Citrus Sinensis ID: 007717

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHHVMSSLSLAPSA
cccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHcccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccHHHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccccEEEEEEEccccccccHHHHHHHHccccccEEEEEEEccccccHHcccHHHHHHHcccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccHHHHHHccccccccccccccccccccccccEccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEHccccHHHHHHHHccccccccHHHcccccccccccccccccHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MQHREFIILCLEdcsdwsnatTRRVVMQIDPELKRTIIVSTKldtkipqfarasdvevflsppactldgfilggspfftsvpsgrvgtghdsvyssneEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRymdsvpmiIPLLEKEYCSTTRKLNEINKELstldevklkekgrvFHDLFLTKLSLLLkgtvvappdkfgetlqneringgafvgtdglqfphklipnagmrlygGAQYHRAMAEFRFMvggikcppitrEEIVNAcgvedihdgtnysrTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSfgsteqsavlsnslsmplcqessfvsvanekhdtkprtdvklsqvasgvdssssvqtTETRLADLLDntlwnrrlapssERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLEsafegdldnvfditnlrhslsqqksDTEIEMKRIKKLKEKFKLIHEQFISHHvmsslslapsa
MQHREFIILCLedcsdwsnattrrvvmqidpelkRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEklgrslskqersrigvskLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEInkelstldevklkekGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANekhdtkprtdvklsqvasgvdssssvqttetrLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNlrhslsqqksdteiEMKRIKKLKEKFKLIHEQFishhvmsslslapsa
MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDlfltklslllKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLsqvasgvdssssvQTTETRLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTeiemkrikklkekfkliHEQFISHHVMSSLSLAPSA
****EFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTS************************FI**************************VSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSF************************************************************LADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLR******************KLKEKFKLIHEQFISHH***********
**HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYS*NEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYC********************LKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQK*****SGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNK********************************************************************************************IVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLR********************KEKFKLIHE*****************
MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK************IGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVA*****************************TETRLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHHVMS********
**HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFG******************************************************TTETRLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHHV**********
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MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHHVMSSLSLAPSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query591 2.2.26 [Sep-21-2011]
Q84N64777 Dynamin-like protein ARC5 yes no 0.988 0.751 0.784 0.0
Q55AX0904 Dynamin-like protein C OS yes no 0.842 0.550 0.268 2e-41
Q55F94880 Dynamin-like protein A OS no no 0.805 0.540 0.233 2e-37
F4HPR5817 Dynamin-related protein 5 no no 0.629 0.455 0.271 7e-31
Q54MH8808 Dynamin-like protein B OS no no 0.478 0.350 0.261 1e-17
>sp|Q84N64|ARC5_ARATH Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2 Back     alignment and function desciption
 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/590 (78%), Positives = 520/590 (88%), Gaps = 6/590 (1%)

Query: 1   MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60
           MQH+EFIILCLED SDWS ATTRR+VMQ+DPEL RTI+VSTKLDTKIPQF+ +SDVEVFL
Sbjct: 191 MQHKEFIILCLEDSSDWSIATTRRIVMQVDPELSRTIVVSTKLDTKIPQFSCSSDVEVFL 250

Query: 61  SPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLG 120
           SPPA  LD  +LG SPFFTSVPSGRVG G DSVY SN+EFKQA+ +REMEDI SLE+KLG
Sbjct: 251 SPPASALDSSLLGDSPFFTSVPSGRVGYGQDSVYKSNDEFKQAVSLREMEDIASLEKKLG 310

Query: 121 RSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTL 180
           R L+KQE+SRIG+SKLR FLEELL KRY +SVP+IIPLL KEY ST RKL+ ++KELS+L
Sbjct: 311 RLLTKQEKSRIGISKLRLFLEELLWKRYKESVPLIIPLLGKEYRSTVRKLDTVSKELSSL 370

Query: 181 DEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHK 240
           DE KLKE+GR FHDLFLTKLSLLLKGTVVAPPDKFGETLQ+ER  GGAFVGTDGLQF HK
Sbjct: 371 DEAKLKERGRTFHDLFLTKLSLLLKGTVVAPPDKFGETLQDERTQGGAFVGTDGLQFSHK 430

Query: 241 LIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACV 300
           LIPNAGMRLYGGAQYHRAMAEFRF+VG IKCPPITREEIVNACGVEDIHDGTNYSRTACV
Sbjct: 431 LIPNAGMRLYGGAQYHRAMAEFRFLVGAIKCPPITREEIVNACGVEDIHDGTNYSRTACV 490

Query: 301 IAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNF 360
           IAVAKAR+TFEPFLHQLG RLLHILKRLLPIS+YLLQKEGEYLSGHEVFL+RVASAFN+F
Sbjct: 491 IAVAKARETFEPFLHQLGARLLHILKRLLPISVYLLQKEGEYLSGHEVFLKRVASAFNSF 550

Query: 361 AESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLC 420
            ESTE++CR+KCMEDL STTRYVTWSLHNKNRAGLRQFLDSFG TE +    N++   L 
Sbjct: 551 VESTEKSCRDKCMEDLASTTRYVTWSLHNKNRAGLRQFLDSFGGTEHNTTSGNAIGFSLP 610

Query: 421 QESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNTLWNRRLAPSS 480
           Q++          DTK R+DVKLS +AS +DS SS+QTTE RLADLLD+TLWNR+LAPSS
Sbjct: 611 QDA-----LGGTTDTKSRSDVKLSHLASNIDSGSSIQTTEMRLADLLDSTLWNRKLAPSS 665

Query: 481 ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFD 540
           ERIVYALVQQIF GIREYFLASAELKFNCFLLMP+VDKLPALLRE+LE+AFE DLD++FD
Sbjct: 666 ERIVYALVQQIFQGIREYFLASAELKFNCFLLMPIVDKLPALLREELENAFEDDLDSIFD 725

Query: 541 ITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHHVMSSLSLAPS 590
           ITNLR SL Q+K  TEIE++RIK++KEKF++++E+  SH    +L  APS
Sbjct: 726 ITNLRQSLDQKKRSTEIELRRIKRIKEKFRVMNEKLNSHEFAQNLK-APS 774
Probable GTPase component of both plastid and peroxisme division machinery. Required for the last steps of plastid division specifically in mesophyll-cell, when the narrow isthmus breaks, facilitating the separation of the daughter plastids. Necessary for peroxisome activities. Seems to influence stromule (stroma-filled tubular extensions of the plastid envelope membrane) length and frequency.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: 5
>sp|Q55AX0|DLPC_DICDI Dynamin-like protein C OS=Dictyostelium discoideum GN=dlpC PE=2 SV=2 Back     alignment and function description
>sp|Q55F94|DLPA_DICDI Dynamin-like protein A OS=Dictyostelium discoideum GN=dlpA PE=2 SV=1 Back     alignment and function description
>sp|F4HPR5|DRP5A_ARATH Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1 Back     alignment and function description
>sp|Q54MH8|DLPB_DICDI Dynamin-like protein B OS=Dictyostelium discoideum GN=dlpB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
225447799 773 PREDICTED: dynamin-like protein ARC5 [Vi 0.989 0.756 0.878 0.0
255575398 765 GTP binding protein, putative [Ricinus c 0.974 0.752 0.868 0.0
347596005 762 ARC5 protein [Manihot esculenta] 0.981 0.761 0.867 0.0
356524868 751 PREDICTED: dynamin-like protein ARC5-lik 0.976 0.768 0.828 0.0
449438153 771 PREDICTED: dynamin-like protein ARC5-lik 0.976 0.748 0.833 0.0
296081485672 unnamed protein product [Vitis vinifera] 0.920 0.809 0.835 0.0
147860502 802 hypothetical protein VITISV_016438 [Viti 0.989 0.729 0.755 0.0
42565028 777 protein ARC5 [Arabidopsis thaliana] gi|3 0.988 0.751 0.784 0.0
297834888 774 hypothetical protein ARALYDRAFT_479490 [ 0.988 0.754 0.784 0.0
30349146 777 dynamin-like protein [Arabidopsis thalia 0.988 0.751 0.781 0.0
>gi|225447799|ref|XP_002266729.1| PREDICTED: dynamin-like protein ARC5 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1053 bits (2722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/585 (87%), Positives = 545/585 (93%)

Query: 1   MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60
           MQH+EFIILCLEDCSDWSNATTRRVVMQIDPEL RT+IVSTKLDTKIPQFARASDVEVFL
Sbjct: 182 MQHKEFIILCLEDCSDWSNATTRRVVMQIDPELSRTVIVSTKLDTKIPQFARASDVEVFL 241

Query: 61  SPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLG 120
           SPPACTLDGFILG SPFFTSVPSGRVG+G +S+Y SN+EFKQAI +REMEDI SLEEKLG
Sbjct: 242 SPPACTLDGFILGDSPFFTSVPSGRVGSGPESIYRSNDEFKQAILLREMEDIASLEEKLG 301

Query: 121 RSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTL 180
           R LS+QERSRIGVSKLR FLEELLQKRYMDSVP+IIPLLEKEY  TTRKLN++N+ELSTL
Sbjct: 302 RLLSEQERSRIGVSKLRLFLEELLQKRYMDSVPLIIPLLEKEYRGTTRKLNDLNRELSTL 361

Query: 181 DEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHK 240
           DE KLKEKGR FHDLFLTKLSLLLKGTVVAPP+KFGETLQ+ER+NGGAFVGTDGLQFP K
Sbjct: 362 DEAKLKEKGRTFHDLFLTKLSLLLKGTVVAPPEKFGETLQDERVNGGAFVGTDGLQFPQK 421

Query: 241 LIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACV 300
           LIPNAGMRLYGGAQYHRAMAEFRF+VGGIKCPPITREEIVNACGVEDIHDGTNYSRTACV
Sbjct: 422 LIPNAGMRLYGGAQYHRAMAEFRFVVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACV 481

Query: 301 IAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNF 360
           IAVAKARDTFEPFLHQLGCRLLHILKRLLPIS++LLQK+GEYLSGHEVFLRRVASAFNNF
Sbjct: 482 IAVAKARDTFEPFLHQLGCRLLHILKRLLPISVFLLQKDGEYLSGHEVFLRRVASAFNNF 541

Query: 361 AESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLC 420
           AESTER C EKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFG TEQSA   NS+S  L 
Sbjct: 542 AESTERECHEKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGGTEQSAASGNSISAGLA 601

Query: 421 QESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNTLWNRRLAPSS 480
           QESSF SV N+K D KP+ DVKLS +ASG+DS++  QTTETRLADLLDNTLWNRRLAPSS
Sbjct: 602 QESSFGSVTNDKQDIKPKADVKLSHLASGIDSATCAQTTETRLADLLDNTLWNRRLAPSS 661

Query: 481 ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFD 540
           ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFE DLDNVFD
Sbjct: 662 ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEDDLDNVFD 721

Query: 541 ITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHHVMSSL 585
           ITNLRHSL  +K DTEIE+KRI++LKEKF+ IHEQ   H VMS L
Sbjct: 722 ITNLRHSLGVRKRDTEIELKRIQRLKEKFRQIHEQLCLHQVMSKL 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575398|ref|XP_002528601.1| GTP binding protein, putative [Ricinus communis] gi|223531946|gb|EEF33759.1| GTP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|347596005|gb|AEP13980.1| ARC5 protein [Manihot esculenta] Back     alignment and taxonomy information
>gi|356524868|ref|XP_003531050.1| PREDICTED: dynamin-like protein ARC5-like [Glycine max] Back     alignment and taxonomy information
>gi|449438153|ref|XP_004136854.1| PREDICTED: dynamin-like protein ARC5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296081485|emb|CBI20008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147860502|emb|CAN83976.1| hypothetical protein VITISV_016438 [Vitis vinifera] Back     alignment and taxonomy information
>gi|42565028|ref|NP_188606.2| protein ARC5 [Arabidopsis thaliana] gi|327507753|sp|Q84N64.2|ARC5_ARATH RecName: Full=Dynamin-like protein ARC5; AltName: Full=Dynamin-related protein 5B; AltName: Full=Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 5 gi|332642758|gb|AEE76279.1| protein ARC5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834888|ref|XP_002885326.1| hypothetical protein ARALYDRAFT_479490 [Arabidopsis lyrata subsp. lyrata] gi|297331166|gb|EFH61585.1| hypothetical protein ARALYDRAFT_479490 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30349146|gb|AAO89221.1| dynamin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
TAIR|locus:2091226777 ARC5 "ACCUMULATION AND REPLICA 0.988 0.751 0.738 6.8e-230
DICTYBASE|DDB_G0268592893 dlpA "dynamin like protein" [D 0.692 0.458 0.271 5.7e-31
TAIR|locus:2037026817 DRP5A "Dynamin related protein 0.705 0.510 0.263 7.3e-30
DICTYBASE|DDB_G0271628904 dlpC "dynamin like protein" [D 0.516 0.337 0.302 8.8e-28
DICTYBASE|DDB_G0285931808 dlpB "dynamin like protein" [D 0.490 0.358 0.245 1.7e-17
TAIR|locus:2091226 ARC5 "ACCUMULATION AND REPLICATION OF CHLOROPLAST 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2218 (785.8 bits), Expect = 6.8e-230, P = 6.8e-230
 Identities = 436/590 (73%), Positives = 483/590 (81%)

Query:     1 MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60
             MQH+EFIILCLED SDWS ATTRR+VMQ+DPEL RTI+VSTKLDTKIPQF+ +SDVEVFL
Sbjct:   191 MQHKEFIILCLEDSSDWSIATTRRIVMQVDPELSRTIVVSTKLDTKIPQFSCSSDVEVFL 250

Query:    61 SPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLG 120
             SPPA  LD  +LG SPFFTSVPSGRVG G DSVY SN+EFKQA+ +REMEDI SLE+KLG
Sbjct:   251 SPPASALDSSLLGDSPFFTSVPSGRVGYGQDSVYKSNDEFKQAVSLREMEDIASLEKKLG 310

Query:   121 RSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTL 180
             R L+KQE+SRIG+SKLR FLEELL KRY +SVP+IIPLL KEY ST RKL+ ++KELS+L
Sbjct:   311 RLLTKQEKSRIGISKLRLFLEELLWKRYKESVPLIIPLLGKEYRSTVRKLDTVSKELSSL 370

Query:   181 DEVKLKEKGRVFHDXXXXXXXXXXKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHK 240
             DE KLKE+GR FHD          KGTVVAPPDKFGETLQ+ER  GGAFVGTDGLQF HK
Sbjct:   371 DEAKLKERGRTFHDLFLTKLSLLLKGTVVAPPDKFGETLQDERTQGGAFVGTDGLQFSHK 430

Query:   241 LIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACV 300
             LIPNAGMRLYGGAQYHRAMAEFRF+VG IKCPPITREEIVNACGVEDIHDGTNYSRTACV
Sbjct:   431 LIPNAGMRLYGGAQYHRAMAEFRFLVGAIKCPPITREEIVNACGVEDIHDGTNYSRTACV 490

Query:   301 IAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNF 360
             IAVAKAR+TFEPFLHQLG RLLHILKRLLPIS+YLLQKEGEYLSGHEVFL+RVASAFN+F
Sbjct:   491 IAVAKARETFEPFLHQLGARLLHILKRLLPISVYLLQKEGEYLSGHEVFLKRVASAFNSF 550

Query:   361 AESTERACREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLC 420
              ESTE++CR+KCMEDL STTRYVTWSLHNKNRAGLRQFLDSFG TE +    N++   L 
Sbjct:   551 VESTEKSCRDKCMEDLASTTRYVTWSLHNKNRAGLRQFLDSFGGTEHNTTSGNAIGFSLP 610

Query:   421 QESSFVSVANEKHDTKPRTDVKLXXXXXXXXXXXXXQTTETRLADLLDNTLWNRRLAPSS 480
             Q++          DTK R+DVKL             QTTE RLADLLD+TLWNR+LAPSS
Sbjct:   611 QDA-----LGGTTDTKSRSDVKLSHLASNIDSGSSIQTTEMRLADLLDSTLWNRKLAPSS 665

Query:   481 ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFD 540
             ERIVYALVQQIF GIREYFLASAELKFNCFLLMP+VDKLPALLRE+LE+AFE DLD++FD
Sbjct:   666 ERIVYALVQQIFQGIREYFLASAELKFNCFLLMPIVDKLPALLREELENAFEDDLDSIFD 725

Query:   541 ITNLRHSLSQQKSDTXXXXXXXXXXXXXXXXXHEQFISHHVMSSLSLAPS 590
             ITNLR SL Q+K  T                 +E+  SH    +L  APS
Sbjct:   726 ITNLRQSLDQKKRSTEIELRRIKRIKEKFRVMNEKLNSHEFAQNLK-APS 774
GO:0003924 "GTPase activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005739 "mitochondrion" evidence=ISM
GO:0010020 "chloroplast fission" evidence=IMP
GO:0009707 "chloroplast outer membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005777 "peroxisome" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0016559 "peroxisome fission" evidence=IMP
GO:0042802 "identical protein binding" evidence=IDA
GO:0007623 "circadian rhythm" evidence=IEP
DICTYBASE|DDB_G0268592 dlpA "dynamin like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2037026 DRP5A "Dynamin related protein 5A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271628 dlpC "dynamin like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285931 dlpB "dynamin like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84N64ARC5_ARATH3, ., 6, ., 5, ., 50.78470.98810.7516yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031524001
SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (773 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038716001
SubName- Full=Chromosome chr2 scaffold_97, whole genome shotgun sequence; (754 aa)
   •  • 0.458
GSVIVG00036883001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (157 aa)
    •   0.445
GSVIVG00035969001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (354 aa)
   •  • 0.417
GSVIVG00037716001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (333 aa)
      • 0.405
GSVIVG00036441001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (276 aa)
      • 0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
cd08771278 cd08771, DLP_1, Dynamin_like protein family includ 2e-18
pfam00350168 pfam00350, Dynamin_N, Dynamin family 8e-05
>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and Mx proteins Back     alignment and domain information 
 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 26/157 (16%)

Query: 1   MQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVF 59
           + +   IIL +   + D +N+   ++  ++DPE +RTI V TKLD   P       + + 
Sbjct: 144 ISNPRSIILAVVPANVDLANSEALKLAREVDPEGERTIGVLTKLDLMDPGTDAEDILLLL 203

Query: 60  LSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL 119
                      ++     +  V +                         +E+    EE+ 
Sbjct: 204 QGK--------VIPLKLGYVGVVNRSQKDIDSGK--------------SIEEALEAEEEF 241

Query: 120 ---GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVP 153
                       SR+G   LR  L +LLQK   +S+P
Sbjct: 242 FETHPWYKLLPASRVGTPALRKRLSKLLQKHIRESLP 278

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes interferon-induced Mx proteins that inhibit a wide range of viruses by blocking an early stage of the replication cycle. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 278
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 591
KOG0446657 consensus Vacuolar sorting protein VPS1, dynamin, 100.0
PF01031295 Dynamin_M: Dynamin central region; InterPro: IPR00 100.0
KOG0447980 consensus Dynamin-like GTP binding protein [Genera 99.42
smart00053240 DYNc Dynamin, GTPase. Large GTPases that mediate v 99.36
COG0699546 Predicted GTPases (dynamin-related) [General funct 97.73
KOG0446657 consensus Vacuolar sorting protein VPS1, dynamin, 96.68
PF10662143 PduV-EutP: Ethanolamine utilisation - propanediol 92.85
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-55  Score=493.53  Aligned_cols=472  Identities=17%  Similarity=0.133  Sum_probs=388.2

Q ss_pred             CCCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceE
Q 007717            1 MQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFT   79 (591)
Q Consensus         1 i~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFv   79 (591)
                      |++||||||||+||| |||||+|+++|++|||+|.|||||+||+|+|    |+|||+.+.|.|+.|+++   +|    ||
T Consensus       166 i~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~Dlm----dkGt~~~~~L~g~~~~l~---~g----~v  234 (657)
T KOG0446|consen  166 IEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFM----DKGTNAVTRLVGRPITLK---VG----YV  234 (657)
T ss_pred             ccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhh----hcCCcceeeecCCccccc---cc----ee
Confidence            589999999999999 9999999999999999999999999999999    999999999999999999   88    99


Q ss_pred             eecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Q 007717           80 SVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIP  157 (591)
Q Consensus        80 svp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~  157 (591)
                      +|.| |+  |.|  +..++         ++.++++.|..|  +||.|+....+||++||++.|+++|+.||++++|.|+.
T Consensus       235 ~vvn-R~--q~d--i~~~k---------~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~  300 (657)
T KOG0446|consen  235 GVVN-RS--QSI--IDFKK---------SILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKT  300 (657)
T ss_pred             eeec-cc--hhh--hhhhh---------hHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHH
Confidence            9988 66  666  55555         455566778777  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHHHhHhhcccccCCCcCcccchHHHhhhcCcccCCCCCCC
Q 007717          158 LLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQF  237 (591)
Q Consensus       158 ~L~~~~~~~~~eL~~~~~el~~~d~~~l~~~~l~~i~~F~~~~~~lI~Gt~~~~P~~~G~Tl~eEr~~~g~~~~~~g~~~  237 (591)
                      +|+..|.+++.+|..++. .+. + ..-...++.++..|+..|...++|....                           
T Consensus       301 ~i~~~~~~~~~el~~~g~-~~~-~-~~~~~~ll~~i~~~~~~~~~~v~g~~~~---------------------------  350 (657)
T KOG0446|consen  301 KINKLLEKYQDELNRIGA-VDV-D-LANSAALLAIIREDPRGLRTGVIGKLDL---------------------------  350 (657)
T ss_pred             HHHHHHHHHHHHHHHhcc-cCC-c-cchhhHHHHHHHHHHHHHHHhhcccccc---------------------------
Confidence            999999999999999997 222 2 2225678899999999999999998552                           


Q ss_pred             CcccCCCCCccccchhHHHHHHHh-hHhhhccc-cCCCCCHHHHHHHhccCCCCCCCc-----hhhHHHHHHHHHHHHhh
Q 007717          238 PHKLIPNAGMRLYGGAQYHRAMAE-FRFMVGGI-KCPPITREEIVNACGVEDIHDGTN-----YSRTACVIAVAKARDTF  310 (591)
Q Consensus       238 ~~~~v~~~~~eL~GGAqi~Rif~E-F~~~v~~i-~~~~ls~eeI~~Aig~~~~~~g~~-----~~~Afe~Iak~qir~l~  310 (591)
                          +|  +.+|+||||++++||+ |...+..+ |+..++..+|++++.   +..|+.     |+.||+.||++||+.+.
T Consensus       351 ----~~--~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~---~~~G~~~~lf~p~~afe~lvk~~i~~l~  421 (657)
T KOG0446|consen  351 ----VP--TKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVS---EASGIRPSLFVPESSFESLVKGQIQSLR  421 (657)
T ss_pred             ----cc--hhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHH---hccCCCccccCChHHHHHHHHHHHHHHh
Confidence                33  7899999999999999 99999999 787799999999995   555553     89999999999999999


Q ss_pred             cchHHHHHhhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC
Q 007717          311 EPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSLHNK  390 (591)
Q Consensus       311 ~P~L~cv~~Rl~~V~~eL~~I~~~~~~k~~~~l~ryp~l~~~v~~~~~~fi~e~~~~ck~~~~d~l~s~t~~v~w~L~~~  390 (591)
                      +|+++||    ..|+++|++++.++..+  ..+.|||.|+.++.++...|++++..++++++++.++.+.+|+|++.. .
T Consensus       422 ~p~l~~v----~~v~~el~~~~~~~~~~--~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i~~e~~yinT~h~-d  494 (657)
T KOG0446|consen  422 DPSLKCV----EEVHRELVRIVADSIRA--TELKRFPVLYSELVEIASSLIAEGLDETKKAVKNLIDLEQSYLNTDHP-D  494 (657)
T ss_pred             hhHHHHH----HHHHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcCh-h
Confidence            9999999    88999999999988885  269999999999999999999999999999999999999999985442 2


Q ss_pred             cchhhhhhhcccCCccchhhccccCCCCccccccccccccccCCCCCcccccccccccCCCCCCccchhhhHHHHhhhhh
Q 007717          391 NRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNT  470 (591)
Q Consensus       391 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  470 (591)
                      ..+..++.+......   ++   ..+..+.  +                          . .-.....+.....+.+.++
T Consensus       495 f~~~~~~al~~~~~~---~~---~~~~~~~--~--------------------------~-~~~~~~~~~~~~~~~~~~~  539 (657)
T KOG0446|consen  495 FRSLTDSALSSVTSP---SI---AAMKLIS--A--------------------------Q-LLKEELGECNSALKAIKNA  539 (657)
T ss_pred             hhhhHHHHHHHhhcc---cc---ccccccc--c--------------------------c-ccccccccccchhhhhcch
Confidence            222332222221100   00   0000000  0                          0 0011122333567777788


Q ss_pred             hhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhHHHHHHHHhhcccchhhhhchhhHHHHHHh
Q 007717          471 LWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQ  550 (591)
Q Consensus       471 l~~r~l~~~s~~iV~~l~~~iF~~IR~~~~~~~~~Kfn~fFL~P~~~~l~~~lr~~l~~~~d~~l~~vF~~~~~r~~L~~  550 (591)
                      .|+..+.+.......+...+.+..+...+.++....|+|+=+++++|..|..|.-.|...+.++|...|+..-.+ . .+
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~-~-~~  617 (657)
T KOG0446|consen  540 VGSIRLDPSDIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA-G-DE  617 (657)
T ss_pred             hhhhhhcccchhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-hh
Confidence            888888888888888888888888888888888888888888888888888888888888888888888877766 4 77


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007717          551 QKSDTEIEMKRIKKLKEKFKLIHEQFISHH  580 (591)
Q Consensus       551 ~~~~l~~e~~~~~~~~~kF~~i~~~~~~~~  580 (591)
                      +.++|..|...+++-+++++.--+.|+.+.
T Consensus       618 ~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~  647 (657)
T KOG0446|consen  618 QLESLLKEDPRIKRRRELQQKRLLALQKAL  647 (657)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence            788888888888777777777666555554

>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles Back     alignment and domain information
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] Back     alignment and domain information
>smart00053 DYNc Dynamin, GTPase Back     alignment and domain information
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only] Back     alignment and domain information
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-17
3zvr_A772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 1e-05
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 3e-05
1jwy_B315 Dynamin A GTPase domain; dynamin, GTPase, GDP, myo 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 83.7 bits (206), Expect = 7e-17
 Identities = 87/574 (15%), Positives = 179/574 (31%), Gaps = 173/574 (30%)

Query: 98  EEFKQAIFI-REMEDITSLEEKLGRS-------LSKQERSRIGVSKLRSFLEELLQKRYM 149
           ++  ++I    E++ I   ++ +  +       LSKQE        ++ F+EE+L+  Y 
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM------VQKFVEEVLRINY- 91

Query: 150 DSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVV 209
                ++  ++ E    +       ++       +L    +VF    +++L   LK    
Sbjct: 92  ---KFLMSPIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLK---- 139

Query: 210 APPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYG--GA----------QYHR 257
                    L+              L    +L P   + + G  G+            ++
Sbjct: 140 ---------LRQ------------ALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 258 AMAEFRFMV-----GGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEP 312
              +  F +          P    E +       D     N++      + +      + 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNWT------SRSDHSSNIKL 225

Query: 313 FLHQLGCRLLHILK-RLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREK 371
            +H +   L  +LK +     + +L           V   +  +AFN        +C+  
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLL---------NVQNAKAWNAFNL-------SCKI- 268

Query: 372 CMEDLVSTTRY--VTWSLHNKNRAGLR--QFLDSFGSTEQSAVLSNSLSMPL-------C 420
               L+ TTR+  VT  L       +       +    E  ++L   L            
Sbjct: 269 ----LL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 421 QESSFV--SVANEKHDTKPRTD----VKLSQVASGVDSS-SSVQTTETR-----LADLLD 468
             +      +A    D     D    V   ++ + ++SS + ++  E R     L+    
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 469 NT---------LWNRRLAPSSERIV-----YALVQQ-------IFHGIREYFLASAELKF 507
           +          +W   +      +V     Y+LV++           I  Y     ELK 
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YL----ELKV 437

Query: 508 NCFLLMPVVDKLPALLREDLES-----AFEGD------LDNVFDITNLRHSLSQQKSDTE 556
                    +   AL R  ++       F+ D      LD  F  +++ H L   +    
Sbjct: 438 KL-------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPER 489

Query: 557 IEMKRIKKLKEKF---KLIHEQFISHHVMSSLSL 587
           + + R+  L  +F   K+ H+    +   S L+ 
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Length = 772 Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Length = 360 Back     alignment and structure
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Length = 315 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
3szr_A608 Interferon-induced GTP-binding protein MX1; interf 100.0
3zvr_A772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 100.0
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 99.71
2x2e_A353 Dynamin-1; nitration, hydrolase, membrane fission, 99.7
3ljb_A271 Interferon-induced GTP-binding protein MX1; four-h 99.38
1jwy_B315 Dynamin A GTPase domain; dynamin, GTPase, GDP, myo 99.06
2aka_B299 Dynamin-1; fusion protein, GTPase domain, myosin, 99.0
2j69_A695 Bacterial dynamin-like protein; FZO, FZL, GTPase, 94.57
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
Probab=100.00  E-value=3.9e-39  Score=359.39  Aligned_cols=408  Identities=13%  Similarity=0.102  Sum_probs=319.5

Q ss_pred             CCCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhh--HhhhcCCCcccCCccccCCCCc
Q 007717            1 MQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASD--VEVFLSPPACTLDGFILGGSPF   77 (591)
Q Consensus         1 i~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtD--v~~~L~g~~~~L~~~llG~~pF   77 (591)
                      |+++++|||+|.+++ |+++++++++++++||+|.|||||+||.|++    +.|++  +.++|.|+.++|.   +|    
T Consensus       181 l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv----~~g~~~~~~~~l~~~~~~l~---~g----  249 (608)
T 3szr_A          181 IQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV----DKGTEDKVVDVVRNLVFHLK---KG----  249 (608)
T ss_dssp             TTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS----SSSSTTCCCCCC--CCSCCS---SC----
T ss_pred             HhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc----CcccHHHHHHHHhCcccccC---ce----
Confidence            467899999999999 9999999999999999999999999999999    76764  6799999999999   89    


Q ss_pred             eEeecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhh--hcChhHHHHHHHHHHHHHHHhhhh
Q 007717           78 FTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERS--RIGVSKLRSFLEELLQKRYMDSVP  153 (591)
Q Consensus        78 Fvsvp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~--~~G~~~L~~~Ln~~L~~hyr~~lP  153 (591)
                      |++|.| |+  |+|  +..+.         ++.+++..|++|  +|+.|+...+  +|||++|+++|+++|.+||+.+||
T Consensus       250 ~~~v~n-r~--~~~--~~~~~---------~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP  315 (608)
T 3szr_A          250 YMIVKC-RG--QQE--IQDQL---------SLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLP  315 (608)
T ss_dssp             EECCCC-SC--TTC--TTTCC---------CHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEec-Cc--hhh--cccCC---------CHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhH
Confidence            999977 65  666  33333         455666778887  8888887764  899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHHHhHhhcccccCCCcCcccchHHHhhhcCcccCCC
Q 007717          154 MIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTD  233 (591)
Q Consensus       154 ~i~~~L~~~~~~~~~eL~~~~~el~~~d~~~l~~~~l~~i~~F~~~~~~lI~Gt~~~~P~~~G~Tl~eEr~~~g~~~~~~  233 (591)
                      .|+..|++.+..++.+|..++....+ ++...+..++++++.|++.|.++|+|...                        
T Consensus       316 ~l~~~i~~~l~~~~~el~~lg~~~~~-~~~~~~~~l~~~~~~f~~~~~~~~~g~~~------------------------  370 (608)
T 3szr_A          316 LLENQIKETHQRITEELQKYGVDIPE-DENEKMFFLIDKVNAFNQDITALMQGEET------------------------  370 (608)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHSSCCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCc------------------------
Confidence            99999999999999999999987655 55555667889999999999999999732                        


Q ss_pred             CCCCCcccCCCCCccccchhHHHHHHHhhHhhhccc--cCCCCCHHHHHHHhccCCCCCCCc-----hhhHHHHHHHHHH
Q 007717          234 GLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGI--KCPPITREEIVNACGVEDIHDGTN-----YSRTACVIAVAKA  306 (591)
Q Consensus       234 g~~~~~~~v~~~~~eL~GGAqi~Rif~EF~~~v~~i--~~~~ls~eeI~~Aig~~~~~~g~~-----~~~Afe~Iak~qi  306 (591)
                                ..+.++.++++++++|++|...+...  ++....++||++++.   ++.|+.     |..||+.|+++||
T Consensus       371 ----------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~g~~~~~f~~~~~fe~lvk~qi  437 (608)
T 3szr_A          371 ----------VGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFEN---QAAAAELPGFVNYRTFETIVKQQI  437 (608)
T ss_dssp             ----------CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCSCSSSCSSCTHHHHHHHHHHH
T ss_pred             ----------CCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHH---HccCCCCCCCccHHHHHHHHHHHH
Confidence                      12335668899999999987666543  455677899999995   555552     7999999999999


Q ss_pred             HHhhcchHHHHHhhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 007717          307 RDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWS  386 (591)
Q Consensus       307 r~l~~P~L~cv~~Rl~~V~~eL~~I~~~~~~k~~~~l~ryp~l~~~v~~~~~~fi~e~~~~ck~~~~d~l~s~t~~v~w~  386 (591)
                      ++|.+|+++|+    ..|++.+..++..++.   ..+.+||.|++++.+++.+++++++.+|+++|+++|+++..|++-+
T Consensus       438 ~~l~~Pa~~~v----~~V~~~v~~~~~~~~~---~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d  510 (608)
T 3szr_A          438 KALEEPAVDML----HTVTDMVRLAFTDVSI---KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAF  510 (608)
T ss_dssp             GGGHHHHHHHH----HHHHHHHHHHHHHHHH---HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            99999999999    7799999999888777   4699999999999999999999999999999999999998776311


Q ss_pred             ccCCcchhhhhhhcccCCccchhhccccCCCCccccccccccccccCCCCCcccccccccccCCCCCCccchhhhHHHHh
Q 007717          387 LHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADL  466 (591)
Q Consensus       387 L~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (591)
                      -+         |.                       +                            .              
T Consensus       511 ~~---------~~-----------------------~----------------------------~--------------  516 (608)
T 3szr_A          511 QS---------SS-----------------------A----------------------------T--------------  516 (608)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc---------cc-----------------------C----------------------------C--------------
Confidence            00         00                       0                            0              


Q ss_pred             hhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhHHHHHHHHhhcccchhhhhchhhHHH
Q 007717          467 LDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRH  546 (591)
Q Consensus       467 ~e~~l~~r~l~~~s~~iV~~l~~~iF~~IR~~~~~~~~~Kfn~fFL~P~~~~l~~~lr~~l~~~~d~~l~~vF~~~~~r~  546 (591)
                                 ..+..-+..++.--|.-.+..|+-+|++.-..|.+.-..+.|-..|-..|-  .+++++++..=.   .
T Consensus       517 -----------~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~--~~~~~~~ll~E~---~  580 (608)
T 3szr_A          517 -----------DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQ--DKDTYSWLLKER---S  580 (608)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTT--CHHHHHHHTCCC---H
T ss_pred             -----------CccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--cchhHHHHhCCC---H
Confidence                       000112556777788888999999999888888766666666555544443  234455555433   3


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHH
Q 007717          547 SLSQQKSDTEIEMKRIKKLKEK  568 (591)
Q Consensus       547 ~L~~~~~~l~~e~~~~~~~~~k  568 (591)
                      ...++|.+|..+++++++.++.
T Consensus       581 ~~~~~R~~l~~~~~~L~~A~~~  602 (608)
T 3szr_A          581 DTSDKRKFLKERLARLTQARRR  602 (608)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777778777776543
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Back     alignment and structure
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A Back     alignment and structure
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens} Back     alignment and structure
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Back     alignment and structure
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Back     alignment and structure
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 591
d2akab1299 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n 3e-11
d1jwyb_306 c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc 1e-10
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.2 bits (150), Expect = 3e-11
 Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 23/162 (14%)

Query: 1   MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60
            +    I+      SD +N+   ++  ++DP+ +RTI V TKLD           +E  L
Sbjct: 160 TKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKL 219

Query: 61  SPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLG 120
            P      G +                                      E    L     
Sbjct: 220 LPLRRGYIGVVNRSQKDIDGKKDITA-------------------ALAAERKFFLSHPSY 260

Query: 121 RSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKE 162
           R L      R+G   L+  L + L     D++P +   L+ +
Sbjct: 261 RHL----ADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
d1jwyb_306 Dynamin G domain {Dictyostelium discoideum [TaxId: 99.71
d2akab1299 Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 99.65
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.71  E-value=1.6e-17  Score=166.11  Aligned_cols=138  Identities=26%  Similarity=0.328  Sum_probs=114.5

Q ss_pred             CCCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceE
Q 007717            1 MQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFT   79 (591)
Q Consensus         1 i~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFv   79 (591)
                      |++++++||||.+++ ||.++.++++++++||.+.|||+|+||+|..    ++++++.++|.+...++.   .|    |.
T Consensus       165 i~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~----~~~~~~~~~l~~~~~~~~---~~----~~  233 (306)
T d1jwyb_         165 IKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM----DKGTDAMEVLTGRVIPLT---LG----FI  233 (306)
T ss_dssp             HHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS----CSSCCCHHHHTTSSSCCT---TC----EE
T ss_pred             HhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccc----cchhHHHHHHhCCccccc---CC----ce
Confidence            357899999999999 9999999999999999999999999999998    899999999998765544   55    66


Q ss_pred             eecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Q 007717           80 SVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIP  157 (591)
Q Consensus        80 svp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~  157 (591)
                      .+++.+.   .+           .....+.+++...|+.|  +++.++.+.+++|+.+|+++|+++|++||+++||.|+.
T Consensus       234 ~~~~~~~---~~-----------~~~~~~~~~~~~~E~~~f~~~~~~~~l~~r~Gi~~L~~~L~~~L~~~i~~~lP~i~~  299 (306)
T d1jwyb_         234 GVINRSQ---ED-----------IIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKV  299 (306)
T ss_dssp             ECCCCCH---HH-----------HSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecCch---hh-----------ccccCCHHHHHHHHHHHHhCCchhcchHHHhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            7766222   11           11233555666667766  88899999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 007717          158 LLEKEY  163 (591)
Q Consensus       158 ~L~~~~  163 (591)
                      .|++.+
T Consensus       300 ~i~~~L  305 (306)
T d1jwyb_         300 KVSKML  305 (306)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            887643
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure