Citrus Sinensis ID: 007723

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
MEVSTCSPLSVNSRCLFANQPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDDRGT
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHcccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHcccccccHHHHHHHHHHHHHHHcccEEEEEcccHHHHccccccccccccHHHHccccccccccccHHHHccccHHHHHHHHcccHHHHHcccccccccccHHHHHHHHHccHHHHHccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHcccccccccccccc
cEEEccccccEccEEEEccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEEcHHHHEccccccccccccHHHHHHHHHHHHHHccHHEEcHccHHHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
mevstcsplsvnsrclfanqpppprhrlpplqyvnpmssffNISMISHKVQFFHSnytsnnnncnpicarkrrkiipissVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIaedrhpngflesgiTIDKAREAVVSIWHstnnqdtddaaaqgkpfssaakmpfsiSTKRVFEAAVEYSRsrgynfiapehialglftvddgsagRVLKRLGVDVNHLAAVAVSRLQGElakegrepslakgvrensisgktaalkspgrtrASALEQFCVDLTARAseelidpvigrETEIQRIIQILCRrtknnpillgesgvgKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLigsgtvgrgnkgtgldisnllkpslgrgelqciASTTQDEHRTQFEKDKALARrfqpvlisepsqEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARyisdrylpdkAIDLVDEAGSRAHIELFKRKKEqqtcilskppddywQEIRTVQAMHEVVQGSRLKYDDVVAsmgdtseivvesslpsasddddrgt
mevstcsplsvnsrcLFANQPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHstnnqdtddaaaqgkpfssaakmpfsiSTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRlqgelakegrepslakgvrensisgktaalkspgrtrASALEQFCVDLTARASeelidpvigretEIQRIIQILCrrtknnpillgesgVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIgsgtvgrgnkgtglDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRfqpvlisepsqedAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIElfkrkkeqqtcilskppddYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTseivvesslpsasddddrgt
MEVSTCSPLSVNSRCLFANQpppprhrlpplQYVNPMSSFFNISMISHKVQFFHSNYTSnnnncnPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDDRGT
******************************LQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWH**************************ISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL***************************************LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA********************FQPVLI******DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS************************
*******************************************************************************SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS************************SISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ****************************************QFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIEL**********************************************************************
*********SVNSRCLFANQPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST*********EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVV***************
*EVSTCSPLSVNSRCLFANQPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFHS******************KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG**********************************ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVE**************
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ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVSTCSPLSVNSRCLFANQPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDDRGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query591 2.2.26 [Sep-21-2011]
P42762 945 Chaperone protein ClpD, c yes no 0.920 0.575 0.712 0.0
Q7XL03 937 Chaperone protein ClpD2, yes no 0.798 0.503 0.653 0.0
Q6H795 938 Chaperone protein ClpD1, yes no 0.800 0.504 0.648 1e-176
Q9TM05 854 ATP-dependent Clp proteas N/A no 0.724 0.501 0.432 1e-100
O78410 819 ATP-dependent Clp proteas yes no 0.681 0.492 0.455 2e-99
P37571 810 Negative regulator of gen yes no 0.686 0.501 0.459 1e-98
P31541 926 ATP-dependent Clp proteas N/A no 0.693 0.442 0.475 6e-98
Q8EU05 809 Chaperone protein ClpB OS yes no 0.688 0.503 0.450 6e-98
P35100 922 Chaperone protein ClpC, c N/A no 0.758 0.485 0.438 3e-97
Q1XDF4 821 ATP-dependent Clp proteas N/A no 0.686 0.494 0.451 8e-97
>sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1 Back     alignment and function desciption
 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/550 (71%), Positives = 453/550 (82%), Gaps = 6/550 (1%)

Query: 40  FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
           +  IS+ +  +  F +  T    N      RKR+K  PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42  YLGISLSNRTIHRFSTTPT----NLRRFPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97

Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
           AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW   N+ D+    A 
Sbjct: 98  AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEAS 156

Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
              +S +  MPFSISTKRVFEAAVEYSR+    +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216

Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI-SGKTAALKSPGRTRASALEQFCV 278
            ++N L A A++RL+GE+AK+GREPS +      S  SG+ A     G+   + LEQFCV
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKNVLEQFCV 276

Query: 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338
           DLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A
Sbjct: 277 DLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEA 336

Query: 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398
             P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGSG
Sbjct: 337 SAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSG 396

Query: 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458
           TVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS
Sbjct: 397 TVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPS 456

Query: 459 QEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518
           +EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA 
Sbjct: 457 EEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRAR 516

Query: 519 IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVES 578
           IE F++KKE   CILSKPP+DYWQEI+TVQAMHEVV  SR K DD  A   ++ E+V ES
Sbjct: 517 IEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEES 576

Query: 579 SLPSASDDDD 588
           SLP A+ DD+
Sbjct: 577 SLPPAAGDDE 586
Molecular chaperone that may interact with a clpP-like protease involved in degradation of denatured proteins in the chloroplast.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD2 PE=2 SV=2 Back     alignment and function description
>sp|Q6H795|CLPD1_ORYSJ Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1 Back     alignment and function description
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1 Back     alignment and function description
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus subtilis (strain 168) GN=clpC PE=1 SV=1 Back     alignment and function description
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1 Back     alignment and function description
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3 SV=1 Back     alignment and function description
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
224119914 948 predicted protein [Populus trichocarpa] 0.925 0.577 0.718 0.0
387169509 946 hypothetical protein 11M19.14 [Arabidops 0.920 0.575 0.716 0.0
297792419 946 hypothetical protein ARALYDRAFT_495173 [ 0.920 0.575 0.709 0.0
312282443 950 unnamed protein product [Thellungiella h 0.983 0.611 0.673 0.0
387169538 943 hypothetical protein 7G9.17 [Boechera st 0.920 0.576 0.713 0.0
18423233 945 ERD1 protein [Arabidopsis thaliana] gi|1 0.920 0.575 0.712 0.0
14335170640 AT5g51070/K3K7_27 [Arabidopsis thaliana] 0.920 0.85 0.710 0.0
255539981 946 ERD1 protein, chloroplast precursor, put 0.913 0.570 0.706 0.0
387169561 945 hypothetical protein 34G24.25 [Capsella 0.920 0.575 0.704 0.0
224134250 939 predicted protein [Populus trichocarpa] 0.903 0.568 0.701 0.0
>gi|224119914|ref|XP_002318194.1| predicted protein [Populus trichocarpa] gi|222858867|gb|EEE96414.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/557 (71%), Positives = 470/557 (84%), Gaps = 10/557 (1%)

Query: 35  NPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVI 94
           +P SS F IS IS K Q   +      N+       K+R+I+ +S+VFERFTERA+KAV+
Sbjct: 42  SPFSSCFGIS-ISQKHQNRKTLLLKRFNSS------KKRRILQVSAVFERFTERAIKAVV 94

Query: 95  FSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWH-STNNQDT 153
           FSQREA++LGKDMVFTQHLLLGLI EDR PNGFL SGI IDKARE V SIW   +++ + 
Sbjct: 95  FSQREARALGKDMVFTQHLLLGLIIEDRDPNGFLGSGIKIDKAREVVKSIWQRESDSAEA 154

Query: 154 DDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGR 213
            +  ++G+   S + +PFS STKRVFEAA+EYSR+ G+NFIAPEHIA+GLFTVDDGSAGR
Sbjct: 155 SELVSKGERGVSHSDVPFSASTKRVFEAAIEYSRTMGHNFIAPEHIAIGLFTVDDGSAGR 214

Query: 214 VLKRLGVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGKTAALKSPGRTR-AS 271
           VL RLGVD + LAA+A+++LQGEL K+GREPS+ +KG    S+S + AAL+S  +T+  S
Sbjct: 215 VLNRLGVDGDALAAIAITKLQGELVKDGREPSVESKGKHGKSVSKRAAALRSYEKTKEKS 274

Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
           AL QFCVDLTARASE  IDPVIGR +EI+RI+QILCRRTKNNPILLGESGVGKTAIAEGL
Sbjct: 275 ALAQFCVDLTARASEGRIDPVIGRHSEIERIVQILCRRTKNNPILLGESGVGKTAIAEGL 334

Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391
           AI+I QA++PVFLL KR+MSLD+GLL+AGAKERGELEARVT+LI EIQK GDVILFIDEV
Sbjct: 335 AIKIAQADIPVFLLEKRVMSLDVGLLIAGAKERGELEARVTSLIREIQKEGDVILFIDEV 394

Query: 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQP 451
           HTL+G+GTVGRGNKG+GLDI+N+LKPSLGRGELQCIASTT DE+RT FE DKALARRFQP
Sbjct: 395 HTLVGTGTVGRGNKGSGLDIANILKPSLGRGELQCIASTTLDEYRTHFEIDKALARRFQP 454

Query: 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511
           VLI+EPSQEDA+RILLGLR++YEAHHNC+FT EAINAAVHLSARYI+DRYLPDKAIDL+D
Sbjct: 455 VLINEPSQEDAIRILLGLRQRYEAHHNCRFTPEAINAAVHLSARYIADRYLPDKAIDLID 514

Query: 512 EAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDT 571
           EAGSRA IE ++RKKEQQT ILSK PDDYWQEIRTVQAMHEVV  SRL  D  ++SM  +
Sbjct: 515 EAGSRARIEAYRRKKEQQTFILSKTPDDYWQEIRTVQAMHEVVLASRLANDCSLSSMDGS 574

Query: 572 SEIVVESSLPSASDDDD 588
            EI +ESSLP AS+ D+
Sbjct: 575 GEITIESSLPPASNADE 591

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|387169509|gb|AFJ66170.1| hypothetical protein 11M19.14 [Arabidopsis halleri] Back     alignment and taxonomy information
>gi|297792419|ref|XP_002864094.1| hypothetical protein ARALYDRAFT_495173 [Arabidopsis lyrata subsp. lyrata] gi|297309929|gb|EFH40353.1| hypothetical protein ARALYDRAFT_495173 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|312282443|dbj|BAJ34087.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|387169538|gb|AFJ66198.1| hypothetical protein 7G9.17 [Boechera stricta] Back     alignment and taxonomy information
>gi|18423233|ref|NP_568750.1| ERD1 protein [Arabidopsis thaliana] gi|1169544|sp|P42762.1|CLPD_ARATH RecName: Full=Chaperone protein ClpD, chloroplastic; AltName: Full=ATP-dependent Clp protease ATP-binding subunit ClpD homolog; AltName: Full=Casein lytic proteinase D; AltName: Full=ERD1 protein; AltName: Full=Protein EARLY RESPONSIVE TO DEHYDRATION 1; AltName: Full=Protein SENESCENCE ASSOCIATED GENE 15; Flags: Precursor gi|497629|dbj|BAA04506.1| ERD1 protein [Arabidopsis thaliana] gi|10177198|dbj|BAB10330.1| Erd1 protein precursor [Arabidopsis thaliana] gi|14334878|gb|AAK59617.1| putative ATP-dependent Clp protease ATP-binding subunit ClpD, ERD1 protein precursor [Arabidopsis thaliana] gi|22136916|gb|AAM91802.1| putative ATP-dependent Clp protease ATP-binding subunit ClpD, ERD1 protein precursor [Arabidopsis thaliana] gi|332008646|gb|AED96029.1| ERD1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|14335170|gb|AAK59865.1| AT5g51070/K3K7_27 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255539981|ref|XP_002511055.1| ERD1 protein, chloroplast precursor, putative [Ricinus communis] gi|223550170|gb|EEF51657.1| ERD1 protein, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|387169561|gb|AFJ66220.1| hypothetical protein 34G24.25 [Capsella rubella] Back     alignment and taxonomy information
>gi|224134250|ref|XP_002321773.1| predicted protein [Populus trichocarpa] gi|222868769|gb|EEF05900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
TAIR|locus:2157363 945 ERD1 "EARLY RESPONSIVE TO DEHY 0.986 0.616 0.690 2.6e-205
UNIPROTKB|Q6H795 938 CLPD1 "Chaperone protein ClpD1 0.820 0.517 0.642 3.6e-160
TAIR|locus:2157383 929 CLPC1 "CLPC homologue 1" [Arab 0.409 0.260 0.570 2.6e-94
UNIPROTKB|Q81VV9 811 BAS0081 "Negative regulator of 0.583 0.425 0.471 1.1e-91
TIGR_CMR|BA_0080 811 BA_0080 "negative regulator of 0.583 0.425 0.471 1.1e-91
UNIPROTKB|Q3A9N1 811 CHY_2348 "Negative regulator o 0.570 0.415 0.488 8.2e-83
TIGR_CMR|CHY_2348 811 CHY_2348 "negative regulator o 0.570 0.415 0.488 8.2e-83
UNIPROTKB|P0A522 848 clpC "Probable ATP-dependent C 0.590 0.411 0.467 1e-77
TIGR_CMR|SO_3577 857 SO_3577 "clpB protein" [Shewan 0.468 0.323 0.527 8.5e-77
UNIPROTKB|Q889C2 854 clpB "Chaperone protein ClpB" 0.497 0.344 0.521 1.4e-76
TAIR|locus:2157363 ERD1 "EARLY RESPONSIVE TO DEHYDRATION 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1986 (704.2 bits), Expect = 2.6e-205, P = 2.6e-205
 Identities = 408/591 (69%), Positives = 476/591 (80%)

Query:     1 MEV-STCSPLSVNS-RCLFANQXXXXXXXXXXXQYVNPMSSFFNISMISHKVQFFHSNYT 58
             MEV ST SPL+++S R L A+               +  SS+  IS+ +  +  F +  T
Sbjct:     1 MEVLSTSSPLTLHSHRLLSASSSSSHVTSIAASSLSSFASSYLGISLSNRTIHRFSTTPT 60

Query:    59 SXXXXXXPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLI 118
             +      P   RKR+K  PIS+VFERFTERA++A+IFSQ+EAKSLGKDMV+TQHLLLGLI
Sbjct:    61 NLRRF--P--QRKRKKFTPISAVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLI 116

Query:   119 AEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRV 178
             AEDR P GFL SGITIDKAREAV SIW   N+ D+    A    +S +  MPFSISTKRV
Sbjct:   117 AEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEASSTSYSKSTDMPFSISTKRV 175

Query:   179 FEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELA 238
             FEAAVEYSR+    +IAPEHIA+GLFTVDDGSAGRVLKRLG ++N L A A++RL+GE+A
Sbjct:   176 FEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLGANMNLLTAAALTRLKGEIA 235

Query:   239 KEGREPSLA-KGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRET 297
             K+GREPS + KG  E+  SG+ A     G+   + LEQFCVDLTARASE LIDPVIGRE 
Sbjct:   236 KDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKNVLEQFCVDLTARASEGLIDPVIGREK 295

Query:   298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357
             E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A  P FLL+KRIMSLD+GLL
Sbjct:   296 EVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEASAPGFLLTKRIMSLDIGLL 355

Query:   358 MAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417
             MAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGSGTVGRGNKG+GLDI+NLLKP
Sbjct:   356 MAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSGTVGRGNKGSGLDIANLLKP 415

Query:   418 SLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477
             SLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS+EDAV+ILLGLREKYEAHH
Sbjct:   416 SLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPSEEDAVKILLGLREKYEAHH 475

Query:   478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP 537
             NCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA IE F++KKE   CILSKPP
Sbjct:   476 NCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRARIEAFRKKKEDAICILSKPP 535

Query:   538 DDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDD 588
             +DYWQEI+TVQAMHEVV  SR K DD  A   ++ E+V ESSLP A+ DD+
Sbjct:   536 NDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEESSLPPAAGDDE 586
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016887 "ATPase activity" evidence=ISS;IDA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA;TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0034214 "protein hexamerization" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0009646 "response to absence of light" evidence=RCA
UNIPROTKB|Q6H795 CLPD1 "Chaperone protein ClpD1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2157383 CLPC1 "CLPC homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q81VV9 BAS0081 "Negative regulator of genetic competence ClpC/MecB" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0080 BA_0080 "negative regulator of genetic competence ClpC/MecB" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9N1 CHY_2348 "Negative regulator of genetic competence clpC/mecB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2348 CHY_2348 "negative regulator of genetic competence clpC/mecB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P0A522 clpC "Probable ATP-dependent Clp protease ATP-binding subunit" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3577 SO_3577 "clpB protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q889C2 clpB "Chaperone protein ClpB" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42762CLPD_ARATHNo assigned EC number0.71270.92040.5756yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XII001082
hypothetical protein (948 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
COG0542 786 COG0542, clpA, ATP-binding subunits of Clp proteas 1e-153
CHL00095 821 CHL00095, clpC, Clp protease ATP binding subunit 1e-132
TIGR02639 730 TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi 1e-125
TIGR03346 852 TIGR03346, chaperone_ClpB, ATP-dependent chaperone 1e-124
TIGR03345 852 TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp 1e-107
PRK11034 758 PRK11034, clpA, ATP-dependent Clp protease ATP-bin 4e-96
PRK10865 857 PRK10865, PRK10865, protein disaggregation chapero 1e-95
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 6e-19
smart00382148 smart00382, AAA, ATPases associated with a variety 4e-10
pfam0286153 pfam02861, Clp_N, Clp amino terminal domain 7e-09
pfam00004131 pfam00004, AAA, ATPase family associated with vari 3e-07
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 1e-04
COG3899 849 COG3899, COG3899, Predicted ATPase [General functi 1e-04
pfam0286153 pfam02861, Clp_N, Clp amino terminal domain 4e-04
COG0464494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 8e-04
PRK09183259 PRK09183, PRK09183, transposase/IS protein; Provis 0.001
PRK13341 725 PRK13341, PRK13341, recombination factor protein R 0.002
pfam13401124 pfam13401, AAA_22, AAA domain 0.002
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  459 bits (1182), Expect = e-153
 Identities = 189/440 (42%), Positives = 257/440 (58%), Gaps = 41/440 (9%)

Query: 84  RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
           + TERA KA+  +Q  A+    + V  +HLLL L+ + +        GI +DK R+ +  
Sbjct: 1   KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQEL-- 58

Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
                     ++   +      +  +   +  KRV E A   ++S G  +++ EH+ L L
Sbjct: 59  ----------EEFIDKLPKVLGSPYLSPRL--KRVLERAWLLAQSLGDEYVSTEHLLLAL 106

Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALK 263
               +  A  +LK+LGV    +  +                          + G      
Sbjct: 107 LNEPESVAAYILKKLGVTRKDVEELI-----------------------EELRGGNEVDS 143

Query: 264 SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
                   ALE++  DLT  A E  +DPVIGR+ EI+R IQIL RRTKNNP+L+GE GVG
Sbjct: 144 KNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVG 203

Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGD 383
           KTAI EGLA RIV  +VP  L  KRI SLD+G L+AGAK RGE E R+  ++ E++KS +
Sbjct: 204 KTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKN 263

Query: 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443
           VILFIDE+HT++G+G      +G  +D +NLLKP+L RGEL+CI +TT DE+R   EKD 
Sbjct: 264 VILFIDEIHTIVGAG----ATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDA 319

Query: 444 ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503
           AL RRFQ VL+ EPS ED + IL GL+E+YEAHH  + T EA+ AAV LS RYI DR+LP
Sbjct: 320 ALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLP 379

Query: 504 DKAIDLVDEAGSRAHIELFK 523
           DKAIDL+DEAG+R  +E+ K
Sbjct: 380 DKAIDLLDEAGARVRLEIDK 399

Length = 786
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit Back     alignment and domain information
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB Back     alignment and domain information
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction only] Back     alignment and domain information
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional Back     alignment and domain information
>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 591
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 100.0
CHL00095 821 clpC Clp protease ATP binding subunit 100.0
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 100.0
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 100.0
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 100.0
PRK10865 857 protein disaggregation chaperone; Provisional 100.0
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 100.0
KOG1051 898 consensus Chaperone HSP104 and related ATP-depende 100.0
COG2256 436 MGS1 ATPase related to the helicase subunit of the 99.96
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.92
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 99.92
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 99.91
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.91
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.9
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 99.9
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.9
KOG2028 554 consensus ATPase related to the helicase subunit o 99.9
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.9
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 99.89
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 99.89
COG2812 515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 99.89
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 99.89
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 99.88
PLN03025319 replication factor C subunit; Provisional 99.88
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.88
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 99.88
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 99.88
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 99.88
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 99.87
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.87
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.87
PRK13342 413 recombination factor protein RarA; Reviewed 99.87
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 99.86
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 99.86
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 99.86
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 99.86
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 99.85
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 99.85
PRK13341 725 recombination factor protein RarA/unknown domain f 99.85
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 99.85
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 99.85
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 99.85
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 99.84
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 99.84
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 99.84
KOG0733 802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 99.84
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 99.83
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.83
PRK14953 486 DNA polymerase III subunits gamma and tau; Provisi 99.82
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 99.82
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.82
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 99.82
PRK06305 451 DNA polymerase III subunits gamma and tau; Validat 99.82
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 99.82
PRK12402337 replication factor C small subunit 2; Reviewed 99.81
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.81
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 99.81
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 99.8
KOG0736953 consensus Peroxisome assembly factor 2 containing 99.8
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 99.8
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 99.8
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 99.8
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.8
CHL00181287 cbbX CbbX; Provisional 99.79
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.79
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 99.79
PRK00440319 rfc replication factor C small subunit; Reviewed 99.78
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 99.78
KOG0734 752 consensus AAA+-type ATPase containing the peptidas 99.78
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.78
CHL00195489 ycf46 Ycf46; Provisional 99.77
CHL00095821 clpC Clp protease ATP binding subunit 99.77
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.77
PRK04195 482 replication factor C large subunit; Provisional 99.76
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.76
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 99.75
PHA02544316 44 clamp loader, small subunit; Provisional 99.75
PRK03992389 proteasome-activating nucleotidase; Provisional 99.74
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 99.74
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 99.74
TIGR01241 495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.73
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 99.72
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 99.72
PRK08084235 DNA replication initiation factor; Provisional 99.72
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 99.72
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 99.72
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 99.7
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 99.7
KOG0731 774 consensus AAA+-type ATPase containing the peptidas 99.7
CHL00176 638 ftsH cell division protein; Validated 99.69
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 99.69
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 99.69
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.69
PRK06893229 DNA replication initiation factor; Validated 99.66
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 99.66
PRK05642234 DNA replication initiation factor; Validated 99.65
PRK07940394 DNA polymerase III subunit delta'; Validated 99.64
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 99.63
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 99.63
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 99.62
COG0465 596 HflB ATP-dependent Zn proteases [Posttranslational 99.61
PRK08727233 hypothetical protein; Validated 99.61
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 99.6
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 99.59
CHL00206 2281 ycf2 Ycf2; Provisional 99.59
TIGR00763 775 lon ATP-dependent protease La. This protein is ind 99.59
PRK09112351 DNA polymerase III subunit delta'; Validated 99.58
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 99.58
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 99.57
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.57
PRK10733 644 hflB ATP-dependent metalloprotease; Reviewed 99.57
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 99.56
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 99.56
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 99.56
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 99.55
PRK06620214 hypothetical protein; Validated 99.55
PRK08903227 DnaA regulatory inactivator Hda; Validated 99.55
TIGR00602 637 rad24 checkpoint protein rad24. This family is bas 99.55
PF00004132 AAA: ATPase family associated with various cellula 99.54
PTZ00112 1164 origin recognition complex 1 protein; Provisional 99.54
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.54
KOG0741 744 consensus AAA+-type ATPase [Posttranslational modi 99.54
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.53
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.53
KOG0730 693 consensus AAA+-type ATPase [Posttranslational modi 99.53
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 99.53
PRK09087226 hypothetical protein; Validated 99.53
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.53
PRK07471365 DNA polymerase III subunit delta'; Validated 99.53
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.52
PRK05564313 DNA polymerase III subunit delta'; Validated 99.52
PRK12422445 chromosomal replication initiation protein; Provis 99.52
PRK00149450 dnaA chromosomal replication initiation protein; R 99.52
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 99.51
PRK14088440 dnaA chromosomal replication initiation protein; P 99.51
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.5
TIGR00362405 DnaA chromosomal replication initiator protein Dna 99.5
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.5
PRK14086617 dnaA chromosomal replication initiation protein; P 99.49
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 99.48
COG0466 782 Lon ATP-dependent Lon protease, bacterial type [Po 99.47
PRK14087450 dnaA chromosomal replication initiation protein; P 99.46
PRK04132846 replication factor C small subunit; Provisional 99.46
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 99.46
PRK07399314 DNA polymerase III subunit delta'; Validated 99.46
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 99.44
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.44
KOG2004 906 consensus Mitochondrial ATP-dependent protease PIM 99.42
PRK13531 498 regulatory ATPase RavA; Provisional 99.42
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 99.41
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 99.4
PRK10865857 protein disaggregation chaperone; Provisional 99.4
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 99.4
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 99.39
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 99.39
COG0593408 DnaA ATPase involved in DNA replication initiation 99.39
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.38
PRK08058329 DNA polymerase III subunit delta'; Validated 99.38
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 99.38
COG0470325 HolB ATPase involved in DNA replication [DNA repli 99.36
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 99.36
TIGR02974329 phageshock_pspF psp operon transcriptional activat 99.35
smart00350509 MCM minichromosome maintenance proteins. 99.34
COG2204464 AtoC Response regulator containing CheY-like recei 99.34
COG3829560 RocR Transcriptional regulator containing PAS, AAA 99.33
COG0714329 MoxR-like ATPases [General function prediction onl 99.32
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 99.31
PRK11608326 pspF phage shock protein operon transcriptional ac 99.31
TIGR01817534 nifA Nif-specific regulatory protein. This model r 99.31
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 99.3
PRK08769319 DNA polymerase III subunit delta'; Validated 99.3
PRK05707328 DNA polymerase III subunit delta'; Validated 99.29
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.28
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 99.27
PTZ00111915 DNA replication licensing factor MCM4; Provisional 99.27
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.27
COG1221403 PspF Transcriptional regulators containing an AAA- 99.26
PRK07993334 DNA polymerase III subunit delta'; Validated 99.26
KOG1969 877 consensus DNA replication checkpoint protein CHL12 99.25
TIGR02329526 propionate_PrpR propionate catabolism operon regul 99.25
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 99.25
PRK05022509 anaerobic nitric oxide reductase transcription reg 99.23
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 99.23
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 99.22
PRK15424538 propionate catabolism operon regulatory protein Pr 99.22
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 99.21
PRK06871325 DNA polymerase III subunit delta'; Validated 99.21
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 99.2
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 99.19
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 99.17
KOG1942456 consensus DNA helicase, TBP-interacting protein [R 99.17
PHA02244383 ATPase-like protein 99.17
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 99.17
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.16
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 99.16
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 99.16
PRK11331459 5-methylcytosine-specific restriction enzyme subun 99.15
KOG0735 952 consensus AAA+-type ATPase [Posttranslational modi 99.15
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 99.14
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 99.14
PRK06964342 DNA polymerase III subunit delta'; Validated 99.1
COG0606490 Predicted ATPase with chaperone activity [Posttran 99.1
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 99.1
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 99.1
KOG0745564 consensus Putative ATP-dependent Clp-type protease 99.09
PRK06090319 DNA polymerase III subunit delta'; Validated 99.08
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 99.06
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 99.02
PRK13765 637 ATP-dependent protease Lon; Provisional 99.02
PRK09862506 putative ATP-dependent protease; Provisional 99.01
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 99.0
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 98.95
PF07726131 AAA_3: ATPase family associated with various cellu 98.93
PRK08699325 DNA polymerase III subunit delta'; Validated 98.93
PRK12377248 putative replication protein; Provisional 98.92
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.92
KOG2680454 consensus DNA helicase TIP49, TBP-interacting prot 98.92
KOG0736 953 consensus Peroxisome assembly factor 2 containing 98.91
PRK15115444 response regulator GlrR; Provisional 98.89
PRK05917290 DNA polymerase III subunit delta'; Validated 98.89
KOG0478804 consensus DNA replication licensing factor, MCM4 c 98.87
PRK08116268 hypothetical protein; Validated 98.84
PF03215 519 Rad17: Rad17 cell cycle checkpoint protein 98.83
PRK14700 300 recombination factor protein RarA; Provisional 98.81
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 98.81
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 98.79
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 98.78
smart00382148 AAA ATPases associated with a variety of cellular 98.77
PF0286153 Clp_N: Clp amino terminal domain; InterPro: IPR004 98.75
PF13173128 AAA_14: AAA domain 98.74
PRK08181269 transposase; Validated 98.74
COG1241682 MCM2 Predicted ATPase involved in replication cont 98.74
PRK07952244 DNA replication protein DnaC; Validated 98.74
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.69
PRK07276290 DNA polymerase III subunit delta'; Validated 98.67
COG3284606 AcoR Transcriptional activator of acetoin/glycerol 98.65
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 98.65
PRK06526254 transposase; Provisional 98.64
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.64
KOG1970 634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 98.64
COG1484254 DnaC DNA replication protein [DNA replication, rec 98.63
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 98.62
PRK05818261 DNA polymerase III subunit delta'; Validated 98.6
PRK07132299 DNA polymerase III subunit delta'; Validated 98.6
PF0286153 Clp_N: Clp amino terminal domain; InterPro: IPR004 98.59
KOG0480764 consensus DNA replication licensing factor, MCM6 c 98.59
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 98.59
COG3283511 TyrR Transcriptional regulator of aromatic amino a 98.59
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.58
PRK06835329 DNA replication protein DnaC; Validated 98.54
PRK09183259 transposase/IS protein; Provisional 98.49
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 98.48
PRK06921266 hypothetical protein; Provisional 98.47
PHA00729226 NTP-binding motif containing protein 98.47
KOG1514767 consensus Origin recognition complex, subunit 1, a 98.46
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 98.45
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 98.42
KOG2228408 consensus Origin recognition complex, subunit 4 [R 98.34
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 98.33
PRK08939306 primosomal protein DnaI; Reviewed 98.33
KOG0482721 consensus DNA replication licensing factor, MCM7 c 98.33
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 98.31
PF05729166 NACHT: NACHT domain 98.24
PRK15455 644 PrkA family serine protein kinase; Provisional 98.22
PRK06581263 DNA polymerase III subunit delta'; Validated 98.11
KOG0477854 consensus DNA replication licensing factor, MCM2 c 98.1
PF14516331 AAA_35: AAA-like domain 98.06
COG1618179 Predicted nucleotide kinase [Nucleotide transport 98.02
TIGR02688449 conserved hypothetical protein TIGR02688. Members 98.0
PRK08485206 DNA polymerase III subunit delta'; Validated 97.98
KOG1968 871 consensus Replication factor C, subunit RFC1 (larg 97.95
PF07693325 KAP_NTPase: KAP family P-loop domain; InterPro: IP 97.9
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 97.9
PF08298358 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi 97.9
KOG2543 438 consensus Origin recognition complex, subunit 5 [R 97.9
PRK10536262 hypothetical protein; Provisional 97.85
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.84
PF12780268 AAA_8: P-loop containing dynein motor region D4; I 97.84
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.8
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 97.79
KOG2170344 consensus ATPase of the AAA+ superfamily [General 97.79
PF10923416 DUF2791: P-loop Domain of unknown function (DUF279 97.78
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 97.77
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 97.77
COG1373 398 Predicted ATPase (AAA+ superfamily) [General funct 97.69
PTZ00202550 tuzin; Provisional 97.64
PHA02774613 E1; Provisional 97.61
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 97.58
COG4650531 RtcR Sigma54-dependent transcription regulator con 97.52
PRK04841 903 transcriptional regulator MalT; Provisional 97.5
COG0464 494 SpoVK ATPases of the AAA+ class [Posttranslational 97.47
cd01128249 rho_factor Transcription termination factor rho is 97.43
PRK04296190 thymidine kinase; Provisional 97.43
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.42
PRK09376416 rho transcription termination factor Rho; Provisio 97.41
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 97.35
PRK04132 846 replication factor C small subunit; Provisional 97.31
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 97.3
cd01124187 KaiC KaiC is a circadian clock protein primarily f 97.3
COG4088261 Predicted nucleotide kinase [Nucleotide transport 97.28
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 97.27
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 97.26
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 97.24
COG1067 647 LonB Predicted ATP-dependent protease [Posttransla 97.21
PRK00131175 aroK shikimate kinase; Reviewed 97.2
PRK13695174 putative NTPase; Provisional 97.18
PRK00625173 shikimate kinase; Provisional 97.17
PRK08118167 topology modulation protein; Reviewed 97.13
KOG0481729 consensus DNA replication licensing factor, MCM5 c 97.1
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 97.1
PRK14974336 cell division protein FtsY; Provisional 97.09
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 97.06
PRK13946184 shikimate kinase; Provisional 96.99
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.98
COG3899 849 Predicted ATPase [General function prediction only 96.97
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.97
PRK00771437 signal recognition particle protein Srp54; Provisi 96.95
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 96.93
COG4619223 ABC-type uncharacterized transport system, ATPase 96.93
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 96.93
PF01583156 APS_kinase: Adenylylsulphate kinase; InterPro: IPR 96.9
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 96.89
TIGR00767415 rho transcription termination factor Rho. Members 96.88
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 96.87
COG0703172 AroK Shikimate kinase [Amino acid transport and me 96.86
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 96.86
PRK07261171 topology modulation protein; Provisional 96.86
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.85
PRK06067234 flagellar accessory protein FlaH; Validated 96.82
TIGR01613304 primase_Cterm phage/plasmid primase, P4 family, C- 96.81
PRK08533230 flagellar accessory protein FlaH; Reviewed 96.81
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 96.81
TIGR02237209 recomb_radB DNA repair and recombination protein R 96.81
PRK06217183 hypothetical protein; Validated 96.78
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 96.77
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 96.77
PRK11823446 DNA repair protein RadA; Provisional 96.77
PRK12608380 transcription termination factor Rho; Provisional 96.77
PRK13947171 shikimate kinase; Provisional 96.73
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.72
PF05272198 VirE: Virulence-associated protein E; InterPro: IP 96.7
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 96.69
PRK13949169 shikimate kinase; Provisional 96.69
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.67
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 96.62
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 96.61
PRK05574340 holA DNA polymerase III subunit delta; Reviewed 96.6
TIGR03574249 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem 96.59
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 96.58
PRK13948182 shikimate kinase; Provisional 96.57
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 96.57
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 96.57
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 96.57
PRK03839180 putative kinase; Provisional 96.56
PF08433270 KTI12: Chromatin associated protein KTI12 ; InterP 96.55
PF10236309 DAP3: Mitochondrial ribosomal death-associated pro 96.54
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 96.52
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 96.5
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 96.5
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 96.49
PRK06547172 hypothetical protein; Provisional 96.48
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 96.48
PRK09361225 radB DNA repair and recombination protein RadB; Pr 96.45
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 96.44
cd03115173 SRP The signal recognition particle (SRP) mediates 96.43
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 96.43
COG0529197 CysC Adenylylsulfate kinase and related kinases [I 96.43
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 96.42
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 96.42
PRK05057172 aroK shikimate kinase I; Reviewed 96.42
PF1324576 AAA_19: Part of AAA domain 96.4
PF10443 431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 96.39
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 96.38
TIGR01448 720 recD_rel helicase, putative, RecD/TraA family. Thi 96.36
cd03216163 ABC_Carb_Monos_I This family represents the domain 96.33
PRK06762166 hypothetical protein; Provisional 96.33
PHA02624647 large T antigen; Provisional 96.32
PRK14532188 adenylate kinase; Provisional 96.3
TIGR01128302 holA DNA polymerase III, delta subunit. subunit ar 96.25
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 96.22
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.21
PRK03846198 adenylylsulfate kinase; Provisional 96.2
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 96.18
PF08303168 tRNA_lig_kinase: tRNA ligase kinase domain; InterP 96.18
PRK14530215 adenylate kinase; Provisional 96.18
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 96.17
PF01580205 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 96.17
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 96.16
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 96.16
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 96.15
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 96.14
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 96.14
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 96.14
COG4178604 ABC-type uncharacterized transport system, permeas 96.14
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 96.13
PRK14737186 gmk guanylate kinase; Provisional 96.13
KOG1808 1856 consensus AAA ATPase containing von Willebrand fac 96.12
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 96.12
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 96.11
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 96.11
PRK10867433 signal recognition particle protein; Provisional 96.1
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 96.09
smart00487201 DEXDc DEAD-like helicases superfamily. 96.08
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 96.08
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.08
COG1485367 Predicted ATPase [General function prediction only 96.07
PRK13833323 conjugal transfer protein TrbB; Provisional 96.06
PRK07452326 DNA polymerase III subunit delta; Validated 96.06
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 96.06
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 96.05
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.05
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 96.04
PRK13889 988 conjugal transfer relaxase TraA; Provisional 96.04
PRK05541176 adenylylsulfate kinase; Provisional 96.01
PRK09435332 membrane ATPase/protein kinase; Provisional 96.01
PRK13894319 conjugal transfer ATPase TrbB; Provisional 95.98
PRK13764602 ATPase; Provisional 95.97
PF01926116 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I 95.97
PRK06696223 uridine kinase; Validated 95.96
PRK13851344 type IV secretion system protein VirB11; Provision 95.95
cd03246173 ABCC_Protease_Secretion This family represents the 95.94
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 95.93
PRK14021 542 bifunctional shikimate kinase/3-dehydroquinate syn 95.91
PRK03731171 aroL shikimate kinase II; Reviewed 95.91
cd03114148 ArgK-like The function of this protein family is u 95.9
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 95.9
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 95.9
cd01852196 AIG1 AIG1 (avrRpt2-induced gene 1). This represent 95.88
KOG00551228 consensus Multidrug/pheromone exporter, ABC superf 95.88
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 95.88
PRK00889175 adenylylsulfate kinase; Provisional 95.86
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 95.82
TIGR02533486 type_II_gspE general secretory pathway protein E. 95.82
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 95.81
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 95.81
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 95.8
PLN02165334 adenylate isopentenyltransferase 95.8
PRK08099399 bifunctional DNA-binding transcriptional repressor 95.79
PRK14531183 adenylate kinase; Provisional 95.78
smart00534185 MUTSac ATPase domain of DNA mismatch repair MUTS f 95.75
TIGR00750300 lao LAO/AO transport system ATPase. Mutations have 95.72
PRK05629318 hypothetical protein; Validated 95.72
PRK102631355 DNA translocase FtsK; Provisional 95.72
PTZ00088229 adenylate kinase 1; Provisional 95.71
cd01394218 radB RadB. The archaeal protein radB shares simila 95.69
PRK14709469 hypothetical protein; Provisional 95.69
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 95.67
TIGR01447 586 recD exodeoxyribonuclease V, alpha subunit. This f 95.67
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 95.65
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 95.65
COG1703323 ArgK Putative periplasmic protein kinase ArgK and 95.65
PRK10875 615 recD exonuclease V subunit alpha; Provisional 95.64
PRK10436462 hypothetical protein; Provisional 95.64
PRK06585343 holA DNA polymerase III subunit delta; Reviewed 95.64
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 95.63
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 95.63
PRK05537568 bifunctional sulfate adenylyltransferase subunit 1 95.63
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 95.63
TIGR00174287 miaA tRNA isopentenyltransferase (miaA). Catalyzes 95.62
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 95.61
cd03287222 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS 95.61
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 95.61
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 95.61
COG0194191 Gmk Guanylate kinase [Nucleotide transport and met 95.59
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 95.56
COG5192 1077 BMS1 GTP-binding protein required for 40S ribosome 95.56
TIGR00064272 ftsY signal recognition particle-docking protein F 95.55
COG1066456 Sms Predicted ATP-dependent serine protease [Postt 95.55
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 95.54
PF13479213 AAA_24: AAA domain 95.54
COG1936180 Predicted nucleotide kinase (related to CMP and AM 95.53
smart00072184 GuKc Guanylate kinase homologues. Active enzymes c 95.53
PRK14528186 adenylate kinase; Provisional 95.53
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 95.52
TIGR00959428 ffh signal recognition particle protein. This mode 95.5
cd00071137 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. 95.49
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 95.49
PRK05973237 replicative DNA helicase; Provisional 95.47
PRK00091307 miaA tRNA delta(2)-isopentenylpyrophosphate transf 95.46
TIGR02012321 tigrfam_recA protein RecA. This model describes or 95.46
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 95.44
PF00406151 ADK: Adenylate kinase; InterPro: IPR000850 Adenyla 95.43
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 95.42
TIGR01069 771 mutS2 MutS2 family protein. Function of MutS2 is u 95.4
PRK13826 1102 Dtr system oriT relaxase; Provisional 95.39
PRK08154309 anaerobic benzoate catabolism transcriptional regu 95.39
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 95.39
KOG0479 818 consensus DNA replication licensing factor, MCM3 c 95.38
KOG0055 1228 consensus Multidrug/pheromone exporter, ABC superf 95.38
PF10662143 PduV-EutP: Ethanolamine utilisation - propanediol 95.37
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 95.37
PHA01747425 putative ATP-dependent protease 95.36
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 95.36
PLN02199303 shikimate kinase 95.31
PLN02840 421 tRNA dimethylallyltransferase 95.29
TIGR00455184 apsK adenylylsulfate kinase (apsK). Important resi 95.29
COG5245 3164 DYN1 Dynein, heavy chain [Cytoskeleton] 95.28
PRK04040188 adenylate kinase; Provisional 95.28
cd03284216 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr 95.28
PF07931174 CPT: Chloramphenicol phosphotransferase-like prote 95.26
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-70  Score=606.93  Aligned_cols=435  Identities=45%  Similarity=0.658  Sum_probs=386.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhccCCCC
Q 007723           84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPF  163 (591)
Q Consensus        84 ~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (591)
                      +||++++++|..|+.+|+.++|.+|++||||++|+.++.+..+|..+|++++.++..+...+.+.+..            
T Consensus         1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~------------   68 (786)
T COG0542           1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKV------------   68 (786)
T ss_pred             CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchHHHHHHcCCCHHHHHHHHHHHHhccCCC------------
Confidence            48999999999999999999999999999999999998888999999999999999999999988653            


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhhhccCCC
Q 007723          164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE  243 (591)
Q Consensus       164 ~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~~~~~~~  243 (591)
                       ... +.+|+.++++++.|..+|+.+|+.||+++|||+|++.++++.+.++|...|++...+.+ +...+.+....    
T Consensus        69 -~~~-~~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~----  141 (786)
T COG0542          69 -LGS-PYLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEE-LIEELRGGNEV----  141 (786)
T ss_pred             -CCC-CCCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHH-HHHHHhccccc----
Confidence             112 77899999999999999999999999999999999999999999999999999988744 44433221100    


Q ss_pred             CcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCc
Q 007723          244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG  323 (591)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvG  323 (591)
                                        .+.........|++|+.|||+.+|.+++||+|||++||++++++|+|+++||++|+|+||||
T Consensus       142 ------------------~~~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVG  203 (786)
T COG0542         142 ------------------DSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVG  203 (786)
T ss_pred             ------------------CCcccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCC
Confidence                              01112334478999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC
Q 007723          324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG  403 (591)
Q Consensus       324 KT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~  403 (591)
                      ||+++++||+++.++++|..+.+++++.+|++.+++|++|+|+||++++.+++++.+.++.||||||+|.++|+|++.. 
T Consensus       204 KTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-  282 (786)
T COG0542         204 KTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-  282 (786)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-
Confidence            9999999999999999999999999999999999999999999999999999999998899999999999999987621 


Q ss_pred             CCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcH
Q 007723          404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL  483 (591)
Q Consensus       404 ~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~  483 (591)
                        + ..|+.|+|+|.|++|+++||||||.+||++++++|++|.|||+.|.+.+|+.++...||+++..+|+.||++.|+|
T Consensus       283 --~-a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D  359 (786)
T COG0542         283 --G-AMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITD  359 (786)
T ss_pred             --c-ccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecH
Confidence              2 5899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhchhhH
Q 007723          484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDD  563 (591)
Q Consensus       484 ~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~  563 (591)
                      +++.+++.+|.||+++|++|||||||+|+||++.++... .|.+  +..+...+.+...++......+| +++.++.+..
T Consensus       360 ~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~--l~~~~~~~~~l~~e~~~~~~e~~-~~~k~~~~~~  435 (786)
T COG0542         360 EALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEE--LDELERELAQLEIEKEALEREQD-EKEKKLIDEI  435 (786)
T ss_pred             HHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcc--hhHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHH
Confidence            999999999999999999999999999999999999887 7765  44444444444455555555555 4444555443

>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>PRK14700 recombination factor protein RarA; Provisional Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes Back     alignment and domain information
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>PRK06581 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK08485 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] Back     alignment and domain information
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>PHA02774 E1; Provisional Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK13946 shikimate kinase; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>PRK05574 holA DNA polymerase III subunit delta; Reviewed Back     alignment and domain information
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] Back     alignment and domain information
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>PRK05057 aroK shikimate kinase I; Reviewed Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>PRK14532 adenylate kinase; Provisional Back     alignment and domain information
>TIGR01128 holA DNA polymerase III, delta subunit Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK03846 adenylylsulfate kinase; Provisional Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK14737 gmk guanylate kinase; Provisional Back     alignment and domain information
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1485 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK07452 DNA polymerase III subunit delta; Validated Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK09435 membrane ATPase/protein kinase; Provisional Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>PRK03731 aroL shikimate kinase II; Reviewed Back     alignment and domain information
>cd03114 ArgK-like The function of this protein family is unkown Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>PRK14531 adenylate kinase; Provisional Back     alignment and domain information
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>TIGR00750 lao LAO/AO transport system ATPase Back     alignment and domain information
>PRK05629 hypothetical protein; Validated Back     alignment and domain information
>PRK10263 DNA translocase FtsK; Provisional Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK14709 hypothetical protein; Provisional Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK06585 holA DNA polymerase III subunit delta; Reviewed Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>TIGR00174 miaA tRNA isopentenyltransferase (miaA) Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>smart00072 GuKc Guanylate kinase homologues Back     alignment and domain information
>PRK14528 adenylate kinase; Provisional Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PHA01747 putative ATP-dependent protease Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>PLN02199 shikimate kinase Back     alignment and domain information
>PLN02840 tRNA dimethylallyltransferase Back     alignment and domain information
>TIGR00455 apsK adenylylsulfate kinase (apsK) Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes Back     alignment and domain information
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
3pxg_A468 Structure Of Meca121 And Clpc1-485 Complex Length = 1e-90
3pxi_A 758 Structure Of Meca108:clpc Length = 758 1e-90
4hse_A397 Crystal Structure Of Clpb Nbd1 In Complex With Guan 5e-76
1qvr_A 854 Crystal Structure Analysis Of Clpb Length = 854 1e-75
1ksf_X 758 Crystal Structure Of Clpa, An Hsp100 Chaperone And 2e-75
2p65_A187 Crystal Structure Of The First Nucleotide Binding D 2e-55
1jbk_A195 Crystal Structure Of The First Nucelotide Binding D 2e-55
3fh2_A146 The Crystal Structure Of The Probable Atp-Dependent 3e-14
2y1r_A149 Structure Of Meca121 & Clpc N-Domain Complex Length 7e-14
2k77_A146 Nmr Solution Structure Of The Bacillus Subtilis Clp 7e-14
2y1q_A150 Crystal Structure Of Clpc N-Terminal Domain Length 2e-13
3fes_A145 Crystal Structure Of The Atp-Dependent Clp Protease 5e-09
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex Length = 468 Back     alignment and structure 
Iteration: 1

 Score =  330 bits (847), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 262/442 (59%), Gaps = 53/442 (11%)
Query: 81  VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
           +F RFTERA K +  +Q EA  LG + + T+H+LLGL+ E          GI   KA +A
Sbjct: 2   MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIAA-KALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
           +  +      ++ +    +G+  S    + ++   K+V E +++ +R  G++++  EHI 
Sbjct: 53  L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
           LGL    +G A RVL  LGV +N  A   V +L G                 N      A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSSAA 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
              S   T    L+    DLTA A E+ +DPVIGR  EIQR+I++L RRTKNNP+L+GE 
Sbjct: 153 GTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
           GVGKTAIAEGLA +I+  EVP  L  KR+M+LDMG      K RGE E R+  ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ 265
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
           +G++ILFID                   +D SN+LKPSL RGELQCI +TT DE+R   E
Sbjct: 266 AGNIILFID-----------------AAIDASNILKPSLARGELQCIGATTLDEYRKYIE 308
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
           KD AL RRFQP+ + +PS +++++IL GLR++YEAHH    T +AI AAV LS RYISDR
Sbjct: 309 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368
Query: 501 YLPDKAIDLVDEAGSRAHIELF 522
           +LPDKAIDL+DEAGS+  +  F
Sbjct: 369 FLPDKAIDLIDEAGSKVRLRSF 390
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc Length = 758 Back     alignment and structure
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium Chloride And Adp Length = 397 Back     alignment and structure
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb Length = 854 Back     alignment and structure
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator Of Clpap Protease: Structural Basis Of Differences In Function Of The Two Aaa+ Atpase Domains Length = 758 Back     alignment and structure
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium Vivax Length = 187 Back     alignment and structure
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain Of Clpb Length = 195 Back     alignment and structure
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent Protease (Heat Shock Protein) From Corynebacterium Glutamicum Length = 146 Back     alignment and structure
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex Length = 149 Back     alignment and structure
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N- Domain Length = 146 Back     alignment and structure
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain Length = 150 Back     alignment and structure
>pdb|3FES|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Clpc From Clostridium Difficile Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 1e-178
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 1e-171
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 1e-167
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 1e-135
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 1e-90
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 2e-88
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 5e-65
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 2e-34
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 1e-30
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 3e-28
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 6e-10
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 5e-11
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 1e-10
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 2e-10
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 3e-07
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 2e-05
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 5e-05
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 4e-04
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 Back     alignment and structure
 Score =  521 bits (1344), Expect = e-178
 Identities = 189/483 (39%), Positives = 267/483 (55%), Gaps = 59/483 (12%)

Query: 82  FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKARE 139
           F RFTERA K +  +Q EA  LG + + T+H+LLGL+ E            G+  +K ++
Sbjct: 3   FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQK 62

Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
            V S+               G+    +  + ++   K+V E +++ +R  G++++  EHI
Sbjct: 63  EVESLI--------------GRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHI 108

Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
            LGL    +G A RVL  LGV +N      +  L                         +
Sbjct: 109 LLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN-------------------ETGS 149

Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
           +A  +        L+    DLTA A E+ +DPVIGR  EIQR+I++L RRTKNNP+L+GE
Sbjct: 150 SAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGE 209

Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
            GVGKTAIAEGLA +I+  EVP  L  KR+M+LDMG      K RGE E R+  ++ EI+
Sbjct: 210 PGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIR 264

Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
           ++G++ILFID                   +D SN+LKPSL RGELQCI +TT DE+R   
Sbjct: 265 QAGNIILFIDA-----------------AIDASNILKPSLARGELQCIGATTLDEYRKYI 307

Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
           EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH    T +AI AAV LS RYISD
Sbjct: 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367

Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
           R+LPDKAIDL+DEAGS+  +  F      +   L +  D+  +E        E  + + L
Sbjct: 368 RFLPDKAIDLIDEAGSKVRLRSFTTPPNLKE--LEQKLDEVRKEKDAAVQSQEFEKAASL 425

Query: 560 KYD 562
           +  
Sbjct: 426 RDT 428
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Length = 468 Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Length = 195 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Length = 187 Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 Back     alignment and structure
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Length = 146 Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Length = 145 Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Length = 150 Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Length = 150 Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Length = 143 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Length = 412 Back     alignment and structure
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Length = 148 Back     alignment and structure
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Length = 148 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Length = 171 Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Length = 171 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 100.0
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 100.0
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 100.0
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 100.0
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 99.93
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 99.91
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 99.91
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 99.9
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.9
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.89
3pvs_A 447 Replication-associated recombination protein A; ma 99.88
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 99.88
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 99.87
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 99.86
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 99.86
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 99.86
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 99.85
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 99.85
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 99.85
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 99.85
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 99.84
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 99.84
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 99.84
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 99.84
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 99.83
2chq_A319 Replication factor C small subunit; DNA-binding pr 99.83
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 99.83
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 99.82
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 99.81
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 99.81
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 99.81
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 99.81
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.8
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 99.8
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 99.8
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 99.8
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 99.8
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.79
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 99.79
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 99.79
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.79
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 99.76
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 99.76
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.76
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 99.75
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 99.75
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 99.74
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.74
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.73
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 99.73
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 99.72
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.71
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 99.71
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.71
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 99.69
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 99.68
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 99.67
3bos_A242 Putative DNA replication factor; P-loop containing 99.66
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.66
2r62_A268 Cell division protease FTSH homolog; ATPase domain 99.66
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 99.66
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 99.64
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.64
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 99.64
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.63
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.62
1ojl_A304 Transcriptional regulatory protein ZRAR; response 99.62
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 99.62
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 99.61
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 99.61
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.61
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.6
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.6
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.6
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.59
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.58
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.55
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 99.53
2gno_A305 DNA polymerase III, gamma subunit-related protein; 99.53
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.51
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 99.5
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 99.5
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.48
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 99.46
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 99.43
3co5_A143 Putative two-component system transcriptional RES 99.42
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.38
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.35
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.32
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 99.19
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 99.16
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 99.13
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 99.12
3f8t_A506 Predicted ATPase involved in replication control, 99.1
2fna_A357 Conserved hypothetical protein; structural genomic 99.01
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 98.9
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 98.87
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 98.78
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 98.71
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 98.69
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 98.65
2qgz_A308 Helicase loader, putative primosome component; str 98.63
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 98.61
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 98.6
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.55
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 98.44
1tue_A212 Replication protein E1; helicase, replication, E1E 98.35
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 98.3
3upu_A 459 ATP-dependent DNA helicase DDA; RECA-like domain, 98.26
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 98.1
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 98.07
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 98.03
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 98.02
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 97.95
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 97.91
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 97.87
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 97.77
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 97.69
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 97.66
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 97.66
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 97.41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 97.35
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 97.29
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 97.28
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 97.13
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.12
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 97.1
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.09
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 97.01
2cvh_A220 DNA repair and recombination protein RADB; filamen 96.98
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 96.9
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 96.76
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 96.66
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 96.64
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 96.62
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.56
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 96.55
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 96.53
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 96.53
1w36_D 608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.49
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 96.48
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 96.47
1via_A175 Shikimate kinase; structural genomics, transferase 96.46
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 96.42
2vli_A183 Antibiotic resistance protein; transferase, tunica 96.41
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 96.4
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 96.39
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 96.35
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 96.35
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 96.34
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 96.33
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 96.33
2z43_A324 DNA repair and recombination protein RADA; archaea 96.32
4a74_A231 DNA repair and recombination protein RADA; hydrola 96.3
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 96.28
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 96.24
1kag_A173 SKI, shikimate kinase I; transferase, structural g 96.23
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 96.23
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 96.16
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.14
1xp8_A366 RECA protein, recombinase A; recombination, radior 96.12
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.12
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 96.11
1u94_A356 RECA protein, recombinase A; homologous recombinat 96.1
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 96.1
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 96.1
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 96.09
3lxw_A247 GTPase IMAP family member 1; immunity, structural 96.04
3lxx_A239 GTPase IMAP family member 4; structural genomics c 96.03
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 96.03
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.01
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 96.0
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 95.99
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 95.99
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 95.98
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 95.94
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 95.92
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 95.91
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 95.88
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 95.84
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 95.84
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 95.83
2r6a_A454 DNAB helicase, replicative helicase; replication, 95.82
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 95.82
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 95.79
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 95.77
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 95.76
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 95.76
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 95.76
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 95.75
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 95.74
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 95.73
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 95.72
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 95.71
3b6e_A216 Interferon-induced helicase C domain-containing P; 95.71
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 95.69
3tlx_A243 Adenylate kinase 2; structural genomics, structura 95.68
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 95.67
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 95.67
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 95.67
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 95.63
3eph_A 409 TRNA isopentenyltransferase; transferase, alternat 95.62
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 95.61
3p32_A355 Probable GTPase RV1496/MT1543; structural genomics 95.59
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 95.59
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 95.58
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 95.57
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 95.55
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 95.55
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 95.51
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 95.49
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 95.48
2eyu_A261 Twitching motility protein PILT; pilus retraction 95.45
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 95.44
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 95.43
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 95.43
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 95.4
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 95.39
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 95.38
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.37
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 95.37
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 95.34
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 95.32
1vma_A306 Cell division protein FTSY; TM0570, structural gen 95.28
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 95.27
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 95.24
3cr8_A552 Sulfate adenylyltranferase, adenylylsulfate kinase 95.23
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 95.22
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 95.2
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 95.19
2ewv_A372 Twitching motility protein PILT; pilus retraction 95.17
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 95.13
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 95.11
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 95.09
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 95.05
2axn_A 520 6-phosphofructo-2-kinase/fructose-2,6- biphosphata 95.05
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 95.05
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 95.03
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 95.03
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 95.01
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 94.97
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 94.95
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 94.93
2wsm_A221 Hydrogenase expression/formation protein (HYPB); m 94.9
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 94.88
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 94.88
2j37_W 504 Signal recognition particle 54 kDa protein (SRP54) 94.82
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 94.82
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 94.76
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 94.74
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 94.73
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 94.7
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 94.68
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 94.64
2hf9_A226 Probable hydrogenase nickel incorporation protein 94.6
3ice_A422 Transcription termination factor RHO; transcriptio 94.6
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 94.54
1svi_A195 GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro 94.53
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 94.5
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 94.48
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 94.46
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 94.45
3pqc_A195 Probable GTP-binding protein ENGB; rossmann fold, 94.4
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 94.35
2xxa_A433 Signal recognition particle protein; protein trans 94.28
3r20_A233 Cytidylate kinase; structural genomics, seattle st 94.26
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 94.23
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 94.23
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 94.2
2oca_A 510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 94.19
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 94.19
1gm5_A 780 RECG; helicase, replication restart; HET: DNA ADP; 94.18
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 94.15
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 94.12
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 94.03
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 94.01
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 94.01
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 93.98
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 93.97
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 93.94
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 93.94
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 93.93
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 93.93
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 93.91
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 93.9
4b3f_X 646 DNA-binding protein smubp-2; hydrolase, helicase; 93.89
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 93.87
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 93.87
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 93.86
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 93.85
1g8f_A511 Sulfate adenylyltransferase; alpha-beta protein, b 93.83
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 93.81
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 93.81
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 93.79
2h92_A219 Cytidylate kinase; rossmann fold, transferase; HET 93.76
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 93.76
3io5_A333 Recombination and repair protein; storage dimer, i 93.74
3bor_A237 Human initiation factor 4A-II; translation initiat 93.73
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 93.66
1r8s_A164 ADP-ribosylation factor 1; protein transport/excha 93.64
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 93.62
1ltq_A301 Polynucleotide kinase; phosphatase, alpha/beta, P- 93.56
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 93.54
2gks_A546 Bifunctional SAT/APS kinase; transferase, sulfuryl 93.54
1zj6_A187 ADP-ribosylation factor-like protein 5; ARL, GTP-b 93.53
1bif_A 469 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; 93.52
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 93.52
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 93.51
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 93.5
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 93.48
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 93.43
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 93.4
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 93.33
1zd9_A188 ADP-ribosylation factor-like 10B; transport protei 93.3
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 93.3
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 93.27
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 93.21
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 93.19
2f6r_A281 COA synthase, bifunctional coenzyme A synthase; 18 93.19
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 93.17
1p9r_A418 General secretion pathway protein E; bacterial typ 93.17
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 93.14
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 93.14
1xjc_A169 MOBB protein homolog; structural genomics, midwest 93.08
4dhe_A223 Probable GTP-binding protein ENGB; melioidosis, RA 93.06
1nrj_B218 SR-beta, signal recognition particle receptor beta 93.03
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 93.02
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 93.0
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 92.98
1m8p_A573 Sulfate adenylyltransferase; rossmann fold, phosph 92.98
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 92.83
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 92.83
2fh5_B214 SR-beta, signal recognition particle receptor beta 92.81
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 92.78
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 92.75
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 92.73
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 92.67
3h1t_A 590 Type I site-specific restriction-modification syst 92.66
2wji_A165 Ferrous iron transport protein B homolog; membrane 92.65
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 92.64
1moz_A183 ARL1, ADP-ribosylation factor-like protein 1; GTP- 92.59
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 92.57
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 92.56
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 92.55
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 92.54
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 92.51
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 92.48
3iby_A256 Ferrous iron transport protein B; G protein, G dom 92.47
2ged_A193 SR-beta, signal recognition particle receptor beta 92.44
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 92.43
3kta_A182 Chromosome segregation protein SMC; structural mai 92.42
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 92.4
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 92.38
1x6v_B 630 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 92.37
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 92.37
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 92.36
2xtp_A260 GTPase IMAP family member 2; immune system, G prot 92.34
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 92.29
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 92.29
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 92.27
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 92.25
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 92.22
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 92.17
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 92.16
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 92.13
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 92.12
4gzl_A204 RAS-related C3 botulinum toxin substrate 1; rossma 92.1
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 92.09
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 92.09
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 92.05
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 92.03
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 91.95
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 91.94
1g16_A170 RAS-related protein SEC4; G protein RAB, signaling 91.91
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 91.9
2p67_A341 LAO/AO transport system kinase; ARGK, structural G 91.85
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 91.84
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 91.84
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 91.83
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 91.81
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 91.79
2erx_A172 GTP-binding protein DI-RAS2; GTP hydrolysis, trans 91.77
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 91.77
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 91.77
1ky3_A182 GTP-binding protein YPT7P; vesicular traffic, GTP 91.77
3bc1_A195 RAS-related protein RAB-27A; RAB27, GTPase, RAB, s 91.77
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 91.75
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 91.64
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 91.57
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 91.56
1upt_A171 ARL1, ADP-ribosylation factor-like protein 1; hydr 91.54
2gk6_A 624 Regulator of nonsense transcripts 1; UPF1, helicas 91.54
1sgw_A214 Putative ABC transporter; structural genomics, P p 91.52
2qtf_A364 Protein HFLX, GTP-binding protein; beta-alpha-barr 91.49
3i5x_A 563 ATP-dependent RNA helicase MSS116; protein-RNA com 91.47
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 91.47
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 91.46
3con_A190 GTPase NRAS; structural genomics consortium, SGC, 91.45
2fn4_A181 P23, RAS-related protein R-RAS; GDP/GTP binding, G 91.44
3fdi_A201 Uncharacterized protein; cytidylate kinase like pr 91.41
3tw8_B181 RAS-related protein RAB-35; longin domain, RAB GTP 91.4
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 91.4
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 91.4
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 91.4
1z0f_A179 RAB14, member RAS oncogene family; RAB GTPase, ves 91.39
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 91.38
2oil_A193 CATX-8, RAS-related protein RAB-25; G-protein, GDP 91.36
2y8e_A179 RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti 91.33
2hxs_A178 RAB-26, RAS-related protein RAB-28; GTPase, signal 91.32
1wp9_A 494 ATP-dependent RNA helicase, putative; ATPase, DNA 91.32
1b0u_A262 Histidine permease; ABC transporter, transport pro 91.28
1m7b_A184 RND3/RHOE small GTP-binding protein; small GTPase, 91.27
2a9k_A187 RAS-related protein RAL-A; bacterial ADP-ribosyltr 91.26
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 91.25
2og2_A359 Putative signal recognition particle receptor; nuc 91.21
3v9p_A227 DTMP kinase, thymidylate kinase; ssgcid, STRU geno 91.17
2g6b_A180 RAS-related protein RAB-26; G-protein, GTP analogu 91.17
4ag6_A392 VIRB4 ATPase, type IV secretory pathway VIRB4 comp 91.17
3kkq_A183 RAS-related protein M-RAS; GTP-binding, GTPase, si 91.16
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 91.14
1g6h_A257 High-affinity branched-chain amino acid transport 91.13
2cxx_A190 Probable GTP-binding protein ENGB; structural geno 91.11
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 91.08
2efe_B181 Small GTP-binding protein-like; GEF, GTPase, VPS9, 91.06
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 91.05
2bme_A186 RAB4A, RAS-related protein RAB4A; GTP-binding prot 91.02
1m2o_B190 GTP-binding protein SAR1, GTP binding protein; zin 91.02
1yrb_A262 ATP(GTP)binding protein; GTPase, P-loop, rossman f 91.0
2atv_A196 RERG, RAS-like estrogen-regulated growth inhibitor 91.0
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 90.99
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 90.96
3bwd_D182 RAC-like GTP-binding protein ARAC6; G domain, cyto 90.96
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 90.95
1ji0_A240 ABC transporter; ATP binding protein, structural g 90.93
3ihw_A184 Centg3; RAS, centaurin, GTPase, structural genomic 90.93
3clv_A208 RAB5 protein, putative; malaria, GTPase, structura 90.92
1mh1_A186 RAC1; GTP-binding, GTPase, small G-protein, RHO fa 90.91
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 90.89
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 90.89
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 90.87
2ocp_A241 DGK, deoxyguanosine kinase; protein-nucleotide com 90.86
2bov_A206 RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, 90.86
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 90.85
2gf9_A189 RAS-related protein RAB-3D; G-protein, structural 90.85
3t1o_A198 Gliding protein MGLA; G domain containing protein, 90.83
2cjw_A192 GTP-binding protein GEM; nucleotide-binding, small 90.82
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 90.8
3gmt_A230 Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle 90.8
3ch4_B202 Pmkase, phosphomevalonate kinase; parallel beta-sh 90.78
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 90.77
2v6i_A 431 RNA helicase; membrane, hydrolase, transmembrane, 90.76
2iwr_A178 Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi 90.74
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 90.74
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 90.73
3c5c_A187 RAS-like protein 12; GDP, GTPase, structural genom 90.72
2oap_1511 GSPE-2, type II secretion system protein; hexameri 90.71
2ghi_A260 Transport protein; multidrug resistance protein, M 90.7
1z63_A 500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 90.68
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 90.67
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 90.67
2dby_A368 GTP-binding protein; GDP, structural genomics, NPP 90.63
1ksh_A186 ARF-like protein 2; small GTPase, small GTP-bindin 90.61
2a5j_A191 RAS-related protein RAB-2B; GTPase, signal transdu 90.6
3tkl_A196 RAS-related protein RAB-1A; vesicle trafficking, p 90.58
3t5g_A181 GTP-binding protein RHEB; immunoglobulin-like beta 90.56
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 90.56
1fzq_A181 ADP-ribosylation factor-like protein 3; protein-GD 90.55
3reg_A194 RHO-like small GTPase; cytoskeleton, nucleotide-bi 90.55
1z06_A189 RAS-related protein RAB-33B; RAB GTPase, RAB33B GT 90.55
3tqf_A181 HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co 90.53
3iev_A308 GTP-binding protein ERA; ERA, GTPase, KH domain, a 90.53
1x3s_A195 RAS-related protein RAB-18; GTPase, GNP, structura 90.49
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 90.48
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 90.45
2fg5_A192 RAB-22B, RAS-related protein RAB-31; G-protein, GT 90.44
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 90.44
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 90.44
3dz8_A191 RAS-related protein RAB-3B; GDP, GTPase, structura 90.44
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 90.42
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 90.42
1vg8_A207 RAS-related protein RAB-7; GTP-binding protein, pr 90.41
2p5s_A199 RAS and EF-hand domain containing; G-protein, RAB, 90.41
1zbd_A203 Rabphilin-3A; G protein, effector, RABCDR, synapti 90.4
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 90.39
4f4c_A1321 Multidrug resistance protein PGP-1; ABC transporte 90.37
1f2t_A149 RAD50 ABC-ATPase; DNA double-strand break repair, 90.31
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 90.28
2www_A349 Methylmalonic aciduria type A protein, mitochondri 90.27
3cbq_A195 GTP-binding protein REM 2; FLJ38964A, structural g 90.26
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 90.25
2bcg_Y206 Protein YP2, GTP-binding protein YPT1; RABGTPase, 90.22
3oes_A201 GTPase rhebl1; small GTPase, structural genomics, 90.2
4tmk_A213 Protein (thymidylate kinase); ATP:DTMP phosphotran 90.19
1g29_1372 MALK, maltose transport protein MALK; ATPase, acti 90.17
2gf0_A199 GTP-binding protein DI-RAS1; GDP/GTP binding, GTP 90.15
2ew1_A201 RAS-related protein RAB-30; G-protein, GTP analogu 90.12
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 90.11
3tmk_A216 Thymidylate kinase; phosphotransferase; HET: T5A; 90.1
3d31_A348 Sulfate/molybdate ABC transporter, ATP-binding pro 90.09
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 90.07
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=4.5e-62  Score=532.84  Aligned_cols=430  Identities=44%  Similarity=0.692  Sum_probs=367.9

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723           80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA  157 (591)
Q Consensus        80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~  157 (591)
                      |||++||++++++|..|+.+|+++||++|+|||||+|||.++++  ..+|..+|+|++.++.++...++..+..      
T Consensus         1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~------   74 (468)
T 3pxg_A            1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM------   74 (468)
T ss_dssp             --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT------
T ss_pred             CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC------
Confidence            58999999999999999999999999999999999999999877  7899999999999999999887765421      


Q ss_pred             ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhh
Q 007723          158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL  237 (591)
Q Consensus       158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~  237 (591)
                              ...++||+.++++|+.|..+|+++|+.+|+++|||+||++++++.+.++|.++|++.+.+++.+...+++..
T Consensus        75 --------~~~~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~  146 (468)
T 3pxg_A           75 --------SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE  146 (468)
T ss_dssp             --------CSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCC
T ss_pred             --------CCCCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCc
Confidence                    234789999999999999999999999999999999999999999999999999999999988765442110


Q ss_pred             hccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEe
Q 007723          238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL  317 (591)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~  317 (591)
                           ...           ..   .+...+...+.|++|+.+|++++++++|+++||++++++++++++.++.++|+||+
T Consensus       147 -----~~~-----------~~---~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~  207 (468)
T 3pxg_A          147 -----TGS-----------SA---AGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI  207 (468)
T ss_dssp             -----TTC-------------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred             -----ccc-----------cc---cCcCCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEE
Confidence                 000           00   00112334678999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcC
Q 007723          318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS  397 (591)
Q Consensus       318 GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~  397 (591)
                      ||||||||++|+++|+.+.++.+|..+.+..++.+|++     ..+.|+++.+++.+++.+...+++|||||    .   
T Consensus       208 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~---  275 (468)
T 3pxg_A          208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID----A---  275 (468)
T ss_dssp             SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC----C---
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchHHHHHHHHHHHHHhcCCeEEEEe----C---
Confidence            99999999999999999999999999999999999876     45788888899999999988888999999    1   


Q ss_pred             CCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhc
Q 007723          398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH  477 (591)
Q Consensus       398 ~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~  477 (591)
                                ..+++|.|++.|+++.+++|++||.++|++.+.++++|.+||++|.|.+|+.+++..||+.++.+|+.+|
T Consensus       276 ----------~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~  345 (468)
T 3pxg_A          276 ----------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH  345 (468)
T ss_dssp             ------------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred             ----------chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhc
Confidence                      4467899999999999999999999999988999999999999999999999999999999999998999


Q ss_pred             CCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHh
Q 007723          478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS  557 (591)
Q Consensus       478 ~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~  557 (591)
                      ++.++++++.+++.++.+|+.++.+|+++++++|+|++++++.....|.+  +.++...++....++..++..+||+++.
T Consensus       346 ~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~--i~~l~~~i~~l~~~~~~~~~~~d~~~~~  423 (468)
T 3pxg_A          346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN--LKELEQKLDEVRKEKDAAVQSQEFEKAA  423 (468)
T ss_dssp             SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS--THHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchH--HHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence            99999999999999999999999999999999999999999998888877  6777777777777778889999999999


Q ss_pred             hchhhHhhh
Q 007723          558 RLKYDDVVA  566 (591)
Q Consensus       558 ~~~~~~~~~  566 (591)
                      +++++..+.
T Consensus       424 ~l~~~~~~~  432 (468)
T 3pxg_A          424 SLRDTEQRL  432 (468)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998766553
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Back     alignment and structure
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Back     alignment and structure
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Back     alignment and structure
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Back     alignment and structure
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Back     alignment and structure
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Back     alignment and structure
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Back     alignment and structure
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Back     alignment and structure
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} Back     alignment and structure
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Back     alignment and structure
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Back     alignment and structure
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Back     alignment and structure
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Back     alignment and structure
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Back     alignment and structure
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Back     alignment and structure
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Back     alignment and structure
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Back     alignment and structure
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Back     alignment and structure
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Back     alignment and structure
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Back     alignment and structure
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Back     alignment and structure
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Back     alignment and structure
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* Back     alignment and structure
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Back     alignment and structure
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} Back     alignment and structure
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Back     alignment and structure
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Back     alignment and structure
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Back     alignment and structure
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Back     alignment and structure
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Back     alignment and structure
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Back     alignment and structure
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Back     alignment and structure
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Back     alignment and structure
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Back     alignment and structure
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 591
d1qvra2387 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus 9e-98
d1r6bx2268 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A 2e-93
d1jbka_195 c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia col 2e-71
d1w44a_321 c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta 2e-35
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 6e-28
d1khya_139 a.174.1.1 (A:) N-terminal domain of ClpB (heat sho 2e-16
d1khya_139 a.174.1.1 (A:) N-terminal domain of ClpB (heat sho 6e-04
d1fnna2276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 8e-16
d1qvra1145 a.174.1.1 (A:4-148) N-terminal domain of ClpB (hea 8e-11
d1k6ka_142 a.174.1.1 (A:) N-terminal, ClpS-binding domain of 1e-10
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 9e-06
d1sxjd2237 c.37.1.20 (D:26-262) Replication factor C2 {Baker' 6e-05
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 2e-04
d1ny5a2247 c.37.1.20 (A:138-384) Transcriptional activator si 0.001
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score =  301 bits (771), Expect = 9e-98
 Identities = 145/257 (56%), Positives = 187/257 (72%), Gaps = 7/257 (2%)

Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
           ALEQ+ +DLT  A+E  +DPVIGR+ EI+R+IQIL RRTKNNP+L+GE GVGKTAI EGL
Sbjct: 4   ALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 63

Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDE 390
           A RIV+ +VP  L  KRI+SL MG L+AGAK RGE E R+  +I E+ +S G+VILFIDE
Sbjct: 64  AQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE 123

Query: 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450
           +HT++G+     G     +D  N+LKP+L RGEL+ I +TT DE+R + EKD AL RRFQ
Sbjct: 124 LHTVVGA-----GKAEGAVDAGNMLKPALARGELRLIGATTLDEYR-EIEKDPALERRFQ 177

Query: 451 PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510
           PV + EP+ E+ + IL GL+EKYE HH  + +  AI AA  LS RYI++R LPDKAIDL+
Sbjct: 178 PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLI 237

Query: 511 DEAGSRAHIELFKRKKE 527
           DEA +R  + L    +E
Sbjct: 238 DEAAARLRMALESAPEE 254
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Length = 139 Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Length = 139 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Length = 142 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 100.0
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 100.0
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 100.0
d1khya_139 N-terminal domain of ClpB (heat shock protein F84. 99.89
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.88
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.88
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.87
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.87
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 99.86
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.86
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 99.86
d1k6ka_142 N-terminal, ClpS-binding domain of ClpA, an Hsp100 99.85
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.85
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.83
d1qvra1145 N-terminal domain of ClpB (heat shock protein F84. 99.82
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.8
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.8
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.77
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.77
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 99.75
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.68
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.68
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.68
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 99.62
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.62
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 99.59
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.55
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.54
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.48
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.45
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 99.32
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 99.26
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 99.16
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.85
d1khya_139 N-terminal domain of ClpB (heat shock protein F84. 98.51
d1qvra1145 N-terminal domain of ClpB (heat shock protein F84. 98.5
d1svma_362 Papillomavirus large T antigen helicase domain {Si 98.41
d1k6ka_142 N-terminal, ClpS-binding domain of ClpA, an Hsp100 98.25
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 98.25
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.13
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 97.89
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.66
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.61
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.54
d1tuea_205 Replication protein E1 helicase domain {Human papi 97.54
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 97.33
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 97.31
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 97.29
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 97.22
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 97.15
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 97.1
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 97.1
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 97.07
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 97.0
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 97.0
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 96.99
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.93
d2qy9a2211 GTPase domain of the signal recognition particle r 96.87
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 96.86
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.82
d1okkd2207 GTPase domain of the signal recognition particle r 96.79
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.78
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.68
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.67
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 96.66
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.66
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.64
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 96.64
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 96.59
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 96.59
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 96.58
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.54
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 96.53
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 96.52
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 96.47
d1vmaa2213 GTPase domain of the signal recognition particle r 96.47
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 96.45
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 96.35
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 96.35
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 96.35
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 96.34
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 96.28
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 96.25
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 96.21
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 96.21
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 96.2
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 96.0
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 95.96
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 95.95
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 95.92
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 95.91
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 95.84
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 95.76
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 95.74
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 95.71
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 95.64
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 95.49
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 95.46
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 95.45
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 95.4
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 95.37
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 95.34
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 95.23
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 95.22
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 95.2
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 95.18
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 95.13
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 94.97
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 94.82
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 94.72
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 94.61
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 94.55
d2fh5b1207 Signal recognition particle receptor beta-subunit 94.46
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 94.45
d2hyda1255 Putative multidrug export ATP-binding/permease pro 94.34
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 94.21
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 94.11
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 93.95
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 93.92
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 93.91
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 93.86
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 93.8
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 93.76
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 93.61
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 93.56
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 93.54
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 93.53
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 93.46
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 93.42
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 93.34
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 93.34
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 93.28
d1nrjb_209 Signal recognition particle receptor beta-subunit 93.24
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 93.23
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 93.17
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 93.17
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 93.14
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 93.08
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 93.03
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 92.95
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 92.91
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 92.76
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 92.71
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 92.65
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 92.64
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 92.6
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 92.58
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 92.55
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 92.54
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 92.53
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 92.47
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 92.43
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 92.35
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 92.34
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 92.32
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 92.27
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 92.27
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 92.2
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 92.17
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 92.17
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 92.17
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 92.16
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 92.14
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 92.08
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 92.04
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 92.01
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 92.01
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 91.99
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 91.96
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 91.95
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 91.95
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 91.95
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 91.93
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 91.83
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 91.82
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 91.81
d2awna2232 Maltose transport protein MalK, N-terminal domain 91.79
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 91.76
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 91.75
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 91.73
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 91.67
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 91.66
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 91.63
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 91.56
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 91.44
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 91.42
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 91.39
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 91.39
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 91.36
d1g2912240 Maltose transport protein MalK, N-terminal domain 91.34
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 91.29
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 91.27
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 91.22
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 91.2
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 91.11
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 91.08
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 91.03
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 90.93
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 90.89
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 90.86
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 90.84
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 90.78
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 90.76
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 90.58
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 90.56
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 90.45
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 90.38
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 90.35
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 90.34
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 90.26
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 90.2
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 90.11
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 90.04
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 89.98
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 89.65
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 89.64
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 89.63
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 89.61
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 89.58
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 89.56
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 89.05
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 89.0
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 88.72
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 88.65
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 88.63
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 88.48
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 88.47
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 88.45
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 88.25
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 88.17
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 88.16
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 88.15
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 87.86
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 87.86
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 87.81
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 87.7
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 87.64
d2c78a3204 Elongation factor Tu (EF-Tu), N-terminal (G) domai 87.58
d1e9ra_ 433 Bacterial conjugative coupling protein TrwB {Esche 87.42
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 87.42
d1xpua3289 Transcription termination factor Rho, ATPase domai 87.36
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 87.34
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 87.32
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 87.3
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 87.28
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 87.15
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 87.11
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 87.11
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 87.09
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 86.77
d1g8fa3122 ATP sulfurylase C-terminal domain {Baker's yeast ( 86.75
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 86.75
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 86.47
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 86.3
d1fx0a3276 Central domain of alpha subunit of F1 ATP synthase 86.01
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 85.97
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 85.77
d1tq4a_400 Interferon-inducible GTPase {Mouse (Mus musculus) 85.58
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 85.02
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 84.68
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 83.88
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 83.51
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 82.43
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 82.32
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 82.26
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 81.86
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 81.58
d1w1wa_ 427 Smc head domain {Baker's yeast (Saccharomyces cere 80.57
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.7e-49  Score=417.15  Aligned_cols=252  Identities=58%  Similarity=0.881  Sum_probs=214.7

Q ss_pred             chHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE
Q 007723          270 ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI  349 (591)
Q Consensus       270 ~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~  349 (591)
                      +..|++||+|||++++.+.++++|||++++++++++|+|++++|++|+||||||||++++.||+++..+++|..+.++++
T Consensus         2 ~~~l~~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i   81 (387)
T d1qvra2           2 YNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI   81 (387)
T ss_dssp             CSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEe
Q 007723          350 MSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA  428 (591)
Q Consensus       350 ~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~  428 (591)
                      +.+|++.+++|++++|+|+++++.++.++... ++.||||||+|.|++.|..     +++.++.|+|+|+|++|.++|||
T Consensus        82 ~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~-----~g~~d~a~~Lkp~L~rg~~~~I~  156 (387)
T d1qvra2          82 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA-----EGAVDAGNMLKPALARGELRLIG  156 (387)
T ss_dssp             EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHHTTCCCEEE
T ss_pred             EEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCC-----CCcccHHHHHHHHHhCCCcceee
Confidence            99999999999999999999999999998876 4789999999999988754     34688999999999999999999


Q ss_pred             cCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHH
Q 007723          429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID  508 (591)
Q Consensus       429 att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~  508 (591)
                      +||+++|+. ++.|++|.|||++|.|.+|+.++...||+.+..+|+.+|++.|+++++..++.+|.||++++++|||||+
T Consensus       157 ~tT~~ey~~-~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAid  235 (387)
T d1qvra2         157 ATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID  235 (387)
T ss_dssp             EECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred             ecCHHHHHH-hcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHH
Confidence            999999986 6889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHhhhhhhccchh
Q 007723          509 LVDEAGSRAHIELFKRKKE  527 (591)
Q Consensus       509 lld~a~a~~~~~~~~~~~~  527 (591)
                      +||+||++.++.....|.+
T Consensus       236 lld~a~a~~~i~~~s~P~e  254 (387)
T d1qvra2         236 LIDEAAARLRMALESAPEE  254 (387)
T ss_dssp             HHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHhhccCCcHH
Confidence            9999999999988888775
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure