.||.+|+++|=+|++
T Consensus       173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e  227 (823)
T KOG2259|consen  173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE  227 (823)
T ss_pred             cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc
Confidence            45556666666665544223555555554 8888999999999999999988888

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=87.62  E-value=4.5  Score=40.51  Aligned_cols=83  Identities=18%  Similarity=0.107  Sum_probs=62.6

Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC--c--------------
Q 007670          133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV--D--------------  196 (594)
Q Consensus       133 q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~--~--------------  196 (594)
                      +-..+-.-....+.++++.++..-.+++..++..|.++-++++|..|..+=.+||+++.+-|-  +              
T Consensus        12 ~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~   91 (198)
T PF08161_consen   12 RYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDS   91 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcC
Confidence            344455567778888888888777789999999999999999999999999999998866221  1              


Q ss_pred             CCchHHHHHHHHhhhcCCc
Q 007670          197 GSGLKGLVSCLLGFLSSQD  215 (594)
Q Consensus       197 ~pyf~~lm~~L~e~L~seD  215 (594)
                      .+-=.+++|.|.+++....
T Consensus        92 ~~~raWLLPlLr~~i~~~~  110 (198)
T PF08161_consen   92 QPGRAWLLPLLRDHIRNAS  110 (198)
T ss_pred             CcccchhHHHHHHhccCCC
Confidence            1222357888888876543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=87.19  E-value=22  Score=38.95  Aligned_cols=176  Identities=13%  Similarity=0.177  Sum_probs=103.5

Q ss_pred             CCcchHH---HHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH------HhHHH
Q 007670           56 KPGVRKE---CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV------TMLKL  124 (594)
Q Consensus        56 kp~~RKa---aI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~------~~lkP  124 (594)
                      +-.+|.-   |+.+|..|-..-.=+-..|.++|.+.++|.-+|.+|.--+|..+|++-+.+...  ..+      -+++.
T Consensus        53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl  132 (524)
T KOG4413|consen   53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL  132 (524)
T ss_pred             cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence            3457777   666666663222222235677899999999999999999999999999988522  111      17888


Q ss_pred             HHHHHccCCChhHHHHHHHHHHHHH---hhc----CCCcc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670          125 LSDALFTEQDTNAQVGAALCLAATI---DAA----QDPDA--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       125 L~eaL~~eq~k~vQ~~Aa~ALaavv---E~l----~~~i~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~  195 (594)
                      +++.+.++.+ .|..+|.-.|.++-   .++    +....  -.+..|-.|-     ++  -++--++++|--|.++..+
T Consensus       133 ildcIggedd-eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc-----nd--iaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  133 ILDCIGGEDD-EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC-----ND--IARVRVLELIIEIFSISPE  204 (524)
T ss_pred             HHHHHcCCcH-HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh-----hh--HHHHHHHHHHHHHHhcCHH
Confidence            9999965444 44444443332221   111    11100  0111111111     11  1344467777777766655


Q ss_pred             cCCch--HHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH-cCCccch
Q 007670          196 DGSGL--KGLVSCLLGFLSS-QDWAARKAAAEALWRLAVV-EKDAVPE  239 (594)
Q Consensus       196 ~~pyf--~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a-~gd~f~p  239 (594)
                      ...|.  ..++..|..-|.. +|--+|...+|....+|.. +|.-|-|
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla  252 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA  252 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence            43222  2355666655654 7888888899999999986 4644443

>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B

Probab=87.15  E-value=12  Score=47.79  Aligned_cols=208  Identities=19%  Similarity=0.233  Sum_probs=113.4

Q ss_pred             CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--c-cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh
Q 007670           38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG  114 (594)
Q Consensus        38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~-isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~  114 (594)
                      .+.|+.||+.......+.++.+|.-+..++-.+=..+  + ...-+..++.+|+.+   .++.| ++|++.|-.|+....
T Consensus       430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg---~~~ev-~~aL~vL~~L~~~~~  505 (1426)
T PF14631_consen  430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSG---NSQEV-DAALDVLCELAEKNP  505 (1426)
T ss_dssp             TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCC---cHHHH-HHHHHHHHHHHhccH
Confidence            4469999999988899999888888888887775544  2 112244455555443   44455 799999999987654


Q ss_pred             c--chhHHhHHHHHHHHccCCChhHHHH-H--HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670          115 A--SAFVTMLKLLSDALFTEQDTNAQVG-A--ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV  189 (594)
Q Consensus       115 ~--~~~~~~lkPL~eaL~~eq~k~vQ~~-A--a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSi  189 (594)
                      +  .++..+++.+++.|- .=+ -.|+. .  .+|.-++-+  .......-..|.--+-|.|.+++++.|  .+|.||++
T Consensus       506 ~~l~~fa~~l~giLD~l~-~Ls-~~qiR~lf~il~~La~~~--~~~~s~i~del~ivIRKQLss~~~~~K--~~GIIGav  579 (1426)
T PF14631_consen  506 SELQPFATFLKGILDYLD-NLS-LQQIRKLFDILCTLAFSD--SSSSSSIQDELHIVIRKQLSSSNPKYK--RIGIIGAV  579 (1426)
T ss_dssp             HHHHHTHHHHHGGGGGGG-G---HHHHHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHHHT-SSHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHHHhcCC--cccchhhHHHHHHHHHHhhcCCcHHHH--HHhHHHHH
Confidence            3  256679999999983 222 23332 2  222222323  111112234466678899999988877  45666665


Q ss_pred             Hhc---CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---CccchhhhHHHHHHHhcchhHHHHHH
Q 007670          190 IGS---GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLKIFESKRFDKMIEAW  260 (594)
Q Consensus       190 A~a---~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g---d~f~py~~~~m~sLEs~RfDK~i~lW  260 (594)
                      ..+   +.... -.+......    .+-.-..++.+...|..+-...+   +...-|.+++-+.+...++|..+.-|
T Consensus       580 ~~i~~la~~~~-~~~~~~~~~----~~l~~~~~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~li~~~~l~~~~~~w  651 (1426)
T PF14631_consen  580 MMIKHLAAKNS-ESDSSSSER----SNLSDEQCKQATSLLELVQSSSEQSPEALALFYDELANLIQSRKLDPKFLEW  651 (1426)
T ss_dssp             HHHHHTT-----------------------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHS---HHHHHH
T ss_pred             HHHHHHHHHhc-cCCcccccc----ccCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            533   22211 001111100    00012234556666665444433   46666778888888989999955545

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=86.09  E-value=18  Score=38.56  Aligned_cols=154  Identities=13%  Similarity=0.203  Sum_probs=100.1

Q ss_pred             hHHHHHhh-hhcCCCCCCcchHH-HHHHHHHHHhhh--ccccchHHHHHHHHhh----hcCC---ChhHHHHHHHHHHhh
Q 007670           41 LPTFLSCI-LSTNSSDKPGVRKE-CIHVIATLSNSH--NLSPYITKIINSITRN----FRDK---NSALQATCISTVSSL  109 (594)
Q Consensus        41 lp~fLs~L-~e~~ss~kp~~RKa-aI~lLGvlae~h--~isphLpkIL~~Ivrr----LkD~---Ds~VR~Ac~~ALG~L  109 (594)
                      +|+++..+ .+|..+ .|..|.. .+.++++++.-.  .+.++++.|+..|..-    +.+.   =|-.|..-..=|..+
T Consensus        69 i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i  147 (319)
T PF08767_consen   69 IPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI  147 (319)
T ss_dssp             HHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence            88989855 677654 6677765 455666666655  7889999998877633    3221   267888888888888


Q ss_pred             chhhhcch--hH-HhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCC---Cc-----chhHHHHHHHHHHHhcCC-
Q 007670          110 SPRVGASA--FV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQD---PD-----AGKLGRMEVRLERLLKSE-  174 (594)
Q Consensus       110 Ae~l~~~~--~~-~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~---~i-----~~yL~~L~~RL~klL~s~-  174 (594)
                      ..++...-  .. ..++.+++++.   .+.++.+...+..+|..++++...   +.     ..|+-.++..++..+... 
T Consensus       148 ~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~  227 (319)
T PF08767_consen  148 NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD  227 (319)
T ss_dssp             HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            77764211  11 14556666654   678999999999999999999754   22     135556777777776433 


Q ss_pred             ---chhhHHHHHHHHHHHHhcCcC
Q 007670          175 ---VFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       175 ---~fkaK~alL~aIGSiA~a~~~  195 (594)
                         .|+....+|..+-.++..+..
T Consensus       228 Hk~gf~~q~~iL~~Lf~~ve~~~i  251 (319)
T PF08767_consen  228 HKSGFKLQSQILSNLFRLVESGSI  251 (319)
T ss_dssp             -GGGHHHHHHHHHHHHHHHHTT-S
T ss_pred             cHHHHHHHHHHHHHHHHHHHcccc
Confidence               566666677666666555444

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=86.03  E-value=2.5  Score=44.40  Aligned_cols=176  Identities=18%  Similarity=0.215  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcCCC--------------ChHHHHHhhhhcCCCCCCcchHHHHHHHHH
Q 007670            5 LKTSVNGLLNKL-SDRDTYSQAAKELDSIAATVDPT--------------LLPTFLSCILSTNSSDKPGVRKECIHVIAT   69 (594)
Q Consensus         5 Lk~rvl~~L~KL-sDrDT~r~A~~eLD~LA~~Lppe--------------~lp~fLs~L~e~~ss~kp~~RKaaI~lLGv   69 (594)
                      ...-++..|.++ ++.||.+..+..++.|...-|.-              -+.+|+.    ...+++++....+...|+.
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~----ll~~~D~~i~~~a~~iLt~  131 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK----LLDRNDSFIQLKAAFILTS  131 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH----H-S-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH----HhcCCCHHHHHHHHHHHHH
Confidence            344567888899 89999999999999988766511              1333333    4556789999999999999


Q ss_pred             HHhhh--cc----ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh-cchh--HHhHHHHHHHHc----cCCChh
Q 007670           70 LSNSH--NL----SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASAF--VTMLKLLSDALF----TEQDTN  136 (594)
Q Consensus        70 lae~h--~i----sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~-~~~~--~~~lkPL~eaL~----~eq~k~  136 (594)
                      +....  ..    ...|+.++..+...++.++..++..|+.+++.|...=. +..+  ...+++|+..|.    .....+
T Consensus       132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~  211 (312)
T PF03224_consen  132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG  211 (312)
T ss_dssp             HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred             HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence            86665  22    24677777777777777778888899988888863321 1112  126777777661    123333


Q ss_pred             HH--HHHHHHHHHH------HhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH
Q 007670          137 AQ--VGAALCLAAT------IDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI  190 (594)
Q Consensus       137 vQ--~~Aa~ALaav------vE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA  190 (594)
                      +|  =-++.|+=-+      ++.+.   ..+   +++.|..+++.. -=|+-..+++++--++
T Consensus       212 ~Ql~Y~~ll~lWlLSF~~~~~~~~~---~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~  268 (312)
T PF03224_consen  212 IQLQYQALLCLWLLSFEPEIAEELN---KKY---LIPLLADILKDSIKEKVVRVSLAILRNLL  268 (312)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHH---TTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHh---ccc---hHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            44  4777776422      22211   112   666666666433 3344444555555444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=85.95  E-value=60  Score=35.74  Aligned_cols=247  Identities=15%  Similarity=0.176  Sum_probs=144.0

Q ss_pred             hhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccch----HHHHHHHHhh
Q 007670           19 RDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYI----TKIINSITRN   90 (594)
Q Consensus        19 rDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphL----pkIL~~Ivrr   90 (594)
                      |++.-.-+..|+.+-+..-+-+ +|.++.-|+--.-+++..++--+..-+|-+.+.|   .++.-+    ..|++.|+--
T Consensus        57 rekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc  136 (524)
T KOG4413|consen   57 REKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC  136 (524)
T ss_pred             cchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH
Confidence            3466667888999888875555 9999999988888999999999999999998888   444433    3677777777


Q ss_pred             hcCCChhHHHHHHHHHHhhchhhhc-----------c---------h-hHH---hHHHHHHHHccCC---ChhHHHHHHH
Q 007670           91 FRDKNSALQATCISTVSSLSPRVGA-----------S---------A-FVT---MLKLLSDALFTEQ---DTNAQVGAAL  143 (594)
Q Consensus        91 LkD~Ds~VR~Ac~~ALG~LAe~l~~-----------~---------~-~~~---~lkPL~eaL~~eq---~k~vQ~~Aa~  143 (594)
                      +-..|-.|-+|+.+++.+++.+-.-           +         + ..+   ++..+++...-..   +.....|-.-
T Consensus       137 IggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLld  216 (524)
T KOG4413|consen  137 IGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLD  216 (524)
T ss_pred             HcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence            8888999999999999998865421           0         0 000   1222222211000   0000011111


Q ss_pred             HHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH---------------------
Q 007670          144 CLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK---------------------  201 (594)
Q Consensus       144 ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~---------------------  201 (594)
                      -|.+=.-+..|.. ..-.-.|...|...=.+..|-++..++..|.+|+..+ ...||-.                     
T Consensus       217 lLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGa-dsdPfekfralmgfgkffgkeaimdvse  295 (524)
T KOG4413|consen  217 LLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGA-DSDPFEKFRALMGFGKFFGKEAIMDVSE  295 (524)
T ss_pred             HHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCC-CCCcHHHHHHHHHHHHHhcchHHhhcCH
Confidence            1111111112221 1112223333444444557778888888888887432 2223211                     


Q ss_pred             -HHHHHHHhh-------hcCCcHHHHHHHHHHHHHHHHHc-C-Ccc----chhhhHHH-HHHHhcchhH---HHHHHhhc
Q 007670          202 -GLVSCLLGF-------LSSQDWAARKAAAEALWRLAVVE-K-DAV----PEFKGKCL-KIFESKRFDK---MIEAWKQV  263 (594)
Q Consensus       202 -~lm~~L~e~-------L~seDw~lRKaAaDaLg~IA~a~-g-d~f----~py~~~~m-~sLEs~RfDK---~i~lWk~i  263 (594)
                       ++...+.-+       +..+|-+...+|+|+||-+.... | +.+    .|-+..++ .++....--|   +|.....|
T Consensus       296 eaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaI  375 (524)
T KOG4413|consen  296 EAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAI  375 (524)
T ss_pred             HHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence             111222222       22468888899999999999863 4 433    23444544 5655555555   77777777


Q ss_pred             CCC
Q 007670          264 PDL  266 (594)
Q Consensus       264 ~~v  266 (594)
                      ++.
T Consensus       376 age  378 (524)
T KOG4413|consen  376 AGE  378 (524)
T ss_pred             hcc
Confidence            743

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.58  E-value=18  Score=43.35  Aligned_cols=101  Identities=11%  Similarity=0.081  Sum_probs=47.9

Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH
Q 007670           84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM  163 (594)
Q Consensus        84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L  163 (594)
                      |-.|.+...|+.+-||+-++.|+-.|=.--  .....-|.-+++-|+.+..+.|-.+|.+|.+.+|-   + -...+++=
T Consensus       145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---e-rldLIHkn  218 (968)
T KOG1060|consen  145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---E-RLDLIHKN  218 (968)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---h-HHHHhhHH
Confidence            334444444444444444444443332111  11122555566666666666666666665554432   1 23455666


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670          164 EVRLERLLKSEVFKAKAAGLVVVGSVI  190 (594)
Q Consensus       164 ~~RL~klL~s~~fkaK~alL~aIGSiA  190 (594)
                      -.||+.+|..=.-=-+..+|..+---|
T Consensus       219 yrklC~ll~dvdeWgQvvlI~mL~RYA  245 (968)
T KOG1060|consen  219 YRKLCRLLPDVDEWGQVVLINMLTRYA  245 (968)
T ss_pred             HHHHHhhccchhhhhHHHHHHHHHHHH
Confidence            666777773222223444555554444

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=85.21  E-value=12  Score=43.95  Aligned_cols=126  Identities=10%  Similarity=0.213  Sum_probs=91.0

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---cc-ccchHHH
Q 007670            9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL-SPYITKI   83 (594)
Q Consensus         9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~i-sphLpkI   83 (594)
                      +.-+++.=.-.++.-+=++-+|.|.+-++++. ...+|+.|+.+..+.+...-..++..++.+++.-   ++ .+-||+|
T Consensus       354 l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l  433 (700)
T KOG2137|consen  354 LKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRL  433 (700)
T ss_pred             HHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHh
Confidence            33444442334577778899999999999888 8889999998888889999999999999998877   22 2334444


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHH
Q 007670           84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQ  138 (594)
Q Consensus        84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ  138 (594)
                      ...   -++-....|+..|+.++|.+.+.+.+-...-.+.|++..+ .-.++.+-
T Consensus       434 ~~l---~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv  484 (700)
T KOG2137|consen  434 KNL---AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIV  484 (700)
T ss_pred             hcc---hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHH
Confidence            443   4566778899999999999997773222223777888777 23455443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=85.13  E-value=7.8  Score=34.29  Aligned_cols=83  Identities=18%  Similarity=0.308  Sum_probs=66.8

Q ss_pred             HHHHHHhhcCCChh--HHHHHHHHHHHHHhhcC-CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH
Q 007670            7 TSVNGLLNKLSDRD--TYSQAAKELDSIAATVD-PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK   82 (594)
Q Consensus         7 ~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lp-pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk   82 (594)
                      ...-.++..|.|..  .+.-|+..|..++++-+ +-. ++.++..+.+...++++++==.||..|+.||..|     =..
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-----p~~   77 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-----PDE   77 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-----hHH
Confidence            45567788888888  77889999999999876 444 9999999999999999999999999999999876     123


Q ss_pred             HHHHHHhhhcCC
Q 007670           83 IINSITRNFRDK   94 (594)
Q Consensus        83 IL~~IvrrLkD~   94 (594)
                      +++.+++...|+
T Consensus        78 vl~~L~~~y~~~   89 (92)
T PF10363_consen   78 VLPILLDEYADP   89 (92)
T ss_pred             HHHHHHHHHhCc
Confidence            566666665554

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=85.05  E-value=31  Score=39.01  Aligned_cols=189  Identities=16%  Similarity=0.131  Sum_probs=116.3

Q ss_pred             HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----cc-ccchHHHHHHHHh-hhcCCChhHHHHHHHHHHhhchhhh
Q 007670           42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NL-SPYITKIINSITR-NFRDKNSALQATCISTVSSLSPRVG  114 (594)
Q Consensus        42 p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~i-sphLpkIL~~Ivr-rLkD~Ds~VR~Ac~~ALG~LAe~l~  114 (594)
                      |.||..+.+.+.|.+...--.+.+++|..|+--     ++ ..+|.++|..+.+ .--|.+..+.+||+-||..|+=..+
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            447788888888888888899999999997643     33 3458999999998 7788889999999999999876654


Q ss_pred             cch-hH-H-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh--HHHHHHHHHHHhcCCchh-hHHHHHHHHHH
Q 007670          115 ASA-FV-T-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK--LGRMEVRLERLLKSEVFK-AKAAGLVVVGS  188 (594)
Q Consensus       115 ~~~-~~-~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y--L~~L~~RL~klL~s~~fk-aK~alL~aIGS  188 (594)
                      ... +. + +..-++--| .--.|.||-.-.+-|--++++.++.-.+.  =+++.+||..--++++|. +-.--.-.+..
T Consensus       394 nka~~~~aGvteaIL~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~  472 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG  472 (604)
T ss_pred             chhhccccchHHHHHHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence            321 11 1 111111112 11234455555555555566543322222  256888888888888876 21112223333


Q ss_pred             HHhcCc---Cc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          189 VIGSGA---VD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       189 iA~a~~---~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      ++..++   ..  .|- ...+..++..++.+..-....|.-+|..++..
T Consensus       473 lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~  520 (604)
T KOG4500|consen  473 LIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVALLSTESK  520 (604)
T ss_pred             HHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence            332211   11  121 12367777777777777777777777777764

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.95  E-value=17  Score=41.74  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcC--CChh
Q 007670           21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD--KNSA   97 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD--~Ds~   97 (594)
                      ++....+.|.-+|--+..+. +.....-+.+  ..+.|..=.+++-.|..++..  +.|+=..+||-|++.+..  ..+.
T Consensus       368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~--~~~~e~~i~pevl~~i~nlp~Q~~  443 (559)
T KOG2081|consen  368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKN--VSPEENTIMPEVLKLICNLPEQAP  443 (559)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhcc--CCccccchHHHHHHHHhCCccchh
Confidence            44445555555666666655 6655555554  345566677777777766554  444444444444444433  2235


Q ss_pred             HHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCc---chhHHHHHHHHHHHhcC
Q 007670           98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPD---AGKLGRMEVRLERLLKS  173 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~-~eq~k~vQ~~Aa~ALaavvE~l~~~i---~~yL~~L~~RL~klL~s  173 (594)
                      ||.+++--+|.+++|+...|.  ++.|+...++ +-+.+..+.+|+.|...++...-+..   .+++-.|..-+...+-+
T Consensus       444 ~~~ts~ll~g~~~ew~~~~p~--~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~  521 (559)
T KOG2081|consen  444 LRYTSILLLGEYSEWVEQHPE--LLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN  521 (559)
T ss_pred             HHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Confidence            999999999999999976663  4444444443 22455688999999999999875443   45555555544444434


Q ss_pred             CchhhHHHHHHHHHHHH
Q 007670          174 EVFKAKAAGLVVVGSVI  190 (594)
Q Consensus       174 ~~fkaK~alL~aIGSiA  190 (594)
                      +-  +-. ++-.|..++
T Consensus       522 ~e--~a~-l~~~~s~i~  535 (559)
T KOG2081|consen  522 EE--AAC-LLQGISLII  535 (559)
T ss_pred             HH--HHH-HHHHHHHHH
Confidence            22  211 444555444

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=84.52  E-value=1.9  Score=42.43  Aligned_cols=96  Identities=11%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             ccccchHHHHHHHHhhhcC-C-----------------ChhHHHHHHHHHHhhchhhhcchh-HHhHHHHHHHHccCCCh
Q 007670           75 NLSPYITKIINSITRNFRD-K-----------------NSALQATCISTVSSLSPRVGASAF-VTMLKLLSDALFTEQDT  135 (594)
Q Consensus        75 ~isphLpkIL~~IvrrLkD-~-----------------Ds~VR~Ac~~ALG~LAe~l~~~~~-~~~lkPL~eaL~~eq~k  135 (594)
                      .+.|||+.|+|.|..-++= +                 .--+|.+|.++|-.+-+.+...-. ..|+.-+...| ++ +.
T Consensus         2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL-~D-~~   79 (169)
T PF08623_consen    2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL-KD-EH   79 (169)
T ss_dssp             GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT-SS--H
T ss_pred             chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc-CC-cH
Confidence            4679999999999865542 2                 256899999999998776643322 23666666666 55 78


Q ss_pred             hHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670          136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK  172 (594)
Q Consensus       136 ~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~  172 (594)
                      .++.-++.-|.+++...+..+.+.|..|++.|-+.|+
T Consensus        80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~  116 (169)
T PF08623_consen   80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS  116 (169)
T ss_dssp             HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence            8888999999999998887777778888888888884

; PDB: 4A0C_A 1U6G_C.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=84.35  E-value=53  Score=37.41  Aligned_cols=205  Identities=15%  Similarity=0.118  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHH
Q 007670           25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS  104 (594)
Q Consensus        25 A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~  104 (594)
                      .+-.|-.+.+.++.++|..+...+.. ..   ...|+--+-+|+.+...-.        +.+|...++..+-.-.+ +..
T Consensus       312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a--------~~~i~~~i~~~~~~~~e-a~~  378 (574)
T smart00638      312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPA--------LKFIKQWIKNKKITPLE-AAQ  378 (574)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHH--------HHHHHHHHHcCCCCHHH-HHH
Confidence            34445555666676667776666653 11   3455555555554433221        12233333333322111 222


Q ss_pred             HHHhhchhhhcchhHHhHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhc-CCC------c-chhHHHHHHHHHHHhcC
Q 007670          105 TVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAA-QDP------D-AGKLGRMEVRLERLLKS  173 (594)
Q Consensus       105 ALG~LAe~l~~~~~~~~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l-~~~------i-~~yL~~L~~RL~klL~s  173 (594)
                      .+..+...+. .|...+++=+++.+..   .+.+.+-.+|.+++..++-.. .+.      + ..|++.|...|.++.+.
T Consensus       379 ~~~~~~~~~~-~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~  457 (574)
T smart00638      379 LLAVLPHTAR-YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK  457 (574)
T ss_pred             HHHHHHHhhh-cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc
Confidence            3333333332 1222244444444421   235556678888888888743 111      1 34667777777777766


Q ss_pred             CchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-C--CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHh
Q 007670          174 EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-S--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFES  250 (594)
Q Consensus       174 ~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-s--eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs  250 (594)
                      .+..-+.+.|-|||   .+|      .+.+++.|..++. +  ..-.+|.+|+.+|..+|....+.+++.   ++.++.+
T Consensus       458 ~~~~~~~~~LkaLG---N~g------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~---l~~i~~n  525 (574)
T smart00638      458 GDEEEIQLYLKALG---NAG------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV---LLPIYLN  525 (574)
T ss_pred             CCchheeeHHHhhh---ccC------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH---HHHHHcC
Confidence            66666666676776   333      2445566666665 2  246789999999999987655555433   4455655


Q ss_pred             cchhH
Q 007670          251 KRFDK  255 (594)
Q Consensus       251 ~RfDK  255 (594)
                      ...|-
T Consensus       526 ~~e~~  530 (574)
T smart00638      526 RAEPP  530 (574)
T ss_pred             CCCCh
Confidence            55554

>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans

Probab=84.30  E-value=16  Score=37.66  Aligned_cols=159  Identities=18%  Similarity=0.175  Sum_probs=111.8

Q ss_pred             chHHHHHHHHHHHhhh----------ccccchHHHHHHHHhhhcCCC-hhHHHHHHHHHHhhchhhhcc--h-hHH----
Q 007670           59 VRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKN-SALQATCISTVSSLSPRVGAS--A-FVT----  120 (594)
Q Consensus        59 ~RKaaI~lLGvlae~h----------~isphLpkIL~~IvrrLkD~D-s~VR~Ac~~ALG~LAe~l~~~--~-~~~----  120 (594)
                      .=||+-.+||.+++..          +-..++.+|--.++.-|-.-- -++=.++..++..+|+.+...  + ...    
T Consensus        63 ~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~  142 (255)
T PF10350_consen   63 SIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEE  142 (255)
T ss_pred             HHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence            4478888899988432          333467777777777765533 467788999999999999732  2 111    


Q ss_pred             hHHHHHHHHccC-CCh-hHH---HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCch--------hhHHHHHHHHH
Q 007670          121 MLKLLSDALFTE-QDT-NAQ---VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF--------KAKAAGLVVVG  187 (594)
Q Consensus       121 ~lkPL~eaL~~e-q~k-~vQ---~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~f--------kaK~alL~aIG  187 (594)
                      .+.-+++.+.++ +.. .+-   +|--+++.+++-+.+....+.|+..|.+|+++.+.+.-        ..+..++..+.
T Consensus       143 WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr  222 (255)
T PF10350_consen  143 WLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILR  222 (255)
T ss_pred             HHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHH
Confidence            666667776433 111 122   26667788888876554447899999999999988744        36778999999


Q ss_pred             HHHhcCcC---cCCchHHHHHHHHhhhcCCcHH
Q 007670          188 SVIGSGAV---DGSGLKGLVSCLLGFLSSQDWA  217 (594)
Q Consensus       188 SiA~a~~~---~~pyf~~lm~~L~e~L~seDw~  217 (594)
                      +|+.-+.-   ..||+...+..-...+.+++|+
T Consensus       223 ~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa  255 (255)
T PF10350_consen  223 AIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA  255 (255)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence            99965533   3599999888888888899994

Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=83.91  E-value=1.9  Score=50.21  Aligned_cols=71  Identities=11%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhcC---CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh
Q 007670            4 ALKTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH   74 (594)
Q Consensus         4 ~Lk~rvl~~L~KL---sDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h   74 (594)
                      +.-++++-+|.||   -||-++-.=++-++..+.+|++++ -..+++.+..-+.+.++..|..+|+.|.+||.--
T Consensus       326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL  400 (690)
T KOG1243|consen  326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL  400 (690)
T ss_pred             ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence            3456677777776   577788888999999999998766 5555555555555667889999999999986544

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.70  E-value=45  Score=34.82  Aligned_cols=128  Identities=12%  Similarity=0.054  Sum_probs=87.7

Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc---c---hhHHHHHHHHHHHhc--------CCchhhHHHHHHHH
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD---A---GKLGRMEVRLERLLK--------SEVFKAKAAGLVVV  186 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i---~---~yL~~L~~RL~klL~--------s~~fkaK~alL~aI  186 (594)
                      +++|++..+ ++-++.+...+|.||..++++.+...   .   ++..-+-+-+..+|-        .++...=.+++.|+
T Consensus       120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            566666555 88899999999999999999987655   2   234444455666775        45666666678888


Q ss_pred             HHHHhcC--cCcCCchHHHHHHHHh-hhc----CC---cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670          187 GSVIGSG--AVDGSGLKGLVSCLLG-FLS----SQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       187 GSiA~a~--~~~~pyf~~lm~~L~e-~L~----se---Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE  249 (594)
                      -+++.+-  ....++...+...|.+ .|.    ..   .-.+|.+.++.|..+...+|-...-|..+++-.|.
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~  271 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS  271 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            8887653  2223444444444444 222    23   48889999999999999999766667777776554

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.28  E-value=42  Score=38.72  Aligned_cols=159  Identities=14%  Similarity=0.177  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccc
Q 007670            3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY   79 (594)
Q Consensus         3 ~~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isph   79 (594)
                      +.||+-.+...+--.+-.....|+--|..++.+++|+.   +|-.|..|+.- . ...+.|..+++++|.+++--...|.
T Consensus       387 e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p-~Q~~~~~ts~ll~g~~~ew~~~~p~  464 (559)
T KOG2081|consen  387 ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-P-EQAPLRYTSILLLGEYSEWVEQHPE  464 (559)
T ss_pred             HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-c-cchhHHHHHHHHHHHHHHHHHhCcH
Confidence            34555554444434455678889999999999998777   88888888764 2 2334999999999999888755554


Q ss_pred             -hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH-H---hHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007670           80 -ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV-T---MLKLLSDALFTEQDTNAQVGAALCLAATIDAA  152 (594)
Q Consensus        80 -LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~-~---~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l  152 (594)
                       |...+.++..++++..  .-.|+..+.-.++..+..+  +.. .   +..-|...+   -+..++. -+..+..++-++
T Consensus       465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~---~~~e~a~-l~~~~s~i~~~l  538 (559)
T KOG2081|consen  465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQ---INEEAAC-LLQGISLIISNL  538 (559)
T ss_pred             HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---ccHHHHH-HHHHHHHHHhcC
Confidence             6666678888887766  4444444444444444221  100 0   111111111   1333333 445566667777


Q ss_pred             CCC-cchhHHHHHHHHHH
Q 007670          153 QDP-DAGKLGRMEVRLER  169 (594)
Q Consensus       153 ~~~-i~~yL~~L~~RL~k  169 (594)
                      +.. ....+.+||.+.+.
T Consensus       539 p~~k~~~~~~el~~~~l~  556 (559)
T KOG2081|consen  539 PAHKAKIALEELCEPQLR  556 (559)
T ss_pred             CHhhhhHHHHHHhhHHHh
Confidence            644 35578888877554

>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein

Probab=83.26  E-value=22  Score=40.98  Aligned_cols=143  Identities=15%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH-
Q 007670           23 SQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA-  100 (594)
Q Consensus        23 r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~-  100 (594)
                      +.=+..|-..+..|+.+ ...|+..|..... .-++..+++-+..++.|+..|  ..|++.++..+++.+..+....-. 
T Consensus        54 ~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~--~~yl~~vl~~LV~~f~p~~~~~~~~  130 (563)
T PF05327_consen   54 IRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ--PKYLSPVLSMLVKNFIPPPSSIAEW  130 (563)
T ss_dssp             HHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH---GGGHHHHHHHHHHGGGS-HHHHHH-
T ss_pred             HHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhccCCCcccccc
Confidence            33344444455556776 7777777766533 344566777777788887777  558999999999999887765332 


Q ss_pred             -------------HHHHHHHhhchhhhcchhHHhHHHHHHHHc--cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 007670          101 -------------TCISTVSSLSPRVGASAFVTMLKLLSDALF--TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV  165 (594)
Q Consensus       101 -------------Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~--~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~  165 (594)
                                   -+-.+|..+...+  +....+|.|++..-+  ......+|.+=...|=.+++..+.--...|..+++
T Consensus       131 ~~~~~~~~~~~~~~vH~~L~~Il~lv--P~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~  208 (563)
T PF05327_consen  131 PGCPPEKRREIYERVHDALQKILRLV--PTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILSLIIE  208 (563)
T ss_dssp             --------------HHHHHHHHHHH---GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence                         3556666666666  223347777777666  23455666666666666777663333567888888


Q ss_pred             HHHHH
Q 007670          166 RLERL  170 (594)
Q Consensus       166 RL~kl  170 (594)
                      ||+++
T Consensus       209 rLi~i  213 (563)
T PF05327_consen  209 RLIKI  213 (563)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88877

RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=83.10  E-value=85  Score=35.20  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHHh--hcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH
Q 007670            5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAA--TVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK   82 (594)
Q Consensus         5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~--~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk   82 (594)
                      +-+.++.+-.+-++.+-.+..++.||.+..  .+|++.++.++.-|+......  ...+.+.+.+-.|+..|.-    ..
T Consensus       177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g----~~  250 (464)
T PF11864_consen  177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG----HS  250 (464)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH----HH
Confidence            344555565666777788999999999998  689999999999998875544  6788899999999887721    34


Q ss_pred             HHHHHHhhhcCCC------hhHHHHHHHHHHhhchhh
Q 007670           83 IINSITRNFRDKN------SALQATCISTVSSLSPRV  113 (594)
Q Consensus        83 IL~~IvrrLkD~D------s~VR~Ac~~ALG~LAe~l  113 (594)
                      ++-.++.-|++++      ..|-+=|++-++.+.-..
T Consensus       251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~  287 (464)
T PF11864_consen  251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS  287 (464)
T ss_pred             HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence            4455555553333      223334444555544433

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.91  E-value=51  Score=39.73  Aligned_cols=205  Identities=16%  Similarity=0.205  Sum_probs=138.2

Q ss_pred             hHHHHHHHHHhhcC-CCh-h--HHHHHHHHHHHHHhhc--CCCChHHHHHhhhh-------cCCCCCCcchHHHHHHHHH
Q 007670            3 HALKTSVNGLLNKL-SDR-D--TYSQAAKELDSIAATV--DPTLLPTFLSCILS-------TNSSDKPGVRKECIHVIAT   69 (594)
Q Consensus         3 ~~Lk~rvl~~L~KL-sDr-D--T~r~A~~eLD~LA~~L--ppe~lp~fLs~L~e-------~~ss~kp~~RKaaI~lLGv   69 (594)
                      .|+|-.+.-++.+| .|. |  +.-.+++.|..++...  .+++|-+++.-+..       ..+.  -..|-..+.+|+.
T Consensus       521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e--~Dtk~~VL~~ls~  598 (978)
T KOG1993|consen  521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEE--CDTKTSVLNLLST  598 (978)
T ss_pred             HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence            57777787777776 555 3  6667788888888874  57776665544322       2222  2468888999999


Q ss_pred             HHhhh--ccccchHHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcch--hHHhHHHHHHHHccCCChhHHH----
Q 007670           70 LSNSH--NLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQV----  139 (594)
Q Consensus        70 lae~h--~isphLpkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~--~~~~lkPL~eaL~~eq~k~vQ~----  139 (594)
                      +.+-.  .|+||..+|++++-..-+.  .++.+|-|...+|-+|..-+..++  +..|+-|.++.=.+-+.|.++.    
T Consensus       599 lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~ED  678 (978)
T KOG1993|consen  599 LIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLED  678 (978)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhh
Confidence            86655  7889999998888765554  456899999999999999997665  4459999998875555666663    


Q ss_pred             HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcCcCcC-CchHHHHHHHHhhhc
Q 007670          140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-GSGAVDG-SGLKGLVSCLLGFLS  212 (594)
Q Consensus       140 ~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA-~a~~~~~-pyf~~lm~~L~e~L~  212 (594)
                      |..+= -.++++. ....|-|-.|+|-|.-.+.... ..=+.++..|.|-+ --+.+|. -|+..+...+.++|.
T Consensus       679 gmeLW-~~~L~n~-~~l~p~ll~L~p~l~~~iE~st-e~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~  750 (978)
T KOG1993|consen  679 GMELW-LTTLMNS-QKLTPELLLLFPHLLYIIEQST-ENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD  750 (978)
T ss_pred             HHHHH-HHHHhcc-cccCHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            43332 3445554 3345666667777777775432 22234666666644 3355675 788888888877765

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=82.15  E-value=37  Score=39.65  Aligned_cols=207  Identities=16%  Similarity=0.180  Sum_probs=111.2

Q ss_pred             CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchHHHHH--------------------------
Q 007670           37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYITKIIN--------------------------   85 (594)
Q Consensus        37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLpkIL~--------------------------   85 (594)
                      .++-+.+.++.|..++.++....|=.|++.|..|+-.+     .+.|.++.++.                          
T Consensus       297 ~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrL  376 (898)
T COG5240         297 GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRL  376 (898)
T ss_pred             CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHH
Confidence            44447777888888888888888888888888886554     33344444443                          


Q ss_pred             --HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH
Q 007670           86 --SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM  163 (594)
Q Consensus        86 --~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L  163 (594)
                        .|...+.|-.-...-.+.+|+..|+-..... ..+++.=|...|.++-.-.--..+.-|+-.++++.++.-.-.|.. 
T Consensus       377 v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~-  454 (898)
T COG5240         377 VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEV-  454 (898)
T ss_pred             HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHH-
Confidence              3333333322223333444444444433111 112555556666544444444555555555555544322223333 


Q ss_pred             HHHHHHHhcCCchh-hHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhh
Q 007670          164 EVRLERLLKSEVFK-AKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK  241 (594)
Q Consensus       164 ~~RL~klL~s~~fk-aK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~  241 (594)
                         |+..+..--|+ +-.-+|+.+|   .-|.-+ .|.  ..+.++-.-+.-+.--+|.+|..||...|....+.|.|  
T Consensus       455 ---LC~fIEDcey~~I~vrIL~iLG---~EgP~a~~P~--~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--  524 (898)
T COG5240         455 ---LCTFIEDCEYHQITVRILGILG---REGPRAKTPG--KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--  524 (898)
T ss_pred             ---HHHHHhhcchhHHHHHHHHHhc---ccCCCCCCcc--hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--
Confidence               33344322222 1111333333   222112 132  23556666666777889999999999999987787776  


Q ss_pred             hHHHHHHHhcchhH
Q 007670          242 GKCLKIFESKRFDK  255 (594)
Q Consensus       242 ~~~m~sLEs~RfDK  255 (594)
                      .++..+|-.|==|+
T Consensus       525 ~sv~~~lkRclnD~  538 (898)
T COG5240         525 QSVENALKRCLNDQ  538 (898)
T ss_pred             HHHHHHHHHHhhcc
Confidence            34445555555555

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=81.96  E-value=6.4  Score=35.61  Aligned_cols=126  Identities=17%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC----c------------chhH
Q 007670           97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP----D------------AGKL  160 (594)
Q Consensus        97 ~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~----i------------~~yL  160 (594)
                      .||.-.+.+++.++.+.--+.-..++.-++..+.  .++.........|..+.|...+-    +            ...+
T Consensus         3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~--~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~   80 (148)
T PF08389_consen    3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQ--SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence            3555556666666655521111236666666653  24555555666666666665320    0            1223


Q ss_pred             HHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007670          161 GRMEVRLERLLKSEV----FKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL  226 (594)
Q Consensus       161 ~~L~~RL~klL~s~~----fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaL  226 (594)
                      +.+++-+.++|....    -....+++.++++...-.....-.-..+++.+..+|.+++.  |.+|+|+|
T Consensus        81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl  148 (148)
T PF08389_consen   81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence            445555566665432    55667788888887763222110002367888888877665  88899987

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.81  E-value=1.3e+02  Score=36.25  Aligned_cols=83  Identities=12%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             HHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhc-CCChhHH
Q 007670           27 KELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFR-DKNSALQ   99 (594)
Q Consensus        27 ~eLD~LA~~Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLk-D~Ds~VR   99 (594)
                      =|.-.+|-+++++.  +..-+.+|.+.+++-.+..|--++-.+..||..-    .+..|    ...|+..|+ +.|++||
T Consensus       311 FeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSir  386 (938)
T KOG1077|consen  311 FEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIR  386 (938)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHH
Confidence            35667888998777  8999999999999999999988888877775544    55555    455667788 9999999


Q ss_pred             HHHHHHHHhhchhh
Q 007670          100 ATCISTVSSLSPRV  113 (594)
Q Consensus       100 ~Ac~~ALG~LAe~l  113 (594)
                      +-++|=|=.+|+.-
T Consensus       387 rravDLLY~mcD~~  400 (938)
T KOG1077|consen  387 RRAVDLLYAMCDVS  400 (938)
T ss_pred             HHHHHHHHHHhchh
Confidence            99999998888755

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.61  E-value=10  Score=41.89  Aligned_cols=112  Identities=19%  Similarity=0.263  Sum_probs=85.9

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--  116 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--  116 (594)
                      +--++.++    .+.+.-+|+.++.=|--+--.|  .+..|+-.+++-+..++-|-|..||++....+--+...++.+  
T Consensus        60 lkeLl~ql----kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~  135 (393)
T KOG2149|consen   60 LKELLSQL----KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ  135 (393)
T ss_pred             HHHHHhhh----cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence            44444444    4678889999999888876668  777799999999999999999999999988887766666532  


Q ss_pred             -hhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670          117 -AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA  157 (594)
Q Consensus       117 -~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~  157 (594)
                       ++.. ++.=+..|| .+--+.+|.-+..=|.-+++..++...
T Consensus       136 sp~~~l~~~yi~~AM-Thit~~i~~dslkfL~~Ll~~~~p~~~  177 (393)
T KOG2149|consen  136 SPMVSLLMPYISSAM-THITPEIQEDSLKFLSLLLERYPDTFS  177 (393)
T ss_pred             cchHHHHHHHHHHHH-hhccHHHHHhhHHHHHHHHHHcChHHH
Confidence             3333 666666777 677888998888888888886655433

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=81.54  E-value=4.2  Score=45.43  Aligned_cols=107  Identities=18%  Similarity=0.090  Sum_probs=67.1

Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-----chhhHHHHHHHHHHHHhcCcC
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-----VFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-----~fkaK~alL~aIGSiA~a~~~  195 (594)
                      +++||++.+-.|.+...|..+|.+|+.+|+-.-..-..--.||+--|+.+|..+     -|......-.-|-++..-.+.
T Consensus       313 iIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~  392 (441)
T PF12054_consen  313 IIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDK  392 (441)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhccc
Confidence            899999999888999999999999999999876433344578888899998544     333111122222222211111


Q ss_pred             cC----CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670          196 DG----SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD  235 (594)
Q Consensus       196 ~~----pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd  235 (594)
                      ..    ..++.-        ..+-.=.|..|..+|..|+...|+
T Consensus       393 ~~~~~~~~~~~~--------~~~a~I~RrGA~~aL~~l~~~FG~  428 (441)
T PF12054_consen  393 ADHADAASEERE--------QKEARIQRRGAELALEQLAKRFGS  428 (441)
T ss_pred             ccccccccchhh--------hhhhHHHhcCHHHHHHHHHHHHhH
Confidence            00    000000        011244588899999999998884

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=81.33  E-value=68  Score=33.50  Aligned_cols=187  Identities=13%  Similarity=0.094  Sum_probs=105.5

Q ss_pred             hhcCCChhHHHHHHHHHHHHHhh--cCCCChHHHHHhhhhc--CCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHH
Q 007670           13 LNKLSDRDTYSQAAKELDSIAAT--VDPTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINS   86 (594)
Q Consensus        13 L~KLsDrDT~r~A~~eLD~LA~~--Lppe~lp~fLs~L~e~--~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~   86 (594)
                      ++||.|..+..-|++-|..|+..  ++++....++..|.+.  .++.-...|..++.+|..+.+-|  .+...=+.++..
T Consensus        48 ~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~  127 (262)
T PF14500_consen   48 CSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG  127 (262)
T ss_pred             HHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH
Confidence            46888888888889999998833  4566677788877653  34445678999999999998888  443333344444


Q ss_pred             ---HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc-------c--CCChh--HHHHHHHHHHHHHhhc
Q 007670           87 ---ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF-------T--EQDTN--AQVGAALCLAATIDAA  152 (594)
Q Consensus        87 ---IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~-------~--eq~k~--vQ~~Aa~ALaavvE~l  152 (594)
                         ++.+=|||-=.+  .+..-+-.+....   +...+..-||+.+.       .  .+++.  ...--..+|...+=+.
T Consensus       128 ~i~~~~gEkDPRnLl--~~F~l~~~i~~~~---~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~  202 (262)
T PF14500_consen  128 FIQLIDGEKDPRNLL--LSFKLLKVILQEF---DISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST  202 (262)
T ss_pred             HHHHhccCCCHHHHH--HHHHHHHHHHHhc---ccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence               334445554221  1121222222222   11225666666664       1  12331  1111122222222111


Q ss_pred             CCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC--cCCchHHHHHHHH
Q 007670          153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLL  208 (594)
Q Consensus       153 ~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~--~~pyf~~lm~~L~  208 (594)
                          ..+-+..+|-|+..|.+...-+|.-++.++...+..=+.  ..||...+-..|.
T Consensus       203 ----~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk  256 (262)
T PF14500_consen  203 ----PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK  256 (262)
T ss_pred             ----HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence                124456777788888888888998888888776643222  2366666655554

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=81.06  E-value=28  Score=43.69  Aligned_cols=104  Identities=12%  Similarity=0.113  Sum_probs=79.0

Q ss_pred             HHHhhcCCChh------H-HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch
Q 007670           10 NGLLNKLSDRD------T-YSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI   80 (594)
Q Consensus        10 l~~L~KLsDrD------T-~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL   80 (594)
                      .-+|++++|==      | ...-++.|..+.+++.++.+-..+.++......+.|..|-.+++.+-......  .+-..+
T Consensus       127 v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~  206 (1549)
T KOG0392|consen  127 VLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL  206 (1549)
T ss_pred             HHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH
Confidence            34566766532      1 22346788899999999888888888888877778888888777766654444  555788


Q ss_pred             HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670           81 TKIINSITRNFRDKNSALQATCISTVSSLSPRV  113 (594)
Q Consensus        81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      +.++.+++..|.|+|--||..++.++...+...
T Consensus       207 ~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~  239 (1549)
T KOG0392|consen  207 NLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ  239 (1549)
T ss_pred             HHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence            899999999999999999988887777666655

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=80.96  E-value=83  Score=34.54  Aligned_cols=207  Identities=12%  Similarity=0.128  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHhhcC------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhh
Q 007670           19 RDTYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF   91 (594)
Q Consensus        19 rDT~r~A~~eLD~LA~~Lp------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrL   91 (594)
                      ..-...|.+.+.-+..+-.      .-+++.|+-.=.+.. +..-..|.+|++++=.+.+.. .....-.-++..|+.-.
T Consensus        39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~-~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaia  117 (371)
T PF14664_consen   39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRD-NKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIA  117 (371)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhccc-CCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHH
Confidence            4456666676665554211      111222222212211 223467999999998887775 33333456677788888


Q ss_pred             cCCChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHH--HHHHH
Q 007670           92 RDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGR--MEVRL  167 (594)
Q Consensus        92 kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~--L~~RL  167 (594)
                      .+++-..|.+|.++|.-++-.-.+-.... -+++|+.++.+   ...+ .+-.++..++.-++.+. ..|+..  =++.+
T Consensus       118 e~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d---~~~~-~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l  193 (371)
T PF14664_consen  118 EHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID---GSFS-ISESLLDTLLYLLDSPRTRKYLRPGFDLESL  193 (371)
T ss_pred             hCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh---ccHh-HHHHHHHHHHHHhCCcchhhhhcCCccHHHH
Confidence            88999999999999887775542211112 67899999953   2222 33445566666665553 344422  23333


Q ss_pred             HHHhcCCc---------h-hhHHHHHHHHHHHHhc-CcCc--C-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          168 ERLLKSEV---------F-KAKAAGLVVVGSVIGS-GAVD--G-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       168 ~klL~s~~---------f-kaK~alL~aIGSiA~a-~~~~--~-pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +.-+...+         . +.+. ..-+|.++-.. .|-.  . +-| ..+..|.++|.-+.-.+|++..|.|..+-.+
T Consensus       194 ~apftd~~~~~~~~~~~~~~l~~-s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllri  270 (371)
T PF14664_consen  194 LAPFTDFHYRKIKDDRELERLQA-SAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI  270 (371)
T ss_pred             HHhhhhhhccccccchHHHHHHH-HHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence            33332221         1 1111 11233333332 3442  2 444 6789999999999889999999999988664

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=80.64  E-value=41  Score=35.18  Aligned_cols=115  Identities=14%  Similarity=0.112  Sum_probs=76.5

Q ss_pred             chHHHHHHHH-hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670           79 YITKIINSIT-RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA  157 (594)
Q Consensus        79 hLpkIL~~Iv-rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~  157 (594)
                      .|..|+..++ ..++-+|..||..+...||.++-.-. .....++..++..+ ...+..++..|..|+--++-.=+....
T Consensus        23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            5668887555 89999999999999999999875542 11122666666666 445777887666555444332222221


Q ss_pred             h---------hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670          158 G---------KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       158 ~---------yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~  195 (594)
                      .         .-..+..-+.+.|++.+..++..+...++-+.-.+..
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i  147 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI  147 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence            1         1235777788888888777888888888777765543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=80.58  E-value=37  Score=38.03  Aligned_cols=227  Identities=14%  Similarity=0.112  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHhhcCCCh---hHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCC-CCcchHHHHHHHHHHHhhh-
Q 007670            3 HALKTSVNGLLNKLSDR---DTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSD-KPGVRKECIHVIATLSNSH-   74 (594)
Q Consensus         3 ~~Lk~rvl~~L~KLsDr---DT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~-kp~~RKaaI~lLGvlae~h-   74 (594)
                      ++|-+.+++++.+-+..   .--|+-++.|-.+-..+-|-.   +..|...+.....+| +|..=-...-++|+|.... 
T Consensus        25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~  104 (435)
T PF03378_consen   25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC  104 (435)
T ss_dssp             HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence            45556666666653321   244555555444444432221   444444443333333 3444555666777774432 


Q ss_pred             -----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh----HHhHHHHHHHHccCCChhHHHHHHHHH
Q 007670           75 -----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF----VTMLKLLSDALFTEQDTNAQVGAALCL  145 (594)
Q Consensus        75 -----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~----~~~lkPL~eaL~~eq~k~vQ~~Aa~AL  145 (594)
                           .+..+-+.++|.+..-|+..=.-.--=+..-+++|-+....++.    ..+++||+.-.+-+..-++- +...-|
T Consensus       105 ~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP-alvrLL  183 (435)
T PF03378_consen  105 EADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP-ALVRLL  183 (435)
T ss_dssp             GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH-HHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC-cHHHHH
Confidence                 55566677777776666543222222223344445444431121    13777777666555555653 344457


Q ss_pred             HHHHhhcCCCcc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcCcCc-CCchHHHHHHHHhhhcC-CcHHHHH
Q 007670          146 AATIDAAQDPDA--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-GSGAVD-GSGLKGLVSCLLGFLSS-QDWAARK  220 (594)
Q Consensus       146 aavvE~l~~~i~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA-~a~~~~-~pyf~~lm~~L~e~L~s-eDw~lRK  220 (594)
                      .++++..+..+.  +++..++..+-||+.+.....  .....+.+|+ +...+. .||+..++..|-..|.+ .-....+
T Consensus       184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~  261 (435)
T PF03378_consen  184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVK  261 (435)
T ss_dssp             HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHH
T ss_pred             HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHH
Confidence            888887666653  689999999999998885443  2445677776 444444 59999999998888874 3344444


Q ss_pred             HHHHHHHHHHHH
Q 007670          221 AAAEALWRLAVV  232 (594)
Q Consensus       221 aAaDaLg~IA~a  232 (594)
                      .-+-.++.++..
T Consensus       262 ~fv~F~~~~~~~  273 (435)
T PF03378_consen  262 RFVVFLSLFAIK  273 (435)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444555555443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.14  E-value=45  Score=42.77  Aligned_cols=151  Identities=15%  Similarity=0.064  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCC-hHHHHHhhh-hcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCC
Q 007670           21 TYSQAAKELDSIAATVDPTL-LPTFLSCIL-STNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKN   95 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~-e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~D   95 (594)
                      +..+|+...+.++....... .+.|+..+. -...+..+.+|-+.+.-+-.++=.+   +..++...|.-.+.+.|.|.+
T Consensus      1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred             HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence            88899999999999986555 888998887 3344556777877666666554444   456778999999999999999


Q ss_pred             hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHH-HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670           96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQV-GAALCLAATIDAAQDPDAGKLGRMEVRLERLL  171 (594)
Q Consensus        96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~-~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL  171 (594)
                      -.||.-++.+|+-|-..--.+-...--++....+.......++. ||+.+|-++|=..++.....+++.+--+....
T Consensus      1583 i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred             HHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhc
Confidence            99999999888766443311100011223333332222333443 89999999999888766555555443333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	594
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-06
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-04
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 85/554 (15%), Positives = 159/554 (28%), Gaps = 169/554 (30%)

Query: 44  FLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCI 103
           FL   + T       + +     I      +N +    K   +++R        L+    
Sbjct: 93  FLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKY--NVSR--LQPYLKLR---- 141

Query: 104 STVSSLSPRVGASAFVT---ML---K--LLSDAL-----------------FTEQDTNAQ 138
             +  L P    +  V    +L   K  +  D                       ++   
Sbjct: 142 QALLELRP----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 139 V---GAALCLAATIDAAQDPDAGKLGRMEV-----RLERLLKSEVFKAKAAGLVVVGSVI 190
           V      L      +     D     ++ +      L RLLKS+ ++     L+V+ +V 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQ 254

Query: 191 GSGAVDGSGLKGLVSC-LLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249
            + A +   L     C +L  L+++     K   + L                  L   E
Sbjct: 255 NAKAWNAFNLS----CKIL--LTTRF----KQVTDFLSAATTTHISLDHHSMT--LTPDE 302

Query: 250 SKR-FDKMIEAWKQVPDLSEEA---SP------------PPQSLDPSKEDGSDRRYLTES 293
            K    K ++   +  DL  E    +P               + D  K    D+  LT  
Sbjct: 303 VKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTI 358

Query: 294 RSSSTKGL---ELKKR----SILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKV-DQKK 345
             SS   L   E +K     S+      PP +              +   +L  +     
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVF-----PPSA-------------HIPTILLSLIWFDVI 400

Query: 346 PSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHK---- 401
            SD    ++     SLV+     + + I +       K E + AL         H+    
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---------HRSIVD 451

Query: 402 -------LRSGSRVTPYNEE------SHEFTVSDNTE----------NLH-----IKHK- 432
                    S   + PY ++       H     ++ E          +       I+H  
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 433 -----------DCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGM-QSLETRVLGLE 480
                        + L   +  +   + +   L++ +  F+ + E  +  S  T +  L 
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LR 569

Query: 481 LAL---DEISYDLA 491
           +AL   DE  ++ A
Sbjct: 570 IALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 92/663 (13%), Positives = 165/663 (24%), Gaps = 224/663 (33%)

Query: 3   HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKE 62
           H +         +   +D  S      D+     D   +      ILS          +E
Sbjct: 5   HHMDFETGEH--QYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSK---------EE 50

Query: 63  CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TM 121
             H+I         S       ++++   R          +              FV  +
Sbjct: 51  IDHIIM--------SK------DAVSGTLR----------LFWTLLSKQEEMVQKFVEEV 86

Query: 122 LKL----LSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERL--LKSE 174
           L++    L   + TE                 D   + D     +  V RL+    L+  
Sbjct: 87  LRINYKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQA 143

Query: 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234
           + + + A  V++  V+GSG       K   + +              A +      V  K
Sbjct: 144 LLELRPAKNVLIDGVLGSG-------K---TWV--------------ALDVCLSYKVQCK 179

Query: 235 DAVPEFK------GKC------LKIFES--KRFDKMIEAWKQVPDLSEEASPPPQSLDPS 280
               +FK        C      L++ +    + D     W    D S   S     +   
Sbjct: 180 ---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHS---SNIKLRIHSI 230

Query: 281 KEDGSDRRYLTESR-------------SSSTKGLELK--------KRSILASKSTPPDSS 319
           +     RR L                 + +     L          + +    S    + 
Sbjct: 231 QA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 320 FPTTARKRGFLKKVSPAVLHKVDQKKPSDWRDQISA--PSGASLVDAHEDGTVLKIRNN- 376
                           ++L K    +P D   ++    P   S++        ++     
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-----AESIRDGLAT 343

Query: 377 -ENTK-----------------LPKPETKR-----ALFN-------------WSSDDK-- 398
            +N K                 L   E ++     ++F              W    K  
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 399 ----VHKLRSGSRVTPYNEESHEFTVS------------DNTENLH---------IKHKD 433
               V+KL   S V    ++  E T+S            +N   LH          K  D
Sbjct: 404 VMVVVNKLHKYSLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 434 CEDLSTIRNQ----------LVQIEQQQSS------LLDLLQRFI-------GRSESGMQ 470
            +DL                L  IE  +         LD   RF+         + +   
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASG 518

Query: 471 SLETRVLGLELALDEIS-----YDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTE 525
           S+   +  L+     I      Y+  V+   +                D L      + E
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDE 577

Query: 526 GRY 528
             +
Sbjct: 578 AIF 580

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 44/272 (16%), Positives = 80/272 (29%), Gaps = 14/272 (5%)

Query: 12  LLNKLSDRDTYSQ--AAKELDSIAATVDPTLLPTFLSCILSTNSSDK-PGVRKECIHVIA 68
             N  SD     +  A +   +IA  +    L   +   L   + DK   VR        
Sbjct: 208 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFT 267

Query: 69  TLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML--KLLS 126
            L  +       T ++ +     +D  + ++A     V      + A     ++  ++L 
Sbjct: 268 ELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327

Query: 127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK---SEVFKAKAAGL 183
                  D N  V +AL       +        +  +       LK    EV     + L
Sbjct: 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL 387

Query: 184 VVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV--EKDAVPEFK 241
             V  VIG   +     + L+  ++       W  R A  E +  LA     +    +  
Sbjct: 388 DCVNEVIGIRQLS----QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 242 GKCLKIFESKRFDKMIEAWKQVPDLSEEASPP 273
             C+       +     A   +  L E+    
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 12  LLNKLSDRDTY--SQAAKELDSIAATVDPT-LLPTFLSCILSTNSSDKPGVRKECIHVIA 68
            L +L D            LD +   +    L  + L  I+      K  VR   I  + 
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427

Query: 69  TLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASAFVTMLKLLSD 127
            L+    +  +  K+ +       D   A++    S +  L  + G   A  T++  +  
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487

Query: 128 ALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAK---AAGLV 184
                 D N            + +           M   + R+    V   +   A  L 
Sbjct: 488 MS---GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544

Query: 185 VVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230
            +G ++ +  +       +   L      QD   +  A EAL  L+
Sbjct: 545 KIGPILDNSTLQSE----VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 4   ALKTSVNGLLNKLSDRDTYS---QAAKELDSIAATVDP-----TLLPTFLSCILSTNSSD 55
           A+K  +      L   DT      AA +L   A  ++       ++P F +       S 
Sbjct: 160 AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS- 218

Query: 56  KPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115
              VR   +     ++           ++ ++ +   DK+  ++       + L   VG 
Sbjct: 219 ---VRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275

Query: 116 SAFVTML-----KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170
               T L      L+ D     +   +      C   + D  ++    ++      ++ L
Sbjct: 276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC---IKEL 332

Query: 171 LKSEVFKAK---AAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226
           +       K   A+ ++ +  ++G        ++ L+   L  L  +    R      L
Sbjct: 333 VSDANQHVKSALASVIMGLSPILGKDNT----IEHLLPLFLAQLKDECPEVRLNIISNL 387

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 6/221 (2%)

Query: 9   VNGLLNKLSDRDTY--SQAAKELDSIAATVDP-TLLPTFLSCILSTNSSDKPGVRKECIH 65
           +  +   +SD + +  S  A  +  ++  +     +   L   L+    + P VR   I 
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385

Query: 66  VIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLL 125
            +  ++    +      ++ +I     D    ++   I  +  L+ ++G   F   L  L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445

Query: 126 SDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVV 185
             A   +     +  A   L   ++      A     +  ++  +     +  +   L  
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 186 VGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226
           +  +      D    K ++  +L          R   A++L
Sbjct: 504 INVLSEVCGQD-ITTKHMLPTVLRMAGDPVANVRFNVAKSL 543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.9 bits (120), Expect = 1e-06
 Identities = 46/377 (12%), Positives = 109/377 (28%), Gaps = 25/377 (6%)

Query: 12  LLNKLSDRDTYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIH 65
           L + ++ ++  S   + LD +A  +           P+ L+C+L   +S +  VRK  I 
Sbjct: 138 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTII 197

Query: 66  VIATLSNSHN---LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
            +  L  S         I  +++ +++N     +     CI+ +S  +          ++
Sbjct: 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 257

Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAG 182
            L+      + D   +        + +          +  +   +   LK   +      
Sbjct: 258 PLVVKFCNVDDD-ELREYCIQAFESFVRRCPKEVYPHVSTI---INICLKYLTYDPNYNY 313

Query: 183 LVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKG 242
                      A  G                  W  R+AAA+ L  +     + +PEF  
Sbjct: 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373

Query: 243 KCLKIFESKRFDK-------MIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLTESRS 295
                  S+  ++       +  A+  +   +          D  ++  +    L     
Sbjct: 374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 433

Query: 296 SSTKGLELKKRSILASKSTPPDSSFPTTARKRG-----FLKKVSPAVLHKVDQKKPSDWR 350
           +  K L  + +           +                +  + P ++  ++ K  S   
Sbjct: 434 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 493

Query: 351 DQISAPSGASLVDAHED 367
              +      ++  H  
Sbjct: 494 KIDALSCLYVILCNHSP 510

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 40/214 (18%), Positives = 80/214 (37%), Gaps = 14/214 (6%)

Query: 36  VDPT-LLPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITKIINSITRNF- 91
           +DP  +L              K  +RKE + V+  L   +    +     +++++ +   
Sbjct: 7   LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT 66

Query: 92  RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE-QDTNAQVGAALCLAATID 150
           +D N  L A     ++ L+  +    F         +L  + ++    V  AL     ID
Sbjct: 67  KDSNVVLVAMAGKCLALLAKGLAKR-FSNYASACVPSLLEKFKEKKPNVVTALR--EAID 123

Query: 151 AAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI---GSGAVDGSGLKGLVSCL 207
           A     +  L   +  +   L ++    K+   + +   +      A++   LK L + L
Sbjct: 124 AIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 208 LGFLSSQDWAARKAAAEALWRLA-VVEKDAVPEF 240
           +  L+  D   R ++AEAL  L  ++   AV   
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPL 215

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 14/224 (6%)

Query: 17  SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLS--NSH 74
            + D     A         +      + L  ++     D   V K  I +I  ++     
Sbjct: 6   EEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED 65

Query: 75  NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQD 134
              P + K+ + + ++     +   A     ++   P +  S    M+ +L       + 
Sbjct: 66  LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKS----MIPVLFANY---RI 118

Query: 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA 194
            + +    +  A    A  +P        +     +L S+  + K   L  + ++   G 
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTALNFIEAM---GE 173

Query: 195 VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238
                +   +  ++  L   D   R +A EAL  LA +      
Sbjct: 174 NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 32/235 (13%)

Query: 6   KTSVNGLLNKLSDRDTY--SQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKEC 63
           K + + L   L D ++     +A+ L           +   +       S      R   
Sbjct: 22  KLNDDELFRLLDDHNSLKRISSARVLQLRG---GQDAVRLAIEFC----SDKNYIRRDIG 74

Query: 64  IHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLK 123
             ++  +         +  I+N++  N  DK++ ++AT I + +    +        +++
Sbjct: 75  AFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIESTAQRCKK-NPIYSPKIVE 131

Query: 124 LLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGL 183
                   ++ TN +   A  ++       D     L      L  LLK           
Sbjct: 132 QSQITA-FDKSTNVRRATAFAISV----INDKATIPL------LINLLKDPN-------G 173

Query: 184 VVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238
            V      +  ++      +  C +  L  ++   R  A   L      +K  + 
Sbjct: 174 DVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--DKRVLS 226

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 54/281 (19%), Positives = 102/281 (36%), Gaps = 47/281 (16%)

Query: 12  LLNKLSDRDTYSQAAKELDSIA--------ATVDPTLLPTFLSCILSTNSSDKPGVRKEC 63
            L +  +     ++A  L +IA          +    +P F+  +    SS+   V+++ 
Sbjct: 72  FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL----SSEFEDVQEQA 127

Query: 64  IHVIATLS-NSHNLSPYITK--IINSITRNFRDKNS-ALQATCISTVSSLS----PRVGA 115
           +  +  ++ +S     Y+    I+  + + F  +N   +    +  +S+L     P    
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187

Query: 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-----DAGKLGRMEVRLERL 170
           +     L +LS  L    DT+    A   L+   D   D      DAG   R    L  L
Sbjct: 188 AKVSPCLNVLSW-LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRR----LVEL 242

Query: 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGL---KGLVSCLLGFLSSQDWAARKAAAEALW 227
           L    +K  +  L  VG+ I +G    + +      +  LL  LSS   + +K A   + 
Sbjct: 243 LMHNDYKVVSPALRAVGN-IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 228 RLA---------VVEKDAVPEFKGKCLKIFESKRFDKMIEA 259
            +          V++ +  P      + I ++  F    EA
Sbjct: 302 NITAGNRAQIQTVIDANIFP----ALISILQTAEFRTRKEA 338

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 9/192 (4%)

Query: 9   VNGLLNKL--SDRDTYSQAAKELDSIAATVDPTLLPT--FLSCILSTNSSDKPGVRKE-- 62
           +  L  KL  +  D   + A E+ S              F   +       K        
Sbjct: 16  LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQA 75

Query: 63  CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
             H+    + S ++ PYI +++ +I  N  +K+  +Q+    T+ S+   V   A   +L
Sbjct: 76  VAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL 135

Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL---KSEVFKAK 179
             L++A+        ++      +A +DAA+D  A ++  +   L   +   K EV  A 
Sbjct: 136 PHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAA 195

Query: 180 AAGLVVVGSVIG 191
            A +      + 
Sbjct: 196 TAAMTKATETVD 207

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Length = 257

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 1   MAHALKTSVNGLLNKLSDRDTYSQAA--KELDSIAATVDPTLLPTFLSCILSTNSSDKPG 58
                +  V    N+L      ++     ++          L   FL  +LS        
Sbjct: 9   KTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNME 68

Query: 59  VRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113
           VRK+ +  +  +         +  +IN ++   RD ++ +    I    S+    
Sbjct: 69  VRKQVVAFVEQVCKVK--VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNG 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	594
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.83
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.81
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.77
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.71
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.66
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.65
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.62
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.61
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.61
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.58
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.56
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.55
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.54
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.54
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.52
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.52
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.43
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.3
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.29
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.28
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.28
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.23
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.22
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.22
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.2
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.19
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.17
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.17
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.17
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.13
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.08
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.04
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.03
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.98
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.91
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.9
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.8
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.77
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.77
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.75
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	98.75
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.73
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.71
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	98.71
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.64
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.64
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.64
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.52
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.51
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.49
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.48
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.46
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.46
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.39
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.37
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.35
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.33
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.33
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.31
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.28
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.22
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.21
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.2
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.18
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.12
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.12
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.11
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.02
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	97.94
3nmz_A	458	APC variant protein; protein-protein complex, arma	97.93
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.86
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.65
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.56
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.56
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.42
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.38
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.36
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.17
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.16
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	97.15
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.12
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.11
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	96.98
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.84
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	96.81
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.71
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.66
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.64
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.59
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.17
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.04
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.01
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.01
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	95.93
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.47
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	95.42
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.06
3grl_A	651	General vesicular transport factor P115; vesicle t	94.88
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.03
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	93.0
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	92.2
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	91.48
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	89.35
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.98
3grl_A	651	General vesicular transport factor P115; vesicle t	85.73
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	83.54
1w9c_A	321	CRM1 protein, exportin 1; nuclear protein, nuclear	82.16
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	80.92

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.8e-20  Score=185.43  Aligned_cols=196  Identities=12%  Similarity=0.050  Sum_probs=170.8

Q ss_pred             hhhcCCCCCCcchHHHHHHHHH-HHhhh--cc--ccchHHHHHHHHhhh-cCCChhHHHHHHHHHHhhchhhh-cc---h
Q 007670           48 ILSTNSSDKPGVRKECIHVIAT-LSNSH--NL--SPYITKIINSITRNF-RDKNSALQATCISTVSSLSPRVG-AS---A  117 (594)
Q Consensus        48 L~e~~ss~kp~~RKaaI~lLGv-lae~h--~i--sphLpkIL~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~-~~---~  117 (594)
                      +.+..++.||..||+++..|+. ++++|  +.  ......++..+.+.| +|++..||.+|+.++|+||+.+. ..   +
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4455578999999999999999 99888  54  456678999999999 89999999999999999999885 21   3


Q ss_pred             hH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670          118 FV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       118 ~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~  195 (594)
                      .. .++++|++.+ +++.+.|+.+|..||+++++.+++... +||..++++|+..|++++.++|.+++.+|++++...+.
T Consensus       101 y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          101 YVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            22 3888888888 788999999999999999999865332 45999999999999999999999999999999977654


Q ss_pred             ----cCCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC-ccchhhhHH
Q 007670          196 ----DGSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD-AVPEFKGKC  244 (594)
Q Consensus       196 ----~~pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd-~f~py~~~~  244 (594)
                          +.+|+ +.+||.|..+|.+++-.+|.+|.++|+.|+.++|+ .|.||...+
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L  234 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL  234 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence                45899 99999999999999999999999999999999995 799997653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.83  E-value=7.2e-20  Score=178.24  Aligned_cols=208  Identities=18%  Similarity=0.208  Sum_probs=175.9

Q ss_pred             CCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhh-cCCChhHHHHHHHHHHhhchh
Q 007670           37 DPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNF-RDKNSALQATCISTVSSLSPR  112 (594)
Q Consensus        37 ppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~  112 (594)
                      ||.. +..|-..+.+...+.+|..|++++..|+.++++|  +..+++.++++.+.++| +|++..||.+++.++|.|+..
T Consensus         8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~   87 (242)
T 2qk2_A            8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG   87 (242)
T ss_dssp             SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            4444 5555556777777899999999999999999996  66778899999999999 599999999999999999988


Q ss_pred             hhcc--hhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670          113 VGAS--AFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV  189 (594)
Q Consensus       113 l~~~--~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSi  189 (594)
                      +...  +.. .++++|++.| +++++.++.+|+.||.++++..+      +..+++.|...|++.+.++|..++..|+.+
T Consensus        88 l~~~~~~~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A           88 LAKRFSNYASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARA  160 (242)
T ss_dssp             HGGGGHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            7532  222 3888888888 78999999999999999999753      678999999999999999999999999997


Q ss_pred             HhcC-c--CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH
Q 007670          190 IGSG-A--VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK  255 (594)
Q Consensus       190 A~a~-~--~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK  255 (594)
                      +... .  .+.+|++.+||.|..+|.+.+|.+|++|.++|+.|+.++| +.|.||...    |...|.+|
T Consensus       161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~----L~~~~~~~  226 (242)
T 2qk2_A          161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD----VDPLKMAK  226 (242)
T ss_dssp             HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT----SCHHHHHH
T ss_pred             HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh----cCHHHHHH
Confidence            7543 2  2459999999999999999999999999999999999999 468888754    35555555

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.81  E-value=2.6e-19  Score=202.94  Aligned_cols=223  Identities=16%  Similarity=0.144  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL   98 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~V   98 (594)
                      .++.|+..|+.++..++.+.++.+++.|.+...+++|.+|.+++++||.+++++  .+.||++.+++.+++.|+|+++.|
T Consensus       337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V  416 (852)
T 4fdd_A          337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV  416 (852)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            378999999999999986569999999999888899999999999999999998  777999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcch----hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q 007670           99 QATCISTVSSLSPRVGASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE  174 (594)
Q Consensus        99 R~Ac~~ALG~LAe~l~~~~----~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~  174 (594)
                      |.+|++++|.+++++....    ...+++.|+..| .++++.++..||.||..++++.++.+.+|++.|++.|.++|+..
T Consensus       417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~  495 (852)
T 4fdd_A          417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY  495 (852)
T ss_dssp             HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh
Confidence            9999999999999985432    223667777777 57899999999999999999998888899999999999999877


Q ss_pred             chhhHHHHHHHHHHHHhcCcC-cC--CchHHHHHHHHh---hhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670          175 VFKAKAAGLVVVGSVIGSGAV-DG--SGLKGLVSCLLG---FLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL  245 (594)
Q Consensus       175 ~fkaK~alL~aIGSiA~a~~~-~~--pyf~~lm~~L~e---~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m  245 (594)
                      ..+.+..++++|++++.+.+. +.  +|++.+||.|.+   .+.+++..+| .++++|+.|+.++|+.|.||...++
T Consensus       496 ~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~  571 (852)
T 4fdd_A          496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVY  571 (852)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            767777789999999965443 32  699999999985   4556777776 7899999999999999999987754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.77  E-value=1.4e-17  Score=185.53  Aligned_cols=244  Identities=11%  Similarity=0.117  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChh
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA   97 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~   97 (594)
                      .++.|.+.|+.++..++.+.++.+++.+.+...+.+|..|++++.+||.+++++   .+.+|++.|++.+++.++|+++.
T Consensus       347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~  426 (861)
T 2bpt_A          347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ  426 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            667899999999999986669999999999988999999999999999999876   57899999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcc----h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC----CCcchhHHHHHHHHH
Q 007670           98 LQATCISTVSSLSPRVGAS----A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ----DPDAGKLGRMEVRLE  168 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~----~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~----~~i~~yL~~L~~RL~  168 (594)
                      ||.++++++|++++++...    . ...++++|+..| +++ +.++..||.||..+++..+    +.+.+|++.+++.|+
T Consensus       427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~  504 (861)
T 2bpt_A          427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI  504 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            9999999999999998531    1 334788888887 444 8899999999999999976    445699999999999


Q ss_pred             HHhcCC--chhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcC---------------CcHHHHHHHHHHHHHHH
Q 007670          169 RLLKSE--VFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSS---------------QDWAARKAAAEALWRLA  230 (594)
Q Consensus       169 klL~s~--~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~s---------------eDw~lRKaAaDaLg~IA  230 (594)
                      ++|++.  +..+|.+++.+|+.++...+. ..+|+..++|.+.+.|..               +...+|..++++|+.|+
T Consensus       505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~  584 (861)
T 2bpt_A          505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI  584 (861)
T ss_dssp             HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence            999854  367899999999999966554 458999988888887752               24678999999999999


Q ss_pred             HHcCCccchhhhHHHHH----HHhcc---hhH-HHHHHhhcCCC
Q 007670          231 VVEKDAVPEFKGKCLKI----FESKR---FDK-MIEAWKQVPDL  266 (594)
Q Consensus       231 ~a~gd~f~py~~~~m~s----LEs~R---fDK-~i~lWk~i~~v  266 (594)
                      ...|+.+.||...+|..    ++...   ..+ ++.+|..+...
T Consensus       585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~  628 (861)
T 2bpt_A          585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS  628 (861)
T ss_dssp             HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHH
Confidence            99998899998877743    43332   222 67777766644

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.71  E-value=4.2e-16  Score=174.01  Aligned_cols=226  Identities=12%  Similarity=0.127  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChh
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA   97 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~   97 (594)
                      .++.|+..|..++..++.+.++.+++.+.+...+++|.+|.+++.+||.+++++   .+.+|++.++|.+++.|+|++..
T Consensus       344 ~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~  423 (876)
T 1qgr_A          344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            778999999999999985559999999998888899999999999999999876   46789999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcc----h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--------------CCcch
Q 007670           98 LQATCISTVSSLSPRVGAS----A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--------------DPDAG  158 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~----~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~--------------~~i~~  158 (594)
                      ||.+|++++|.+++++...    + ...++..|+..| .+ ++.++..|+.||..+++.++              +.+.+
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~  501 (876)
T 1qgr_A          424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS  501 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT
T ss_pred             HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH
Confidence            9999999999999998532    2 223667777766 44 48899999999999999864              33578


Q ss_pred             hHHHHHHHHHHHhcCC---chhhHHHH-----------------------------------------------------
Q 007670          159 KLGRMEVRLERLLKSE---VFKAKAAG-----------------------------------------------------  182 (594)
Q Consensus       159 yL~~L~~RL~klL~s~---~fkaK~al-----------------------------------------------------  182 (594)
                      |++.+++.|.+++...   ....+..+                                                     
T Consensus       502 ~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~  581 (876)
T 1qgr_A          502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQ  581 (876)
T ss_dssp             THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Confidence            9999999999999754   12233333                                                     


Q ss_pred             ---HHHHHHHHhcCc--CcCCchHHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH
Q 007670          183 ---LVVVGSVIGSGA--VDGSGLKGLVSCLLGFLSSQD--WAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF  248 (594)
Q Consensus       183 ---L~aIGSiA~a~~--~~~pyf~~lm~~L~e~L~seD--w~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL  248 (594)
                         +.+++.++.+-+  .+.||++.+|+.|...|.+..  |.+|..|+.+|+.|+...|+.|.||...++..|
T Consensus       582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l  654 (876)
T 1qgr_A          582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL  654 (876)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence               344444443333  345889899999999888764  689999999999999999989999988877543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.66  E-value=1.1e-15  Score=179.90  Aligned_cols=243  Identities=14%  Similarity=0.154  Sum_probs=195.3

Q ss_pred             HHHHHHhhcCC--ChhHHHHHHHHHHHHHhh----cCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670            7 TSVNGLLNKLS--DRDTYSQAAKELDSIAAT----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI   80 (594)
Q Consensus         7 ~rvl~~L~KLs--DrDT~r~A~~eLD~LA~~----Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL   80 (594)
                      +.+.+.|.++.  |.|.++.|+..|......    +++.....++..|.+...++++.+|++|+++|+.+++.+.- +++
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~   84 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV   84 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence            45677888884  667889998888775432    23333566777777777788999999999999999987622 789


Q ss_pred             HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---------hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670           81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA  151 (594)
Q Consensus        81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---------~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~  151 (594)
                      +.|++.++..|.|++..||.+|+.+|+.++..+...         ....+++.|+..|.+..+..++.+|+.+|..+++.
T Consensus        85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988533         12238888888883246788999999999999998


Q ss_pred             cCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Q 007670          152 AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLA  230 (594)
Q Consensus       152 l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~se-Dw~lRKaAaDaLg~IA  230 (594)
                      .+..+.+|++.+++.|+.+|.+++..+|..++.+|++++...+.  ..|+.+|+.|.++|..+ ++.+|..|+++|+.|+
T Consensus       165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~  242 (1230)
T 1u6g_C          165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  242 (1230)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999865433  23566778888877654 4689999999999999


Q ss_pred             HHcCCccchhhhHHHH-HHHhcc
Q 007670          231 VVEKDAVPEFKGKCLK-IFESKR  252 (594)
Q Consensus       231 ~a~gd~f~py~~~~m~-sLEs~R  252 (594)
                      ...|+.|.||...++. .++.+.
T Consensus       243 ~~~~~~~~~~l~~l~~~ll~~l~  265 (1230)
T 1u6g_C          243 RQAGHRIGEYLEKIIPLVVKFCN  265 (1230)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHS
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999988885 444443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.65  E-value=4.4e-15  Score=165.44  Aligned_cols=252  Identities=13%  Similarity=0.138  Sum_probs=200.6

Q ss_pred             hcCCChh--HHHHHHHHHHHHHhhcC-----CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------ccccch
Q 007670           14 NKLSDRD--TYSQAAKELDSIAATVD-----PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSPYI   80 (594)
Q Consensus        14 ~KLsDrD--T~r~A~~eLD~LA~~Lp-----pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------~isphL   80 (594)
                      ..|.|.+  -+..|+..|-.++..++     ...++.+++.|.+...++ +.+|.++..+|+.+++.+      .+.||+
T Consensus       418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~  496 (861)
T 2bpt_A          418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY  496 (861)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            3445544  45667778888887763     334888888887776654 889999999999998863      578999


Q ss_pred             HHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcch---hHHhHHHHHHHHcc--------------CCChhHHHHH
Q 007670           81 TKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASA---FVTMLKLLSDALFT--------------EQDTNAQVGA  141 (594)
Q Consensus        81 pkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~---~~~~lkPL~eaL~~--------------eq~k~vQ~~A  141 (594)
                      +.|++.+++.+++  ++..||.+++.+++.++.......   ...+++++++.|..              +....++..+
T Consensus       497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  576 (861)
T 2bpt_A          497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence            9999999999985  447999999999999999885432   12377778777742              1245577899


Q ss_pred             HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcCCcHHHH
Q 007670          142 ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF-KAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSSQDWAAR  219 (594)
Q Consensus       142 a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~f-kaK~alL~aIGSiA~a~~-~~~pyf~~lm~~L~e~L~seDw~lR  219 (594)
                      +.||..+++.++..+.+|++.+++.+..+|++... .++..++.+|++++.+.+ .+.||++.++|.|..+|.++++.+|
T Consensus       577 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr  656 (861)
T 2bpt_A          577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS  656 (861)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHH
Confidence            99999999999988889999999999999988866 788999999999996654 4679999999999999998899999


Q ss_pred             HHHHHHHHHHHHHcCCccchhhhHHHHHHH-hc---chhH-----HHHHHhhcCCC
Q 007670          220 KAAAEALWRLAVVEKDAVPEFKGKCLKIFE-SK---RFDK-----MIEAWKQVPDL  266 (594)
Q Consensus       220 KaAaDaLg~IA~a~gd~f~py~~~~m~sLE-s~---RfDK-----~i~lWk~i~~v  266 (594)
                      ..|+.+|+.|+...|+.|.||...++..+- ..   ..|.     ++.+|..|...
T Consensus       657 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence            999999999999999999999988885432 22   1222     66666666543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.62  E-value=3.9e-15  Score=158.24  Aligned_cols=225  Identities=16%  Similarity=0.160  Sum_probs=163.0

Q ss_pred             HHHHHHhhcC-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccc--c
Q 007670            7 TSVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS--P   78 (594)
Q Consensus         7 ~rvl~~L~KL-sDrD--T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~is--p   78 (594)
                      ..++..+.++ .|.+  .++.|++.|..|+..++++. .+.+++.+.....++++.+|++++.+||.++...  ...  +
T Consensus       241 ~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  320 (588)
T 1b3u_A          241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV  320 (588)
T ss_dssp             HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence            3344444444 3433  56677777777777665433 2333444444444566777887777777777665  111  5


Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG  158 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~  158 (594)
                      +++.++|.+.+.++|++..||.+++.+++.++..+.+......+.|++..++.+.++.|+.+|+.+|..+++..+..  .
T Consensus       321 ~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~  398 (588)
T 1b3u_A          321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q  398 (588)
T ss_dssp             HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H
Confidence            67778888888888888888888888888887777443322345566666667888999999999999999876532  3


Q ss_pred             hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670          159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD  235 (594)
Q Consensus       159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd  235 (594)
                      +.+.++|.|.+++++++.+++.+++.+|+.++.. +..+  +.+.++|.+..+|.+++|.+|.+|+.+|+.++...|+
T Consensus       399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  474 (588)
T 1b3u_A          399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK  474 (588)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            5677899999999999999999999999999854 3332  2356899999999999999999999999999998774

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.61  E-value=6.4e-15  Score=170.21  Aligned_cols=246  Identities=10%  Similarity=0.120  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC------CCCCcchHHHHHHHHHHHhhh-----cccc-----chHHHH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS------SDKPGVRKECIHVIATLSNSH-----NLSP-----YITKII   84 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s------s~kp~~RKaaI~lLGvlae~h-----~isp-----hLpkIL   84 (594)
                      .+++|.+.|+.++..++...+++++..+.+.++      +++|..|.+|+++||.++++.     .+.+     .+..++
T Consensus       377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l  456 (960)
T 1wa5_C          377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (960)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence            677999999999999984338888888766654      678999999999999998752     2222     566654


Q ss_pred             -HHHHhhhcCC---ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-------
Q 007670           85 -NSITRNFRDK---NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-------  153 (594)
Q Consensus        85 -~~IvrrLkD~---Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~-------  153 (594)
                       ..|...|+|+   .+.||.+||+++|++++++..+-...++.-++..| .+.++.||..||+||..++|...       
T Consensus       457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~  535 (960)
T 1wa5_C          457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAF  535 (960)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred             HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccc
Confidence             5678888999   88999999999999999983221223555566666 56789999999999999999643       


Q ss_pred             ----CCcchhHHHHHHHHHHHhcCCc-----hhhHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhc-----CCcHHH
Q 007670          154 ----DPDAGKLGRMEVRLERLLKSEV-----FKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLS-----SQDWAA  218 (594)
Q Consensus       154 ----~~i~~yL~~L~~RL~klL~s~~-----fkaK~alL~aIGSiA~a~-~~~~pyf~~lm~~L~e~L~-----seDw~l  218 (594)
                          +.+.||++.|+++|+++|+..+     ......++.+|++++.+. ..+.||++.+|+.|...+.     .++..+
T Consensus       536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~  615 (960)
T 1wa5_C          536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF  615 (960)
T ss_dssp             SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence                3357999999999999998741     224467999999998654 4467999999999998875     247788


Q ss_pred             HHHHHHHHHHHHHHcC-CccchhhhHHHH----HHHhcc--hhH-HHHHHhhcCCCC
Q 007670          219 RKAAAEALWRLAVVEK-DAVPEFKGKCLK----IFESKR--FDK-MIEAWKQVPDLS  267 (594)
Q Consensus       219 RKaAaDaLg~IA~a~g-d~f~py~~~~m~----sLEs~R--fDK-~i~lWk~i~~v~  267 (594)
                      +..++|+|+.|+.+.+ +.+.+|...++.    +|++.-  |-. ++++|..+-...
T Consensus       616 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            8889999999999855 677777766664    444332  222 788877766543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.61  E-value=3.2e-14  Score=158.86  Aligned_cols=251  Identities=13%  Similarity=0.178  Sum_probs=196.2

Q ss_pred             hcCCChh--HHHHHHHHHHHHHhhcCC-----CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------------
Q 007670           14 NKLSDRD--TYSQAAKELDSIAATVDP-----TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------------   74 (594)
Q Consensus        14 ~KLsDrD--T~r~A~~eLD~LA~~Lpp-----e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------------   74 (594)
                      .-|.|.+  .+..|+..|..++..+++     ..++.+++.|.....+. +.+|.+++.+|+.+++.+            
T Consensus       415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~  493 (876)
T 1qgr_A          415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEE  493 (876)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            3446655  567899999999998764     34888888887777664 789999999999998764            


Q ss_pred             ----ccccchHHHHHHHHhhhcCCC---hhHHHHHHHHHHhhchhhhcchh---HHhHHHHHHHHcc----------CCC
Q 007670           75 ----NLSPYITKIINSITRNFRDKN---SALQATCISTVSSLSPRVGASAF---VTMLKLLSDALFT----------EQD  134 (594)
Q Consensus        75 ----~isphLpkIL~~IvrrLkD~D---s~VR~Ac~~ALG~LAe~l~~~~~---~~~lkPL~eaL~~----------eq~  134 (594)
                          .+.||++.|++.+.+.+.+++   ..||.++.++++.++..+.....   ..++.++++.+..          +.+
T Consensus       494 ~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d  573 (876)
T 1qgr_A          494 PATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSD  573 (876)
T ss_dssp             CCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTH
T ss_pred             ccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence                388999999999999999874   58999999999999998854321   1266666666531          222


Q ss_pred             ----hhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHHhc-CcCcCCchHHHHHH
Q 007670          135 ----TNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLLKSEV--FKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSC  206 (594)
Q Consensus       135 ----k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~klL~s~~--fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~  206 (594)
                          +.++..++.||..+++.++ +...+|++.++++|+++|++..  ..++..++.+|+.++.. +..+.||++.+++.
T Consensus       574 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  653 (876)
T 1qgr_A          574 RIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPF  653 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                4567889999999999998 7778999999999999998874  35788899999999965 44577999999999


Q ss_pred             HHhhhcCC-cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH-Hhcch---hH-----HHHHHhhcCC
Q 007670          207 LLGFLSSQ-DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF-ESKRF---DK-----MIEAWKQVPD  265 (594)
Q Consensus       207 L~e~L~se-Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL-Es~Rf---DK-----~i~lWk~i~~  265 (594)
                      |...|.+. ++.+|.+|+.+|+.|+...|+.+.||...+|..+ +...-   |.     ++.+|..|..
T Consensus       654 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~  722 (876)
T 1qgr_A          654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence            99999876 8999999999999999999999999998888543 33221   21     6666666653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.58  E-value=1.6e-13  Score=141.31  Aligned_cols=227  Identities=11%  Similarity=0.152  Sum_probs=179.1

Q ss_pred             hHHHHHHHHHHHHHhhc----CCCCh-HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH-HHHHHHHhhh
Q 007670           20 DTYSQAAKELDSIAATV----DPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRNF   91 (594)
Q Consensus        20 DT~r~A~~eLD~LA~~L----ppe~l-p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp-kIL~~IvrrL   91 (594)
                      +.+..|++.|-.++..+    +...+ ..++..|.+...++++.+|+.++.+|+.+++.+  .+.+|++ .+++.+...+
T Consensus       189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (462)
T 1ibr_B          189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (462)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777766644322    22222 335777777777888999999999999999988  7889999 9999999999


Q ss_pred             cCCChhHHHHHHHHHHhhchhhh-----------------cc------h-hHHhHHHHHHHHcc------CCChhHHHHH
Q 007670           92 RDKNSALQATCISTVSSLSPRVG-----------------AS------A-FVTMLKLLSDALFT------EQDTNAQVGA  141 (594)
Q Consensus        92 kD~Ds~VR~Ac~~ALG~LAe~l~-----------------~~------~-~~~~lkPL~eaL~~------eq~k~vQ~~A  141 (594)
                      +|.+..||..+++.++.+++...                 ..      + ...+++.|+..|..      +.+..+..+|
T Consensus       269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence            99999999999999999988641                 00      0 11255555555531      2245678899


Q ss_pred             HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-C-cCCchHHHHHHHHhhhcCCcHHHH
Q 007670          142 ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-V-DGSGLKGLVSCLLGFLSSQDWAAR  219 (594)
Q Consensus       142 a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~-~~pyf~~lm~~L~e~L~seDw~lR  219 (594)
                      +.||..+++..++   ..++.+++.+...|++++.+.|.+++.++|+++.... . ..++++.++|.|..+|.++++.+|
T Consensus       349 ~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr  425 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR  425 (462)
T ss_dssp             HHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            9999999999874   5788899999999999999999999999999885332 2 358899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcc--chhhhHHHHHHH
Q 007670          220 KAAAEALWRLAVVEKDAV--PEFKGKCLKIFE  249 (594)
Q Consensus       220 KaAaDaLg~IA~a~gd~f--~py~~~~m~sLE  249 (594)
                      .+|+.+|+.++...++.+  .+|...+|..|-
T Consensus       426 ~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll  457 (462)
T 1ibr_B          426 DTAAWTVGRICELLPEAAINDVYLAPLLQCLI  457 (462)
T ss_dssp             HHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            999999999999887654  578888886543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.56  E-value=3.3e-14  Score=167.22  Aligned_cols=229  Identities=14%  Similarity=0.205  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHhhcCCC---------ChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHH
Q 007670           21 TYSQAAKELDSIAATVDPT---------LLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSIT   88 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe---------~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Iv   88 (594)
                      .+..|...|..++..++++         ..+.+++.|.+... ++++.+|.+++.+|+.+++..  .+.||++.+++.+.
T Consensus       102 vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~  181 (1230)
T 1u6g_C          102 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL  181 (1230)
T ss_dssp             HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            5678899999999999876         25666666666655 577899999999999999876  78899999999999


Q ss_pred             hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 007670           89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE  168 (594)
Q Consensus        89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~  168 (594)
                      ..|.|+++.||.+++.+++.++....+.-+..++..|+..|..+.+..+..+|+.||..+++..+....+|++.+++-++
T Consensus       182 ~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll  261 (1230)
T 1u6g_C          182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV  261 (1230)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999875433334788888888655445566788999999999988877899999999999


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcC----------------------------------
Q 007670          169 RLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSS----------------------------------  213 (594)
Q Consensus       169 klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf~~lm~~L~e~L~s----------------------------------  213 (594)
                      +.+..++..++..++.+++.++..-+ ++.||++.+++.+..++..                                  
T Consensus       262 ~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  341 (1230)
T 1u6g_C          262 KFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD  341 (1230)
T ss_dssp             HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccc
Confidence            99998888899999999999997654 4569999999999887741                                  


Q ss_pred             ---CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670          214 ---QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       214 ---eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE  249 (594)
                         ..|.+|++|+++|+.++...++.|.||...++..+-
T Consensus       342 ~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~  380 (1230)
T 1u6g_C          342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI  380 (1230)
T ss_dssp             ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence               128899999999999999878889999988887654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.55  E-value=4.9e-14  Score=149.77  Aligned_cols=224  Identities=9%  Similarity=0.051  Sum_probs=173.8

Q ss_pred             HHHHhhcC-C--ChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHH
Q 007670            9 VNGLLNKL-S--DRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKII   84 (594)
Q Consensus         9 vl~~L~KL-s--DrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL   84 (594)
                      ++..|..+ .  |...+..|++.|..++..++++. .+.+++.+.....++.+..|..++.+|+.++...- ..+.+.++
T Consensus        88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-~~~~~~l~  166 (588)
T 1b3u_A           88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELR  166 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            44444444 2  33478899999999999998765 34455555555556678889999999999876541 13578899


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRME  164 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~  164 (594)
                      |.+.+.++|+++.||.+++.++|.+++.+........+.|++..++.+.+..+..+|+.||..+.+..++.  .+.+.++
T Consensus       167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~  244 (588)
T 1b3u_A          167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVM  244 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence            99999999999999999999999999988543333344555555557888999999999999999987642  3566788


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCc
Q 007670          165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDA  236 (594)
Q Consensus       165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~  236 (594)
                      +.+.++++.++..+|.+++.++|.++...+. ..+.+.+++.+...+.+++|.+|.+|+.+|+.++...+..
T Consensus       245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  315 (588)
T 1b3u_A          245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD  315 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence            8888999999999999999999998854221 1244668899999999999999999999999999987753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.54  E-value=2.5e-13  Score=153.95  Aligned_cols=231  Identities=14%  Similarity=0.113  Sum_probs=188.0

Q ss_pred             ChhHHHHHHHHHHHHHhhcCC---CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhh
Q 007670           18 DRDTYSQAAKELDSIAATVDP---TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRN   90 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lpp---e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~Ivrr   90 (594)
                      |.+..+.|++.|..|+...|.   ..+..++..+.....+.++.+|..++..+..+++..    ++.||+++++|.+++.
T Consensus       228 ~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~  307 (852)
T 4fdd_A          228 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNG  307 (852)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence            444788899999999987652   125556666666666778899999999999998742    6889999999999999


Q ss_pred             h-----------cC-----------CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670           91 F-----------RD-----------KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAAT  148 (594)
Q Consensus        91 L-----------kD-----------~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaav  148 (594)
                      +           .|           .+-.||.++..+++.|+..+.+.....+++-|.+.| .+.+..+..+|+.||..+
T Consensus       308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l-~~~~~~~R~aa~~alg~i  386 (852)
T 4fdd_A          308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHHEWVVKESGILVLGAI  386 (852)
T ss_dssp             TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHT
T ss_pred             cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            8           45           345789999999999999885432333444444444 677899999999999999


Q ss_pred             HhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC-cC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007670          149 IDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEAL  226 (594)
Q Consensus       149 vE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~-~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaL  226 (594)
                      .++.++...+|++.+++-++.+|++++..++.++..++|.++... .. ..+|+..+|+.|...|.++++.+|.+|+.+|
T Consensus       387 ~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL  466 (852)
T 4fdd_A          387 AEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF  466 (852)
T ss_dssp             TTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            998876667899999999999999999999999999999888542 23 3599999999999999999999999999999


Q ss_pred             HHHHHHcCCccchhhhHHHHHHH
Q 007670          227 WRLAVVEKDAVPEFKGKCLKIFE  249 (594)
Q Consensus       227 g~IA~a~gd~f~py~~~~m~sLE  249 (594)
                      +.++...++.+.||...++..|-
T Consensus       467 ~~l~~~~~~~l~~~l~~ll~~L~  489 (852)
T 4fdd_A          467 ATLEEEACTELVPYLAYILDTLV  489 (852)
T ss_dssp             HHHHHHHGGGGGGGHHHHHHHHH
T ss_pred             HHHHHHhhHhhHhHHHHHHHHHH
Confidence            99999888889999988885443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.54  E-value=2.4e-13  Score=140.13  Aligned_cols=259  Identities=15%  Similarity=0.178  Sum_probs=192.5

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC-ChHHHHHhhhhcCCCC--CCcchHHHHHHHHHHHhhh---ccc
Q 007670            4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPT-LLPTFLSCILSTNSSD--KPGVRKECIHVIATLSNSH---NLS   77 (594)
Q Consensus         4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe-~lp~fLs~L~e~~ss~--kp~~RKaaI~lLGvlae~h---~is   77 (594)
                      .+|+.++..|..- +... +.+...|-.||...-|+ ..|-+++.|.+...++  ++.+|..++.+|+.+++.+   .+.
T Consensus        90 ~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~  167 (462)
T 1ibr_B           90 EVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (462)
T ss_dssp             HHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred             HHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence            4667777766542 3335 77888899999886443 4666666666655556  7889999999999999864   688


Q ss_pred             cchHHHHHHHHhhhcCC--ChhHHHHHHHHHHhhchhhhcch----hHHh-HHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670           78 PYITKIINSITRNFRDK--NSALQATCISTVSSLSPRVGASA----FVTM-LKLLSDALFTEQDTNAQVGAALCLAATID  150 (594)
Q Consensus        78 phLpkIL~~IvrrLkD~--Ds~VR~Ac~~ALG~LAe~l~~~~----~~~~-lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE  150 (594)
                      +|++.+++.+.+.|+|+  +..||.+++.+++.+.+++.+..    +..+ +..|.. +..+.+..+...++.||..+++
T Consensus       168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~  246 (462)
T 1ibr_B          168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS  246 (462)
T ss_dssp             GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999  68999999999999877653211    1223 444444 4467788999999999999999


Q ss_pred             hcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC------------------cCc----CCchHHHHHHH
Q 007670          151 AAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG------------------AVD----GSGLKGLVSCL  207 (594)
Q Consensus       151 ~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~------------------~~~----~pyf~~lm~~L  207 (594)
                      ..++...+|++ .+++-++..++.....++..++..++.++...                  ...    .+|+..++|.|
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l  326 (462)
T 1ibr_B          247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (462)
T ss_dssp             HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence            88776678898 89999999998888888888998888887541                  111    14567888988


Q ss_pred             HhhhcC-------CcHHHHHHHHHHHHHHHHHcCCccchhhhHHH-HHHHhcchhH---HHHHHhhcCC
Q 007670          208 LGFLSS-------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCL-KIFESKRFDK---MIEAWKQVPD  265 (594)
Q Consensus       208 ~e~L~s-------eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m-~sLEs~RfDK---~i~lWk~i~~  265 (594)
                      ...|..       ++|.+|.+|+++|+.++...|+.+.|..-+.+ ..|.+.....   ++.+...|..
T Consensus       327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~  395 (462)
T 1ibr_B          327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE  395 (462)
T ss_dssp             HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            888853       46999999999999999998864444333333 3444332222   8888888874

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.52  E-value=5.7e-14  Score=161.48  Aligned_cols=242  Identities=13%  Similarity=0.051  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCC-----CCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhc-
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSS-----DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR-   92 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss-----~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLk-   92 (594)
                      .++.+.+.|+.++..++.+.++.++..|.+...+     ++|..|.+++++||.+++++  ...++|+.|++ ++-.|. 
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~  515 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPY  515 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCc
Confidence            3456777888888877744488888888776544     78999999999999999999  66799999999 555555 


Q ss_pred             -CCChhHHHHHHHHHHhhchhhhcch--hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670           93 -DKNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER  169 (594)
Q Consensus        93 -D~Ds~VR~Ac~~ALG~LAe~l~~~~--~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k  169 (594)
                       |+++.||.++++++|++++|+.+.+  ...+++-|+..| +   +.|+..||+||..+++.+...+.||++.|+..|.+
T Consensus       516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~  591 (971)
T 2x1g_F          516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA  591 (971)
T ss_dssp             TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence             7899999999999999999996544  122555555555 3   78999999999999999888888999999999999


Q ss_pred             HhcCC--chhhHHHHHHHHHHHHhcCc-C-cCCchHHHHHHHHhhhc----CC--cHHHHHHHHHHHHHHHHH---cC--
Q 007670          170 LLKSE--VFKAKAAGLVVVGSVIGSGA-V-DGSGLKGLVSCLLGFLS----SQ--DWAARKAAAEALWRLAVV---EK--  234 (594)
Q Consensus       170 lL~s~--~fkaK~alL~aIGSiA~a~~-~-~~pyf~~lm~~L~e~L~----se--Dw~lRKaAaDaLg~IA~a---~g--  234 (594)
                      +++.+  ....+..++++||.++.+.+ + ..+|+..+++.+...|.    ..  +-+.+..++++|+.|+.+   ++  
T Consensus       592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~  671 (971)
T 2x1g_F          592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD  671 (971)
T ss_dssp             HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence            99985  56789999999999997643 2 35888887766666543    22  333556666666666543   33  


Q ss_pred             -----------CccchhhhHHHHHHH----hcchhH-----HHHHHhhcCCCC
Q 007670          235 -----------DAVPEFKGKCLKIFE----SKRFDK-----MIEAWKQVPDLS  267 (594)
Q Consensus       235 -----------d~f~py~~~~m~sLE----s~RfDK-----~i~lWk~i~~v~  267 (594)
                                 +.+.||...+|.++.    ..--|.     ++.+|+.+...+
T Consensus       672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~  724 (971)
T 2x1g_F          672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL  724 (971)
T ss_dssp             ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence                       256777777776444    321122     888888876655

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.52  E-value=1.3e-13  Score=157.67  Aligned_cols=209  Identities=13%  Similarity=0.059  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHhhhhcC----CCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCC
Q 007670           22 YSQAAKELDSIAATVDPTLLPTFLSCILSTN----SSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN   95 (594)
Q Consensus        22 ~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~----ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~D   95 (594)
                      .+.+.+.|+.++..++.+.++.+++.+.+..    .+.+|..|.+++.+||.+++++  ...++|+.|++.+ -.|.+++
T Consensus       424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~  502 (963)
T 2x19_B          424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISN  502 (963)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCS
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCc
Confidence            4566778888887777655888888886665    6778999999999999999998  6678999999955 4677778


Q ss_pred             hhHHHHHHHHHHhhchhhhcchhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC
Q 007670           96 SALQATCISTVSSLSPRVGASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS  173 (594)
Q Consensus        96 s~VR~Ac~~ALG~LAe~l~~~~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s  173 (594)
                      +.||.++++++|++++|+.+.+..  .++.-|+..| +  ++.||..||.||.++++.+...+.||++.|+..|..++..
T Consensus       503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~  579 (963)
T 2x19_B          503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-G--NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK  579 (963)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-T--CGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence            899999999999999999654421  2555555555 3  4899999999999999998888899999999999999986


Q ss_pred             C--chhhHHHHHHHHHHHHhcCc--CcCCchHHHHHHHHhhhc----C-CcH---HHHHHHHHHHHHHHHHcC
Q 007670          174 E--VFKAKAAGLVVVGSVIGSGA--VDGSGLKGLVSCLLGFLS----S-QDW---AARKAAAEALWRLAVVEK  234 (594)
Q Consensus       174 ~--~fkaK~alL~aIGSiA~a~~--~~~pyf~~lm~~L~e~L~----s-eDw---~lRKaAaDaLg~IA~a~g  234 (594)
                      +  ....+..++.+||.++.+.+  .+.+|+..+|+.+.+.|.    . .+-   ..+..+.++|+.|+.+++
T Consensus       580 ~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~  652 (963)
T 2x19_B          580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD  652 (963)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            4  56789999999999997654  346999999988888764    1 133   344478888988888876

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.43  E-value=2.1e-12  Score=125.49  Aligned_cols=186  Identities=12%  Similarity=0.191  Sum_probs=152.1

Q ss_pred             hhcCCChh--HHHHHHHHHHHHHhhcC---CCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccccchHHHH
Q 007670           13 LNKLSDRD--TYSQAAKELDSIAATVD---PTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKII   84 (594)
Q Consensus        13 L~KLsDrD--T~r~A~~eLD~LA~~Lp---pe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~isphLpkIL   84 (594)
                      +..+.|.|  .++.|+..|..++..-+   ...+..++..|...+. +.++.+|.+++.+||.++...  .+.+|++.|+
T Consensus        21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il  100 (242)
T 2qk2_A           21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV  100 (242)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33455554  78899999999988732   3336677777777664 678899999999999999876  7789999999


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--cchhHHH
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--DAGKLGR  162 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~--i~~yL~~  162 (594)
                      |.|+.+|+|+...||++|+.||..++..+   +...+++.|+.+| .+.++.++..++..|..+++..+..  ..+|++.
T Consensus       101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~  176 (242)
T 2qk2_A          101 PSLLEKFKEKKPNVVTALREAIDAIYAST---SLEAQQESIVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLLKL  176 (242)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence            99999999999999999999999998876   2334788888887 6678999999999999999887532  4689999


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcC-cCCchHH
Q 007670          163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKG  202 (594)
Q Consensus       163 L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~-~~pyf~~  202 (594)
                      +++.|.++|+.+...+|.++..++|.++.+ |.+ +.+|++.
T Consensus       177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~  218 (242)
T 2qk2_A          177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD  218 (242)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            999999999999999999999999999955 433 3455543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.30  E-value=6.5e-11  Score=112.23  Aligned_cols=225  Identities=18%  Similarity=0.192  Sum_probs=163.0

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc
Q 007670            9 VNGLLNKLSDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY   79 (594)
Q Consensus         9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph   79 (594)
                      +++.|.. .|.+.+..|+..|-.++..-+        ...++.++.+|.    ++++.+|..++.+|+.++... ....+
T Consensus         7 L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            7 LVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            3444432 456678888888888877543        223666666665    456889999999999998763 11122


Q ss_pred             h--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670           80 I--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ  153 (594)
Q Consensus        80 L--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~  153 (594)
                      +  ...++.+++.|++++..||..|+.+|+.|+..-.+..  +.  ..+++|+..| .+.++.++..|+.||..+....+
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCH
Confidence            1  2478899999999999999999999999996542211  11  1788888877 67789999999999999987532


Q ss_pred             CCcchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670          154 DPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRL  229 (594)
Q Consensus       154 ~~i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~I  229 (594)
                      +. ...+  ...++.|..+|.+++..++..++.+|+.++........++  ..+++.|.+.|.+++..+|+.|+.+|+.|
T Consensus       161 ~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            11 1222  2378899999999999999999999998875332221111  24789999999999999999999999999


Q ss_pred             HHHcCCccchh
Q 007670          230 AVVEKDAVPEF  240 (594)
Q Consensus       230 A~a~gd~f~py  240 (594)
                      +...+..+.+|
T Consensus       240 ~~~~~~~~~~~  250 (252)
T 4hxt_A          240 KSGGWLEHHHH  250 (252)
T ss_dssp             HHTCBCCC---
T ss_pred             HcCCCcccccc
Confidence            99866544444

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.29  E-value=6.3e-11  Score=110.82  Aligned_cols=171  Identities=16%  Similarity=0.217  Sum_probs=124.2

Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChh
Q 007670           18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA   97 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~   97 (594)
                      |.+....|+..|-.+.   +++.++.++.+|.    ++++.+|..++.+||.+..        +..++.+++.|.|+++.
T Consensus        27 ~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~   91 (201)
T 3ltj_A           27 SYYVRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGW   91 (201)
T ss_dssp             CHHHHHHHHHHHHHHC---CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHH
T ss_pred             CHHHHHHHHHHHHhcC---ChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHH
Confidence            3346666666665543   2344777776664    4677889998888887743        24567777888899999


Q ss_pred             HHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchh
Q 007670           98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK  177 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fk  177 (594)
                      ||.+++++||.+...-       .+..|...| .+.++.|+..|+.+|..+.+          +..++.|.++|++++..
T Consensus        92 vr~~a~~aL~~~~~~~-------~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~  153 (201)
T 3ltj_A           92 VRQSAAVALGQIGDER-------AVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGW  153 (201)
T ss_dssp             HHHHHHHHHHHHCCGG-------GHHHHHHHT-TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHhCcHH-------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHH
Confidence            9999999998876543       556666666 67788888888888887743          23445677788888888


Q ss_pred             hHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          178 AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       178 aK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      ++.+++.++|.+   +      -+..++.|.++|.++++.+|.+|+.+|+.|.
T Consensus       154 vr~~A~~aL~~~---~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          154 VRQSAADALGEI---G------GERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHHHH---C------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh---C------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            888888888865   1      2467788888888888889999998888764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.28  E-value=1.2e-11  Score=144.31  Aligned_cols=222  Identities=10%  Similarity=0.002  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhh-----
Q 007670           22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNF-----   91 (594)
Q Consensus        22 ~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s--s~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrL-----   91 (594)
                      ++.+.+.|+.++...+.+.++.+++.|.....  +.+|..|.+++.+||.+++++   .-.++++.|++.+....     
T Consensus       430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~  509 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG  509 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcc
Confidence            45777888888854444348888888877654  467899999999999998876   23467899999888743     


Q ss_pred             cCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcc--------hhH
Q 007670           92 RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA--------GKL  160 (594)
Q Consensus        92 kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~--------~yL  160 (594)
                      +|+.+.||..+++++|++++|+...+  .++++++..|+   .+.++.||..||+||.++++.+.....        ||+
T Consensus       510 ~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~  587 (1049)
T 3m1i_C          510 KDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI  587 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence            25777888889999999999996544  34555555443   567899999999999999998765443        999


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcC------------CcHHHHHH---H
Q 007670          161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSS------------QDWAARKA---A  222 (594)
Q Consensus       161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~lm~~L~e~L~s------------eDw~lRKa---A  222 (594)
                      +.|+..+..++..-.......++.+||.++.+.+.   ..+|+..+|+.+.+.|..            .|-...+.   .
T Consensus       588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  667 (1049)
T 3m1i_C          588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI  667 (1049)
T ss_dssp             HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence            99999999999876666677899999999977653   348888888776655421            12222232   3


Q ss_pred             HHHHHHHHHHcCCccchhhhHHH
Q 007670          223 AEALWRLAVVEKDAVPEFKGKCL  245 (594)
Q Consensus       223 aDaLg~IA~a~gd~f~py~~~~m  245 (594)
                      +.++..++...|..|.|+...++
T Consensus       668 l~~~~~~~~~l~~~f~p~~~~i~  690 (1049)
T 3m1i_C          668 IKTNVAVCTSMGADFYPQLGHIY  690 (1049)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Confidence            56778888889999999877665

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.28  E-value=1.3e-11  Score=145.36  Aligned_cols=231  Identities=9%  Similarity=-0.013  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhc---
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFR---   92 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s--s~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLk---   92 (594)
                      ..+..=+.|..++.-+.++.++.+++.+.+...  +.+|..|.+++.+||.++++.   ...++|+.+++.++..+.   
T Consensus       429 ~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~  508 (1023)
T 4hat_C          429 LYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR  508 (1023)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc
Confidence            344444667666665666568888888876543  478999999999999999887   478999999999998776   


Q ss_pred             --CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC--------cchh
Q 007670           93 --DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP--------DAGK  159 (594)
Q Consensus        93 --D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~--------i~~y  159 (594)
                        |+...||+.+++++|++++|+...+  .+|+|++..|+   .+.++.+|..||.||.++++.+...        ..||
T Consensus       509 ~~d~k~~v~~t~~~~lGry~~wl~~~~--~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~  586 (1023)
T 4hat_C          509 GKDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF  586 (1023)
T ss_dssp             SHHHHHHHHHHHHHHHHTCHHHHHHCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence              5778899999999999999996544  36777777776   4567899999999999999987532        2579


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc---CCchHHHHHHHHhhhcC---------CcH-----HHHH-H
Q 007670          160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD---GSGLKGLVSCLLGFLSS---------QDW-----AARK-A  221 (594)
Q Consensus       160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~---~pyf~~lm~~L~e~L~s---------eDw-----~lRK-a  221 (594)
                      ++.|+..+..++..-..+....++.+||.++.+.+..   ..|+..+|+.+.+.+..         +-|     .-+- .
T Consensus       587 ~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~  666 (1023)
T 4hat_C          587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIAN  666 (1023)
T ss_dssp             HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHH
Confidence            9999999999987667777888999999999776432   25777777666555431         112     2222 3


Q ss_pred             HHHHHHHHHHHcCCccchhhhHHHH-HHHhcch
Q 007670          222 AAEALWRLAVVEKDAVPEFKGKCLK-IFESKRF  253 (594)
Q Consensus       222 AaDaLg~IA~a~gd~f~py~~~~m~-sLEs~Rf  253 (594)
                      -+++++++|...|..|.||...++. .++=+|.
T Consensus       667 il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~  699 (1023)
T 4hat_C          667 IIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA  699 (1023)
T ss_dssp             HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            4778889999999999999987773 4443333

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.23  E-value=1e-10  Score=125.06  Aligned_cols=216  Identities=14%  Similarity=0.139  Sum_probs=161.6

Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHHHHHHhh
Q 007670           17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRN   90 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL~~Ivrr   90 (594)
                      .|.+..+.|+..|-.|+..-|...   +..+++.|.....+.++.+|..++.+|+.++.+.  .+...+ ..+++.+++.
T Consensus       215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l  294 (528)
T 4b8j_A          215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (528)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence            455688889999999988754322   2334444545556778899999999999998765  211111 2478899999


Q ss_pred             hcCCChhHHHHHHHHHHhhchhhhcchhH----HhHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCcchhH-HHHH
Q 007670           91 FRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKL-GRME  164 (594)
Q Consensus        91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~----~~lkPL~eaL~~eq-~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~  164 (594)
                      |++++..||..|+.+||.|+.........    .++++|+..| .+. ++.++..||.+|..+..+..+.....+ ..++
T Consensus       295 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i  373 (528)
T 4b8j_A          295 LLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL-TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII  373 (528)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred             HcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH-cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence            99999999999999999999854322111    1678888887 455 899999999999999874222111112 2477


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcCc-CcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      +.|+.+|.+.++.++..++.+|+.++..+. +...|+  ..+++.|...|.+.|+.+|..|+++|+.|....
T Consensus       374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999987642 333444  357899999999999999999999999998864

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.22  E-value=2.4e-10  Score=107.61  Aligned_cols=170  Identities=16%  Similarity=0.203  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA  100 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~  100 (594)
                      ....|+..|-.+.   +++.++.|+.++.    ++++.+|.+++.+||.+..        +..++.+++.|+|+++.||.
T Consensus        35 vR~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~   99 (211)
T 3ltm_A           35 VRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGWVRQ   99 (211)
T ss_dssp             HHHHHHHHHHHHC---CGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHhC---CccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHHHHH
Confidence            5555555554432   2344666666554    3567778888777777642        34556666777788888888


Q ss_pred             HHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHH
Q 007670          101 TCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA  180 (594)
Q Consensus       101 Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~  180 (594)
                      +++.+||.+...-       .+..|...| .+.++.|+..|+.+|..+-+          +..++.|.++|++++..++.
T Consensus       100 ~a~~aL~~~~~~~-------~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~  161 (211)
T 3ltm_A          100 SAAVALGQIGDER-------AVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQ  161 (211)
T ss_dssp             HHHHHHHHHCCGG-------GHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHhCcHH-------HHHHHHHHH-hCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHH
Confidence            8888887776532       455556555 66777777777777777632          12344566677777777777


Q ss_pred             HHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          181 AGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       181 alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +++.+++.+.         -+.+++.|..+|.++++.+|.+|+++|+.+...
T Consensus       162 ~a~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          162 SAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            7777777542         145667777777777777888888887776543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.22  E-value=2.2e-10  Score=118.07  Aligned_cols=215  Identities=11%  Similarity=0.100  Sum_probs=156.4

Q ss_pred             ChhHHHHHHHHHHHHHhhcCCC-C---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc--hHHHHHHHHhh
Q 007670           18 DRDTYSQAAKELDSIAATVDPT-L---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRN   90 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lppe-~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph--LpkIL~~Ivrr   90 (594)
                      +.+..+.|+..|-.|+..-.|. .   +..+++.|.....+.++.+|..++.+|+.++... -....  -..+++.+++.
T Consensus       163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  242 (450)
T 2jdq_A          163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL  242 (450)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHH
Confidence            4557889999999999765221 1   2333444444444677899999999999998754 11111  13477888889


Q ss_pred             hcCCChhHHHHHHHHHHhhchhhhcchh--H--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHH
Q 007670           91 FRDKNSALQATCISTVSSLSPRVGASAF--V--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEV  165 (594)
Q Consensus        91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~--~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~  165 (594)
                      |++++..||.+|+.+|+.|+........  .  .++++|+..| .+.++.++..|+.||..+..+.++.....+ ..+++
T Consensus       243 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~  321 (450)
T 2jdq_A          243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP  321 (450)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             HCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            9999999999999999999986532111  1  2677777777 567899999999999999874322222223 24788


Q ss_pred             HHHHHhcCCchhhHHHHHHHHHHHHhcCc-CcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          166 RLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       166 RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      .|+.+|++++..+|..++.+|+.++..+. +...++  ..+++.|.+.|.+.++.+|..|+.+|+.++...
T Consensus       322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  392 (450)
T 2jdq_A          322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG  392 (450)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999886432 222222  247899999999999999999999999999854

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.20  E-value=2.1e-10  Score=118.24  Aligned_cols=212  Identities=15%  Similarity=0.152  Sum_probs=161.2

Q ss_pred             CChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHH
Q 007670           17 SDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIIN   85 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~   85 (594)
                      .|.+.+..|+..|-.|+..-+        ...++.|+.++.+   ++++.+|+.++.+|+.++...   .-...+..++|
T Consensus       119 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  195 (450)
T 2jdq_A          119 EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN  195 (450)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHH
T ss_pred             CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            345578889999988887532        3448888888763   356789999999999999654   22344578899


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-
Q 007670           86 SITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-  160 (594)
Q Consensus        86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-  160 (594)
                      .+++.|+++|..||..++++|+.|+....+..  ..  .++++|+..| .+.+..++..|+.||..++...++.....+ 
T Consensus       196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  274 (450)
T 2jdq_A          196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILN  274 (450)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence            99999999999999999999999998653211  11  2788888877 678899999999999999875332111112 


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      ..+++.|.++|++++..++..++.+|+.++...... ...+ ..+++.|...|.+++..+|+.|+-+|+.++..
T Consensus       275 ~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            148889999999999899999999999887422111 1222 25788899999899999999999999999875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.19  E-value=3e-10  Score=121.86  Aligned_cols=216  Identities=13%  Similarity=0.116  Sum_probs=159.3

Q ss_pred             CChhHHHHHHHHHHHHHhhc-CCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH-HHHHHHHh
Q 007670           17 SDRDTYSQAAKELDSIAATV-DPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITR   89 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~L-ppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp-kIL~~Ivr   89 (594)
                      .|.+..+.|+..|-.|+..- +...   +..+++.|.....+.++.+|..++.+|+.++...  .+...+. .+++.++.
T Consensus       227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~  306 (530)
T 1wa5_B          227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE  306 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence            45667888999999999765 2211   2223333444445667899999999999998764  2222222 67888999


Q ss_pred             hhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHH
Q 007670           90 NFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRME  164 (594)
Q Consensus        90 rLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~  164 (594)
                      .|++++..||.+|+.+|+.|+.......  ..  .++++|+..| .+.+..++..|+.||..+.....+....++ ..++
T Consensus       307 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l  385 (530)
T 1wa5_B          307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLI  385 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             HHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            9999999999999999999996542211  11  2777787777 566889999999999999875332222222 2477


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      +.|+.+|.++++.++..++.+|+.++..+..   ...++-.  +++.|..+|.+++..+|..|+++|..|+...
T Consensus       386 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence            8899999989999999999999999876432   2233333  7899999999999999999999999999864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.17  E-value=1.7e-10  Score=107.95  Aligned_cols=186  Identities=15%  Similarity=0.175  Sum_probs=139.9

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc-
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-  116 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-  116 (594)
                      .++|+..|    .++++.+|.+++.+|+.++.+.  .....+ ...++.+++.|+++++.||..|+.+|+.|+..-.+. 
T Consensus        14 ~~~l~~LL----~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           14 LPQMVQQL----NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             HHHHHHHT----TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHh----cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            45555554    3578899999999999998655  221111 257899999999999999999999999999654222 


Q ss_pred             -hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          117 -AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       117 -~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                       .+.  ..+++|+..| .+.++.++..|+.||..+....++.....+ ..+++.|+++|++++..++..++.+++.++..
T Consensus        90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence             111  1778888888 677899999999999999874322111122 23788999999999999999999999998865


Q ss_pred             CcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          193 GAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       193 ~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .....  -.-...++.|.+.|.+++..+|..|+.+|+.|+.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            43322  1112478999999999999999999999998863

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.3e-10  Score=113.88  Aligned_cols=182  Identities=9%  Similarity=0.096  Sum_probs=148.2

Q ss_pred             hHHHHHHHHHHH-HHhh---cC--CCChHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh---ccc-cchHHHHHHHH
Q 007670           20 DTYSQAAKELDS-IAAT---VD--PTLLPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH---NLS-PYITKIINSIT   88 (594)
Q Consensus        20 DT~r~A~~eLD~-LA~~---Lp--pe~lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h---~is-phLpkIL~~Iv   88 (594)
                      .-++-|+..|-. +++.   +.  ...+..++..|...+ ...++.+|..|+.+||.+|++.   .+. +|...++|.|+
T Consensus        31 ~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll  110 (249)
T 2qk1_A           31 KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLL  110 (249)
T ss_dssp             HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            366778888888 7754   33  233677788887777 5677889999999999999765   567 99999999999


Q ss_pred             hhhcCCChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---cchhH-
Q 007670           89 RNFRDKNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKL-  160 (594)
Q Consensus        89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~---i~~yL-  160 (594)
                      .+++|....||+|+..|+-.+++.+...   + ...++..|+.+| ...++.++.+++.+|.++++..+..   ..+|+ 
T Consensus       111 ~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~  189 (249)
T 2qk1_A          111 DRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK  189 (249)
T ss_dssp             HGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence            9999999999999999999999987211   1 334777788777 5668999999999999999998753   35799 


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcC-cCCchHH
Q 007670          161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKG  202 (594)
Q Consensus       161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~-~~pyf~~  202 (594)
                      +.++|.|.++|+.....+|.++..+++.+..+ |.. +.||++.
T Consensus       190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~  233 (249)
T 2qk1_A          190 DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH  233 (249)
T ss_dssp             TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            99999999999999999999999999999855 433 4466654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.17  E-value=7.9e-11  Score=112.99  Aligned_cols=209  Identities=15%  Similarity=0.188  Sum_probs=153.6

Q ss_pred             CChhHHHHHHHHHHHHHhh-------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchH--HHHH
Q 007670           17 SDRDTYSQAAKELDSIAAT-------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KIIN   85 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~-------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLp--kIL~   85 (594)
                      +|.+.+..|+..|..++..       + ....++.|+..|..    +++.+|.+++.+|+.++.+. .....+-  ..++
T Consensus        24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~   99 (252)
T 4db8_A           24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALP   99 (252)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence            4566888888888554332       1 23337777777753    45889999999999998754 2222222  3799


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHhhchhhhcc-h-hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-
Q 007670           86 SITRNFRDKNSALQATCISTVSSLSPRVGAS-A-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-  160 (594)
Q Consensus        86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-~-~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-  160 (594)
                      .+++.|+++++.||..|+.+|+.|+..-... . ..  ..+++|+..| .+.++.++..|+.||..+....++. ...+ 
T Consensus       100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~  177 (252)
T 4db8_A          100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-IQAVI  177 (252)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHH-HHHHH
Confidence            9999999999999999999999998765322 1 11  1778888877 6778999999999999998753211 1222 


Q ss_pred             -HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-CchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       161 -~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                       ..+++.|+++|++++..++..++.+++.++....... ...+ .+++.|.+.|.+++..+|..|+.+|+.|+.
T Consensus       178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence             3367899999999999999999999998874332221 1122 378999999999999999999999998764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.17  E-value=5.7e-10  Score=104.30  Aligned_cols=155  Identities=19%  Similarity=0.257  Sum_probs=124.6

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      .+.....+.+.+.++++.+|.+++.+||.+..        +..++.+++.|+|++..||.+++.+||.+...-       
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-------   76 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER-------   76 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-------
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-------
Confidence            34445555555667899999999999998754        345788889999999999999999999987543       


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL  200 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf  200 (594)
                      .+.+|...| .+.++.++..|+.+|..+.+          +..++.|.++|++++..++.+++.++|.+..         
T Consensus        77 ~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------  136 (201)
T 3ltj_A           77 AVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------  136 (201)
T ss_dssp             GHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence            567777777 77899999999999988643          1245567778899999999999988887631         


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          201 KGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       201 ~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      +..++.|..+|.+++|.+|.+|+.+|+.+.
T Consensus       137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  166 (201)
T 3ltj_A          137 ERAVEPLIKALKDEDGWVRQSAADALGEIG  166 (201)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            356788899999999999999999999983

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.14  E-value=5e-10  Score=105.44  Aligned_cols=155  Identities=19%  Similarity=0.293  Sum_probs=126.9

Q ss_pred             CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc
Q 007670           37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS  116 (594)
Q Consensus        37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~  116 (594)
                      +++.++.++..|.    ++++.+|..++..||.+..        +..++.+++.|+|+|..||.+++.+||.+...-   
T Consensus        17 ~~~~~~~L~~~L~----~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~---   81 (211)
T 3ltm_A           17 DPEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER---   81 (211)
T ss_dssp             CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG---
T ss_pred             CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH---
Confidence            4555888777765    5788999999999998754        466788889999999999999999999987543   


Q ss_pred             hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc
Q 007670          117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD  196 (594)
Q Consensus       117 ~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~  196 (594)
                          .+.+|...| .+.++.++..|+.+|..+.+          +..++.|.++|++++..++..++.++|.+..     
T Consensus        82 ----~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  141 (211)
T 3ltm_A           82 ----AVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  141 (211)
T ss_dssp             ----GHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             ----HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence                667777777 78899999999999988743          1245667788999999999999999887621     


Q ss_pred             CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          197 GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       197 ~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                          +..++.|.++|.++++.+|.+|+.+|+.+.
T Consensus       142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence                346788889999999999999999999984

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.13  E-value=3e-10  Score=121.88  Aligned_cols=212  Identities=9%  Similarity=0.100  Sum_probs=159.4

Q ss_pred             CChhHHHHHHHHHHHHHhhc-CC--------CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHH
Q 007670           17 SDRDTYSQAAKELDSIAATV-DP--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKII   84 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~L-pp--------e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL   84 (594)
                      +|.+.+..|+..|..++..- ++        ..+|.|+.+|.+.   +++.+|.+++.+|+.++.+. -....+  ..++
T Consensus        99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i  175 (530)
T 1wa5_B           99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAV  175 (530)
T ss_dssp             SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence            35567888999998887653 22        2377777777532   26789999999999998754 111222  3568


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-CCCcchh
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA-QDPDAGK  159 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l-~~~i~~y  159 (594)
                      +.+++.|++++..||..|+++|+.|+.......  ..  .++++|+..| .+.+..++..|+.||..++... +.....+
T Consensus       176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~  254 (530)
T 1wa5_B          176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSV  254 (530)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence            888888999999999999999999997642211  11  2788888888 5678899999999999999875 2223445


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-CchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      ...+++.|+++|.+++..++..++.+|+.++....... ..+. .+++.|.++|.+.+|.+|..|+.+|+.|+..
T Consensus       255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~  329 (530)
T 1wa5_B          255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  329 (530)
T ss_dssp             HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence            66788999999999988888889999998885432211 1222 4688999999999999999999999999863

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.11  E-value=1.6e-09  Score=115.77  Aligned_cols=212  Identities=11%  Similarity=0.125  Sum_probs=161.9

Q ss_pred             CChhHHHHHHHHHHHHHhhcC-C--------CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHH
Q 007670           17 SDRDTYSQAAKELDSIAATVD-P--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKII   84 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~Lp-p--------e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL   84 (594)
                      +|.+.+..|+..|..++..-+ +        ..+|.|+.+|...   ..+.+|.+++.+|+.++.+.  .....+ ...+
T Consensus        86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i  162 (528)
T 4b8j_A           86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (528)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence            455678889999988876543 1        2378888877531   23789999999999999864  211111 1488


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL  160 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL  160 (594)
                      +.+++.|++++..||..|+++|+.|+......  ...  ..++||+..|....+..++..|+.||..++...+.......
T Consensus       163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~  242 (528)
T 4b8j_A          163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT  242 (528)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence            99999999999999999999999998654221  111  17889998885567899999999999999998655555567


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      ..+++.|.++|.+++..++..++.+++.++....... ..+ ..+++.|...|.+.++.+|..|+.+|+.|+.
T Consensus       243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence            7799999999999998888888888888774332211 111 1468899999999999999999999999987

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.08  E-value=3.1e-09  Score=104.32  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=134.5

Q ss_pred             CCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHH-hhhc
Q 007670           16 LSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSIT-RNFR   92 (594)
Q Consensus        16 LsDrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~Iv-rrLk   92 (594)
                      |.|.|  ....|+..|-.+.   +++.++.++.++.    ++++.+|..++.+||.+...   ...++.+++.+. ..++
T Consensus        32 L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~~L~~~~~~  101 (280)
T 1oyz_A           32 LDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKIC---KKCEDNVFNILNNMALN  101 (280)
T ss_dssp             TTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCC---TTTHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHccC---CchHHHHHHHHHc----CCCHHHHHHHHHHHHHhccc---cccchHHHHHHHHHHhc
Confidence            44444  5667777776664   3334777776664    46788999999999877432   223566777777 4678


Q ss_pred             CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670           93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK  172 (594)
Q Consensus        93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~  172 (594)
                      |+++.||.+++++||.+...... ....++++|...| .+.++.++..|+.+|..+.+          +..++.|.++|+
T Consensus       102 d~~~~vr~~a~~aL~~l~~~~~~-~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~  169 (280)
T 1oyz_A          102 DKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITA-FDKSTNVRRATAFAISVIND----------KATIPLLINLLK  169 (280)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHc
Confidence            99999999999999998754311 0113667777777 77889999999998876543          124566778888


Q ss_pred             CCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          173 SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       173 s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      +++..++..++.++|.+.       ..-+.+++.|...|.++++.+|..|+.+|+.+.
T Consensus       170 d~~~~vr~~a~~aL~~~~-------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          170 DPNGDVRNWAAFAININK-------YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             CSSHHHHHHHHHHHHHHT-------CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhhc-------cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence            898889988888888652       123567888899999999999999999999875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.04  E-value=2e-09  Score=102.02  Aligned_cols=186  Identities=17%  Similarity=0.183  Sum_probs=140.4

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA  117 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~  117 (594)
                      ++.|+.+|.    ++++..|.+++.+|+.++...  .....+ ..+++.+++.|++++..||..|+.+|+.|+..-.+..
T Consensus         4 i~~L~~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            4 VEKLVKLLT----STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            566666665    455889999999999998766  221112 2578999999999999999999999999998642211


Q ss_pred             --hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          118 --FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       118 --~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                        +.  ..+++|+..| .+.++.++..|+.+|..+....++.....+ ...++.|+++|++++..++..++.+++.++..
T Consensus        80 ~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence              11  1788888877 678899999999999999863221111111 23788999999999999999999999988754


Q ss_pred             CcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          193 GAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       193 ~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .....  -.-..+++.|.++|.++++.+|..|+.+|+.|+.
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  199 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  199 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            32211  1113478999999999999999999999999986

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.04  E-value=4.7e-09  Score=102.99  Aligned_cols=166  Identities=10%  Similarity=0.011  Sum_probs=129.2

Q ss_pred             CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch
Q 007670           38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA  117 (594)
Q Consensus        38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~  117 (594)
                      ...++.++.+|.    ++++.+|.+++.+||.+..        +..++.+++.|+|+++.||.+++++||.+...-  ..
T Consensus        22 ~~~i~~L~~~L~----~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~   87 (280)
T 1oyz_A           22 KLNDDELFRLLD----DHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KC   87 (280)
T ss_dssp             TSCHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TT
T ss_pred             HhhHHHHHHHHH----cCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--cc
Confidence            445888887775    4688999999999998762        568889999999999999999999999987422  11


Q ss_pred             hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC
Q 007670          118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG  197 (594)
Q Consensus       118 ~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~  197 (594)
                      ...+++.|...+.++.++.++..|+.||..+....+    .+.+.+++.|.++|++++..++..++.++|.+..      
T Consensus        88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------  157 (280)
T 1oyz_A           88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------  157 (280)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred             chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------
Confidence            122344444345578899999999999999876432    3456788899999999999999888888875321      


Q ss_pred             CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          198 SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       198 pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                         +..++.|.+.|.++++.+|..|+.+|+.+.
T Consensus       158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  187 (280)
T 1oyz_A          158 ---KATIPLLINLLKDPNGDVRNWAAFAININK  187 (280)
T ss_dssp             ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence               235788888999999999999999999883

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.04  E-value=4.8e-09  Score=115.50  Aligned_cols=237  Identities=14%  Similarity=0.109  Sum_probs=135.7

Q ss_pred             cCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcC
Q 007670           15 KLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRD   93 (594)
Q Consensus        15 KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD   93 (594)
                      -|.|.++.--++. |..|+.--.++-.+.+++.|.....+++|.+||.|+.+++.++... -+.++ +.+++.+.+.|.|
T Consensus        94 dL~~~n~~ir~~A-L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~lL~d  171 (591)
T 2vgl_B           94 DCEDPNPLIRALA-VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRDLIAD  171 (591)
T ss_dssp             GSSSSSHHHHHHH-HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHHTTSC
T ss_pred             HcCCCCHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHHHhCC
Confidence            3455553322222 4445544455445555555655556667777777777777766643 11111 3466777777777


Q ss_pred             CChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670           94 KNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER  169 (594)
Q Consensus        94 ~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k  169 (594)
                      +|+.||.+|+.+|+.++..-.+.   . ....+..|+..| .+.++-.|....-+|..+.    ....+....+++.+..
T Consensus       172 ~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~----~~~~~~~~~~l~~l~~  246 (591)
T 2vgl_B          172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYN----PKDDREAQSICERVTP  246 (591)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSC----CCSHHHHHHHHHHHTT
T ss_pred             CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhC----CCChHHHHHHHHHHHH
Confidence            77777777777777766654211   0 112455555555 3455666654443332222    2222345667777888


Q ss_pred             HhcCCchhhHHHHHHHHHHHHhcCcCcCCch----HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670          170 LLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL----KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL  245 (594)
Q Consensus       170 lL~s~~fkaK~alL~aIGSiA~a~~~~~pyf----~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m  245 (594)
                      +|++.+..+.-.++.+|+.+...-......+    ..+.+.|. +|.+.|..+|-+|+.+|+.|+...++.|.++...++
T Consensus       247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~  325 (591)
T 2vgl_B          247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF  325 (591)
T ss_dssp             CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS
T ss_pred             HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe
Confidence            8888876655555555544321100111233    34445555 455689999999999999999988888887755432


Q ss_pred             HHHHhcchhH-------HHHHHhhcC
Q 007670          246 KIFESKRFDK-------MIEAWKQVP  264 (594)
Q Consensus       246 ~sLEs~RfDK-------~i~lWk~i~  264 (594)
                           |.+|.       ++++|-.+.
T Consensus       326 -----~~~~d~~~Ir~~al~~L~~l~  346 (591)
T 2vgl_B          326 -----VKYNDPIYVKLEKLDIMIRLA  346 (591)
T ss_dssp             -----CCTTSCHHHHHHHHHHHHHTC
T ss_pred             -----eccCChHHHHHHHHHHHHHHC
Confidence                 44442       788887776

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.03  E-value=8.8e-10  Score=129.23  Aligned_cols=171  Identities=10%  Similarity=0.073  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHhhcCCCC-hH----HHHHhhhhcC---CCCCCcchHHHHHHHHHHHhhh-c-------cccchHHHHH
Q 007670           22 YSQAAKELDSIAATVDPTL-LP----TFLSCILSTN---SSDKPGVRKECIHVIATLSNSH-N-------LSPYITKIIN   85 (594)
Q Consensus        22 ~r~A~~eLD~LA~~Lppe~-lp----~fLs~L~e~~---ss~kp~~RKaaI~lLGvlae~h-~-------isphLpkIL~   85 (594)
                      .|--+..|......+.|+. +.    .+...+.++.   .+.+|..+.+++.+|+.++|++ .       ..+++|.|++
T Consensus       414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~  493 (980)
T 3ibv_A          414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ  493 (980)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence            4444456666666666666 66    5666666654   2567999999999999999998 2       2378999999


Q ss_pred             HHHhhhc-----CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc-----CCChhHHHHHHHHHHHHHhhcCCC
Q 007670           86 SITRNFR-----DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT-----EQDTNAQVGAALCLAATIDAAQDP  155 (594)
Q Consensus        86 ~IvrrLk-----D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~-----eq~k~vQ~~Aa~ALaavvE~l~~~  155 (594)
                      .+.+.++     ++.+.||.++++++|++++|+...+  .++.|++.++++     ++++.||.+||+++.++|+.+...
T Consensus       494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~  571 (980)
T 3ibv_A          494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ  571 (980)
T ss_dssp             HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence            9999877     9999999999999999999997655  488888888875     567889999999999999999988


Q ss_pred             cchhHHHHHHHHHHHhcCC---------------------chhhHHHHHHHHHHHHhcCc
Q 007670          156 DAGKLGRMEVRLERLLKSE---------------------VFKAKAAGLVVVGSVIGSGA  194 (594)
Q Consensus       156 i~~yL~~L~~RL~klL~s~---------------------~fkaK~alL~aIGSiA~a~~  194 (594)
                      +.+|++.|+..+..+|.-.                     .|...--+..+||.++++.+
T Consensus       572 L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          572 VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence            8899999999988888631                     13344558888888886643

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.98  E-value=7.6e-09  Score=119.68  Aligned_cols=225  Identities=8%  Similarity=0.025  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHHhhc-----CCC------ChHHH-HHhhhhcCCCC---CCcchHHHHHHHHHHHhhhccccchHHHHH
Q 007670           21 TYSQAAKELDSIAATV-----DPT------LLPTF-LSCILSTNSSD---KPGVRKECIHVIATLSNSHNLSPYITKIIN   85 (594)
Q Consensus        21 T~r~A~~eLD~LA~~L-----ppe------~lp~f-Ls~L~e~~ss~---kp~~RKaaI~lLGvlae~h~isphLpkIL~   85 (594)
                      ....|+-.|-.||..+     +..      .+.+| ...+.+.+.++   .|.+|..++.++|..++.. -..+++.+++
T Consensus       421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~~~l~  499 (960)
T 1wa5_C          421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLIELMP  499 (960)
T ss_dssp             HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHHHHHH
Confidence            5567888888898653     222      55454 45555544445   7899999999999998753 3358999999


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHhhchhhh----------cchhHHhHHHHHHHHc---cCCC---hh--HHHHHHHHHHH
Q 007670           86 SITRNFRDKNSALQATCISTVSSLSPRVG----------ASAFVTMLKLLSDALF---TEQD---TN--AQVGAALCLAA  147 (594)
Q Consensus        86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~----------~~~~~~~lkPL~eaL~---~eq~---k~--vQ~~Aa~ALaa  147 (594)
                      .+++.|.|++..||.+|+.|+..|++...          ...+.-++.+|+..|+   ++..   ..  ....+..||..
T Consensus       500 ~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~  579 (960)
T 1wa5_C          500 ILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFR  579 (960)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHH
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHH
Confidence            99999999999999999999999998642          1112226666666554   2220   11  44688999999


Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHhcC----C-chhhHHHHHHHHHHHHhcC-cC-cCCchHHHHHHHHhhhcCCcHHHHH
Q 007670          148 TIDAAQDPDAGKLGRMEVRLERLLKS----E-VFKAKAAGLVVVGSVIGSG-AV-DGSGLKGLVSCLLGFLSSQDWAARK  220 (594)
Q Consensus       148 vvE~l~~~i~~yL~~L~~RL~klL~s----~-~fkaK~alL~aIGSiA~a~-~~-~~pyf~~lm~~L~e~L~seDw~lRK  220 (594)
                      +++.+++.+.||+..||++|...+..    + +......++++||+++.+. .+ ..+|.+.+||.+...|..+....+-
T Consensus       580 vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~  659 (960)
T 1wa5_C          580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIP  659 (960)
T ss_dssp             HHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence            99999999999999999998887742    3 3344556899999999873 23 3478888999998888766555666


Q ss_pred             HHHHHHHHHHHHcCCccchhhhHHHHH
Q 007670          221 AAAEALWRLAVVEKDAVPEFKGKCLKI  247 (594)
Q Consensus       221 aAaDaLg~IA~a~gd~f~py~~~~m~s  247 (594)
                      .+.+.++.+.... +.|.||...++..
T Consensus       660 ~~~~i~~~l~~~~-~~~~~~~~~~~~~  685 (960)
T 1wa5_C          660 YVFQIIAFVVEQS-ATIPESIKPLAQP  685 (960)
T ss_dssp             HHHHHHHHHHHHC-SSCCTTTGGGHHH
T ss_pred             HHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence            7888888887766 5666665555443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.95  E-value=8.2e-09  Score=98.87  Aligned_cols=186  Identities=15%  Similarity=0.160  Sum_probs=138.5

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHH-Hhhh-ccccch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATL-SNSH-NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA  117 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl-ae~h-~isphL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~  117 (594)
                      ++.|+..|.    ++++..|..++.+|..+ +... .....+ ..+++.+++.|++++..||..|+.+|+.|+..-.+..
T Consensus        14 ~~~~~~~L~----s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           14 LPQMTQQLN----SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             HHHHHHHHH----SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            788888876    46778999999999654 4322 211111 2578999999999999999999999999997543221


Q ss_pred             --hHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          118 --FVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       118 --~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                        ...  .+++|+..| .+.++.++..|+.||..+...........+. ..++.|+++|++++..++..++.+++.++..
T Consensus        90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence              111  678888777 6678999999999999997753221111222 2788999999999999999999999988754


Q ss_pred             CcCcCCc--hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          193 GAVDGSG--LKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       193 ~~~~~py--f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .......  -..+++.|.+.|.+++..+|..|+.+|+.|+.
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  209 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  209 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence            3222111  13468999999999999999999999999984

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.91  E-value=6e-08  Score=99.34  Aligned_cols=184  Identities=17%  Similarity=0.201  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhhcC-----------CChhHHHHHHHHHHHHHhhcC-------CCChHHHHH-hhhhcCCCCCCcchHHHH
Q 007670            4 ALKTSVNGLLNKL-----------SDRDTYSQAAKELDSIAATVD-------PTLLPTFLS-CILSTNSSDKPGVRKECI   64 (594)
Q Consensus         4 ~Lk~rvl~~L~KL-----------sDrDT~r~A~~eLD~LA~~Lp-------pe~lp~fLs-~L~e~~ss~kp~~RKaaI   64 (594)
                      ++.+.++++|.--           ++.+....|+..|..++.+++       ...+|+|+. +|.    ++++.+|..|+
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~----s~~~~vr~~Aa  103 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE----AGAAGLRWRAA  103 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT----CSSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc----CCCHHHHHHHH
Confidence            4556666776642           122466778888888887654       222788888 664    57889999999


Q ss_pred             HHHHHHHhhh-ccccch--HHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcc--hhHH--hHHHHHHHHccCCChh
Q 007670           65 HVIATLSNSH-NLSPYI--TKIINSITRNFR-DKNSALQATCISTVSSLSPRVGAS--AFVT--MLKLLSDALFTEQDTN  136 (594)
Q Consensus        65 ~lLGvlae~h-~isphL--pkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~--~~~~--~lkPL~eaL~~eq~k~  136 (594)
                      .+||.++... .....+  ...+|.+++.|+ |++..||..|++||+.|+..-...  .+..  .+++|+..| ...+..
T Consensus       104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~  182 (296)
T 1xqr_A          104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQK  182 (296)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHH
Confidence            9999998654 111111  146677777777 678999999999999998765322  2222  788888888 567999


Q ss_pred             HHHHHHHHHHHHHhhcCCCcchhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhcC
Q 007670          137 AQVGAALCLAATIDAAQDPDAGKLGR--MEVRLERLLKSEVFKAKAAGLVVVGSVIGSG  193 (594)
Q Consensus       137 vQ~~Aa~ALaavvE~l~~~i~~yL~~--L~~RL~klL~s~~fkaK~alL~aIGSiA~a~  193 (594)
                      +|..||.||..++.+ .+....++-.  .+++|+.+|++++..++..++.+|+.++...
T Consensus       183 v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          183 LKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             HHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            999999999999987 3333445544  8899999999999999999999999999663

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.90  E-value=1.4e-07  Score=103.77  Aligned_cols=219  Identities=13%  Similarity=0.158  Sum_probs=133.3

Q ss_pred             CChh--HHHHHHHHHHHHHhhcCCCChH--HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--c-----ccc-------
Q 007670           17 SDRD--TYSQAAKELDSIAATVDPTLLP--TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N-----LSP-------   78 (594)
Q Consensus        17 sDrD--T~r~A~~eLD~LA~~Lppe~lp--~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~-----isp-------   78 (594)
                      .|++  -++.|+-.|-.+.. ..|+.++  .+++.|.+...++++.+|.+|+.+|+.++...  .     ..+       
T Consensus       131 ~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~  209 (591)
T 2vgl_B          131 KDEDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT  209 (591)
T ss_dssp             SCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHh-hChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH
Confidence            4555  66889999999988 5677766  58889988888899999999999999997642  0     001       


Q ss_pred             --------------------------chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--h----hHHhHHHHH
Q 007670           79 --------------------------YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--A----FVTMLKLLS  126 (594)
Q Consensus        79 --------------------------hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~----~~~~lkPL~  126 (594)
                                                ....+++.+...|++.++.|+-+|+.+++.+...+...  .    ...+..||+
T Consensus       210 ~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~  289 (591)
T 2vgl_B          210 ALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV  289 (591)
T ss_dssp             HHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence                                      12456777778899999999999999999998655211  1    123667777


Q ss_pred             HHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHH
Q 007670          127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSC  206 (594)
Q Consensus       127 eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~  206 (594)
                      ..+ . .+++++-.|..+|..++..-++...+++..    ++ ++.+++..+|..++..++.++..     ...+.+++.
T Consensus       290 ~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~----~~-~~~~d~~~Ir~~al~~L~~l~~~-----~nv~~iv~~  357 (591)
T 2vgl_B          290 TLL-S-GEPEVQYVALRNINLIVQKRPEILKQEIKV----FF-VKYNDPIYVKLEKLDIMIRLASQ-----ANIAQVLAE  357 (591)
T ss_dssp             HHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTT----TS-CCTTSCHHHHHHHHHHHHHTCCS-----STHHHHHHH
T ss_pred             HHh-c-CCccHHHHHHHHHHHHHHhChHHHHHHHHh----he-eccCChHHHHHHHHHHHHHHCCh-----hhHHHHHHH
Confidence            543 3 789999999999999998654433332211    11 11122233444444444433211     113344444


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH
Q 007670          207 LLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF  248 (594)
Q Consensus       207 L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL  248 (594)
                      |.+|+.+.||..|+.++.+|+.+|....+.+.-|..-+++.+
T Consensus       358 L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll  399 (591)
T 2vgl_B          358 LKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI  399 (591)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence            445554445555555555555544433333333333333333

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.80  E-value=9.1e-08  Score=110.14  Aligned_cols=243  Identities=10%  Similarity=0.075  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHhhcCCC---ChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCC
Q 007670           21 TYSQAAKELDSIAATVDPT---LLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKN   95 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe---~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~D   95 (594)
                      ....|+-.|-.+++.++..   .++.++..+.+... .+.|.+|..++.++|..++-. --..||+.+++.|+++| |  
T Consensus       480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--  556 (971)
T 2x1g_F          480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--  556 (971)
T ss_dssp             HHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--
Confidence            5566777777788777542   27888885544332 247889999999999998765 23379999999999999 5  


Q ss_pred             hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cC--CChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHH-
Q 007670           96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE--QDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLE-  168 (594)
Q Consensus        96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~e--q~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~-  168 (594)
                      +.|+.+|+.|+..|++.+... ..-++.+|+..|+   ..  -+...+..+.-|+..++..++ +...+|+..|++.+. 
T Consensus       557 ~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~  635 (971)
T 2x1g_F          557 SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE  635 (971)
T ss_dssp             SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            789999999999999877321 2225556655553   33  356788899999999998876 334667766555544 


Q ss_pred             ---HHhcCCc--hhhH---HHHHHHHHHHHhcCc--------------CcCCchHHHHHHHHhhhcC--CcHHHHHHHHH
Q 007670          169 ---RLLKSEV--FKAK---AAGLVVVGSVIGSGA--------------VDGSGLKGLVSCLLGFLSS--QDWAARKAAAE  224 (594)
Q Consensus       169 ---klL~s~~--fkaK---~alL~aIGSiA~a~~--------------~~~pyf~~lm~~L~e~L~s--eDw~lRKaAaD  224 (594)
                         .+++.+.  -..+   ...++.|+.++++-+              .+.+|++.+|+.+...+..  ++-.+...++.
T Consensus       636 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~  715 (971)
T 2x1g_F          636 ELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACS  715 (971)
T ss_dssp             HHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence               4444432  1122   235556666654311              1237888889988887753  46688999999


Q ss_pred             HHHHHHHHcCCccchhhhHHHHHH----HhcchhHHHHHHhhcCCCC
Q 007670          225 ALWRLAVVEKDAVPEFKGKCLKIF----ESKRFDKMIEAWKQVPDLS  267 (594)
Q Consensus       225 aLg~IA~a~gd~f~py~~~~m~sL----Es~RfDK~i~lWk~i~~v~  267 (594)
                      +++.++...|+.|.||...++..+    ++.+..-.+.+=..+-..+
T Consensus       716 ~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~  762 (971)
T 2x1g_F          716 AMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMF  762 (971)
T ss_dssp             HHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence            999999999988999987777433    3333333555555555443

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.77  E-value=4.5e-08  Score=91.35  Aligned_cols=170  Identities=12%  Similarity=0.179  Sum_probs=126.2

Q ss_pred             cCCChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHH
Q 007670           15 KLSDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKI   83 (594)
Q Consensus        15 KLsDrDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkI   83 (594)
                      +=.|.+.+..|+..|-.|+..-+        ...++.++.+|.    ++++.+|.+++.+|+.++.+. .....+  ...
T Consensus        22 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~   97 (210)
T 4db6_A           22 NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALSNIASGGNEQIQAVIDAGA   97 (210)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence            33566788889999988885321        222666666665    457889999999999998654 111111  236


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670           84 INSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK  159 (594)
Q Consensus        84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y  159 (594)
                      ++.+++.|++++..||..|+++|+.|+..-.+..  ..  .++++|+..| .+.++.++..|+.||..++...++. ...
T Consensus        98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~-~~~  175 (210)
T 4db6_A           98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-KQA  175 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHH-HHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCcHH-HHH
Confidence            8899999999999999999999999997543221  11  2788888888 5678999999999999999853221 222


Q ss_pred             HH--HHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670          160 LG--RMEVRLERLLKSEVFKAKAAGLVVVGSVI  190 (594)
Q Consensus       160 L~--~L~~RL~klL~s~~fkaK~alL~aIGSiA  190 (594)
                      +-  ..++.|.++|.+++..++..++.+++.++
T Consensus       176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            22  37889999999999999999999998765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.77  E-value=2.9e-08  Score=110.25  Aligned_cols=221  Identities=12%  Similarity=0.088  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA  100 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~  100 (594)
                      ....|+..|-.|+   .++-++.+++.|.....+++|++||.|+.+++.+...+  -..++.+++.+...|.|+|+.|+.
T Consensus       123 vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~D~d~~V~~  197 (618)
T 1w63_A          123 VQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLNEKNHGVLH  197 (618)
T ss_dssp             HHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTTCCCHHHHH
T ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhCCCCHhHHH
Confidence            3445555555544   34445666677766777789999999999999998876  012346778888999999999999


Q ss_pred             HHHHHHHhhchhhhcc--hhHHhHHHHHHHHcc--------------CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 007670          101 TCISTVSSLSPRVGAS--AFVTMLKLLSDALFT--------------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRME  164 (594)
Q Consensus       101 Ac~~ALG~LAe~l~~~--~~~~~lkPL~eaL~~--------------eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~  164 (594)
                      +|+.+++.++..-.+.  .+..+++.|+..|..              ..++-.|....-+|..++..-++ ..+.+-.++
T Consensus       198 ~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L  276 (618)
T 1w63_A          198 TSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDIL  276 (618)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            9999999998764221  111133444443321              24788888877777777653110 011122233


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHH
Q 007670          165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC  244 (594)
Q Consensus       165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~  244 (594)
                      +++.+-+.+......+.+++|+..+...... ......++..|..||.+.|-.+|-+|+++|+.|+...++.|.+|...+
T Consensus       277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i  355 (618)
T 1w63_A          277 AQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTI  355 (618)
T ss_dssp             HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHH
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            3333222221122334455555555543221 111234566777777776777777777777777776666666655544


Q ss_pred             HHHH
Q 007670          245 LKIF  248 (594)
Q Consensus       245 m~sL  248 (594)
                      +..+
T Consensus       356 ~~~l  359 (618)
T 1w63_A          356 VDCL  359 (618)
T ss_dssp             HHGG
T ss_pred             HHHc
Confidence            4443

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.75  E-value=1.2e-07  Score=102.46  Aligned_cols=212  Identities=12%  Similarity=0.123  Sum_probs=153.5

Q ss_pred             CChhHHHHHHHHHHHHHhh--cCC------CC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchH--HHH
Q 007670           17 SDRDTYSQAAKELDSIAAT--VDP------TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KII   84 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~--Lpp------e~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLp--kIL   84 (594)
                      +|.+.+..|++.+..|...  -||      .. +|+|+.+|..   ++.+..+.+|..+|+.+|.+- -....+-  -.+
T Consensus        69 ~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~---~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI  145 (510)
T 3ul1_B           69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI  145 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence            5667888899999886422  122      12 7888888853   355788999999999998754 1111111  368


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCC----ChhHHHHHHHHHHHHHhhcCCCc
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQ----DTNAQVGAALCLAATIDAAQDPD  156 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq----~k~vQ~~Aa~ALaavvE~l~~~i  156 (594)
                      |.+++.|++++..||..|++||+.||.......  ..  ..+.||+..|....    ...++..++.+|..++.+-....
T Consensus       146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~  225 (510)
T 3ul1_B          146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP  225 (510)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence            899999999999999999999999987653211  11  17888888884221    23456678888888887653332


Q ss_pred             -chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          157 -AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       157 -~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                       ......+++-|.++|.+++..++..++.+++.++.......  -.-..+++.|.++|.++++.+|..|+.+|+.|+.
T Consensus       226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~  303 (510)
T 3ul1_B          226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  303 (510)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhc
Confidence             45667899999999999999988888888887764332211  1112367889999999999999999999999865

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=98.75  E-value=8.1e-08  Score=103.96  Aligned_cols=214  Identities=16%  Similarity=0.175  Sum_probs=155.8

Q ss_pred             CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh-cc--ccchHHHH
Q 007670           17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH-NL--SPYITKII   84 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~L--------ppe~lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h-~i--sphLpkIL   84 (594)
                      .|.+....|+..|-.||.+=        ....+++++.+|.... ........+.+..+|..++.+. ..  .-.+..++
T Consensus       174 ~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l  253 (529)
T 3tpo_A          174 PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL  253 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence            46668888888888888642        2334889999886542 2223345677777888887766 22  22457899


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL  160 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL  160 (594)
                      |.+++.|++++..|+..++++|+.++..-.+.. ..   .++++|++.| ...+..+|..|+.||..++...+. ....+
T Consensus       254 p~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~-~~~~i  331 (529)
T 3tpo_A          254 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDE-QTQKV  331 (529)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccchH-HHHHH
Confidence            999999999999999999999999987653221 11   1778888877 678899999999999988754221 11111


Q ss_pred             --HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          161 --GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       161 --~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                        ...++.|.++|++++..+|..+..+|+-++....... ..+ ..++|.|...|.+.++.+|+.|+-+|+.++..
T Consensus       332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence              1256678899999998899888999998875432221 111 24789999999999999999999999999864

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.73  E-value=5.6e-07  Score=103.02  Aligned_cols=222  Identities=13%  Similarity=0.072  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCCh
Q 007670           21 TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNS   96 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds   96 (594)
                      ....|+-.|-.++..++.+.   ++.++..+.. ..++.|.+|..++.++|..++.. .-.+||+.+++.|+..|.|  +
T Consensus       465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~  541 (963)
T 2x19_B          465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--P  541 (963)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--G
T ss_pred             HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--c
Confidence            55667888888888886432   6777776654 34457789999999999998764 2236899999999999977  7


Q ss_pred             hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cC--CChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHH
Q 007670           97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE--QDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERL  170 (594)
Q Consensus        97 ~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~e--q~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~kl  170 (594)
                      .|+.+|+.|+..|++.+.+. +.-++.+|+..|+   ..  -+...+..+.-|+..++..++ +...+|+..+|+.+...
T Consensus       542 ~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~  620 (963)
T 2x19_B          542 ELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ  620 (963)
T ss_dssp             GGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999876432 2224455544442   22  356778888999999998876 44578888888776666


Q ss_pred             hc----CC-chhh---HHHHHHHHHHHHhcCcC-----------------------cCCchHHHHHHHHhhhc--CCcHH
Q 007670          171 LK----SE-VFKA---KAAGLVVVGSVIGSGAV-----------------------DGSGLKGLVSCLLGFLS--SQDWA  217 (594)
Q Consensus       171 L~----s~-~fka---K~alL~aIGSiA~a~~~-----------------------~~pyf~~lm~~L~e~L~--seDw~  217 (594)
                      ++    ++ +...   ...++++|++++.+-+.                       ..+++..+++.+...|.  .++-.
T Consensus       621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  700 (963)
T 2x19_B          621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ  700 (963)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchH
Confidence            53    22 2222   23577888888855321                       12467778887777664  24568


Q ss_pred             HHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670          218 ARKAAAEALWRLAVVEKDAVPEFKGKCLK  246 (594)
Q Consensus       218 lRKaAaDaLg~IA~a~gd~f~py~~~~m~  246 (594)
                      ++..++.+++.++...|+.|.||...++.
T Consensus       701 v~e~~~~~l~~~~~~~~~~~~~~l~~~~~  729 (963)
T 2x19_B          701 VVEAVCAIFEKSVKTLLDDFAPMVPQLCE  729 (963)
T ss_dssp             HHHHHHHHHHHHHHHSSSTTGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccHHHHHH
Confidence            88899999999999999989999877764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.9e-07  Score=92.98  Aligned_cols=184  Identities=14%  Similarity=0.098  Sum_probs=139.3

Q ss_pred             hhhcCCCCCCcchHHHHHHHHHHHhhh-c------cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----
Q 007670           48 ILSTNSSDKPGVRKECIHVIATLSNSH-N------LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----  116 (594)
Q Consensus        48 L~e~~ss~kp~~RKaaI~lLGvlae~h-~------isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~----  116 (594)
                      |.+-+.|-+|-.|++|+-.|..+.... .      ..+.+..+++.+.+.+.|++..|...+++++..|+..+...    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            346677899999999999998876654 1      12235567788889999999999999999999999876421    


Q ss_pred             h----h-HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670          117 A----F-VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG  191 (594)
Q Consensus       117 ~----~-~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~  191 (594)
                      .    . ..+++.|++-.+++..+.+...|..||..+++...     .+..+++.+...+++.+.+++...+..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            1    1 12777788775577888888888888888888643     234566778889999999999999999998774


Q ss_pred             c-CcC-c--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCc
Q 007670          192 S-GAV-D--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDA  236 (594)
Q Consensus       192 a-~~~-~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~  236 (594)
                      . |.. .  .+.++.+++.|..+|.+.|-.+|.+|.++++.|-..+|+.
T Consensus       169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            4 211 1  1456678888888899999999999999999999888853

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=98.71  E-value=1.3e-07  Score=102.32  Aligned_cols=211  Identities=14%  Similarity=0.200  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc--hHHHHHHHHhhhcCC
Q 007670           22 YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDK   94 (594)
Q Consensus        22 ~r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph--LpkIL~~IvrrLkD~   94 (594)
                      .+.|+..|-.++.+-.+..    +..+++.|.....++++.++..+..+|+.++.+. .....  -..+++.++..|.++
T Consensus       226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~  305 (529)
T 3tpo_A          226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT  305 (529)
T ss_dssp             HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence            4567777777777653322    3445666666667788899999999999998765 11111  134678888899999


Q ss_pred             ChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHH
Q 007670           95 NSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLER  169 (594)
Q Consensus        95 Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~k  169 (594)
                      +..|+..|+.+||.++..-....  ..  ..+++|...| ...++.+|..||.||..+..+..+.....+. .+++.|+.
T Consensus       306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~  384 (529)
T 3tpo_A          306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG  384 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence            99999999999999986543221  11  1777777777 6788999999999999998753322211222 27888999


Q ss_pred             HhcCCchhhHHHHHHHHHHHHhcCcC-cCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          170 LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       170 lL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      +|.+.++.+|..+..+|+-++..+.. ...|+-  .+|+.|.+.|.+.|..++..++++|..|....
T Consensus       385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988754422 112221  25788999999999999999999999998753

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.64  E-value=1.2e-07  Score=102.34  Aligned_cols=215  Identities=15%  Similarity=0.157  Sum_probs=154.5

Q ss_pred             CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh-ccc--cchHHHH
Q 007670           17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH-NLS--PYITKII   84 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~L--------ppe~lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h-~is--phLpkIL   84 (594)
                      .|.+....|+..|-.||.+-        ....+++++.+|.... ........+.+..+|..++.+. ...  ..+..++
T Consensus       155 ~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l  234 (510)
T 3ul1_B          155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL  234 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHH
Confidence            46678889999999888642        2344888888886432 2223345677888888888766 222  2457899


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH
Q 007670           85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL  160 (594)
Q Consensus        85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL  160 (594)
                      |.+++.|++++..|+..++++|+.|+..-.+.. ..   .++++|++.| ...+..+|..|+.||..++-..+......+
T Consensus       235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~  313 (510)
T 3ul1_B          235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVI  313 (510)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence            999999999999999999999999997653221 11   1677888877 678899999999999988754221111111


Q ss_pred             -HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cc-hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SG-LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       161 -~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-py-f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                       ...++.|.++|++++..+|..+..+|+-++....... .. -..+++.|...|.+.++.+|+.|+-+|+.++..
T Consensus       314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence             1255668889999998898888888888764322211 11 124789999999999999999999999998874

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.64  E-value=1.5e-07  Score=111.68  Aligned_cols=221  Identities=10%  Similarity=0.020  Sum_probs=158.2

Q ss_pred             HHHHHHHhhcCCCC-hHHHHHhhhhcCC--CCCCcchHHHHHHHHHHHhhhc----cccchHHHHHHHHhhhcCC-----
Q 007670           27 KELDSIAATVDPTL-LPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSHN----LSPYITKIINSITRNFRDK-----   94 (594)
Q Consensus        27 ~eLD~LA~~Lppe~-lp~fLs~L~e~~s--s~kp~~RKaaI~lLGvlae~h~----isphLpkIL~~IvrrLkD~-----   94 (594)
                      +.|..++ +|.++. +..+++.|.....  ...|..+.+.+-++|.++ |+.    =.++||.+|+.++.....+     
T Consensus       461 d~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~  538 (1073)
T 3gjx_A          461 ETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN  538 (1073)
T ss_dssp             HHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchHHHHHHHHhcccccccccch
Confidence            4444444 666555 8888888765433  356899999999999998 552    3479999999999777433     


Q ss_pred             ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC--------cchhHHHH
Q 007670           95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP--------DAGKLGRM  163 (594)
Q Consensus        95 Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~--------i~~yL~~L  163 (594)
                      -..|+...++++|++.+|+...+  .||+|.+..|+   .+.++.||.+||.|+.++++.+...        ..||+..|
T Consensus       539 k~~vas~i~~vlgrY~~wl~~h~--~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~i  616 (1073)
T 3gjx_A          539 KAIIASNIMYIVGQYPRFLRAHW--KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEI  616 (1073)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHhCH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Confidence            56788888999999999996554  35565555554   5789999999999999999997543        24688998


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc---CCchHHHHHHHHhhhc--------------CCcHHHHH-HHHHH
Q 007670          164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD---GSGLKGLVSCLLGFLS--------------SQDWAARK-AAAEA  225 (594)
Q Consensus       164 ~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~---~pyf~~lm~~L~e~L~--------------seDw~lRK-aAaDa  225 (594)
                      +.-+......=..+....++.+||.++.+.+..   ..|+..+|+.+...+.              +.++--+- ..+++
T Consensus       617 l~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~  696 (1073)
T 3gjx_A          617 LNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKT  696 (1073)
T ss_dssp             HTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhh
Confidence            888888775545666777999999999776442   3566666655544432              22332222 34567


Q ss_pred             HHHHHHHcCCccchhhhHHH-HHHHhc
Q 007670          226 LWRLAVVEKDAVPEFKGKCL-KIFESK  251 (594)
Q Consensus       226 Lg~IA~a~gd~f~py~~~~m-~sLEs~  251 (594)
                      ..++|.+.|..|.|+...+. ..|+-+
T Consensus       697 n~~v~~~~g~~f~~~~~~i~~~~l~~y  723 (1073)
T 3gjx_A          697 NVRACKAVGHPFVIQLGRIYLDMLNVY  723 (1073)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence            78889999999999987775 344433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.64  E-value=2.3e-07  Score=95.05  Aligned_cols=174  Identities=15%  Similarity=0.132  Sum_probs=127.2

Q ss_pred             chHHHHHHHHHHHhhh-cccc-chHHHHHHHHh-hhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHcc
Q 007670           59 VRKECIHVIATLSNSH-NLSP-YITKIINSITR-NFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFT  131 (594)
Q Consensus        59 ~RKaaI~lLGvlae~h-~isp-hLpkIL~~Ivr-rLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~  131 (594)
                      .|..++-.|..+++.. .... .---.+|.++. .|+.+++.||..|+++||.++..-.+.  -..  ..++||+..|..
T Consensus        56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~  135 (296)
T 1xqr_A           56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  135 (296)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence            5666777777777654 1101 11124566777 999999999999999999998754321  111  288999988854


Q ss_pred             CCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH--HHHHHHH
Q 007670          132 EQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLL  208 (594)
Q Consensus       132 eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~--~lm~~L~  208 (594)
                      +.+..++..|+.||..++.+-++.....+ ...++.|..+|++++++++.-++.+|+.++....+...++-  .+++.|.
T Consensus       136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv  215 (296)
T 1xqr_A          136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV  215 (296)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence            56789999999999999875332111122 13778899999999999999999999998865433323332  3789999


Q ss_pred             hhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          209 GFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       209 e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +.|.++|..+|..|+.+|+.|+..
T Consensus       216 ~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          216 ALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHcCCChhHHHHHHHHHHHHHhC
Confidence            999999999999999999999975

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.52  E-value=1.8e-06  Score=98.49  Aligned_cols=216  Identities=13%  Similarity=0.086  Sum_probs=149.0

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch-
Q 007670           10 NGLLNKLSDRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI-   80 (594)
Q Consensus        10 l~~L~KLsDrDT~r~A~~eLD~LA~~L-------ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL-   80 (594)
                      +..|..=.|.+.++.|+..|..|+..-       ....++.|+.+|.    ++++.+|++++.+|+.|+... .....+ 
T Consensus       198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~~v~  273 (780)
T 2z6g_A          198 VRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG----SPVDSVLFHAITTLHNLLLHQEGAKMAVR  273 (780)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            334433236678888888888876531       1222666666664    456789999999999998775 222222 


Q ss_pred             -HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670           81 -TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP  155 (594)
Q Consensus        81 -pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~  155 (594)
                       ..+++.+++.|++++..|+..++.+|..|+..-.+.  .+.  ..+.+|+..|-.......+..++.+|..+...  ..
T Consensus       274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~  351 (780)
T 2z6g_A          274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SS  351 (780)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TT
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hH
Confidence             357888899999988899999988888777422111  111  16777888774444555666777777777642  22


Q ss_pred             cchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          156 DAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       156 i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      ..+.+  ...++.|+.+|.+.+...+..++.+++.++...... .....+++.|...|.+++|.+|..|+-+|+.|+..
T Consensus       352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            22222  126788999998888777777888888887544332 33578999999999999999999999999999763

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.51  E-value=4.7e-06  Score=87.76  Aligned_cols=208  Identities=14%  Similarity=0.088  Sum_probs=145.4

Q ss_pred             ChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHHHHH
Q 007670           18 DRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI   87 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL~~I   87 (594)
                      |.+.++.|+..|..|+..      + ....+|.|+..|.    ++++.+|..++.+|+.++... .....+  ...+|.+
T Consensus        73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  148 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM  148 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence            666788888888877643      1 1222667666664    456788999999999987764 222222  4578888


Q ss_pred             HhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH--
Q 007670           88 TRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG--  161 (594)
Q Consensus        88 vrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~--  161 (594)
                      ++.|++++..||.+++.+|+.|+..-.+.  .+.  ..+++|+..|........+..++.+|..+...  +.....+-  
T Consensus       149 ~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~  226 (529)
T 1jdh_A          149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA  226 (529)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--TTHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC--cccHHHHHHC
Confidence            88889888889988888888877532111  111  15777777775444566666777777777642  22223332  


Q ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      ..++.|.++|++++..++..++.+++.++...... .....+++.|...|.+++..+|..|+-+|+.|+..
T Consensus       227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            37788999999888888888888888887554322 33468899999999999999999999999999763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.51  E-value=3.9e-06  Score=92.72  Aligned_cols=216  Identities=14%  Similarity=0.087  Sum_probs=152.2

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch-
Q 007670           10 NGLLNKLSDRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI-   80 (594)
Q Consensus        10 l~~L~KLsDrDT~r~A~~eLD~LA~~------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL-   80 (594)
                      +..|..=.|.+.++.|+..|..|+..      + ....++.|+.+|.    ++++.+|+.++.+|+.++... .....+ 
T Consensus        62 v~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~A~~aL~nL~~~~~~~~~~v~  137 (644)
T 2z6h_A           62 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVR  137 (644)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence            33343323667888888888877653      1 2222777776664    456789999999999998764 111111 


Q ss_pred             -HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670           81 -TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP  155 (594)
Q Consensus        81 -pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~  155 (594)
                       ..+++.+++.|++++..++.+++.+|+.|+..-.+.  .+.  ..+++|+..|.......++..++.+|..+..+  ..
T Consensus       138 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~  215 (644)
T 2z6h_A          138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SS  215 (644)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC--TT
T ss_pred             HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC--cc
Confidence             457888899999999999999999998888532111  111  16778888775444566777788888777642  22


Q ss_pred             cchhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          156 DAGKLGR--MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       156 i~~yL~~--L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      ...++-.  .++.|+++|++.+..++..++.+++.++...... .....+++.|...|.++++.+|..|+-+|+.|+..
T Consensus       216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            2333322  6888999999988888888888998887554322 34568899999999999999999999999999763

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.49  E-value=1.9e-06  Score=95.65  Aligned_cols=222  Identities=15%  Similarity=0.202  Sum_probs=135.1

Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcC---
Q 007670           18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRD---   93 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD---   93 (594)
                      +.--.+.|+-.|-.|... .|+.++.|++.|.+...+.++.++-+|+.+|+.++... -...++.+++|.+++.|++   
T Consensus       155 ~~~VRk~A~~al~~l~~~-~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~  233 (618)
T 1w63_A          155 NSYLRKKAALCAVHVIRK-VPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIM  233 (618)
T ss_dssp             CHHHHHHHHHHHHHHHHH-CGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHc
Confidence            333678888888888874 56678889999999998899999999999999997644 1123344455555555443   


Q ss_pred             ------------CChhHHHHHHHHHHhhchhhhcc--hhH---------------------------------------H
Q 007670           94 ------------KNSALQATCISTVSSLSPRVGAS--AFV---------------------------------------T  120 (594)
Q Consensus        94 ------------~Ds~VR~Ac~~ALG~LAe~l~~~--~~~---------------------------------------~  120 (594)
                                  +++-++-..++.++.++..-.+.  .+.                                       .
T Consensus       234 ~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~  313 (618)
T 1w63_A          234 SGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVL  313 (618)
T ss_dssp             SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHH
Confidence                        46667777778887776542100  000                                       0


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL  200 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf  200 (594)
                      .+.+|...| .+.+++++-.|..+|..++..-+.    .+......++.+|++++.-+|..++.++..++..     .-+
T Consensus       314 a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p~----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-----~nv  383 (618)
T 1w63_A          314 AINILGRFL-LNNDKNIRYVALTSLLKTVQTDHN----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG-----NNI  383 (618)
T ss_dssp             HHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHHH----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-----SST
T ss_pred             HHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCHH----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc-----ccH
Confidence            122222222 334455555555555555443221    1222334566667777766777777777665432     114


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHh
Q 007670          201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFES  250 (594)
Q Consensus       201 ~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs  250 (594)
                      +.++..|.+|+.+.|-+.|..++.+|+.+|....+.+..|...+++.|+.
T Consensus       384 ~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~  433 (618)
T 1w63_A          384 RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT  433 (618)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence            56677777777777777777777777777775555555565555555553

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.48  E-value=9.7e-07  Score=93.00  Aligned_cols=184  Identities=9%  Similarity=0.096  Sum_probs=123.3

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hh
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AF  118 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~  118 (594)
                      ++.++..+    .+.++..|+.++.+|+.++....-......++|.+++.|+++++.||..++.+|+.|+..-.+.  .+
T Consensus       229 ~~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  304 (529)
T 1jdh_A          229 MQALGLHL----TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  304 (529)
T ss_dssp             HHHHHTTT----TSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHH----hCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            55555555    4457789999999999998876112246789999999999999999999999999998864221  11


Q ss_pred             H--HhHHHHHHHHcc-CCChhHHHHHHHHHHHHHhhcCCCc--chhH--HHHHHHHHHHhcCCc-hhhHHHHHHHHHHHH
Q 007670          119 V--TMLKLLSDALFT-EQDTNAQVGAALCLAATIDAAQDPD--AGKL--GRMEVRLERLLKSEV-FKAKAAGLVVVGSVI  190 (594)
Q Consensus       119 ~--~~lkPL~eaL~~-eq~k~vQ~~Aa~ALaavvE~l~~~i--~~yL--~~L~~RL~klL~s~~-fkaK~alL~aIGSiA  190 (594)
                      .  ..+++|+..|.. ..++.++..|+.||..+....++..  ...+  ...++.|.++|.++. ..++..++.+|+-++
T Consensus       305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~  384 (529)
T 1jdh_A          305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA  384 (529)
T ss_dssp             HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence            1  167888888853 2347899999999999976433210  1111  124778999999886 477888888888877


Q ss_pred             hcCcCcCCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007670          191 GSGAVDGSGL-KGLVSCLLGFLSSQDWAARKAAAEALWR  228 (594)
Q Consensus       191 ~a~~~~~pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~  228 (594)
                      .......... ..+++.|.+.|.+.++.+|+.|+-+|+-
T Consensus       385 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          385 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             TSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             cChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence            4221111111 2468888888888899999988776664

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.46  E-value=1.4e-06  Score=100.64  Aligned_cols=212  Identities=16%  Similarity=0.165  Sum_probs=152.9

Q ss_pred             CChhHHHHHHHHHHHHHhhcCCC----------ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHH
Q 007670           17 SDRDTYSQAAKELDSIAATVDPT----------LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKI   83 (594)
Q Consensus        17 sDrDT~r~A~~eLD~LA~~Lppe----------~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkI   83 (594)
                      ++....+.|+..|-.|+.+-+|+          .+|+|+.+|..   ..+...+.+++.+|+.|+... -....+  ...
T Consensus       548 ~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~---~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~  624 (810)
T 3now_A          548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ---DCTALENFESLMALTNLASMNESVRQRIIKEQG  624 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST---TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred             CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC---CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence            56678899999999988765432          26777777642   223455679999999998653 111111  135


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670           84 INSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK  159 (594)
Q Consensus        84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y  159 (594)
                      |+.++..|.+++..||.+|+++|+.|+..-.... +.   ..+++|+..| +..+..+|..||.||+.+..+.+..+...
T Consensus       625 l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt~~s~~~~~~i  703 (810)
T 3now_A          625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKI  703 (810)
T ss_dssp             HHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            7788888889999999999999999986432111 11   1567777666 77889999999999999988533222223


Q ss_pred             H--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHH
Q 007670          160 L--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVV  232 (594)
Q Consensus       160 L--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~se---Dw~lRKaAaDaLg~IA~a  232 (594)
                      +  ...++.|+.+|.++++++|..++.+|+-++..+++...++  ...++.|...|...   +..++..|.++|..|...
T Consensus       704 i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~  783 (810)
T 3now_A          704 LAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY  783 (810)
T ss_dssp             HTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence            3  2478899999999999999999999998887544321111  13688888888654   799999999999998764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.46  E-value=1.5e-06  Score=100.27  Aligned_cols=220  Identities=10%  Similarity=0.070  Sum_probs=153.2

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC---------------------------------------C-hHHHHHh
Q 007670            8 SVNGLLNKLSDRDTYSQAAKELDSIAATVDPT---------------------------------------L-LPTFLSC   47 (594)
Q Consensus         8 rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe---------------------------------------~-lp~fLs~   47 (594)
                      ++++.|. -.|...+.-|+..|-.|+..-+..                                       . +|+|+.+
T Consensus       425 ~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L  503 (810)
T 3now_A          425 ALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL  503 (810)
T ss_dssp             HHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence            3444443 256667788888888888743211                                       2 6666666


Q ss_pred             hhhcCCCCCCcchHHHHHHHHHHHhhhccccch--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc-chh-----H
Q 007670           48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAF-----V  119 (594)
Q Consensus        48 L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-~~~-----~  119 (594)
                      +.    ++++.+|++++.+|+.+|...-....+  .-.+|.+++.|++.+..+|..|++||+.|+..... ..+     .
T Consensus       504 L~----s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~  579 (810)
T 3now_A          504 AK----TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL  579 (810)
T ss_dssp             HT----CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred             Hc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence            64    577899999999999998543111111  13577888888999999999999999999865421 111     1


Q ss_pred             HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCC
Q 007670          120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS  198 (594)
Q Consensus       120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~p  198 (594)
                      ..++||+..|..+.+...+.-|+.||..+....++.....+. ..+++|..+|.+++..++.+++.+|+-++........
T Consensus       580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~  659 (810)
T 3now_A          580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM  659 (810)
T ss_dssp             HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred             cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence            278999987742324344557889998888753211111121 2578999999999999999999999998753221112


Q ss_pred             ch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          199 GL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       199 yf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      +.  ...++.|..+|.+++-.+|++|+-+|+.|+..
T Consensus       660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~  695 (810)
T 3now_A          660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSV  695 (810)
T ss_dssp             HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence            22  24789999999999999999999999999973

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.39  E-value=1.6e-07  Score=83.24  Aligned_cols=120  Identities=12%  Similarity=0.142  Sum_probs=86.0

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      -++.+..|...+.++++.+|..++.+||.+...     .    ++.+++.|+|+|+.||.+++++||.+...-       
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~-------   73 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----A----FEPLLESLSNEDWRIRGAAAWIIGNFQDER-------   73 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSST-----T----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHH-------
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----H----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHH-------
Confidence            344455555556678899999999998865321     1    478889999999999999999999998533       


Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG  187 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIG  187 (594)
                      .+.+|...| .+.++.|...|+.+|..+.+          +..++.|.++|++++..++..++.+++
T Consensus        74 a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           74 AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            678888888 67899999999999988742          345566777777777777777776665

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.37  E-value=8e-08  Score=85.16  Aligned_cols=124  Identities=15%  Similarity=0.094  Sum_probs=90.2

Q ss_pred             cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670           78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA  157 (594)
Q Consensus        78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~  157 (594)
                      .+.+.-++.++..|+|+++.||.+++++||.+....        +.+|+..| .+.++.++..|+.+|..+.+       
T Consensus         8 ~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~--------~~~L~~~L-~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A            8 HHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA--------FEPLLESL-SNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             -------------CCSSCCCSSSSCCSSTTSCSSTT--------HHHHHHGG-GCSCHHHHHHHHHHHGGGCS-------
T ss_pred             ccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH--------HHHHHHHH-cCCCHHHHHHHHHHHHhcCC-------
Confidence            345666788899999999999999999999886532        36677766 68899999999998877542       


Q ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670          158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL  229 (594)
Q Consensus       158 ~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I  229 (594)
                         +..++.|.++|++++..++..++.++|.+.         -+..++.|.+.|.++|+.+|.+|+.+|+.|
T Consensus        72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------GERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence               234667778888889999999888888652         146788999999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.35  E-value=1.4e-05  Score=93.86  Aligned_cols=201  Identities=13%  Similarity=0.200  Sum_probs=159.8

Q ss_pred             CcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----hhHH-hHHHHHHH
Q 007670           57 PGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----AFVT-MLKLLSDA  128 (594)
Q Consensus        57 p~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~----~~~~-~lkPL~ea  128 (594)
                      ...|+++...++.+..+.   ...+  .+++..+.+.++|--+.  ..++.+++.||+.....    |... +++.++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  103 (986)
T 2iw3_A           28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN  103 (986)
T ss_dssp             TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence            567788877777775543   3333  38999999999997666  99999999999877532    2222 55666666


Q ss_pred             HccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcC-cCCchHHHHHH
Q 007670          129 LFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSC  206 (594)
Q Consensus       129 L~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~  206 (594)
                      + +++++.|+.+|-.|+++++.+++.   ..+..++|.|+..|.+. ..+.|.++|.+|+.++..+.+ ..-+++.++|.
T Consensus       104 ~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~  179 (986)
T 2iw3_A          104 A-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPV  179 (986)
T ss_dssp             T-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             h-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcc
Confidence            6 789999999999999999999875   34577888999988766 689999999999999965544 34789999999


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH---HHHHHhhcCCCC
Q 007670          207 LLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK---MIEAWKQVPDLS  267 (594)
Q Consensus       207 L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK---~i~lWk~i~~v~  267 (594)
                      +.+++.+.--++.++|.++|-.+...++ ..+.||...+++++.+.  ++   +++.-.+.-.|.
T Consensus       180 ~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p--~~~~~~~~~l~~~tfv~  242 (986)
T 2iw3_A          180 LSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP--TEVPETVHLLGATTFVA  242 (986)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT--THHHHHHHHHTTCCCCS
T ss_pred             hHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh--hhhHHHHHHhhcCeeEe
Confidence            9999999999999999999999999887 68888888888887765  44   666666666664

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.33  E-value=3.1e-06  Score=94.46  Aligned_cols=215  Identities=16%  Similarity=0.140  Sum_probs=132.3

Q ss_pred             HHHhhcCCCChHHHHHhhhhcC--CCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 007670           31 SIAATVDPTLLPTFLSCILSTN--SSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVS  107 (594)
Q Consensus        31 ~LA~~Lppe~lp~fLs~L~e~~--ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG  107 (594)
                      .|+.--.|+-++.++..|....  .+.+|++||.|+.++.-+...+ -+.++ +.+++.+.+.|.|+|+.|..+|+.++.
T Consensus       134 ~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~  212 (621)
T 2vgl_A          134 CIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-GDWTSRVVHLLNDQHLGVVTAATSLIT  212 (621)
T ss_dssp             HHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-hhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence            3333334544666666666666  7788999999999999998866 33332 466777788889999999999998888


Q ss_pred             hhchhhhcchhHHhHHHHHHHH---cc--CC-----------ChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670          108 SLSPRVGASAFVTMLKLLSDAL---FT--EQ-----------DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL  171 (594)
Q Consensus       108 ~LAe~l~~~~~~~~lkPL~eaL---~~--eq-----------~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL  171 (594)
                      .++..-.+ .+..+++.++..|   +.  +-           ++-.|....-.|..+...-+......+..++++++..+
T Consensus       213 ~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~  291 (621)
T 2vgl_A          213 TLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA  291 (621)
T ss_dssp             HHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            88765421 1111222222222   11  11           56677655555544432101111234444555555433


Q ss_pred             -cCC---chh----hHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--Cccchhh
Q 007670          172 -KSE---VFK----AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFK  241 (594)
Q Consensus       172 -~s~---~fk----aK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g--d~f~py~  241 (594)
                       +.+   ..+    ..+.+++|+..+.... ...++...++..|..||.+.|-.+|-.|+++|..|+...+  +.|.+|.
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~  370 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHI  370 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTH
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHH
Confidence             122   111    2345777887777654 2346677889999999998999999999999999987654  4555555


Q ss_pred             hHHHHHH
Q 007670          242 GKCLKIF  248 (594)
Q Consensus       242 ~~~m~sL  248 (594)
                      ..++..|
T Consensus       371 ~~i~~~L  377 (621)
T 2vgl_A          371 ETVINAL  377 (621)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5444444

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.33  E-value=3.4e-06  Score=96.21  Aligned_cols=175  Identities=11%  Similarity=0.071  Sum_probs=131.5

Q ss_pred             cCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch----hHHhHHHHH
Q 007670           51 TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA----FVTMLKLLS  126 (594)
Q Consensus        51 ~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~----~~~~lkPL~  126 (594)
                      .+.++....|++++.++..+.+..+    ....||.+++.|+++|+.||..|+.+|+.|+..-....    ...++.+|+
T Consensus       123 ~L~~~~~~~r~~a~~~l~~~~~~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv  198 (780)
T 2z6g_A          123 RLAEPSQMLKHAVVNLINYQDDAEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV  198 (780)
T ss_dssp             ---CCSCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCccHHHHHHHHHHHHhhhHHHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHH
Confidence            3445677889999998886643322    26678888888899999999999999999998653111    113788899


Q ss_pred             HHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cch-HH
Q 007670          127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KG  202 (594)
Q Consensus       127 eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf-~~  202 (594)
                      ..|..+.+..++..|+.+|..+.....  ....+.  ..++.|+++|++++..++..++.+++.++....... .+. ..
T Consensus       199 ~~L~~~~d~~vr~~Aa~aL~~Ls~~~~--~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g  276 (780)
T 2z6g_A          199 RTMQNTNDVETARCTSGTLHNLSHHRE--GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG  276 (780)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhCCch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC
Confidence            988555689999999999999765421  111222  378899999999998999999999999886543332 221 35


Q ss_pred             HHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          203 LVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       203 lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      +++.|.+.|.++++.+|..|+++|..++.
T Consensus       277 ~v~~Lv~lL~~~~~~v~~~a~~aL~~La~  305 (780)
T 2z6g_A          277 GLQKMVALLNKTNVKFLAITTDCLQILAY  305 (780)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            78999999999999999999999998875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.31  E-value=4.3e-06  Score=98.29  Aligned_cols=216  Identities=15%  Similarity=0.160  Sum_probs=163.5

Q ss_pred             HHhhcCCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccccchHHHHH
Q 007670           11 GLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKIIN   85 (594)
Q Consensus        11 ~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~   85 (594)
                      .+|..++|.+  -...|...++.|+..++|+.+..+|+.|.+++. +.||..+-+++.+|+.+++.+  .+.-.||.|+|
T Consensus        99 ~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p  178 (986)
T 2iw3_A           99 AICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIP  178 (986)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhc
Confidence            4566678866  566677799999999999987777887777754 348999999999999999887  88899999999


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCcchhHHHH
Q 007670           86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPDAGKLGRM  163 (594)
Q Consensus        86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l--~~~i~~yL~~L  163 (594)
                      .+....-|.-+-|..|+..|+..+|.-+...-..-|++-|+++|. +++. |+    -|+.++-...  -+...|-|.-|
T Consensus       179 ~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~-~p~~-~~----~~~~~l~~~tfv~~v~~~~l~~~  252 (986)
T 2iw3_A          179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA-DPTE-VP----ETVHLLGATTFVAEVTPATLSIM  252 (986)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH-CTTH-HH----HHHHHHTTCCCCSCCCHHHHHHH
T ss_pred             chHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc-Chhh-hH----HHHHHhhcCeeEeeecchhHHHH
Confidence            999999999999999999999999987743222238899999994 4443 33    3444444432  23335788899


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHH
Q 007670          164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       164 ~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~lm~~L~e~L~-seDw~lRKaAaDaLg~IA~a  232 (594)
                      .|-|.+-|+......|....-.|.-+..--.+   .-||++.++|.|..... -.|=++|..|..|+.+|-.+
T Consensus       253 ~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          253 VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            99999999887666666655566665533222   24888888999887654 46888888887777777554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.28  E-value=3.6e-05  Score=75.19  Aligned_cols=187  Identities=16%  Similarity=0.227  Sum_probs=143.3

Q ss_pred             HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670           43 TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT  120 (594)
Q Consensus        43 ~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~  120 (594)
                      .||..+..+...+-|.++|-++..+-++++.+  .+.|.+.|++..+-+   +----.-++...++|++|..-  +..+.
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~--Pe~v~  106 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEK--PELVK  106 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhC--HHHHH
Confidence            46777777788888999999999999999999  888999998876654   233346688899999999765  22222


Q ss_pred             -hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-C
Q 007670          121 -MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-S  198 (594)
Q Consensus       121 -~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-p  198 (594)
                       +++-||+.. .--++.+.++.+|+|..+.-+-+    ..++.+..-++-+|.+++-.-|-++|..|+++    |+.+ -
T Consensus       107 ~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~~~  177 (253)
T 2db0_A          107 SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAM----GENSFK  177 (253)
T ss_dssp             HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTTHH
T ss_pred             hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccCcc
Confidence             444444444 23388899999999998876532    46777888899999999988899999888842    4443 6


Q ss_pred             chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHH
Q 007670          199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC  244 (594)
Q Consensus       199 yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~  244 (594)
                      |..+.+|.|...|.+.|--+|..|.|+|+-+|+.- +.|++-..+.
T Consensus       178 yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~~k  222 (253)
T 2db0_A          178 YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVIKR  222 (253)
T ss_dssp             HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHHH
T ss_pred             ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence            77777899999999999999999999999999843 3355544333

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.25  E-value=5.5e-06  Score=92.50  Aligned_cols=172  Identities=18%  Similarity=0.201  Sum_probs=130.6

Q ss_pred             cCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc
Q 007670           51 TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF  130 (594)
Q Consensus        51 ~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~  130 (594)
                      ..++++...||-+++.+..+++++  ...+--+++.+.+-|+|+++.||..|+.+||.+...-   -...+++++...|.
T Consensus        82 l~~s~~~~~Krl~YL~l~~~~~~~--~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---~~~~l~~~v~~~l~  156 (621)
T 2vgl_A           82 LLSSNRYTEKQIGYLFISVLVNSN--SELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE---MAEAFAGEIPKILV  156 (621)
T ss_dssp             GGGCSCHHHHHHHHHHHHHSCCCC--HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---HHHHHTTHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHh
Confidence            455788899999999999998776  1123556789999999999999999999999986522   11126666666663


Q ss_pred             -cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHH
Q 007670          131 -TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLL  208 (594)
Q Consensus       131 -~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~  208 (594)
                       ++.++.|...|++|+.++.+..++. .++ +.++++|.++|+.++..++.+++.++..++..... +.++++.+++.|.
T Consensus       157 ~~d~~~~VRK~A~~al~kl~~~~p~~-~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~  234 (621)
T 2vgl_A          157 AGDTMDSVKQSAALCLLRLYRTSPDL-VPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLS  234 (621)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHCGGG-CCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhChhh-cCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence             5789999999999999999954432 232 46788999999988999999999999998865533 5688888888888


Q ss_pred             hhhcC--------------CcHHHHHHHHHHHHHHH
Q 007670          209 GFLSS--------------QDWAARKAAAEALWRLA  230 (594)
Q Consensus       209 e~L~s--------------eDw~lRKaAaDaLg~IA  230 (594)
                      .++..              ++| ++-..++.|+.++
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~w-~qi~il~ll~~~~  269 (621)
T 2vgl_A          235 RIVTSASTDLQDYTYYFVPAPW-LSVKLLRLLQCYP  269 (621)
T ss_dssp             HHHHCCSSSCSTTEETTEESHH-HHHHHHHHGGGSS
T ss_pred             HHHhCCCCCccchhhcCCCCch-HHHHHHHHHHHhC
Confidence            77653              346 4555666666554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.22  E-value=1.2e-05  Score=88.87  Aligned_cols=187  Identities=12%  Similarity=0.048  Sum_probs=135.3

Q ss_pred             ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-cccc--chHHHHHHHHhhhcCC-ChhHHHHHHHHHHhhchhhhc
Q 007670           40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP--YITKIINSITRNFRDK-NSALQATCISTVSSLSPRVGA  115 (594)
Q Consensus        40 ~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isp--hLpkIL~~IvrrLkD~-Ds~VR~Ac~~ALG~LAe~l~~  115 (594)
                      .++.|+..|.    ++++.+|..|+.+|+.++... ....  ..+.+++.+++.|++. ++.||..|+.+|..|+..-..
T Consensus        15 ~i~~Lv~lL~----~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~   90 (644)
T 2z6h_A           15 AIPELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   90 (644)
T ss_dssp             THHHHHHHHT----CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hHHHHHHHHc----CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence            3888888776    467899999999999998766 1111  2357889999999865 889999999999998876421


Q ss_pred             ch-hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670          116 SA-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG  191 (594)
Q Consensus       116 ~~-~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~  191 (594)
                      .. +.  ..+++|+..| ...++.+|..|+.+|..+....+.....+. ...++.|+++|++++.+.+.+++.+++.++.
T Consensus        91 ~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~  169 (644)
T 2z6h_A           91 LLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  169 (644)
T ss_dssp             HHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence            01 11  1778888877 667899999999999999886433222222 3488999999999988888888888988885


Q ss_pred             cCcCcC--CchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHH
Q 007670          192 SGAVDG--SGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLAV  231 (594)
Q Consensus       192 a~~~~~--pyf~~lm~~L~e~L~se-Dw~lRKaAaDaLg~IA~  231 (594)
                      ...+..  -.-...++.|..+|.+. ...++..|+.+|..++.
T Consensus       170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            322211  01113567777777654 46777888888888764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.21  E-value=9.7e-06  Score=84.86  Aligned_cols=219  Identities=16%  Similarity=0.115  Sum_probs=145.1

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-------CCCCCCcchHHHHHHHHHHHhhh-c
Q 007670            4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-N   75 (594)
Q Consensus         4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~-------~ss~kp~~RKaaI~lLGvlae~h-~   75 (594)
                      +.+...+.+|.+|+-++..|-++-++         ..+++++..|...       ..+..+..|+++..+|..||.+. -
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~---------G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~  117 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNEL---------GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA  117 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHT---------THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHc---------CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            44455566666665334444443322         2277777777311       12234678999999999998665 1


Q ss_pred             cccc---hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh---hcchhH--HhHHHHHHHHccCCChhHHHHHHHHHHH
Q 007670           76 LSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRV---GASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAA  147 (594)
Q Consensus        76 isph---LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l---~~~~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaa  147 (594)
                      ....   ..-++|.+++.|+.++..|+..++.+|+.|+..-   .+....  -.++||+..|....+..++..|+.||-.
T Consensus       118 ~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n  197 (354)
T 3nmw_A          118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN  197 (354)
T ss_dssp             HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2122   3457999999999999999999999999998741   111222  1799999987666678899888888888


Q ss_pred             HHhhcCCCcchhH--HHHHHHHHHHhcCCch----hhHHHHHHHHHHHHh---cCcCcCCch--HHHHHHHHhhhcCCcH
Q 007670          148 TIDAAQDPDAGKL--GRMEVRLERLLKSEVF----KAKAAGLVVVGSVIG---SGAVDGSGL--KGLVSCLLGFLSSQDW  216 (594)
Q Consensus       148 vvE~l~~~i~~yL--~~L~~RL~klL~s~~f----kaK~alL~aIGSiA~---a~~~~~pyf--~~lm~~L~e~L~seDw  216 (594)
                      +.-..++.-....  .-.++.|+++|.+++.    .++..+..+|..++.   ...+....+  ...++.|.+.|.+.+.
T Consensus       198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~  277 (354)
T 3nmw_A          198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL  277 (354)
T ss_dssp             HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred             HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence            7652211111222  3477889999987643    366666677777664   222211111  2368999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007670          217 AARKAAAEALWRLAV  231 (594)
Q Consensus       217 ~lRKaAaDaLg~IA~  231 (594)
                      .+++.|+-+|+.|+.
T Consensus       278 ~v~~~A~~aL~nLa~  292 (354)
T 3nmw_A          278 TIVSNACGTLWNLSA  292 (354)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999974

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.20  E-value=9e-05  Score=75.35  Aligned_cols=176  Identities=15%  Similarity=0.110  Sum_probs=135.6

Q ss_pred             CCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch------h-HHhHHHHH
Q 007670           56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA------F-VTMLKLLS  126 (594)
Q Consensus        56 kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~------~-~~~lkPL~  126 (594)
                      ++-.|-+++-.|--..+..  .+...+.-++..+.=|+.|.+..|-..|++.|..+.+.+.+..      + ..+++.|+
T Consensus        59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lv  138 (266)
T 2of3_A           59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL  138 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            5555555555554444433  5556777788888889999999999999999999988886531      1 24888889


Q ss_pred             HHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHH--
Q 007670          127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLV--  204 (594)
Q Consensus       127 eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm--  204 (594)
                      +-| |+++..+-..+-.+|..+.+..+      ..++.+++...+++.+.++|...+..|++++.--|..   ....+  
T Consensus       139 eKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~  208 (266)
T 2of3_A          139 LKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSV  208 (266)
T ss_dssp             HGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCH
T ss_pred             HHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccc
Confidence            999 88888887777777766665321      3447788888999999999999999999999554443   23456  


Q ss_pred             -HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhh
Q 007670          205 -SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK  241 (594)
Q Consensus       205 -~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~  241 (594)
                       +.+..+|.+.|-.+|.+|+.||..+=..+|+.+.-|.
T Consensus       209 ~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l  246 (266)
T 2of3_A          209 EKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA  246 (266)
T ss_dssp             HHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence             8899999999999999999999999988998666564

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.18  E-value=1.6e-05  Score=86.13  Aligned_cols=191  Identities=14%  Similarity=0.122  Sum_probs=132.7

Q ss_pred             hHHHHHhhhhc-------CCCCCCcchHHHHHHHHHHHhhh-ccccc---hHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670           41 LPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-NLSPY---ITKIINSITRNFRDKNSALQATCISTVSSL  109 (594)
Q Consensus        41 lp~fLs~L~e~-------~ss~kp~~RKaaI~lLGvlae~h-~isph---LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L  109 (594)
                      +++++..|...       ..+.++..++++..+|..||.+. .....   ..-+||.+++.|+.++..|+..++++|+.|
T Consensus       191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL  270 (458)
T 3nmz_A          191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL  270 (458)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            78888888421       11234668999999999998765 12122   355799999999999999999999999999


Q ss_pred             chhh---hcchhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcCCch----hh
Q 007670          110 SPRV---GASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVF----KA  178 (594)
Q Consensus       110 Ae~l---~~~~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s~~f----ka  178 (594)
                      +..-   .+....  -.++||++.|....+..++..|+.||-.+.-..++.-....  .-.++-|.++|.+..-    .+
T Consensus       271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v  350 (458)
T 3nmz_A          271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI  350 (458)
T ss_dssp             TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred             hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence            8741   111122  17999999886666888999888888887652211111121  2367778888887643    35


Q ss_pred             HHHHHHHHHHHHh---cCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          179 KAAGLVVVGSVIG---SGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       179 K~alL~aIGSiA~---a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      +..+..+|..++.   ...+....+  ...++.|.+.|.+.+..+++.|+-+|+.|+.
T Consensus       351 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence            6666677777664   222221111  2368899999999999999999999999984

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.12  E-value=2.7e-05  Score=77.36  Aligned_cols=176  Identities=10%  Similarity=0.061  Sum_probs=130.6

Q ss_pred             hcCCChh--HHHHHHHHHHHHHhhcCCC----C----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--------c
Q 007670           14 NKLSDRD--TYSQAAKELDSIAATVDPT----L----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--------N   75 (594)
Q Consensus        14 ~KLsDrD--T~r~A~~eLD~LA~~Lppe----~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--------~   75 (594)
                      .+|.+..  .+.-|+++|..+....+.+    .    +..+...+.....+.+..+-..++.++..++..+        .
T Consensus        16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~   95 (278)
T 4ffb_C           16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH   95 (278)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred             HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            3454444  7788899998877765322    1    2222334445556678889999999999987754        3


Q ss_pred             cccchHHHHHHHHhh-hcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670           76 LSPYITKIINSITRN-FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD  154 (594)
Q Consensus        76 isphLpkIL~~Ivrr-LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~  154 (594)
                      ..+++..++|.|+.+ |.|+...+|.++..++-.+++...  +...++..++.+| ...++.++.+++.+|..+++..+.
T Consensus        96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~  172 (278)
T 4ffb_C           96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGL  172 (278)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCC
Confidence            445688899988865 899999999999999988876652  2223455555555 678999999999999999998654


Q ss_pred             Cc---chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          155 PD---AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       155 ~i---~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                      ..   .+.++.+++-+.++|++.+..+|.+++.+++.+-..
T Consensus       173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            43   346788999999999999999999999999988743

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.12  E-value=4.3e-05  Score=89.37  Aligned_cols=230  Identities=8%  Similarity=0.018  Sum_probs=151.6

Q ss_pred             cCCChhHHHHHHHHHHHHHhhc--CCCC---hHHHH----HhhhhcCC---CC-----CC--------------cchHHH
Q 007670           15 KLSDRDTYSQAAKELDSIAATV--DPTL---LPTFL----SCILSTNS---SD-----KP--------------GVRKEC   63 (594)
Q Consensus        15 KLsDrDT~r~A~~eLD~LA~~L--ppe~---lp~fL----s~L~e~~s---s~-----kp--------------~~RKaa   63 (594)
                      ...|++....|++-+-.++..+  .+..   +.+++    ..+.....   ..     ++              ..||++
T Consensus       354 ~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~  433 (1049)
T 3m1i_C          354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSE  433 (1049)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHH
Confidence            4567788888888888888754  2211   33333    33322111   00     11              225555


Q ss_pred             HHHHHHHHhhhccccchHHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc--C------C
Q 007670           64 IHVIATLSNSHNLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT--E------Q  133 (594)
Q Consensus        64 I~lLGvlae~h~isphLpkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~--e------q  133 (594)
                      --+|-.++... -.+-++.+++.+.+.+..  ++-..|+|++.++|++++.+.+.....++..++..|..  +      +
T Consensus       434 ~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~  512 (1049)
T 3m1i_C          434 REVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN  512 (1049)
T ss_dssp             HHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH
T ss_pred             HHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc
Confidence            55555555322 223455666666666653  55678999999999999887543222244444444431  1      2


Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-Cc--------CCchHHHH
Q 007670          134 DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VD--------GSGLKGLV  204 (594)
Q Consensus       134 ~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~--------~pyf~~lm  204 (594)
                      .+.++..+|.++.++.+-.... .+||+.+++.|+..|.+++.+++.++..++..++...+ .+        .||++.+|
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il  591 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII  591 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence            3445556888888776654322 37999999999999999889999999999999885432 22        39999999


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--CccchhhhHHHH
Q 007670          205 SCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLK  246 (594)
Q Consensus       205 ~~L~e~L~seDw~lRKaAaDaLg~IA~a~g--d~f~py~~~~m~  246 (594)
                      ..|...+..-+-..+....++++.|+.+.+  +...+|...+|.
T Consensus       592 ~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~  635 (1049)
T 3m1i_C          592 RDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQ  635 (1049)
T ss_dssp             HTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999998887665566788999999999887  467777777554

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.11  E-value=9.9e-06  Score=85.42  Aligned_cols=224  Identities=14%  Similarity=0.083  Sum_probs=129.7

Q ss_pred             HHHhhcC---CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHH
Q 007670           10 NGLLNKL---SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS   86 (594)
Q Consensus        10 l~~L~KL---sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~   86 (594)
                      .-...||   .|-.-.|+..-.|..++.. +.+.| ...+.|..-.+++++.+|--||+.|+-+...    ..++.|.+.
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~l~~~  143 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQAIERY  143 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHHHHHH
Confidence            3334455   2444777888888888776 44446 7788887778899999999999999988554    357889999


Q ss_pred             HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-----------C
Q 007670           87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAA-----------Q  153 (594)
Q Consensus        87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l-----------~  153 (594)
                      |.+.|.|.++-||.+|+.+...|....   |...  |+.-+-+++ .+.++.||..|..+|..+.+.-           .
T Consensus       144 lk~~L~d~~pyVRk~A~l~~~kL~~~~---pe~v~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~  219 (355)
T 3tjz_B          144 MKQAIVDKVPSVSSSALVSSLHLLKCS---FDVVKRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT  219 (355)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTTTC---HHHHHTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence            999999999999999999988776555   3222  777777777 7788999977766666655421           1


Q ss_pred             CC-c-chhH--------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007670          154 DP-D-AGKL--------------------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL  211 (594)
Q Consensus       154 ~~-i-~~yL--------------------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L  211 (594)
                      .. + .|+.                    ..+++.|..+|++.+..   .+++|+..|..-.......+..++..|+-||
T Consensus       220 ~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~a---VvyEa~k~I~~l~~~~~~~~~~a~~~L~~fL  296 (355)
T 3tjz_B          220 RHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEM---VVYEAASAIVNLPGCSAKELAPAVSVLQLFC  296 (355)
T ss_dssp             SSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHH---HHHHHHHHHTC-----------CCCTHHHHH
T ss_pred             cCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChH---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            10 0 1111                    11333333344443322   3555555554332211223444567778888


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670          212 SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK  246 (594)
Q Consensus       212 ~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~  246 (594)
                      .+.|-.+|=+|++.|..|+...++.+.....++..
T Consensus       297 ss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~  331 (355)
T 3tjz_B          297 SSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLEN  331 (355)
T ss_dssp             HSSSSSSHHHHHHCC--------------------
T ss_pred             cCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence            88888899999999999988877777665444433

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.02  E-value=4e-05  Score=80.23  Aligned_cols=208  Identities=15%  Similarity=0.110  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh---h---ccccchHHHH
Q 007670           20 DTYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---H---NLSPYITKII   84 (594)
Q Consensus        20 DT~r~A~~eLD~LA~~Lp--------pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~---h---~isphLpkIL   84 (594)
                      +.++.|+..|-.|+..=+        ... ||+|+..|.    ++++.++..+.-+|+.|+.+   .   .+..  .-.+
T Consensus        99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~I  172 (354)
T 3nmw_A           99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSV  172 (354)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCH
Confidence            356778888888775322        122 666666654    57788999999999999864   1   2211  1346


Q ss_pred             HHHHhh-hcCCChhHHHHHHHHHHhhchhhhc--chhH---HhHHHHHHHHccCCCh---hHHHHHHHHHHHHHhhc--C
Q 007670           85 NSITRN-FRDKNSALQATCISTVSSLSPRVGA--SAFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDAA--Q  153 (594)
Q Consensus        85 ~~Ivrr-LkD~Ds~VR~Ac~~ALG~LAe~l~~--~~~~---~~lkPL~eaL~~eq~k---~vQ~~Aa~ALaavvE~l--~  153 (594)
                      |.+++. ++.++..++..++.+|+.|+.+..+  ..+.   -.+++|...|....+.   .++..|+.||..+.-.+  .
T Consensus       173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~  252 (354)
T 3nmw_A          173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN  252 (354)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence            777776 4567888999999999999985432  1222   1788888888533222   47888888888876421  1


Q ss_pred             CCcchhHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670          154 DPDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRL  229 (594)
Q Consensus       154 ~~i~~yL~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~I  229 (594)
                      +.....+.  ..++.|+++|.+.++.++..++.+|+-++....+...++  ...+|.|.+.|.+.+-.+|+.|+.+|..|
T Consensus       253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL  332 (354)
T 3nmw_A          253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL  332 (354)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            11122221  267899999999999999998889988763222222222  24689999999999999999999999999


Q ss_pred             HHHc
Q 007670          230 AVVE  233 (594)
Q Consensus       230 A~a~  233 (594)
                      +..-
T Consensus       333 ~~~~  336 (354)
T 3nmw_A          333 MANR  336 (354)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            9853

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=97.94  E-value=4.8e-05  Score=91.02  Aligned_cols=208  Identities=13%  Similarity=0.023  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHhh----hhcCC---------------------CCCCcchHHHHHHHHHHHhhh--
Q 007670           22 YSQAAKELDSIAATVDPTLLPTFLSCI----LSTNS---------------------SDKPGVRKECIHVIATLSNSH--   74 (594)
Q Consensus        22 ~r~A~~eLD~LA~~Lppe~lp~fLs~L----~e~~s---------------------s~kp~~RKaaI~lLGvlae~h--   74 (594)
                      ++.....|+.++.-.|...+...+..|    .....                     ++.+....+.+..++.+.+++  
T Consensus       440 Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~  519 (1204)
T 3a6p_A          440 RAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR  519 (1204)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            344556677777766655565444444    32111                     122344566778888888887  


Q ss_pred             cc-ccchHH-HHHHHHhhh---cCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cC------------CC
Q 007670           75 NL-SPYITK-IINSITRNF---RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE------------QD  134 (594)
Q Consensus        75 ~i-sphLpk-IL~~IvrrL---kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~e------------q~  134 (594)
                      .. .++++. +++.++..|   ...++.+|..+...+|.|++|+...|  .+++|+++.|+   .+            .+
T Consensus       520 ~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~  597 (1204)
T 3a6p_A          520 TLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAV  597 (1204)
T ss_dssp             HSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred             ccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHH
Confidence            23 467663 555555553   44688999999999999999997555  36666666665   22            35


Q ss_pred             hhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCc---hhhHHHHHHHHHHHHhc-CcC-c-CCchHHHHHHHH
Q 007670          135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIGS-GAV-D-GSGLKGLVSCLL  208 (594)
Q Consensus       135 k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~---fkaK~alL~aIGSiA~a-~~~-~-~pyf~~lm~~L~  208 (594)
                      +.++..||+||.++++.+++...+|++.|...+..++....   -+-+..+..+|+.++.. +.. . ..|+..+|+-+.
T Consensus       598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~  677 (1204)
T 3a6p_A          598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA  677 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999988889999999999999997554   45566788888888643 222 1 377899999999


Q ss_pred             hhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670          209 GFLSSQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       209 e~L~seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      ..+.+++|+.  +..+. ..++..+|
T Consensus       678 ~~w~~~~~~~--~~s~~-~~f~~~~G  700 (1204)
T 3a6p_A          678 SIWLSQDMHR--VLSDV-DAFIAYVG  700 (1204)
T ss_dssp             HHHSCHHHHH--HHHCH-HHHHHHHT
T ss_pred             HHHccHHHHH--hhcCH-HHHHHHhC
Confidence            9998888873  33333 44444444

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=97.93  E-value=8.5e-05  Score=80.54  Aligned_cols=207  Identities=15%  Similarity=0.104  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh---h---ccccchHHHHH
Q 007670           21 TYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---H---NLSPYITKIIN   85 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lp--------pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~---h---~isphLpkIL~   85 (594)
                      .++.|+..|-.|+..=+        ... ||+|+..|.    ++++.++..+.-+|+.|+.+   .   .+..  ...+|
T Consensus       216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~GaI~  289 (458)
T 3nmz_A          216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVK  289 (458)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCCHH
Confidence            46778888888875432        112 556665554    57788999999999999764   1   2211  23577


Q ss_pred             HHHhhh-cCCChhHHHHHHHHHHhhchhhhc-c-hhH---HhHHHHHHHHccCCCh---hHHHHHHHHHHHHHhh--cCC
Q 007670           86 SITRNF-RDKNSALQATCISTVSSLSPRVGA-S-AFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDA--AQD  154 (594)
Q Consensus        86 ~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~~-~-~~~---~~lkPL~eaL~~eq~k---~vQ~~Aa~ALaavvE~--l~~  154 (594)
                      .+++.| +..+..++..++.+|+.|+.+..+ . .+.   ..+++|...|....+.   .++..|+.||..+.-.  ..+
T Consensus       290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~  369 (458)
T 3nmz_A          290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE  369 (458)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence            777764 556788999999999999985532 1 222   1788888888533222   4788888888887642  111


Q ss_pred             CcchhHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          155 PDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       155 ~i~~yL~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      .....+.  ..++.|+++|++.++.++..++.+|+-++....+...++  ...++.|.+.|.+.+..+|+.|+.+|..|+
T Consensus       370 ~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~  449 (458)
T 3nmz_A          370 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM  449 (458)
T ss_dssp             HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            1122222  267899999999999999999999998874322222222  246899999999999999999999999998


Q ss_pred             HHc
Q 007670          231 VVE  233 (594)
Q Consensus       231 ~a~  233 (594)
                      ..-
T Consensus       450 ~~~  452 (458)
T 3nmz_A          450 ANR  452 (458)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            753

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.86  E-value=0.00012  Score=78.16  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=91.9

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHhhcCC-------CC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc
Q 007670            9 VNGLLNKLSDRDTYSQAAKELDSIAATVDP-------TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY   79 (594)
Q Consensus         9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lpp-------e~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph   79 (594)
                      ++..|.. +|.+.+..|+..|..|+.+-++       .. ||+|+.+|.    ++++..++++..+|..|+... -....
T Consensus         7 lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            7 AVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR----SPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT----SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3444433 5667888888888888754332       12 677777775    467789999999999998652 11111


Q ss_pred             h--HHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcchh-H--HhHHHHHHHHc--------cC-------CChhHH
Q 007670           80 I--TKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAF-V--TMLKLLSDALF--------TE-------QDTNAQ  138 (594)
Q Consensus        80 L--pkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~~~-~--~~lkPL~eaL~--------~e-------q~k~vQ  138 (594)
                      +  .-.+|.+++.|+ .++..|+..++++|+.||.. .+... .  ..++||+..|.        +.       .+..++
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            1  134777888888 78899999999999999987 22211 1  37888888882        11       245566


Q ss_pred             HHHHHHHHHHHhh
Q 007670          139 VGAALCLAATIDA  151 (594)
Q Consensus       139 ~~Aa~ALaavvE~  151 (594)
                      ..|+.||..+..+
T Consensus       161 ~~a~~aL~nLs~~  173 (457)
T 1xm9_A          161 FNATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHccC
Confidence            6777777776653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.65  E-value=0.0012  Score=70.32  Aligned_cols=222  Identities=13%  Similarity=0.113  Sum_probs=140.4

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHHhhcCCC------C-hHHHHHhhhh------cCCC------CCCcchHHHHHHHHH
Q 007670            9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPT------L-LPTFLSCILS------TNSS------DKPGVRKECIHVIAT   69 (594)
Q Consensus         9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe------~-lp~fLs~L~e------~~ss------~kp~~RKaaI~lLGv   69 (594)
                      +++.|.+=+|.+....|+..|-.|+.+ +.-      . +|+|+.+|..      ...+      .++.+.+.++.+|..
T Consensus        91 Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~n  169 (457)
T 1xm9_A           91 AVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRN  169 (457)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHH
Confidence            344554445778899999999999976 321      2 6788888832      0011      345566799999999


Q ss_pred             HHhhh----ccc---cchHHHHHHHHhhh--cCCChhHHHHHHHHHHhhchhhh--------------------------
Q 007670           70 LSNSH----NLS---PYITKIINSITRNF--RDKNSALQATCISTVSSLSPRVG--------------------------  114 (594)
Q Consensus        70 lae~h----~is---phLpkIL~~IvrrL--kD~Ds~VR~Ac~~ALG~LAe~l~--------------------------  114 (594)
                      ||...    .+.   .-++.++..+...+  .+++..+.+.|+.+|..|+..+.                          
T Consensus       170 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (457)
T 1xm9_A          170 LSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC  249 (457)
T ss_dssp             HTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------------
T ss_pred             HccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccch
Confidence            97654    222   23444444443322  12555566666666776653210                          


Q ss_pred             ------------------------cc--h--hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc---h-hH--
Q 007670          115 ------------------------AS--A--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA---G-KL--  160 (594)
Q Consensus       115 ------------------------~~--~--~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~---~-yL--  160 (594)
                                              ++  .  ....+++|+..|....++.++..||.||..++-+-.....   . .+  
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~  329 (457)
T 1xm9_A          250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK  329 (457)
T ss_dssp             ----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT
T ss_pred             hhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH
Confidence                                    00  0  0126788888886566789999999999999864332111   1 12  


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcH------HHHHHHHHHHHHHHH
Q 007670          161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDW------AARKAAAEALWRLAV  231 (594)
Q Consensus       161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw------~lRKaAaDaLg~IA~  231 (594)
                      ...+|.|+++|.++++++|..+..+|+-++.-...-...-...|+.|.+.|...+.      .+-.+|+.+|+.|..
T Consensus       330 ~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~  406 (457)
T 1xm9_A          330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA  406 (457)
T ss_dssp             SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT
T ss_pred             cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence            23568899999999999999999999988753211112224578999999987542      466678888887764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.56  E-value=0.0024  Score=74.88  Aligned_cols=189  Identities=14%  Similarity=0.117  Sum_probs=126.4

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcchhH
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAFV  119 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~~~~  119 (594)
                      +..+|..+.+.   ++-.+||.+...||.+.-+--  ...    +.+++.|. |.++.||.+++.++|+-..-...   .
T Consensus       509 i~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~--e~~----~~li~~L~~~~dp~vRygaa~alglAyaGTGn---~  576 (963)
T 4ady_A          509 IHDMFTYSQET---QHGNITRGLAVGLALINYGRQ--ELA----DDLITKMLASDESLLRYGGAFTIALAYAGTGN---N  576 (963)
T ss_dssp             HHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG--GGG----HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC---H
T ss_pred             HHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh--HHH----HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC---H
Confidence            67777776653   234678888888887744430  112    22333332 67888888888888765544422   2


Q ss_pred             HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhcCcCcCC
Q 007670          120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGSGAVDGS  198 (594)
Q Consensus       120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL-~s~~fkaK~alL~aIGSiA~a~~~~~p  198 (594)
                      ..+..|+..+..+.+..|+.+|+.+|+-+.=.-+        ..++|++.+| ++.+..+|-++.-|+|-+. +|   .|
T Consensus       577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~-aG---n~  644 (963)
T 4ady_A          577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC-AG---KG  644 (963)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT-SS---SC
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-cC---CC
Confidence            2566666666667788899999999987632211        2355666644 4568888888888888533 33   13


Q ss_pred             chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchh
Q 007670          199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFD  254 (594)
Q Consensus       199 yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfD  254 (594)
                      . ..++..|..++.+.|..+|..|+-+||.|..--.+...|.+..+++.|...-.|
T Consensus       645 ~-~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d  699 (963)
T 4ady_A          645 L-QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN  699 (963)
T ss_dssp             C-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred             c-HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence            2 678888989999999999999999999997655567667777777666655444

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.56  E-value=0.0053  Score=72.19  Aligned_cols=224  Identities=13%  Similarity=0.084  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHHhhcC--CCChHHHHHhhhh--cCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcC-
Q 007670           21 TYSQAAKELDSIAATVD--PTLLPTFLSCILS--TNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD-   93 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lp--pe~lp~fLs~L~e--~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD-   93 (594)
                      -+..++..|-+.+.-+.  |+.+++.|..+.+  ...++++.+|.+|..+|..+|+.|  .+.||++.|+..+...|.= 
T Consensus       511 V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~  590 (980)
T 3ibv_A          511 VQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNIS  590 (980)
T ss_dssp             HHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCc
Confidence            45556666666666663  5559999999998  888888999999999999999999  7899999999998877651 


Q ss_pred             --C-------ChhH-----------HHHHHHHHHhhchhhhcch------hHHhHHHHHHHHc---cC-C---ChhHHH-
Q 007670           94 --K-------NSAL-----------QATCISTVSSLSPRVGASA------FVTMLKLLSDALF---TE-Q---DTNAQV-  139 (594)
Q Consensus        94 --~-------Ds~V-----------R~Ac~~ALG~LAe~l~~~~------~~~~lkPL~eaL~---~e-q---~k~vQ~-  139 (594)
                        |       ++.+           +--..+|+|.|......++      ...++.||+..|-   .. +   +..+|+ 
T Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~  670 (980)
T 3ibv_A          591 VSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVY  670 (980)
T ss_dssp             CCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH
T ss_pred             CCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHH
Confidence              1       1111           2337889999987764221      2248999988874   11 1   211233 


Q ss_pred             HHHHHHHHHHhhcCCC------cchhHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhh
Q 007670          140 GAALCLAATIDAAQDP------DAGKLGRMEVRLERLLK--SEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGF  210 (594)
Q Consensus       140 ~Aa~ALaavvE~l~~~------i~~yL~~L~~RL~klL~--s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~  210 (594)
                      ...+||.++.-+..+.      +.+.+...++-+...|+  ..+..++.++-.++.-++..-|. ..||++.++..|..-
T Consensus       671 ~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~  750 (980)
T 3ibv_A          671 CSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS  750 (980)
T ss_dssp             HHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc
Confidence            4456666666554322      34567788888877786  44667888888888877755444 579999999988865


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHH
Q 007670          211 LSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKI  247 (594)
Q Consensus       211 L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~s  247 (594)
                      ....+..   -.+..++-|....|+.+.|+...++..
T Consensus       751 ~~~~e~~---~fL~l~~qli~~f~~~~~~~l~~ll~~  784 (980)
T 3ibv_A          751 IDMNELV---DVLSFISQLIHIYKDNMMEITNRMLPT  784 (980)
T ss_dssp             CCTTTHH---HHHHHHHHHHHHTTTTSHHHHHHHHHH
T ss_pred             CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555543   256667777777776577776666644

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.42  E-value=0.0065  Score=71.32  Aligned_cols=218  Identities=13%  Similarity=0.112  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHH
Q 007670            4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITK   82 (594)
Q Consensus         4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpk   82 (594)
                      +.-+.+++.+.+=.+.+..|.|+--|-.+... .++.++.++..|..   +.+|.+|..+++++|..+.|- .. .-+++
T Consensus       507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~-~aIq~  581 (963)
T 4ady_A          507 EAIHDMFTYSQETQHGNITRGLAVGLALINYG-RQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNN-SAVKR  581 (963)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCH-HHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-ChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCH-HHHHH
Confidence            34455666554433445666655444433111 45559999999875   468899999999999876665 21 23444


Q ss_pred             HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH
Q 007670           83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR  162 (594)
Q Consensus        83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~  162 (594)
                      ||..+.   .|++.-||++++.+||-++-.-   +  ..+..+++.|....++.+-.+|+.||.-+.-+-+.      ++
T Consensus       582 LL~~~~---~d~~d~VRraAViaLGlI~~g~---~--e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~  647 (963)
T 4ady_A          582 LLHVAV---SDSNDDVRRAAVIALGFVLLRD---Y--TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QS  647 (963)
T ss_dssp             HHHHHH---HCSCHHHHHHHHHHHHHHTSSS---C--SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HH
T ss_pred             HHHHhc---cCCcHHHHHHHHHHHHhhccCC---H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HH
Confidence            554444   5788889999999999865332   1  14566777776677999999999999887643332      45


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcCC-ccc
Q 007670          163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEKD-AVP  238 (594)
Q Consensus       163 L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~s--eDw~lRKaAaDaLg~IA~a~gd-~f~  238 (594)
                      ++.-|.++++.++..++..++-++|-|..--... .|.+..++..|..+..+  +|-.+|-.|+-++|-|-.-.|- .+.
T Consensus       648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis  727 (963)
T 4ady_A          648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQ  727 (963)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEEC
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEE
Confidence            5556666677777777777666666443222233 38899999999999875  6888999999999988643332 566


Q ss_pred             hh
Q 007670          239 EF  240 (594)
Q Consensus       239 py  240 (594)
                      ||
T Consensus       728 ~~  729 (963)
T 4ady_A          728 LE  729 (963)
T ss_dssp             SB
T ss_pred             ee
Confidence            65

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.38  E-value=0.0029  Score=70.77  Aligned_cols=214  Identities=12%  Similarity=0.094  Sum_probs=139.4

Q ss_pred             ChhHHHHHHHHHHHHHhhcC------CCChHHHHHhhh-hc-------------CCCCCCcchHHHHHHHHHHHhhh---
Q 007670           18 DRDTYSQAAKELDSIAATVD------PTLLPTFLSCIL-ST-------------NSSDKPGVRKECIHVIATLSNSH---   74 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lp------pe~lp~fLs~L~-e~-------------~ss~kp~~RKaaI~lLGvlae~h---   74 (594)
                      |.+.++.|+..|-.|+.+=.      ...+|+|+..|. ++             ....++.+++.+.-+|..|+...   
T Consensus       147 ~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~  226 (584)
T 3l6x_A          147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA  226 (584)
T ss_dssp             SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred             CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHH
Confidence            44567777777777665311      123678887662 11             12335688999999999996543   


Q ss_pred             --ccccc---hHHHHHHHHhhh--cCCChhHHHHHHHHHHhhchhhhcc----------------------h--h-----
Q 007670           75 --NLSPY---ITKIINSITRNF--RDKNSALQATCISTVSSLSPRVGAS----------------------A--F-----  118 (594)
Q Consensus        75 --~isph---LpkIL~~IvrrL--kD~Ds~VR~Ac~~ALG~LAe~l~~~----------------------~--~-----  118 (594)
                        .|..+   ++.++.++...+  .+++..+.+-|+.+|..|+..+...                      +  .     
T Consensus       227 R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~  306 (584)
T 3l6x_A          227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ  306 (584)
T ss_dssp             HHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGS
T ss_pred             HHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhc
Confidence              22221   234444443332  3466677788888998888664210                      0  0     


Q ss_pred             HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---cchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC
Q 007670          119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG  193 (594)
Q Consensus       119 ~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~---i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~  193 (594)
                      ...+++|+..|....++.+|..|+.||..++-+-...   +...+  ...++.|++||.+++-.++..+..+|+-++...
T Consensus       307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence            1256788888854568999999999999998642111   11122  346889999999999999999999999988543


Q ss_pred             cCcCCchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHH
Q 007670          194 AVDGSGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAV  231 (594)
Q Consensus       194 ~~~~pyf~~lm~~L~e~L~se--------Dw~lRKaAaDaLg~IA~  231 (594)
                      ..-...-...||.|+..|.+.        .-.++..|+-+|+-|+.
T Consensus       387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a  432 (584)
T 3l6x_A          387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA  432 (584)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence            221123456889999999865        35677888888887764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.36  E-value=0.0008  Score=79.58  Aligned_cols=155  Identities=9%  Similarity=-0.012  Sum_probs=114.8

Q ss_pred             chHHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHcc----CCChhHHHHHHHHHHHH
Q 007670           79 YITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFT----EQDTNAQVGAALCLAAT  148 (594)
Q Consensus        79 hLpkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~----eq~k~vQ~~Aa~ALaav  148 (594)
                      -++.|++.+.+.+..  ++=..|+|+++|+|++++.+...   + ...+++.|+..+-+    ++...+...+|++|.++
T Consensus       448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry  527 (1023)
T 4hat_C          448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY  527 (1023)
T ss_dssp             HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence            455566666666665  45688999999999999988543   2 22366666664421    12223444778889888


Q ss_pred             HhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC-c--------CcCCchHHHHHHHHhhhcCCcHHHH
Q 007670          149 IDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-A--------VDGSGLKGLVSCLLGFLSSQDWAAR  219 (594)
Q Consensus       149 vE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~-~--------~~~pyf~~lm~~L~e~L~seDw~lR  219 (594)
                      .+-+.. -.+||+.++..|++.|..++.++..++..++..++... .        +..||++.++..+..++..-+...+
T Consensus       528 ~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~  606 (1023)
T 4hat_C          528 PRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV  606 (1023)
T ss_dssp             HHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH
T ss_pred             HHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH
Confidence            877632 24689999999999997777778888888888888542 2        2248999999999999887778888


Q ss_pred             HHHHHHHHHHHHHcC
Q 007670          220 KAAAEALWRLAVVEK  234 (594)
Q Consensus       220 KaAaDaLg~IA~a~g  234 (594)
                      -.+.|+++.|+.+.+
T Consensus       607 ~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          607 HTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            899999999999887

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.0033  Score=72.32  Aligned_cols=225  Identities=7%  Similarity=0.016  Sum_probs=130.7

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcc-hHH-HHHHHHHHHh-hh-ccccch
Q 007670            6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGV-RKE-CIHVIATLSN-SH-NLSPYI   80 (594)
Q Consensus         6 k~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~-RKa-aI~lLGvlae-~h-~isphL   80 (594)
                      -++++..|..-.|.+-+.-|+..|-.+....+... ...=|..|..|.....|.. .+. .+.-=.-+.+ .+ .+..+ 
T Consensus       378 L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-  456 (778)
T 3opb_A          378 TEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-  456 (778)
T ss_dssp             HHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-
Confidence            44556666543566666667777777777654321 1112333333322111100 000 0110011112 12 33222 


Q ss_pred             HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hHH--hHHHHHHHHccCCCh--hHHHHHHHHHHHHHhhcCCC
Q 007670           81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FVT--MLKLLSDALFTEQDT--NAQVGAALCLAATIDAAQDP  155 (594)
Q Consensus        81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~~--~lkPL~eaL~~eq~k--~vQ~~Aa~ALaavvE~l~~~  155 (594)
                       ..+|.++..++.+++.+|..++++|+.|+..-.... +..  .++||+..|......  .++..|+.||+++.-..++.
T Consensus       457 -GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~  535 (778)
T 3opb_A          457 -ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG  535 (778)
T ss_dssp             -THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred             -cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence             478888899999999999999999999997632111 222  899999999643322  27889999999998655432


Q ss_pred             cc--hh-HHHHHHHHHHHhcC-Cch-------------hhHHHHHHHHHHHHhcCc---C-c-CCchH--HHHHHHHhhh
Q 007670          156 DA--GK-LGRMEVRLERLLKS-EVF-------------KAKAAGLVVVGSVIGSGA---V-D-GSGLK--GLVSCLLGFL  211 (594)
Q Consensus       156 i~--~y-L~~L~~RL~klL~s-~~f-------------kaK~alL~aIGSiA~a~~---~-~-~pyf~--~lm~~L~e~L  211 (594)
                      ..  .| ....++.|+.+|.. +..             ..+--++-|++-+|....   + . .-.+.  ..++.|.++|
T Consensus       536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL  615 (778)
T 3opb_A          536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM  615 (778)
T ss_dssp             HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred             HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence            21  11 12578889999973 221             114445557777776541   1 1 12233  4789999999


Q ss_pred             cCCcHHHHHHHHHHHHHHHHH
Q 007670          212 SSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       212 ~seDw~lRKaAaDaLg~IA~a  232 (594)
                      .++...+|++|+++|.-|+..
T Consensus       616 ~s~n~~VrrAA~elI~NL~~~  636 (778)
T 3opb_A          616 LDENVPLQRSTLELISNMMSH  636 (778)
T ss_dssp             GCSSHHHHHHHHHHHHHHHTS
T ss_pred             hCCCHHHHHHHHHHHHHHhCC
Confidence            999999999999999999973

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.17  E-value=0.0043  Score=69.37  Aligned_cols=165  Identities=12%  Similarity=0.013  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHhhcC------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchHHHHHHHHh
Q 007670           21 TYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYITKIINSITR   89 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lp------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLpkIL~~Ivr   89 (594)
                      ..|-++..||.+-+.=|      ...||.|+.+|.    +.++..+.+|...|..+|.+.     .|.  -.-.||.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~----s~~~~~q~~Aa~~L~~La~~~~~~k~~V~--~~G~Ip~LV~   97 (584)
T 3l6x_A           24 HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLG----FRLDAVKSNAAAYLQHLCYRNDKVKTDVR--KLKGIPVLVG   97 (584)
T ss_dssp             ----------------CCCCCCCCCCHHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHH
T ss_pred             cccchHHHHHHHHhcCCCCCCcccccHHHHHHHHC----CCCHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCcHHHHH
Confidence            56678889999877522      223888888885    456788888999999998654     221  1246799999


Q ss_pred             hhcCCChhHHHHHHHHHHhhchhh-hcc--hhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHH
Q 007670           90 NFRDKNSALQATCISTVSSLSPRV-GAS--AFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRM  163 (594)
Q Consensus        90 rLkD~Ds~VR~Ac~~ALG~LAe~l-~~~--~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L  163 (594)
                      .|+.++..|+..++.||+.|+..- .+.  ....  .++||+..|....+..+|..|+.||..+.-+  +.. ..++..-
T Consensus        98 LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~~I~~~a  175 (584)
T 3l6x_A           98 LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKMEIVDHA  175 (584)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhHHHHhcc
Confidence            999999999999999999999742 111  1111  8999999995456788899999999888652  222 1222233


Q ss_pred             HHHHHHHh------------------cCCchhhHHHHHHHHHHHHhcC
Q 007670          164 EVRLERLL------------------KSEVFKAKAAGLVVVGSVIGSG  193 (594)
Q Consensus       164 ~~RL~klL------------------~s~~fkaK~alL~aIGSiA~a~  193 (594)
                      ++-|+++|                  ..+...++.-+.++|..++...
T Consensus       176 lp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~  223 (584)
T 3l6x_A          176 LHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSER  223 (584)
T ss_dssp             HHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCC
Confidence            44455544                  1223456666777777766543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.16  E-value=0.015  Score=58.60  Aligned_cols=197  Identities=13%  Similarity=0.098  Sum_probs=140.9

Q ss_pred             CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh
Q 007670           38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG  114 (594)
Q Consensus        38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~  114 (594)
                      .+.+..++..+.    ..++-+|-.++.+|+-+-...   .-...+.++++.|++.+++.|-.|-==|..+++.|-+...
T Consensus        32 e~~l~~L~~LL~----dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp  107 (265)
T 3b2a_A           32 KRALFLILELAG----EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP  107 (265)
T ss_dssp             HHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHh----ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence            334666666664    467789999999999986663   5556899999999999999998775556666776666552


Q ss_pred             --cchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          115 --ASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       115 --~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                        ++.+.-+..-|.+.+ ..++...+.=|+-.|..+      .+....++++..++.++++.+.++|.+.+.++-.+++-
T Consensus       108 L~~~~y~Kl~~aL~dli-k~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          108 MGSKTFLKAAKTLVSLL-ESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             BCHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence              111222444444444 467777776666555555      34445788999999999999999999999999988865


Q ss_pred             CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH-cCCccchhhhHHHH
Q 007670          193 GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV-EKDAVPEFKGKCLK  246 (594)
Q Consensus       193 ~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a-~gd~f~py~~~~m~  246 (594)
                      .++ ...+..++.-+.++|.++|-.+++-|+++|-.|+.. ..+.+.+-...+++
T Consensus       181 S~D-~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~  234 (265)
T 3b2a_A          181 SAD-SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR  234 (265)
T ss_dssp             CSS-CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred             cCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH
Confidence            543 245667778899999999999999999999998875 33444433333433

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=97.15  E-value=0.0015  Score=77.21  Aligned_cols=165  Identities=13%  Similarity=0.084  Sum_probs=115.4

Q ss_pred             CCh-hHHHH-HHHHHHHHHhhc-CCCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccc-cchHHHHHHHHh
Q 007670           17 SDR-DTYSQ-AAKELDSIAATV-DPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLS-PYITKIINSITR   89 (594)
Q Consensus        17 sDr-DT~r~-A~~eLD~LA~~L-ppe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~is-phLpkIL~~Ivr   89 (594)
                      .|+ |=.+. |...|..|+... +++.++.++..|.+... ++.| +|...+..+-++.--|  .+. ..-.+|+.+|++
T Consensus       772 ~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~  850 (997)
T 1vsy_5          772 KDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVS  850 (997)
T ss_dssp             SHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTT
T ss_pred             CcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            444 34555 666788887665 44459999999988776 6788 9999888888876666  333 345689999999


Q ss_pred             hhcCCC-hhHHHHHHHHHHhhchhh-hcchhHHhHHHHHHHHc---cC---C-------Ch--hHHHHHHHHHHHHHhhc
Q 007670           90 NFRDKN-SALQATCISTVSSLSPRV-GASAFVTMLKLLSDALF---TE---Q-------DT--NAQVGAALCLAATIDAA  152 (594)
Q Consensus        90 rLkD~D-s~VR~Ac~~ALG~LAe~l-~~~~~~~~lkPL~eaL~---~e---q-------~k--~vQ~~Aa~ALaavvE~l  152 (594)
                      .|.|+. .-||++|+.||+-|-... ...    .+..++..+.   ..   .       .+  ...-||.++|.++|.+.
T Consensus       851 ~L~D~q~~EVRe~Aa~tLsgll~c~~~~~----~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~  926 (997)
T 1vsy_5          851 NLYNEQFVEVRVRAASILSDIVHNWKEEQ----PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF  926 (997)
T ss_dssp             TTTCSSCHHHHHHHHHHHHHHHHSCCSHH----HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCccHHHHHHHHHHHHHHHHcCCchh----hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC
Confidence            999999 999999999999886443 111    1123333332   11   0       00  12239999999999999


Q ss_pred             CCCc--chhHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 007670          153 QDPD--AGKLGRMEVRLERLLKSEVFKAKAAGLVVVG  187 (594)
Q Consensus       153 ~~~i--~~yL~~L~~RL~klL~s~~fkaK~alL~aIG  187 (594)
                      ++..  .+++|.++..|....+.+.. ++.++=.+++
T Consensus       927 Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tls  962 (997)
T 1vsy_5          927 PYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTIS  962 (997)
T ss_dssp             SCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHH
T ss_pred             CCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHH
Confidence            9886  67999999999888877643 4444444444

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.12  E-value=0.00059  Score=76.82  Aligned_cols=149  Identities=11%  Similarity=0.127  Sum_probs=89.9

Q ss_pred             HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-
Q 007670           82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-  157 (594)
Q Consensus        82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-  157 (594)
                      +|+|.|. .|+.+|+.+|..+|.||+.|++.-......   ..+.|++..++.+.+..|+..|+.||..+....++.+. 
T Consensus        35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            4566554 488899999999999999888643111111   16778887777788888888999888888765444332 


Q ss_pred             --------hhHHHHHHHHHHHhcCC--c------------hhhHHHHHHHHHHHHhcCcCcCCc--hHHHHHHHHhhhcC
Q 007670          158 --------GKLGRMEVRLERLLKSE--V------------FKAKAAGLVVVGSVIGSGAVDGSG--LKGLVSCLLGFLSS  213 (594)
Q Consensus       158 --------~yL~~L~~RL~klL~s~--~------------fkaK~alL~aIGSiA~a~~~~~py--f~~lm~~L~e~L~s  213 (594)
                              ++|..++.++...+...  .            +..-..++.++.+++........+  -...++.|..+|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence                    23333333333333211  0            011123566777766443332111  12456666666643


Q ss_pred             ---CcHHHHHHHHHHHHHHHH
Q 007670          214 ---QDWAARKAAAEALWRLAV  231 (594)
Q Consensus       214 ---eDw~lRKaAaDaLg~IA~  231 (594)
                         ....++.+|+++|+.+..
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~  214 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSE  214 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHHHHHHHHhc
Confidence               247899999999999876

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.11  E-value=0.013  Score=61.65  Aligned_cols=243  Identities=12%  Similarity=0.105  Sum_probs=141.6

Q ss_pred             HHHHHHHhhcCCCh--hHHHHHHHHHHHHHhhcCCCCh-----HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc
Q 007670            6 KTSVNGLLNKLSDR--DTYSQAAKELDSIAATVDPTLL-----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP   78 (594)
Q Consensus         6 k~rvl~~L~KLsDr--DT~r~A~~eLD~LA~~Lppe~l-----p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp   78 (594)
                      |..++|-...+.+.  |+.++--..-..|...+-.+.|     ..++.-+....++++...||=+++.+-.++...   .
T Consensus        24 k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~  100 (355)
T 3tjz_B           24 KSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA---E  100 (355)
T ss_dssp             HHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS---S
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH---H
Confidence            44567766666654  5666543333333333333443     344444455677889999999999998887763   1


Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG  158 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~  158 (594)
                      -+=-..+++.+-++||++.||..|..+|+.+.+.-.   ...+.+++-.+| .+.++.|-..|+.|..+++...++    
T Consensus       101 e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m---~~~l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe----  172 (355)
T 3tjz_B          101 DVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM---LQAIERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD----  172 (355)
T ss_dssp             CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT---HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH----
T ss_pred             HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH---HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH----
Confidence            111457889999999999999999999999975431   112666666666 789999999999999999876543    


Q ss_pred             hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccc
Q 007670          159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP  238 (594)
Q Consensus       159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~  238 (594)
                      .+...++.+..++...+..+...++.++--+....   ...+..+++.+.+.-..+.|..    +..|-.++....+...
T Consensus       173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---~~a~~kLv~~l~~~~l~~~~~q----~~llr~l~~~~~~d~~  245 (355)
T 3tjz_B          173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---RLAVSKMISKFTRHGLKSPFAY----CMMIRVASRQLEDEDG  245 (355)
T ss_dssp             HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSCCSCHHHH----HHHHHHHTCC------
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---hHHHHHHHHHHhcCCCcChHHH----HHHHHHHHHhccccch
Confidence            44557778888998888777655555555544322   1133444555544322246763    4433333222211111


Q ss_pred             hhhhHHHHHHHhcchhH----HHHHHhhcCCC
Q 007670          239 EFKGKCLKIFESKRFDK----MIEAWKQVPDL  266 (594)
Q Consensus       239 py~~~~m~sLEs~RfDK----~i~lWk~i~~v  266 (594)
                      .....++..++.+==-+    .|+.-|.|-..
T Consensus       246 ~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l  277 (355)
T 3tjz_B          246 SRDSPLFDFIESCLRNKHEMVVYEAASAIVNL  277 (355)
T ss_dssp             -----------CCCCCSSHHHHHHHHHHHTC-
T ss_pred             hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence            12334444444332112    66666666554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.06  E-value=0.0043  Score=69.23  Aligned_cols=168  Identities=10%  Similarity=0.010  Sum_probs=101.5

Q ss_pred             HHHHHhhcCCCh--h-----HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670            8 SVNGLLNKLSDR--D-----TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI   80 (594)
Q Consensus         8 rvl~~L~KLsDr--D-----T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL   80 (594)
                      =++-+|.|++|=  |     -+-.|+|.|-.+ .+||++ +..+...+ .....+.|.+|-.+++.|-.+ .. ++.. |
T Consensus       224 LCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL-~D-LL~~-L  297 (800)
T 3oc3_A          224 YEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL-KE-FVED-K  297 (800)
T ss_dssp             HHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT-GG-GCCC-H
T ss_pred             HHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH-HH-HHHH-H
Confidence            345667787652  1     345667777777 899988 55444444 445677899999999999999 22 3322 9


Q ss_pred             HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHH-HHHHHHHHhhcCCCcchh
Q 007670           81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGA-ALCLAATIDAAQDPDAGK  159 (594)
Q Consensus        81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~A-a~ALaavvE~l~~~i~~y  159 (594)
                      +.+++.++.+|+|+|--||.+|+.+|--++  . .+....++.-|.+.|.+..|-.+-.++ ..-|++++..-..  ...
T Consensus       298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~-p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~  372 (800)
T 3oc3_A          298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFP--I-TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSI  372 (800)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--C-SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCC
T ss_pred             HHHHHHHHhhcCCcccHHHHHHHHHhhhhc--c-hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--ccc
Confidence            999999999999999999999999999888  1 011223666666666322221111111 1123333332111  011


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHH
Q 007670          160 LGRMEVRLERLLKSEVFKAKAAGLVVV  186 (594)
Q Consensus       160 L~~L~~RL~klL~s~~fkaK~alL~aI  186 (594)
                      .+.|+|||.-.|.|.-.-+|.+++.++
T Consensus       373 dp~LVPRL~PFLRHtITSVR~AVL~TL  399 (800)
T 3oc3_A          373 PPERLKDIFPCFTSPVPEVRTSILNMV  399 (800)
T ss_dssp             CSGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred             ChHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence            125555555555555555555555444

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.0062  Score=70.13  Aligned_cols=170  Identities=12%  Similarity=0.153  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHhhcC---------C-CChHHHHHhhhhcCCCC-------C--C-cchHHHHHHHHHHHhhh-----c
Q 007670           21 TYSQAAKELDSIAATVD---------P-TLLPTFLSCILSTNSSD-------K--P-GVRKECIHVIATLSNSH-----N   75 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lp---------p-e~lp~fLs~L~e~~ss~-------k--p-~~RKaaI~lLGvlae~h-----~   75 (594)
                      ....|++.|-.|+-+-+         + +.+++|+..|......+       +  + ..+.+|+++|+.||...     -
T Consensus       517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~  596 (778)
T 3opb_A          517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE  596 (778)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence            46688888888875432         1 22799999987311111       1  1 23889999999998763     1


Q ss_pred             ccc-ch--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc--chh------HH--hHHHHHHHHccCCChhHHHHHH
Q 007670           76 LSP-YI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--SAF------VT--MLKLLSDALFTEQDTNAQVGAA  142 (594)
Q Consensus        76 isp-hL--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~--~~~------~~--~lkPL~eaL~~eq~k~vQ~~Aa  142 (594)
                      +.. -+  ...|+.|...|.+.+..||+||++++..|+..-.-  +-+      ..  -+++|+..+ +..+..+|.+|+
T Consensus       597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAa  675 (778)
T 3opb_A          597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVA  675 (778)
T ss_dssp             HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHH
Confidence            111 22  24799999999999999999999999999964421  011      11  377777777 778999999999


Q ss_pred             HHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC--CchhhHHHHHHHHHHHHh
Q 007670          143 LCLAATIDAAQDPDAGKL--GRMEVRLERLLKS--EVFKAKAAGLVVVGSVIG  191 (594)
Q Consensus       143 ~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s--~~fkaK~alL~aIGSiA~  191 (594)
                      .||+.+...-+......+  ...++.++.+|..  ++-.++.-++.++..++.
T Consensus       676 gALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          676 AIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            999998543211111111  3466677777766  566666667777887774

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.84  E-value=0.0055  Score=60.84  Aligned_cols=147  Identities=9%  Similarity=0.022  Sum_probs=101.8

Q ss_pred             HHHHHhhhcCCCh--hHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670           84 INSITRNFRDKNS--ALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA  157 (594)
Q Consensus        84 L~~IvrrLkD~Ds--~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~  157 (594)
                      +|.+++.|+.+|+  .|+..++.++..|+..-.+.  ...  -.++||+..| ...++.+|..|+.||..+.-.-+ ...
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~-~nk   87 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDN-DNK   87 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCH-HHH
Confidence            6788899998887  88877888998888654221  111  1678888888 56789999999999999865211 111


Q ss_pred             hhHHH--HHHHHHHHhc-CCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc----------------CCcHHH
Q 007670          158 GKLGR--MEVRLERLLK-SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS----------------SQDWAA  218 (594)
Q Consensus       158 ~yL~~--L~~RL~klL~-s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~----------------seDw~l  218 (594)
                      ..+..  -+|.|+++|. +++..++..+.+++..++.....-.......|+.|.+.|.                ..|-.+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence            22222  6778899997 5788899999999998875432211223345666666442                125578


Q ss_pred             HHHHHHHHHHHHHH
Q 007670          219 RKAAAEALWRLAVV  232 (594)
Q Consensus       219 RKaAaDaLg~IA~a  232 (594)
                      +..|+.+|..|+..
T Consensus       168 ~~na~~~L~nLss~  181 (233)
T 3tt9_A          168 FYNVTGCLRNMSSA  181 (233)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcC
Confidence            88899999998763

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=96.81  E-value=0.04  Score=66.02  Aligned_cols=242  Identities=15%  Similarity=0.182  Sum_probs=150.0

Q ss_pred             hHHHHHHHHHhhcCC------ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--
Q 007670            3 HALKTSVNGLLNKLS------DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--   74 (594)
Q Consensus         3 ~~Lk~rvl~~L~KLs------DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--   74 (594)
                      +.+|+.++..+....      +.--.....+.|-.|+..-=|+.-|-|+..|.+...+ .+..+..++..|..+++..  
T Consensus        88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            468889999887762      2223344455666677764345666666666655443 4567888999999998873  


Q ss_pred             --------------ccccchHHHHHHHHhhhcC-------------------CChhHHHHHHHHHHhhchhhhcchh-H-
Q 007670           75 --------------NLSPYITKIINSITRNFRD-------------------KNSALQATCISTVSSLSPRVGASAF-V-  119 (594)
Q Consensus        75 --------------~isphLpkIL~~IvrrLkD-------------------~Ds~VR~Ac~~ALG~LAe~l~~~~~-~-  119 (594)
                                    .+..+++.|++.+...|++                   ++..++.+++.++..+..|+.-.-. . 
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~  246 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE  246 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc
Confidence                          2455677888888887765                   2345888999999988888731111 0 


Q ss_pred             --HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-----cchhH-HHHHHHHHHHhc-------CC-chh--hHHH
Q 007670          120 --TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-----DAGKL-GRMEVRLERLLK-------SE-VFK--AKAA  181 (594)
Q Consensus       120 --~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-----i~~yL-~~L~~RL~klL~-------s~-~fk--aK~a  181 (594)
                        .++.-++ .++  +++.++..|+-||..++..-..+     ....| ...+.+++..+.       .. ++.  -|-+
T Consensus       247 ~~~ll~~l~-~~l--~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~  323 (1204)
T 3a6p_A          247 NCKLLEILC-LLL--NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC  323 (1204)
T ss_dssp             TSHHHHHHH-HGG--GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred             cchHHHHHH-HHc--CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence              1333333 333  36778899999999999743211     12222 222445555542       11 121  1111


Q ss_pred             -HHHHHHHHHhc--Cc----CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C-CccchhhhHHHHHH
Q 007670          182 -GLVVVGSVIGS--GA----VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K-DAVPEFKGKCLKIF  248 (594)
Q Consensus       182 -lL~aIGSiA~a--~~----~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~---g-d~f~py~~~~m~sL  248 (594)
                       ++..+|.-...  ++    ...+.+..+++.|..|...++-.+-..+++....+....   . +.+.||...++.++
T Consensus       324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl  401 (1204)
T 3a6p_A          324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS  401 (1204)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence             44444431111  11    134788899999999999888888888888888777642   1 45677777777654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.71  E-value=0.038  Score=54.78  Aligned_cols=147  Identities=12%  Similarity=-0.000  Sum_probs=96.2

Q ss_pred             hHHHHHhhhhcCCCCCC--cchHHHHHHHHHHHhhh-ccccch--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc
Q 007670           41 LPTFLSCILSTNSSDKP--GVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA  115 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp--~~RKaaI~lLGvlae~h-~isphL--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~  115 (594)
                      +|+++..|.    ++++  .++..+...|..+|... -....+  .-.+|.+++.|+.++..|+..+++||+.|+..-.+
T Consensus        10 i~~lV~lL~----s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A           10 LERAVSMLE----ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             HHHHHHTCC----SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhC----CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence            888887775    3444  67888888999988665 111111  23579999999999999999999999999975332


Q ss_pred             ch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHHHHhc----------------CC
Q 007670          116 SA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLK----------------SE  174 (594)
Q Consensus       116 ~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL~~L~~RL~klL~----------------s~  174 (594)
                      .- .+   -.++||+..|....+..+|..|+.+|-.+--  .+... .+...-++.|..++.                ..
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~--~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS--NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--SGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--ChhhHHHHHhccHHHHHHHHhccccCCcccccccccccc
Confidence            21 11   1899999999534678899988888877742  22221 122222344444331                12


Q ss_pred             chhhHHHHHHHHHHHHhcC
Q 007670          175 VFKAKAAGLVVVGSVIGSG  193 (594)
Q Consensus       175 ~fkaK~alL~aIGSiA~a~  193 (594)
                      ...++.-+.+++..++.+.
T Consensus       164 ~~~v~~na~~~L~nLss~~  182 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAG  182 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHHHHhcCC
Confidence            3456666777888777654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.66  E-value=0.0067  Score=67.69  Aligned_cols=172  Identities=12%  Similarity=0.070  Sum_probs=123.2

Q ss_pred             HHhhhhcCCCC-CCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHH
Q 007670           45 LSCILSTNSSD-KPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLK  123 (594)
Q Consensus        45 Ls~L~e~~ss~-kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lk  123 (594)
                      |+.+.||.++. =+|+|..|--+||.+  .|.-.+  -+++-.+++.+..+.=.||+...-+|--+.+.+.+  +..+++
T Consensus       229 LDRFGDYVSDqVVAPVRETaAQtLGaL--~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~  302 (800)
T 3oc3_A          229 TDKFNDFVDDRTVAPVRDAAAYLLSRI--YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCR  302 (800)
T ss_dssp             HBCCBBCSSSSCBCHHHHHHHHHHHHH--TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHH
T ss_pred             hccccccccCeeeeehHHHHHHHHHHH--HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHH
Confidence            34446765543 379999999999998  663333  35566666777777778999999999988555432  445777


Q ss_pred             HHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-c-hhhHHHHHHHHHHHHhcCcCcCCchH
Q 007670          124 LLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-V-FKAKAAGLVVVGSVIGSGAVDGSGLK  201 (594)
Q Consensus       124 PL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-~-fkaK~alL~aIGSiA~a~~~~~pyf~  201 (594)
                      .++..| .+.+-.|+..||.+|--++      ..+.++.|+..+-.+|.+- + -.....++.+++.+..-...... .+
T Consensus       303 aVL~GL-~D~DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~-dp  374 (800)
T 3oc3_A          303 KLVSLL-SSPDEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI-PP  374 (800)
T ss_dssp             HHHHHT-TCSSHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC-CS
T ss_pred             HHHhhc-CCcccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc-Ch
Confidence            777777 7888999998888887666      2356777888777777542 2 22355677777776654433221 12


Q ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670          202 GLVSCLLGFLSSQDWAARKAAAEALWRLA  230 (594)
Q Consensus       202 ~lm~~L~e~L~seDw~lRKaAaDaLg~IA  230 (594)
                      .++|.|-+||...--.+|++++.+|.++.
T Consensus       375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             GGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            88999999999999999999999997765

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.64  E-value=0.36  Score=51.41  Aligned_cols=251  Identities=17%  Similarity=0.170  Sum_probs=161.0

Q ss_pred             HHHHHHHhhcC---CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH
Q 007670            6 KTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK   82 (594)
Q Consensus         6 k~rvl~~L~KL---sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk   82 (594)
                      +-||+..||.-   +| +..=.-+..+..|+.+-+|+-++-||..|.++...+...+||-++--|+..|..+  ..++++
T Consensus        24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~~~  100 (386)
T 3o2t_A           24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELLLK  100 (386)
T ss_dssp             HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred             HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            45666666654   44 4454556777777777788779999999999888888899999988877766544  345899


Q ss_pred             HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc----chh------H-----HhHHHHHHHHccCCChhHHHHHHHHHHH
Q 007670           83 IINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAF------V-----TMLKLLSDALFTEQDTNAQVGAALCLAA  147 (594)
Q Consensus        83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~----~~~------~-----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaa  147 (594)
                      +++.+...|+|.|+.|-+.+..+.+.+-..+.+    .+.      .     .-+|--+-.++...+.++...+.=-+..
T Consensus       101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~  180 (386)
T 3o2t_A          101 LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG  180 (386)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence            999999999999998887777777776543332    111      1     1344444444455577777777777777


Q ss_pred             HHhhc--C--CC---------c--------chhH---------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC
Q 007670          148 TIDAA--Q--DP---------D--------AGKL---------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG  197 (594)
Q Consensus       148 vvE~l--~--~~---------i--------~~yL---------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~  197 (594)
                      +|..-  +  +.         +        .++|         ..|+.+|++.|.++.... ..+..+|++++...+.-+
T Consensus       181 VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss-~~l~a~lnsLa~Iak~RP  259 (386)
T 3o2t_A          181 LIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISS-INLTTALGSLANIARQRP  259 (386)
T ss_dssp             HHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCH-HHHHHHHHHHHHHHHHSG
T ss_pred             HHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHHHHhcH
Confidence            77431  0  10         0        1122         458889999998764333 455667777776666666


Q ss_pred             CchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-HHHHHhhcC
Q 007670          198 SGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-MIEAWKQVP  264 (594)
Q Consensus       198 pyf~~lm~~L~e~L~se--------Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-~i~lWk~i~  264 (594)
                      .|...++++|..+-.+-        --.+||..=-.|..+...  ..-.||...+-..|+.  +.. ..++.+.+|
T Consensus       260 ~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~--p~s~~~~~~I~~~L~~--Lg~s~~Ei~~~~~  331 (386)
T 3o2t_A          260 MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKH--PASLEFQAQITTLLVD--LGTPQAEIARNMP  331 (386)
T ss_dssp             GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTS--GGGGGGHHHHHHHHHH--TTCCHHHHHHTCC
T ss_pred             HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHH--HcccHHHHHHhcc
Confidence            78888899888764321        123444444444444332  3445888888888875  222 344445555

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.18  Score=49.49  Aligned_cols=213  Identities=17%  Similarity=0.173  Sum_probs=147.2

Q ss_pred             HHHHHhhcCCChh---HHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-CCCCCCcchHHHHHHHHHHHhhhccccc-hHH
Q 007670            8 SVNGLLNKLSDRD---TYSQAAKELDSIAATVDPTLLPTFLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPY-ITK   82 (594)
Q Consensus         8 rvl~~L~KLsDrD---T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~-~ss~kp~~RKaaI~lLGvlae~h~isph-Lpk   82 (594)
                      .++..|-++=|+|   -++-|+..|-.++...|. -+-+++.-|.-- ..+.--+.-.+--++||+++...   |. +.+
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~v~~  107 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PELVKS  107 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HHHHHh
Confidence            3444455555667   577788888888887653 344444444322 23444566678889999999876   22 467


Q ss_pred             HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH
Q 007670           83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR  162 (594)
Q Consensus        83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~  162 (594)
                      ++|.|..-++=.|+.+|=--..+|+.++..... -...+++-++..| ..+|. ....++   -.|++++++.-..|...
T Consensus       108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~-l~~~v~rdi~sml-tskd~-~Dkl~a---LnFi~alGen~~~yv~P  181 (253)
T 2db0_A          108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPM-LMASIVRDFMSML-SSKNR-EDKLTA---LNFIEAMGENSFKYVNP  181 (253)
T ss_dssp             HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHT-SCSSH-HHHHHH---HHHHHTCCTTTHHHHGG
T ss_pred             hHHHHHHHHhcCCccceecHHHHHHHHHHhChH-HHHHHHHHHHHHh-cCCCh-HHHHHH---HHHHHHHhccCccccCc
Confidence            788888888888999988888888888876621 0122555555555 44442 222333   36888888888889999


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670          163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK  234 (594)
Q Consensus       163 L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g  234 (594)
                      -+|||+.||...+--+++.++.+++-+|...    |-+..++-...+-+.+..--+.+..-++|+.|+...+
T Consensus       182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~n----pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~e~  249 (253)
T 2db0_A          182 FLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEG  249 (253)
T ss_dssp             GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC--
T ss_pred             chHHHHHHHcCcchhhhHHHHHHHHHHHHcC----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999888655    3366655555555566666777889999999987654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.17  E-value=0.044  Score=55.61  Aligned_cols=137  Identities=13%  Similarity=0.178  Sum_probs=101.3

Q ss_pred             CCCCcchHHHHHHHHHH----Hhh-hccccc-hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHH
Q 007670           54 SDKPGVRKECIHVIATL----SNS-HNLSPY-ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSD  127 (594)
Q Consensus        54 s~kp~~RKaaI~lLGvl----ae~-h~isph-LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~e  127 (594)
                      +.++.+=..++-.|..+    .+. +.+.+| ...++|+++.+|-|+-..||+++...+-.+..-+   |...++..+++
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l~~  174 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPMLLD  174 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHHHH
Confidence            34555555666665554    332 256666 5899999999999999999999999998887655   22237777888


Q ss_pred             HHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670          128 ALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       128 aL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~  195 (594)
                      ++ ..++.-+-.+.+.+|..+++.-+-....++. |-+-+.++|+.++-.+|.+++.++..+-...|+
T Consensus       175 g~-ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~-~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd  240 (266)
T 2of3_A          175 AL-KSKNARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD  240 (266)
T ss_dssp             GG-GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC-HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HH-ccCCHHHHHHHHHHHHHHHHhcCCCcccccc-chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence            88 5567777788999999999987655333331 117788999999999999999999987744333

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.04  E-value=0.092  Score=52.66  Aligned_cols=149  Identities=9%  Similarity=-0.025  Sum_probs=110.4

Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHH-HccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA-LFTEQDTNAQVGAALCLAATIDAAQDPDA  157 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~ea-L~~eq~k~vQ~~Aa~ALaavvE~l~~~i~  157 (594)
                      .++.+++...+..+|+.=.||-++++.||++ ...      .-+.|++.. +.++.+=.|+.-++.++..++...+++  
T Consensus        68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            4889999999999998889999999999998 322      223444444 546677789999999999999754433  


Q ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCcc
Q 007670          158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV  237 (594)
Q Consensus       158 ~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f  237 (594)
                          .+++.+.+.++++++.++.+++..+.--+. -..+....+.+++.|.....++++-+||+.+.+|--++-..++.+
T Consensus       139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V  213 (240)
T 3l9t_A          139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTN-RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV  213 (240)
T ss_dssp             ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGG-STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhc-cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence                155677889999999999887765432111 112335556788999998889999999999999999987665555


Q ss_pred             chhh
Q 007670          238 PEFK  241 (594)
Q Consensus       238 ~py~  241 (594)
                      ..|.
T Consensus       214 ~~~~  217 (240)
T 3l9t_A          214 KIEL  217 (240)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.01  E-value=0.022  Score=67.81  Aligned_cols=192  Identities=14%  Similarity=0.071  Sum_probs=121.7

Q ss_pred             cccchHHHHHHHHhhhcCCC---------------------h-hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC-
Q 007670           76 LSPYITKIINSITRNFRDKN---------------------S-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE-  132 (594)
Q Consensus        76 isphLpkIL~~IvrrLkD~D---------------------s-~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e-  132 (594)
                      ..|++.++..++++++.=|+                     . .+++.-.+++.-++.-..+..+..++..|-..+.++ 
T Consensus       411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~  490 (1073)
T 3gjx_A          411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTE  490 (1073)
T ss_dssp             THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence            45678888888888887553                     1 234455555554442221122223444444444332 


Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHhcCc----CcCCchHHHHHH
Q 007670          133 QDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKA-KAAGLVVVGSVIGSGA----VDGSGLKGLVSC  206 (594)
Q Consensus       133 q~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fka-K~alL~aIGSiA~a~~----~~~pyf~~lm~~  206 (594)
                      .+-..-.++|.||.++..++.++. .++|+.+++-|+.+.+++.-+- |+.+.+.|--+.+-=.    ....||+.+|..
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~  570 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNK  570 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHH
Confidence            245556699999999986666433 4789999999999997764322 3333332222222111    224789999999


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHHHHHHcCCcc--------chhhhHHHHHHHhc--chhH--HHHHHhhcCCCC
Q 007670          207 LLGFLSSQDWAARKAAAEALWRLAVVEKDAV--------PEFKGKCLKIFESK--RFDK--MIEAWKQVPDLS  267 (594)
Q Consensus       207 L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f--------~py~~~~m~sLEs~--RfDK--~i~lWk~i~~v~  267 (594)
                      |.+++.+.+-.++-+||+|+..|+..-+..|        .||..++++.+...  +++.  .++++..+.-+-
T Consensus       571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi  643 (1073)
T 3gjx_A          571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI  643 (1073)
T ss_dssp             HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9999998888888999999999999766544        57988888766655  3333  555555555443

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.01  E-value=0.074  Score=53.63  Aligned_cols=145  Identities=16%  Similarity=0.101  Sum_probs=109.5

Q ss_pred             hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc
Q 007670          121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG  199 (594)
Q Consensus       121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py  199 (594)
                      .+.-|++-| ++.|..++..|..+|..++..+++.. ...+.++++++++++++++=++.--++-|++.+..-..-....
T Consensus        34 ~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            444455555 89999999999999999999987765 5679999999999999999888777888899887444333466


Q ss_pred             hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-----HHHHHhhcCCCCCCC
Q 007670          200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-----MIEAWKQVPDLSEEA  270 (594)
Q Consensus       200 f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-----~i~lWk~i~~v~~~~  270 (594)
                      |..++..|.+.+.+.+-.+|-.|+|.||.+ ..  -.+.+-.-..+.+|= --.|.     +|-+..+|+...+|.
T Consensus       113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv--~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP--LEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB--SCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc--ccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCH
Confidence            789999999999999999999999999999 11  122233333343222 22333     999999999776544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=95.93  E-value=0.022  Score=64.11  Aligned_cols=187  Identities=12%  Similarity=0.072  Sum_probs=106.2

Q ss_pred             CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch--HHHH-HHHHhhhcCCChhHHHHHHHHHHhhchhhh-
Q 007670           39 TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKII-NSITRNFRDKNSALQATCISTVSSLSPRVG-  114 (594)
Q Consensus        39 e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL--pkIL-~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~-  114 (594)
                      +++.|+|..|    +++++..|..|..+|+.+++.......+  .+++ +.|.+.|.|++..||.+|+.||+.|+..-. 
T Consensus        34 ~~i~Pll~~L----~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           34 DKILPVLKDL----KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HTTHHHHHHH----SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhHHHHHHHc----CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            3577788765    4688999999999999998765111221  2344 456677999999999999999999986642 


Q ss_pred             cchhH----HhHHHHHHHHcc-------------CCChh-------HHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHH
Q 007670          115 ASAFV----TMLKLLSDALFT-------------EQDTN-------AQVGAALCLAATIDAAQDPDAGKL--GRMEVRLE  168 (594)
Q Consensus       115 ~~~~~----~~lkPL~eaL~~-------------eq~k~-------vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~  168 (594)
                      +-+..    .++.||...|-.             ...+.       +...++.+|-.++|+..+.. .++  ...+++|+
T Consensus       110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~-~~v~~~~~l~~l~  188 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH-EAVATKQTILRLL  188 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHTCHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHhcccHHHHH
Confidence            11111    166777666520             01111       22245667777777654322 111  12445555


Q ss_pred             HHhcC-C--chhhHHHHHHHHHHHHhcCcCc-----CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          169 RLLKS-E--VFKAKAAGLVVVGSVIGSGAVD-----GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       169 klL~s-~--~fkaK~alL~aIGSiA~a~~~~-----~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .+|-+ .  ...+..+++.++..+..-...+     .-....++..|......++ ..|..++-.|.-|-.
T Consensus       189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence            55422 2  3456677888888766432221     0001123344444333333 345566666655543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.47  E-value=0.003  Score=63.09  Aligned_cols=43  Identities=9%  Similarity=0.122  Sum_probs=28.6

Q ss_pred             hhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHH
Q 007670           48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIST  105 (594)
Q Consensus        48 L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~A  105 (594)
                      |.....++++.+|.++...|         .+      ..+...++|++..||.+++..
T Consensus       103 L~~ll~D~d~~VR~~aA~~l---------~~------~~L~~L~~D~d~~VR~~aA~~  145 (244)
T 1lrv_A          103 LSALMFDEDREVRITVADRL---------PL------EQLEQMAADRDYLVRAYVVQR  145 (244)
T ss_dssp             GGGTTTCSCHHHHHHHHHHS---------CT------GGGGGGTTCSSHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHhC---------CH------HHHHHHHcCCCHHHHHHHHHh
Confidence            44445677888888877743         11      234555788888888887763

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=95.42  E-value=1.2  Score=44.88  Aligned_cols=201  Identities=12%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             HHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchH
Q 007670            4 ALKTSVNGLLNKLS--DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT   81 (594)
Q Consensus         4 ~Lk~rvl~~L~KLs--DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLp   81 (594)
                      .-+-||...|+.-.  .+|..=..+..+..++.+-+|+-+|-|+.-+.+...++...+||-++--|+.+|..+  -.+++
T Consensus        12 ~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k--~~l~~   89 (257)
T 3gs3_A           12 TARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK--VELLP   89 (257)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHH
T ss_pred             cHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            34567777777652  225444556666667777778779999999988876677889999998888877665  24788


Q ss_pred             HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc----chh------H-----HhHHHHHHHHccCCChhHHHHHHHHHH
Q 007670           82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAF------V-----TMLKLLSDALFTEQDTNAQVGAALCLA  146 (594)
Q Consensus        82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~----~~~------~-----~~lkPL~eaL~~eq~k~vQ~~Aa~ALa  146 (594)
                      ++++.+...|+|.|+.|-+-+..+.+.+-..+.+    .+.      .     .-+|--+-.++...+.++...+.--+.
T Consensus        90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e  169 (257)
T 3gs3_A           90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLE  169 (257)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            9999999999999998877777777766544432    211      1     144444444455557777777777777


Q ss_pred             HHHhhc--C--C------C--------cchhH---------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc
Q 007670          147 ATIDAA--Q--D------P--------DAGKL---------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG  199 (594)
Q Consensus       147 avvE~l--~--~------~--------i~~yL---------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py  199 (594)
                      .+|..-  +  +      +        ..+++         ..++.+|++.+.++..- -+.+..++++++...+.-+.|
T Consensus       170 ~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~is-s~~l~a~lnsL~~Iak~RP~~  248 (257)
T 3gs3_A          170 GVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHIS-SVNLIACTSSLCTIAKMRPIF  248 (257)
T ss_dssp             HHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccc-hHHHHHHHHHHHHHHHhCcHH
Confidence            777421  1  1      0        01222         34777888887765321 123555666666555554556


Q ss_pred             hHHHHHHH
Q 007670          200 LKGLVSCL  207 (594)
Q Consensus       200 f~~lm~~L  207 (594)
                      ...+++.+
T Consensus       249 ~~rIl~a~  256 (257)
T 3gs3_A          249 MGAVVEAF  256 (257)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            65566554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.06  E-value=0.11  Score=52.00  Aligned_cols=131  Identities=10%  Similarity=-0.043  Sum_probs=90.5

Q ss_pred             HHHHhhcC--CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhh-cCCCCCCcchHHHHHHHHHHHhhhccccchHHHHH
Q 007670            9 VNGLLNKL--SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILS-TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIIN   85 (594)
Q Consensus         9 vl~~L~KL--sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e-~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~   85 (594)
                      ++....+|  +|.|+.|+.+-.|  |.+. +  .....|..|.+ ....+.+.+|.-+-++|+-+|...    +.+.+++
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~l--Lg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~----~pe~~l~  142 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFL--FGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI----EYKKALP  142 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHH--HHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH----CTTTTHH
T ss_pred             HHHHHHHHHhCcchHHHHHHHHH--HHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc----CHHHHHH
Confidence            44455555  4557888766663  3333 3  34666666665 455667899999888888877522    2233677


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670           86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAAT  148 (594)
Q Consensus        86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaav  148 (594)
                      .+.+-++|++.-||+++.+.+--.+...........+.|+++.|.++++..||.+.+.+|--+
T Consensus       143 ~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~  205 (240)
T 3l9t_A          143 IIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDI  205 (240)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            888999999999999999887654432111123347889999998999999999999887654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=94.88  E-value=0.69  Score=52.37  Aligned_cols=119  Identities=15%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             HHHHHhhcC-CChhHHHHHHHHHHHHHhhc--------------------------CCCChHHHHHhhhhcCCCCCCcch
Q 007670            8 SVNGLLNKL-SDRDTYSQAAKELDSIAATV--------------------------DPTLLPTFLSCILSTNSSDKPGVR   60 (594)
Q Consensus         8 rvl~~L~KL-sDrDT~r~A~~eLD~LA~~L--------------------------ppe~lp~fLs~L~e~~ss~kp~~R   60 (594)
                      .++..|.+= .|.|+.+.+++.|-.+-..-                          .++.|+.++.+|    .+.+-++|
T Consensus        64 ~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL----~~~df~vR  139 (651)
T 3grl_A           64 HLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL----EEFDFHVR  139 (651)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHT----TCCCHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHh----cCccHHHH
Confidence            456666665 46678888888775433221                          122255555555    45778899


Q ss_pred             HHHHHHHHHHHhhh--ccccc---hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc-chhHH---hHHHHHHHHc
Q 007670           61 KECIHVIATLSNSH--NLSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAFVT---MLKLLSDALF  130 (594)
Q Consensus        61 KaaI~lLGvlae~h--~isph---LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-~~~~~---~lkPL~eaL~  130 (594)
                      -.++.+|.+|+...  -+...   -|.=++.++..|.|+.-.||..+.-.|..|+..-.+ +-..+   .+.+||..+-
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999998665  12221   235678889999999999999999888888876543 11222   2555555553

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.03  E-value=3.1  Score=49.37  Aligned_cols=195  Identities=11%  Similarity=0.065  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccc-cchHHHHHHHHhhhcCCCh
Q 007670           25 AAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLS-PYITKIINSITRNFRDKNS   96 (594)
Q Consensus        25 A~~eLD~LA~~Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~is-phLpkIL~~IvrrLkD~Ds   96 (594)
                      |++.|-.+....-|+.  +..|...+........+..|+.+++++|.|+.-+     .+. ..++.|...+.+.+...|.
T Consensus       375 a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~  454 (1056)
T 1lsh_A          375 ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE  454 (1056)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCCh
Confidence            4444444333333443  5555555532222346778999999999996554     222 3478888888888888888


Q ss_pred             hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc------CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 007670           97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL  170 (594)
Q Consensus        97 ~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~------eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~kl  170 (594)
                      .-+..++.|||.+...-       .+++|...|-+      +....++..|..||.++...       +-..+-+-++.+
T Consensus       455 ~~~~~~LkaLGN~g~p~-------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-------~p~~v~~il~~i  520 (1056)
T 1lsh_A          455 EEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-------DPRKVQEIVLPI  520 (1056)
T ss_dssp             HHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCChh-------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-------chHHHHHHHHHH
Confidence            88999999999998754       34444444422      11345777888888877642       222344456777


Q ss_pred             h--cCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcCCccchhh
Q 007670          171 L--KSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEKDAVPEFK  241 (594)
Q Consensus       171 L--~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~gd~f~py~  241 (594)
                      +  ...+..++.+++..+=   ..    -|- ...+..|..+|.. .+.+++....-.|-.||..-...+...+
T Consensus       521 ~~n~~e~~EvRiaA~~~Lm---~t----~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la  586 (1056)
T 1lsh_A          521 FLNVAIKSELRIRSCIVFF---ES----KPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVA  586 (1056)
T ss_dssp             HHCTTSCHHHHHHHHHHHH---HT----CCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred             hcCCCCChHHHHHHHHHHH---HH----CcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            7  3447777777554432   11    133 2567778888765 5899999999998888876544444443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=93.00  E-value=0.033  Score=55.58  Aligned_cols=44  Identities=9%  Similarity=0.136  Sum_probs=33.4

Q ss_pred             hhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHH
Q 007670           48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTV  106 (594)
Q Consensus        48 L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~AL  106 (594)
                      |.....++++.+|..+...|+         +      +.+.+.++|+|..||.+++..+
T Consensus        79 l~~L~~D~~~~VR~~aA~~L~---------~------~~L~~ll~D~d~~VR~~aA~~l  122 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRLP---------R------EQLSALMFDEDREVRITVADRL  122 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTSC---------S------GGGGGTTTCSCHHHHHHHHHHS
T ss_pred             HHHHccCcCHHHHHHHHHHCC---------H------HHHHHHHcCCCHHHHHHHHHhC
Confidence            444456789999999886532         1      3577889999999999988853

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=92.20  E-value=3.1  Score=48.12  Aligned_cols=225  Identities=12%  Similarity=0.120  Sum_probs=140.6

Q ss_pred             ChhHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC--CCCcch-HHHHHHHHHHHhhh----ccccchHHHHHH
Q 007670           18 DRDTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS--DKPGVR-KECIHVIATLSNSH----NLSPYITKIINS   86 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lpp---e~-lp~fLs~L~e~~ss--~kp~~R-KaaI~lLGvlae~h----~isphLpkIL~~   86 (594)
                      |.+....+...|..||. |.|   +. +|.+|.-+++++.+  -..++| .+++++|..+|..-    ...+||..||..
T Consensus       352 ~~~~~~~~~~~l~~La~-l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l  430 (799)
T 1vsy_4          352 NPDIANYYISCFAYLLE-LDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSM  430 (799)
T ss_dssp             SHHHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHh-cCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            55566788888888886 455   66 99999999999887  444554 56788888876555    335799999999


Q ss_pred             HHhhhcCCChhHHHHHHHHHHhhchhhhc-------c-------------------------------------------
Q 007670           87 ITRNFRDKNSALQATCISTVSSLSPRVGA-------S-------------------------------------------  116 (594)
Q Consensus        87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-------~-------------------------------------------  116 (594)
                      .+-++-=.|+.--.++...+..++.++.=       .                                           
T Consensus       431 ~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT  510 (799)
T 1vsy_4          431 LVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKAST  510 (799)
T ss_dssp             HHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHT
T ss_pred             HhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHH
Confidence            99999778876555666666555543320       0                                           


Q ss_pred             -hhHH----hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchh-hHHHHHHH----H
Q 007670          117 -AFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK-AKAAGLVV----V  186 (594)
Q Consensus       117 -~~~~----~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fk-aK~alL~a----I  186 (594)
                       .+..    |+.=+|..+-+..+..+-.+-..++..+++.+.+   +.+...+.++.+...+..+. +..++-..    +
T Consensus       511 ~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~  587 (799)
T 1vsy_4          511 TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPL  587 (799)
T ss_dssp             STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence             0111    3333333332223444444555556666666665   56777788888877666433 32333333    5


Q ss_pred             HHHHhcCcCcCCchHHHHHHHHhh----hcC-------------Cc----HHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670          187 GSVIGSGAVDGSGLKGLVSCLLGF----LSS-------------QD----WAARKAAAEALWRLAVVEKDAVPEFKGKCL  245 (594)
Q Consensus       187 GSiA~a~~~~~pyf~~lm~~L~e~----L~s-------------eD----w~lRKaAaDaLg~IA~a~gd~f~py~~~~m  245 (594)
                      ++++.+..+.   |..++|.|..-    +.+             .|    |.     +-.|+.+....|..+-+|.++++
T Consensus       588 ~a~~~~~P~~---~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~-----l~iL~~~v~~~g~~lL~y~deL~  659 (799)
T 1vsy_4          588 AALVRRNNGL---SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLY-----LTALNDVLRNCHESLLEYSDELI  659 (799)
T ss_dssp             HHHHHHCGGG---HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHH-----HHHHHHHHTTTGGGGGTTHHHHH
T ss_pred             HHHHHhCHHH---HHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHH-----HHHHHHHHhcCcHHHHccHHHHH
Confidence            6666665442   44444444322    211             11    55     45666666677888999999999


Q ss_pred             HHHHhcchhH
Q 007670          246 KIFESKRFDK  255 (594)
Q Consensus       246 ~sLEs~RfDK  255 (594)
                      .++.-+ ++|
T Consensus       660 ~il~~~-~~~  668 (799)
T 1vsy_4          660 TFMKYL-YDN  668 (799)
T ss_dssp             HHHHHH-HHS
T ss_pred             HHHHHH-HHH
Confidence            888866 544

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=91.48  E-value=0.91  Score=44.13  Aligned_cols=140  Identities=15%  Similarity=0.206  Sum_probs=85.4

Q ss_pred             HHHHHHHhhcCCCC-hHHHHHhhhhcC-CCCCCcchHHHHH-HHHH-HHhhh-ccccchHHHHHHHHhhhcC---CChhH
Q 007670           27 KELDSIAATVDPTL-LPTFLSCILSTN-SSDKPGVRKECIH-VIAT-LSNSH-NLSPYITKIINSITRNFRD---KNSAL   98 (594)
Q Consensus        27 ~eLD~LA~~Lppe~-lp~fLs~L~e~~-ss~kp~~RKaaI~-lLGv-lae~h-~isphLpkIL~~IvrrLkD---~Ds~V   98 (594)
                      ..|..+..+--=++ +|.|+..|.+.. .+.+....-..++ ..-. +..-+ ++.|||..++|.|..-+=.   ....+
T Consensus        27 ~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~L  106 (196)
T 4atg_A           27 IAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDV  106 (196)
T ss_dssp             HHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHH
T ss_pred             HHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHH
Confidence            34555566544455 888888886653 2222222222222 2222 23444 9999999888877744311   11279


Q ss_pred             HHHHHHHHHhhchhhhcc--hhHH-hHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHH
Q 007670           99 QATCISTVSSLSPRVGAS--AFVT-MLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVR  166 (594)
Q Consensus        99 R~Ac~~ALG~LAe~l~~~--~~~~-~lkPL~eaL~~eq-~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~R  166 (594)
                      |+-++..|+.++......  .... +++-|..+|++.. ....+-||..+|.++...+-.. +.|.++.+..+
T Consensus       107 Rd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~  179 (196)
T 4atg_A          107 RKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRT  179 (196)
T ss_dssp             HHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHH
Confidence            999999999999998652  2222 7788888887543 4555669999999987754333 23555555444

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=89.35  E-value=5.9  Score=38.43  Aligned_cols=117  Identities=11%  Similarity=0.056  Sum_probs=72.8

Q ss_pred             HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc---chhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670          120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD---AGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV  195 (594)
Q Consensus       120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i---~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~  195 (594)
                      .|+.=+.+++.+    .....   ||+.+=.  ++.+   +||| ..+.+.+..-++  +...=..++..+.|+..=...
T Consensus        11 ~yf~~It~a~~~----~~r~~---aL~sL~~--D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l   79 (196)
T 4atg_A           11 LYFDKILSMIKS----DMKDI---AIECLEK--ESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHV   79 (196)
T ss_dssp             HHHHHHHHHHTS----TTHHH---HHHHHHH--CSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHh----HHHHH---HHHHHhc--CCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCC
Confidence            378888888865    22222   2333322  3333   4443 234444444443  444445567777777755555


Q ss_pred             cC-CchHHHHHHHHhhhcC----CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH
Q 007670          196 DG-SGLKGLVSCLLGFLSS----QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF  248 (594)
Q Consensus       196 ~~-pyf~~lm~~L~e~L~s----eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL  248 (594)
                      +. ||+-++||.+..|+..    .+ .+|.-|+..|+.|+...|+........+++.|
T Consensus        80 ~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl  136 (196)
T 4atg_A           80 FIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTL  136 (196)
T ss_dssp             CCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHH
Confidence            54 9999999999999853    23 89999999999999988754444444444433

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=85.98  E-value=18  Score=39.76  Aligned_cols=88  Identities=10%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCC
Q 007670           18 DRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDK   94 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~   94 (594)
                      +.-+-++|++-+-....+.|.-+   |..+++++.    .++..+|+.||+.|..+|..    .|+++|.-++++.|+--
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE----Ded~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtd  112 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCE----DEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTD  112 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT----CSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhcc
Confidence            45588999999999999987433   666666555    46778999999999999987    78999999999999988


Q ss_pred             ChhHHHHHHHHHHhhchhh
Q 007670           95 NSALQATCISTVSSLSPRV  113 (594)
Q Consensus        95 Ds~VR~Ac~~ALG~LAe~l  113 (594)
                      |+.-+.+.-.+|-.|-..-
T Consensus       113 d~~E~~~V~~sL~sllk~D  131 (507)
T 3u0r_A          113 DSAEFNLVNNALLSIFKMD  131 (507)
T ss_dssp             CHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHhcC
Confidence            8887777777665554443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=85.73  E-value=8  Score=43.82  Aligned_cols=149  Identities=15%  Similarity=0.096  Sum_probs=100.6

Q ss_pred             hHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhc---CC
Q 007670           80 ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAA---QD  154 (594)
Q Consensus        80 LpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq-~k~vQ~~Aa~ALaavvE~l---~~  154 (594)
                      -..-++.++.||+...- .=|++|+.+|-.|+..+.......-+++|+..|-.+. |...-..   +|+.++--.   ++
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~---~LetL~~l~~~~~~   95 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGY---ALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHH---HHHHHHHHHCCC--
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHH---HHHHHHHHhCCCCc
Confidence            45677888889976543 3499999999999988743323337999999995432 3322222   344442211   11


Q ss_pred             C------------cchhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCc---hHHHHHHHHhhh
Q 007670          155 P------------DAGKL-------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSG---LKGLVSCLLGFL  211 (594)
Q Consensus       155 ~------------i~~yL-------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~py---f~~lm~~L~e~L  211 (594)
                      +            +.-.+       +.-++-|+.+|++.+|.+|-..+.++..+..+-.. ...+   .+..++.|.++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence            0            00111       22456689999999999999999999988866433 2111   124689999999


Q ss_pred             cCCcHHHHHHHHHHHHHHHH
Q 007670          212 SSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       212 ~seDw~lRKaAaDaLg~IA~  231 (594)
                      .++--.+|..|+..|..|..
T Consensus       176 ~d~rE~iRneallLL~~Lt~  195 (651)
T 3grl_A          176 ADSREVIRNDGVLLLQALTR  195 (651)
T ss_dssp             GCSSHHHHHHHHHHHHHHHT
T ss_pred             hCchHHHHHHHHHHHHHHhc
Confidence            99889999999999998886

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=83.54  E-value=2.5  Score=50.00  Aligned_cols=107  Identities=12%  Similarity=0.128  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHhhc-CCChh---HHHHHHHHHHHHHhhc-CCCChHHHHHhhhhcCCCC------------CCcchHHHH
Q 007670            2 AHALKTSVNGLLNK-LSDRD---TYSQAAKELDSIAATV-DPTLLPTFLSCILSTNSSD------------KPGVRKECI   64 (594)
Q Consensus         2 ~~~Lk~rvl~~L~K-LsDrD---T~r~A~~eLD~LA~~L-ppe~lp~fLs~L~e~~ss~------------kp~~RKaaI   64 (594)
                      .++-+.+|+.++.+ |.|..   -+..|+..|=.|.... +...+..++..+.+-....            .-..|=+||
T Consensus       837 ~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aV  916 (997)
T 1vsy_5          837 TEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNV  916 (997)
T ss_dssp             CTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHH
Confidence            34556788888888 68877   8899999999998876 5233444444444332110            014677899


Q ss_pred             HHHHHHHhhh-ccc---cchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670           65 HVIATLSNSH-NLS---PYITKIINSITRNFRDKNSALQATCISTVSSL  109 (594)
Q Consensus        65 ~lLGvlae~h-~is---phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L  109 (594)
                      +.||.++..+ +-.   ++||++|..+.+...||++ |+.++-.|++-|
T Consensus       917 LgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseF  964 (997)
T 1vsy_5          917 LGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEF  964 (997)
T ss_dssp             HHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Confidence            9999999999 665   5999999999999999876 998988888765

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19

Probab=82.16  E-value=30  Score=35.94  Aligned_cols=155  Identities=12%  Similarity=0.212  Sum_probs=105.5

Q ss_pred             hHHHHHhh-hhcCCCCCCcchH-HHHHHHHHHHhhh--ccccchHHHHHHHH----hhhcC---CChhHHHHHHHHHHhh
Q 007670           41 LPTFLSCI-LSTNSSDKPGVRK-ECIHVIATLSNSH--NLSPYITKIINSIT----RNFRD---KNSALQATCISTVSSL  109 (594)
Q Consensus        41 lp~fLs~L-~e~~ss~kp~~RK-aaI~lLGvlae~h--~isphLpkIL~~Iv----rrLkD---~Ds~VR~Ac~~ALG~L  109 (594)
                      +|+++..+ .||..+ -|..|. +.+.++++++.-.  .+.|++|.|+..|.    .-+++   .-|-.|.+=..=|.++
T Consensus        71 ippLl~~VL~DY~~~-vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai  149 (321)
T 1w9c_A           71 VPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV  149 (321)
T ss_dssp             HHHHHHHHHHHHHTS-CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence            89999766 777553 566775 5566677776666  89999999998876    23332   2356676666666666


Q ss_pred             chhhhcch--hH-HhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcC--CCcc-----hhHHHHHHHHHHHhcCC--
Q 007670          110 SPRVGASA--FV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQ--DPDA-----GKLGRMEVRLERLLKSE--  174 (594)
Q Consensus       110 Ae~l~~~~--~~-~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~--~~i~-----~yL~~L~~RL~klL~s~--  174 (594)
                      ..++-..-  .. ..++-+++++.   .+.++++...+..+|..++++..  +...     .|+-.++..++..|...  
T Consensus       150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H  229 (321)
T 1w9c_A          150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH  229 (321)
T ss_dssp             HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence            66653210  11 25666666664   67899999999999999999974  2222     35566777777777433  


Q ss_pred             --chhhHHHHHHHHHHHHhcCcCc
Q 007670          175 --VFKAKAAGLVVVGSVIGSGAVD  196 (594)
Q Consensus       175 --~fkaK~alL~aIGSiA~a~~~~  196 (594)
                        +|+....+|.-+-.++..+...
T Consensus       230 k~gF~~q~~iL~~lf~~ve~~~i~  253 (321)
T 1w9c_A          230 TAGLTMHASILAYMFNLVEEGKIS  253 (321)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred             hccHHHHHHHHHHHHHHHHcCccc
Confidence              7888888888888877666543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=80.92  E-value=14  Score=43.74  Aligned_cols=183  Identities=13%  Similarity=0.073  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHH
Q 007670           25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS  104 (594)
Q Consensus        25 A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~  104 (594)
                      .+-.|-.+.+.++.++|..++..+.+     ++.+|+--+-+|+.+...        .-+.+|...++..+...-+ +..
T Consensus       312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~-----~~~~r~~~lDal~~aGT~--------~a~~~i~~~i~~~~l~~~e-a~~  377 (1056)
T 1lsh_A          312 KFLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMATS--------EALLFLKRTLASEQLTSAE-ATQ  377 (1056)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCSH--------HHHHHHHHHHHTTCSCHHH-HHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhc-----cHHHHHHHHHHhHhcCCH--------HHHHHHHHHHHcCCCCHHH-HHH
Confidence            34445556666676666666666552     344565433333333111        1123333334444433333 334


Q ss_pred             HHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhc--C-CC-cchhHHHHHHHHHHHhcCCchh
Q 007670          105 TVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAA--Q-DP-DAGKLGRMEVRLERLLKSEVFK  177 (594)
Q Consensus       105 ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l--~-~~-i~~yL~~L~~RL~klL~s~~fk  177 (594)
                      +|+.+. ++. .|...+++-+++-+.   ..+++.+...|.+++..+|-..  . .. ..++++.+...|.+.++..+..
T Consensus       378 ~l~~~~-~~~-~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~  455 (1056)
T 1lsh_A          378 IVASTL-SNQ-QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEE  455 (1056)
T ss_dssp             HHHHHH-HTC-CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhh-ccC-CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChH
Confidence            444322 332 232234443333332   1245666678899999998764  1 12 2467888888888888887777


Q ss_pred             hHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-------CCcHHHHHHHHHHHHHHHHH
Q 007670          178 AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-------SQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       178 aK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-------seDw~lRKaAaDaLg~IA~a  232 (594)
                      -+...|-|||-+.+         +..++.|..||.       +....+|.+|+.||..++..
T Consensus       456 ~~~~~LkaLGN~g~---------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~  508 (1056)
T 1lsh_A          456 EIVLALKALGNAGQ---------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR  508 (1056)
T ss_dssp             HHHHHHHHHHHHTC---------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred             HHHHHHHHhhccCC---------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence            77777878884322         234556666653       22467888898888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	594
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	9e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.003

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 31/211 (14%), Positives = 64/211 (30%), Gaps = 12/211 (5%)

Query: 82  KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGA 141
           K++  I +   DKN  +Q   +  +  L  +V      T++  L   +        +  +
Sbjct: 45  KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNM-LSDKEQLRDIS 103

Query: 142 ALCLAATIDAAQDPDAGKLGR-------MEVRLERLLKSEVFKAKAAGLVVVGSVIGS-G 193
           ++ L   I       +G                  + K E    +   L ++  ++   G
Sbjct: 104 SIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163

Query: 194 AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA-VVEKDAVPEFKGKCLKIFESKR 252
            +  +    +++CLL  L+S   A RK    AL  L          +     L       
Sbjct: 164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND 223

Query: 253 FDKMIEAWKQVPDLSEEASPPPQSLDPSKED 283
                  + Q   ++  +      +    E 
Sbjct: 224 SMSTTRTYIQC--IAAISRQAGHRIGEYLEK 252

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 7e-07
 Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 19/234 (8%)

Query: 9   VNGLLNKLSDRDT-YSQAA-----KELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKE 62
           ++ LL K++  D  +   A      EL   +  +D       +  IL         V+  
Sbjct: 5   ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64

Query: 63  CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQ---ATCISTVSSLSPR------V 113
            +  +  L  S      +  I++++  N       L+   +  + TV    P       +
Sbjct: 65  AVKCLGPLV-SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 123

Query: 114 GASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173
            A+    +   L+ A+  ++D + Q+ A   +A  +             +   L   L S
Sbjct: 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183

Query: 174 EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLL-GFLSSQDWAARKAAAEAL 226
                +   ++ +G ++ S          L+  LL     +   +  +   + +
Sbjct: 184 PRLAVRKRTIIALGHLVMS--CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCI 235

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 4/165 (2%)

Query: 73  SHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE 132
           S ++   +  ++ S        ++ L       V+  +          +   +       
Sbjct: 728 SGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTAL 787

Query: 133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192
               +    A C+AA   A        +G+    ++    ++  +  A  L+ +G V   
Sbjct: 788 THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLA--LLSLGEVGHH 845

Query: 193 GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237
             +D SG   L S +L   SS     + AA+ AL  ++V      
Sbjct: 846 --IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEY 888

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 35/246 (14%), Positives = 75/246 (30%), Gaps = 18/246 (7%)

Query: 12  LLNKLSDRDTY--SQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIAT 69
            LN + D      +     + +IA+  +    P  L  + S   S+     +     +  
Sbjct: 93  CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQK 152

Query: 70  LS-------NSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
           +        +S  L   +  +I    + F+  +  +++  ++ V+        +  + + 
Sbjct: 153 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID 212

Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS------EVF 176
               +      D   +V   +C A  +      D      M   +E +L+        V 
Sbjct: 213 SFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL-PHMHNIVEYMLQRTQDQDENVA 271

Query: 177 KAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL--SSQDWAARKAAAEALWRLAVVEK 234
                  + +        V    L  L+  L+  +  S  D    K   E    +   E+
Sbjct: 272 LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQ 331

Query: 235 DAVPEF 240
           D  P F
Sbjct: 332 DIRPRF 337

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 20  DTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---HNL 76
           +    A   L  +A   +  ++P  L  I     +     R   +     +        L
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401

Query: 77  SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118
            P + + + ++    +D +  ++ T   TV  +   +  +A 
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 443

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	594
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.78
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.59
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.42
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.35
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.34
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.31
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.21
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.17
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.77
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.75
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.73
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.63
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.62
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.62
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.53
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.52
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.47
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.41
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.37
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.25
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.23
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.19
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.18
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.77
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.91
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	92.28
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.11

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-18  Score=193.98  Aligned_cols=223  Identities=16%  Similarity=0.119  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL   98 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~V   98 (594)
                      .+++|...|+.++..++.+-++.+++.+.+...+++|..|.+++++||.+++++  .+.||++.++++++..|+|+++.|
T Consensus       373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~V  452 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV  452 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHH
Confidence            578899999999988877779999999999999999999999999999999999  889999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcchhHH----hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q 007670           99 QATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE  174 (594)
Q Consensus        99 R~Ac~~ALG~LAe~l~~~~~~~----~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~  174 (594)
                      |.++++++|++++++.......    ++..|+..+ .+.++.||.+||.||..++|.+.+...+|++.+++.|.++|+..
T Consensus       453 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~  531 (888)
T d1qbkb_         453 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY  531 (888)
T ss_dssp             HHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh
Confidence            9999999999999986543322    555566666 56789999999999999999999999999999999999999888


Q ss_pred             chhhHHHHHHHHHHHHhcCcC-c--CCchHHHHHHHHhhhc---CCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670          175 VFKAKAAGLVVVGSVIGSGAV-D--GSGLKGLVSCLLGFLS---SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL  245 (594)
Q Consensus       175 ~fkaK~alL~aIGSiA~a~~~-~--~pyf~~lm~~L~e~L~---seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m  245 (594)
                      .-+.+..++.++++++...+. .  .+|.+.+++.+.+.+.   +++- .+..+.++|+.++...|+.|.||...++
T Consensus       532 ~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~  607 (888)
T d1qbkb_         532 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVY  607 (888)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHH
Confidence            878888899999999855433 3  3788888998888764   2332 2335789999999999999999875544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.5e-14  Score=152.11  Aligned_cols=245  Identities=11%  Similarity=0.112  Sum_probs=197.6

Q ss_pred             HHHHHHHHhhcCCCh------hHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---c
Q 007670            5 LKTSVNGLLNKLSDR------DTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---N   75 (594)
Q Consensus         5 Lk~rvl~~L~KLsDr------DT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~   75 (594)
                      +...++..+.+..+.      .....+...|+.++..++.+.++.++..+.....+.+|..|.+++.+||.+++++   .
T Consensus       325 i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  404 (861)
T d2bpta1         325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ  404 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Confidence            344455555555322      2677888899999999988779999999999999999999999999999998877   6


Q ss_pred             cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---------------------h-----------------
Q 007670           76 LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------A-----------------  117 (594)
Q Consensus        76 isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---------------------~-----------------  117 (594)
                      +.+|++.+++.+++.+.|+++.||.++++++|++++++...                     +                 
T Consensus       405 ~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~  484 (861)
T d2bpta1         405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQL  484 (861)
T ss_dssp             HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999998765310                     0                 


Q ss_pred             -------h----HHh-----------------------------------------------------------------
Q 007670          118 -------F----VTM-----------------------------------------------------------------  121 (594)
Q Consensus       118 -------~----~~~-----------------------------------------------------------------  121 (594)
                             .    ..+                                                                 
T Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~  564 (861)
T d2bpta1         485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLE  564 (861)
T ss_dssp             SSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred             hhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                   0    000                                                                 


Q ss_pred             ------------------------------HHHHHHHHc----cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 007670          122 ------------------------------LKLLSDALF----TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL  167 (594)
Q Consensus       122 ------------------------------lkPL~eaL~----~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL  167 (594)
                                                    +.+++..++    ...+..++..++.|+.++++.+++...+|++.++|-|
T Consensus       565 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l  644 (861)
T d2bpta1         565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL  644 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence                                          001111111    1223345567888888888888888889999999999


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCccchhhhHH
Q 007670          168 ERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKC  244 (594)
Q Consensus       168 ~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~  244 (594)
                      .+.|++....++..++++||.++.+.+. +.||++.+++.|.+.|.++  ++.+|.+++.+||.|+...|+.|.||...+
T Consensus       645 ~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~  724 (861)
T d2bpta1         645 LKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDI  724 (861)
T ss_dssp             HHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999977655 4699999999999999864  678999999999999999999999999999


Q ss_pred             HHHHH
Q 007670          245 LKIFE  249 (594)
Q Consensus       245 m~sLE  249 (594)
                      +..+.
T Consensus       725 ~~~l~  729 (861)
T d2bpta1         725 MALCV  729 (861)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97664

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.4e-12  Score=139.46  Aligned_cols=246  Identities=13%  Similarity=0.136  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChh
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA   97 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~   97 (594)
                      ....|...|+.++..++.+.++.+++.+.+...+++|..|.+++.+||.+++++   .+.++++.+++.++..+.|+++.
T Consensus       344 ~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~  423 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccH
Confidence            778888999999999887779999999999999999999999999999998876   78899999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcchhH-HhHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhcC--------------CCcchhH
Q 007670           98 LQATCISTVSSLSPRVGASAFV-TMLKLLSDALFT--EQDTNAQVGAALCLAATIDAAQ--------------DPDAGKL  160 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~~~~-~~lkPL~eaL~~--eq~k~vQ~~Aa~ALaavvE~l~--------------~~i~~yL  160 (594)
                      ||.++++++|++++++...... .++.+++..++.  +.++.++..+|.++..+++...              ..+.+|+
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  503 (876)
T d1qgra_         424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF  503 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH
T ss_pred             HHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999998543211 134444444431  2456667666666666554310              0011122


Q ss_pred             HH------------------------------------------------------------------------------
Q 007670          161 GR------------------------------------------------------------------------------  162 (594)
Q Consensus       161 ~~------------------------------------------------------------------------------  162 (594)
                      +.                                                                              
T Consensus       504 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  583 (876)
T d1qgra_         504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL  583 (876)
T ss_dssp             HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHH
Confidence            22                                                                              


Q ss_pred             -----------------------HHHHHHHHhcC--CchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcC-Cc
Q 007670          163 -----------------------MEVRLERLLKS--EVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSS-QD  215 (594)
Q Consensus       163 -----------------------L~~RL~klL~s--~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~s-eD  215 (594)
                                             +++-+..+|..  ++..++..++.++++++.+.+. +.||++.++|.|...|.+ ++
T Consensus       584 l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~  663 (876)
T d1qgra_         584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE  663 (876)
T ss_dssp             HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCc
Confidence                                   22222222221  1223344566677777755444 569999999999999975 56


Q ss_pred             HHHHHHHHHHHHHHHHHcCCccchhhhHHHHH----HHhcch---hH--HHHHHhhcCCC
Q 007670          216 WAARKAAAEALWRLAVVEKDAVPEFKGKCLKI----FESKRF---DK--MIEAWKQVPDL  266 (594)
Q Consensus       216 w~lRKaAaDaLg~IA~a~gd~f~py~~~~m~s----LEs~Rf---DK--~i~lWk~i~~v  266 (594)
                      +.+|.+|+++|+.++...++.|.||...++..    |++--+   .|  ++.++..|...
T Consensus       664 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~  723 (876)
T d1qgra_         664 YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA  723 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999877753    333323   23  67777776533

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=137.32  Aligned_cols=242  Identities=14%  Similarity=0.131  Sum_probs=171.2

Q ss_pred             hHHHHHHHHHhhcC-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc
Q 007670            3 HALKTSVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP   78 (594)
Q Consensus         3 ~~Lk~rvl~~L~KL-sDrD--T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp   78 (594)
                      +..+..++..+.+| .|.+  -++.|+..|-.++..++.+. .+.+++.+.+...++++.+|+.++.+++.++...--..
T Consensus       159 ~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~  238 (588)
T d1b3ua_         159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED  238 (588)
T ss_dssp             HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH
Confidence            34556666666666 4555  56888899999999887665 34555666666667888999999999998876552234


Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc--
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD--  156 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i--  156 (594)
                      +...++|.+...++|++..||.+++.++|.++..+........+.|++..++.+.++.++..|+.+|..+++.++...  
T Consensus       239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence            566788999999999999999999999999998875433334555666666688899999999999999999876554  


Q ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-Cc-------------------------------C----cC--C
Q 007670          157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GA-------------------------------V----DG--S  198 (594)
Q Consensus       157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~-------------------------------~----~~--p  198 (594)
                      ..++..+++.+.+++++++..++..+..+++.++.. +.                               .    .+  .
T Consensus       319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~  398 (588)
T d1b3ua_         319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ  398 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH
T ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhh
Confidence            346677888888888877777776665554443311 00                               0    00  2


Q ss_pred             chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHH
Q 007670          199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKC  244 (594)
Q Consensus       199 yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~  244 (594)
                      ..+.+++.+.+.+.+.+|.+|.+++++|+.++...| +.|.++...+
T Consensus       399 ~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~  445 (588)
T d1b3ua_         399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL  445 (588)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred             hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHH
Confidence            244556666666777788888888888888877765 4554444333

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.2e-12  Score=132.22  Aligned_cols=226  Identities=15%  Similarity=0.155  Sum_probs=153.8

Q ss_pred             HHHHHHhhcC-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----cccc
Q 007670            7 TSVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSP   78 (594)
Q Consensus         7 ~rvl~~L~KL-sDrD--T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isp   78 (594)
                      ..++..+..+ .|.+  ....+++.|-.++..++++. ...++..+.....+.++.+|.+++..++.++...    ...+
T Consensus       241 ~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~  320 (588)
T d1b3ua_         241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV  320 (588)
T ss_dssp             HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3344444443 3333  55566666666666655433 2223333333334456667777777777766543    2334


Q ss_pred             chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670           79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG  158 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~  158 (594)
                      ++++|+|.+.+.+.|++..||.+++.+++.++..+.+......+.|.+..++.+.++.++.+++.++..+.+..+.  ..
T Consensus       321 ~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~  398 (588)
T d1b3ua_         321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ  398 (588)
T ss_dssp             HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH
T ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hh
Confidence            5677777777777777777777777777776666543332234445555555788999999999999999887642  24


Q ss_pred             hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670          159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD  235 (594)
Q Consensus       159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd  235 (594)
                      +.+.|++.+..++++++.+.+.+++.+++.+++.-+.. -+-+.+++.+..+|.++.|.+|.+|+.+|+.|+...|.
T Consensus       399 ~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~  474 (588)
T d1b3ua_         399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK  474 (588)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred             hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChH-hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc
Confidence            56779999999999999999999999999988543221 22345678888889999999999999999999998773

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4e-11  Score=132.65  Aligned_cols=235  Identities=14%  Similarity=0.158  Sum_probs=182.2

Q ss_pred             HhhcCCChhH--HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHH
Q 007670           12 LLNKLSDRDT--YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKI   83 (594)
Q Consensus        12 ~L~KLsDrDT--~r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkI   83 (594)
                      .+.-|.|.++  +..|+..|-.++..+.++.    +.+++..|.....++++.+|.+|..+|+.+++..  .+.||++.|
T Consensus       441 l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~i  520 (888)
T d1qbkb_         441 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYI  520 (888)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            3444566663  5667778887777664332    5667777777777788899999999999999877  888999999


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---h-hH----------------------------------------
Q 007670           84 INSITRNFRDKNSALQATCISTVSSLSPRVGAS---A-FV----------------------------------------  119 (594)
Q Consensus        84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~----------------------------------------  119 (594)
                      ++.+.+.+++.+..++.++.++++.+++.+...   + ..                                        
T Consensus       521 l~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~  600 (888)
T d1qbkb_         521 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL  600 (888)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHh
Confidence            999999999999999999999999988654310   0 00                                        


Q ss_pred             HhHHHHHHHHc--------------------cCCChhHHHHHHHHHHHHHhhcCCCcchhHHH--HHHHHHHHhcCCchh
Q 007670          120 TMLKLLSDALF--------------------TEQDTNAQVGAALCLAATIDAAQDPDAGKLGR--MEVRLERLLKSEVFK  177 (594)
Q Consensus       120 ~~lkPL~eaL~--------------------~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~--L~~RL~klL~s~~fk  177 (594)
                      .+..|++..++                    ...++.....+.-++..+++.++....+++..  +++-+.+++++....
T Consensus       601 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         601 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence            01222222111                    11244555667777888888888777777654  788899999999999


Q ss_pred             hHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670          178 AKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK  246 (594)
Q Consensus       178 aK~alL~aIGSiA~a~-~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~  246 (594)
                      ++..++.++|.++... ..+.||++.+|+.|...|.++++.++..|+-++|.||...|+.|.||...++.
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~  750 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLH  750 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9999999999999665 44569999999999999999999999999999999999999999999877774

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-11  Score=139.81  Aligned_cols=230  Identities=15%  Similarity=0.202  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCC---------hHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHH
Q 007670           21 TYSQAAKELDSIAATVDPTL---------LPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSIT   88 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~---------lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Iv   88 (594)
                      ....+...|..+...++...         ++.++..+.+.. ...++.+|.+++..|+.++..+  .+.|+.+.+++.++
T Consensus        99 ~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~  178 (1207)
T d1u6gc_          99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL  178 (1207)
T ss_dssp             HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHG
T ss_pred             hhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence            34444555555555554221         233334443332 2334567888888888887766  78899999999999


Q ss_pred             hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 007670           89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE  168 (594)
Q Consensus        89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~  168 (594)
                      ..|.|+++.||.+|+.+++.++.++.+.-+..++..++..|..+.+..+..+++.||..++...+....+|++.+++-++
T Consensus       179 ~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~  258 (1207)
T d1u6gc_         179 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV  258 (1207)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHH
Confidence            99999999999999999999999885443444788888888666666677788999999999998888899999999999


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhc-----------------------------------
Q 007670          169 RLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLS-----------------------------------  212 (594)
Q Consensus       169 klL~s~~fkaK~alL~aIGSiA~a~-~~~~pyf~~lm~~L~e~L~-----------------------------------  212 (594)
                      +.++.++..++..++.++.+++... ..+.||+..+++.+..++.                                   
T Consensus       259 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (1207)
T d1u6gc_         259 KFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD  338 (1207)
T ss_dssp             HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------------------
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhh
Confidence            9999999999999999999988654 4456999999888876653                                   


Q ss_pred             --CCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHh
Q 007670          213 --SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFES  250 (594)
Q Consensus       213 --seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs  250 (594)
                        +..|.+|++|+.+|+.++...++.+.++...++..|-.
T Consensus       339 ~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~  378 (1207)
T d1u6gc_         339 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALIS  378 (1207)
T ss_dssp             ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHS
T ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12499999999999999988888888887777765543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.7e-10  Score=112.11  Aligned_cols=240  Identities=11%  Similarity=0.120  Sum_probs=176.1

Q ss_pred             HHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcCC----CC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--cc
Q 007670            5 LKTSVNGLLNKL-SDRDTYSQAAKELDSIAATVDP----TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL   76 (594)
Q Consensus         5 Lk~rvl~~L~KL-sDrDT~r~A~~eLD~LA~~Lpp----e~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~i   76 (594)
                      +...+++.|+.= .+.+-...|+..+-.+...++.    +. .+.++..+.+...++++.+|+.++.+|+.+++.+  .+
T Consensus       172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            344445544331 1234566677777766655431    22 5667778888888899999999999999999988  88


Q ss_pred             ccchHHHHH-HHHhhhcCCChhHHHHHHHHHHhhchhhhcc------------------h-h-HH---hHHHH-HHHHc-
Q 007670           77 SPYITKIIN-SITRNFRDKNSALQATCISTVSSLSPRVGAS------------------A-F-VT---MLKLL-SDALF-  130 (594)
Q Consensus        77 sphLpkIL~-~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~------------------~-~-~~---~lkPL-~eaL~-  130 (594)
                      .||+..++. .+...+++.+..|+..+++.+..+++...+.                  . . ..   .+.|. .+.+. 
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  331 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  331 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            899877655 5567788999999999999999988755320                  0 0 01   22232 23221 


Q ss_pred             -----cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cCcC-cCCchHHH
Q 007670          131 -----TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAV-DGSGLKGL  203 (594)
Q Consensus       131 -----~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~-a~~~-~~pyf~~l  203 (594)
                           .+.+..+..+|+.|+..+++..++.   +++.+++-+...|++++.++|.+++-++|+++. ..+. ..+|++.+
T Consensus       332 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i  408 (458)
T d1ibrb_         332 QDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA  408 (458)
T ss_dssp             CCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTH
T ss_pred             chhhhccccccHHHHHHHHHHHHHHhccHh---hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence                 1234457788999999999988763   678889999999999999999999999999884 3344 45999999


Q ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC--ccchhhhHHHHH
Q 007670          204 VSCLLGFLSSQDWAARKAAAEALWRLAVVEKD--AVPEFKGKCLKI  247 (594)
Q Consensus       204 m~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd--~f~py~~~~m~s  247 (594)
                      ++.|.++|.+++..+|.+|+.+||.++...++  ....|...+|..
T Consensus       409 ~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~  454 (458)
T d1ibrb_         409 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC  454 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence            99999999999999999999999999998763  334455665543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=8.2e-10  Score=116.92  Aligned_cols=230  Identities=16%  Similarity=0.189  Sum_probs=171.5

Q ss_pred             hhHHHHHHHHHHHHHhhcCCCC-------hHHHHHhhhhcCCCCCCc-----------chHHHHHHHHHHHhhh--cccc
Q 007670           19 RDTYSQAAKELDSIAATVDPTL-------LPTFLSCILSTNSSDKPG-----------VRKECIHVIATLSNSH--NLSP   78 (594)
Q Consensus        19 rDT~r~A~~eLD~LA~~Lppe~-------lp~fLs~L~e~~ss~kp~-----------~RKaaI~lLGvlae~h--~isp   78 (594)
                      ......++..|..++...+.+.       ++.+...+..........           .+...+..++.+...+  .+.|
T Consensus       514 ~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  593 (861)
T d2bpta1         514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP  593 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            3466778888888888876543       233333444333322221           2333444555555554  7889


Q ss_pred             chHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcc--hh-HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670           79 YITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGAS--AF-VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD  154 (594)
Q Consensus        79 hLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~--~~-~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~  154 (594)
                      +++.|+..+.+.+.+.+. .||+.++.+++.++..+.+.  +. ..+++.|+..| .+.+..+...|+.++..++...++
T Consensus       594 ~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l-~~~~~~v~~~a~~~l~~i~~~~~~  672 (861)
T d2bpta1         594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEE  672 (861)
T ss_dssp             GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHh-CCCCHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999987664 68999999999999988543  22 23677777777 567777888899999999999988


Q ss_pred             CcchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCC------c-----HHHHH
Q 007670          155 PDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQ------D-----WAARK  220 (594)
Q Consensus       155 ~i~~yL~~L~~RL~klL~s~--~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~se------D-----w~lRK  220 (594)
                      ...+|++.+++.|++.|.++  +..+|.+++.+||.++.. +..|.||++.+++.+...+...      +     -.+|.
T Consensus       673 ~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  752 (861)
T d2bpta1         673 DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLE  752 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHH
T ss_pred             HhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHH
Confidence            88999999999999999876  456899999999999954 5557799999999999887631      2     24799


Q ss_pred             HHHHHHHHHHHHcC---CccchhhhHHHHHHH
Q 007670          221 AAAEALWRLAVVEK---DAVPEFKGKCLKIFE  249 (594)
Q Consensus       221 aAaDaLg~IA~a~g---d~f~py~~~~m~sLE  249 (594)
                      ++++++..|....+   +.+.||...+++.+.
T Consensus       753 ~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~  784 (861)
T d2bpta1         753 AVLDAYVGIVAGLHDKPEALFPYVGTIFQFIA  784 (861)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999988764   478899887775444

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-10  Score=128.21  Aligned_cols=238  Identities=14%  Similarity=0.166  Sum_probs=183.9

Q ss_pred             HHHHHhhcCCChh--HHHHHHHHHHHHHhh----cCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchH
Q 007670            8 SVNGLLNKLSDRD--TYSQAAKELDSIAAT----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT   81 (594)
Q Consensus         8 rvl~~L~KLsDrD--T~r~A~~eLD~LA~~----Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLp   81 (594)
                      .+-+.|.|+.|.|  =+.+|+..|-..-+.    ++.+...-+++.|.....++++.+|..|+++||.++... -.+.++
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~-~~~~~~   82 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-KEYQVE   82 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-cHhhHH
Confidence            4667889997666  455888777765432    345546677777777777888999999999999997644 235788


Q ss_pred             HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----hhH-----HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007670           82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----AFV-----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA  152 (594)
Q Consensus        82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~----~~~-----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l  152 (594)
                      .|+..++..+.+++..+|++++.+|..+...+...    .+.     .++..|..++....+..++..|..+|..++...
T Consensus        83 ~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~  162 (1207)
T d1u6gc_          83 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  162 (1207)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999887776432    111     245555555544567889999999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHH
Q 007670          153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       153 ~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-seDw~lRKaAaDaLg~IA~  231 (594)
                      +....++...+++.|...|+++...+|..++.+|+.++...+.  .++..+++.+...|. +..|..|..++.+|+.|+.
T Consensus       163 g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~  240 (1207)
T d1u6gc_         163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR  240 (1207)
T ss_dssp             CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            9888899999999999999999999999999999998755433  334445555555543 5678889999999999999


Q ss_pred             HcCCccchhhhHHHHHH
Q 007670          232 VEKDAVPEFKGKCLKIF  248 (594)
Q Consensus       232 a~gd~f~py~~~~m~sL  248 (594)
                      ..|..|.+|...++..+
T Consensus       241 ~~~~~~~~~l~~i~~~l  257 (1207)
T d1u6gc_         241 QAGHRIGEYLEKIIPLV  257 (1207)
T ss_dssp             HSSGGGTTSCTTHHHHH
T ss_pred             HcchhhHHHHHHHHHHH
Confidence            99999999988888644

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.8e-11  Score=118.34  Aligned_cols=110  Identities=15%  Similarity=0.207  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChh
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA   97 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~   97 (594)
                      .+..|...|+.++..++.+.++.+++.|.+..++++|.+|.+++++||.+++++   .+.||++.+++.|+..|+|+++.
T Consensus       343 ~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         343 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHH
Confidence            788899999999999987669999999999999999999999999999999876   78899999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcchh-HHhHHHHHHHHc
Q 007670           98 LQATCISTVSSLSPRVGASAF-VTMLKLLSDALF  130 (594)
Q Consensus        98 VR~Ac~~ALG~LAe~l~~~~~-~~~lkPL~eaL~  130 (594)
                      ||.||+++||++++++.+... ..++.||+..|+
T Consensus       423 VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             HHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            999999999999999965442 248999999886

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.9e-08  Score=107.03  Aligned_cols=234  Identities=13%  Similarity=0.156  Sum_probs=177.6

Q ss_pred             cCCChhH--HHHHHHHHHHHHhhcC-----CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-------------
Q 007670           15 KLSDRDT--YSQAAKELDSIAATVD-----PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-------------   74 (594)
Q Consensus        15 KLsDrDT--~r~A~~eLD~LA~~Lp-----pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-------------   74 (594)
                      -+.|.++  ...|+..|..+++.++     ...++.++..+..... +.+.++..+..++..+++.+             
T Consensus       416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~  494 (876)
T d1qgra_         416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEP  494 (876)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred             hhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456553  4567888888888764     2237888888877664 46788888888888887654             


Q ss_pred             ---ccccchHHHHHHHHhhhcCCC---hhHHHHHHHHHHhhchhhhcch-------------------------------
Q 007670           75 ---NLSPYITKIINSITRNFRDKN---SALQATCISTVSSLSPRVGASA-------------------------------  117 (594)
Q Consensus        75 ---~isphLpkIL~~IvrrLkD~D---s~VR~Ac~~ALG~LAe~l~~~~-------------------------------  117 (594)
                         .+.+|++.+++.+.+.+.+++   ..+|.+|..++..+.....+..                               
T Consensus       495 ~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  574 (876)
T d1qgra_         495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDR  574 (876)
T ss_dssp             CCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhh
Confidence               368899999999999998765   4688888888877654432100                               


Q ss_pred             ------------------------hHH-hHHHHHHHH---cc--CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 007670          118 ------------------------FVT-MLKLLSDAL---FT--EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL  167 (594)
Q Consensus       118 ------------------------~~~-~lkPL~eaL---~~--eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL  167 (594)
                                              ... +...++..+   +.  ..+..++..+..|+..++...++...+|++.+++-|
T Consensus       575 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l  654 (876)
T d1qgra_         575 IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL  654 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHH
Confidence                                    000 111122222   11  345678889999999999999988899999999999


Q ss_pred             HHHhcCC-chhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCccchhhhH
Q 007670          168 ERLLKSE-VFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGK  243 (594)
Q Consensus       168 ~klL~s~-~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~  243 (594)
                      .+.|++. ...++.+++.++|-++...+. +.||++.+++.|.+.|.++  ++.+|.+++.++|.|+...|+.|.||...
T Consensus       655 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~  734 (876)
T d1qgra_         655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEV  734 (876)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence            9999765 567889999999999866554 5699999999999999865  57899999999999999999999999999


Q ss_pred             HHHHHH
Q 007670          244 CLKIFE  249 (594)
Q Consensus       244 ~m~sLE  249 (594)
                      ++..|.
T Consensus       735 ~l~~l~  740 (876)
T d1qgra_         735 VLNTLQ  740 (876)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887554

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=8.5e-08  Score=104.49  Aligned_cols=245  Identities=9%  Similarity=0.075  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHhhhhc------CCCCCCcchHHHHHHHHHHHhhh-----------ccccchHHH
Q 007670           21 TYSQAAKELDSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNSH-----------NLSPYITKI   83 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~------~ss~kp~~RKaaI~lLGvlae~h-----------~isphLpkI   83 (594)
                      ..+.|...|..++...+...++.++..+.+.      ..+.++..|.+++.++|.++...           ...+..+-+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            4556667788888887665566666655443      24567889999999999986432           111222333


Q ss_pred             HHHHH---hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC------
Q 007670           84 INSIT---RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD------  154 (594)
Q Consensus        84 L~~Iv---rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~------  154 (594)
                      .+++.   ....++...+|..+++++|.++++...+-...++.-++..| .+++..|+..||.||..+++....      
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~V~~~a~~al~~~~~~~~~~~~~~~  535 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAF  535 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHhhcccccchh
Confidence            33333   34456677899999999999999985433445777777777 678899999999999999987542      


Q ss_pred             -----CcchhHHHHHHHHHHHhcCCchhh-----HHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhc---C--CcHHH
Q 007670          155 -----PDAGKLGRMEVRLERLLKSEVFKA-----KAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLS---S--QDWAA  218 (594)
Q Consensus       155 -----~i~~yL~~L~~RL~klL~s~~fka-----K~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~---s--eDw~l  218 (594)
                           ...||++.++..++.++.......     ...++.+|+.++...++ ..||++.+++.|...+.   .  .+-..
T Consensus       536 ~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  615 (959)
T d1wa5c_         536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF  615 (959)
T ss_dssp             SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             hccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence                 245899999999999986553221     24588899998866544 46999999999888763   2  24667


Q ss_pred             HHHHHHHHHHHHHHcC-CccchhhhHHHHHHH----hcchh---HHHHHHhhcCCC
Q 007670          219 RKAAAEALWRLAVVEK-DAVPEFKGKCLKIFE----SKRFD---KMIEAWKQVPDL  266 (594)
Q Consensus       219 RKaAaDaLg~IA~a~g-d~f~py~~~~m~sLE----s~RfD---K~i~lWk~i~~v  266 (594)
                      +..+.++|+.+....+ +.+..+...++..+.    ....|   .++++|..+-..
T Consensus       616 ~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~  671 (959)
T d1wa5c_         616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (959)
T ss_dssp             HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence            7888999999998765 566666655554433    22222   299999887654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=9.8e-08  Score=88.76  Aligned_cols=157  Identities=10%  Similarity=0.043  Sum_probs=111.3

Q ss_pred             hhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHH
Q 007670           48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSD  127 (594)
Q Consensus        48 L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~e  127 (594)
                      |.+.+.+++|.+|..|+..||.+..        +..++.+++.|+|+|+.||.+|+.+|+.+....  ......+..|+.
T Consensus        24 L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~--~~~~~~~~~l~~   93 (276)
T d1oyza_          24 LFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCEDNVFNILNN   93 (276)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccccchHHHHHH
Confidence            3345557899999999999987742        577899999999999999999999999986543  222235667777


Q ss_pred             HHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHH
Q 007670          128 ALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCL  207 (594)
Q Consensus       128 aL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L  207 (594)
                      .++.+.++.+...|+.+|..++....    .+.+.+++.+...++.+...++.+++.+++.+-.         +..++.+
T Consensus        94 ~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~---------~~~~~~l  160 (276)
T d1oyza_          94 MALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---------KATIPLL  160 (276)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCHHHH
T ss_pred             HHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch---------HHHHHHH
Confidence            77788999999999999999876432    3567888899999998888877766665553211         1112334


Q ss_pred             HhhhcCCcHHHHHHHHHHHH
Q 007670          208 LGFLSSQDWAARKAAAEALW  227 (594)
Q Consensus       208 ~e~L~seDw~lRKaAaDaLg  227 (594)
                      ...+...+|..|..+..+++
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~  180 (276)
T d1oyza_         161 INLLKDPNGDVRNWAAFAIN  180 (276)
T ss_dssp             HHHHTCSSHHHHHHHHHHHH
T ss_pred             HHhcccccchhhhhHHHHHH
Confidence            44444455555555444444

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.8e-07  Score=88.13  Aligned_cols=171  Identities=17%  Similarity=0.212  Sum_probs=126.0

Q ss_pred             ChhHHHHHHHHHHHHHhhcC------CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHHHHH
Q 007670           18 DRDTYSQAAKELDSIAATVD------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI   87 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lp------pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL~~I   87 (594)
                      |.+....|+..|..++.+.+      .-. +++++.++.   .++++.+|..++.+||.++... .....+  ..++|.+
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll---~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL---EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT---TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            44577777888888876543      112 677776554   3577899999999999999765 222221  3567888


Q ss_pred             Hhhh-cCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH
Q 007670           88 TRNF-RDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR  162 (594)
Q Consensus        88 vrrL-kD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~  162 (594)
                      ++.| .|+++.||..|+.|++.++..-....  +.  ..+++|+..| ...+..+|..|+.+|..++...++....+...
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            8888 47889999999999999987763221  11  1578888888 67789999999999999988644332223222


Q ss_pred             -HHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670          163 -MEVRLERLLKSEVFKAKAAGLVVVGSVIGS  192 (594)
Q Consensus       163 -L~~RL~klL~s~~fkaK~alL~aIGSiA~a  192 (594)
                       .++.|+.+|++++..++..++.+++.++..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence             689999999999999999999999998843

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=2e-07  Score=92.17  Aligned_cols=209  Identities=14%  Similarity=0.205  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc--hHHHHHHHHhhhcCCC
Q 007670           23 SQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDKN   95 (594)
Q Consensus        23 r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph--LpkIL~~IvrrLkD~D   95 (594)
                      +.++..|..+...-++..    ...+++.+.....+.++..|..++.+|+.++... ...+.  -..+++.+++.+++++
T Consensus       164 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~  243 (434)
T d1q1sc_         164 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE  243 (434)
T ss_dssp             HHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccch
Confidence            344445555555433222    3345666666667788899999999999997654 11121  2346788888899999


Q ss_pred             hhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHH
Q 007670           96 SALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLER  169 (594)
Q Consensus        96 s~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~k  169 (594)
                      ..|+.+++.+++.++..-.+..  ..  .++++|+..| .+.++.++..|+.+|..+..+..+. ..++  ..+++.++.
T Consensus       244 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~li~  321 (434)
T d1q1sc_         244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVPFLVG  321 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHH
T ss_pred             hhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhh-cccchhhhHHHHHHHhhhccccchh-HHHHhhhhhHHHHHH
Confidence            9999999999999986543221  11  1677777777 6788999999999999998753221 2233  227789999


Q ss_pred             HhcCCchhhHHHHHHHHHHHHhcCcC-cCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670          170 LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVVE  233 (594)
Q Consensus       170 lL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~  233 (594)
                      +|.++++++|..++.+|+.++..+.. ...++-  .+++.|.++|.+.|+.++..++++|..|....
T Consensus       322 ~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         322 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998865432 111111  24788899999999999999999999998753

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.9e-07  Score=91.39  Aligned_cols=219  Identities=14%  Similarity=0.088  Sum_probs=158.7

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcC-------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccc
Q 007670            6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS   77 (594)
Q Consensus         6 k~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lp-------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~is   77 (594)
                      -..++..|.+-+|.+.++.|+..|-.|+.+-+       ...+|+++.+|.    ++++.+++.++.+|+.+|... ...
T Consensus        61 v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~----~~~~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhC----CCCHHHHHHHHHHHHHhhcccchhh
Confidence            34456666666788899999999988764321       222788888774    467789999999999998776 222


Q ss_pred             cc--hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670           78 PY--ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--FVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDA  151 (594)
Q Consensus        78 ph--LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~  151 (594)
                      ..  -...++.+++.|++++..++..++.+++.++..-....  +..  .+.+|+..|.......++..++.+|..+...
T Consensus       137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~  216 (529)
T d1jdha_         137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence            22  34567888999999999999999999999986542221  111  6788888885555677787888888776532


Q ss_pred             cCCCcchhHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670          152 AQDPDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL  229 (594)
Q Consensus       152 l~~~i~~yL~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I  229 (594)
                        +.....+-  ..++.|.++|.+++..++..++.++..++..... ......+++.|..+|.++|..+|..|+.+|+.+
T Consensus       217 --~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~-~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l  293 (529)
T d1jdha_         217 --SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  293 (529)
T ss_dssp             --TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             --ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc-hhhhhhcchhhhhhcccccHHHHHHHHHHHHhh
Confidence              22222222  2677889999999888877777777776643322 233467899999999999999999999999998


Q ss_pred             HH
Q 007670          230 AV  231 (594)
Q Consensus       230 A~  231 (594)
                      +.
T Consensus       294 ~~  295 (529)
T d1jdha_         294 TC  295 (529)
T ss_dssp             TT
T ss_pred             cc
Confidence            75

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=7.3e-07  Score=88.04  Aligned_cols=211  Identities=12%  Similarity=0.107  Sum_probs=148.9

Q ss_pred             ChhHHHHHHHHHHHHHhhcC---------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc--hHHHHH
Q 007670           18 DRDTYSQAAKELDSIAATVD---------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIIN   85 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lp---------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph--LpkIL~   85 (594)
                      |.+.+..|+..|..++..-.         ...+|+|+.+|..   ++++.+|+.+..+|+.+|.+. ...-.  =..+++
T Consensus        26 ~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~  102 (434)
T d1q1sc_          26 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP  102 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTC---GGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchh
Confidence            56677788888887754222         2237788887753   345678999999999998653 11111  235788


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCCh----hHHHHHHHHHHHHHhhcCCCc-
Q 007670           86 SITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDT----NAQVGAALCLAATIDAAQDPD-  156 (594)
Q Consensus        86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k----~vQ~~Aa~ALaavvE~l~~~i-  156 (594)
                      .++..|++++..|+..|+.+|+.++..-....  ..  ..+.+|+..|......    ..+..++.+|..+..+..... 
T Consensus       103 ~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (434)
T d1q1sc_         103 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP  182 (434)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCC
T ss_pred             hhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccch
Confidence            89999999999999999999999986542211  11  1677777777533222    334456677777777644332 


Q ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      ..+...+++.|..++++++..++..++.+++.++.......  -+...+++.|.+++.++++.++..|+.+|+.++.
T Consensus       183 ~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~  259 (434)
T d1q1sc_         183 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  259 (434)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHh
Confidence            45677899999999999998888888888888764433221  2233467888889999999999999999998875

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=1.7e-07  Score=96.13  Aligned_cols=208  Identities=20%  Similarity=0.282  Sum_probs=147.8

Q ss_pred             hhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHHHHH
Q 007670           19 RDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI   87 (594)
Q Consensus        19 rDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL~~I   87 (594)
                      .+-+.-|+..|-.|+..-+        ...++.|+..|.    +++...+..|+.+||.++... .....+  ..+++.+
T Consensus       134 ~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~----s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L  209 (503)
T d1wa5b_         134 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY----TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI  209 (503)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhc----CCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccc
Confidence            3345567777776665322        222666666655    456679999999999998765 222221  1356777


Q ss_pred             HhhhcCCChhHHHHHHHHHHhhchhhhcch-h-H--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-H
Q 007670           88 TRNFRDKNSALQATCISTVSSLSPRVGASA-F-V--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-R  162 (594)
Q Consensus        88 vrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~-~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~  162 (594)
                      ++.+.+++..++..+++++..|+.+-...+ + .  .+++.|...+ ...++.++..+|.||..++++.++....++. .
T Consensus       210 ~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  288 (503)
T d1wa5b_         210 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVR  288 (503)
T ss_dssp             HHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred             hhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhhhhhhhhh
Confidence            888999999999999999999987653222 1 1  1555565555 6778889999999999999864433322332 3


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc-h-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG-L-KGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       163 L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py-f-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      ++++++.+|++++..++..++.+||.++......... + ..+++.|...|.+.++.+|+.|+-+|+.++.
T Consensus       289 ~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~  359 (503)
T d1wa5b_         289 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  359 (503)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence            7889999999999999999999999988543332111 1 2468889999999999999999999999875

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.8e-07  Score=86.41  Aligned_cols=177  Identities=14%  Similarity=0.121  Sum_probs=129.6

Q ss_pred             CCcchHHHHHHHHHHHhhhcccc---chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHH
Q 007670           56 KPGVRKECIHVIATLSNSHNLSP---YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDA  128 (594)
Q Consensus        56 kp~~RKaaI~lLGvlae~h~isp---hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~ea  128 (594)
                      +...|..++..|..+++.--.+-   .+.-+.+.|...|+++++.||..++.+||.++.+-...  .+.  ..+++|+..
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            33679999999999986641111   23334445567888999999999999999999865321  111  278899988


Q ss_pred             HccCCChhHHHHHHHHHHHHHhhcCCCcch-hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-CchH-HHHH
Q 007670          129 LFTEQDTNAQVGAALCLAATIDAAQDPDAG-KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLK-GLVS  205 (594)
Q Consensus       129 L~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~-yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf~-~lm~  205 (594)
                      |..+.++.++..|+.||..++..-++.... +-...++-|.++|++++...+..++.+|+.++....... .+.. .+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            855678899999999999998653322111 112256778899999999988888999998875543332 2222 3689


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670          206 CLLGFLSSQDWAARKAAAEALWRLAVV  232 (594)
Q Consensus       206 ~L~e~L~seDw~lRKaAaDaLg~IA~a  232 (594)
                      .|...|.+++-.+|..|+.+|+.|+..
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999863

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=2.5e-06  Score=87.13  Aligned_cols=213  Identities=15%  Similarity=0.152  Sum_probs=154.1

Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHHHHHHhh
Q 007670           18 DRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRN   90 (594)
Q Consensus        18 DrDT~r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL~~Ivrr   90 (594)
                      +....+.|+..|-.++.+-++..    +..+++.|.....+.++..+..++.+|+.++...  .+...+ ..+++.++..
T Consensus       217 ~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  296 (503)
T d1wa5b_         217 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL  296 (503)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhc
Confidence            34477788888888887653322    3456677777777888999999999999998755  222222 2467888899


Q ss_pred             hcCCChhHHHHHHHHHHhhchhhhcchhH----HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHH
Q 007670           91 FRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEV  165 (594)
Q Consensus        91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~  165 (594)
                      |+.++..|+..++.+++.++..-.+....    .++..|...| ...++.++..++.||..++.+.++.....+ ..+++
T Consensus       297 l~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~  375 (503)
T d1wa5b_         297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP  375 (503)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             ccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccc
Confidence            99999999999999999998655322111    1555555544 677889999999999998764322221222 23778


Q ss_pred             HHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC---Cch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670          166 RLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG---SGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV  231 (594)
Q Consensus       166 RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~---pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~  231 (594)
                      .++.+|.+.++++|..++-+|+.++..+....   .++  ..+++.|.+.|...|..+..+++++|..|..
T Consensus       376 ~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         376 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999998885543221   222  2256888889999999999999999998864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.37  E-value=5.8e-08  Score=81.62  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             hcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 007670           91 FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL  170 (594)
Q Consensus        91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~kl  170 (594)
                      |+|+++.||.++.++||.+.+.        .+.+|+.+| .++++.++..|+.||..+..          +..++.|.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~~--------~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~   61 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGDE--------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKL   61 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSST--------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCHH--------HHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHHHHhh
Confidence            4566666666666666655432        234555555 45566666666665543211          2334555566


Q ss_pred             hcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 007670          171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALW  227 (594)
Q Consensus       171 L~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg  227 (594)
                      |++++..++.+++.++|-+   +      -+..++.|..+|.++++.+|.+|+.+|.
T Consensus        62 l~d~~~~VR~~a~~aL~~i---~------~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          62 LEDDSGFVRSGAARSLEQI---G------GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHCCTHHHHHHHHHHHHH---C------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hccchhHHHHHHHHHHHHh---C------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6666666666666666643   1      1355667777777777777777777664

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.8e-06  Score=86.15  Aligned_cols=240  Identities=13%  Similarity=0.096  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhcC---CChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHh
Q 007670            4 ALKTSVNGLLNKL---SDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN   72 (594)
Q Consensus         4 ~Lk~rvl~~L~KL---sDrDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae   72 (594)
                      ++..+.+..|.+|   .|....+.|+..|..|+.+-+        +.-++.++..|..   ..++..|+.++.+|..++.
T Consensus        13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~---~~~~~~~~~a~~~L~~l~~   89 (529)
T d1jdha_          13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSH   89 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcC---CCCHHHHHHHHHHHHHHhC
Confidence            4555556666655   344488999999999986521        2226677766654   2456789999999999975


Q ss_pred             hh----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHH
Q 007670           73 SH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALC  144 (594)
Q Consensus        73 ~h----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~A  144 (594)
                      ..    .+..+  ..+|.+++.|+++|+.|+..|+.+|+.++..-...  .+.  ..+++|+..| ...++.+|..|+.|
T Consensus        90 ~~~~~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~  166 (529)
T d1jdha_          90 HREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDC  166 (529)
T ss_dssp             SHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHH
T ss_pred             CchhHHHHHHC--CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHH
Confidence            44    22121  35899999999999999999999999998765321  111  1788888876 77889999999999


Q ss_pred             HHHHHhhcCCCcchhH-HHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHH
Q 007670          145 LAATIDAAQDPDAGKL-GRMEVRLERLLKSEV-FKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARK  220 (594)
Q Consensus       145 LaavvE~l~~~i~~yL-~~L~~RL~klL~s~~-fkaK~alL~aIGSiA~a~~~~~-pyf-~~lm~~L~e~L~seDw~lRK  220 (594)
                      |..+...-.+...... ....+.|..+|.+.. -..+..+..++.-++... +.. +.+ ...++.|...|.+.+..++.
T Consensus       167 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~  245 (529)
T d1jdha_         167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQ  245 (529)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCHHHHH
T ss_pred             HHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHhcccchhhhh
Confidence            9988764221111111 114566777775553 345555666666554322 211 111 23688899999999999999


Q ss_pred             HHHHHHHHHHHHcCC--ccchhhhHHHHHHHh
Q 007670          221 AAAEALWRLAVVEKD--AVPEFKGKCLKIFES  250 (594)
Q Consensus       221 aAaDaLg~IA~a~gd--~f~py~~~~m~sLEs  250 (594)
                      .|+-+|..++.....  ........+++.+++
T Consensus       246 ~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~  277 (529)
T d1jdha_         246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS  277 (529)
T ss_dssp             HHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC
T ss_pred             hhhhHHHhccccccchhhhhhcchhhhhhccc
Confidence            999999888765332  223334444455543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.7e-05  Score=73.22  Aligned_cols=120  Identities=12%  Similarity=0.114  Sum_probs=76.3

Q ss_pred             CCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHH-HHhhhc
Q 007670           16 LSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS-ITRNFR   92 (594)
Q Consensus        16 LsDrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~-IvrrLk   92 (594)
                      |.|.|  ....|+..|-.+.   +++.++.++.++.    ++++.+|..|+.+||.+......   .+.+++. +...++
T Consensus        28 L~d~~~~vR~~A~~~L~~~~---~~~~~~~l~~~l~----d~~~~vr~~a~~aL~~l~~~~~~---~~~~~~~l~~~~l~   97 (276)
T d1oyza_          28 LDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICKKC---EDNVFNILNNMALN   97 (276)
T ss_dssp             TTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHhhC---CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhcccccc---ccchHHHHHHHHhc
Confidence            44555  6777777776553   2223677766664    57789999999999988544322   2222322 333478


Q ss_pred             CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHH
Q 007670           93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAA  147 (594)
Q Consensus        93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaa  147 (594)
                      |+++.||.+++.+|+.++..... ....++..+...+ .+.++.++..|+.++..
T Consensus        98 d~~~~vr~~a~~aL~~~~~~~~~-~~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          98 DKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITA-FDKSTNVRRATAFAISV  150 (276)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHT
T ss_pred             CCChhHHHHHHHHHHHHccccch-hhHHHHHHHHHHh-cCcchHHHHHHHHHHhh
Confidence            99999999999999998875421 1112444444444 67778888777766544

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.23  E-value=3e-07  Score=77.14  Aligned_cols=108  Identities=11%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             CCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC
Q 007670           53 SSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE  132 (594)
Q Consensus        53 ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e  132 (594)
                      +++++.+|++++.+||.+..         +.++.+++.|+|+|+.||.+++.+||.+...-       .+++|...| .+
T Consensus         2 ~D~~~~VR~~A~~aL~~~~~---------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~~-------~~~~L~~~l-~d   64 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDER-------AVEPLIKLL-ED   64 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCSS---------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSHH-------HHHHHHHHH-HH
T ss_pred             CCcCHHHHHHHHHHHHHhCH---------HHHHHHHHHHcCCCHHHHHHHHHHHHhcchhh-------hHHHHHhhh-cc
Confidence            56788999999999886422         23456778999999999999999999876544       677777777 67


Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 007670          133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG  187 (594)
Q Consensus       133 q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIG  187 (594)
                      .++.|+..|+.||..+-.          +...+-|.+++++++..++.+++.++.
T Consensus        65 ~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             chhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            899999999999987632          356667788999998888888777653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=3.2e-05  Score=83.74  Aligned_cols=204  Identities=9%  Similarity=0.076  Sum_probs=138.0

Q ss_pred             hHHHHHhhhhcCCCCC---CcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc-
Q 007670           41 LPTFLSCILSTNSSDK---PGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-  116 (594)
Q Consensus        41 lp~fLs~L~e~~ss~k---p~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-  116 (594)
                      .+.|...+.+...+.+   +..|..++.++|..++. ...++++.+++.+++.|+|++..||..|+.|+..+.+..... 
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~  531 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNT  531 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccc
Confidence            4445555554443433   34555555555554432 456789999999999999999999999999999999866431 


Q ss_pred             ------------h-hHHhHHHHHHHHccCCChhH-----HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh----cCC
Q 007670          117 ------------A-FVTMLKLLSDALFTEQDTNA-----QVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL----KSE  174 (594)
Q Consensus       117 ------------~-~~~~lkPL~eaL~~eq~k~v-----Q~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL----~s~  174 (594)
                                  | +..++..|+..+. +.....     ......||..+++..++.+.+|...+++.|..++    +++
T Consensus       532 ~~~~~~~~~~l~p~l~~ll~~L~~~l~-~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~  610 (959)
T d1wa5c_         532 SPAFIFHKEDISNSTEILLKNLIALIL-KHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP  610 (959)
T ss_dssp             SCCBSSCGGGTTTTHHHHHHHHHHHHH-TTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC
T ss_pred             cchhhccHHHHHhhHHHHHHHHHHHHH-hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence                        1 1124555555553 222222     2347788999999999999999998888887766    333


Q ss_pred             -chhhHHHHHHHHHHHHhcCc-Cc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---CccchhhhHHHH
Q 007670          175 -VFKAKAAGLVVVGSVIGSGA-VD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLK  246 (594)
Q Consensus       175 -~fkaK~alL~aIGSiA~a~~-~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g---d~f~py~~~~m~  246 (594)
                       .......++.+|+.++...+ +. ..+...++|.+...+..+.....-.+.+.+..+....+   +.+.++...++.
T Consensus       611 ~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~  688 (959)
T d1wa5c_         611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLA  688 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTS
T ss_pred             cchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhh
Confidence             45566678889999887643 32 35566778888888876655556678888888877643   455555555553

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00016  Score=68.73  Aligned_cols=146  Identities=13%  Similarity=0.026  Sum_probs=97.9

Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670           84 INSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK  159 (594)
Q Consensus        84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y  159 (594)
                      ||.+++.|+.+|+.|+..++.+|+.||..-.+.  .+..  .++||+..| .++++.+|..|+.||..+...-++ ....
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~-~~~~   81 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTT-NKLE   81 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH-HHHH
Confidence            789999999999999999999999999543221  1222  689999887 788999999999999999742111 1112


Q ss_pred             HHH--HHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh----------------cCCcHHHHH
Q 007670          160 LGR--MEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL----------------SSQDWAARK  220 (594)
Q Consensus       160 L~~--L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L----------------~seDw~lRK  220 (594)
                      +..  .++.|++++.+. +..++..++.+++.++.........+...++.+...+                ...+..++.
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            222  356788888654 6667888888888887643322122222222222221                234677888


Q ss_pred             HHHHHHHHHHH
Q 007670          221 AAAEALWRLAV  231 (594)
Q Consensus       221 aAaDaLg~IA~  231 (594)
                      .|+.+|..++.
T Consensus       162 ~a~~~l~~~~~  172 (457)
T d1xm9a1         162 NATGCLRNLSS  172 (457)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            88888877764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.0002  Score=68.15  Aligned_cols=108  Identities=11%  Similarity=0.023  Sum_probs=83.4

Q ss_pred             hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchH--HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc-
Q 007670           41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-  116 (594)
Q Consensus        41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLp--kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-  116 (594)
                      ||.++..|.    +++|.+|.++...|+.+|.+. -....+-  ..+|.+++.|++++..||.+|+.+|+.|+..-.+. 
T Consensus         4 ip~lv~~L~----~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           4 IPKAVQYLS----SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             HHHHHHHHH----SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhC----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            778888876    578999999999999998665 2223333  34788889999999999999999999998543211 


Q ss_pred             -hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007670          117 -AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA  152 (594)
Q Consensus       117 -~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l  152 (594)
                       ...  ..+.+|+..+....++.++..|+.+|..+.+..
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~  118 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh
Confidence             111  157888888866678899999999999998853

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.77  E-value=0.027  Score=56.00  Aligned_cols=212  Identities=12%  Similarity=0.089  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------ccccchHHHHHHHHhhhc
Q 007670           21 TYSQAAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSPYITKIINSITRNFR   92 (594)
Q Consensus        21 T~r~A~~eLD~LA~~Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------~isphLpkIL~~IvrrLk   92 (594)
                      +..-|.+.|-.++...-|..  +..++..+.......++..|+.+++.||.++.-+      .-..+++.+...+.+.+.
T Consensus       103 s~~ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~  182 (336)
T d1lsha1         103 TSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD  182 (336)
T ss_dssp             CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc
Confidence            33445666667776654444  5566655543333357889999999999996665      223467778888888888


Q ss_pred             CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc------CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 007670           93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR  166 (594)
Q Consensus        93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~------eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~R  166 (594)
                      ..|..-..+++.|||.+...-       .++.|...+.+      +....+...|..||.++....       -..+-+-
T Consensus       183 ~~~~~~~~~~LkaLGN~g~p~-------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-------p~~v~~~  248 (336)
T d1lsha1         183 RAKEEEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-------PRKVQEI  248 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-------HHHHHHH
T ss_pred             ccchHHHHHHHHHHhccCCHh-------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC-------cHHHHHH
Confidence            888888899999999987543       34444444433      224567788888887765431       1223333


Q ss_pred             HHHHhcCC--chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcCCccchhhhH
Q 007670          167 LERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEKDAVPEFKGK  243 (594)
Q Consensus       167 L~klL~s~--~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~gd~f~py~~~  243 (594)
                      +..++.+.  +..++.+++.++=   ..    .|. ...+..|..+|.. .+.+++....-.|-.++..-.+.....+.-
T Consensus       249 l~~i~~n~~e~~EvRiaA~~~lm---~t----~P~-~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~~~la~~  320 (336)
T d1lsha1         249 VLPIFLNVAIKSELRIRSCIVFF---ES----KPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAA  320 (336)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHH---HT----CCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHH
T ss_pred             HHHHHcCCCCChHHHHHHHHHHH---hc----CCC-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            44454444  5667766554432   11    254 3577888888864 589999999999999888655556655444


Q ss_pred             HHHHHH--hcchh
Q 007670          244 CLKIFE--SKRFD  254 (594)
Q Consensus       244 ~m~sLE--s~RfD  254 (594)
                      |=.++.  +.|||
T Consensus       321 a~~a~~ll~p~~~  333 (336)
T d1lsha1         321 CSVAIKMLGSKLD  333 (336)
T ss_dssp             HHHHHTTSCSGGG
T ss_pred             HHHHHHHhCcccc
Confidence            433333  44554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.91  E-value=0.0073  Score=57.62  Aligned_cols=23  Identities=39%  Similarity=0.522  Sum_probs=17.6

Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHH
Q 007670          205 SCLLGFLSSQDWAARKAAAEALW  227 (594)
Q Consensus       205 ~~L~e~L~seDw~lRKaAaDaLg  227 (594)
                      +.|..++.+++|.+|.++++.++
T Consensus       189 ~~L~~l~~D~d~~VR~aaae~~~  211 (233)
T d1lrva_         189 DDLLELLHDPDWTVRLAAVEHAS  211 (233)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCCHHHHHHHHHhcc
Confidence            45667778899999999887643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.28  E-value=0.016  Score=55.25  Aligned_cols=44  Identities=9%  Similarity=0.081  Sum_probs=28.5

Q ss_pred             hhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 007670           49 LSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVS  107 (594)
Q Consensus        49 ~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG  107 (594)
                      .++..+|.+.+|..+.        .|.-       +..+.+.++|+|+.||.+++..|+
T Consensus        48 ~~~l~~p~~e~Ra~Aa--------~~a~-------~~~L~~Ll~D~d~~VR~~AA~~Lp   91 (233)
T d1lrva_          48 VQYLADPFWERRAIAV--------RYSP-------VEALTPLIRDSDEVVRRAVAYRLP   91 (233)
T ss_dssp             GGGTTCSSHHHHHHHH--------TTSC-------GGGGGGGTTCSSHHHHHHHHTTSC
T ss_pred             HHHhcCCcHHHHHHHH--------hcCC-------HHHHHHHhcCCCHHHHHHHHHHcC
Confidence            4567777766774432        2311       124556789999999999987654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.11  E-value=0.69  Score=45.36  Aligned_cols=202  Identities=14%  Similarity=0.106  Sum_probs=121.0

Q ss_pred             HHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHH
Q 007670           26 AKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIST  105 (594)
Q Consensus        26 ~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~A  105 (594)
                      +-.|-.+.+.++.++|..+...+..     ++..|+--+-+++.+...-        -+.++...+...+-..-+|.. .
T Consensus        45 F~~Lv~~lR~~~~e~l~~v~~~~~~-----~~~~r~~~lDal~~~GT~~--------a~~~i~~~I~~~~ls~~ea~~-~  110 (336)
T d1lsha1          45 FLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMATSE--------ALLFLKRTLASEQLTSAEATQ-I  110 (336)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCSHH--------HHHHHHHHHHTTCSCHHHHHH-H
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhc-----ChhHHHHHHHHHHHhCCHH--------HHHHHHHHHHcCCCCHHHHHH-H
Confidence            3355556666777667666666532     3446665555555443222        123445555555544444433 3


Q ss_pred             HHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHhcCCchhh
Q 007670          106 VSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAA----QDPDAGKLGRMEVRLERLLKSEVFKA  178 (594)
Q Consensus       106 LG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l----~~~i~~yL~~L~~RL~klL~s~~fka  178 (594)
                      +..++... . |...+++-+++.+.   ..+++.+...+.+++.++|-..    ++-..++++.+...+.+.++..+..-
T Consensus       111 l~~l~~~~-~-Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  188 (336)
T d1lsha1         111 VASTLSNQ-Q-ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEE  188 (336)
T ss_dssp             HHHHHHTC-C-CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccC-C-CCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHH
Confidence            44444332 2 32234444444442   1246778789999999988774    22225678888888889998888877


Q ss_pred             HHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC-------CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhc
Q 007670          179 KAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS-------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK  251 (594)
Q Consensus       179 K~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~s-------eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~  251 (594)
                      +...|-+||   .+|      .+.+++.|..|+.+       ..-.+|.+|+.+|..++......+   ..-++.++.+.
T Consensus       189 ~~~~LkaLG---N~g------~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v---~~~l~~i~~n~  256 (336)
T d1lsha1         189 IVLALKALG---NAG------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV---QEIVLPIFLNV  256 (336)
T ss_dssp             HHHHHHHHH---HHT------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH---HHHHHHHHHCT
T ss_pred             HHHHHHHHh---ccC------CHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH---HHHHHHHHcCC
Confidence            777777777   444      14567777777753       257899999999998865422122   23345677777


Q ss_pred             chhH
Q 007670          252 RFDK  255 (594)
Q Consensus       252 RfDK  255 (594)
                      ..|-
T Consensus       257 ~e~~  260 (336)
T d1lsha1         257 AIKS  260 (336)
T ss_dssp             TSCH
T ss_pred             CCCh
Confidence            7666