Citrus Sinensis ID: 007705

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
MGEGLGLQKMMKATASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKVEKSMKMEAILEESTKAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDEWKVRGETIPINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQKFCGLTKRRRIDLDWDRKKAREAGLPDQHWRINVTDPRRSESHLID
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHcccccEEEEEEccccccccEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccEEccEEEEEcccHHHHcccccccccccccccccccccccccccccHHHHHcccccccEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEccccccccccccccccccccEEEEcccccccEEEEEcccHHHHHccccccccccccccccccccccccEEEEcccHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccc
ccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccHEEEcccHHccccccccccccccccccccccccHccccHHHHHHHHHHccccEEEEEEEcccHHHHHccccccEEEEEcccccccccHHHcccHHccHHHccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHccccEEEEEcccHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEEEcccccHccccccEEEEEEEEEEEEEEccEEEEEEHHHHHHHHHHHHHcccccccccccccEEcccEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccEEEccccHHHHHHHHHcccccccccEEEEEEccccccEEEcccccccccccccccccHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccc
MGEGLGLQKMMKATASKALVIRMNLVFLAFFFIIYVGlflqpsssiyfeNAASLVRCSLRECHHKVEKSMKMEAILEEStkakpkrlnvskieVPSFMNAMGKGVKIGmvnmdefdtdewkvrgetipinfepvseyfkwqdlfpewideeeesdipscpeipmpnfriydnMDVIVAKlpcrypeegwgrdVFRLQVHLIVANLAVKkgkrdwkwrTKVVFWskcrpmlemfrcddLVRQEGEFWWYYQPVIARLeqkvslpvgscklalplwgqgvdevydlSRIKSATKIAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIdnsisipkrEALTAAGWKIRIIKRirnpraekktyneynyskfrlwqltdydkiifiDADIIVLRNldllfhfpqmsatgndiwifnsgimviepsnctFRILMSKRKEIvsynggdqgfLNEVYVWWHRLPRRVNFLKNFWANTTLEASvknhlfgadppklYAIHYlglkpwacyrdydcnwdignqrvyaSDVAHERWWKLHDSMDDKLQKFCGLTKRRRIDLDWDRkkareaglpdqhwrinvtdprrseshlid
MGEGLGLQKMMKATASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKVEKSMKMEAILeestkakpkrlnvskievpsfmnaMGKGVKIGMVNMDEFDTDEWKVRGETIpinfepvseyFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANlavkkgkrdwkwrtkvvfwskcrpmlemFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAITLAQSlrktgtkrDLVLlidnsisipkrealtaagwkiriikrirnpraekktyneynyskfrlWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQkfcgltkrrridldwdrkkareaglpdqhwrinvtdprrseshlid
MGEGLGLQKMMKATASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKVEKSMKMEAILEESTKAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDEWKVRGETIPINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWkiriikrirNPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQKFCGLTKRRRIDLDWDRKKAREAGLPDQHWRINVTDPRRSESHLID
**************ASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKV*************************IEVPSFMNAMGKGVKIGMVNMDEFDTDEWKVRGETIPINFEPVSEYFKWQDLFPEWIDEE****IPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQKFCGLTKRRRIDLDWDRK**********HWRI**************
**************ASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLR********************KAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDEWKVRGETIPINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGV****************K*EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDK************************************************
**********MKATASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKVEKSMKMEAILEESTKAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDEWKVRGETIPINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQKFCGLTKRRRIDLDWDRKKAREAGLPDQHWRINVTD**********
******LQKMMKATASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKVEKSMKMEAILEESTKAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDEWKVRGETIPINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDL********IAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQKFCGLTKRRRIDLDWDRKKAREAGLPDQHWRINVTDPRRSE*****
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGEGLGLQKMMKATASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKVEKSMKMEAILEESTKAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDEWKVRGETIPINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQKFCGLTKRRRIDLDWDRKKAREAGLPDQHWRINVTDPRRSESHLID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query592 2.2.26 [Sep-21-2011]
Q8GWW4596 UDP-glucuronate:xylan alp yes no 0.969 0.963 0.671 0.0
Q9LSB1659 UDP-glucuronate:xylan alp no no 0.807 0.725 0.488 1e-138
Q8W4A7618 Putative UDP-glucuronate: no no 0.780 0.747 0.474 1e-135
Q9FZ37557 Putative UDP-glucuronate: no no 0.787 0.836 0.487 1e-134
F4HZC3566 Putative UDP-glucuronate: no no 0.800 0.837 0.476 1e-130
Q8GWB7 537 Putative glucuronosyltran no no 0.277 0.305 0.375 5e-27
O15488 501 Glycogenin-2 OS=Homo sapi yes no 0.415 0.491 0.302 2e-21
P46976350 Glycogenin-1 OS=Homo sapi no no 0.349 0.591 0.307 7e-20
P13280333 Glycogenin-1 OS=Oryctolag yes no 0.349 0.621 0.307 3e-19
Q9R062333 Glycogenin-1 OS=Mus muscu yes no 0.346 0.615 0.304 6e-19
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function desciption
 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/585 (67%), Positives = 479/585 (81%), Gaps = 11/585 (1%)

Query: 16  SKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLRECHHKVEKSMKMEAI 75
           SK+ +IR NLV L F F++Y  +F  PSSS+YF + AS V CS R+C  KV + +KM+ +
Sbjct: 13  SKSALIRFNLVLLGFSFLLYTAIFFHPSSSVYFSSGASFVGCSFRDCTPKVVRGVKMQEL 72

Query: 76  LEESTKAKPKRL---NVSKIEVPSFMN-----AMGKGVKIGMVNMDEFDTDEWKVRGETI 127
           +EE+   K   L   N +K+E PSFM       +GK  KIGMVNM+E D   WK  GET+
Sbjct: 73  VEENEINKKDLLTASNQTKLEAPSFMEEILTRGLGK-TKIGMVNMEECDLTNWKRYGETV 131

Query: 128 PINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAKLPCRYPEE 187
            I+FE VS+ FKWQDLFPEWIDEEEE+++P+CPEIPMP+F   + +D++V KLPC YPEE
Sbjct: 132 HIHFERVSKLFKWQDLFPEWIDEEEETEVPTCPEIPMPDFESLEKLDLVVVKLPCNYPEE 191

Query: 188 GWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWW 247
           GW R+V RLQV+L+ ANLA KKGK DW+W++KV+FWSKC+PM+E+FRCDDL ++E + WW
Sbjct: 192 GWRREVLRLQVNLVAANLAAKKGKTDWRWKSKVLFWSKCQPMIEIFRCDDLEKREAD-WW 250

Query: 248 YYQPVIARLEQKVSLPVGSCKLALPLWG-QGVDEVYDLSRIKSATKIAKREAYATVLHSS 306
            Y+P + RL+Q++SLPVGSC LALPLW  QGVD+VYDL++I++ TK  KREAY TVLHSS
Sbjct: 251 LYRPEVVRLQQRLSLPVGSCNLALPLWAPQGVDKVYDLTKIEAETKRPKREAYVTVLHSS 310

Query: 307 EAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKK 366
           E+YVCGAITLAQSL +T TKRDL+LL D+SISI K  AL AAGWK+R I RIRNP AEK 
Sbjct: 311 ESYVCGAITLAQSLLQTNTKRDLILLHDDSISITKLRALAAAGWKLRRIIRIRNPLAEKD 370

Query: 367 TYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVI 426
           +YNEYNYSKFRLWQLTDYDK+IFIDADIIVLRNLDLLFHFPQMSATGND+WI+NSGIMVI
Sbjct: 371 SYNEYNYSKFRLWQLTDYDKVIFIDADIIVLRNLDLLFHFPQMSATGNDVWIYNSGIMVI 430

Query: 427 EPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEASVKN 486
           EPSNCTF  +MS+R EIVSYNGGDQG+LNE++VWWHRLPRRVNFLKNFW+NTT E ++KN
Sbjct: 431 EPSNCTFTTIMSQRSEIVSYNGGDQGYLNEIFVWWHRLPRRVNFLKNFWSNTTKERNIKN 490

Query: 487 HLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQ 546
           +LF A+PP++YA+HYLG KPW CYRDYDCN+D+  Q VYASD AH RWWK+HDSMDD LQ
Sbjct: 491 NLFAAEPPQVYAVHYLGWKPWLCYRDYDCNYDVDEQLVYASDAAHVRWWKVHDSMDDALQ 550

Query: 547 KFCGLTKRRRIDLDWDRKKAREAGLPDQHWRINVTDPRRSESHLI 591
           KFC LTK+RR +++W+R+KAR  G  D HW+INVTDPRR  S+LI
Sbjct: 551 KFCRLTKKRRTEINWERRKARLRGSTDYHWKINVTDPRRRRSYLI 595
Glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls. In association with GUX1, is responsible for almost all of the substitutions of the xylan backbone in stem glucuronoxylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4A7|GUX3_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function description
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function description
>sp|O15488|GLYG2_HUMAN Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2 Back     alignment and function description
>sp|P46976|GLYG_HUMAN Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4 Back     alignment and function description
>sp|P13280|GLYG_RABIT Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R062|GLYG_MOUSE Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
255538316589 glycogenin, putative [Ricinus communis] 0.993 0.998 0.758 0.0
356552204594 PREDICTED: uncharacterized protein LOC10 0.989 0.986 0.730 0.0
356562281592 PREDICTED: uncharacterized protein LOC10 0.986 0.986 0.728 0.0
225458601590 PREDICTED: uncharacterized protein LOC10 0.983 0.986 0.738 0.0
357437843596 Glycogenin glucosyltransferase [Medicago 0.988 0.981 0.728 0.0
449466344592 PREDICTED: LOW QUALITY PROTEIN: UDP-gluc 0.981 0.981 0.714 0.0
449522612592 PREDICTED: LOW QUALITY PROTEIN: UDP-gluc 0.981 0.981 0.712 0.0
356509734595 PREDICTED: uncharacterized protein LOC10 0.991 0.986 0.688 0.0
79495718596 plant glycogenin-like starch initiation 0.969 0.963 0.671 0.0
297798604596 hypothetical protein ARALYDRAFT_328405 [ 0.969 0.963 0.671 0.0
>gi|255538316|ref|XP_002510223.1| glycogenin, putative [Ricinus communis] gi|223550924|gb|EEF52410.1| glycogenin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/592 (75%), Positives = 528/592 (89%), Gaps = 4/592 (0%)

Query: 1   MGEGLGLQKMMKATASKALVIRMNLVFLAFFFIIYVGLFLQPSSSIYFENAASLVRCSLR 60
           M  G  LQK++K T SKALVIR+NLVFLAFF +IY  L L+PSSS+YF+NAASLVRCSLR
Sbjct: 1   MAHGFSLQKIVKTTPSKALVIRINLVFLAFFLVIYASLLLRPSSSVYFDNAASLVRCSLR 60

Query: 61  ECHHKVEKSMKMEAILEEST-KAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDE 119
           ECHHK+E  +KM+A+LEES    +  R N++KIE+PSFM  +GKG+KI MVNM+E D  +
Sbjct: 61  ECHHKMENGVKMKAVLEESQPDTRKPRGNMTKIEMPSFMKEIGKGMKIAMVNMEENDVSD 120

Query: 120 WKVRGETIPINFEPVSEYFKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDNMDVIVAK 179
           WK+ GETIPI+FE VSEYFKW+DLFPEWIDEEEE +  SCPEIPMP+F+ YD+MDVIVAK
Sbjct: 121 WKIHGETIPIHFERVSEYFKWEDLFPEWIDEEEEFEGTSCPEIPMPDFKAYDDMDVIVAK 180

Query: 180 LPCRYPEEGWGRDVFRLQVHLIVANLAVKKGKRDWKWRTKVVFWSKCRPMLEMFRCDDLV 239
           LPC+YP+E W R+V RLQVHL+ ANLA+KKG+RDW W+TKVVFWSKCRPMLE+FRCDDLV
Sbjct: 181 LPCKYPQELWNREVLRLQVHLVAANLAMKKGRRDWSWKTKVVFWSKCRPMLELFRCDDLV 240

Query: 240 RQEGEFWWYYQPVIARLEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAY 299
           +QEG+ WW+Y+P ++ L QK+SLPVGSCKL+LPLW QG++ ++DLS+I+S TK +KREAY
Sbjct: 241 KQEGD-WWFYEPEMSILGQKLSLPVGSCKLSLPLWAQGINNIFDLSKIESTTKTSKREAY 299

Query: 300 ATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIR 359
           ATVLHSSE+YVCGAI LAQSLR++GTKRDL++L+D SIS  KREAL AAGWKIR+IKRIR
Sbjct: 300 ATVLHSSESYVCGAIALAQSLRQSGTKRDLIILLDKSISESKREALAAAGWKIRLIKRIR 359

Query: 360 NPRAEKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIF 419
           NPRAEK +YNEYNYSKFRLWQLTDYDKIIFID+DIIVLRNLD+LFHFPQMSATGNDIWIF
Sbjct: 360 NPRAEKDSYNEYNYSKFRLWQLTDYDKIIFIDSDIIVLRNLDILFHFPQMSATGNDIWIF 419

Query: 420 NSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTT 479
           NSGIMVIEPSNCTF+ LM +RK+I+SYNGGDQGFLNEV+VWWHRLPRRVNFLKNFWANTT
Sbjct: 420 NSGIMVIEPSNCTFKFLMDRRKDIISYNGGDQGFLNEVFVWWHRLPRRVNFLKNFWANTT 479

Query: 480 LEASVKNHLFGADPPKLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHD 539
           LEA VKN LFGADPPK+Y+IHYLGLKPW CYRDYDCNW+IG+QRVYASDVAH+RWWK HD
Sbjct: 480 LEAGVKNELFGADPPKVYSIHYLGLKPWNCYRDYDCNWNIGDQRVYASDVAHKRWWKFHD 539

Query: 540 SMDDKLQKFCGLTKRRRIDLDWDRKKAREAGLPDQHWRINVTDPRRSESHLI 591
            MD+KLQKFCGLTK+R+I+LDW+R+ AR+ G  D+HW+IN+TDPRR   HLI
Sbjct: 540 GMDEKLQKFCGLTKQRKIELDWERRVARQTGFLDEHWKINITDPRR--KHLI 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356552204|ref|XP_003544459.1| PREDICTED: uncharacterized protein LOC100780684 [Glycine max] Back     alignment and taxonomy information
>gi|356562281|ref|XP_003549400.1| PREDICTED: uncharacterized protein LOC100795248 [Glycine max] Back     alignment and taxonomy information
>gi|225458601|ref|XP_002282762.1| PREDICTED: uncharacterized protein LOC100266116 [Vitis vinifera] gi|302142323|emb|CBI19526.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357437843|ref|XP_003589197.1| Glycogenin glucosyltransferase [Medicago truncatula] gi|355478245|gb|AES59448.1| Glycogenin glucosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449466344|ref|XP_004150886.1| PREDICTED: LOW QUALITY PROTEIN: UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449522612|ref|XP_004168320.1| PREDICTED: LOW QUALITY PROTEIN: UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356509734|ref|XP_003523601.1| PREDICTED: uncharacterized protein LOC100812365 [Glycine max] Back     alignment and taxonomy information
>gi|79495718|ref|NP_195059.3| plant glycogenin-like starch initiation protein 3 [Arabidopsis thaliana] gi|75151077|sp|Q8GWW4.1|GUX2_ARATH RecName: Full=UDP-glucuronate:xylan alpha-glucuronosyltransferase 2; Short=UDP-GlcA:xylan glucuronyltransferase 2; AltName: Full=Glycogenin-like protein 2; AltName: Full=Plant glycogenin-like starch initiation protein 3; AltName: Full=Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 2; Short=AtGUX2 gi|26452208|dbj|BAC43192.1| unknown protein [Arabidopsis thaliana] gi|29028960|gb|AAO64859.1| At4g33330 [Arabidopsis thaliana] gi|51969834|dbj|BAD43609.1| putative protein [Arabidopsis thaliana] gi|51970144|dbj|BAD43764.1| putative protein [Arabidopsis thaliana] gi|332660807|gb|AEE86207.1| plant glycogenin-like starch initiation protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798604|ref|XP_002867186.1| hypothetical protein ARALYDRAFT_328405 [Arabidopsis lyrata subsp. lyrata] gi|297313022|gb|EFH43445.1| hypothetical protein ARALYDRAFT_328405 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
TAIR|locus:2094014659 PGSIP1 "plant glycogenin-like 0.810 0.728 0.480 1.2e-129
TAIR|locus:2196020618 PGSIP2 "plant glycogenin-like 0.778 0.745 0.465 4.3e-125
TAIR|locus:2011045557 PGSIP4 "AT1G54940" [Arabidopsi 0.783 0.833 0.481 2.7e-123
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.800 0.837 0.464 3.5e-123
WB|WBGene00012020300 gyg-2 [Caenorhabditis elegans 0.349 0.69 0.348 1e-24
WB|WBGene00006863 429 gyg-1 [Caenorhabditis elegans 0.346 0.477 0.363 6.4e-24
TAIR|locus:2146173 537 PGSIP6 "plant glycogenin-like 0.359 0.396 0.337 8.2e-24
UNIPROTKB|F6QLM5331 GYG1 "Uncharacterized protein" 0.427 0.764 0.309 2.4e-21
UNIPROTKB|F1SKC4331 GYG1 "Uncharacterized protein" 0.422 0.755 0.305 2.4e-21
UNIPROTKB|E1BYL9332 E1BYL9 "Uncharacterized protei 0.413 0.737 0.301 5e-21
TAIR|locus:2094014 PGSIP1 "plant glycogenin-like starch initiation protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 245/510 (48%), Positives = 335/510 (65%)

Query:    87 LNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDEW------KVRGE---TIPINFEPVSEY 137
             L+++  +V   +  + +G  IG++N D  +   W      K  G+    + +N +   + 
Sbjct:   119 LDINWDDVTKTLENIEEGRTIGVLNFDSNEIQRWREVSKSKDNGDEEKVVVLNLDYADKN 178

Query:   138 FKWQDLFPEWIDEEEESDIPSCPEIPMPNFRIYDN-MDVIVAKLPCRYPEEGWGRDVFRL 196
               W  L+PEWIDEE+E+++P CP IP  N ++    +D+IV KLPCR  E  W RDV RL
Sbjct:   179 VTWDALYPEWIDEEQETEVPVCPNIP--NIKVPTRRLDLIVVKLPCR-KEGNWSRDVGRL 235

Query:   197 QVHLIVANLAVK-KGKRDWKWRTKVVFWSKCRPMLEMFRCDDLVRQEGEFWWYYQPVIAR 255
              + L  A +A   KG     +R  V F S+C P+  +FRC DLV + G+ W  Y+P +  
Sbjct:   236 HLQLAAATVAASAKGF----FRGHVFFVSRCFPIPNLFRCKDLVSRRGDVW-LYKPNLDT 290

Query:   256 LEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAIT 315
             L  K+ LPVGSC+L+LPL   G+ +   L          KREAYAT+LHS+  YVCGAI 
Sbjct:   291 LRDKLQLPVGSCELSLPL---GIQDRPSLGN-------PKREAYATILHSAHVYVCGAIA 340

Query:   316 LAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXXXXXNPRAEKKTYNEYNYSK 375
              AQS+R++G+ RDLV+L+D++IS   R  L AAGW         NP+AEK  YNE+NYSK
Sbjct:   341 AAQSIRQSGSTRDLVILVDDNISGYHRSGLEAAGWQIRTIQRIRNPKAEKDAYNEWNYSK 400

Query:   376 FRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDIWIFNSGIMVIEPSNCTFRI 435
             FRLWQLTDYDKIIFIDAD+++LRN+D LF  P++SATGN+  +FNSG+MVIEP NCTF++
Sbjct:   401 FRLWQLTDYDKIIFIDADLLILRNIDFLFSMPEISATGNNGTLFNSGVMVIEPCNCTFQL 460

Query:   436 LMSKRKEIVSYNGGDQGFLNEVYVWWHRLPRRVNFLKNFWANTTLEAS-VKNHLFGADPP 494
             LM    EI SYNGGDQG+LNEV+ WWHR+P+ +NFLK+FW     +A   K  LFGA+PP
Sbjct:   461 LMEHINEIESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWIGDEDDAKRKKTELFGAEPP 520

Query:   495 KLYAIHYLGLKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDDKLQKFCGLTKR 554
              LY +HYLG+KPW CYRDYDCN++      +A+D+AH +WW +HD+M  +L +FC L  +
Sbjct:   521 VLYVLHYLGMKPWLCYRDYDCNFNSDIFVEFATDIAHRKWWMVHDAMPQELHQFCYLRSK 580

Query:   555 RRIDLDWDRKKAREAGLPDQHWRINVTDPR 584
             ++  L++DR++A  A   D HW+I V DPR
Sbjct:   581 QKAQLEYDRRQAEAANYADGHWKIRVKDPR 610
GO:0005634 "nucleus" evidence=ISM
GO:0005982 "starch metabolic process" evidence=IMP
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0010417 "glucuronoxylan biosynthetic process" evidence=IMP
GO:0080116 "glucuronoxylan glucuronosyltransferase activity" evidence=IMP
GO:0009834 "secondary cell wall biogenesis" evidence=IGI
GO:0015020 "glucuronosyltransferase activity" evidence=IDA
GO:0045492 "xylan biosynthetic process" evidence=IGI;RCA;IDA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
TAIR|locus:2196020 PGSIP2 "plant glycogenin-like starch initiation protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011045 PGSIP4 "AT1G54940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00012020 gyg-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00006863 gyg-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2146173 PGSIP6 "plant glycogenin-like starch initiation protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F6QLM5 GYG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKC4 GYG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYL9 E1BYL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GWW4GUX2_ARATH2, ., 4, ., 1, ., -0.67170.96950.9630yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014811001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (590 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 2e-75
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 2e-40
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 2e-18
PLN00176333 PLN00176, PLN00176, galactinol synthase 2e-15
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 2e-11
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 4e-10
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 2e-08
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 6e-04
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  239 bits (612), Expect = 2e-75
 Identities = 88/255 (34%), Positives = 135/255 (52%), Gaps = 25/255 (9%)

Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIK 356
           EAY T+L + + Y+ GA+ L  SLRK G+  DLV+L+   +S   REAL   GW +R ++
Sbjct: 1   EAYVTLLTNDD-YLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVE 59

Query: 357 RIRNPRAEKK---TYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFP-QMSAT 412
            I  P +         +  Y+K RLW LT+YDK++F+DAD +VLRN+D LF  P + +A 
Sbjct: 60  PIDPPDSANLLKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAA 119

Query: 413 GNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVW---WHRLPRR 467
            +  W  +FNSG+ V++PS  TF  L+   ++  S++GGDQG LN  +     W RLP  
Sbjct: 120 PDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLLNSYFSDRGIWKRLPFT 179

Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPWACYRDYDCNWDIGNQRVYA 526
            N LK                      ++  +H++G  KPW+ +RD +            
Sbjct: 180 YNALKPLRYLHPEA--------LWFGDEIKVVHFIGGDKPWSWWRDPETKE------KDD 225

Query: 527 SDVAHERWWKLHDSM 541
            +  H+ WW ++D +
Sbjct: 226 YNELHQWWWDIYDEL 240

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 592
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.98
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.97
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.97
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.96
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.95
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.95
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.94
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 99.93
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.88
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.87
PLN02523559 galacturonosyltransferase 99.87
PLN02718603 Probable galacturonosyltransferase 99.84
PLN02867535 Probable galacturonosyltransferase 99.83
PLN02769629 Probable galacturonosyltransferase 99.82
PLN02870533 Probable galacturonosyltransferase 99.8
PLN02659534 Probable galacturonosyltransferase 99.78
PLN02829639 Probable galacturonosyltransferase 99.78
PLN02742534 Probable galacturonosyltransferase 99.77
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.75
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.66
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.0
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.59
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 94.97
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 93.94
PLN03181453 glycosyltransferase; Provisional 92.99
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 92.06
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 90.49
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=3.1e-46  Score=391.18  Aligned_cols=236  Identities=28%  Similarity=0.497  Sum_probs=196.2

Q ss_pred             CCCCCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCCEEEEEeeccCcccccc---cC
Q 007705          292 KIAKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKK---TY  368 (592)
Q Consensus       292 ~~~~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~ns~~dLvVLvtd~ise~~r~~L~~~g~~Ii~V~~i~~p~~~~~---~~  368 (592)
                      ..++++||||+|++|++|++||++|++||++++++++++|+++++++++.++.|++.|+.++.|+++.++.....   .+
T Consensus        18 ~~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~   97 (333)
T PLN00176         18 AKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAY   97 (333)
T ss_pred             cccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccch
Confidence            447799999999999999999999999999999999999999999999999999999999999998875543322   12


Q ss_pred             CccceeeeecccccCcceEEEEecCeeeccCchhhhCCCC--ceeecCC-------------------------------
Q 007705          369 NEYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQ--MSATGND-------------------------------  415 (592)
Q Consensus       369 ~~~tytKL~iw~LtdYDRVLYLDaD~LVl~nIDeLFdlp~--iaAvpD~-------------------------------  415 (592)
                      ...+|+||++|++++||||||||+|+||++|||+||+++.  ++|+.|.                               
T Consensus        98 ~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g  177 (333)
T PLN00176         98 YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELG  177 (333)
T ss_pred             hhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhcc
Confidence            3458999999999999999999999999999999999974  6665441                               


Q ss_pred             ---CcceeceEEEEeCCHHHHHHHHHHHHcCCCCCCCCcchHHhhcc-ceeecCCcccccccccccchhhhhhcccccCC
Q 007705          416 ---IWIFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYV-WWHRLPRRVNFLKNFWANTTLEASVKNHLFGA  491 (592)
Q Consensus       416 ---~~yFNSGVMVInPs~~~fe~Lle~~~e~~sy~~~DQdiLN~vF~-~w~~LP~rYN~l~~~~~~~~~~~~~~~~~~~~  491 (592)
                         ..|||||||||+|+.++|++|++.+.....+.++|||+||.+|. +|++||.+||++..+...       +.+.+. 
T Consensus       178 ~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~-------~~~~~~-  249 (333)
T PLN00176        178 PPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWR-------HPENVE-  249 (333)
T ss_pred             CCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhh-------Chhhcc-
Confidence               13999999999999999999999987766678899999999999 899999999998654211       222233 


Q ss_pred             CCCCcEEEEecC--CCCCCccCCCCCcccCCCCcccCCchhHHHHHHHHHHHH
Q 007705          492 DPPKLYAIHYLG--LKPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMD  542 (592)
Q Consensus       492 ~~~~~kIIHF~G--~KPW~~~~~~dcnw~~~~~~~~asd~~~~~WW~vyd~~~  542 (592)
                       .++++||||+|  .|||+.. +..+|++.++.     ..++++||.+|++..
T Consensus       250 -~~~vkIIHY~~~~~KPW~~~-~~~~~~~~~~~-----~~~~~~Ww~~~~~~~  295 (333)
T PLN00176        250 -LDKVKVVHYCAAGSKPWRYT-GKEENMDREDI-----KMLVKKWWDIYNDES  295 (333)
T ss_pred             -cCCcEEEEeeCCCCCCCCCC-CcccCCChHHH-----HHHHHHHHHHhcccc
Confidence             56899999996  5999854 45667655332     357899999999654

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 2e-19
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 2e-19
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 3e-19
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 3e-19
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 4e-19
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 5e-19
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 5e-19
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 5e-19
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 5e-19
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 6e-19
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 7e-19
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 8e-19
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 1e-18
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 3e-18
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure 
Iteration: 1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
           +A+ T L +++AY  GA+ L  SL++  T R L +L    +S   R+AL           
Sbjct: 24  QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
              +  +   T  +        +K   W LT Y K +F+DAD +VL N+D LF   ++SA
Sbjct: 83  ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
             +  W   FNSG+ V +PS  T+  L+    E  S+NGGDQG LN  +  W    + + 
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
           + F+ N  + +          FGA+      +H+LG  KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 3e-56
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 7e-56
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 1e-12
3tzt_A276 Glycosyl transferase family 8; structural genomics 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
 Score =  189 bits (481), Expect = 3e-56
 Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 20/260 (7%)

Query: 296 REAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRII 355
            +A+ T L +++AY  GA+ L  SL++  T R LV+L    +S   R+ L     ++ ++
Sbjct: 4   DQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMV 62

Query: 356 KRIRNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMS 410
             + +  +   T  +        +K   W LT Y K +F+DAD +VL N+D LF   ++S
Sbjct: 63  DVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELS 122

Query: 411 ATGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRLP--R 466
           A  +  W   FNSG+ V +PS  T+  L+    E  S++GGDQG LN  +  W      +
Sbjct: 123 AAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRK 182

Query: 467 RVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPWACYRDYDCNWDIGNQRVY 525
            + F+ N  + +         +FGA       +H+LG +KPW     YD          +
Sbjct: 183 HLPFIYNLSSISIYSYLPAFKVFGASA---KVVHFLGRVKPW--NYTYDPKTKSVKSEAH 237

Query: 526 ASDVAHER----WWKLHDSM 541
             ++ H      WW +  + 
Sbjct: 238 DPNMTHPEFLILWWNIFTTN 257
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.96
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-45  Score=382.88  Aligned_cols=270  Identities=29%  Similarity=0.421  Sum_probs=193.1

Q ss_pred             CCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCCEEEEEeeccCccccc-----ccCC
Q 007705          295 KREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEK-----KTYN  369 (592)
Q Consensus       295 ~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~ns~~dLvVLvtd~ise~~r~~L~~~g~~Ii~V~~i~~p~~~~-----~~~~  369 (592)
                      +++||||+. +|++|++++.|+++||++++++++++||++++++++.++.|++.+.+++.|+.+..+....     ....
T Consensus         2 s~~a~vt~~-~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~   80 (333)
T 1ll2_A            2 TDQAFVTLT-TNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (333)
T ss_dssp             CSEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CceEEEEEE-eCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccch
Confidence            579999975 6899999999999999999999999999999999999999999999999998776543211     1223


Q ss_pred             ccceeeeecccccCcceEEEEecCeeeccCchhhhCCCCceeecCCC--cceeceEEEEeCCHHHHHHHHHHHHcCCCCC
Q 007705          370 EYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDI--WIFNSGIMVIEPSNCTFRILMSKRKEIVSYN  447 (592)
Q Consensus       370 ~~tytKL~iw~LtdYDRVLYLDaD~LVl~nIDeLFdlp~iaAvpD~~--~yFNSGVMVInPs~~~fe~Lle~~~e~~sy~  447 (592)
                      ..+|+||++|++++||||||||+|+||++|||+||+++.++|++|.+  .||||||||+||+..+++++++.+.+.+++.
T Consensus        81 ~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~~~~~~~l~~~~~~~~~~~  160 (333)
T 1ll2_A           81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD  160 (333)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence            46899999999999999999999999999999999999999999875  5999999999999999999999998878889


Q ss_pred             CCCcchHHhhccce------eecCCcccccccccccchhhhhhcccccCCCCCCcEEEEecC-CCCCCccCCCCCcccCC
Q 007705          448 GGDQGFLNEVYVWW------HRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPWACYRDYDCNWDIG  520 (592)
Q Consensus       448 ~~DQdiLN~vF~~w------~~LP~rYN~l~~~~~~~~~~~~~~~~~~~~~~~~~kIIHF~G-~KPW~~~~~~dcnw~~~  520 (592)
                      ++|||+||.+|.+|      ..||.+||++.+..+..       .+.+.....+++||||+| .|||......      .
T Consensus       161 ~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~-------~p~~~~~~~~~~IiHf~g~~KPW~~~~~~------~  227 (333)
T 1ll2_A          161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY-------LPAFKAFGANAKVVHFLGQTKPWNYTYDT------K  227 (333)
T ss_dssp             SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHT-------HHHHHHHGGGCSEEECCSSCCGGGSCEET------T
T ss_pred             CCCHHHHHHHHHhhcccCccccCCcHHhcccccchhc-------cHHHHhhcCCCEEEEECCCCCCCCCCCCC------C
Confidence            99999999999977      79999999986531110       001112246799999999 5999875321      1


Q ss_pred             CCccc-C-------CchhHHHHHHHHHHH-HHHHhhhc------C---------------C----CcccccCcHHHHHHH
Q 007705          521 NQRVY-A-------SDVAHERWWKLHDSM-DDKLQKFC------G---------------L----TKRRRIDLDWDRKKA  566 (592)
Q Consensus       521 ~~~~~-a-------sd~~~~~WW~vyd~~-~e~l~~~c------~---------------l----~~~~~~~~~~~R~~a  566 (592)
                      ....+ +       .+.++++||++|++. ...++..|      +               +    +..+.+...++||+|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (333)
T 1ll2_A          228 TKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERKER  307 (333)
T ss_dssp             TTEEC--------CCHHHHHHHHHHHHHTHHHHHTC--------------------------------------------
T ss_pred             ccccccccccccccHHHHHHHHHHHHHhhcccccchhhccCCCCCccchhhhhhhhhccccccccCccCCCCCcHHHHHH
Confidence            11111 0       246789999999954 34444333      1               0    111223368899999


Q ss_pred             HHcCCCCcccee
Q 007705          567 REAGLPDQHWRI  578 (592)
Q Consensus       567 ~~~~~~d~h~~~  578 (592)
                      ||.|+.||.|+-
T Consensus       308 we~g~~dy~g~d  319 (333)
T 1ll2_A          308 WEQGQADYMGAD  319 (333)
T ss_dssp             ------------
T ss_pred             HhccCCccccch
Confidence            999999999974
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 592
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 1e-48
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 8e-17
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  168 bits (425), Expect = 1e-48
 Identities = 71/257 (27%), Positives = 114/257 (44%), Gaps = 16/257 (6%)

Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIK 356
           +A+ T L +++AY  GA+ L  SL++  T R L +L    +S   R+AL     ++  + 
Sbjct: 4   QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62

Query: 357 RIRNPRAEKKTYNEYN-----YSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
            + +  +   T  +        +K   W LT Y K +F+DAD +VL N+D LF   ++SA
Sbjct: 63  ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122

Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHRL--PRR 467
             +  W   FNSG+ V +PS  T+  L+    E  S++GGDQG LN  +  W      + 
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182

Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPWACYRDYDCNWDIGNQRVYA 526
           + F+ N  + +          FGA+      +H+LG  KPW    D              
Sbjct: 183 LPFIYNLSSISIYSYLPAFKAFGANA---KVVHFLGQTKPWNYTYDTKTKSVRSEGHDPT 239

Query: 527 SDVA--HERWWKLHDSM 541
                    WW +  + 
Sbjct: 240 MTHPQFLNVWWDIFTTS 256
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.97
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 80.03
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.7e-40  Score=328.39  Aligned_cols=238  Identities=28%  Similarity=0.411  Sum_probs=189.5

Q ss_pred             CCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCCEEEEEeeccCccccc-----ccCC
Q 007705          295 KREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEK-----KTYN  369 (592)
Q Consensus       295 ~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~ns~~dLvVLvtd~ise~~r~~L~~~g~~Ii~V~~i~~p~~~~-----~~~~  369 (592)
                      +..||||++ +|++|++||+|+++||++++++++++||++++++++.++.|++.+..++.++.+..+....     ....
T Consensus         2 ~~~A~vt~~-t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVTLT-TNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEEEE-eCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            458999976 5899999999999999999999999999999999999999999999999998876543321     2345


Q ss_pred             ccceeeeecccccCcceEEEEecCeeeccCchhhhCCCCceeecCCC--cceeceEEEEeCCHHHHHHHHHHHHcCCCCC
Q 007705          370 EYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDI--WIFNSGIMVIEPSNCTFRILMSKRKEIVSYN  447 (592)
Q Consensus       370 ~~tytKL~iw~LtdYDRVLYLDaD~LVl~nIDeLFdlp~iaAvpD~~--~yFNSGVMVInPs~~~fe~Lle~~~e~~sy~  447 (592)
                      ..+|+||++|++++||||||||||+||++|||+||+.+.++|+++.+  .+||||||+++|+.++++.|.+.+.+...+.
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~  160 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD  160 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCC
Confidence            57899999999999999999999999999999999999999998854  6999999999999999999999998888888


Q ss_pred             CCCcchHHhhcc------ceeecCCcccccccccccchhhhhhcccccCCCCCCcEEEEecC-CCCCCccCCCCCcccCC
Q 007705          448 GGDQGFLNEVYV------WWHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPWACYRDYDCNWDIG  520 (592)
Q Consensus       448 ~~DQdiLN~vF~------~w~~LP~rYN~l~~~~~~~~~~~~~~~~~~~~~~~~~kIIHF~G-~KPW~~~~~~dcnw~~~  520 (592)
                      ++||+++|..|.      .|..||..||+........       ...+.....+++||||+| .|||+......  +...
T Consensus       161 ~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~iIHf~g~~KPW~~~~~~~--~~~~  231 (263)
T d1ll2a_         161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY-------LPAFKAFGANAKVVHFLGQTKPWNYTYDTK--TKSV  231 (263)
T ss_dssp             SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHT-------HHHHHHHGGGCSEEECCSSCCGGGSCEETT--TTEE
T ss_pred             hhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhh-------hHhHHhhcCCeEEEEeCCCCCCCCCCCCCC--cccc
Confidence            999999999986      4778888888765431000       001112246789999999 59998653211  1111


Q ss_pred             CCccc----CCchhHHHHHHHHHHHH
Q 007705          521 NQRVY----ASDVAHERWWKLHDSMD  542 (592)
Q Consensus       521 ~~~~~----asd~~~~~WW~vyd~~~  542 (592)
                      .....    ....++++||++|++.-
T Consensus       232 ~~~~~~~~~~~~~l~~~Ww~~~~~~~  257 (263)
T d1ll2a_         232 RSEGHDPTMTHPQFLNVWWDIFTTSV  257 (263)
T ss_dssp             C--------CCHHHHHHHHHHHHHTH
T ss_pred             ccchhhccccHHHHHHHHHHHHhccc
Confidence            11110    12467999999999754
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure