Citrus Sinensis ID: 007736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
Protein Sequence
MTELPQAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHcccccccccccccEEHccEEEEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtelpqaqgktlpdawdykgrpaersktggwtsaAMILGGEACERLTTLGIAVNLVTYLTGtmhlgnasaanTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTIStiipslrppkcnlnhgqsciqaSGMQLVVLYIALYLTALgtgglkssvsgfgsdqfddsdpqernqmtnFFNWFFFFISIGSLAAVTVLVYIQDNlgrewgygICACAIVFGLVVFLSGtrryrfkklvgspltqIASVFVVAWRkrhldlpsdpsmffniddipvegkktkqrlphtkqfrfldkaaifkdsdmsnstTVVINKWnlatltdvEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMnrhigsfeipgaslTFFFVGSIlltvpvydriIVPIarkvfktpqgltplqriGVGLVLSIFAMVAAALCEIKRLRAArshgltndptaeiplsvfwlVPQFFLVGAGEAFTYIGQLDFFLrecpkgmktmstgLFLSTLSLGFFVSSLLVSLVHKvtgdkkpwladnlnqgrlyDFYWLLAILSALNFVIYLAFARWYVYKdkrlaeegieleepepach
Flexible Loop (DISEMBL)
mtelpqaqgktlpdawdykgrpaersktggwtSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFkklvgspltqiASVFVVAWRKRHldlpsdpsmffnIDDIPvegkktkqrlphtkqfrfldkaaifkdsdmsnsttvvinkwnlatltdveeVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARkvfktpqgltpLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEgieleepepach
Low Complexity Region (SEG)
MTELPQAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVtiltistiipslRPPKCNLNHGQSCIQASGMQLVVLYIalyltalgtgglKssvsgfgsdqfddsdPQERNQMTnffnwffffISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMstglflstlslgffvssllvslvHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRlaeegieleepepaCH
Disordered region (IsUnstruct)
****************************GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGL**********************MTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVE*******LPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRL***************
Disordered Region (DISOPRED)
***************WDYKGRPA*****GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKC***********SGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDD***********LPHTKQFRFLDKAA******************NLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWY**********************
Disordered Region (DISEMBL)
**********TLPDAWDYKG*********GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIE*********
Disordered Region (DISPRO)
********GKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDK*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTELPQAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	591	2.2.26 [Sep-21-2011]
Q05085	590	Nitrate transporter 1.1 O	yes	no	0.981	0.983	0.671	0.0
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.920	0.942	0.596	1e-179
Q9LVE0	590	Nitrate transporter 1.3 O	no	no	0.910	0.911	0.542	1e-162
Q9LFB8	570	Peptide transporter PTR5	no	no	0.923	0.957	0.463	1e-143
Q9M390	570	Peptide transporter PTR1	no	no	0.925	0.959	0.454	1e-141
P46032	585	Peptide transporter PTR2	no	no	0.928	0.938	0.434	1e-131
Q9SX20	596	Probable nitrite transpor	no	no	0.945	0.937	0.446	1e-126
Q93Z20	590	Probable peptide/nitrate	no	no	0.896	0.898	0.418	1e-122
Q93VV5	591	Probable peptide/nitrate	no	no	0.925	0.925	0.415	1e-121
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.945	0.960	0.383	1e-114

>sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/591 (67%), Positives = 484/591 (81%), Gaps = 11/591 (1%)

Query: 3   ELPQAQGKT-LPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTG 61
            LP+ +    L DAWD++GRPA+RSKTGGW SAAMIL  EA ERLTTLGI VNLVTYLTG
Sbjct: 2   SLPETKSDDILLDAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTG 61

Query: 62  TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTI 121
           TMHLGNA+AANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFA +QA GV+ILT+STI
Sbjct: 62  TMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTI 121

Query: 122 IPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ 181
           IP LRPP+CN      C QASG+QL VLY+ALYLTALGTGG+K+SVSGFGSDQFD+++P+
Sbjct: 122 IPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPK 181

Query: 182 ERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR 241
           ER++MT FFN FFF I++GSL AVTVLVY+QD++GR+WGYGICA AIV  L VFL+GT R
Sbjct: 182 ERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNR 241

Query: 242 YRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDD-IPVEGK-KTKQRLPHTKQ 299
           YRFKKL+GSP+TQ+A+V V AWR R L+LP+DPS  +++DD I  EG  K KQ+LPHT+Q
Sbjct: 242 YRFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQ 301

Query: 300 FRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQM 359
           FR LDKAAI +D + +  T+ V NKW L+TLTDVEEVK ++RMLPIWAT I+FWTV+AQ+
Sbjct: 302 FRSLDKAAI-RDQE-AGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQL 359

Query: 360 TTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTP 419
           TT SV+Q+ T++R IGSFEIP AS+  F+VG +LLT  VYDR+ + + +K+F  P GL P
Sbjct: 360 TTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRP 419

Query: 420 LQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAE-IPLSVFWLVPQFFLVGAG 478
           LQRIG+GL     AM  AAL E+KRLR A +HG    PT + +PL  + L+PQ+ +VG G
Sbjct: 420 LQRIGLGLFFGSMAMAVAALVELKRLRTAHAHG----PTVKTLPLGFYLLIPQYLIVGIG 475

Query: 479 EAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADN 538
           EA  Y GQLDFFLRECPKGMK MSTGL LSTL+LGFF SS+LV++V K TG   PW+AD+
Sbjct: 476 EALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADD 535

Query: 539 LNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPA 589
           LN+GRLY+FYWL+A+L ALNF+I+L F++WYVYK+KRLAE GIEL++ EP+
Sbjct: 536 LNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRLAEVGIELDD-EPS 585

Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  629 bits (1622), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 336/563 (59%), Positives = 420/563 (74%), Gaps = 19/563 (3%)

Query: 11  TLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASA 70
           T+ DA DYKGRPA++SKTGGW +AA+ILG E  ERL+T+GIAVNLVTYL  TMHL ++++
Sbjct: 8   TVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTS 67

Query: 71  ANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKC 130
           AN VT+F+GTSF+LCLLGGF+AD+FLGR+ TI IF+T+QA G   L ++T +P LRPP C
Sbjct: 68  ANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTC 127

Query: 131 NLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF 190
           +  HG++CI A+  Q+ +LY++LYL ALGTGGLKSS+SGFGSDQFDD DP+E+  M  FF
Sbjct: 128 H--HGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query: 191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGS 250
           N FFFFIS+G+L AVTVLVY+QD +GR W YGIC  ++   +V+FL GT+RYR+KK  GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query: 251 PLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFK 310
           P+ QI  V   A+RKR ++LP   S+ +  +D P EG     R+ HT QF  LDKAAI  
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQ--SIVYLYEDNP-EGI----RIEHTDQFHLLDKAAIVA 298

Query: 311 DSDMSNST--TVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQAT 368
           + D   +     + N W L+++T VEEVKM++R+LPIWATTIIFWT YAQM TFSV QA+
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query: 369 TMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLV 428
           TM R+IGSF+IP  SLT FFV +IL+T+ VYDR I+P  +K +K   G + LQRI +GLV
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKK-WKGKPGFSSLQRIAIGLV 417

Query: 429 LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLD 488
           LS   M AAAL E KRL  A+S          +P+SVF LVPQFFLVGAGEAF Y GQLD
Sbjct: 418 LSTAGMAAAALVEQKRLSVAKS-----SSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLD 472

Query: 489 FFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKP--WLADNLNQGRLYD 546
           FF+ + PKGMKTMSTGLFL+TLSLGFFVSS LVS+V +VT       WLADN+N GRL  
Sbjct: 473 FFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDY 532

Query: 547 FYWLLAILSALNFVIYLAFARWY 569
           FYWLL ILS +NFV+Y+  A W+
Sbjct: 533 FYWLLVILSGINFVVYIICALWF 555

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVE0|PTR33_ARATH Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1

 Score =  572 bits (1473), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/564 (54%), Positives = 399/564 (70%), Gaps = 26/564 (4%)

Query: 14  DAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANT 73
           +A+DY+G P ++SKTGGW  A +ILG E  ER+  +GI++NLVTYL G +H+ +A +A  
Sbjct: 16  EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query: 74  VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCN-- 131
           VTNF+GT  +L LLGGF+AD  LGRY  +AI A+V A GV +LT++T I S+RPP C+  
Sbjct: 76  VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDF 135

Query: 132 --LNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF 189
             L+H   CI+A+G QL +LY+ALY  ALG GG+KS+VSGFGSDQFD SDP+E  QM  F
Sbjct: 136 RRLHH--QCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFF 193

Query: 190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVG 249
           FN F+F IS+GSL AV  LVY+QDN+GR WGYGI A  +V   +V L GT+RYRFKK  G
Sbjct: 194 FNRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKG 253

Query: 250 SPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIF 309
           SP T I  V  +AW+KR    P+ PS+    D+  V         PHT+  + LDKAAI 
Sbjct: 254 SPFTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTTV---------PHTEMLKCLDKAAIS 304

Query: 310 K-DSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQAT 368
           K +S  S+      + W ++T+T VEEVK+V++++PIWAT I+FWT+Y+QMTTF+V QAT
Sbjct: 305 KNESSPSSKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQAT 364

Query: 369 TMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLV 428
            M+R +GSF +P  S + F + +ILL   + +R+ VP+ R++ K PQG+T LQRIGVGLV
Sbjct: 365 FMDRKLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLV 424

Query: 429 LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLD 488
            S+ AM  AA+ E  R  AA    + ND      +S FWLVPQ+FLVGAGEAF Y+GQL+
Sbjct: 425 FSMAAMAVAAVIENARREAA----VNNDK----KISAFWLVPQYFLVGAGEAFAYVGQLE 476

Query: 489 FFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFY 548
           FF+RE P+ MK+MSTGLFLST+S+GFFVSSLLVSLV +VT   K WL  NLN+ RL  FY
Sbjct: 477 FFIREAPERMKSMSTGLFLSTISMGFFVSSLLVSLVDRVT--DKSWLRSNLNKARLNYFY 534

Query: 549 WLLAILSALNFVIYLAFARWYVYK 572
           WLL +L ALNF+I++ FA  + YK
Sbjct: 535 WLLVVLGALNFLIFIVFAMKHQYK 558

Low-affinity nitrate transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  509 bits (1311), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 259/559 (46%), Positives = 370/559 (66%), Gaps = 13/559 (2%)

Query: 17  DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
           D   +PA ++KTG W +   ILG E CERL   G++ NL+ YL   M++ N SA+ +V+N
Sbjct: 15  DIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSN 74

Query: 77  FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQ 136
           + GT +   L+G FIAD +LGRY TIA F  +  AG+T+LTIS  +P L P  C+   G+
Sbjct: 75  WSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP-TCS---GE 130

Query: 137 SCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF 196
           +C  A+  Q  + +IALYL ALGTGG+K  VS FG+DQFDD+D +E+   ++FFNWF+F 
Sbjct: 131 TC-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFV 189

Query: 197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
           I++G++ A +VLV+IQ N+G  WG G+   A+   +V F +G+  YR +K  GSPLT++ 
Sbjct: 190 INVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRML 249

Query: 257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
            V V + RK  + +P D S+ +   D       ++ +L HTK   F DKAA+  +SD  N
Sbjct: 250 QVIVASCRKSKVKIPEDESLLYENQDAESSIIGSR-KLEHTKILTFFDKAAVETESD--N 306

Query: 317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIG- 375
                 + W L T+T VEE+K +IR+LPIWAT I+F +VY+QM T  V Q  T+++H+G 
Sbjct: 307 KGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGP 366

Query: 376 SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMV 435
           +F+IP ASL+ F   S+L   PVYD++IVP ARK     +G T LQRIG+GLV+SIF+MV
Sbjct: 367 NFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMV 426

Query: 436 AAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP 495
           +A + E+ RL   ++H L N+ T  IP+++FW VPQ+FLVG  E FT+IGQL+FF  + P
Sbjct: 427 SAGILEVARLNYVQTHNLYNEET--IPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAP 484

Query: 496 KGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVT--GDKKPWLADNLNQGRLYDFYWLLAI 553
             M+++ + L L+ ++ G ++S+ LV+LV KVT  G +  W+A NLN G L  F+WLLA 
Sbjct: 485 DAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAG 544

Query: 554 LSALNFVIYLAFARWYVYK 572
           LS LNF++YL  A+WY YK
Sbjct: 545 LSFLNFLVYLWIAKWYTYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  503 bits (1295), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/559 (45%), Positives = 369/559 (66%), Gaps = 12/559 (2%)

Query: 17  DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
           D    PA + KTG W +   ILG E CERL   G+  NLV YL   ++ GNA+AAN VTN
Sbjct: 14  DIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTN 73

Query: 77  FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQ 136
           + GT ++  L+G FIAD +LGRY TIA F  +  +G+T+LT+S  +P L+P  CN     
Sbjct: 74  WSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN---AD 130

Query: 137 SCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF 196
           +C   +  Q  V ++ALY+ ALGTGG+K  VS FG+DQFD++D  E+ + ++FFNWF+F 
Sbjct: 131 TC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFS 189

Query: 197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
           I++G+L A TVLV+IQ N+G  WG+G+   A+V  +  F  G+R YR ++  GSPLT+I 
Sbjct: 190 INVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIF 249

Query: 257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
            V V A+RK  + +P D S+ F   D     K ++ +L HT   +F DKAA+   SD   
Sbjct: 250 QVIVAAFRKISVKVPEDKSLLFETADDESNIKGSR-KLVHTDNLKFFDKAAVESQSDSIK 308

Query: 317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIG- 375
              V  N W L ++T VEE+K +I +LP+WAT I+F TVY+QM+T  V Q  TM++H+G 
Sbjct: 309 DGEV--NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGK 366

Query: 376 SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMV 435
           +FEIP ASL+ F   S+L   PVYD+ I+P+ARK  +  +G T LQR+G+GLV+SIFAM+
Sbjct: 367 NFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMI 426

Query: 436 AAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP 495
            A + E+ RL   ++H   +    +I +S+FW +PQ+ L+G  E FT+IGQL+FF  + P
Sbjct: 427 TAGVLEVVRLDYVKTHNAYDQK--QIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAP 484

Query: 496 KGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVT-GDKKP-WLADNLNQGRLYDFYWLLAI 553
             M+++ + L L+T++LG ++S++LV++V K+T  + KP W+ DNLN+G L  F++LLA 
Sbjct: 485 DAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLAT 544

Query: 554 LSALNFVIYLAFARWYVYK 572
           LS LNF++YL  ++ Y YK
Sbjct: 545 LSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/562 (43%), Positives = 354/562 (62%), Gaps = 13/562 (2%)

Query: 17  DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
           D+ G P  + KTG W +   ILG E CERL   GIA NL+TYLT  +H GN SAA  VT 
Sbjct: 31  DFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTT 90

Query: 77  FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQ 136
           + GT ++  L+G  +AD + GRY TIA F+ +   G++ LT+S  +P+L+P +C    G 
Sbjct: 91  WQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC---IGD 147

Query: 137 SCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF 196
            C  A+  Q  + +  LYL ALGTGG+K  VS FG+DQFDD+D +ER +  +FFNWF+F 
Sbjct: 148 FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFS 207

Query: 197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
           I+IG+L + ++LV+IQ+N G   G+GI    +   +  F  GT  YRF+K  GSP+T+I+
Sbjct: 208 INIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRIS 267

Query: 257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
            V V ++RK  + +P D ++ +   D         +++ HT   ++LDKAA+  + +  +
Sbjct: 268 QVVVASFRKSSVKVPEDATLLYETQD-KNSAIAGSRKIEHTDDCQYLDKAAVISEEESKS 326

Query: 317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGS 376
                 N W L T+T VEE+K++IRM PIWA+ IIF  VYAQM+T  V Q   MN  IGS
Sbjct: 327 GDYS--NSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGS 384

Query: 377 FEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVA 436
           F++P A+L  F   S+++ VP+YDR IVP+ARK     +G T +QR+G+GL +S+  M A
Sbjct: 385 FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAA 444

Query: 437 AALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPK 496
           AA+ EI RL  A   GL  +  A +P+SV W +PQ+F++GA E F +IGQL+FF  + P 
Sbjct: 445 AAIVEIIRLHMANDLGLV-ESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPD 503

Query: 497 GMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVT--GDKKPWLADNLNQGRLYDFYWLLAIL 554
            M+++ + L L T +LG ++SSL+++LV   T    ++ W++DNLN G L  F+WLLA L
Sbjct: 504 AMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGL 563

Query: 555 SALNFVIY-LAFARWYVYKDKR 575
           S +N  +Y  + AR   YK K+
Sbjct: 564 SLVNMAVYFFSAAR---YKQKK 582

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/573 (44%), Positives = 352/573 (61%), Gaps = 14/573 (2%)

Query: 6   QAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHL 65
           Q++ K   +     GRP  R K GG  +   I   E CE+L  +G   N+++YLT  +HL
Sbjct: 4   QSKNKISEEEKQLHGRP-NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHL 61

Query: 66  GNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSL 125
               AANT+TNF GTS +  LLG FIAD+F GR+ TI   + +   G+T+LTIS IIP+L
Sbjct: 62  PLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTL 121

Query: 126 RPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ 185
           RPP C     + C+ A   QL +LY+AL L ALG+GG++  V  FG+DQFD+SDP +  +
Sbjct: 122 RPPPCKGE--EVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTK 179

Query: 186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFK 245
             N+FNW++F +    L AVTVLV+IQDN+G   G GI   A+   ++ F+ G + YR  
Sbjct: 180 TWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHL 239

Query: 246 KLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDI--PVEGKKTKQRLPHTKQFRFL 303
              GSP T++  V V A+RKR L + SDPS+ +  D+I  P+       +L HTK   FL
Sbjct: 240 VPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPIS---LGGKLTHTKHMSFL 296

Query: 304 DKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFS 363
           DKAAI  + D      +  N W L+T+  VEE+K VIRM PI A+ I+  T YAQ  TFS
Sbjct: 297 DKAAIVTEEDNLKPGQIP-NHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFS 355

Query: 364 VSQATTMNRHI-GSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQR 422
           + QA TMNRH+  SF+IP  S++ F   ++L T+  YDR+ V +ARK     +G+T L R
Sbjct: 356 LQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHR 415

Query: 423 IGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFT 482
           +G+G V+SI A + A   E+KR   A  HGL + P   +P+S  WL+PQ+ L G  EAF 
Sbjct: 416 MGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFM 475

Query: 483 YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTG--DKKPWLAD-NL 539
            IG L+FF  + P+ M++ +T LF   +S+G +VS+LLV+LVHK +   D   WL D NL
Sbjct: 476 SIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNL 535

Query: 540 NQGRLYDFYWLLAILSALNFVIYLAFARWYVYK 572
           N+GRL  FYWL+ +L A+N V YL  A+ Y YK
Sbjct: 536 NRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  440 bits (1131), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/552 (41%), Positives = 340/552 (61%), Gaps = 22/552 (3%)

Query: 17  DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
           D  G P  + KTG W +   ILG E CERL   GIA NL+TY T  +H  N SAA+ V  
Sbjct: 42  DIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMI 101

Query: 77  FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQ 136
           + GT ++  L+G  IAD++ GRY TIA F+ +   G+ +LT+S  +P L+P  C      
Sbjct: 102 WQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAA 161

Query: 137 SCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF 196
            C  A+ +Q  V +  LYL ALGTGG+K  VS FG+DQFDD+DP+ER +  +FFNWF+F 
Sbjct: 162 LCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFS 221

Query: 197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV--FLSGTRRYRFKKLVGSPLTQ 254
           I+IGS  + T+LV++Q+N+G  WG G     +  G+ +  F  GT  YRF+K  GSP+T+
Sbjct: 222 INIGSFISSTLLVWVQENVG--WGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITR 279

Query: 255 IASVFVVAWRKRHLDLPSDPSMFFNIDDIP--VEGKKTKQRLPHTKQFRFLDKAAIFKDS 312
           +  V V A+RK  L+LP D S  +   +    + G +   ++ HT  ++FLDKAA+   S
Sbjct: 280 VCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR---KIQHTDGYKFLDKAAVI--S 334

Query: 313 DMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNR 372
           +  + +    N W L T+T VEEVK +IRM PIWA+ I++  +Y+Q++T  V Q  +MNR
Sbjct: 335 EYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR 394

Query: 373 HIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIF 432
            I SFEIP AS   F    +L+++P+YDR +VP  R+    P+GLT LQR+G+GL LS+ 
Sbjct: 395 IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVL 454

Query: 433 AMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLR 492
           ++ AAA+ E  RL+ A+           + +S+FW +PQ+ L+G  E F +IG+++FF  
Sbjct: 455 SIAAAAIVETVRLQLAQDF---------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYD 505

Query: 493 ECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVT--GDKKPWLADNLNQGRLYDFYWL 550
           E P  M+++ + L L   ++G ++SSL+++LV   T  G K  W+ D+LN+G L  F+WL
Sbjct: 506 ESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWL 565

Query: 551 LAILSALNFVIY 562
           L  L  +N  +Y
Sbjct: 566 LVSLGLVNIPVY 577

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/568 (41%), Positives = 350/568 (61%), Gaps = 21/568 (3%)

Query: 14  DAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANT 73
           ++ D++GRP+  +K GG  +A  +LG +A E +    +  NL+TY+   MH   + AAN 
Sbjct: 28  ESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANI 87

Query: 74  VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLN 133
           VTNF+GT F+  LLGG+++D FLG + TI IF  V+ +G  +L++   +P L+PPKCN  
Sbjct: 88  VTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPL 147

Query: 134 HGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF 193
             Q+C +A G + ++ ++ALYL ALG+G +K ++   G+DQF  S P++  +++++FN  
Sbjct: 148 IDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAA 207

Query: 194 FFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLT 253
           +F  S+G L A+T+LV++Q + G + G+G+ A A+  G++  +SGT  +R K+   S  T
Sbjct: 208 YFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFT 267

Query: 254 QIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAI-FKDS 312
            IA V V A  KR L  PSDP M    D            LPHT +FRFLDKA I  +D+
Sbjct: 268 PIAHVIVAAILKRKLASPSDPRMLHG-DHHVANDVVPSSTLPHTPRFRFLDKACIKIQDT 326

Query: 313 DMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMN- 371
           +   S       W L T+T VE+VK +I ++PI+A+TI+F T+ AQ+ TFSV Q ++MN 
Sbjct: 327 NTKES------PWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNT 380

Query: 372 RHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSI 431
           R   SF IP ASL       ++  VP+YD  +VP ARK+     G+ PL RIG+GL LS 
Sbjct: 381 RLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLST 440

Query: 432 FAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFL 491
           F+MV+AA+ E KR  ++   G          LS+FW+ PQF + G  E FT +G ++FF 
Sbjct: 441 FSMVSAAMLEKKRRDSSVLDGRI--------LSIFWITPQFLIFGISEMFTAVGLIEFFY 492

Query: 492 RECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTG---DKKPWLADN-LNQGRLYDF 547
           ++  KGM++    L   + S GF+ SS+LVS+V+K+T    D K WL +N LN+ RL  F
Sbjct: 493 KQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLF 552

Query: 548 YWLLAILSALNFVIYLAFARWYVYKDKR 575
           YWLLA+LS LNF+ YL ++RW +   +R
Sbjct: 553 YWLLAVLSLLNFLSYLFWSRWNIKSSRR 580

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  414 bits (1064), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 354/573 (61%), Gaps = 14/573 (2%)

Query: 17  DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
           D +G P  RS  G W + + ++  E  ER+   GI+ NL  Y+T  +H G   ++N VTN
Sbjct: 17  DLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTN 76

Query: 77  FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQ 136
           ++GTS++  +LG ++ D  LGRY+T  I   +  +G+ +LT+S  IP ++PP+C+  + +
Sbjct: 77  WVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVE 136

Query: 137 SCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF 196
           +C +AS +QL V + ALY  A+GTGG K ++S  G+DQFD  DP+E+ Q  +FFNW+ F 
Sbjct: 137 NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFS 196

Query: 197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
           I  G+L A TVLVY+QDN+G   GYG+    +   + +FL GT  YR K   GSP T++A
Sbjct: 197 IFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMA 256

Query: 257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
            V V ++RK +  +  D + F  +  +  E K      P T   RFLD+A++   ++   
Sbjct: 257 RVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHP-TPSLRFLDRASLKTGTN--- 312

Query: 317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHI-G 375
                 +KWNL T T+VEE K ++RMLP+   T +   + AQ+ T  V Q TT++R + G
Sbjct: 313 ------HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTG 366

Query: 376 SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMV 435
           SF IP ASL+ F   S+L+++ +YDR+ V I RK    P+G+T LQR+G+GL+  I  M+
Sbjct: 367 SFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMI 426

Query: 436 AAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP 495
            A++ E  RL+ A  HGL +    ++PL++F L+PQF L+G  ++F  + +L+FF  + P
Sbjct: 427 VASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQAP 486

Query: 496 KGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDK-KPWLADNLNQGRLYDFYWLLAIL 554
           + MK++ T    ++L++G F+SS L+S V ++T  + + W+ +NLN+ RL  +Y   A+L
Sbjct: 487 ESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLDYYYLFFAVL 546

Query: 555 SALNFVIYLAFARWYVYKDKRLAEEGIELEEPE 587
           + +NFV++L   ++YVY+ +    + ++++E E
Sbjct: 547 NLVNFVLFLVVVKFYVYRAE--VTDSVDVKEVE 577

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
224071551	583	predicted protein [Populus trichocarpa]	0.979	0.993	0.837	0.0
225427035	591	PREDICTED: nitrate transporter 1.1 [Viti	0.994	0.994	0.825	0.0
147789173	591	hypothetical protein VITISV_004658 [Viti	0.994	0.994	0.824	0.0
9581819	594	putative low-affinity nitrate transporte	0.994	0.989	0.782	0.0
255577809	584	oligopeptide transporter, putative [Rici	0.983	0.994	0.791	0.0
33411520	596	nitrate transporter [Prunus persica]	0.967	0.959	0.828	0.0
28273100	594	nitrate transporter [Nicotiana tabacum]	0.994	0.989	0.782	0.0
48675345	594	nitrate transporter [Prunus persica]	0.967	0.962	0.828	0.0
449466294	593	PREDICTED: nitrate transporter 1.1-like	0.993	0.989	0.795	0.0
449459766	591	PREDICTED: nitrate transporter 1.1-like	0.988	0.988	0.756	0.0

>gi|224071551|ref|XP_002303512.1| predicted protein [Populus trichocarpa] gi|222840944|gb|EEE78491.1| predicted protein [Populus trichocarpa]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/590 (83%), Positives = 533/590 (90%), Gaps = 11/590 (1%)

Query: 4   LPQAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTM 63
           LP+ QGKTLPDAWD KGRPAERSKTGGWTSAAMILGGEA ERLTTLGIAVNLVTYLTGTM
Sbjct: 3   LPETQGKTLPDAWDCKGRPAERSKTGGWTSAAMILGGEAMERLTTLGIAVNLVTYLTGTM 62

Query: 64  HLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIP 123
           HLGNA++ANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA GVTILTIST++P
Sbjct: 63  HLGNATSANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQATGVTILTISTVVP 122

Query: 124 SLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQER 183
           SLRPPKC  N    CI A+G QL VLY+ALYLTALGTGGLKSSVSGFGSDQFDD+DP+ER
Sbjct: 123 SLRPPKCVDN--TDCIPANGEQLTVLYLALYLTALGTGGLKSSVSGFGSDQFDDTDPKER 180

Query: 184 NQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYR 243
            QM NFFNWFFF IS+G+L AVTVLVYIQDNLGREWGYGICACAIV GL+VFLSGTRRYR
Sbjct: 181 KQMLNFFNWFFFLISLGALCAVTVLVYIQDNLGREWGYGICACAIVLGLIVFLSGTRRYR 240

Query: 244 FKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFL 303
           F+KLVGSPLTQIA+VFV AWRKRH++LPSD S+ +N+DD+    K+ KQ+LPHTKQFRFL
Sbjct: 241 FRKLVGSPLTQIATVFVSAWRKRHMELPSDVSLLYNVDDVEEGSKEKKQKLPHTKQFRFL 300

Query: 304 DKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFS 363
           DKAAI K  ++       +NKWNLATLTDVEEVKMVIRMLPIWATT+IFWTVYAQMTTFS
Sbjct: 301 DKAAI-KGLEVGK-----VNKWNLATLTDVEEVKMVIRMLPIWATTVIFWTVYAQMTTFS 354

Query: 364 VSQATTMNRHIG-SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQR 422
           VSQATTM+R IG SF+IP ASLT FFVGSILLTVPVYDRIIVP+AR+V K PQGLTPL+R
Sbjct: 355 VSQATTMDRRIGKSFQIPAASLTVFFVGSILLTVPVYDRIIVPVARRVLKHPQGLTPLRR 414

Query: 423 IGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFT 482
           IGVGLVLSI AM+AAAL E KRLRAAR HGL NDPTAEIPLSVFWLVPQFF VG+GEAFT
Sbjct: 415 IGVGLVLSIVAMIAAALTEKKRLRAARLHGLANDPTAEIPLSVFWLVPQFFFVGSGEAFT 474

Query: 483 YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQG 542
           YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSS LV++VHKVT + KPWLADNLNQG
Sbjct: 475 YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSSLVTIVHKVTIN-KPWLADNLNQG 533

Query: 543 RLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEE-PEPACH 591
           RL+DFYWLLAILSALNFVIYL  ARWYVYKDKRLA+EGIEL+E  EP  H
Sbjct: 534 RLHDFYWLLAILSALNFVIYLICARWYVYKDKRLADEGIELDEVDEPTFH 583

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427035|ref|XP_002266951.1| PREDICTED: nitrate transporter 1.1 [Vitis vinifera]

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/591 (82%), Positives = 530/591 (89%), Gaps = 3/591 (0%)

Query: 3   ELPQAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT 62
            LPQ QG T+ DAWDYKGRPAERS+TGGW SAAMILG EACERLTTLGIAVNLVTYLTGT
Sbjct: 2   SLPQTQGDTILDAWDYKGRPAERSRTGGWMSAAMILGVEACERLTTLGIAVNLVTYLTGT 61

Query: 63  MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII 122
           MHLGNAS+ANTVTNFLGTSFMLCLLGGF+ADTFLGRYLTIAIFATVQA GVTILTIST I
Sbjct: 62  MHLGNASSANTVTNFLGTSFMLCLLGGFVADTFLGRYLTIAIFATVQATGVTILTISTTI 121

Query: 123 PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE 182
           PSLRPPKC +  G  C  ASGMQLVVLY+ALYLTALGTGGLKSSVSGFGSDQFDDS+ +E
Sbjct: 122 PSLRPPKCAMETGPLCTPASGMQLVVLYLALYLTALGTGGLKSSVSGFGSDQFDDSNKEE 181

Query: 183 RNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRY 242
           RNQMTNFFNWFFFFISIGSLAAVT+LVYIQDNLGR+WGYGICACAI  GLVVFLSGTR+Y
Sbjct: 182 RNQMTNFFNWFFFFISIGSLAAVTILVYIQDNLGRKWGYGICACAIAIGLVVFLSGTRKY 241

Query: 243 RFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG-KKTKQRLPHTKQFR 301
           RFKKLVGSPLTQIA+VFV AW+KR+L+LP+D S  F+ID    EG KK KQRLPH+KQFR
Sbjct: 242 RFKKLVGSPLTQIATVFVAAWKKRNLELPTDSSFLFDIDYAAAEGQKKKKQRLPHSKQFR 301

Query: 302 FLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTT 361
           FLD+AAI KD  M N    V+NKW L+TLTDVEEVK+V+RMLP WATTI+FWTVYAQMTT
Sbjct: 302 FLDRAAI-KDPQMGNGINAVVNKWQLSTLTDVEEVKLVLRMLPTWATTILFWTVYAQMTT 360

Query: 362 FSVSQATTMNRHIG-SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPL 420
           FSVSQATTM+RHIG SF+IP ASLT FFVG+ILLTVPVYDRI+VPIA ++ K PQGLTPL
Sbjct: 361 FSVSQATTMDRHIGKSFQIPPASLTVFFVGAILLTVPVYDRILVPIAARILKNPQGLTPL 420

Query: 421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEA 480
           QRIGVGLVLSI AMVAAAL E+KRL  ARSHGLT+DPTA +PL VFWLVPQF LVGAGEA
Sbjct: 421 QRIGVGLVLSILAMVAAALTELKRLHVARSHGLTDDPTAVVPLGVFWLVPQFLLVGAGEA 480

Query: 481 FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLN 540
           FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFF+SSLLVS+VHK+TGD+KPWLADNLN
Sbjct: 481 FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFLSSLLVSIVHKLTGDRKPWLADNLN 540

Query: 541 QGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH 591
           QG+LY+FYWLLAILS  N   YL  A+WYVYKDKRLA+EGIELE+  P CH
Sbjct: 541 QGKLYNFYWLLAILSVFNLGFYLIGAKWYVYKDKRLADEGIELEDVGPTCH 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789173|emb|CAN71417.1| hypothetical protein VITISV_004658 [Vitis vinifera]

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/591 (82%), Positives = 529/591 (89%), Gaps = 3/591 (0%)

Query: 3   ELPQAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT 62
            LPQ QG T+ DAWDYKGRPAERS+TGGW SAAMILG EACERLTTLGIAVNLVTYLTGT
Sbjct: 2   SLPQTQGDTILDAWDYKGRPAERSRTGGWMSAAMILGVEACERLTTLGIAVNLVTYLTGT 61

Query: 63  MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII 122
           MHLGNAS+ANTVTNFLGTSFMLCLLGGF+ADTFLGRYLTIAIFATVQA GVTILTIST I
Sbjct: 62  MHLGNASSANTVTNFLGTSFMLCLLGGFVADTFLGRYLTIAIFATVQATGVTILTISTTI 121

Query: 123 PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE 182
           PSLRPPKC +  G  C  ASGMQLVVLY+ALYLTALGTGGLKSSVSGFGSDQFDDS+ +E
Sbjct: 122 PSLRPPKCAMETGPLCTPASGMQLVVLYLALYLTALGTGGLKSSVSGFGSDQFDDSNKEE 181

Query: 183 RNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRY 242
           RNQMTNFFNWFFFFISIGSLAAVT+LVYIQDNLGR+WGYGICACAI  GLVVFLSGTR+Y
Sbjct: 182 RNQMTNFFNWFFFFISIGSLAAVTILVYIQDNLGRKWGYGICACAIAIGLVVFLSGTRKY 241

Query: 243 RFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG-KKTKQRLPHTKQFR 301
           RFKKLVGSPLTQIA+VFV AW+KR+L+LP+D S  F+ID    EG KK KQRLPH+KQFR
Sbjct: 242 RFKKLVGSPLTQIATVFVAAWKKRNLELPTDSSFLFDIDYAAAEGQKKKKQRLPHSKQFR 301

Query: 302 FLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTT 361
           FLD+AAI KD  M N    V+NK  L+TLTDVEEVK+V+RMLP WATTI+FWTVYAQMTT
Sbjct: 302 FLDRAAI-KDPQMGNGINAVVNKXQLSTLTDVEEVKLVLRMLPTWATTILFWTVYAQMTT 360

Query: 362 FSVSQATTMNRHIG-SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPL 420
           FSVSQATTM+RHIG SF+IP ASLT FFVG+ILLTVPVYDRI+VPIA ++ K PQGLTPL
Sbjct: 361 FSVSQATTMDRHIGKSFQIPPASLTVFFVGAILLTVPVYDRILVPIAARILKNPQGLTPL 420

Query: 421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEA 480
           QRIGVGLVLSI AMVAAAL E+KRL  ARSHGLT+DPTA +PL VFWLVPQF LVGAGEA
Sbjct: 421 QRIGVGLVLSILAMVAAALTELKRLHVARSHGLTDDPTAVVPLGVFWLVPQFLLVGAGEA 480

Query: 481 FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLN 540
           FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFF+SSLLVS+VHK+TGD+KPWLADNLN
Sbjct: 481 FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFLSSLLVSIVHKLTGDRKPWLADNLN 540

Query: 541 QGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH 591
           QG+LY+FYWLLAILS  N   YL  A+WYVYKDKRLA+EGIELE+  P CH
Sbjct: 541 QGKLYNFYWLLAILSVFNLGFYLIGAKWYVYKDKRLADEGIELEDVGPTCH 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9581819|emb|CAC00545.1| putative low-affinity nitrate transporter [Nicotiana plumbaginifolia]

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/592 (78%), Positives = 510/592 (86%), Gaps = 4/592 (0%)

Query: 4   LPQAQ--GKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTG 61
           LP+ Q   K LPDAWDYKGRPA RS +GGW S AMILG EA ERLTTLGIAVNLVTYLTG
Sbjct: 3   LPETQQDSKALPDAWDYKGRPALRSSSGGWASGAMILGVEAVERLTTLGIAVNLVTYLTG 62

Query: 62  TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTI 121
           TMHLGNA+AAN VTNFLGTSFML LLGGF+ADTFLGRYLTI IFATVQA GVTILTISTI
Sbjct: 63  TMHLGNATAANNVTNFLGTSFMLTLLGGFVADTFLGRYLTIGIFATVQAMGVTILTISTI 122

Query: 122 IPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ 181
           IPSLRPPKC      SCI A+  QL+VLYIALY+TALGTGGLKSSVSGFG+DQFDD D +
Sbjct: 123 IPSLRPPKCEQVGSSSCIPANSKQLMVLYIALYMTALGTGGLKSSVSGFGTDQFDDGDKK 182

Query: 182 ERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR 241
           E+ QM  FF+WFFFFI++GSL AVTVLVYIQDNLGREWGYGICACAIV GLVVFLSGTR+
Sbjct: 183 EKGQMIKFFDWFFFFINVGSLGAVTVLVYIQDNLGREWGYGICACAIVIGLVVFLSGTRK 242

Query: 242 YRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG-KKTKQRLPHTKQF 300
           YRFKKLVGSPLTQIASV V AW+K HL+LPS+ S+ F ID+I  EG KK+KQ+LPH+K++
Sbjct: 243 YRFKKLVGSPLTQIASVIVAAWKKTHLELPSNSSLLFEIDNIFGEGNKKSKQKLPHSKEY 302

Query: 301 RFLDKAAIFKDSDM-SNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQM 359
           RFLDKAAI +D+D+ SN T VVINKW LATLTDVEEVK++IRMLP WATTI+FWTVYAQM
Sbjct: 303 RFLDKAAIKEDNDLESNGTKVVINKWKLATLTDVEEVKLLIRMLPTWATTIMFWTVYAQM 362

Query: 360 TTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTP 419
           TTFSVS+ATTM+RHIG+FEIP ASLT FFVGSILLTV  YDRIIVPI R+    P GLTP
Sbjct: 363 TTFSVSKATTMDRHIGTFEIPPASLTVFFVGSILLTVIFYDRIIVPICRRFMNKPHGLTP 422

Query: 420 LQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGE 479
           L RI  GLVLSI AM+AAAL E+KRL+ A  HGLTND  A IPL+VFWLVPQF LVGAGE
Sbjct: 423 LHRIFTGLVLSILAMIAAALTEVKRLKVAHLHGLTNDANATIPLTVFWLVPQFLLVGAGE 482

Query: 480 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNL 539
           AFTYIGQLDFFLRECPKGMKTMSTGLFLSTL+LGFFVSS+LV++VH VTG K PWLADNL
Sbjct: 483 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLALGFFVSSILVTIVHVVTGTKNPWLADNL 542

Query: 540 NQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH 591
           NQGRLYDFYWLLAILS  N + +L  +R YVYK+KRLAE GIELE+  P CH
Sbjct: 543 NQGRLYDFYWLLAILSVFNLMFFLYSSRKYVYKEKRLAEMGIELEDDGPVCH 594

Source: Nicotiana plumbaginifolia

Species: Nicotiana plumbaginifolia

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577809|ref|XP_002529778.1| oligopeptide transporter, putative [Ricinus communis] gi|223530722|gb|EEF32592.1| oligopeptide transporter, putative [Ricinus communis]

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/591 (79%), Positives = 524/591 (88%), Gaps = 10/591 (1%)

Query: 2   TELPQAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTG 61
           ++LPQ QGKTLPDAWDYKGRPAERSKTGGWTS+AMILG EA ERLTTLGIAVNLVTYLTG
Sbjct: 3   SDLPQTQGKTLPDAWDYKGRPAERSKTGGWTSSAMILGVEAIERLTTLGIAVNLVTYLTG 62

Query: 62  TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTI 121
           TMHL NA++ANTVTNFLGTSFML LLGGF+ADTFLGRYLTIAIFATVQA G+TILTISTI
Sbjct: 63  TMHLANATSANTVTNFLGTSFMLTLLGGFVADTFLGRYLTIAIFATVQAMGITILTISTI 122

Query: 122 IPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ 181
           IPSLRPPKC+ N   +CI ASG QL VLY+ALYLTALGTGGLKSSVSGFGSDQFDD+D +
Sbjct: 123 IPSLRPPKCHNN--TACIPASGTQLNVLYLALYLTALGTGGLKSSVSGFGSDQFDDTDEK 180

Query: 182 ERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR 241
           ER QM++FF WFFF I+IG+L AVT+LVYIQDNLGREWGYGICACAIV GL+VFLSGTRR
Sbjct: 181 ERKQMSSFFGWFFFLINIGALCAVTILVYIQDNLGREWGYGICACAIVLGLIVFLSGTRR 240

Query: 242 YRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFR 301
           YRFKKLVGSPLTQIA+V V AW KR+L+LPSDPS   +ID+     KK KQ+LPH+ QFR
Sbjct: 241 YRFKKLVGSPLTQIATVLVGAWSKRNLELPSDPSFLHDIDNFDEGSKKKKQKLPHSDQFR 300

Query: 302 FLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTT 361
           FLDKAAI KD  ++     V+ KWNL+TLTDVEEVKMV+RMLPIWATTI+FWTVYAQMTT
Sbjct: 301 FLDKAAI-KDPKVT-----VVTKWNLSTLTDVEEVKMVVRMLPIWATTIMFWTVYAQMTT 354

Query: 362 FSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQ 421
           FSVSQATT++RHIG+F+IP ASLT FFVGSILLTVP+YDRIIVP+ R VFK   GLTPLQ
Sbjct: 355 FSVSQATTLDRHIGNFQIPAASLTVFFVGSILLTVPIYDRIIVPVLRNVFKKSNGLTPLQ 414

Query: 422 RIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAF 481
           RIGVGL+ SI AM+AAAL EIKRLR A SHGLT+DPTAEIP +VFWL+PQF LVG+GEA 
Sbjct: 415 RIGVGLIFSIIAMIAAALTEIKRLRTAESHGLTHDPTAEIPTTVFWLIPQFILVGSGEAL 474

Query: 482 TYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQ 541
           TY+GQLDFFL+ECPKGMKTMSTGLFLSTLSLGFF SSLLV++VHKVTG+  PW+ADN+N+
Sbjct: 475 TYVGQLDFFLKECPKGMKTMSTGLFLSTLSLGFFFSSLLVTIVHKVTGN-SPWIADNINE 533

Query: 542 GRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEE-PEPACH 591
           G+LYDFYWLLAIL+ LN V++L  A+WYVYKDKRLAE GIELEE  EPA H
Sbjct: 534 GKLYDFYWLLAILAGLNLVLFLGCAKWYVYKDKRLAEVGIELEELDEPAFH 584

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33411520|dbj|BAC81420.1| nitrate transporter [Prunus persica]

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/578 (82%), Positives = 524/578 (90%), Gaps = 6/578 (1%)

Query: 4   LPQAQGK-TLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT 62
           LP+ Q K TLPDAWD+KGRPAERSKTGGWT+AAMILGGEACERLTTLGIAVNLVTYLTGT
Sbjct: 6   LPETQEKLTLPDAWDFKGRPAERSKTGGWTAAAMILGGEACERLTTLGIAVNLVTYLTGT 65

Query: 63  MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII 122
           MHLGNA++ANTVTNFLGTSFMLCLLGGF+ADTFLGRYLTIAIFAT QA GVTILTIST I
Sbjct: 66  MHLGNATSANTVTNFLGTSFMLCLLGGFVADTFLGRYLTIAIFATFQAMGVTILTISTTI 125

Query: 123 PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE 182
           PSLRPPKC  +    CI ASG QL+VLYIALYLTALGTGGLKSSVSGFGSDQFD+SD QE
Sbjct: 126 PSLRPPKCTSDTSTPCIPASGKQLMVLYIALYLTALGTGGLKSSVSGFGSDQFDESDKQE 185

Query: 183 RNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRY 242
           R QMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGR+WGYGIC CAIV GL+VFLSGTRRY
Sbjct: 186 RRQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGRQWGYGICVCAIVLGLIVFLSGTRRY 245

Query: 243 RFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG--KKTKQRLPHTKQF 300
           RFKKLVGSPLTQI+ V V AWRKR+++LPSD S  +N+DDI  +G  KK KQ+LPH+KQF
Sbjct: 246 RFKKLVGSPLTQISGVCVAAWRKRNMELPSDMSFLYNVDDID-DGLKKKKKQKLPHSKQF 304

Query: 301 RFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMT 360
           RFLDKAAI K+   ++ T ++INKW+L+TLTDVEEVK++IRMLPIWATTI+FWTVYAQMT
Sbjct: 305 RFLDKAAI-KEPKTTSGTAMIINKWSLSTLTDVEEVKLIIRMLPIWATTIMFWTVYAQMT 363

Query: 361 TFSVSQATTMNRHIG-SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTP 419
           TFSVSQAT+M+RHIG SF+IP ASLT FFVGSILLTVPVYDR+IVP+ARK  + PQGLTP
Sbjct: 364 TFSVSQATSMDRHIGKSFQIPPASLTAFFVGSILLTVPVYDRLIVPMARKALENPQGLTP 423

Query: 420 LQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGE 479
           LQR+GVGLV SIFAMVAAAL E+KRL  ARSHGLT++PTAEIPLSVFWLVPQFF VG+GE
Sbjct: 424 LQRMGVGLVFSIFAMVAAALTEVKRLNIARSHGLTDNPTAEIPLSVFWLVPQFFFVGSGE 483

Query: 480 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNL 539
           AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFF SSLLV++VHK TG  KPWLADNL
Sbjct: 484 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFFSSLLVTIVHKTTGHNKPWLADNL 543

Query: 540 NQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLA 577
           NQG+LYDFYWLLA+LSALN VIYL  A WYVYKDKRLA
Sbjct: 544 NQGKLYDFYWLLALLSALNLVIYLFCANWYVYKDKRLA 581

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28273100|dbj|BAC56916.1| nitrate transporter [Nicotiana tabacum]

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/592 (78%), Positives = 507/592 (85%), Gaps = 4/592 (0%)

Query: 4   LPQAQ--GKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTG 61
           LP+ Q   K LPDAWDYKGRPA RS +GGW S AMILG EA ERLTTLGIAVNLVTYLTG
Sbjct: 3   LPETQQDSKALPDAWDYKGRPALRSSSGGWASGAMILGVEAVERLTTLGIAVNLVTYLTG 62

Query: 62  TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTI 121
           TMHLGNAS+AN VTNFLGTSFML LLGGF+ADTFLGRYLTI IFATVQA GVTILTISTI
Sbjct: 63  TMHLGNASSANNVTNFLGTSFMLTLLGGFVADTFLGRYLTIGIFATVQAMGVTILTISTI 122

Query: 122 IPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ 181
           IPSLRPPKC      SCI A+  QL+VLYIALY+TALGTGGLKSSVSGFG+DQFDDSD +
Sbjct: 123 IPSLRPPKCEQVGSSSCIPANSKQLMVLYIALYMTALGTGGLKSSVSGFGTDQFDDSDKK 182

Query: 182 ERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR 241
           E+ QM  FF+WFFFFI++GSL AVTVLVYIQDNLGREWGYGICACAIV  LVVFL GTR+
Sbjct: 183 EKGQMIKFFDWFFFFINVGSLGAVTVLVYIQDNLGREWGYGICACAIVIALVVFLFGTRK 242

Query: 242 YRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG-KKTKQRLPHTKQF 300
           YRFKKL GSPLTQIASV V AW+KRHL+LPSD S+ F IDDI  EG KK+KQ+LPH+K++
Sbjct: 243 YRFKKLGGSPLTQIASVIVAAWKKRHLELPSDSSLLFEIDDIFGEGNKKSKQKLPHSKEY 302

Query: 301 RFLDKAAIFKDSDM-SNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQM 359
           RFLDKAAI +D D+ SN T VVINKW LATLTDVEEVK++IRMLP WATTI+FWTVYAQM
Sbjct: 303 RFLDKAAIKEDDDLESNGTNVVINKWKLATLTDVEEVKILIRMLPTWATTIMFWTVYAQM 362

Query: 360 TTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTP 419
           TTFSVSQATTM+RHIG+FEIP A+LT FFVGSILLTV  YDRIIVPI R+    P GLTP
Sbjct: 363 TTFSVSQATTMDRHIGTFEIPPATLTVFFVGSILLTVIFYDRIIVPICRRFMNKPHGLTP 422

Query: 420 LQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGE 479
           LQRI  GLVLSI AM+AAAL E+KRL+ A  HGLTND  A IPL+VFWLVPQF LVGAGE
Sbjct: 423 LQRIFTGLVLSILAMIAAALTEVKRLKVAHLHGLTNDANATIPLTVFWLVPQFLLVGAGE 482

Query: 480 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNL 539
           AFTYIGQLDFFLRECPKGMKTMSTGLFLSTL+LGFF SS+LV++VH VTG   PWLADNL
Sbjct: 483 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLALGFFFSSILVTIVHVVTGTTNPWLADNL 542

Query: 540 NQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH 591
           NQGRLYDFYWLLAILS  N + +L  +R YVYK+KRLAE GIELE+  P CH
Sbjct: 543 NQGRLYDFYWLLAILSVFNLMFFLYSSRKYVYKEKRLAEMGIELEDDGPVCH 594

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48675345|dbj|BAD22820.1| nitrate transporter [Prunus persica]

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/578 (82%), Positives = 524/578 (90%), Gaps = 6/578 (1%)

Query: 4   LPQAQGK-TLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT 62
           LP+ Q K TLPDAWD+KGRPAERSKTGGWT+AAMILGGEACERLTTLGIAVNLVTYLTGT
Sbjct: 6   LPETQEKLTLPDAWDFKGRPAERSKTGGWTAAAMILGGEACERLTTLGIAVNLVTYLTGT 65

Query: 63  MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII 122
           MHLGNA++ANTVTNFLGTSFMLCLLGGF+ADTFLGRYLTIAIFAT QA GVTILTIST I
Sbjct: 66  MHLGNATSANTVTNFLGTSFMLCLLGGFVADTFLGRYLTIAIFATFQAMGVTILTISTTI 125

Query: 123 PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE 182
           PSLRPPKC  +    CI ASG QL+VLYIALYLTALGTGGLKSSVSGFGSDQFD+SD QE
Sbjct: 126 PSLRPPKCTSDTSTPCIPASGKQLMVLYIALYLTALGTGGLKSSVSGFGSDQFDESDKQE 185

Query: 183 RNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRY 242
           R QMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGR+WGYGIC CAIV GL+VFLSGTRRY
Sbjct: 186 RRQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGRQWGYGICVCAIVLGLIVFLSGTRRY 245

Query: 243 RFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG--KKTKQRLPHTKQF 300
           RFKKLVGSPLTQI+ V V AWRKR+++LPSD S  +N+DDI  +G  KK KQ+LPH+KQF
Sbjct: 246 RFKKLVGSPLTQISGVCVAAWRKRNMELPSDMSFLYNVDDID-DGLKKKKKQKLPHSKQF 304

Query: 301 RFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMT 360
           RFLDKAAI K+   ++ T ++INKW+L+TLTDVEEVK++IRMLPIWATTI+FWTVYAQMT
Sbjct: 305 RFLDKAAI-KEPKTTSGTAMIINKWSLSTLTDVEEVKLIIRMLPIWATTIMFWTVYAQMT 363

Query: 361 TFSVSQATTMNRHIG-SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTP 419
           TFSVSQAT+M+RHIG SF+IP ASLT FFVGSILLTVPVYDR+IVP+ARK  + PQGLTP
Sbjct: 364 TFSVSQATSMDRHIGKSFQIPPASLTAFFVGSILLTVPVYDRLIVPMARKALENPQGLTP 423

Query: 420 LQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGE 479
           LQR+GVGLV SIFAMVAAAL E+KRL  ARSHGLT++PTAEIPLSVFWLVPQFF VG+GE
Sbjct: 424 LQRMGVGLVFSIFAMVAAALTEVKRLNIARSHGLTDNPTAEIPLSVFWLVPQFFFVGSGE 483

Query: 480 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNL 539
           AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFF SSLLV++VHK TG  KPWLADNL
Sbjct: 484 AFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFFSSLLVTIVHKTTGHNKPWLADNL 543

Query: 540 NQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLA 577
           NQG+LYDFYWLLA+LSALN VIYL  A WYVYKDKRLA
Sbjct: 544 NQGKLYDFYWLLALLSALNLVIYLFCANWYVYKDKRLA 581

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466294|ref|XP_004150861.1| PREDICTED: nitrate transporter 1.1-like [Cucumis sativus] gi|449510377|ref|XP_004163647.1| PREDICTED: nitrate transporter 1.1-like [Cucumis sativus] gi|312386489|gb|ADQ74763.1| nitrate transporter 1.1 [Cucumis sativus]

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/596 (79%), Positives = 520/596 (87%), Gaps = 9/596 (1%)

Query: 1   MTELPQAQGKT-LPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYL 59
           M     +Q K  LPDAWDYKGRPA+RSKTG WT+AAMILGGEA ERLTTLGIAVNLVTY+
Sbjct: 1   MNSSTHSQTKAILPDAWDYKGRPADRSKTGRWTAAAMILGGEAVERLTTLGIAVNLVTYM 60

Query: 60  TGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTIS 119
           TGTMHLGNA +AN VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFA +QA GVTILTIS
Sbjct: 61  TGTMHLGNAVSANIVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVTILTIS 120

Query: 120 TIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSD 179
           TIIPSLRPP+C +     C  A+  QL +LYIALY TALGTGGLKSSVSGFGSDQFD+SD
Sbjct: 121 TIIPSLRPPRCTVESSSHCAPATDFQLTILYIALYTTALGTGGLKSSVSGFGSDQFDESD 180

Query: 180 PQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGT 239
            +ER QMT FFNWFFFFISIGSLAAVTVLVYIQDNLGR+WGYGICACAIV GLVVF+SGT
Sbjct: 181 KEERAQMTAFFNWFFFFISIGSLAAVTVLVYIQDNLGRQWGYGICACAIVAGLVVFVSGT 240

Query: 240 RRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVE---GKKTKQRLPH 296
           ++YRFKKLVGSPLTQIA+V V AWRKRH+DLP+D S   +IDD   E   GK  KQ+LP 
Sbjct: 241 KKYRFKKLVGSPLTQIATVIVAAWRKRHMDLPTDSSFLLDIDDFEDERKNGKMKKQKLPR 300

Query: 297 TKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVY 356
           +KQFRFLDKAAI +    ++    ++NKWN++TLTDVEEVKMVIRMLPIWAT I+FWTVY
Sbjct: 301 SKQFRFLDKAAIREPEKGAD--IALMNKWNISTLTDVEEVKMVIRMLPIWATNIMFWTVY 358

Query: 357 AQMTTFSVSQATTMNRHIG-SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQ 415
           AQMTTFSVSQATTM+RHIG SFEIP ASLT FFVGSILLTVP+YDR+IVPIARK+ K PQ
Sbjct: 359 AQMTTFSVSQATTMDRHIGKSFEIPAASLTVFFVGSILLTVPIYDRLIVPIARKILKNPQ 418

Query: 416 GLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLV 475
           GLTPLQRIGVGLVLSIFAMVAAAL E+KRLR A SH + N+ T E+PLSVFWL+PQFFLV
Sbjct: 419 GLTPLQRIGVGLVLSIFAMVAAALAELKRLRVATSHHMVNE-TTELPLSVFWLIPQFFLV 477

Query: 476 GAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWL 535
           G+GEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFF SS LV++VHK+TG+ KPWL
Sbjct: 478 GSGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFFSSFLVTIVHKITGN-KPWL 536

Query: 536 ADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH 591
           ADNLNQG+LYDFYWLLAILSALNF IYL  A+WYVYKDKRLAEEGIELEE E  CH
Sbjct: 537 ADNLNQGKLYDFYWLLAILSALNFGIYLVCAKWYVYKDKRLAEEGIELEESEMVCH 592

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459766|ref|XP_004147617.1| PREDICTED: nitrate transporter 1.1-like [Cucumis sativus] gi|449528355|ref|XP_004171170.1| PREDICTED: nitrate transporter 1.1-like [Cucumis sativus]

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/591 (75%), Positives = 503/591 (85%), Gaps = 7/591 (1%)

Query: 4   LPQA-QGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT 62
           LP+  Q KTLPDAWDY G+PA ++KTGGW +AAMILG EA ERLTTLGIAVNLVTYLT T
Sbjct: 5   LPETIQEKTLPDAWDYTGKPAIKAKTGGWVAAAMILGPEAVERLTTLGIAVNLVTYLTET 64

Query: 63  MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII 122
           MHLGNA+AAN VTNFLGTSFMLCL GGF+ADTFLGRYLTI+IFATVQAAGVTILTISTII
Sbjct: 65  MHLGNATAANNVTNFLGTSFMLCLFGGFVADTFLGRYLTISIFATVQAAGVTILTISTII 124

Query: 123 PSLRPPKCNLNHGQS-CIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ 181
           PSLRPPKC+     + CI A   QL VL+ ALYLTALGTGGLKSSVSGFGSDQFDDSD +
Sbjct: 125 PSLRPPKCSPGVSTTPCIMADSKQLAVLHTALYLTALGTGGLKSSVSGFGSDQFDDSDKE 184

Query: 182 ERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR 241
           ER +M+ FFNWFFF ISIGSL AVT+LVYIQDN GR+WGYGICACAIV GLV FL GTR+
Sbjct: 185 ERAKMSKFFNWFFFIISIGSLGAVTILVYIQDNWGRQWGYGICACAIVLGLVAFLLGTRK 244

Query: 242 YRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFR 301
           YRFKKLVGSPLTQI +VF  AWRKR LDLPSDP   + I+D      K KQ+LP TKQFR
Sbjct: 245 YRFKKLVGSPLTQIVAVFYAAWRKRKLDLPSDPFSLYQIEDAVDGSGKKKQKLPRTKQFR 304

Query: 302 FLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTT 361
           FLDKAAI KD ++  +   V+NKW ++TLTD+EEVK+V+RMLPIWATTIIFWTVYAQMTT
Sbjct: 305 FLDKAAI-KDEEVVGN---VVNKWKISTLTDIEEVKLVLRMLPIWATTIIFWTVYAQMTT 360

Query: 362 FSVSQATTMNRHIG-SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPL 420
           FSVSQATTMNRH+G SFEIP ASLT FFV SILLTVP+YDR I+PIA ++ K PQGL+PL
Sbjct: 361 FSVSQATTMNRHMGKSFEIPAASLTVFFVASILLTVPIYDRFIIPIASRILKNPQGLSPL 420

Query: 421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEA 480
           QR+GVGLVLSI AMVAAAL EIKRL+    +GLT  PTAE+PLSVFWL PQF LVG+GEA
Sbjct: 421 QRVGVGLVLSIIAMVAAALTEIKRLKVVEENGLTYKPTAEVPLSVFWLAPQFLLVGSGEA 480

Query: 481 FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLN 540
           FTY+GQLDFFLRECPKGMKTMSTGLFLSTL+LGFF SSLLV++V KVT   +PW+ DNLN
Sbjct: 481 FTYMGQLDFFLRECPKGMKTMSTGLFLSTLALGFFFSSLLVTIVGKVTEHGRPWIPDNLN 540

Query: 541 QGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGIELEEPEPACH 591
           +G+LYDFYWLLAILS LN +++L  A+WYVYK+KRLA+EGIELE+  P  H
Sbjct: 541 EGKLYDFYWLLAILSVLNLMVFLVCAKWYVYKEKRLADEGIELEDCGPTVH 591

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.957	0.959	0.579	1.2e-175
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.928	0.951	0.502	1.5e-140
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.910	0.911	0.452	5.7e-123
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.923	0.957	0.389	2.3e-103
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.925	0.959	0.384	9.8e-103
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.922	0.931	0.364	3e-94
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.942	0.934	0.377	2.4e-92
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.922	0.922	0.367	6.3e-92
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.920	0.928	0.333	1.2e-88
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.922	0.936	0.334	1.1e-87

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
 Identities = 334/576 (57%), Positives = 407/576 (70%)

Query:     4 LPQAQGKT-LPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT 62
             LP+ +    L DAWD++GRPA+RSKTGGW SAAMIL  EA ERLTTLGI VNLVTYLTGT
Sbjct:     3 LPETKSDDILLDAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGT 62

Query:    63 MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXX 122
             MHLGNA+AANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFA +QA GV         
Sbjct:    63 MHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTII 122

Query:   123 XXXRPPKCNLNHGQSCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQE 182
                RPP+CN      C QASG+QL VLY+            K               P+E
Sbjct:   123 PGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKE 182

Query:   183 RNQMTXXXXXXXXXISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRY 242
             R++MT         I++GSL AVTVLVY+QD++GR+WGYGICA AIV  L VFL+GT RY
Sbjct:   183 RSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRY 242

Query:   243 RFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDI-PVEGK-KTKQRLPHTKQF 300
             RFKKL+GSP+TQ+A+V V AWR R L+LP+DPS  +++DDI   EG  K KQ+LPHT+QF
Sbjct:   243 RFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQF 302

Query:   301 RFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMT 360
             R LDKAAI +D + +  T+ V NKW L+TLTDVEEVK ++RMLPIWAT I+FWTV+AQ+T
Sbjct:   303 RSLDKAAI-RDQE-AGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLT 360

Query:   361 TFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPL 420
             T SV+Q+ T++R IGSFEIP AS+  F+VG +LLT  VYDR+ + + +K+F  P GL PL
Sbjct:   361 TLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPL 420

Query:   421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAE-IPLSVFWLVPQFFLVGAGE 479
             QRIG+GL     AM  AAL E+KRLR A +HG    PT + +PL  + L+PQ+ +VG GE
Sbjct:   421 QRIGLGLFFGSMAMAVAALVELKRLRTAHAHG----PTVKTLPLGFYLLIPQYLIVGIGE 476

Query:   480 AFTYIGQLDFFLRECPKGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTGDKKPWLADNL 539
             A  Y GQLDFFLRECPKGMK M                        K TG   PW+AD+L
Sbjct:   477 ALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDL 536

Query:   540 NQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKR 575
             N+GRLY+FYWL+A+L ALNF+I+L F++WYVYK+KR
Sbjct:   537 NKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKR 572

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1375 (489.1 bits), Expect = 1.5e-140, P = 1.5e-140
 Identities = 286/569 (50%), Positives = 367/569 (64%)

Query:     6 QAQGK-TLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMH 64
             +++G  T+ DA DYKGRPA++SKTGGW +AA+ILG E  ERL+T+GIAVNLVTYL  TMH
Sbjct:     2 ESKGSWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMH 61

Query:    65 LGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXX 124
             L ++++AN VT+F+GTSF+LCLLGGF+AD+FLGR+ TI IF+T+QA G            
Sbjct:    62 LPSSTSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPE 121

Query:   125 XRPPKCNLNHGQSCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERN 184
              RPP C+  HG++CI A+  Q+ +LY+            K               P+E+ 
Sbjct:   122 LRPPTCH--HGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKA 179

Query:   185 QMTXXXXXXXXXISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRF 244
              M          IS+G+L AVTVLVY+QD +GR W YGIC  ++   +V+FL GT+RYR+
Sbjct:   180 HMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRY 239

Query:   245 KKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLD 304
             KK  GSP+ QI  V   A+RKR ++LP   S+ +  +D P EG     R+ HT QF  LD
Sbjct:   240 KKSQGSPVVQIFQVIAAAFRKRKMELPQ--SIVYLYEDNP-EGI----RIEHTDQFHLLD 292

Query:   305 KAAIFKDSDMSNSTT-VVI-NKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTF 362
             KAAI  + D   +   V I N W L+++T VEEVKM++R+LPIWATTIIFWT YAQM TF
Sbjct:   293 KAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITF 352

Query:   363 SVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQR 422
             SV QA+TM R+IGSF+IP  SLT FFV +IL+T+ VYDR I+P  +K +K   G + LQR
Sbjct:   353 SVEQASTMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKK-WKGKPGFSSLQR 411

Query:   423 IGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFT 482
             I +GLVLS   M AAAL E KRL  A+S   ++  T  +P+SVF LVPQFFLVGAGEAF 
Sbjct:   412 IAIGLVLSTAGMAAAALVEQKRLSVAKS---SSQKT--LPISVFLLVPQFFLVGAGEAFI 466

Query:   483 YIGQLDFFLRECPKGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTGDKKP--WLADNLN 540
             Y GQLDFF+ + PKGMKTM                        +VT       WLADN+N
Sbjct:   467 YTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNIN 526

Query:   541 QGRLYDFYWLLAILSALNFVIYLAFARWY 569
              GRL  FYWLL ILS +NFV+Y+  A W+
Sbjct:   527 HGRLDYFYWLLVILSGINFVVYIICALWF 555

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
 Identities = 255/564 (45%), Positives = 339/564 (60%)

Query:    14 DAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANT 73
             +A+DY+G P ++SKTGGW  A +ILG E  ER+  +GI++NLVTYL G +H+ +A +A  
Sbjct:    16 EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query:    74 VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXXRPPKCN-- 131
             VTNF+GT  +L LLGGF+AD  LGRY  +AI A+V A GV            RPP C+  
Sbjct:    76 VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDF 135

Query:   132 --LNHGQSCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERNQMTXX 189
               L+H   CI+A+G QL +LY+            K               P+E  QM   
Sbjct:   136 RRLHH--QCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFF 193

Query:   190 XXXXXXXISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVG 249
                    IS+GSL AV  LVY+QDN+GR WGYGI A  +V   +V L GT+RYRFKK  G
Sbjct:   194 FNRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKG 253

Query:   250 SPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIF 309
             SP T I  V  +AW+KR    P+ PS+    D+  V         PHT+  + LDKAAI 
Sbjct:   254 SPFTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTTV---------PHTEMLKCLDKAAIS 304

Query:   310 K-DSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQAT 368
             K +S  S+      + W ++T+T VEEVK+V++++PIWAT I+FWT+Y+QMTTF+V QAT
Sbjct:   305 KNESSPSSKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQAT 364

Query:   369 TMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLV 428
              M+R +GSF +P  S + F + +ILL   + +R+ VP+ R++ K PQG+T LQRIGVGLV
Sbjct:   365 FMDRKLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLV 424

Query:   429 LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLD 488
              S+ AM  AA+ E  R  AA    + ND      +S FWLVPQ+FLVGAGEAF Y+GQL+
Sbjct:   425 FSMAAMAVAAVIENARREAA----VNNDKK----ISAFWLVPQYFLVGAGEAFAYVGQLE 476

Query:   489 FFLRECPKGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTGDKKPWLADNLNQGRLYDFY 548
             FF+RE P+ MK+M                        +VT DK  WL  NLN+ RL  FY
Sbjct:   477 FFIREAPERMKSMSTGLFLSTISMGFFVSSLLVSLVDRVT-DKS-WLRSNLNKARLNYFY 534

Query:   549 WLLAILSALNFVIYLAFARWYVYK 572
             WLL +L ALNF+I++ FA  + YK
Sbjct:   535 WLLVVLGALNFLIFIVFAMKHQYK 558

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 218/559 (38%), Positives = 313/559 (55%)

Query:    17 DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
             D   +PA ++KTG W +   ILG E CERL   G++ NL+ YL   M++ N SA+ +V+N
Sbjct:    15 DIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSN 74

Query:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXXRPPKCNLNHGQ 136
             + GT +   L+G FIAD +LGRY TIA F  +  AG+             P  C+   G+
Sbjct:    75 WSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CS---GE 130

Query:   137 SCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERNQMTXXXXXXXXX 196
             +C   +G Q  + +I            K                +E+   +         
Sbjct:   131 TCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFV 189

Query:   197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
             I++G++ A +VLV+IQ N+G  WG G+   A+   +V F +G+  YR +K  GSPLT++ 
Sbjct:   190 INVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRML 249

Query:   257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
              V V + RK  + +P D S+ +   D         ++L HTK   F DKAA+  +SD  N
Sbjct:   250 QVIVASCRKSKVKIPEDESLLYENQDAE-SSIIGSRKLEHTKILTFFDKAAVETESD--N 306

Query:   317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIG- 375
                   + W L T+T VEE+K +IR+LPIWAT I+F +VY+QM T  V Q  T+++H+G 
Sbjct:   307 KGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGP 366

Query:   376 SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMV 435
             +F+IP ASL+ F   S+L   PVYD++IVP ARK     +G T LQRIG+GLV+SIF+MV
Sbjct:   367 NFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMV 426

Query:   436 AAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP 495
             +A + E+ RL   ++H L N+ T  IP+++FW VPQ+FLVG  E FT+IGQL+FF  + P
Sbjct:   427 SAGILEVARLNYVQTHNLYNEET--IPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAP 484

Query:   496 KGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVT--GDKKPWLADNLNQGRLYDFYWLLAI 553
               M+++                        KVT  G +  W+A NLN G L  F+WLLA 
Sbjct:   485 DAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAG 544

Query:   554 LSALNFVIYLAFARWYVYK 572
             LS LNF++YL  A+WY YK
Sbjct:   545 LSFLNFLVYLWIAKWYTYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 215/559 (38%), Positives = 309/559 (55%)

Query:    17 DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
             D    PA + KTG W +   ILG E CERL   G+  NLV YL   ++ GNA+AAN VTN
Sbjct:    14 DIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTN 73

Query:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXXRPPKCNLNHGQ 136
             + GT ++  L+G FIAD +LGRY TIA F  +  +G+            +P  CN +   
Sbjct:    74 WSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD--- 130

Query:   137 SCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERNQMTXXXXXXXXX 196
             +C   +  Q  V ++            K                 E+ + +         
Sbjct:   131 TC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFS 189

Query:   197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
             I++G+L A TVLV+IQ N+G  WG+G+   A+V  +  F  G+R YR ++  GSPLT+I 
Sbjct:   190 INVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIF 249

Query:   257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
              V V A+RK  + +P D S+ F   D      K  ++L HT   +F DKAA+   SD   
Sbjct:   250 QVIVAAFRKISVKVPEDKSLLFETAD-DESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK 308

Query:   317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIG- 375
                V  N W L ++T VEE+K +I +LP+WAT I+F TVY+QM+T  V Q  TM++H+G 
Sbjct:   309 DGEV--NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGK 366

Query:   376 SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMV 435
             +FEIP ASL+ F   S+L   PVYD+ I+P+ARK  +  +G T LQR+G+GLV+SIFAM+
Sbjct:   367 NFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMI 426

Query:   436 AAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP 495
              A + E+ RL   ++H   +    +I +S+FW +PQ+ L+G  E FT+IGQL+FF  + P
Sbjct:   427 TAGVLEVVRLDYVKTHNAYDQK--QIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAP 484

Query:   496 KGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTGDK-KP-WLADNLNQGRLYDFYWLLAI 553
               M+++                        K+T    KP W+ DNLN+G L  F++LLA 
Sbjct:   485 DAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLAT 544

Query:   554 LSALNFVIYLAFARWYVYK 572
             LS LNF++YL  ++ Y YK
Sbjct:   545 LSFLNFLVYLWISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 205/562 (36%), Positives = 297/562 (52%)

Query:    17 DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
             D+ G P  + KTG W +   ILG E CERL   GIA NL+TYLT  +H GN SAA  VT 
Sbjct:    31 DFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTT 90

Query:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXXRPPKCNLNHGQ 136
             + GT ++  L+G  +AD + GRY TIA F+ +   G+            +P +C    G 
Sbjct:    91 WQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECI---GD 147

Query:   137 SCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERNQMTXXXXXXXXX 196
              C  A+  Q  + +             K                +ER +           
Sbjct:   148 FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFS 207

Query:   197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV--FLSGTRRYRFKKLVGSPLTQ 254
             I+IG+L + ++LV+IQ+N G  WG G     +  GL +  F  GT  YRF+K  GSP+T+
Sbjct:   208 INIGALVSSSLLVWIQENRG--WGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITR 265

Query:   255 IASVFVVAWRKRHLDLPSDPSMFFNIDD--IPVEGKKTKQRLPHTKQFRFLDKAAIFKDS 312
             I+ V V ++RK  + +P D ++ +   D    + G +   ++ HT   ++LDKAA+  + 
Sbjct:   266 ISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSR---KIEHTDDCQYLDKAAVISEE 322

Query:   313 DMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNR 372
             +  +      N W L T+T VEE+K++IRM PIWA+ IIF  VYAQM+T  V Q   MN 
Sbjct:   323 ESKSGD--YSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query:   373 HIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIF 432
              IGSF++P A+L  F   S+++ VP+YDR IVP+ARK     +G T +QR+G+GL +S+ 
Sbjct:   381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query:   433 AMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLR 492
              M AAA+ EI RL  A   GL  +  A +P+SV W +PQ+F++GA E F +IGQL+FF  
Sbjct:   441 CMAAAAIVEIIRLHMANDLGLV-ESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYD 499

Query:   493 ECPKGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVT--GDKKPWLADNLNQGRLYDFYWL 550
             + P  M+++                          T    ++ W++DNLN G L  F+WL
Sbjct:   500 QSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWL 559

Query:   551 LAILSALNFVIYLAFARWYVYK 572
             LA LS +N  +Y   A  Y  K
Sbjct:   560 LAGLSLVNMAVYFFSAARYKQK 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 217/575 (37%), Positives = 297/575 (51%)

Query:     6 QAQGKTLPDAWDYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHL 65
             Q++ K   +     GRP  R K GG  +   I   E CE+L  +G   N+++YLT  +HL
Sbjct:     4 QSKNKISEEEKQLHGRP-NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHL 61

Query:    66 GNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXX 125
                 AANT+TNF GTS +  LLG FIAD+F GR+ TI   + +   G+            
Sbjct:    62 PLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTL 121

Query:   126 RPPKCNLNHGQS-CIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERN 184
             RPP C    G+  C+ A   QL +LY+            +               P +  
Sbjct:   122 RPPPCK---GEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTT 178

Query:   185 QMTXXXXXXXXXISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRF 244
             +           +    L AVTVLV+IQDN+G   G GI   A+   ++ F+ G + YR 
Sbjct:   179 KTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRH 238

Query:   245 KKLVGSPLTQIASVFVVAWRKRHLDLPSDPSM-FFNID-DIPVE-GKKTKQRLPHTKQFR 301
                 GSP T++  V V A+RKR L + SDPS+ +FN + D P+  G K    L HTK   
Sbjct:   239 LVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGK----LTHTKHMS 294

Query:   302 FLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTT 361
             FLDKAAI  + D      +  N W L+T+  VEE+K VIRM PI A+ I+  T YAQ  T
Sbjct:   295 FLDKAAIVTEEDNLKPGQIP-NHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGT 353

Query:   362 FSVSQATTMNRHI-GSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPL 420
             FS+ QA TMNRH+  SF+IP  S++ F   ++L T+  YDR+ V +ARK     +G+T L
Sbjct:   354 FSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFL 413

Query:   421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEA 480
              R+G+G V+SI A + A   E+KR   A  HGL + P   +P+S  WL+PQ+ L G  EA
Sbjct:   414 HRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEA 473

Query:   481 FTYIGQLDFFLRECPKGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTG--DKKPWLADN 538
             F  IG L+FF  + P+ M++                        HK +   D   WL DN
Sbjct:   474 FMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDN 533

Query:   539 -LNQGRLYDFYWLLAILSALNFVIYLAFARWYVYK 572
              LN+GRL  FYWL+ +L A+N V YL  A+ Y YK
Sbjct:   534 NLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 207/564 (36%), Positives = 302/564 (53%)

Query:    17 DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
             D++GRP+  +K GG  +A  +LG +A E +    +  NL+TY+   MH   + AAN VTN
Sbjct:    31 DWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTN 90

Query:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXXRPPKCNLNHGQ 136
             F+GT F+  LLGG+++D FLG + TI IF  V+ +G             +PPKCN    Q
Sbjct:    91 FVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQ 150

Query:   137 SCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERNQMTXXXXXXXXX 196
             +C +A G + ++ ++            K               P++  +++         
Sbjct:   151 TCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFA 210

Query:   197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
              S+G L A+T+LV++Q + G + G+G+ A A+  G++  +SGT  +R K+   S  T IA
Sbjct:   211 FSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIA 270

Query:   257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
              V V A  KR L  PSDP M    D            LPHT +FRFLDKA I K  D   
Sbjct:   271 HVIVAAILKRKLASPSDPRMLHG-DHHVANDVVPSSTLPHTPRFRFLDKACI-KIQD--- 325

Query:   317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIG- 375
              T    + W L T+T VE+VK +I ++PI+A+TI+F T+ AQ+ TFSV Q ++MN  +  
Sbjct:   326 -TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSN 384

Query:   376 SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMV 435
             SF IP ASL       ++  VP+YD  +VP ARK+     G+ PL RIG+GL LS F+MV
Sbjct:   385 SFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMV 444

Query:   436 AAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP 495
             +AA+ E KR  ++   G          LS+FW+ PQF + G  E FT +G ++FF ++  
Sbjct:   445 SAAMLEKKRRDSSVLDGRI--------LSIFWITPQFLIFGISEMFTAVGLIEFFYKQSA 496

Query:   496 KGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTG---DKKPWLADN-LNQGRLYDFYWLL 551
             KGM++                        +K+T    D K WL +N LN+ RL  FYWLL
Sbjct:   497 KGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLFYWLL 556

Query:   552 AILSALNFVIYLAFARWYVYKDKR 575
             A+LS LNF+ YL ++RW +   +R
Sbjct:   557 AVLSLLNFLSYLFWSRWNIKSSRR 580

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 187/560 (33%), Positives = 304/560 (54%)

Query:    17 DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
             D +G    RS+TG W + + ++  E  ER+   GI+ NLV Y+T  +H G   ++N VTN
Sbjct:    17 DLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTN 76

Query:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXXRPPKCNLNHGQ 136
             ++GTS++  +LG ++AD   GRY+T  I + +   G+            +PPKC+  + +
Sbjct:    77 WVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVE 136

Query:   137 SCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERNQMTXXXXXXXXX 196
             +C +AS +QL V +             K               P+++             
Sbjct:   137 NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFS 196

Query:   197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
             I  G+  A TVLVY+QDN+G   GYG+    + F + +FL GTR YR K  +GSP T++A
Sbjct:   197 IFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMA 256

Query:   257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLP-H-TKQFRFLDKAAIFKDSDM 314
              V V + RK    + SD + F+ +   P+E   +K+  P H T   RFL++A++      
Sbjct:   257 RVIVASLRKAREPMSSDSTRFYELP--PME-YASKRAFPIHSTSSLRFLNRASL-----K 308

Query:   315 SNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHI 374
             + ST    +KW L T+T+VEE K +++MLP+   T +   + AQ+ T  + Q TT++R +
Sbjct:   309 TGST----HKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRL 364

Query:   375 -GSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFA 433
               +F IP ASL  F   S+L+++ +YDR+ V   RK+   P+G+T LQR+G+G++L I  
Sbjct:   365 TNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILI 424

Query:   434 MVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRE 493
             M+ A++ E  RL+ A  HGLT+     IPLS+F L+PQ+ L+G  +AF  I +L+FF  +
Sbjct:   425 MIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQ 484

Query:   494 CPKGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTGDK-KPWLADNLNQGRLYDFYWLLA 552
              P+ MK++                        ++T  + + W+ +NLN+ RL ++Y   A
Sbjct:   485 APESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRGWIQNNLNESRLDNYYMFFA 544

Query:   553 ILSALNFVIYLAFARWYVYK 572
             +L+ LNF+++L   R+Y Y+
Sbjct:   545 VLNLLNFILFLVVIRFYEYR 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 187/559 (33%), Positives = 299/559 (53%)

Query:    17 DYKGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTN 76
             D +G P  RS  G W + + ++  E  ER+   GI+ NL  Y+T  +H G   ++N VTN
Sbjct:    17 DLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTN 76

Query:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVXXXXXXXXXXXXRPPKCNLNHGQ 136
             ++GTS++  +LG ++ D  LGRY+T  I   +  +G+            +PP+C+  + +
Sbjct:    77 WVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVE 136

Query:   137 SCIQASGMQLVVLYIXXXXXXXXXXXXKXXXXXXXXXXXXXXXPQERNQMTXXXXXXXXX 196
             +C +AS +QL V +             K               P+E+ Q           
Sbjct:   137 NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFS 196

Query:   197 ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIA 256
             I  G+L A TVLVY+QDN+G   GYG+    +   + +FL GT  YR K   GSP T++A
Sbjct:   197 IFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMA 256

Query:   257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSN 316
              V V ++RK +  +  D + F  +  +  E K      P T   RFLD+A++        
Sbjct:   257 RVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHP-TPSLRFLDRASL-------- 307

Query:   317 STTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHI-G 375
               T   +KWNL T T+VEE K ++RMLP+   T +   + AQ+ T  V Q TT++R + G
Sbjct:   308 -KTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTG 366

Query:   376 SFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMV 435
             SF IP ASL+ F   S+L+++ +YDR+ V I RK    P+G+T LQR+G+GL+  I  M+
Sbjct:   367 SFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMI 426

Query:   436 AAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP 495
              A++ E  RL+ A  HGL +    ++PL++F L+PQF L+G  ++F  + +L+FF  + P
Sbjct:   427 VASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQAP 486

Query:   496 KGMKTMXXXXXXXXXXXXXXXXXXXXXXXHKVTGDK-KPWLADNLNQGRLYDFYWLL-AI 553
             + MK++                        ++T  + + W+ +NLN+ RL D+Y+L  A+
Sbjct:   487 ESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRL-DYYYLFFAV 545

Query:   554 LSALNFVIYLAFARWYVYK 572
             L+ +NFV++L   ++YVY+
Sbjct:   546 LNLVNFVLFLVVVKFYVYR 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05085	PTR7_ARATH	No assigned EC number	0.6717	0.9813	0.9830	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030833 hypothetical protein (583 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	591
pfam00854	372	pfam00854, PTR2, POT family	5e-86
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	7e-34
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-24
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-15
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	3e-10
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	4e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.003

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  271 bits (696), Expect = 5e-86
 Identities = 138/419 (32%), Positives = 204/419 (48%), Gaps = 56/419 (13%)

Query: 99  YLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTAL 158
           + TI + + + A G  +LT+  I PSL P                +Q+ + YI LYL AL
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSP----------------VQVALFYIGLYLIAL 44

Query: 159 GTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGRE 218
           GTGG+K +VS FG+DQFD++      +   FF+WF+F I+ GSL A  +  Y+Q N+G  
Sbjct: 45  GTGGIKPNVSAFGADQFDETQ---DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101

Query: 219 WGYGICACAIVFGLVVFLSGTRRYRFK-KLVGSPLTQ-IASVFVVAWRKRHLDLPSDPSM 276
            G+G+ A  ++  L+VFL G+RRY+ K    GSP T  IA +   A + R L LP D   
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161

Query: 277 ----FFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNL-ATLT 331
                   +   +   K      HT+    +                     W L     
Sbjct: 162 LYWALEKYNKRSISQTK-----VHTR-VAVIFIPLPK--------------FWALFDQQG 201

Query: 332 DVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGS-FEIPGASLTFFFVG 390
            V  ++ ++ MLPIWA  I+   ++ Q+ T  V Q  TM+R I   FEIP AS   F   
Sbjct: 202 SVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPL 261

Query: 391 SILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARS 450
           ++L+ +P+ D ++ P+ R      +GLT  QR G+G+ + I A   AA+ E KR R A +
Sbjct: 262 AVLILLPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAA 317

Query: 451 HGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLST 509
            GLT  P   +PL + W +P+ F+ G G A    G L+F     P  M ++ T L  + 
Sbjct: 318 LGLT-SPGWTVPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  134 bits (340), Expect = 7e-34
 Identities = 105/495 (21%), Positives = 181/495 (36%), Gaps = 70/495 (14%)

Query: 35  AMILGGEACERLTTLGIAVNLVTYLT----GTMHLGNASAANTVTNFLGTSFMLCLLGGF 90
            +I   E  ER +  G+   L+ YL       +      A    + +    ++  ++GG+
Sbjct: 24  YLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGW 83

Query: 91  IADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLY 150
           +AD  LG   TI + A + A G  +L IS++                           LY
Sbjct: 84  LADRVLGTRRTIVLGAILMAIGHLVLAISSVS----------------------GPGGLY 121

Query: 151 IALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVY 210
           I L L  +GTG  K ++S    + +   DP    +    F  F+  I+IGSL A  +   
Sbjct: 122 IGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGL 177

Query: 211 IQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL 270
           +  N G   G+G+ A  ++ GLV+FL G R              I  V        +  L
Sbjct: 178 LAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV----------KGIGGVPDPNPLSFNFLL 227

Query: 271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATL 330
           P    +   I    +     +        F  +          +S    ++       + 
Sbjct: 228 PVLGGLVVMILAALLTLLLNQ------NTFSGVLLV-------ISILIAIIYFAEAFRSP 274

Query: 331 TDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTM-NRHIGSFEIPGASLTFFFV 389
              +E + ++  +P++   +IFW +Y QM +     A    NR I  FE+P A       
Sbjct: 275 KVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNP 334

Query: 390 GSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAAR 449
             I+L  P+   +   + R   +     TP+ +  +GL+L+    +   L       A  
Sbjct: 335 FFIILFSPILAALWTKLGRGNKQPS---TPI-KFALGLILAGLGFLILLL-------AGI 383

Query: 450 SHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLST 509
             G          +SV+WLV  + L   GE F     L    +  P  +K+    ++  T
Sbjct: 384 WFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438

Query: 510 LSLGFFVSSLLVSLV 524
           ++ G  +   +  L 
Sbjct: 439 VAAGQTLGGQVAGLT 453

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  107 bits (269), Expect = 2e-24
 Identities = 91/401 (22%), Positives = 161/401 (40%), Gaps = 70/401 (17%)

Query: 55  LVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT 114
           LV YL   +     +A N    F    ++  L+G  IAD++LG++ TI   + V   G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQ 174
           + ++  +     P             A  +      + L L ALGTGG+K  VS FG DQ
Sbjct: 70  LASLGAVPSLGHPLH----------DALSL------VGLALIALGTGGIKPCVSAFGGDQ 113

Query: 175 FDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGY-------GICACA 227
           F++     R +   FF++F+F I+ GSL +  +   ++ ++G            G+    
Sbjct: 114 FEERQLSLRFR---FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170

Query: 228 IVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG 287
           +   L+VF  G++ Y+ K  VG+ ++++    V A +KR                     
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR--------------------F 210

Query: 288 KKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWA 347
           +   +  P      +LD AA      M                  +   K ++R+L ++ 
Sbjct: 211 RTRSEDWPRL---HWLDWAAPKYLIRM------------------IRSTKRLLRVLFLFI 249

Query: 348 TTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIA 407
              +FW ++ Q  +    QAT M+  +G F I    +      + LL + +       + 
Sbjct: 250 PLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQ---AVNPLLVLILVPIFDYVVY 306

Query: 408 RKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAA 448
             + K     T L+++ VG++L+  A   AAL + K     
Sbjct: 307 PALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNKINPTL 347

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 78.7 bits (194), Expect = 2e-15
 Identities = 93/500 (18%), Positives = 167/500 (33%), Gaps = 90/500 (18%)

Query: 35  AMILGGEACERLTTLGIAVNLVTYL--TGTMHLGNASAANTVTNFLGTSFMLCLLGGFIA 92
             +   E  ER +  G+   L  YL     +      A      +    ++L  +G +  
Sbjct: 13  FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFG 72

Query: 93  DTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIA 152
           D   G   T+ +   V   G  +L +S                            +++  
Sbjct: 73  DRVWGTKKTMVLGGIVLMLGHFMLAMSI------------------------YPDLIFYG 108

Query: 153 LYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQ 212
           L   A+G+G  K++ S      ++  D   R+     F  F+  I+IGS  +  +   I 
Sbjct: 109 LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIA 165

Query: 213 DNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPS 272
           +N G   G+ + A  +V GL+ F +G    R                         D+ S
Sbjct: 166 ENYGYHVGFNLAAVGMVIGLLTFFAGRHMLR-------------------------DIGS 200

Query: 273 DPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSD--------MSNSTTVVINK 324
            P      D +  +GK   + L        L     +            M+ +  V+I  
Sbjct: 201 VP------DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFF 254

Query: 325 WNLAT---LTDVEEVKMVIRMLPIWATTIIFWTVYAQM-TTFSVSQATTMNRHIGSFEIP 380
           + LA    L  V   KM    + ++   ++FW +YAQM T+ +      M+  +    +P
Sbjct: 255 FRLAFKPRLDAVARNKM-YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVP 313

Query: 381 GASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALC 440
                      +++  PV   I   + RK  K P   TPL+          F +     C
Sbjct: 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKG-KDPT--TPLK----------FTL-GMLFC 359

Query: 441 EIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKT 500
               L  A S    +   A    S +++V  +     GE       L ++ +  P+ +  
Sbjct: 360 GASFLTFAASIWFAD---AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG 416

Query: 501 MSTGLFLSTLSLGFFVSSLL 520
              G++    ++G  +   L
Sbjct: 417 QMLGMWFLAQAMGSLLGGYL 436

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 27/199 (13%)

Query: 44  ERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA 103
           E  +  G+   L+ YLT  +   +  A    + +    ++  +LGGF+AD  LG  + + 
Sbjct: 21  EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80

Query: 104 IFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGL 163
           + A + A G  +L  S I PS                        LY++L +   G G  
Sbjct: 81  LGALLMAIGHVVLGASEIHPSF-----------------------LYLSLAIIVCGYGLF 117

Query: 164 KSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGI 223
           KS+VS    + ++ +DP+        F+  +   ++GS+ A     Y Q+      G+G+
Sbjct: 118 KSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGL 173

Query: 224 CACAIVFGLVVFLSGTRRY 242
            A  ++ GLV+FL G R +
Sbjct: 174 AAVGMIAGLVIFLCGNRHF 192

Length = 493

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 39/240 (16%)

Query: 36  MILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF 95
           MI   E  ER    G+   L  +    +      A  T   F    + L  +GG++ D  
Sbjct: 18  MIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL 77

Query: 96  LGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYL 155
           LG   TI + A V A G  +  +S + P L                       ++IAL  
Sbjct: 78  LGTKRTIVLGAIVLAIGYFMTGMSLLKPDL-----------------------IFIALGT 114

Query: 156 TALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNL 215
            A+G G  K++ +   S  +   DP+    +   F  F+  I+IGSL ++++   I D  
Sbjct: 115 IAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKF 170

Query: 216 GREWGYGICACAIVFGLVVFLSGTRRYR------------FKKLVGSPLTQIASVFVVAW 263
           G    Y +C   ++  L+V+ +     +            F KL+   L  +  +FV AW
Sbjct: 171 GYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW 230

Length = 489

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 32/202 (15%)

Query: 35  AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADT 94
            ++  G     L    ++  L       + L  + A   V+ F     +  LL G+++D 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 95  FLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALY 154
           F GR   + +   + A G  +L  ++ +                         +L +  +
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAFASSLW------------------------LLLVGRF 95

Query: 155 LTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN 214
           L  LG G L  + +   ++ F    P+ER +       F     +G+L    +   + ++
Sbjct: 96  LLGLGGGALYPAAAALIAEWFP---PKERGRA---LGLFSAGFGLGALLGPLLGGLLAES 149

Query: 215 LGREWGYGICACAIVFGLVVFL 236
           LG  W + I A   +   ++ L
Sbjct: 150 LGWRWLFLILAILGLLLALLLL 171

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	591
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.9
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.9
PRK03699	394	putative transporter; Provisional	99.9
PRK09952	438	shikimate transporter; Provisional	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
PRK03633	381	putative MFS family transporter protein; Provision	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.89
PRK10091	382	MFS transport protein AraJ; Provisional	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
TIGR00898	505	2A0119 cation transport protein.	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
PRK11043	401	putative transporter; Provisional	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
KOG0254	513	consensus Predicted transporter (major facilitator	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.84
PRK11010	491	ampG muropeptide transporter; Validated	99.84
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.83
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.83
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
PRK11902	402	ampG muropeptide transporter; Reviewed	99.8
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.79
PRK10429	473	melibiose:sodium symporter; Provisional	99.79
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.78
TIGR00901	356	2A0125 AmpG-related permease.	99.78
PRK09669	444	putative symporter YagG; Provisional	99.78
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.77
PRK09848	448	glucuronide transporter; Provisional	99.76
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.75
KOG2615	451	consensus Permease of the major facilitator superf	99.73
TIGR00805	633	oat sodium-independent organic anion transporter.	99.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.73
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.73
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.72
PF13347	428	MFS_2: MFS/sugar transport protein	99.72
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.71
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.71
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.71
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.69
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.67
PRK11462	460	putative transporter; Provisional	99.67
KOG2533	495	consensus Permease of the major facilitator superf	99.67
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.66
PTZ00207	591	hypothetical protein; Provisional	99.66
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.66
COG2211	467	MelB Na+/melibiose symporter and related transport	99.65
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.5
PRK10642	490	proline/glycine betaine transporter; Provisional	99.48
PRK09952	438	shikimate transporter; Provisional	99.48
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.47
PRK15011	393	sugar efflux transporter B; Provisional	99.46
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.45
KOG2563	480	consensus Permease of the major facilitator superf	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.41
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.41
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.38
PRK03699	394	putative transporter; Provisional	99.38
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.38
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.38
PRK05122	399	major facilitator superfamily transporter; Provisi	99.37
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.36
PRK09705	393	cynX putative cyanate transporter; Provisional	99.35
PRK11663	434	regulatory protein UhpC; Provisional	99.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.34
PRK09528	420	lacY galactoside permease; Reviewed	99.34
TIGR00893	399	2A0114 d-galactonate transporter.	99.33
PRK09874	408	drug efflux system protein MdtG; Provisional	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.31
PRK10489	417	enterobactin exporter EntS; Provisional	99.31
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.3
TIGR00891	405	2A0112 putative sialic acid transporter.	99.3
PRK03545	390	putative arabinose transporter; Provisional	99.29
PRK15075	434	citrate-proton symporter; Provisional	99.29
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.27
PRK03893	496	putative sialic acid transporter; Provisional	99.26
PRK11010	491	ampG muropeptide transporter; Validated	99.26
PRK12382	392	putative transporter; Provisional	99.26
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.26
PRK03633	381	putative MFS family transporter protein; Provision	99.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.19
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.18
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.17
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.15
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.15
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.14
TIGR00900	365	2A0121 H+ Antiporter protein.	99.14
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.14
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.14
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.13
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.12
PLN00028	476	nitrate transmembrane transporter; Provisional	99.12
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.11
PRK10504	471	putative transporter; Provisional	99.1
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.1
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.1
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.09
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.09
PRK12307	426	putative sialic acid transporter; Provisional	99.07
PRK10091	382	MFS transport protein AraJ; Provisional	99.07
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.06
TIGR00895	398	2A0115 benzoate transport.	99.05
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.05
KOG3626	735	consensus Organic anion transporter [Secondary met	99.04
PRK11902	402	ampG muropeptide transporter; Reviewed	99.04
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.02
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.02
PRK10133	438	L-fucose transporter; Provisional	98.99
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.99
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.99
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.98
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.98
PRK10054	395	putative transporter; Provisional	98.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
KOG2532	466	consensus Permease of the major facilitator superf	98.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.9
PF13347	428	MFS_2: MFS/sugar transport protein	98.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.87
TIGR00901	356	2A0125 AmpG-related permease.	98.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.85
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.83
PRK09848	448	glucuronide transporter; Provisional	98.82
KOG3762	618	consensus Predicted transporter [General function	98.82
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.81
PRK11043	401	putative transporter; Provisional	98.8
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.78
PRK10429	473	melibiose:sodium symporter; Provisional	98.76
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.74
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.73
KOG0569	485	consensus Permease of the major facilitator superf	98.73
TIGR00898	505	2A0119 cation transport protein.	98.72
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.71
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.69
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.69
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.63
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.63
PRK09669	444	putative symporter YagG; Provisional	98.59
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.57
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.47
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.3
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.29
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.28
COG2211	467	MelB Na+/melibiose symporter and related transport	98.28
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.25
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.23
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.22
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.22
PRK11462	460	putative transporter; Provisional	98.22
COG0477	338	ProP Permeases of the major facilitator superfamil	98.19
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.18
KOG2533	495	consensus Permease of the major facilitator superf	98.14
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.13
KOG0637	498	consensus Sucrose transporter and related proteins	98.02
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.01
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.99
KOG3762	618	consensus Predicted transporter [General function	97.97
PF12832	77	MFS_1_like: MFS_1 like family	97.97
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.91
TIGR00805	633	oat sodium-independent organic anion transporter.	97.9
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.84
KOG0254	513	consensus Predicted transporter (major facilitator	97.82
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.81
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.78
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.71
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.56
KOG2563	480	consensus Permease of the major facilitator superf	97.54
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.54
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.54
PTZ00207	591	hypothetical protein; Provisional	97.35
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.06
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.97
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.88
KOG3626	735	consensus Organic anion transporter [Secondary met	96.84
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.84
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.84
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.82
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.79
KOG2615	451	consensus Permease of the major facilitator superf	96.7
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.66
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.46
PRK03612	521	spermidine synthase; Provisional	96.3
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.97
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.08
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.65
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.64
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.0
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.92
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.69
KOG0637	498	consensus Sucrose transporter and related proteins	93.67
COG3202	509	ATP/ADP translocase [Energy production and convers	93.41
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	92.22
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.19
KOG3097	390	consensus Predicted membrane protein [Function unk	91.66
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	91.37
KOG3880	409	consensus Predicted small molecule transporter inv	90.72
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	87.7
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.91
KOG3810	433	consensus Micronutrient transporters (folate trans	85.68
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.16
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	81.44
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	81.0

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-44  Score=391.93  Aligned_cols=535  Identities=51%  Similarity=0.835  Sum_probs=478.8

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHH
Q 007736           27 KTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFA  106 (591)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~  106 (591)
                      ++..|++...++..+.+++.++|++..++..|+++.+|.+...+......+.....+.++.+++++|.|+||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCC-CCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736          107 TVQAAGVTILTISTIIPSLRPPKC-NLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ  185 (591)
Q Consensus       107 ~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (591)
                      ++..+|..++..+..+|.+.++-| ...|+-.|..+.......++.++.+.++|.|+..+...++.+|++++..+.++..
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999999999998888776 5667778999998899999999999999999999999999999999766666666


Q ss_pred             cchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhh
Q 007736          186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRK  265 (591)
Q Consensus       186 r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (591)
                      +.+.++|+++..++|..++-.+..++++..||.+.|.++.++.++++++++...+.++.++|.++|.....+++..+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHH
Q 007736          266 RHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI  345 (591)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (591)
                      ++...+.++... +..      .......++++.++++|++....+.+.  ++.....+|+++...++++.|..++.+++
T Consensus       272 ~~~~~~~~~~~~-~~~------~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi  342 (571)
T KOG1237|consen  272 RKAVVSLDPEEL-YYD------CTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPI  342 (571)
T ss_pred             HhccCCCcchhc-ccc------ccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHH
Confidence            999888765444 110      112222345678889999988866544  33345688999999999999999999999


Q ss_pred             HHHHHHHHHHhccccceeeeeeccccccccc-cccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHH
Q 007736          346 WATTIIFWTVYAQMTTFSVSQATTMNRHIGS-FEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIG  424 (591)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~  424 (591)
                      |...+.+++.+.|+.+.+..|...|++++++ +.+|++.+.....+..++..|+.+++..|+.||..+++.+...+.++.
T Consensus       343 ~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig  422 (571)
T KOG1237|consen  343 WLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIG  422 (571)
T ss_pred             HHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheee
Confidence            9999999999999999999999999999987 999999999999999999999999999999999888766789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHH
Q 007736          425 VGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTG  504 (591)
Q Consensus       425 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g  504 (591)
                      +|+++..+++...+..+.+|.+....     +.+...+++.+|++++++++|+++.+...+..++..+.+|++||+.+++
T Consensus       423 ~G~~~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~a  497 (571)
T KOG1237|consen  423 IGLVLSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATA  497 (571)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHH
Confidence            99999999999999999888876543     1111157999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCCccc-cccCCcchHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 007736          505 LFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLA-DNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKR  575 (591)
Q Consensus       505 l~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~  575 (591)
                      ++.+..++|+.++..++..+...++...+|++ +++|.++.+.+||+++....+....+..+.++++.++.+
T Consensus       498 l~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  498 LWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            99999999999999999999876533357999 999999999999999999999998888888777766543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=8.8e-37  Score=317.59  Aligned_cols=468  Identities=23%  Similarity=0.312  Sum_probs=354.3

Q ss_pred             CCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch
Q 007736           22 PAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMH----LGNASAANTVTNFLGTSFMLCLLGGFIADTFLG   97 (591)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G   97 (591)
                      +.++...+++|.++.++..+++|+++||++...+..|++.+++    +|.+++.-+.+.|...-.+.++++||++||++|
T Consensus        11 ~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG   90 (498)
T COG3104          11 TLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG   90 (498)
T ss_pred             ccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344556689999999999999999999999999999998888    999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCC
Q 007736           98 RYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDD  177 (591)
Q Consensus        98 rk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  177 (591)
                      +||++..+.++.++|.++++.+..                      .....++++.++.++|.|.+.+++.++++|++|+
T Consensus        91 ~~~tI~lGail~~iGh~~L~~~~~----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~  148 (498)
T COG3104          91 TRRTIVLGAILMAIGHLVLAISSV----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK  148 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccc----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence            999999999999999999987520                      2566789999999999999999999999999999


Q ss_pred             CChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeecc--CCCChhh--
Q 007736          178 SDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKK--LVGSPLT--  253 (591)
Q Consensus       178 ~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--  253 (591)
                      ++++    |..++++++++.|+|+.++|++.+++.+.+||...|.+.++.+.++++.+++.+++.....  ++..|.+  
T Consensus       149 ~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~  224 (498)
T COG3104         149 DDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN  224 (498)
T ss_pred             CCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence            9976    9999999999999999999999999999999999999999999999999988887654432  2222111  


Q ss_pred             ----HHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhcc-CCCCCccccccccccccC
Q 007736          254 ----QIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFK-DSDMSNSTTVVINKWNLA  328 (591)
Q Consensus       254 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  328 (591)
                          .....+......-          +..              +...+..+......... ....-    .+...|   
T Consensus       225 ~~~~~~~~~~~~~~~~~----------~~~--------------~l~~~~~~~~~~~~~i~~~~~~~----~~~~~~---  273 (498)
T COG3104         225 FLLPVLGGLVVMILAAL----------LTL--------------LLNQNTFSGVLLVISILIAIIYF----AEAFRS---  273 (498)
T ss_pred             hhhhhHHHHHHHHHHHH----------HHH--------------HHHHHHHHHHHHHHHHHHHHHHH----HHHhcc---
Confidence                1111111111000          000              00000011100000000 00000    001111   


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeee-ccccccccccccccccccccchhhhhhhhhhhhhhhhhhh
Q 007736          329 TLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQA-TTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIA  407 (591)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  407 (591)
                      .+.. +++|+++..++++.+.++||+.+.|+++.+..+. ...++++.++++|+++.+++|++.+++++|+.++++.|+.
T Consensus       274 ~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~  352 (498)
T COG3104         274 PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLG  352 (498)
T ss_pred             CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhh
Confidence            2223 6788999999999999999999999998665543 4555564568999999999999999999999999998877


Q ss_pred             hhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhh
Q 007736          408 RKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQL  487 (591)
Q Consensus       408 ~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~  487 (591)
                      ++..    .++...++.+|+.++..+++++.......       |   +++  ...+.+|++..++++++||.+..|...
T Consensus       353 ~~~~----~ps~~~KFalGl~l~g~~fl~l~~~~~~~-------~---~~~--~~~s~~~lil~y~l~s~gEL~iSpvGL  416 (498)
T COG3104         353 RGNK----QPSTPIKFALGLILAGLGFLILLLAGIWF-------G---GPS--GLVSVWWLVLSYVLQSFGELFISPVGL  416 (498)
T ss_pred             cCCC----CCCcchHHHHHHHHHHHHHHHHHHHHHhh-------c---CCC--CCcCHHHHHHHHHHHHHHHHHhCHHHH
Confidence            6642    27888999999999999999888753211       1   000  467999999999999999999999999


Q ss_pred             eeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          488 DFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFAR  567 (591)
Q Consensus       488 ~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  567 (591)
                      +++++.+|+.+.+..+|++.++...+..++..+.+......    .    ..+......+|+..+...++.........+
T Consensus       417 s~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~----~----~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~  488 (498)
T COG3104         417 SMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD----P----AYTAFIEGRVFGTIGVVAIVIGILLLLLSP  488 (498)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc----h----hhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999888877322100    0    001111234677777777777666666655


Q ss_pred             hccc
Q 007736          568 WYVY  571 (591)
Q Consensus       568 ~~~~  571 (591)
                      +.++
T Consensus       489 ~~~r  492 (498)
T COG3104         489 KLNR  492 (498)
T ss_pred             HHHH
Confidence            5443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=2.7e-35  Score=321.12  Aligned_cols=464  Identities=18%  Similarity=0.247  Sum_probs=330.5

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHH
Q 007736           25 RSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAI  104 (591)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~  104 (591)
                      ...++++|.++.+++.+++++.++|++..+++.|+++++|++..+..++.+.+.....+..+++|+++||++||||++.+
T Consensus         7 ~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207          7 MGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             cchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            34457899999999999999999999999999999999999999999999999999999999999999994499999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 007736          105 FATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERN  184 (591)
Q Consensus       105 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  184 (591)
                      +.++++++.++++++..                       ....++++|+++++|.|...|+..++++|++|+++++   
T Consensus        87 g~~~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~---  140 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR---  140 (489)
T ss_pred             HHHHHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh---
Confidence            99999999999988621                       2234567899999999999999999999999988632   


Q ss_pred             ccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeec--cCCCChhhHHHHHH---
Q 007736          185 QMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFK--KLVGSPLTQIASVF---  259 (591)
Q Consensus       185 ~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---  259 (591)
                       |.+++++++++.|+|..+||.+++++.++.||++.|++..+..+++++.+....+..++.  ++++++.+.....+   
T Consensus       141 -~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~  219 (489)
T PRK10207        141 -LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLL  219 (489)
T ss_pred             -hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHH
Confidence             688999999999999999999999999999999999998766665555555544333222  22222211101000   


Q ss_pred             -----HHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhh-hHHhhhccCCCCCccccccccccccCccchh
Q 007736          260 -----VVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRF-LDKAAIFKDSDMSNSTTVVINKWNLATLTDV  333 (591)
Q Consensus       260 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (591)
                           ...... ..+.                          ...... ..........         ..-++....+. 
T Consensus       220 ~~~~~~~~~~~-~~~~--------------------------~~~~~~~~~~~~~i~~~---------~f~~~~~~~~~-  262 (489)
T PRK10207        220 GSVVMIFVCAW-LMHN--------------------------VEVANLVLIVLSIVVTI---------IFFREAFKLDK-  262 (489)
T ss_pred             HHHHHHHHHHH-HHhh--------------------------hhHHHHHHHHHHHHHHH---------HHHHHHhcCCH-
Confidence                 000000 0000                          000000 0000000000         00000001112 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccceeeeeec-cccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcC
Q 007736          334 EEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQAT-TMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFK  412 (591)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~  412 (591)
                      ..+++......++....++|..+.|..+.+..+.+ .++.+..++.++++.+.++|++..++..|+.+++.+|+.+|.. 
T Consensus       263 ~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~-  341 (489)
T PRK10207        263 TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK-  341 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC-
Confidence            23444555666677788899999998664443332 4555566778888889999999998999999988877766532 


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecc
Q 007736          413 TPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLR  492 (591)
Q Consensus       413 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~  492 (591)
                         .+++..++.+|+++++++++.+.......   .      ..+   ...+.+|+++.+++.++||.+..|..++++.+
T Consensus       342 ---~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~------~~~---~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~  406 (489)
T PRK10207        342 ---DLSMPMKFTLGMFLCSLGFLTAAAAGMWF---A------DAQ---GLTSPWFIVLVYLFQSLGELFISALGLAMIAA  406 (489)
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHhh---c------CCC---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence               26888899999999999987765432100   0      000   23577888999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007736          493 ECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYK  572 (591)
Q Consensus       493 ~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  572 (591)
                      .+|++++|.++|++++.+++|+.+|..+.+.........++.    ...+++..+|..+++.+++..+++++..++.++.
T Consensus       407 ~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        407 LVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987663211000111    0112345678888888888777777766655544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=4.1e-34  Score=311.47  Aligned_cols=452  Identities=18%  Similarity=0.251  Sum_probs=329.1

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT--MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIF  105 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~  105 (591)
                      .++++.++.+++.+++++.++|++.++++.|++++  +|++..+.+++.+.+.+++.++++++|+++||++|||+++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            45778899999999999999999999999999987  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736          106 ATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ  185 (591)
Q Consensus       106 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (591)
                      .++.+++.++++++                        .+...+++++++.|+|.|...++..++++|++|+++.+   +
T Consensus        86 ~~~~~~g~~~~~~~------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~  138 (475)
T TIGR00924        86 GIVLMLGHFMLAMS------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---R  138 (475)
T ss_pred             HHHHHHHHHHHHhc------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---c
Confidence            99999999888875                        35667788999999999999999999999999876421   1


Q ss_pred             cchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhH----HHH----
Q 007736          186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQ----IAS----  257 (591)
Q Consensus       186 r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----  257 (591)
                      |++++++++++.|+|+.+||.+++++.+++||++.|++.++..+++.+.+....+..++.++++++.+.    ..+    
T Consensus       139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (475)
T TIGR00924       139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA  218 (475)
T ss_pred             ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence            888999999999999999999999999999999999998876666666555554443322221111100    000    


Q ss_pred             ---HHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhh-hHHhhhccCCCCCccccccccccccCccchh
Q 007736          258 ---VFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRF-LDKAAIFKDSDMSNSTTVVINKWNLATLTDV  333 (591)
Q Consensus       258 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (591)
                         .+....+.... ....                     ...+.... ............      ..++    ..++ 
T Consensus       219 ~~~~~~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~-  265 (475)
T TIGR00924       219 LLAALALVFFCAWL-MHHV---------------------VIANILLMTVTLAVIIFFFRL------AFKP----RLDA-  265 (475)
T ss_pred             HHHHHHHHHHHHHH-Hhcc---------------------HHHHHHHHHHHHHHHHHHHHH------HHhc----cCCH-
Confidence               00000000000 0000                     00000000 000000000000      0000    0112 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccceeee-eeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcC
Q 007736          334 EEVKMVIRMLPIWATTIIFWTVYAQMTTFSVS-QATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFK  412 (591)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~  412 (591)
                      .++++....+.+++..+++|+.+.|+.+.+.. +...++.+++++.+|++.+.++|.+.++++.|+.+++..++.||.. 
T Consensus       266 ~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~-  344 (475)
T TIGR00924       266 VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK-  344 (475)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC-
Confidence            23344455778888899999999999875433 3345677777888999999999999999999999987766655522 


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecc
Q 007736          413 TPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLR  492 (591)
Q Consensus       413 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~  492 (591)
                         ..+...++.+|+++.+++++.+++...    ..+ ++        .+.+++|+++.+++.++||.+..|..++++.+
T Consensus       345 ---~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~-~~--------~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~  408 (475)
T TIGR00924       345 ---DPTTPLKFTLGMLFCGASFLTFAASIW----FAD-AG--------GLTSPWFMVLIYLFQTLGELMISPLGLSWWTK  408 (475)
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHh----hcC-CC--------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence               256667889999999999988876421    000 00        25689999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007736          493 ECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYV  570 (591)
Q Consensus       493 ~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  570 (591)
                      .+|+++||+++|++.+...+|..+++.+.+......    +          ...+|...++.+++..++.++..+..+
T Consensus       409 ~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       409 IAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----G----------VTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----c----------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988664321    1          234666777777777776666666544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2.3e-33  Score=302.25  Aligned_cols=417  Identities=18%  Similarity=0.251  Sum_probs=308.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      ++++.++.+++.+++++.++|++..+++.|+++.+|++..+.+.+.+.+.....++++++|+++||++||||++.++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            37888999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++.++++...                       .+...++++..+.++|.|...++..++++|++|+++++    |.+
T Consensus        86 ~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~s  138 (493)
T PRK15462         86 MAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDG  138 (493)
T ss_pred             HHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccc
Confidence            999987766431                       11223445555666788888888899999999987433    999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccC-CCChhh--HHHHH-----HH
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKL-VGSPLT--QIASV-----FV  260 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~-----~~  260 (591)
                      ++++++...|+|+.++|.+++++.+.+||++.|.++++.++++++.++...+...+... +++|.+  .....     ..
T Consensus       139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (493)
T PRK15462        139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV  218 (493)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887777777666655544322110 111111  00000     00


Q ss_pred             HH-----HhhcccCCCCCCCCcccccCCccccccccccCCCCcchhh-hHHhhhccCCCCCccccccccccccCccchhH
Q 007736          261 VA-----WRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRF-LDKAAIFKDSDMSNSTTVVINKWNLATLTDVE  334 (591)
Q Consensus       261 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (591)
                      ..     +.....                          . .+.... +......... .      ...-.+  ...+.+
T Consensus       219 ~~~~~~~~~~~~~--------------------------~-~~~~~~~~~~~~~~~~~-~------~~~~~~--~~~~~~  262 (493)
T PRK15462        219 LLVATPALITVLF--------------------------W-KEWSVYALIVATIIGLG-V------LAKIYR--KAENQK  262 (493)
T ss_pred             HHHHHHHHHHHHH--------------------------H-HHHHHHHHHHHHHHHHH-H------HHHHHH--hcCCHH
Confidence            00     000000                          0 000000 0000000000 0      000000  011225


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccceeeee-eccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCC
Q 007736          335 EVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQ-ATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKT  413 (591)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~  413 (591)
                      ++|++...+.++...++||+.+.|.++.+... ..++|++++++++|+++..++|++.+++++|+..++..++.||    
T Consensus       263 er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----  338 (493)
T PRK15462        263 QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----  338 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----
Confidence            68888889999999999999999998744433 3578888899999999999999999999999999998665433    


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeeccc
Q 007736          414 PQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRE  493 (591)
Q Consensus       414 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~  493 (591)
                      ++.++...|+.+|+++++++++++......    .       +++  ...+.+|++..++++++||.+..|...+++.+.
T Consensus       339 ~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~-------~~~--~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~l  405 (493)
T PRK15462        339 NRTVRIWGKFALGLGLMSAGFCILTLSARW----S-------AMY--GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRI  405 (493)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----c-------CCC--CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHh
Confidence            223678889999999999999888764311    0       111  247889999999999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 007736          494 CPKGMKTMSTGLFLSTL-SLGFFVSSLLVSLVH  525 (591)
Q Consensus       494 ~p~~~rg~~~gl~~~~~-~lg~~lg~~l~~~i~  525 (591)
                      +|++.+|+.||++.... .+|+.+++.+.+...
T Consensus       406 aP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~  438 (493)
T PRK15462        406 EIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS  438 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998754 788888887777663

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=7.1e-33  Score=303.54  Aligned_cols=460  Identities=18%  Similarity=0.221  Sum_probs=324.2

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHH
Q 007736           26 SKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIF  105 (591)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~  105 (591)
                      +..++++.++.+++.+++++.++|++..+++.|+++++|++.++.+++.+.+........+++|+++||++|||+++.++
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            33467778999999999999999999999999999999999999999888887777777789999999944999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736          106 ATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ  185 (591)
Q Consensus       106 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (591)
                      .++.+++..+++++.                       .+...+.++++++++|.|...+...++++|++|+++++    
T Consensus        95 ~~~~~ig~~l~~~~~-----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----  147 (500)
T PRK09584         95 AIVLAIGYALVAWSG-----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----  147 (500)
T ss_pred             HHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----
Confidence            999999988887752                       13455678899999999999999999999999876532    


Q ss_pred             cchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeec--cCCCChhhHH--H----H
Q 007736          186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFK--KLVGSPLTQI--A----S  257 (591)
Q Consensus       186 r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----~  257 (591)
                      |.+++++++++.++|+.+||.+++++.+++||++.|++.++..+++.+.++...+..+++  ++++++.+..  .    .
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVG  227 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHH
Confidence            567889999999999999999999999999999999998876666655544433322221  1211111110  0    0


Q ss_pred             HHHHHH-hhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHH
Q 007736          258 VFVVAW-RKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEV  336 (591)
Q Consensus       258 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (591)
                      ...... .......++.                      .............. ..        ....   ...++ .++
T Consensus       228 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~-~~--------~~~~---~~~~~-~~~  272 (500)
T PRK09584        228 VVALIAIATWLLHNQEI----------------------ARMALGVVALGIVV-IF--------GKEA---FAMKG-AAR  272 (500)
T ss_pred             HHHHHHHHHHHHhcchH----------------------HHHHHHHHHHHHHH-HH--------HHHH---hhcCH-HHH
Confidence            000000 0000000000                      00000000000000 00        0000   01112 345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccceeeeee-ccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCC
Q 007736          337 KMVIRMLPIWATTIIFWTVYAQMTTFSVSQA-TTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQ  415 (591)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~  415 (591)
                      ++.+..+.++...+++|+.+.|+++.+..+. ...+.++.++.++++.+.++|.+..++..|+.++...|+.+|      
T Consensus       273 ~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r------  346 (500)
T PRK09584        273 RKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR------  346 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC------
Confidence            5555667777888999999999998766543 234555667788899999999999999999999887555444      


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCC
Q 007736          416 GLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP  495 (591)
Q Consensus       416 ~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p  495 (591)
                       .++.+++.+|+++++++++.+.....    ..+.+         ...+.+|+++.+++.++||.+..|...+++.+.+|
T Consensus       347 -~~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~~---------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP  412 (500)
T PRK09584        347 -LPMPHKFAIGMVLCSGAFLVLPLGAK----FANDA---------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVP  412 (500)
T ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHHHH----hcCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCc
Confidence             45678999999999999999876531    11111         24677889999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccc-CCcchHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007736          496 KGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNL-NQGRLYDFYWLLAILSALNFVIYLAFARWYVYK  572 (591)
Q Consensus       496 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~-~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  572 (591)
                      +++||+.+|++.+...+|+.+++.+.+......     -..|.. ..+.+..+|..+++.+++..++++...++.++.
T Consensus       413 ~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        413 QRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-----NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998899998888876543110     000100 112244677777777776666666666655544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=1.1e-24  Score=232.21  Aligned_cols=376  Identities=14%  Similarity=0.068  Sum_probs=249.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      +.++++..+.+..+...++.....+.+|.|+++++|.+..+.+++.+.+.++..+++++.|+++||+ ||||++..+.++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG   90 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence            4456788888889999999999999999999999999999999999999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++...+.++.....                ....+...+++.|+++|++.+...+...+++.|.+|+++      |++
T Consensus        91 ~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (399)
T PRK05122         91 CALSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGR  148 (399)
T ss_pred             HHHHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hcc
Confidence            8887776655421110                000256678999999999999999998899999999998      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhccc
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHL  268 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (591)
                      +.++.....++|..++|.+++.+.+..||+..+++..+..++..+   ...+. +++++++++                 
T Consensus       149 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~-----------------  207 (399)
T PRK05122        149 VISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL---LARPR-PAVPPVKGE-----------------  207 (399)
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---HHhcC-CCCCCCCcc-----------------
Confidence            999998999999999999999999989999888766554332222   11111 111000000                 


Q ss_pred             CCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHH-HHHHH
Q 007736          269 DLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRM-LPIWA  347 (591)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  347 (591)
                                                  +                         .++       .+..|..... ....+
T Consensus       208 ----------------------------~-------------------------~~~-------~~~~~~~~~~~~~~~~  227 (399)
T PRK05122        208 ----------------------------R-------------------------LPF-------RRVLGRVWPYGMGLAL  227 (399)
T ss_pred             ----------------------------c-------------------------hhH-------HHHHHHHHHHHHHHHH
Confidence                                        0                         000       0000111110 00111


Q ss_pred             HHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHH
Q 007736          348 TTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGL  427 (591)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~  427 (591)
                      ....+.......+.++...  +..        ..........+..++..++.+++.+|..+           ++.+..+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~-----------~~~~~~~~  286 (399)
T PRK05122        228 ASIGFGTIATFITLYYAAR--GWD--------GAALALTLFGVAFVGARLLFGNLINRLGG-----------LRVAIVSL  286 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHc--ccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHH
Confidence            1111111111111111110  110        01111222233334444555555533322           24466677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHH
Q 007736          428 VLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFL  507 (591)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~  507 (591)
                      .+.+++++.+...                      .+.+.+++..++.|++.+...|.....+.+..|++.||+++|+++
T Consensus       287 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  344 (399)
T PRK05122        287 LVEILGLLLLWLA----------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYS  344 (399)
T ss_pred             HHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            7777776655542                      133444566788888888888887777888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007736          508 STLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAF  565 (591)
Q Consensus       508 ~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  565 (591)
                      ....+|..+++.+.+.+.+..+              ++..|++.++.++++.++.+++
T Consensus       345 ~~~~~g~~~~~~~~g~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        345 VFLDLSLGITGPLAGLVASWFG--------------YPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--------------HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998875321              3456777777777766555443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=4.8e-25  Score=234.58  Aligned_cols=374  Identities=12%  Similarity=0.093  Sum_probs=243.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      +|..++.+.+..++.....+...+.+| .+.+++|.+..+.+++.+.+.+++.++.++.|+++||+ ||||++..+.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence            354566666666665555554434444 56778999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.+++.++                        ++.+.+++.|+++|++.+...+...+++.|++|+++      |+++
T Consensus        85 ~~~~~~~~~~------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  134 (390)
T PRK03545         85 IASHVLSALA------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQA  134 (390)
T ss_pred             HHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhH
Confidence            9999988886                        588899999999999999888889999999999998      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccC
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLD  269 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (591)
                      +++...+.++|..++|.+++.+.+.+||++.|++.++..++..+......++.+++  ++++.+                
T Consensus       135 ~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~----------------  196 (390)
T PRK03545        135 LSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLK----------------  196 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHH----------------
Confidence            99999999999999999999999989999999988766555444333322221100  000000                


Q ss_pred             CCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHH-HHHHHHH
Q 007736          270 LPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIR-MLPIWAT  348 (591)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  348 (591)
                                                        +...                         ....+.+.. ....+..
T Consensus       197 ----------------------------------~~~~-------------------------~~~~~~~~~~~~~~~~~  217 (390)
T PRK03545        197 ----------------------------------SLPL-------------------------LFRRPALVSLYLLTVVV  217 (390)
T ss_pred             ----------------------------------HHHH-------------------------HHhCcHHHHHHHHHHHH
Confidence                                              0000                         000011111 1111112


Q ss_pred             HHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHH
Q 007736          349 TIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLV  428 (591)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~  428 (591)
                      ....+..+++...+... ..+.+..      ..+.......+..+++..+.+++.+|..+            +.+.++..
T Consensus       218 ~~~~~~~~~~~~~~l~~-~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l~dr~~~------------~~~~~~~~  278 (390)
T PRK03545        218 VTAHFTAYSYIEPFVQQ-VAGLSEN------FATLLLLLFGGAGIIGSVLFSRLGNRHPS------------GFLLIAIA  278 (390)
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCcc------HHHHHHHHHHHHHHHHHHHHHHHhhccch------------hHHHHHHH
Confidence            22222222222222211 1111111      11222223333444444555544432221            23455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHH
Q 007736          429 LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLS  508 (591)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~  508 (591)
                      +..++...+...                     ..+.+.+++..++.|++.....+.....+.+..| +.|++++|+++.
T Consensus       279 ~~~~~~~~l~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~  336 (390)
T PRK03545        279 LLLVCLLLLLPA---------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSG  336 (390)
T ss_pred             HHHHHHHHHHHH---------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence            555554433322                     1234444556677788877666766777778777 578999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          509 TLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFAR  567 (591)
Q Consensus       509 ~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  567 (591)
                      ...+|..+|+.+.|++.+..+              +...|+..+.+.+++.++++...+
T Consensus       337 ~~~~g~~~G~~~~G~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        337 IFNIGIGAGALLGNQVSLHLG--------------LSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhccC--------------hhHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999986432              345677777777777776666543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=8.3e-25  Score=234.84  Aligned_cols=395  Identities=13%  Similarity=0.058  Sum_probs=249.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .+..++...++...+.......+|.+.+ +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~   95 (417)
T PRK10489         18 AFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG   95 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence            3445566677777777766777777765 5678999999999999999999999999999998 9999999888877777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .++++......                   ..+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++
T Consensus        96 ~~~~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (417)
T PRK10489         96 FIGLALNAFLP-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI  150 (417)
T ss_pred             HHHHHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence            66654321100                   0367778889999999988888888899999999988      9999999


Q ss_pred             hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccC-CCChhhHHHHHHHHHHhhcccCCC
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKL-VGSPLTQIASVFVVAWRKRHLDLP  271 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  271 (591)
                      .+...++|..+||.+++.+.+..+|++.|++.++..++..+..+. .++.+.++. ++++.+                  
T Consensus       151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~------------------  211 (417)
T PRK10489        151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHPLR------------------  211 (417)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccchH------------------
Confidence            999999999999999999998889999998877665554443322 222110000 000000                  


Q ss_pred             CCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHH
Q 007736          272 SDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTII  351 (591)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (591)
                                                   +..                   ..++     ...+.+.+............
T Consensus       212 -----------------------------~~~-------------------~~~~-----~~~~~~~~~~~~~~~~~~~~  238 (417)
T PRK10489        212 -----------------------------SLL-------------------AGFR-----FLLASPVVGGIALLGGLLTM  238 (417)
T ss_pred             -----------------------------HHH-------------------HHHH-----HHHcChHHHHHHHHHHHHHH
Confidence                                         000                   0000     00000111111111111111


Q ss_pred             HHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHH
Q 007736          352 FWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSI  431 (591)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~  431 (591)
                      ......+.+.+. ....+.+..      ..+.+.....++.+++..+.+++.    +|.       .+.+.+..+.++.+
T Consensus       239 ~~~~~~~~p~~~-~~~~g~~~~------~~g~~~~~~~~g~~ig~~~~~~l~----~~~-------~~~~~l~~~~~~~~  300 (417)
T PRK10489        239 ASAVRVLYPALA-DEVWQMGAA------QIGLLYAAVPLGAALGALTSGWLA----HSA-------RPGLLMLLSTLGSF  300 (417)
T ss_pred             HHhHHHhhHHHH-HhccCCChh------HhHHHHHHHHHHHHHHHHHHHHhh----hcc-------CcchHHHHHHHHHH
Confidence            111111221111 111111110      112222233333444444444333    331       12234566777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHH
Q 007736          432 FAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLS  511 (591)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~  511 (591)
                      ++++.+...                      .+.+.+....++.|++.+...+..++++.+..|++.||+++|+++....
T Consensus       301 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  358 (417)
T PRK10489        301 LAVGLFGLM----------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNV  358 (417)
T ss_pred             HHHHHHHcc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence            666655432                      2344445566777888887777778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 007736          512 LGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEG  580 (591)
Q Consensus       512 lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  580 (591)
                      +|..+|+.+.|++.+..+              ....++..++..++..++.+...+++|+++++|++++
T Consensus       359 ~g~~~g~~l~G~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        359 TGDAIGAALLGGLGAMMT--------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             hhHhHHHHHHHHHHHHhc--------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            999999999999986432              2235555666666666666666777777777665543

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=3.2e-24  Score=228.32  Aligned_cols=374  Identities=11%  Similarity=0.078  Sum_probs=243.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .+.++.+.+..++...+.....+.+|.|+.+++|+|..+.+++.+.+.+++.+++++.|+++||+ ||||++.++.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence            44667777778888888888889999999999999999999999999999999999999999998 99999999988777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++.+........+.                ....+...++++|+++|++.+...+...+++.|.+|+++      |++++
T Consensus        93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~  150 (392)
T PRK12382         93 LAGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVM  150 (392)
T ss_pred             HHHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhh
Confidence            66544332211110                001477889999999999999888888889999999998      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCC
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL  270 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (591)
                      ++...+.++|..++|.+++++.+.+||++.+.+..+..++..   ... ++.++++++++.                   
T Consensus       151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~-------------------  207 (392)
T PRK12382        151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHAGE-------------------  207 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCccc-------------------
Confidence            999999999999999999999888999987665544322221   111 111111110000                   


Q ss_pred             CCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHH-HHHHHHH
Q 007736          271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRM-LPIWATT  349 (591)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  349 (591)
                                                ..  +..                              +..|.+... .......
T Consensus       208 --------------------------~~--~~~------------------------------~~~~~~~~~~~~~~l~~  229 (392)
T PRK12382        208 --------------------------RP--SLW------------------------------SVVGLIWKPGLGLALQG  229 (392)
T ss_pred             --------------------------Cc--hHH------------------------------HHHHHHHHhHHHHHHHH
Confidence                                      00  000                              000000000 0011111


Q ss_pred             HHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHH
Q 007736          350 IIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVL  429 (591)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~  429 (591)
                      ..+.....+.+.++..  .+.+        ..........+..++..++.+++.+|..+|           +.+..+..+
T Consensus       230 ~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~  288 (392)
T PRK12382        230 VGFAVIGTFVSLYFAS--KGWA--------MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLV  288 (392)
T ss_pred             HHHhHHHHHHHHHHHh--cCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHH
Confidence            1111111111111111  0000        011112222333344555566655433322           335667777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHH
Q 007736          430 SIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLST  509 (591)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~  509 (591)
                      .+++++++...                      .+.+...+..++.+++.+...|.......+.+|++.||++.|+++..
T Consensus       289 ~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  346 (392)
T PRK12382        289 ETVGLLLLWLA----------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAF  346 (392)
T ss_pred             HHHHHHHHHHc----------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            77766655442                      13334455667888888888888778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007736          510 LSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAF  565 (591)
Q Consensus       510 ~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  565 (591)
                      ..+|..+++.+.+++.+..+              +...|.+.++..+++.++.+.+
T Consensus       347 ~~~g~~ig~~~~g~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        347 QDIAYGVSGPLAGMLATSFG--------------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999886432              3346777777777666655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.2e-24  Score=219.15  Aligned_cols=377  Identities=14%  Similarity=0.139  Sum_probs=268.7

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~  107 (591)
                      +..|..++.+.+..|+...+=+.....+|. +.+++|.|..+.|+.++.|.++..++.++...++||+ .||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            345677888888888888887777776665 5679999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      ++.++.++++++                        +++..++++|++.|+..|.+++...++.++..|+++      |+
T Consensus        87 lFi~~n~l~alA------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~  136 (394)
T COG2814          87 LFIVSNLLSALA------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RG  136 (394)
T ss_pred             HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hh
Confidence            999999999998                        699999999999999999999999999999999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCC--ChhhHHHHHHHHHHhh
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVG--SPLTQIASVFVVAWRK  265 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  265 (591)
                      ++.++.+.+..++..+|.+++.++.|.+|||..|++.+...++.++..+...|  +.+.+.+  .+..+.          
T Consensus       137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~----------  204 (394)
T COG2814         137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTL----------  204 (394)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHH----------
Confidence            99999999999999999999999999999999999998877777777666655  1111100  000000          


Q ss_pred             cccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHH
Q 007736          266 RHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI  345 (591)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (591)
                                                                                 ++..     ++.+....+...
T Consensus       205 -----------------------------------------------------------~~~l-----~~p~v~~~l~~t  220 (394)
T COG2814         205 -----------------------------------------------------------LRLL-----RRPGVLLGLLAT  220 (394)
T ss_pred             -----------------------------------------------------------HHHh-----cCchHHHHHHHH
Confidence                                                                       0000     011122233444


Q ss_pred             HHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHH
Q 007736          346 WATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGV  425 (591)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~  425 (591)
                      .+.....+..|++..++..... +.+.+      ..........++.+++..+.+++.+|            .+.+.+..
T Consensus       221 ~l~~~g~F~~ftYi~P~L~~v~-g~s~~------~vs~~Ll~~Gv~~~~Gn~~gGrl~dr------------~~~~~l~~  281 (394)
T COG2814         221 FLFMTGHFALYTYIRPFLESVA-GFSVS------AVSLVLLAFGIAGFIGNLLGGRLADR------------GPRRALIA  281 (394)
T ss_pred             HHHHcchhhhHHhHHHHHHHcc-CCCHh------HHHHHHHHHHHHHHHHHHHHhhhccc------------cchhHHHH
Confidence            4555556666666655443322 11111      11233334445555555666655543            11134555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH
Q 007736          426 GLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL  505 (591)
Q Consensus       426 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl  505 (591)
                      ...+.++.++.+.+..                     .+.+..++..++.+++........+....+.. ++.++.++++
T Consensus       282 ~~~l~a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl  339 (394)
T COG2814         282 ALLLLALALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSL  339 (394)
T ss_pred             HHHHHHHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHH
Confidence            6677777777666542                     23344444555555555555555555555544 4669999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          506 FLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFAR  567 (591)
Q Consensus       506 ~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  567 (591)
                      +....++|..+|..++|.+.+..+              +....++.+++.+++.+..+...+
T Consensus       340 ~~aa~nlgia~GA~lGG~v~~~~g--------------~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         340 NVAAFNLGIALGAALGGLVLDALG--------------YAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc--------------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999987532              334566677777777665555443

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=5.3e-24  Score=232.26  Aligned_cols=179  Identities=12%  Similarity=0.052  Sum_probs=155.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .+.+|.+.+..++.....+.+.+++|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            446788888889999899988998888875 6999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++.+++.++                        .+...++++|+++|++.+...+...+++.|.+|+++      |+++.
T Consensus        87 ~~~~~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  136 (471)
T PRK10504         87 LGSLFCALS------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAM  136 (471)
T ss_pred             HHHHHHHHh------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            888877765                        477788899999999999999999999999999888      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      ++.+...++|..++|.+++++.++.||++.|++......++.+......++
T Consensus       137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999998876655555444444343

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=5.3e-24  Score=227.52  Aligned_cols=359  Identities=12%  Similarity=0.056  Sum_probs=234.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      ++|..+...+...+++.+..+......|.. .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRM-AQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            455566666677777777776666555544 567999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      ..++.+++.+.                        .+...+++.|++.|++.+...+...+++.|++|+++      |++
T Consensus        90 ~~~~~~~~~~~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  139 (406)
T PRK11551         90 FGLFSLATAQA------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT  139 (406)
T ss_pred             HHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            88888777765                        478888999999999999999999999999999998      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhccc
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHL  268 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (591)
                      ++++++.+.++|..+++.+++.+.+..+|++.|++.+++.++..+......++.+..+++++..                
T Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------  203 (406)
T PRK11551        140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG----------------  203 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc----------------
Confidence            9999999999999999999988888899999998876554444433333333311110000000                


Q ss_pred             CCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHH
Q 007736          269 DLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWAT  348 (591)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (591)
                                                +..+  ....                  ..+   ...  +..+........+..
T Consensus       204 --------------------------~~~~--~~~~------------------~~~---~~~--~~~~~~~~~~~~~~~  232 (406)
T PRK11551        204 --------------------------KQRA--PVLR------------------ALF---GEG--RATATLLLWISYFFT  232 (406)
T ss_pred             --------------------------hhhh--hhHH------------------HHh---hhh--hhhHHHHHHHHHHHH
Confidence                                      0000  0000                  000   000  011111111111122


Q ss_pred             HHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHH
Q 007736          349 TIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLV  428 (591)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~  428 (591)
                      ....+....+.+.+...  .+.+..      ..+.......+..+++..+.+++.+|..+|           +.+.++.+
T Consensus       233 ~~~~~~~~~~~p~~~~~--~g~s~~------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~  293 (406)
T PRK11551        233 LIVLYFLLNWLPSLLVG--QGLSRS------QAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYA  293 (406)
T ss_pred             HHHHHHHHHHHHHHHHh--CCCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHH
Confidence            22222332222222211  111111      122333334445555566666666554433           33444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHH
Q 007736          429 LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLS  508 (591)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~  508 (591)
                      ..+++++.+...                      .+.+.+.+..++.+++.....+..+++..+.+|++.|++++|+.+.
T Consensus       294 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  351 (406)
T PRK11551        294 GILASLAALAAA----------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVA  351 (406)
T ss_pred             HHHHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHH
Confidence            444444443321                      1233344455666777766777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 007736          509 TLSLGFFVSSLLVSLVHKV  527 (591)
Q Consensus       509 ~~~lg~~lg~~l~~~i~~~  527 (591)
                      ...++..+|+.+.|.+.+.
T Consensus       352 ~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        352 VGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             hhhHHHHHHhhhHhhhhcc
Confidence            9999999999999988753

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.93  E-value=2.2e-24  Score=242.98  Aligned_cols=151  Identities=15%  Similarity=0.158  Sum_probs=129.3

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007736           52 AVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCN  131 (591)
Q Consensus        52 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  131 (591)
                      ...+.+++.+++|++..+.+++.+.+.++..++++++|+++||+ |||+++++++++.+++.++++++            
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa------------  252 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV------------  252 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence            33445566778999999999999999999999999999999998 99999999999999998888876            


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhh
Q 007736          132 LNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYI  211 (591)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l  211 (591)
                                  .+.+.++++|++.|+|.++..+...++++|.+|++.      |++.+++.+.+..+|.++++.++..+
T Consensus       253 ------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       253 ------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        478889999999999999999999999999999998      99999999999999999998876555


Q ss_pred             ccc-------------cccchhHHHHHHHHHHHHH
Q 007736          212 QDN-------------LGREWGYGICACAIVFGLV  233 (591)
Q Consensus       212 ~~~-------------~g~~~~f~~~~~~~~~~~~  233 (591)
                      ...             .+||+.+++.++..++.++
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll  349 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIG  349 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHHHHHHHH
Confidence            432             3688888877765554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=7.3e-24  Score=226.36  Aligned_cols=168  Identities=15%  Similarity=0.132  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT  114 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  114 (591)
                      +.++...++...+.+.+.++++.|+++++|++..+.+++.+.+.+...+..+++|+++||+ |||+++.++.++.+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            6777889999999999999999999999999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736          115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF  194 (591)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (591)
                      ++...                        .+.+.+++.|+++|++.+...+...+++.|.+|+++      |+++.++.+
T Consensus        92 ~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~  141 (400)
T PRK11646         92 TMAIA------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLM  141 (400)
T ss_pred             HHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence            88765                        467788899999999998888888999999999988      999999999


Q ss_pred             HHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          195 FFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      ...++|..+||.+++++. .+||++.|++.++..++..+.
T Consensus       142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 679999999877655544433

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=3.9e-24  Score=228.06  Aligned_cols=174  Identities=14%  Similarity=0.161  Sum_probs=152.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .+|+++.+.+..++...+++...++++.|+++++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.++..++                        ++.+.+++.+.+.+.+.+...+...++..|.+|+++      |+++
T Consensus        84 ~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  133 (395)
T PRK10054         84 ASGFIAIPLV------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKI  133 (395)
T ss_pred             HHHHHHHHHH------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHH
Confidence            8888877775                        466677777888887777777888899999999888      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      +++.+...++|..++|.+++++.+ .+|+.+|++.+++.+++.+..
T Consensus       134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999998875 799999998877666654443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=2.6e-24  Score=235.04  Aligned_cols=433  Identities=12%  Similarity=0.056  Sum_probs=244.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------CCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTM--------HLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA  103 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~  103 (591)
                      +..+...+..+...+....+...++. +++.+        +.+..+.+++.+.+.++..+++++.|+++||+ ||||++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~   89 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHH
Confidence            34444444444444443333333332 34433        88999999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhh
Q 007736          104 IFATVQAAGVTILTISTII-PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE  182 (591)
Q Consensus       104 ~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  182 (591)
                      ++.+++.++.+++++.... ....             .........++++|+++|++.|+..+...++++|++|+++   
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---  153 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIG-------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI---  153 (479)
T ss_pred             HHHHHHHHHHHHHHhhcccccccc-------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh---
Confidence            9999998888877753110 0000             0011345678899999999999999999999999999999   


Q ss_pred             hhccchhhhhhHHHHhhchhhhhhhhhhhc--------cccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhH
Q 007736          183 RNQMTNFFNWFFFFISIGSLAAVTVLVYIQ--------DNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQ  254 (591)
Q Consensus       183 ~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (591)
                         |++++++...+..+|..+++.+++.+.        +.+|||+.|++.++..++..+.. +..++.++....++..++
T Consensus       154 ---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~s~~~l~~~~~~~~  229 (479)
T PRK10077        154 ---RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQ  229 (479)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCHHH
Confidence               999999999999999999887665442        45799999998776655544333 333332211000010000


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhH
Q 007736          255 IASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVE  334 (591)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (591)
                      ..+.    .++.. +                          ..+.....+.....           .+.+       . +
T Consensus       230 ~~~~----~~~~~-~--------------------------~~~~~~~~~~~~~~-----------~~~~-------~-~  259 (479)
T PRK10077        230 AEGI----LRKIM-G--------------------------NTLATQALQEIKHS-----------LDHG-------R-K  259 (479)
T ss_pred             HHHH----HHHHc-C--------------------------ChhHHHHHHHHHHH-----------HHHh-------h-h
Confidence            0000    00000 0                          00000000000000           0000       0 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc-----ee-ee--eeccccccccccccccccccccchhhhhhhhhhhhhhhhhh
Q 007736          335 EVKMVIRMLPIWATTIIFWTVYAQMTT-----FS-VS--QATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPI  406 (591)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  406 (591)
                      ..+..+..........+....+.+...     ++ ..  ...+.+..      ..........+..++..++..++.+|.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~------~~~~~~~~~~~~~~i~~~~~g~l~dr~  333 (479)
T PRK10077        260 TGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTD------IALLQTIIVGVINLTFTVLAIMTVDKF  333 (479)
T ss_pred             hhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000000000000000000011111110     00 00  00011100      011122223333445555566666544


Q ss_pred             hhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHH-hhh
Q 007736          407 ARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFT-YIG  485 (591)
Q Consensus       407 ~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~-~~~  485 (591)
                      .||           +.+..+..+++++++.+.....                  ......+.+...++.+.+.... .|.
T Consensus       334 g~r-----------~~~i~~~~~~~v~~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (479)
T PRK10077        334 GRK-----------PLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSMLFYVAAFAMSWGPV  384 (479)
T ss_pred             cCh-----------HHHHHhHHHHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHHhccccch
Confidence            433           5577788888888777765321                  1112223333444455554443 366


Q ss_pred             hheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007736          486 QLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAF  565 (591)
Q Consensus       486 ~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  565 (591)
                      .+.++.|.+|++.|++++|+.+....++..+++.+.+.+.+     .+|+.|+...   ...|++.++++++++++.+++
T Consensus       385 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        385 CWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK-----NSWLVAHFHN---GFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             hHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-----ccchhhhccC---ccHHHHHHHHHHHHHHHHHhc
Confidence            78899999999999999999999999999999988876642     1333222211   235677777778887777777


Q ss_pred             hhhccccccccccc
Q 007736          566 ARWYVYKDKRLAEE  579 (591)
Q Consensus       566 ~~~~~~~~~~~~~~  579 (591)
                      .+++|+++.+|.++
T Consensus       457 ~~e~~~~~~~~~~~  470 (479)
T PRK10077        457 VPETKGKTLEEMEA  470 (479)
T ss_pred             cccCCCCCHHHHHH
Confidence            88888877665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=8.2e-24  Score=228.47  Aligned_cols=167  Identities=13%  Similarity=0.064  Sum_probs=143.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .++..++..++.....+.+...+|.+. +++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence            334444555555555556666666665 56999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .++++++                        .+.+.+++.|++.|++.|...+...+++.|++|+++      |++++++
T Consensus       102 ~~~~~~~------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~  151 (434)
T PRK11663        102 NILFGFS------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI  151 (434)
T ss_pred             HHHHHHH------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence            9888876                        578888889999999999888999999999999998      9999999


Q ss_pred             hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHH
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFG  231 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~  231 (591)
                      ++.+.++|..++|.+.+++.+.+||++.|++.++..++.
T Consensus       152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998877654433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=1.3e-23  Score=219.76  Aligned_cols=359  Identities=12%  Similarity=0.087  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 007736           36 MILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTI  115 (591)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l  115 (591)
                      .++...++...+.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            3556677777777777778888876 5789999999999999999999999999999998 9999999999888888877


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHH
Q 007736          116 LTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFF  195 (591)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  195 (591)
                      .......+                   +.+.+.++++|+++|++.+...+...+++.|++|+++      |++++++.+.
T Consensus        81 ~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  135 (365)
T TIGR00900        81 LPFVALLG-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQA  135 (365)
T ss_pred             HHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHH
Confidence            77652111                   0278889999999999999999999999999999998      9999999999


Q ss_pred             HHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCC
Q 007736          196 FISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPS  275 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (591)
                      +.++|..++|.+++++.+..||++.|++.++..++..+..+....+.+.+ +++++.+                      
T Consensus       136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------  192 (365)
T TIGR00900       136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALS----------------------  192 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccc----------------------
Confidence            99999999999999999989999999887765555544433322211100 0000000                      


Q ss_pred             CcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHH-HHHHHHHHHH
Q 007736          276 MFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLP-IWATTIIFWT  354 (591)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  354 (591)
                                          +....+..                   ..++     ...+.+.+..... .+.....+..
T Consensus       193 --------------------~~~~~~~~-------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  228 (365)
T TIGR00900       193 --------------------NAVLRDTR-------------------EGIK-----FVLKNPLLRTLLLLALLFNLVFAP  228 (365)
T ss_pred             --------------------hhHHHHHH-------------------hHHH-----HHHcCcHHHHHHHHHHHHHHHHHH
Confidence                                00000000                   0000     0000011111111 1111112211


Q ss_pred             HhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHH
Q 007736          355 VYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAM  434 (591)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~  434 (591)
                      ......+++.....+.+      ....+.......+..++..++.+++.    +|..       +.+.+..+..+.++++
T Consensus       229 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~-------~~~~~~~~~~~~~~~~  291 (365)
T TIGR00900       229 AIVALFPYVQSKYLGRG------STHYGWVLAAFGLGALLGALLLGLLG----RYFK-------RMALMTGAIFVIGLAI  291 (365)
T ss_pred             HHHHHhHHHHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------hhHHHHHHHHHHHHHH
Confidence            22111122211111111      11112223333344444445555444    4322       2244555666666665


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHH
Q 007736          435 VAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGF  514 (591)
Q Consensus       435 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~  514 (591)
                      ..+...                    .. +.+.+.+..++.+++.+...+...+++.+.+|++.|++++|+.+....++.
T Consensus       292 ~~~~~~--------------------~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (365)
T TIGR00900       292 LVVGLT--------------------PP-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAW  350 (365)
T ss_pred             HHHHhh--------------------ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            555442                    11 345556677888999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 007736          515 FVSSLLVSLVHK  526 (591)
Q Consensus       515 ~lg~~l~~~i~~  526 (591)
                      .+++.+.|++.+
T Consensus       351 ~~g~~~~g~l~~  362 (365)
T TIGR00900       351 PLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.92  E-value=1.1e-23  Score=234.65  Aligned_cols=336  Identities=27%  Similarity=0.475  Sum_probs=268.9

Q ss_pred             HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 007736           47 TTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLR  126 (591)
Q Consensus        47 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~  126 (591)
                      +||++...+..|+++.+|++.+.+..+...+.....+.++++|+++|+++||++++.++.++..+|.++++++.. |...
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cccc
Confidence            689999999999999999999999999999999999999999999999999999999999999999999887532 1100


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhh
Q 007736          127 PPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVT  206 (591)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~  206 (591)
                                     ........+++.++.++|.|+..|+..+...|++++++.   .+|.++++++++++|+|+.++++
T Consensus        81 ---------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~  142 (654)
T TIGR00926        81 ---------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTI  142 (654)
T ss_pred             ---------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHH
Confidence                           002344567888899999999999999999999986542   23899999999999999999999


Q ss_pred             hhhhhccc-------cccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCccc
Q 007736          207 VLVYIQDN-------LGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFN  279 (591)
Q Consensus       207 i~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (591)
                      +.+++.+.       .+|..+|.+++++++++++++....++++.+++.+++.....+++..+.++++......      
T Consensus       143 i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~------  216 (654)
T TIGR00926       143 ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH------  216 (654)
T ss_pred             HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc------
Confidence            99998744       36999999999999999888888777776666666666666666666665533211100      


Q ss_pred             ccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007736          280 IDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQM  359 (591)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (591)
                                        ....|++.+...               +   ..++++++|++++++.++....++|..+.|.
T Consensus       217 ------------------~~~~~ld~a~~~---------------~---~~~~V~evkrll~il~l~i~~~ifw~~~~Q~  260 (654)
T TIGR00926       217 ------------------WPLHWLDYAKDK---------------H---DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ  260 (654)
T ss_pred             ------------------cchhHHHHhccc---------------c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                              012333332211               0   2335678899999999999999999999999


Q ss_pred             cceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 007736          360 TTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAAL  439 (591)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~  439 (591)
                      .+.+..+...++.+++++.+|++.+..++.+.++++.|+.++.+.+..+|...+   +++..++.+|+++++++++++..
T Consensus       261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~  337 (654)
T TIGR00926       261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAAL  337 (654)
T ss_pred             hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHH
Confidence            998888777777777788889999999999999999999997777766665432   78899999999999999999998


Q ss_pred             HHHHHHH
Q 007736          440 CEIKRLR  446 (591)
Q Consensus       440 ~~~~~~~  446 (591)
                      .+.+.+.
T Consensus       338 ve~~~~~  344 (654)
T TIGR00926       338 VQLKVNP  344 (654)
T ss_pred             HHHHHhc
Confidence            8766553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=1.2e-23  Score=231.53  Aligned_cols=177  Identities=14%  Similarity=0.058  Sum_probs=134.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTG----TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFA  106 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~  106 (591)
                      ++.+....+..+++.+....+....+..-.+    +.+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~   93 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence            3444445555555555554444444433222    1345666788999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhcc
Q 007736          107 TVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQM  186 (591)
Q Consensus       107 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  186 (591)
                      ++..++.++++++...                  ....+...++++|+++|++.|+..+....+++|.+|+++      |
T Consensus        94 ~~~~v~~~~~~~~~~~------------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R  149 (502)
T TIGR00887        94 IIMIIATVASGLSPGS------------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R  149 (502)
T ss_pred             HHHHHHHHHHHHccCc------------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H
Confidence            9999998888775210                  000136789999999999999999999999999999999      9


Q ss_pred             chhhhhhHHHHhhchhhhhhhhhhhcc-----------------------ccccchhHHHHHHHHHHHH
Q 007736          187 TNFFNWFFFFISIGSLAAVTVLVYIQD-----------------------NLGREWGYGICACAIVFGL  232 (591)
Q Consensus       187 ~~~~~~~~~~~~ig~~~~p~i~~~l~~-----------------------~~g~~~~f~~~~~~~~~~~  232 (591)
                      +++.++.+....+|..+++.++..+..                       .++||+.|.+.++..++..
T Consensus       150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~  218 (502)
T TIGR00887       150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL  218 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH
Confidence            999999999999999999887765421                       2479999977766554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=4e-23  Score=217.83  Aligned_cols=360  Identities=14%  Similarity=0.075  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007736           44 ERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIP  123 (591)
Q Consensus        44 ~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~  123 (591)
                      ++.....+.+.+| .+++++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++.........+.. .....   
T Consensus         3 ~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~---   76 (368)
T TIGR00903         3 SQAIWVTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP---   76 (368)
T ss_pred             hhHHHHHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh---
Confidence            3444444444444 45678999999999999999999999999999999998 999987665544444332 22220   


Q ss_pred             CCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhh
Q 007736          124 SLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLA  203 (591)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  203 (591)
                                          .+...+++.|+++|+|.+. ..+..+.++|++|+++      |+++.++.+.+..+|..+
T Consensus        77 --------------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l  129 (368)
T TIGR00903        77 --------------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIF  129 (368)
T ss_pred             --------------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHH
Confidence                                3788899999999999986 4556666799999988      999999999999999999


Q ss_pred             hhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCC
Q 007736          204 AVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDI  283 (591)
Q Consensus       204 ~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (591)
                      ++.+++++.+++|||+.|++.++..++..+..+...++.++++++...                                
T Consensus       130 ~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~--------------------------------  177 (368)
T TIGR00903       130 ALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG--------------------------------  177 (368)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc--------------------------------
Confidence            999999999999999999886665544444444433332111000000                                


Q ss_pred             ccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhcccccee
Q 007736          284 PVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFS  363 (591)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (591)
                                  ..   +..                   .+++    +-.++++........++....++...++.++++
T Consensus       178 ------------~~---~~~-------------------~~~~----~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L  219 (368)
T TIGR00903       178 ------------FK---DAV-------------------KEFG----ALAGRKDLWIIGAILGFGVALFDNLAIWLEAAL  219 (368)
T ss_pred             ------------hH---HHH-------------------HHHH----HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        00   000                   0000    000112222333344555666666667777666


Q ss_pred             eeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007736          364 VSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIK  443 (591)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~  443 (591)
                      ...  +++..       .+...   .+..+.......+..+|..||..+       ...+....++.++.+..+...   
T Consensus       220 ~~~--g~s~~-------~~~~~---~l~~~~g~~g~~~~~d~~~r~~~r-------~~~~~~~~~~~a~~~~~~~~~---  277 (368)
T TIGR00903       220 RPA--GLEDI-------AGDAV---ALAILAGLIGVAVIPDRVARAGLR-------SIYIRAAALLIAAFFLALAFE---  277 (368)
T ss_pred             HHC--CCChH-------HHHHH---HHHHHHHHHHHHHhhHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHHc---
Confidence            321  12211       11111   111122222233444444333111       111222233333333333221   


Q ss_pred             HHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007736          444 RLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSL  523 (591)
Q Consensus       444 ~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~  523 (591)
                                         .+....+....+.+++.....+..+++..|.+|++.||+++|+.+....+++.+++.+.+.
T Consensus       278 -------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~  338 (368)
T TIGR00903       278 -------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML  338 (368)
T ss_pred             -------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence                               1122223344455555555667778899999999999999999999999999999999987


Q ss_pred             hhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHH
Q 007736          524 VHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYL  563 (591)
Q Consensus       524 i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~  563 (591)
                      +..                .....|.++++.++++.+..+
T Consensus       339 ~~~----------------~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       339 FIS----------------SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             Hhc----------------CHHHHHHHHHHHHHHHHHHHH
Confidence            762                133467777888787776653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=2.3e-23  Score=228.64  Aligned_cols=399  Identities=10%  Similarity=-0.008  Sum_probs=245.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      |..+..+++..++.....-.+..-+|.. .+++|.+..+.+|+.+.|.++..++.++.|+++||+ |||+++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            4455666666777766666666666665 568999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCC-CCCChhhhhccchh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQF-DDSDPQERNQMTNF  189 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~  189 (591)
                      ++.++++.+                        ++.+.++++|+++|+|.++..+.....+.+.+ |+++      |+++
T Consensus        83 ~~~~~~~~a------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~  132 (495)
T PRK14995         83 LASLAAAFS------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMA  132 (495)
T ss_pred             HHHHHHHHc------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHH
Confidence            999999987                        58889999999999999998888777787776 5566      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChh-hHHHH-----HHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPL-TQIAS-----VFVVAW  263 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~  263 (591)
                      ++++....++|..+||.+++++.+++|||+.|++...+.++..+......++.+++++++.+. .....     .+....
T Consensus       133 ~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~  212 (495)
T PRK14995        133 LGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSA  212 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887665555544444444322211111111 11000     001111


Q ss_pred             hhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHH-hhhccCCCCCccccccccccccCccchhHHHHHHHHH
Q 007736          264 RKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDK-AAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRM  342 (591)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (591)
                      +....  .....+                ............. .-...+..       .+.|.   .+....+.|.+...
T Consensus       213 ~~~~~--~~~~~~----------------~~~~~~~~~~~~l~~f~~~e~~-------~~~p~---~~~~lf~~~~~~~~  264 (495)
T PRK14995        213 KTALK--GFLSLW----------------VTSLTLLTGALLLGLFIRTQLA-------ASRPM---IDMRLFTHRIILSG  264 (495)
T ss_pred             Hhccc--cCCchH----------------HHHHHHHHHHHHHHHHHHHHhc-------CCCCC---cCHHHhCCcccHHH
Confidence            11000  000000                0000000000000 00000000       00111   00000111111111


Q ss_pred             HH-HHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchh
Q 007736          343 LP-IWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQ  421 (591)
Q Consensus       343 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~  421 (591)
                      .. .+.....++......+.++ +...+.+      ....+.......+...+..++.+++.+|..+|           +
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~l-q~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~  326 (495)
T PRK14995        265 VVMAMTAMITLVGFELLMAQEL-QFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------L  326 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------H
Confidence            11 1111111111111111111 1111111      11122333333445556666666666444332           4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHH
Q 007736          422 RIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTM  501 (591)
Q Consensus       422 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~  501 (591)
                      .+..|+++.+++.+.+....                   ...+.+......++.|+|.++..+.....+.+.+|++.++.
T Consensus       327 ~~~~g~~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~  387 (495)
T PRK14995        327 VATGGMALSALSFYGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA  387 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch
Confidence            46678877777776655431                   11233344556788899999988888888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Q 007736          502 STGLFLSTLSLGFFVSSLLVSLVHK  526 (591)
Q Consensus       502 ~~gl~~~~~~lg~~lg~~l~~~i~~  526 (591)
                      +++++++.+.+|+.+|+.+.+.+.+
T Consensus       388 ~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        388 AGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=4.2e-23  Score=220.01  Aligned_cols=366  Identities=12%  Similarity=0.023  Sum_probs=236.3

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007736           45 RLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPS  124 (591)
Q Consensus        45 ~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~  124 (591)
                      +..++.+.+.+| .+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||+++..+..+++++.++++++     
T Consensus        22 ~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a-----   94 (393)
T PRK09705         22 RPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY-----   94 (393)
T ss_pred             chhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC-----
Confidence            333455555555 45678999999999999999999999999999999998 99999999999999999999987     


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhh
Q 007736          125 LRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAA  204 (591)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  204 (591)
                                         +++..++++|+++|+|.+...+....++.|++| ++      |+++.+++..+.++|..++
T Consensus        95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g  148 (393)
T PRK09705         95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG  148 (393)
T ss_pred             -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence                               477888999999999999999998999999987 66      8999999999999999999


Q ss_pred             hhhhhhhcccc-ccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCC
Q 007736          205 VTVLVYIQDNL-GREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDI  283 (591)
Q Consensus       205 p~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (591)
                      +.+++++.++. +|+..+.+.++..++..+..+...++.+   +++++                                
T Consensus       149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------------  193 (393)
T PRK09705        149 AAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREV---ASSHK--------------------------------  193 (393)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccccC--------------------------------
Confidence            99999888775 8998876554443333332222211110   00000                                


Q ss_pred             ccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhcccccee
Q 007736          284 PVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFS  363 (591)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (591)
                          .    +   ..                      ....+        .+.+.........+....++....+.+.++
T Consensus       194 ----~----~---~~----------------------~~~~l--------~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l  232 (393)
T PRK09705        194 ----T----T---TT----------------------PVRVV--------FTPRAWTLGVYFGLINGGYASLIAWLPAFY  232 (393)
T ss_pred             ----C----C---cC----------------------Ccccc--------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0    0   00                      00000        011111111222222333334444444443


Q ss_pred             eeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007736          364 VSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIK  443 (591)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~  443 (591)
                      ..  .+.+..      ..+.......+..+++.++.+++.    +|..       +.+.+.++..+.+++.+.+....  
T Consensus       233 ~~--~g~s~~------~ag~~~~~~~i~~i~g~~~~g~l~----~r~~-------~~~~~~~~~~l~~~~~~~~~~~~--  291 (393)
T PRK09705        233 IE--IGASAQ------YSGSLLALMTLGQAAGALLMPAMA----RHQD-------RRKLLMLALVLQLVGFCGFIWLP--  291 (393)
T ss_pred             HH--cCCChh------hhhHHHHHHHHHHHHHHHHHHHHH----hhcc-------chHHHHHHHHHHHHHHHHHHHcc--
Confidence            22  121111      122233344444555555555544    4422       22446667767666665554321  


Q ss_pred             HHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccC-CcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007736          444 RLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLREC-PKGMKTMSTGLFLSTLSLGFFVSSLLVS  522 (591)
Q Consensus       444 ~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~gl~~~~~~lg~~lg~~l~~  522 (591)
                                        . +...+  ..++.+++.+...|.......+.. |++.+++.+|+.+....++..+++.+.+
T Consensus       292 ------------------~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G  350 (393)
T PRK09705        292 ------------------L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSG  350 (393)
T ss_pred             ------------------c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              1 11111  123456666666666655556666 4678999999999999999999999999


Q ss_pred             HhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007736          523 LVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDK  574 (591)
Q Consensus       523 ~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~  574 (591)
                      ++.+..|             +++..|.+.++.++++.+..+.+.++++.+..
T Consensus       351 ~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        351 VLRSISG-------------NYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHhC-------------CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            9986542             23456777777777777777777776665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=8.5e-23  Score=218.45  Aligned_cols=160  Identities=11%  Similarity=0.113  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 007736           46 LTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSL  125 (591)
Q Consensus        46 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~  125 (591)
                      .+...+.+.++. +.+++|.+..+.++..+.+.+++.++.++.|+++||+ ||||++.++..+.+++.+++..+      
T Consensus        27 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~------   98 (406)
T PRK15402         27 IANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA------   98 (406)
T ss_pred             hhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH------
Confidence            344445555554 4578999999999999999999999999999999998 99999999999988888887775      


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhh
Q 007736          126 RPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAV  205 (591)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p  205 (591)
                                        .+.+.+++.|++.|++.+...+...+++.|.+|+++      |.+..++......++..++|
T Consensus        99 ------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~  154 (406)
T PRK15402         99 ------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGP  154 (406)
T ss_pred             ------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHH
Confidence                              477788899999999999888888899999999988      88989998878888999999


Q ss_pred             hhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          206 TVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       206 ~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      .+++++.+..+|++.|++.++..++..+..+.
T Consensus       155 ~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        155 LVGAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            99999998899999998877665555444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=1.5e-23  Score=228.51  Aligned_cols=150  Identities=11%  Similarity=-0.035  Sum_probs=126.2

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 007736           56 VTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHG  135 (591)
Q Consensus        56 ~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  135 (591)
                      .+.+.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++.+++++.+++.++.+....              
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------  116 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--------------  116 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence            3456789999999999999999999999999999999998 9999999988888887776665311              


Q ss_pred             CcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcccc
Q 007736          136 QSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNL  215 (591)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~  215 (591)
                           ....+...+++.|+++|++.+...+...++++|++|+++      |+++++++..+.++|.++++.+..++.+..
T Consensus       117 -----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~  185 (467)
T PRK09556        117 -----SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYF  185 (467)
T ss_pred             -----cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence                 011478899999999999999999999999999999999      999999999999999999998887766543


Q ss_pred             ---ccchhHHHHHHHHHHH
Q 007736          216 ---GREWGYGICACAIVFG  231 (591)
Q Consensus       216 ---g~~~~f~~~~~~~~~~  231 (591)
                         +|+..|.+.++..++.
T Consensus       186 ~~~~~~~~f~~~g~~~~~~  204 (467)
T PRK09556        186 FDGHVIGMFIFPSIIALII  204 (467)
T ss_pred             ccCcchhHHHHHHHHHHHH
Confidence               5888887766544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=2.4e-23  Score=222.28  Aligned_cols=378  Identities=13%  Similarity=0.056  Sum_probs=242.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHH-----HHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNAS-----AANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFA  106 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~  106 (591)
                      +++..+.+..++...++....+.+|.|++ ++|++..+     .+++.+.+.+...++.++.|+++||+ |||+++..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            45666777888888888888899999986 58887654     47888899999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhcc
Q 007736          107 TVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQM  186 (591)
Q Consensus       107 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  186 (591)
                      ++.+++.+++...                        .+.+.+++.|++.|++.+ ..+...+++.|.+|+++      |
T Consensus        92 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~  140 (408)
T PRK09874         92 LGMGIVMVLMGLA------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------S  140 (408)
T ss_pred             HHHHHHHHHHHHH------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------h
Confidence            8888888777765                        478888999999998765 45777788899999888      9


Q ss_pred             chhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhc
Q 007736          187 TNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKR  266 (591)
Q Consensus       187 ~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (591)
                      +++.++.+...++|..++|.+++.+.+.++|++.|++.++..++..+..+...++.+.  +.+++.+.            
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------  206 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEML------------  206 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhh------------
Confidence            9999999999999999999999999988999999988876655554443333332110  00000000            


Q ss_pred             ccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHH-
Q 007736          267 HLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI-  345 (591)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  345 (591)
                                                        ...+.....            +            +.+........ 
T Consensus       207 ----------------------------------~~~~~~~~~------------~------------~~~~~~~~~~~~  228 (408)
T PRK09874        207 ----------------------------------HMREVVTSL------------K------------NPKLVLSLFVTT  228 (408)
T ss_pred             ----------------------------------HHHHHHHhC------------c------------CCchHHHHHHHH
Confidence                                              000000000            0            00001101110 


Q ss_pred             HHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHH
Q 007736          346 WATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGV  425 (591)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~  425 (591)
                      ..............+.+..... .....   .....+.+.....+..++..++.+++.+|..+|           +.+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~  293 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELA-GNVSN---IAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILIT  293 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-ccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHH
Confidence            0111111011111111111000 00000   000011122222333444555555555443332           44556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH
Q 007736          426 GLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL  505 (591)
Q Consensus       426 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl  505 (591)
                      +..+..++++.+...                      .+.+.+.+..++.+++.+...|...+++.+..|++.+|+.+|+
T Consensus       294 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  351 (408)
T PRK09874        294 ALIFSVLLLIPMSFV----------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSY  351 (408)
T ss_pred             HHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehH
Confidence            666665555544432                      1334445566778888888888888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007736          506 FLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAF  565 (591)
Q Consensus       506 ~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  565 (591)
                      ++....+|..+|+.+.|.+.+..+              +...|++.+++++++.+..++.
T Consensus       352 ~~~~~~~g~~~gp~~~G~l~~~~g--------------~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        352 NQSFRDIGNVTGPLMGAAISANYG--------------FRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhhcc--------------hhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875321              3456777777777776655544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.91  E-value=1.4e-22  Score=216.09  Aligned_cols=173  Identities=13%  Similarity=0.153  Sum_probs=151.0

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~  107 (591)
                      ++.|+.+..+.+..++.....|.....+|.+ .+++|+++.+.++..+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~   93 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAV   93 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHH
Confidence            4467766667676666666666666666664 568999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.+++.+++.++                        .+++.+++.|+++|++.+...+...+++.|++|+++      |+
T Consensus        94 ~~~~~~~~~~~~------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~  143 (394)
T PRK10213         94 LLTLSCLLVSFA------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VP  143 (394)
T ss_pred             HHHHHHHHHHHH------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HH
Confidence            999988888776                        588999999999999999999999999999999998      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHH
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGL  232 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~  232 (591)
                      ++.++...+.++|..++|.+++++.+.+||++.|++.++..++..
T Consensus       144 ~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988775544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=1.2e-22  Score=217.96  Aligned_cols=180  Identities=12%  Similarity=0.029  Sum_probs=152.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .|+.++...+..+++.+....+....+ .+++++|++..+.+++.+.+.+++.+++++.|+++||+ |||+++..++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            466667777777777776666655554 78899999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .++.++++++                        .+...+++.|+++|++.+...+....++.|++|+++      |+++
T Consensus        84 ~~~~~~~~~~------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~  133 (412)
T TIGR02332        84 GIASTATMFA------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA  133 (412)
T ss_pred             HHHHHHHHHh------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence            9999999886                        478889999999999999999988899999999998      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhcc------ccccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQD------NLGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      .++++.+..+|..+++.+++++.+      ..|||+.|++.++..++..++.++..++
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999998763      4699999998776655444444444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.91  E-value=8.8e-23  Score=221.15  Aligned_cols=142  Identities=19%  Similarity=0.268  Sum_probs=123.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchh
Q 007736           65 LGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGM  144 (591)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (591)
                      .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++......                     .
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~---------------------~  125 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA---------------------L  125 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc---------------------c
Confidence            3389999999999999999999999999998 99999999999999998888765211                     3


Q ss_pred             HHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhh---hhhccccccchhH
Q 007736          145 QLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVL---VYIQDNLGREWGY  221 (591)
Q Consensus       145 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~---~~l~~~~g~~~~f  221 (591)
                      +.+.++++|+++|+|.+...+...++++|++|+++      |+++.++++.+.++|..+++.++   +.+.+..+||+.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            45688999999999999999999999999999999      99999999999999999999998   7777778999999


Q ss_pred             HHHHHHHHHHHHH
Q 007736          222 GICACAIVFGLVV  234 (591)
Q Consensus       222 ~~~~~~~~~~~~~  234 (591)
                      ++.++..++..+.
T Consensus       200 ~~~~~~~~~~~~~  212 (481)
T TIGR00879       200 GLQLIPAGLLFLG  212 (481)
T ss_pred             HHHHHHHHHHHHH
Confidence            9866554444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=2.9e-22  Score=216.30  Aligned_cols=175  Identities=16%  Similarity=0.124  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CChHHHHHHHH---HHHHHHHHHHhhhHHHhhhhchhHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMH---LGNASAANTVT---NFLGTSFMLCLLGGFIADTFLGRYLTIAIF  105 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~~~~---~~~~~~~i~~~~~G~laD~~~Grk~~~~~~  105 (591)
                      +.+....+..+++.+.... ..++.+++.++++   .+..+.+.+.+   ...++..++.+++|+++||+ ||||++.++
T Consensus        22 ~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~   99 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHH
Confidence            3444444556677777666 5556667777774   45554444434   34455559999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736          106 ATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ  185 (591)
Q Consensus       106 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (591)
                      .++++++.++++++.+....                ...+...+.+.|+++|+|.|+..+...++++|++|+++      
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------  157 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETI----------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------  157 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhH----------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------
Confidence            99999999999886211000                00234568899999999999999999999999999998      


Q ss_pred             cchhhhhhHHHHhhchhhhhhhhhhhc--------cccccchhHHHHHHHHHH
Q 007736          186 MTNFFNWFFFFISIGSLAAVTVLVYIQ--------DNLGREWGYGICACAIVF  230 (591)
Q Consensus       186 r~~~~~~~~~~~~ig~~~~p~i~~~l~--------~~~g~~~~f~~~~~~~~~  230 (591)
                      |+++.++.+.+.+.|..+++.+...+.        +.+|||++|++.++..++
T Consensus       158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence            999999988888888888876655443        257999999987664443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=8.6e-23  Score=215.21  Aligned_cols=155  Identities=17%  Similarity=0.181  Sum_probs=137.3

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 007736           53 VNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNL  132 (591)
Q Consensus        53 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  132 (591)
                      ....+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++..+++++             
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------   79 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------   79 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence            3344557889999999999999999999999999999999998 99999999999999999888876             


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhc
Q 007736          133 NHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQ  212 (591)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~  212 (591)
                                 .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++.+.
T Consensus        80 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893        80 -----------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             -----------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                       478889999999999999999999999999999988      999999999999999999999999999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHhc
Q 007736          213 DNLGREWGYGICACAIVFGLVVFLSG  238 (591)
Q Consensus       213 ~~~g~~~~f~~~~~~~~~~~~~~~~~  238 (591)
                      +..+|++.|++.++..++..+..+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       143 IHFSWQWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHhhhe
Confidence            98999999988776655544444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=1e-22  Score=221.14  Aligned_cols=156  Identities=9%  Similarity=0.018  Sum_probs=124.6

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 007736           54 NLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLN  133 (591)
Q Consensus        54 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  133 (591)
                      ...+|+.++ |++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.+++++....           
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~-----------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA-----------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence            344567777 99999999999999999999999999999998 99999999999999988888765210           


Q ss_pred             CCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhh-hhhhhhhhc
Q 007736          134 HGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLA-AVTVLVYIQ  212 (591)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~-~p~i~~~l~  212 (591)
                               ..+...+++.|++.|++.+...+...+.+.|++|+++      |++++++++.+.++|+.+ +|+++..+.
T Consensus       117 ---------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        117 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             ---------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                     0256778888999999999888888888999999998      999999999999988754 555433333


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHh
Q 007736          213 DNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       213 ~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      ...||++.|++.++..++..+..++
T Consensus       182 ~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHH
Confidence            3458999999877655544333333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=7e-23  Score=220.28  Aligned_cols=166  Identities=13%  Similarity=0.134  Sum_probs=145.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      +++.+....+..+.+.+..+.....+ .++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIM-YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            45566666677777777766654444 456788999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.++++++                        .+...++++|+++|++.+...+....++.|.+|+++      |+++
T Consensus        94 ~~~~~~~~~~------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~  143 (426)
T PRK12307         94 SVGTGLSGLA------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA  143 (426)
T ss_pred             HHHHHHHHHH------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence            9999888886                        578899999999999999999999999999999998      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACA  227 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~  227 (591)
                      .++...+..+|..+++.+.+.+.+.+||++.|++..+.
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999999998989999999876543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=2.4e-22  Score=220.40  Aligned_cols=175  Identities=15%  Similarity=0.104  Sum_probs=129.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHH-HHH-----HHHHHHHHHHHHHhhhHHHhhhhchhHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNAS-AAN-----TVTNFLGTSFMLCLLGGFIADTFLGRYLTIAI  104 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~-~~~-----~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~  104 (591)
                      ++.+....++.+++.+.+..+. +..+++.+.++.+..+ ..+     +.+...++..++.++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYG-FVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            4455566677777777666544 4455777777543321 122     24667788999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 007736          105 FATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERN  184 (591)
Q Consensus       105 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  184 (591)
                      ++++++++.++++++.+...++                -.....+.+.|+++|+|.|+..+...++++|++|+++     
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g----------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-----  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG----------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-----  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH----------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-----
Confidence            9999999999999872110000                0011247889999999999999999999999999999     


Q ss_pred             ccchhhhhhHHHHhhchhhhhhhhhhhc--------cccccchhHHHHHHHHH
Q 007736          185 QMTNFFNWFFFFISIGSLAAVTVLVYIQ--------DNLGREWGYGICACAIV  229 (591)
Q Consensus       185 ~r~~~~~~~~~~~~ig~~~~p~i~~~l~--------~~~g~~~~f~~~~~~~~  229 (591)
                       |+++.++...+..+|..+++.+...+.        ..+|||+.|++.++..+
T Consensus       152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence             999999988888888888776554432        25799999998765433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=3.9e-22  Score=217.81  Aligned_cols=174  Identities=10%  Similarity=0.035  Sum_probs=133.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      +++.++......++.....+...+.++ ++.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++..+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            344555555555555555555554444 55778999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.++++++                        .+...+++.|+++|++.+... ....+++|++|+++      |+++
T Consensus       112 ~~~~~~~~~~------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a  160 (476)
T PLN00028        112 APAVFCMSLV------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA  160 (476)
T ss_pred             HHHHHHHHHh------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence            8888888776                        467778889999999888654 45567899999998      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhcc---------ccccchhHHHHHHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQD---------NLGREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~---------~~g~~~~f~~~~~~~~~~~~~~~  236 (591)
                      .++.+...++|+.+++.+.+.+..         ..|||+.|++.+++.++..+..+
T Consensus       161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            999887778888877666654421         25899999988766554444333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=6.6e-23  Score=209.30  Aligned_cols=181  Identities=12%  Similarity=-0.027  Sum_probs=156.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNL---VTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAI  104 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~  104 (591)
                      +..+|--+.+++..++-..++|..--++   .+++.++.++|.+|.|.+.+.+.+++.++..+.|.++||. +.|+.+.+
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~   99 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehH
Confidence            3344444667777777777777655443   4678888999999999999999999999999999999997 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 007736          105 FATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERN  184 (591)
Q Consensus       105 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  184 (591)
                      ++++.++..++++++                        .+...+.+...+.|..+|.-.|++...++.++++++     
T Consensus       100 gLilsai~nil~Gfs------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e-----  150 (448)
T COG2271         100 GLILSAIVNILFGFS------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE-----  150 (448)
T ss_pred             HHHHHHHHHHHHhhh------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc-----
Confidence            999999999999997                        588888889999999999999999999999999999     


Q ss_pred             ccchhhhhhHHHHhhchhhhhhhh--hhhccccccchhHHHHHHHHHHHHHHHHhcC
Q 007736          185 QMTNFFNWFFFFISIGSLAAVTVL--VYIQDNLGREWGYGICACAIVFGLVVFLSGT  239 (591)
Q Consensus       185 ~r~~~~~~~~~~~~ig~~~~p~i~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  239 (591)
                       ||+..++.|.+-|+|+++.|++.  +++..+++|+..|++++++.++..++.+...
T Consensus       151 -RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         151 -RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             -cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence             99999999999999999999999  9999999999999999876655544444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=3.6e-22  Score=210.51  Aligned_cols=172  Identities=11%  Similarity=-0.011  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHH-HHHHHHHHHHHH
Q 007736           38 LGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAI-FATVQAAGVTIL  116 (591)
Q Consensus        38 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~-~~~~~~i~~~l~  116 (591)
                      ++..++...+.....+.++.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.+++ +..+..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            4567788888888999999999999999999999999999999999999999999998 99887665 445555566666


Q ss_pred             HHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh--hhhhH
Q 007736          117 TISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF--FNWFF  194 (591)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~  194 (591)
                      +.+                        ++.+.+++.|++++.+.+...|...++..|..|++.      |.+.  .++..
T Consensus        82 ~~~------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~  131 (375)
T TIGR00899        82 AWN------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMR  131 (375)
T ss_pred             Hhc------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHH
Confidence            664                        467778888888887777777877888888877666      5543  57777


Q ss_pred             HHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          195 FFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      ...++|..++|.+++++.+.+||++.|++.++..++..+..++..+
T Consensus       132 ~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       132 AQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             HHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7889999999999999999899999999887765555444444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=4.2e-23  Score=214.99  Aligned_cols=350  Identities=17%  Similarity=0.226  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q 007736           38 LGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILT  117 (591)
Q Consensus        38 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~  117 (591)
                      ++..++.........+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4566677777777777788788899999999999999999999999999999999998 999999999999999966666


Q ss_pred             HHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHH
Q 007736          118 ISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFI  197 (591)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  197 (591)
                      ++                        .+.+.++++|++.|++.+...+...+++.|++|+++      |++.+++.+.+.
T Consensus        81 ~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~  130 (352)
T PF07690_consen   81 FA------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGF  130 (352)
T ss_dssp             HH------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHH
T ss_pred             hh------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchh
Confidence            54                        255588999999999999999999999999999998      999999999999


Q ss_pred             hhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCc
Q 007736          198 SIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMF  277 (591)
Q Consensus       198 ~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (591)
                      ++|..++|.+++++.+..+|++.|++.++..++..++.....++.+.+++++++.+                        
T Consensus       131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~------------------------  186 (352)
T PF07690_consen  131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKE------------------------  186 (352)
T ss_dssp             HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTT------------------------
T ss_pred             hhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccc------------------------
Confidence            99999999999999999999999999888777665543333332211111111000                        


Q ss_pred             ccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHH-HHHHHHHHHHHHHHHh
Q 007736          278 FNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVI-RMLPIWATTIIFWTVY  356 (591)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  356 (591)
                                        ..+      .               .+.++.. .-+...+.+.++ .....+.....+....
T Consensus       187 ------------------~~~------~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (352)
T PF07690_consen  187 ------------------SES------K---------------KPKPLKP-GFKSLFKNPVLWILLIAFFLFFFVFSGFS  226 (352)
T ss_dssp             ------------------TT-----------------------HHHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------ccc------c---------------ccccccc-ccccccccchhhhhhhhhhHHHHHHHHhh
Confidence                              000      0               0011100 001111122111 1111112222222222


Q ss_pred             ccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHH
Q 007736          357 AQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVA  436 (591)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~  436 (591)
                      .+.+.+ .....+.+ .    ....+.......+...+..++.+++.+|..+|           +.+.+......++.+.
T Consensus       227 ~~~~~~-l~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  227 FFLPLY-LQEVLGFS-G----PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----------RRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHH-CCHHHHCC-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHH
T ss_pred             cccchh-hhhccCCC-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHH
Confidence            222222 11111111 0    00112222333333444455556555433222           3344444444444444


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHH
Q 007736          437 AALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFV  516 (591)
Q Consensus       437 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~l  516 (591)
                      +....                   ...+..+.+...++.|++.+...+...+++.+.+|++.+|++.|+.+...+++..+
T Consensus       290 ~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i  350 (352)
T PF07690_consen  290 LLLLP-------------------FSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII  350 (352)
T ss_dssp             HCCSH-------------------HHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            43321                   11234455567788899999999999999999999999999999999999999998


Q ss_pred             HH
Q 007736          517 SS  518 (591)
Q Consensus       517 g~  518 (591)
                      ||
T Consensus       351 gP  352 (352)
T PF07690_consen  351 GP  352 (352)
T ss_dssp             HH
T ss_pred             CC
Confidence            86

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=6.8e-23  Score=215.15  Aligned_cols=339  Identities=12%  Similarity=0.021  Sum_probs=216.2

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007736           48 TLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRP  127 (591)
Q Consensus        48 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~  127 (591)
                      .|.. ..+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++++++        
T Consensus        19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~--------   88 (377)
T TIGR00890        19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA--------   88 (377)
T ss_pred             Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence            4443 4456677789999999999999999999999999999999998 99999999999999999988887        


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhh
Q 007736          128 PKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTV  207 (591)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i  207 (591)
                                      .+.+.++++|++.|++.+...+.....+.+++| ++      |+++.++...+.++|..+++.+
T Consensus        89 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~  145 (377)
T TIGR00890        89 ----------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPL  145 (377)
T ss_pred             ----------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHH
Confidence                            588899999999999999888788888888886 45      8999999999999998887777


Q ss_pred             hhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCcccc
Q 007736          208 LVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEG  287 (591)
Q Consensus       208 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (591)
                      .+.+.+..||++.|++.++..++..+..+...++.++++.+++.                                    
T Consensus       146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------  189 (377)
T TIGR00890       146 ITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI------------------------------------  189 (377)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc------------------------------------
Confidence            77777778999999988766555444433332221110000000                                    


Q ss_pred             ccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeee
Q 007736          288 KKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQA  367 (591)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (591)
                           +.+ .+...   ....                        .++.+........+............... +.. .
T Consensus       190 -----~~~-~~~~~---~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~  234 (377)
T TIGR00890       190 -----EVS-VKDYT---VWEM------------------------LRTPQFWVLYLSFFLNAVSGLLLIGLYKP-YGQ-S  234 (377)
T ss_pred             -----ccc-hhhhh---HHHH------------------------HcCccHHHHHHHHHHHhHHHHHHHHHHHH-HHH-H
Confidence                 000 00000   0000                        00001111111111111111111111111 111 0


Q ss_pred             ccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007736          368 TTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRA  447 (591)
Q Consensus       368 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~  447 (591)
                      .+.+      ............+..++..++.+++.+|..||           +.+.++..+.+++.+.+....      
T Consensus       235 ~~~~------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~------  291 (377)
T TIGR00890       235 LGLS------DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----------KTMSIVFGISAVGMAAMLFIP------  291 (377)
T ss_pred             cCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHcc------
Confidence            1111      00112333444455556666777777655444           335666677777666555431      


Q ss_pred             hhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007736          448 ARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKV  527 (591)
Q Consensus       448 ~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~  527 (591)
                                    ..+...++...++.+++.+...+....++.|..|++.|++..|+.+....+|..+++.+.+.+.+.
T Consensus       292 --------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       292 --------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             --------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                          112222223345556665555566667788999999999999999999999999999999988754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=2.7e-22  Score=213.29  Aligned_cols=172  Identities=17%  Similarity=0.252  Sum_probs=151.1

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~  107 (591)
                      +.+|+.+....+..+++.+..+.+....+. +++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            456777788888888888888877766664 5678999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.+++.++++++                        .++..+++.|++.|++.+...+...+++.|.+|+++      |+
T Consensus        86 ~~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~  135 (405)
T TIGR00891        86 LFSAGTLACGFA------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RN  135 (405)
T ss_pred             HHHHHHHHHHHh------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hh
Confidence            999988888776                        478888999999999999999999999999999998      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccc--cchhHHHHHHHHHHH
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLG--REWGYGICACAIVFG  231 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g--~~~~f~~~~~~~~~~  231 (591)
                      ++.++.+.+.++|..+++.+++.+.+..+  |++.|++.++..++.
T Consensus       136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887766  999998766544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.90  E-value=7.8e-23  Score=222.10  Aligned_cols=150  Identities=12%  Similarity=0.055  Sum_probs=126.6

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 007736           57 TYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQ  136 (591)
Q Consensus        57 ~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~  136 (591)
                      ..+.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.++++++                 
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-----------------  104 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS-----------------  104 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh-----------------
Confidence            345678999999999999999999999999999999998 99999999999999988888776                 


Q ss_pred             cccccchhHHHHHHH-HHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcccc
Q 007736          137 SCIQASGMQLVVLYI-ALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNL  215 (591)
Q Consensus       137 ~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~  215 (591)
                             .+.+.+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++.+.+.+
T Consensus       105 -------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892       105 -------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             -------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence                   35666554 5688899998776677788888885 56      999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHhc
Q 007736          216 GREWGYGICACAIVFGLVVFLSG  238 (591)
Q Consensus       216 g~~~~f~~~~~~~~~~~~~~~~~  238 (591)
                      |||++|++.+++.+++.+..++.
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999887665554444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.90  E-value=1.8e-22  Score=220.66  Aligned_cols=398  Identities=13%  Similarity=0.090  Sum_probs=243.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      +..+.+..++...........+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPT-IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            344555566666665555555554 4578999999999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      ++++.+                        ++...+.++|+++|++.+...+...+++.|.+|+++      |+++.+++
T Consensus        82 ~~~~~~------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~  131 (485)
T TIGR00711        82 LLCGVA------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIW  131 (485)
T ss_pred             HHHhCc------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence            988876                        478889999999999999999999999999999988      99999999


Q ss_pred             HHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCC-ChhhHHHHHH-HHHHhhcccCCC
Q 007736          194 FFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVG-SPLTQIASVF-VVAWRKRHLDLP  271 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~  271 (591)
                      +....+|..++|.+++++.+++||++.|++.....++..+......++.++++.++ +......... .........+..
T Consensus       132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~  211 (485)
T TIGR00711       132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGP  211 (485)
T ss_pred             HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999877655555444444333322111111 1111100000 000000000000


Q ss_pred             CCCCCcccccCCccccccccccCCCCcchhh-hHHh----h-hccCCCCCccccccccccccCccchhHHHHHHHHHHHH
Q 007736          272 SDPSMFFNIDDIPVEGKKTKQRLPHTKQFRF-LDKA----A-IFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI  345 (591)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (591)
                      +.                  ...+....... ....    . ...+..       .+.|..  ..+..++++........
T Consensus       212 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~  264 (485)
T TIGR00711       212 ER------------------GWFDSNEILILSITGLVAIIAFVVWELT-------DDNPLV--DLRLFKYRNFTIGCVYM  264 (485)
T ss_pred             CC------------------CCCCchHHHHHHHHHHHHHHHHHHHHHc-------CCCCcc--CHHHHcCCChHHHHHHH
Confidence            00                  00000000000 0000    0 000000       001100  00000111111111112


Q ss_pred             HHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHH
Q 007736          346 WATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGV  425 (591)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~  425 (591)
                      +.....++......+.++.. ..+.+      ....+.......+..+++.++.+++.+|..+|           +.+.+
T Consensus       265 ~~~~~~~~~~~~~~p~~~~~-~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~  326 (485)
T TIGR00711       265 SLLGLGLYGSFYLLPLYLQQ-VLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTI  326 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHH
Confidence            22222222222222222211 11111      11123333344455556666666666443332           45677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH
Q 007736          426 GLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL  505 (591)
Q Consensus       426 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl  505 (591)
                      |..+.+++..++.....                  ...+.+.++...++.|++.++..+.......+..|++.+++++|+
T Consensus       327 g~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~  388 (485)
T TIGR00711       327 GLILYAVGFYWRAFTFT------------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSL  388 (485)
T ss_pred             HHHHHHHHHHHHhccCC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHH
Confidence            77777777776652100                  123444455667888999988887777777888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 007736          506 FLSTLSLGFFVSSLLVSLVHK  526 (591)
Q Consensus       506 ~~~~~~lg~~lg~~l~~~i~~  526 (591)
                      .++.+.+|+.+|+.+.+.+.+
T Consensus       389 ~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       389 SNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=1.4e-21  Score=208.37  Aligned_cols=172  Identities=12%  Similarity=0.092  Sum_probs=144.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      +++|-++...+..++...........+|. +.+++|+|..+.+++.+.+.+++.++.++.|+++||+ |||+++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            34566677767777776666666665655 5678999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++.++++++                        .+...+++.|+++|++.+...+...+++.|.+|+++      |++
T Consensus        82 ~~i~~~l~~~~------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~  131 (394)
T PRK03699         82 MILAVAGLMFS------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS  131 (394)
T ss_pred             HHHHHHHHHHc------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence            99998888875                        477888999999999999888888999999999888      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhcc-ccccchhHHHHHHHHHHHH
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQD-NLGREWGYGICACAIVFGL  232 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~-~~g~~~~f~~~~~~~~~~~  232 (591)
                      ..+..+...++|+.++|.+.+.+.. ..|||+.|.+.++..++..
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~  176 (394)
T PRK03699        132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIF  176 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            9998888888999999998887754 5799999987766544443

>PRK09952 shikimate transporter; Provisional

Probab=99.90  E-value=1.3e-21  Score=211.53  Aligned_cols=175  Identities=9%  Similarity=0.065  Sum_probs=132.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCChHHHHHHH-----HHHHHHHHHHHhhhHHHhhhhchhHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTM--HLGNASAANTV-----TNFLGTSFMLCLLGGFIADTFLGRYLTI  102 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~~~~~~~~~~-----~~~~~~~~i~~~~~G~laD~~~Grk~~~  102 (591)
                      +++.+...++..+++.+....+....+.++.+++  +.++. .+++.     +...++..++.++.|+++||+ |||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence            3556667777778887777766666666666555  56665 34443     234456678889999999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhh
Q 007736          103 AIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE  182 (591)
Q Consensus       103 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  182 (591)
                      .++.++++++.++++++.+...+                .......+++.|+++|++.|+..+....++.|++|+++   
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---  158 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTI----------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---  158 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHH----------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---
Confidence            99999999999999987221000                00012357889999999999999999999999999998   


Q ss_pred             hhccchhhhhhHHHHhhchhhhhhhhhhhc--------cccccchhHHHHHHHH
Q 007736          183 RNQMTNFFNWFFFFISIGSLAAVTVLVYIQ--------DNLGREWGYGICACAI  228 (591)
Q Consensus       183 ~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~--------~~~g~~~~f~~~~~~~  228 (591)
                         |++..+..+.+..+|..++..+...+.        +.+|||++|++.++..
T Consensus       159 ---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        159 ---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence               999999988888888888877666554        3579999998876643

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=9.9e-22  Score=203.90  Aligned_cols=345  Identities=19%  Similarity=0.261  Sum_probs=256.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT  114 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  114 (591)
                      +.+....++.....+...+.++.|.+ ++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            34566777888888888888888875 5799999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736          115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF  194 (591)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (591)
                      ++...                        .+...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+
T Consensus        80 ~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  129 (352)
T cd06174          80 LLAFA------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFS  129 (352)
T ss_pred             HHHHh------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHH
Confidence            88876                        478889999999999999999999999999999998      999999999


Q ss_pred             HHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCC
Q 007736          195 FFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDP  274 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (591)
                      ...++|..++|.+++.+.+..+|++.+++..+..++..+......                                   
T Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  174 (352)
T cd06174         130 AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-----------------------------------  174 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence            999999999999999999988999999888766555544432211                                   


Q ss_pred             CCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHH-HHHHHHHHHHH
Q 007736          275 SMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRM-LPIWATTIIFW  353 (591)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  353 (591)
                                                                                    |.+... ...+.......
T Consensus       175 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  192 (352)
T cd06174         175 --------------------------------------------------------------RLLLLLALAFFLLSFGYY  192 (352)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHHhHHH
Confidence                                                                          000000 11111111111


Q ss_pred             HHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchh-HHHHHHHHHHH
Q 007736          354 TVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQ-RIGVGLVLSIF  432 (591)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~-~i~~g~~~~~~  432 (591)
                      ......+.+... ..+.+      ....+.......+...+..++.+++.+|..+|           + .+.++..+..+
T Consensus       193 ~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i  254 (352)
T cd06174         193 GLLTYLPLYLQE-VLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHH
Confidence            111111111111 00111      11123344455556666667777766554443           3 57778888888


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHH
Q 007736          433 AMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSL  512 (591)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~l  512 (591)
                      +.+.+....                      +.+.+.+..++.+++.+...+....++.|..|++.|++.+|+.+....+
T Consensus       255 ~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (352)
T cd06174         255 GLLLLALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL  312 (352)
T ss_pred             HHHHHHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            877776531                      3555667788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHH
Q 007736          513 GFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIY  562 (591)
Q Consensus       513 g~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~  562 (591)
                      +..+++.+.+.+.+..    +          +...+++.+++++++.++.
T Consensus       313 ~~~i~~~i~g~l~~~~----~----------~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         313 GGALGPLLAGLLLDTG----G----------YGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHhccc----C----------cchHHHHHHHHHHHHHHHh
Confidence            9999999999987532    1          2345667777777766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=8.1e-22  Score=208.73  Aligned_cols=179  Identities=13%  Similarity=0.104  Sum_probs=145.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .|+.+...++..++.......... ..+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            344444444555555555544444 44455678999999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.+++.+.                        .+.+.+++.+++.|++.+...+...+++.|.+|+++      |+++
T Consensus        93 ~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~  142 (398)
T TIGR00895        93 SVFTLLCALA------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA  142 (398)
T ss_pred             HHHHHHHHHc------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence            8888887765                        467788899999999999999999999999999988      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +++.+.+.++|..++|.+++++.+..||+..|++.++..++..+..+...+
T Consensus       143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (398)
T TIGR00895       143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLP  193 (398)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999998875444444333333333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=1.1e-21  Score=207.49  Aligned_cols=176  Identities=13%  Similarity=0.062  Sum_probs=147.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      ++.++.+....+....+.....+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            444444555555555555555555554 5678999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++.+++..+                        ++...+++.|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        82 ~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  131 (385)
T TIGR00710        82 LSSLGLALS------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIY  131 (385)
T ss_pred             HHHHHHHHH------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHH
Confidence            988888776                        477888999999999999999999999999999988      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSG  238 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  238 (591)
                      ++.+....+|..++|.+++++.+..+|++.|++.++..++..+..+..
T Consensus       132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998999999988776655554444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=9.1e-22  Score=214.39  Aligned_cols=147  Identities=6%  Similarity=0.069  Sum_probs=128.7

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccc
Q 007736           62 TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQA  141 (591)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (591)
                      +++++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++..+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999988888877654421                    


Q ss_pred             chhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcccc-ccchh
Q 007736          142 SGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNL-GREWG  220 (591)
Q Consensus       142 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~-g~~~~  220 (591)
                        .+...+++.|+++|++.+...+....+++|++|+++      |+++.++.+.+.++|..++|.+++++.+.. ||++.
T Consensus       129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~  200 (465)
T TIGR00894       129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI  200 (465)
T ss_pred             --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence              246678899999999999999999999999999999      999999999999999999999999999884 99999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 007736          221 YGICACAIVFGLVVFLS  237 (591)
Q Consensus       221 f~~~~~~~~~~~~~~~~  237 (591)
                      |++.++..++..+.++.
T Consensus       201 f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       201 FYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            99887765554444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.90  E-value=1.5e-21  Score=207.16  Aligned_cols=156  Identities=12%  Similarity=0.128  Sum_probs=139.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .+.++.++...++...+...+.+.+|.|+. ++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            456888889999999998889999999986 6899999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++..+++++                        ++.+.++++|+++|++.+...+...+.+.|..++++      |++.+
T Consensus        83 ~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~  132 (381)
T PRK03633         83 AGCAGLGLM------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLL  132 (381)
T ss_pred             HHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            998888776                        578889999999999999888887788888888887      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                      ++++.+.++|..+||.+++.+.+...+.
T Consensus       133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        133 AAYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccch
Confidence            9999999999999999999987754333

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=4.2e-21  Score=205.25  Aligned_cols=171  Identities=13%  Similarity=0.068  Sum_probs=142.6

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~  107 (591)
                      ...||++....+..++...+.+....+++.++ +++|++..+.+++.+.+.++..++.++.|+++||+ ||||++..+..
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            34567888888999998888888888899988 56899999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.+++.+++......                    ..+...+++.|++.|+|.+...+...+.+.+.+|+++      |+
T Consensus        87 ~~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g  140 (402)
T TIGR00897        87 LWCVGHAAFIVFGLG--------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LS  140 (402)
T ss_pred             HHHHHHHHHHHHhcc--------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HH
Confidence            888887655321100                    0256777889999999988877777788889999988      99


Q ss_pred             hhhhhhHHHHhhch-hhhhhhhhhhccccccchhHHHHHH
Q 007736          188 NFFNWFFFFISIGS-LAAVTVLVYIQDNLGREWGYGICAC  226 (591)
Q Consensus       188 ~~~~~~~~~~~ig~-~~~p~i~~~l~~~~g~~~~f~~~~~  226 (591)
                      ++.++.+.+.++|. .++|.+++++.+.+||+..++....
T Consensus       141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            99999999999996 5899999999888897666655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.90  E-value=2.8e-21  Score=205.98  Aligned_cols=178  Identities=12%  Similarity=0.027  Sum_probs=130.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH-HHHHHHhhhHHHhhhhchhHHHHH-HHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLG-TSFMLCLLGGFIADTFLGRYLTIA-IFATV  108 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grk~~~~-~~~~~  108 (591)
                      ....+..++..++.+.+.....+.++.|+++++|++.++.+++.+...+ +..++.+++|+ +||+ ||||.++ .+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~   91 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL   91 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence            3455777888999999999999999999999999999999999876655 55555555666 9998 9988754 44555


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhcc--
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQM--  186 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r--  186 (591)
                      ..++..+.+++                        .+.+.+++.+.+.+...+...+....+..|..++++      |  
T Consensus        92 ~~~~~~~~~~~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  141 (393)
T PRK15011         92 GVLACTLFAWN------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REA  141 (393)
T ss_pred             HHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chH
Confidence            55666666654                        456665555444443344556777777778766655      4  


Q ss_pred             chhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          187 TNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       187 ~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +...++.+.+.++|..++|.+++++.+++|||..|++.++..++..+..+...+
T Consensus       142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        142 VMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence            344577888899999999999999999999999998887665555444444344

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.2e-22  Score=214.05  Aligned_cols=400  Identities=12%  Similarity=0.069  Sum_probs=245.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHH
Q 007736           71 ANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLY  150 (591)
Q Consensus        71 ~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (591)
                      +.+++.+.+++++++.+.|+++||+ |||..+.+..++..++.+++.++...                     ++..++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~---------------------~~~e~li  120 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA---------------------PSFEMLI  120 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHH
Confidence            4457778999999999999999998 99999999999988888888877543                     4888999


Q ss_pred             HHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhh-hhc-cccccchhHHHHHHHH
Q 007736          151 IALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLV-YIQ-DNLGREWGYGICACAI  228 (591)
Q Consensus       151 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~-~l~-~~~g~~~~f~~~~~~~  228 (591)
                      ++|++.|+..|......+.++.|..|++.      ||..-.+..++..+|..++..++. .+. ....|.+.+.+..+..
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~  194 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA  194 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999      999999999999999999955543 333 3345888887777665


Q ss_pred             HHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCccc-ccCCccccccccccCCCCcchhhhHHhh
Q 007736          229 VFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFN-IDDIPVEGKKTKQRLPHTKQFRFLDKAA  307 (591)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (591)
                      ++.++.+.+                                .||+|++++. ++|.++| +++...+...++....+...
T Consensus       195 ~~~l~~l~~--------------------------------~PESPk~Ll~~k~~~~~A-~~sl~~y~G~~~~~~~~e~~  241 (485)
T KOG0569|consen  195 LLQLALLPF--------------------------------LPESPKYLLIKKGDEEEA-RKALKFYRGKEDVEAEIEEM  241 (485)
T ss_pred             HHHHHHHhc--------------------------------CCCCcchHHHHcCCHHHH-HHHHHHHhCCCcchhHHHHH
Confidence            555444333                                2334444443 3333333 33333333222111111110


Q ss_pred             hccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeee--ccccccccccccc-cccc
Q 007736          308 IFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQA--TTMNRHIGSFEIP-GASL  384 (591)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~  384 (591)
                      .....+.+.+.+.+...+++..++.  .++.+...+.+        ....|..+......  ...-.+. |+..+ +...
T Consensus       242 ~~e~~~~~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v--------~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a~~a  310 (485)
T KOG0569|consen  242 LREIEEEELEKKKQISLRQLLKNPT--LRRPLLIGIVV--------SFAQQFSGINAIFFYSTSIFKTA-GFTPEEAQYA  310 (485)
T ss_pred             HHHHHHhccccccCCcHHHHhcCcc--hhHHHHHHHHH--------HHHHHhcCcceeHHHHHHHHHHc-CCCHHHHHHH
Confidence            0000000000000111111111111  11111111111        11111111111100  0000000 11111 1122


Q ss_pred             cccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 007736          385 TFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLS  464 (591)
Q Consensus       385 ~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  464 (591)
                      +.......++...+..++++|.+||           +.++.+..++.+..+++..........             .+.-
T Consensus       311 n~~~g~v~~~~t~~~~~lid~~gRR-----------pLll~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~  366 (485)
T KOG0569|consen  311 NLGIGIVNLLSTLVSPFLIDRLGRR-----------PLLLISLSLMAVALLLMSIALFLSNSF-------------GSWL  366 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhHH
Confidence            2222333344444555556555555           567888888888877776653221100             0111


Q ss_pred             hhHHHHHHHHHHHHHHHH-hhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcc
Q 007736          465 VFWLVPQFFLVGAGEAFT-YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGR  543 (591)
Q Consensus       465 ~~~li~~~~l~g~g~~~~-~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~  543 (591)
                      .+..+...+++.+++.+. .|..+-+++|.+|++.|..+++.....+++.+++-....+.+.+..|   +          
T Consensus       367 ~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~----------  433 (485)
T KOG0569|consen  367 SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P----------  433 (485)
T ss_pred             HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c----------
Confidence            223355556666666655 47788899999999999999999999999999999999999986543   1          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 007736          544 LYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEEGI  581 (591)
Q Consensus       544 ~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  581 (591)
                        .+|..+.+.+.+..+..++..||+|+|+..++.++.
T Consensus       434 --~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~  469 (485)
T KOG0569|consen  434 --YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL  469 (485)
T ss_pred             --hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence              468899999999999999999999999887665443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.89  E-value=1.3e-21  Score=207.81  Aligned_cols=175  Identities=10%  Similarity=0.099  Sum_probs=152.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      ++.++.+.+..++.....+...+.+|.+ ++++|.+.++.+++.+.+.+++.+++++.|+++||+ |||+++.++..+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            3467778888888888888878877765 568999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++.++++++                        ++.+.+++.|++.|++.+...+....++.|++|+++      |++++
T Consensus        80 ~~~~l~~~~------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~  129 (382)
T PRK10091         80 IGNAMFTLS------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAV  129 (382)
T ss_pred             HHHHHHHHh------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHH
Confidence            999988886                        588999999999999999888888888999999888      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      +++..+..+|..++|.+++++.+..|||+.|++.++..++..+..+.
T Consensus       130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999899999999887655544443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=1.4e-21  Score=214.52  Aligned_cols=167  Identities=18%  Similarity=0.212  Sum_probs=145.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      .+|+.+..+.+..++..+........++ ++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            3556666777777777776666655554 56678999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++.+++++.                        .+.+.+++.|++.|++.++..+...+++.|.+|+++      |++
T Consensus        95 ~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  144 (496)
T PRK03893         95 FSVGTLACGFA------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNK  144 (496)
T ss_pred             HHHHHHHHHHH------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            99999888876                        478889999999999999999999999999999998      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHH
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACA  227 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~  227 (591)
                      +.++.+.+.++|..++|.+.+.+.+.+||++.|++.++.
T Consensus       145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            999999999999999999999999999999998875443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=4.4e-21  Score=204.31  Aligned_cols=172  Identities=15%  Similarity=0.083  Sum_probs=144.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .+|..+......++..+......+.+|.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            45666666666666666666556666655 568999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .++.+++..+                        .+...+++.|++.|++.+...+....+..|.+++++      ++++
T Consensus        84 ~~~~~~~~~~------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  133 (394)
T PRK11652         84 ILGTLVALFA------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHA  133 (394)
T ss_pred             HHHHHHHHHH------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHH
Confidence            9888888765                        477888999999999988877777888889888887      8999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLV  233 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~  233 (591)
                      .++.+.+..++..++|.+++.+.+..||++.|++.++..++..+
T Consensus       134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999889999999887665444333

>TIGR00898 2A0119 cation transport protein

Probab=99.89  E-value=1.7e-21  Score=214.35  Aligned_cols=386  Identities=13%  Similarity=0.081  Sum_probs=230.1

Q ss_pred             HHhhhhcCCC---hHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 007736           57 TYLTGTMHLG---NASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLN  133 (591)
Q Consensus        57 ~yl~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  133 (591)
                      ..+.+++|++   ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++.+++              
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~--------------  177 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS--------------  177 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3456789998   89999999999999999999999999997 99999999999999998888876              


Q ss_pred             CCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcc
Q 007736          134 HGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                                .+++.+++.|++.|++.++..+...+++.|++|+++      |+++.++...+..+|.+++|.++..+.+
T Consensus       178 ----------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       178 ----------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             ----------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                      588899999999999999999999999999999999      9999999988999999999988766653


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCcccccccccc
Q 007736          214 NLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQR  293 (591)
Q Consensus       214 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (591)
                         ||+.|++.++..++..+..+ ..++.+.....+...++..+.+....+..+...+++   ..+              
T Consensus       242 ---wr~~~~~~~i~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~---~~~--------------  300 (505)
T TIGR00898       242 ---WRWLQLAVSLPTFLFFLLSW-FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE---VLS--------------  300 (505)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHH---HHh--------------
Confidence               99999888766555544443 333321110011111222222222222211111000   000              


Q ss_pred             CCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHH-HHHHHHHHHHhccccceeeeeeccccc
Q 007736          294 LPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI-WATTIIFWTVYAQMTTFSVSQATTMNR  372 (591)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (591)
                               .....   +...   . ..+..+     .+....+.+...... +.........+... ..+.. .     
T Consensus       301 ---------~~~~~---~~~~---~-~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----  352 (505)
T TIGR00898       301 ---------LSLEK---DLSS---S-KKQYSF-----LDLFRTPNLRKTTLCLMMLWFTTAFSYYGL-VLDLG-N-----  352 (505)
T ss_pred             ---------hhhhh---hhhh---c-cCCCcH-----HHHhCChHHHHHHHHHHHHHHHHHHHHHHH-hcccc-c-----
Confidence                     00000   0000   0 000000     000001111111111 11000000111000 11110 0     


Q ss_pred             cccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007736          373 HIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHG  452 (591)
Q Consensus       373 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  452 (591)
                       +   +.+.........+..+....+..++.+|++||           +.+.+++++.+++++++....           
T Consensus       353 -~---~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr-----------~~~~~~~~~~~~~~l~~~~~~-----------  406 (505)
T TIGR00898       353 -L---GGNIYLDLFISGLVELPAKLITLLLIDRLGRR-----------YTMAASLLLAGVALLLLLFVP-----------  406 (505)
T ss_pred             -c---CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHcC-----------
Confidence             0   00111111222233334444555555544443           446677777777766665531           


Q ss_pred             CCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 007736          453 LTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKK  532 (591)
Q Consensus       453 ~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~  532 (591)
                               ....++.+...++.+++.....+..+.+..|.+|++.|++++|+.+....+|+.+++.+.+ +.+..    
T Consensus       407 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~----  472 (505)
T TIGR00898       407 ---------VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKW----  472 (505)
T ss_pred             ---------CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHH----
Confidence                     1122333444556666677777888889999999999999999999999999999999988 43210    


Q ss_pred             CccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007736          533 PWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDK  574 (591)
Q Consensus       533 ~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~  574 (591)
                                 ....++++++.++++.++. ++.++++++..
T Consensus       473 -----------~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l  502 (505)
T TIGR00898       473 -----------LFLPLVLFGGLALLAGILT-LFLPETKGVPL  502 (505)
T ss_pred             -----------HhhHHHHHHHHHHHHHHHH-HcCcCCCCCCC
Confidence                       1234666666666665544 34566665543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=1e-20  Score=203.03  Aligned_cols=151  Identities=11%  Similarity=0.088  Sum_probs=132.3

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcc
Q 007736           59 LTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSC  138 (591)
Q Consensus        59 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (591)
                      +.+++|.+..+.++..+.+.+++.++.++.|+++||+ |||+++..+.++.+++.++++.+                   
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a-------------------  101 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT-------------------  101 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence            5678999999999999999999999999999999998 99999999999999999888876                   


Q ss_pred             cccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccc
Q 007736          139 IQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                           .+...++++|+++|++.+...+....++.|.+|+++      |++.+++.+...++|..+||.+++.+.+..||+
T Consensus       102 -----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~  170 (413)
T PRK15403        102 -----TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK  170 (413)
T ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence                 578889999999999988766667788899999988      999999999999999999999999999888999


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCC
Q 007736          219 WGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       219 ~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +.|++.++..+++.+..++..+
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Confidence            9999887766555544333333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.89  E-value=3.5e-21  Score=205.18  Aligned_cols=164  Identities=13%  Similarity=0.165  Sum_probs=136.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |+++.+....++.+++.......++.. .+++|.+..+.+++.+.+.+.+.++.++.|+++||+ ||||++.++.++.++
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            356667777888777665555555554 568899999999999999999999999999999998 999999999999988


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +.+++...                        .+.   ++.|+++|++.+...|...+++.|++|+++      |+++.+
T Consensus        81 ~~~~~~~~------------------------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~  127 (393)
T PRK11195         81 GCLLMLFG------------------------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANG  127 (393)
T ss_pred             HHHHHHHH------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            88777654                        232   678999999999999999999999999998      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFG  231 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~  231 (591)
                      +.+...++|..+||.++|++.+. .|+..+.+.+.+.+++
T Consensus       128 ~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        128 WMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            99999999999999999999875 3666666555443333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=2.1e-21  Score=208.64  Aligned_cols=392  Identities=11%  Similarity=0.003  Sum_probs=224.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.+|...+..++...++....++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ ||||++.++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4677777888888888888999999999999999999999999999999999999999999998 999999887666554


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHH-HHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLV-VLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +..........                     .... ....+..+.++..+.........+.++.++..    .+++..+
T Consensus        89 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~  143 (420)
T PRK09528         89 LFGPFFIYVFA---------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEY  143 (420)
T ss_pred             HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccc
Confidence            43322111000                     0000 11112222233333322233333333332111    1167778


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCC
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL  270 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (591)
                      +..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+...++.++++..+++                   
T Consensus       144 g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  203 (420)
T PRK09528        144 GRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-------------------  203 (420)
T ss_pred             hhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-------------------
Confidence            88888889999999999998876 4899999887766555544443332221111000000                   


Q ss_pred             CCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHH-HHHHH
Q 007736          271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLP-IWATT  349 (591)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  349 (591)
                      +                +..    ++..  ...+.....            +             .+.++.... .....
T Consensus       204 ~----------------~~~----~~~~--~~~~~~~~l------------~-------------~~~~~~l~l~~~~~~  236 (420)
T PRK09528        204 L----------------GAN----ASAV--SLKDALALL------------K-------------LPKFWFLVLYVIGVA  236 (420)
T ss_pred             h----------------hcc----cccc--cHHHHHHHc------------c-------------CCCeEeehHHHHHHH
Confidence            0                000    0000  000000000            0             000101111 11111


Q ss_pred             HHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHH
Q 007736          350 IIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVL  429 (591)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~  429 (591)
                      ..+.....+.+.++....  .+.+.+  ....+.......+...++.++.+++.+|+.+|           +.+..+.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l  301 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFF--ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTI  301 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH--hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHH
Confidence            111122222222221110  000100  00012223333334445555666666444433           346667777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH-HHH
Q 007736          430 SIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL-FLS  508 (591)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl-~~~  508 (591)
                      .+++.+++.+.                      .+.+.++...++.+++.....+....++.+..|++.+++..+. +++
T Consensus       302 ~~~~~~l~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  359 (420)
T PRK09528        302 MAVRIIGSGFA----------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQF  359 (420)
T ss_pred             HHHHHHHHHhc----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHH
Confidence            77776666543                      1344555667778888877777778889999999999988765 677


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          509 TLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFAR  567 (591)
Q Consensus       509 ~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  567 (591)
                      ...+|..+++.+.|++.+..|              +...|...+++.++..++.++..+
T Consensus       360 ~~~lg~~ig~~~~G~l~~~~G--------------~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        360 AKQLGAVFLSTLAGNLYDSIG--------------FQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC--------------chHHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999999999986432              335677777777777665555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.88  E-value=8.8e-21  Score=204.83  Aligned_cols=172  Identities=11%  Similarity=0.072  Sum_probs=127.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH-HHH-----HHHHHHHHhhhHHHhhhhchhHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTV-TNF-----LGTSFMLCLLGGFIADTFLGRYLTIAI  104 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~-~~~-----~~~~~i~~~~~G~laD~~~Grk~~~~~  104 (591)
                      ++.....++..+++.+....+....| .+.++++.+..+.+... +..     .+...+++++.|+++||+ ||||.++.
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence            44556666667777766666554444 67778888877655433 222     222246789999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 007736          105 FATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERN  184 (591)
Q Consensus       105 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  184 (591)
                      +.+++.++.++++++.+...++                ......++++|+++|++.+...+....+++|++|+++     
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-----  150 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIG----------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR-----  150 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHH----------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-----
Confidence            9999999999998862110000                0001246889999999999999988999999999999     


Q ss_pred             ccchhhhhhHHHHhhchhhhhhhhhhh--------ccccccchhHHHHHH
Q 007736          185 QMTNFFNWFFFFISIGSLAAVTVLVYI--------QDNLGREWGYGICAC  226 (591)
Q Consensus       185 ~r~~~~~~~~~~~~ig~~~~p~i~~~l--------~~~~g~~~~f~~~~~  226 (591)
                       |+++.+++....++|..+++.+++.+        .+.+|||++|++.++
T Consensus       151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence             99999998888888888887777665        246799999987544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.88  E-value=2.4e-21  Score=209.50  Aligned_cols=177  Identities=11%  Similarity=0.025  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT  114 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  114 (591)
                      +..++...+...........+ +++++ .|++.++.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~-p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~  106 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALAM-PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVML  106 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhhh-HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHH
Confidence            333333333333333334344 45665 599999999999999999999999999999998 999999999888888887


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736          115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF  194 (591)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (591)
                      +++.....                    ..+...+.+.|++.|++.+...+.....+.|++|+++      |++++++++
T Consensus       107 ~~~~~~~~--------------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~  160 (438)
T TIGR00712       107 LMGFVPWA--------------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWN  160 (438)
T ss_pred             HHhccccc--------------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHH
Confidence            76654110                    0356677888999999999988888899999999999      999999999


Q ss_pred             HHHhhchhhhhhhhhhhc-cccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          195 FFISIGSLAAVTVLVYIQ-DNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~-~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      .+.++|+.++|.+.+.+. +..+|+..|++.++..++..+..++..+
T Consensus       161 ~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       161 CAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999988777544 4568999999877665554444444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=1.3e-21  Score=205.51  Aligned_cols=163  Identities=13%  Similarity=0.095  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007736           43 CERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII  122 (591)
Q Consensus        43 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~  122 (591)
                      +...........+ +++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++++++   
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---   80 (379)
T TIGR00881         6 AYYLVRKNFALAM-PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS---   80 (379)
T ss_pred             HHHHhHHhhhhhh-HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---
Confidence            3333333434444 467788999999999999999999999999999999998 99999999999999999988876   


Q ss_pred             CCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchh
Q 007736          123 PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSL  202 (591)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  202 (591)
                                           .+.+.+++.|++.|++.+...+...+++.|++|+++      |+++.++.+.+.++|..
T Consensus        81 ---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~  133 (379)
T TIGR00881        81 ---------------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGG  133 (379)
T ss_pred             ---------------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHH
Confidence                                 478889999999999999999999999999999998      99999999999999999


Q ss_pred             hhh-hhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          203 AAV-TVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       203 ~~p-~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      ++| .+++.+.+..+|++.|++.++..++..+..+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       134 LLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence            999 56777777889999998877655444443333

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=2.4e-20  Score=199.07  Aligned_cols=146  Identities=12%  Similarity=0.156  Sum_probs=128.4

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcc
Q 007736           59 LTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSC  138 (591)
Q Consensus        59 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (591)
                      +++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+++.++                   
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-------------------   91 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV-------------------   91 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            5678999999999999999999999999999999998 99999999999888888888775                   


Q ss_pred             cccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccc
Q 007736          139 IQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                           .+.+.+++.|+++|++.+...+...+++.|.+|+++      +++.++..+...++|..++|.+++++.+.+||+
T Consensus        92 -----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~  160 (401)
T PRK11043         92 -----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ  160 (401)
T ss_pred             -----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence                 477888999999999988877777889999999888      888888888888899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 007736          219 WGYGICACAIVFGLVVF  235 (591)
Q Consensus       219 ~~f~~~~~~~~~~~~~~  235 (591)
                      +.|++..+..++..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        161 AIFATLFAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988776555544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=4.2e-20  Score=196.64  Aligned_cols=172  Identities=14%  Similarity=0.038  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      +.......+....+.....+.+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence            3344455555666666666666655 567999999999999999999999999999999998 99999999999999988


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      +++..+                        .+...+++.|+++|++.+...+...+++.|.+|+++      |+++.++.
T Consensus        83 ~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~  132 (392)
T PRK10473         83 LLCSLA------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLL  132 (392)
T ss_pred             HHHHHh------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            888765                        467778889999999999988889999999999998      99999999


Q ss_pred             HHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          194 FFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      +...++|..++|.+++.+.+..||++.|++.++..++..+....
T Consensus       133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888889999998887655554444333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.7e-21  Score=200.73  Aligned_cols=184  Identities=16%  Similarity=0.140  Sum_probs=162.6

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHH
Q 007736           26 SKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIF  105 (591)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~  105 (591)
                      +.+..++...++++....+++.-|.+...+ .-.++.+|++++..|++.+.+.+.+.++.|++|+|+||| .||+++.+|
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG  104 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVG  104 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeH
Confidence            344456677777888888888888766633 445788999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736          106 ATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ  185 (591)
Q Consensus       106 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (591)
                      ..++.++.+.++++                        ..++.+.+.|.+.|+|.+...|..+++++|.||.++      
T Consensus       105 ~~iW~~Av~~~~fs------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------  154 (493)
T KOG1330|consen  105 IFIWTLAVFASGFS------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------  154 (493)
T ss_pred             HHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------
Confidence            99999999999998                        689999999999999999999999999999999999      


Q ss_pred             cchhhhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       186 r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      |++.++++|+++.+|+++|.++++++.+..+ |||+|+..+++.++..++..++.++
T Consensus       155 Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  155 RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999998887 9999999887766665555555444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.87  E-value=6.5e-20  Score=194.66  Aligned_cols=362  Identities=9%  Similarity=-0.002  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH----HHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA----IFATVQ  109 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~----~~~~~~  109 (591)
                      .+.+.+..++...++-...+++|.|++ ++|+|..+++++.+.+.+...+++++.|.++||+ ||++...    ++..+.
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence            344666677777777778899999985 6899999999999999999999999999999998 8854332    222111


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .+  .++..+                        ++++.+++.|.+++.+.+...|...++..+.  +++      |++.
T Consensus        84 ~~--~~~~~~------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~  129 (382)
T TIGR00902        84 AA--AFSAGA------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLD  129 (382)
T ss_pred             HH--HHHHhh------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCC
Confidence            11  122222                        4788888999999988888888877776543  344      8899


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccC
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLD  269 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (591)
                      ++......++|..++|.+++++.+.+||+..|++..+..++..+ .+...++.   ++++++.+                
T Consensus       130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~----------------  189 (382)
T TIGR00902       130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAIPE----------------  189 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccccc----------------
Confidence            99999999999999999999999999999998876554332222 22222110   11100000                


Q ss_pred             CCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHH-HHHHHH
Q 007736          270 LPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRM-LPIWAT  348 (591)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  348 (591)
                                            .  +....                       ..+     ....+.|+++.. ...++.
T Consensus       190 ----------------------~--~~~~~-----------------------~~~-----~~~l~~~~~~~~l~~~~l~  217 (382)
T TIGR00902       190 ----------------------D--ESQGD-----------------------SAF-----IALLKNPMNLRFLAAVCLI  217 (382)
T ss_pred             ----------------------c--ccccc-----------------------hhH-----HHHHcChHHHHHHHHHHHH
Confidence                                  0  00000                       000     000111222222 112222


Q ss_pred             HHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHH
Q 007736          349 TIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLV  428 (591)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~  428 (591)
                      .......+...+.+. .. .+.+..      ..+.+.....+..++..+    +..|+.+|       .++++.+.++.+
T Consensus       218 ~~~~~~~~~~~~~~l-~~-~g~s~~------~~g~l~~~~~~~~i~~~~----~~~~l~~r-------~g~~~~l~~~~~  278 (382)
T TIGR00902       218 QGAHAAYYGFSAIYW-QA-AGISAS------ATGLLWGIGVLAEIIIFA----FSNKLFQN-------CSARDLLLISAI  278 (382)
T ss_pred             HHHHHHHHHHHHHHH-HH-CCCCHh------HHHHHHHHHHHHHHHHHH----HhHHHHhh-------CCHHHHHHHHHH
Confidence            223333333222222 11 111111      111222222222233333    33334355       344566888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHH-
Q 007736          429 LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFL-  507 (591)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~-  507 (591)
                      +..+..+.+...                      .+.+.++...++.++.+++..+....++.+. |++.|++++|+++ 
T Consensus       279 ~~~~~~~~~~~~----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~  335 (382)
T TIGR00902       279 ACVGRWAIIGAI----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNA  335 (382)
T ss_pred             HHHHHHHHHHhH----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHH
Confidence            988888777653                      2455566677999999999999999999988 9999999999987 


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHH
Q 007736          508 STLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFV  560 (591)
Q Consensus       508 ~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~  560 (591)
                      ....+|..+++.++|++.+..+              . ..|++.+++++++.+
T Consensus       336 ~~~g~g~~~g~~~~G~l~~~~g--------------~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       336 LAMGGLIAIFTAFAGFIYPTLG--------------A-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--------------H-HHHHHHHHHHHHHHH
Confidence            4678999999999999986432              2 356667777766543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=5.8e-20  Score=195.95  Aligned_cols=178  Identities=10%  Similarity=-0.032  Sum_probs=133.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |.+|......++...+...+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+.+..+....++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4578888889999999999999999999999999999999999999999999999999999998 999999987766655


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +..........+..                .......+.+.+++.+++.+...+....+..|..  ++      ++..++
T Consensus        81 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~------~~~~~g  136 (396)
T TIGR00882        81 LFAPFFIYVFGPLL----------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RN------SNFEYG  136 (396)
T ss_pred             HHHHHHHHHhhhHH----------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hh------cccccc
Confidence            44332211000000                0012334566778888888887777766665532  22      445667


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      ......++|..++|.+++.+.+ .+|+..|++.++..++..+..
T Consensus       137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~  179 (396)
T TIGR00882       137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLL  179 (396)
T ss_pred             hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHH
Confidence            7778889999999999998865 599999988876555544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=7.5e-20  Score=193.29  Aligned_cols=158  Identities=15%  Similarity=0.136  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007736           48 TLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRP  127 (591)
Q Consensus        48 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~  127 (591)
                      .....+.+|.+.+ ++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++..++...        
T Consensus         7 ~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~--------   76 (377)
T PRK11102          7 IDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA--------   76 (377)
T ss_pred             HHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH--------
Confidence            3444567777764 6899999999999999999999999999999998 99999999999999999888876        


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhh
Q 007736          128 PKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTV  207 (591)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i  207 (591)
                                      .+.+.+.+.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+
T Consensus        77 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~  134 (377)
T PRK11102         77 ----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII  134 (377)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                            467788899999999999988899999999999998      9999999999999999999999


Q ss_pred             hhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          208 LVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       208 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      ++.+.+..+|++.|++.++..++..+....
T Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        135 GGWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999899999998877665555444333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=6e-20  Score=188.11  Aligned_cols=389  Identities=15%  Similarity=0.065  Sum_probs=266.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      .+.|+++ +-...+..++..|.+.+.+..++.+++|+|..|.+++.++..+.+.+..++.|.+.||+ |.|++..++.++
T Consensus        11 ~~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l   88 (417)
T COG2223          11 IARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLL   88 (417)
T ss_pred             chhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHH
Confidence            3455544 44455566677788888899999999999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      ..+-.+..+++...|                     +.+.+++.++++|++.+.+ ++..+.++.+||+++      +|.
T Consensus        89 ~~IP~~~~~~a~~~~---------------------~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~  140 (417)
T COG2223          89 LLIPCLGLAFAVTYP---------------------STWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGL  140 (417)
T ss_pred             HHHHHHHHHHHccCC---------------------chHHHHHHHHHHhccccee-hcccccccccCChhh------hhH
Confidence            999999999986543                     5588999999999887665 677899999999999      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhccccc---cchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhh
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDNLG---REWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRK  265 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (591)
                      +.|++. ..|+|..+...+++.+....|   |+....+..+..++..+.+++..+..++.++..++..+           
T Consensus       141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-----------  208 (417)
T COG2223         141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-----------  208 (417)
T ss_pred             HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-----------
Confidence            999998 899999999999999998888   88888877777777666666654432221111110000           


Q ss_pred             cccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHH
Q 007736          266 RHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI  345 (591)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (591)
                                                      .                              ..+.+...++...+..+
T Consensus       209 --------------------------------~------------------------------~~~~v~~~~~~W~lsll  226 (417)
T COG2223         209 --------------------------------A------------------------------QLKAVFSNKDTWLLSLL  226 (417)
T ss_pred             --------------------------------h------------------------------HHHHHhcCcchHHHHHH
Confidence                                            0                              00011111222233333


Q ss_pred             HHHHHHHHHHhccccc-eeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHH
Q 007736          346 WATTIIFWTVYAQMTT-FSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIG  424 (591)
Q Consensus       346 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~  424 (591)
                      .......++.+..+.+ ++..++ ..+      ....+.......+...+..|+.+++.||++.+           +.+.
T Consensus       227 Y~~tFG~Fvgfs~~l~~~~~~~f-g~~------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----------rv~~  288 (417)
T COG2223         227 YFATFGGFVGFSAYLPMYLVTQF-GLS------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----------RVTL  288 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CCC------hhhHHHHHHHHHHHHHHHHhccchhhhhccch-----------hHHH
Confidence            3333333333333322 222221 111      22233455555566667778888888666655           5566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHH
Q 007736          425 VGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTG  504 (591)
Q Consensus       425 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g  504 (591)
                      +.+..++++....+....       .++        ...+....+..++..++..++..-..+-++...+|+ +-|.+.|
T Consensus       289 ~~f~~~~~~~~~l~~~~~-------~~~--------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G  352 (417)
T COG2223         289 AVFVGMALAAALLSLFLT-------GFG--------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTG  352 (417)
T ss_pred             HHHHHHHHHHHHHHcccc-------ccc--------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHH
Confidence            777777777666665310       000        112333334445555555666666677778887775 5688889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 007736          505 LFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARW  568 (591)
Q Consensus       505 l~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  568 (591)
                      +......+|++.-|...+...+.++             .+...|+++..+++++.+..+....+
T Consensus       353 ~vga~G~lGGf~lp~~~g~~~~~tg-------------~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         353 IVGAIGGLGGFFLPLAFGVSLDLTG-------------SYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHhccccccchhHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999888876542             35567888999888888877776544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=1.1e-19  Score=194.26  Aligned_cols=382  Identities=9%  Similarity=-0.005  Sum_probs=230.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTG-TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      |+++...+ .+...+..|.+.+.+...+.+ ++|++.+|.+++.+++.+++.++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~s~~-~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVS-CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            55554444 455555555556666666554 7999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +..++++++...+                   ..++..+++.|++.|++ +..++.....+++++|+++      |++++
T Consensus       112 i~~~~~~~a~~~~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~  165 (462)
T PRK15034        112 IPCVWLGIAVQNP-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSAL  165 (462)
T ss_pred             HHHHHHHHHHccc-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHH
Confidence            9888888752100                   13788999999999998 6677889999999999999      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhc-----c-------------ccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChh
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQ-----D-------------NLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPL  252 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~-----~-------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (591)
                      ++.....++|..+++++++.+.     .             ..+|+.++++..+..++..+..++..++.+.   ++...
T Consensus       166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~  242 (462)
T PRK15034        166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI  242 (462)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH
Confidence            9986666677766555544322     2             2235666555555544444444443322110   11110


Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccch
Q 007736          253 TQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTD  332 (591)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (591)
                      ++    ...++|                                                                    
T Consensus       243 ~~----~~~vlk--------------------------------------------------------------------  250 (462)
T PRK15034        243 AD----QLPVLQ--------------------------------------------------------------------  250 (462)
T ss_pred             HH----HHHHhC--------------------------------------------------------------------
Confidence            00    000110                                                                    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc-cccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhc
Q 007736          333 VEEVKMVIRMLPIWATTIIFWTVYA-QMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVF  411 (591)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~  411 (591)
                        +.+..+..+..++ ....+..+. +.+.+....   .+      .........+..+...+..|+.+++.||.+++  
T Consensus       251 --~~~~Wllslly~~-tFG~fvg~s~~lp~~~~~~---~~------~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~--  316 (462)
T PRK15034        251 --RLHLWLLSLLYLA-TFGSFIGFSAGFAMLAKTQ---FP------DVNILRLAFFGPFIGAIARSVGGAISDKFGGV--  316 (462)
T ss_pred             --CCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHH---cC------hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch--
Confidence              0111111222222 222222222 222222111   11      00111112222344556667788777655544  


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeec
Q 007736          412 KTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFL  491 (591)
Q Consensus       412 ~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~  491 (591)
                               +.+.++.++++++...+.....      ..          ...+.+...+.++...++.++.....+-++.
T Consensus       317 ---------~vl~~~~i~~~i~~~~~~l~lp------~~----------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        317 ---------RVTLINFIFMAIFSALLFLTLP------GT----------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhc------cc----------cccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence                     4466666655555433322210      00          1123333344444444555555555565666


Q ss_pred             ccCCc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHH
Q 007736          492 RECPK---------------------GMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWL  550 (591)
Q Consensus       492 ~~~p~---------------------~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~  550 (591)
                      +.+|+                     +..|.+.|+......+|+++-|.+.+...+.++             .+...|+.
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-------------~~~~~~~~  438 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-------------SPVGAMKV  438 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-------------CcHHHHHH
Confidence            66663                     156788888888899999999988888876543             24457888


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 007736          551 LAILSALNFVIYLAFARW  568 (591)
Q Consensus       551 ~~~~~~v~~~~~~~~~~~  568 (591)
                      +.+..+++.++.|.+..|
T Consensus       439 ~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        439 FLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999998888887654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=8.6e-20  Score=196.89  Aligned_cols=356  Identities=13%  Similarity=0.101  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh---chhHH-HHHHHHHHHHHHHHHH
Q 007736           41 EACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF---LGRYL-TIAIFATVQAAGVTIL  116 (591)
Q Consensus        41 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~-~~~~~~~~~~i~~~l~  116 (591)
                      .+..+.....+..+++.|+++.+|+++.+++.+.+...+...+..|+.|+++||.   +|||| .++++....+++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            4455666777788899999999999999999999999999999999999999983   37755 6667777888777777


Q ss_pred             HHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCC-CCChhhhhccchhhhhhHH
Q 007736          117 TISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFD-DSDPQERNQMTNFFNWFFF  195 (591)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~  195 (591)
                      ...   |...               .......+++.+++.+++.+....+..++..|..+ +++      |++..++.+.
T Consensus        88 ~~~---~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~  143 (437)
T TIGR00792        88 FTT---PDFS---------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRF  143 (437)
T ss_pred             HhC---CCCC---------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHH
Confidence            654   2110               00235566777788888888887888889999874 455      9999999888


Q ss_pred             HHhhchhhhhhhhhhhc-------cccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhccc
Q 007736          196 FISIGSLAAVTVLVYIQ-------DNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHL  268 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (591)
                      +.++|+.+++.+.+.+.       +..+|++.+.+.++..++..+..+...++.+++.+.+++                 
T Consensus       144 ~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-----------------  206 (437)
T TIGR00792       144 GATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE-----------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-----------------
Confidence            88888877766655443       245899888777765555444433333321110000000                 


Q ss_pred             CCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHH
Q 007736          269 DLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWAT  348 (591)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (591)
                                                 .+  .+..+.                   +     +...+.|.++..+....+
T Consensus       207 ---------------------------~~--~~~~~~-------------------~-----~~l~~~~~~~~~~~~~~~  233 (437)
T TIGR00792       207 ---------------------------KK--LSLKQI-------------------F-----KALFKNDQLLILCLAYLF  233 (437)
T ss_pred             ---------------------------cC--CCHHHH-------------------H-----HHHhCCHHHHHHHHHHHH
Confidence                                       00  000000                   0     000011222222222111


Q ss_pred             HHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHH
Q 007736          349 TIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLV  428 (591)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~  428 (591)
                      ....+........++.....+ +..      ..+.+.....+..++..++..++.+|+.+|           +.+.++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~  295 (437)
T TIGR00792       234 YNLAFNIKNGVQVYYFTYVLG-DPE------LFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGIL  295 (437)
T ss_pred             HHHHHHHHcchhheeEeeecC-ChH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHH
Confidence            111111222222333322111 100      112223333455555566666666444333           45677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCC-------cchhHH
Q 007736          429 LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP-------KGMKTM  501 (591)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~  501 (591)
                      +.+++++.+.+.                     +.+.+.+++..++.+++.+...+..++++.|.+|       ++.+|.
T Consensus       296 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  354 (437)
T TIGR00792       296 LMVLGYLIFFFA---------------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGL  354 (437)
T ss_pred             HHHHHHHHHHHc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHH
Confidence            777776665542                     1133344556677888888888888888888765       566899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 007736          502 STGLFLSTLSLGFFVSSLLVSLVHKVTG  529 (591)
Q Consensus       502 ~~gl~~~~~~lg~~lg~~l~~~i~~~~~  529 (591)
                      ++|++++...+|..+++.+.+++.+..|
T Consensus       355 ~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       355 VYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999987653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=1.4e-19  Score=197.77  Aligned_cols=361  Identities=14%  Similarity=0.115  Sum_probs=237.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +++..+.....+.+++.+....-++-++. ++.-|+...+++.+...+-..+..+++|.++||+ .|||+++.+-++.++
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            45666777777777887776666666655 4567888999999999999999999999999998 999999999887776


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ..+.+++.....                   ..+.+.+++..++.|++.+...|+.++++.|.+|+++      ..++.+
T Consensus        88 ~~~~L~~l~~~~-------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a  142 (524)
T PF05977_consen   88 VALLLAVLAFFG-------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA  142 (524)
T ss_pred             HHHHHHHHHHhC-------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence            665555432211                   1477888888999999999999999999999999999      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCC
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLP  271 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (591)
                      +.+...|+...+||.++|.+....|-.+.|.+.+++.++.++.+...+++.+   +++.+.+...+.+.           
T Consensus       143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~-----------  208 (524)
T PF05977_consen  143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALR-----------  208 (524)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHH-----------
Confidence            9999999999999999999998889888999988877666555444332211   11111011000000           


Q ss_pred             CCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHH
Q 007736          272 SDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTII  351 (591)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (591)
                                                ++.++.                         ..+  ...+..+..  ..++...
T Consensus       209 --------------------------~G~ryv-------------------------~~~--~~l~~~l~~--~~~~~l~  233 (524)
T PF05977_consen  209 --------------------------EGLRYV-------------------------RSS--PPLRSVLLR--SFLFNLF  233 (524)
T ss_pred             --------------------------HHHHHH-------------------------hcc--hHHHHHHHH--HHHHHHh
Confidence                                      001110                         000  011111111  1111111


Q ss_pred             HHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHH
Q 007736          352 FWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSI  431 (591)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~  431 (591)
                      .......+ ..+.....+.+      ...-+.+.+...++.++++.+..    ++.+|       .+..+.+..+.++.+
T Consensus       234 ~~a~~aLl-Pl~a~~~l~~~------a~~yGll~a~~gvGai~Gal~~~----~l~~~-------~~~~~lv~~~~~~~a  295 (524)
T PF05977_consen  234 ASAVWALL-PLFARDVLGGG------ASGYGLLLAAFGVGAILGALLLP----RLRRR-------LSSRRLVLLASLLFA  295 (524)
T ss_pred             hhHHHHhh-hHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHH----Hhhcc-------cCcchhhHHHHHHHH
Confidence            11111111 11111111111      00112233333344444433333    22233       233345667777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHH
Q 007736          432 FAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLS  511 (591)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~  511 (591)
                      ++++.+++.                      .+.+..++.+++.|++........++.+++..|+++||++++++++...
T Consensus       296 ~~~~~lal~----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~  353 (524)
T PF05977_consen  296 LALLLLALS----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF  353 (524)
T ss_pred             HHHHHHhcc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence            777776653                      2455566778888999999988889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc
Q 007736          512 LGFFVSSLLVSLVHKVT  528 (591)
Q Consensus       512 lg~~lg~~l~~~i~~~~  528 (591)
                      .+..+|.++.|.+.+..
T Consensus       354 g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  354 GGMPLGSLLWGFLADHF  370 (524)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999997644

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.86  E-value=2.5e-20  Score=205.57  Aligned_cols=401  Identities=13%  Similarity=0.067  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHH
Q 007736           69 SAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVV  148 (591)
Q Consensus        69 ~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (591)
                      +.+++.+...++..+++++.|+++|++ |||++++++.+++.+|.++++++                        ++...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a------------------------~~~~~  144 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA------------------------PSWYQ  144 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh------------------------hhHHH
Confidence            458999999999999999999999998 99999999999999999999998                        69999


Q ss_pred             HHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc--cccchhHHHHHH
Q 007736          149 LYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN--LGREWGYGICAC  226 (591)
Q Consensus       149 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~--~g~~~~f~~~~~  226 (591)
                      +.++|++.|+|.|+.....+.+++|..|++.      |+...+..+....+|..++. +.+...++  ++||..+.+..+
T Consensus       145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~-~~~~~~~~~~~~Wr~~~~~~~i  217 (513)
T KOG0254|consen  145 LIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGY-CINYGTSKVYAGWRIPLGLALI  217 (513)
T ss_pred             HHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHH-HHhhhhccCCccHHHHHHHHHH
Confidence            9999999999999999999999999999999      99999999999999999984 45555444  489988887776


Q ss_pred             HHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHh
Q 007736          227 AIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKA  306 (591)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (591)
                      ..++..+. ....++.+..--+........+.+.......    .+                         +.....+..
T Consensus       218 ~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~----~~-------------------------~~~~~~~~~  267 (513)
T KOG0254|consen  218 PAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLS----PE-------------------------DVEVELELL  267 (513)
T ss_pred             HHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCC----Cc-------------------------chHHHHHHH
Confidence            65555444 3333321111000111111111111111100    00                         000000000


Q ss_pred             h--hccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccccccc
Q 007736          307 A--IFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASL  384 (591)
Q Consensus       307 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  384 (591)
                      .  ...+... .+   .+..|....+  ....|+......+..+...     ........+...-.+..  +...+....
T Consensus       268 ~~~~~~~~~~-~~---~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~-----tG~~~~~~Y~~~if~~~--g~~~~~~~~  334 (513)
T KOG0254|consen  268 KIKLLVEAEV-AE---GKASWGELFS--PKVRKRLIIGLLLQLFQQL-----TGINYVFYYSTTIFKSA--GLKSDTFLA  334 (513)
T ss_pred             HHHHHHhhhc-cc---ccccHHHhcC--cchHHHHHHHHHHHHHHHH-----hCCceEEeehHHHHHhc--CCCCchHHH
Confidence            0  0000000 00   0001111111  0122222222222111111     11111111111001110  111111112


Q ss_pred             cccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 007736          385 TFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLS  464 (591)
Q Consensus       385 ~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  464 (591)
                      .....+...+...+...+++|++||           ..++.|...+.+++++++..........   +     .  ....
T Consensus       335 ~~~~~~v~~~~t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~---~-----~--~~~~  393 (513)
T KOG0254|consen  335 SIILGVVNFLGTLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYP---N-----S--SKGA  393 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCC---C-----c--ccch
Confidence            2222222333333445666666555           5688899999999998887642110000   0     0  0111


Q ss_pred             hhHHHHHHHHHHHH-HHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcc
Q 007736          465 VFWLVPQFFLVGAG-EAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGR  543 (591)
Q Consensus       465 ~~~li~~~~l~g~g-~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~  543 (591)
                      .++.++..++.-.. .....|..+.+..|.+|.+.|+.+.++....+++.+++-...........+              
T Consensus       394 ~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~--------------  459 (513)
T KOG0254|consen  394 GWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG--------------  459 (513)
T ss_pred             hHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence            22222222333222 223346667788999999999999999999998888887777666653210              


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHhhhccccccccccc
Q 007736          544 LYDFYWLLAILSALNFV-IYLAFARWYVYKDKRLAEE  579 (591)
Q Consensus       544 ~~~~f~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~  579 (591)
                      ....|..+++.+.+... +.+++.+++|+++.++.++
T Consensus       460 ~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~  496 (513)
T KOG0254|consen  460 IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE  496 (513)
T ss_pred             ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence            11356667777777777 7888999999999987764

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=2.3e-19  Score=193.77  Aligned_cols=153  Identities=17%  Similarity=0.119  Sum_probs=125.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      ....++.+.++.+...+........+|.+ ++++|+++.+.+++.+.+.+++.+++++.|+++||+ |||+++.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            34455666666666666666666666654 889999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.+++......                     .++..++++|+++|+|.+...+..++++.|..|+++      |...
T Consensus       102 ~~~~~l~~~~~~a---------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~  154 (438)
T PRK10133        102 ALGAALFWPAAEI---------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR  154 (438)
T ss_pred             HHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHH
Confidence            9999876422110                     478889999999999999999999999998766665      6667


Q ss_pred             hhhhHHHHhhchhhhhhhhhhh
Q 007736          190 FNWFFFFISIGSLAAVTVLVYI  211 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l  211 (591)
                      .++.+....+|..++|.+++.+
T Consensus       155 ~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        155 LNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999999887654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.86  E-value=3.1e-20  Score=195.14  Aligned_cols=159  Identities=17%  Similarity=0.126  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      +++...+..++.....+...+++|.++++++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++.++.++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456677777777888888888888889999999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchh-HHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGM-QLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      .++++++                        . +.+.+++.|+++|++.+. .+...++++|++|+++      |+++.+
T Consensus        81 ~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~  129 (366)
T TIGR00886        81 CLWAGLA------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALG  129 (366)
T ss_pred             HHHHHHH------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHH
Confidence            9888876                        4 778888999999998665 4567889999999998      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhcc----------ccccchhHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQD----------NLGREWGYGI  223 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~----------~~g~~~~f~~  223 (591)
                      ++....++|..+++.+++.+..          ..+|++.|++
T Consensus       130 ~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       130 LAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            9887788888888777766543          3489999844

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.1e-20  Score=203.08  Aligned_cols=377  Identities=12%  Similarity=0.138  Sum_probs=243.4

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccc
Q 007736           62 TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQA  141 (591)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (591)
                      .++++..+-+++.+.++.++.++.+++|+++||+ |-|+++.++.++.++++++...+..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            5788999999999999999999999999999998 9999999999999999999988854                    


Q ss_pred             chhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc-cccchh
Q 007736          142 SGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN-LGREWG  220 (591)
Q Consensus       142 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~-~g~~~~  220 (591)
                        .+...+++.|+++|++.|...|+...+.+.+.|++|      |++..++...+..+|.+++.+++|++.+. .||+.+
T Consensus       126 --~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si  197 (466)
T KOG2532|consen  126 --IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI  197 (466)
T ss_pred             --hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence              344577999999999999999999999999999999      99999999999999999999999999998 899999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcch
Q 007736          221 YGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQF  300 (591)
Q Consensus       221 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (591)
                      |++.+.+.++..++++....+.+.+.+.-+..+                                              .
T Consensus       198 fY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~E----------------------------------------------l  231 (466)
T KOG2532|consen  198 FYVFGIVGLIWFILWFLFYSDSPSKHPNISEKE----------------------------------------------L  231 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH----------------------------------------------H
Confidence            999887666555554444333222211111000                                              0


Q ss_pred             hhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccc
Q 007736          301 RFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIP  380 (591)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  380 (591)
                      +.+.......+.     ++..+.||+...    ++...+...+..+.....+++..++.++++... .+.+..      .
T Consensus       232 ~~I~~~k~~~~~-----~~~~~vP~~~i~----ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V-L~f~v~------~  295 (466)
T KOG2532|consen  232 KYIEKGKSEAHV-----KKKPPVPYKAIL----TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV-LGFDVR------E  295 (466)
T ss_pred             HHHHhccccccc-----CCCCCCCHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hCCChh------h
Confidence            000000000000     000234553111    111112222333444455556666666655432 122211      2


Q ss_pred             cccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007736          381 GASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRI--GVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPT  458 (591)
Q Consensus       381 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i--~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  458 (591)
                      .+.+.++..+..++...+.+.+.|++.+| ...   ....+++  .++....+++++.+++..              ++ 
T Consensus       296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~~-  356 (466)
T KOG2532|consen  296 TGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------DE-  356 (466)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------CC-
Confidence            35556666667777777777778777665 211   2233334  345555555555555431              11 


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHh-hhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 007736          459 AEIPLSVFWLVPQFFLVGAGEAFTY-IGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLAD  537 (591)
Q Consensus       459 ~~~~~~~~~li~~~~l~g~g~~~~~-~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~  537 (591)
                           +.+. .+.....+.+..... +..+.-..+.+ +++.+..+|+.++...++++++|.+++.+.. .+....|   
T Consensus       357 -----~~~~-a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~t~~eW---  425 (466)
T KOG2532|consen  357 -----HRLL-AVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DNTREEW---  425 (466)
T ss_pred             -----cchH-HHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CCCHHHH---
Confidence                 1111 111222222222222 33222223335 4778999999999999999999999998873 1111223   


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 007736          538 NLNQGRLYDFYWLLAILSALNFVIYLAFA  566 (591)
Q Consensus       538 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~  566 (591)
                             ...|++.+++.+++.+++.++.
T Consensus       426 -------~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  426 -------RIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             -------HHHHHHHHHHHHHhchheeEee
Confidence                   4678888999999887777765

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.84  E-value=3.8e-19  Score=214.60  Aligned_cols=156  Identities=13%  Similarity=0.157  Sum_probs=126.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCh--HHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGN--ASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      .+.+...++..++.++...+....+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            3455666666777666666666666666666666544  4468889999999999999999999998 999999998877


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .++..++..+....                     .+++.+++.|+++|++.+...+...++++|++|+++      |++
T Consensus        87 ~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~  139 (1146)
T PRK08633         87 EVGLTLLIVLAYYL---------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSR  139 (1146)
T ss_pred             HHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chh
Confidence            66666554443211                     367889999999999999999999999999999999      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhccc
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~  214 (591)
                      ++++...+.++|.++||.+++++.+.
T Consensus       140 ~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        140 ANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998765

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.84  E-value=1.6e-18  Score=189.89  Aligned_cols=175  Identities=13%  Similarity=0.105  Sum_probs=139.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh----chhHHH-HHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF----LGRYLT-IAI  104 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grk~~-~~~  104 (591)
                      .+|+.+.++...+......+.....+|.++++ .|.+.++++... ..... .++.++.|.++||+    +||||. +.+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            45567778888888888888888899999875 599999999863 22222 26899999999994    288885 556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 007736          105 FATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERN  184 (591)
Q Consensus       105 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  184 (591)
                      +.+..+++...+++..  |                   ..+++.+.+.+++.+++.+...+...++..|++|+++     
T Consensus        87 ~~i~~~~~~~~~a~~~--~-------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-----  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE--P-------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-----  140 (491)
T ss_pred             HHHHHHHHHHHHHHcC--C-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-----
Confidence            6667777777776642  1                   1367788888999999999888999999999999998     


Q ss_pred             ccchhhhhhHHHHhhchhhhhhhhhhhcc-ccccchhHHHHHHHHHHHHHH
Q 007736          185 QMTNFFNWFFFFISIGSLAAVTVLVYIQD-NLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       185 ~r~~~~~~~~~~~~ig~~~~p~i~~~l~~-~~g~~~~f~~~~~~~~~~~~~  234 (591)
                       |+++.++...+.++|..+++.+++++.+ ..|||..|++.++..++..+.
T Consensus       141 -rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        141 -RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999988 569999999887665555443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.84  E-value=2e-18  Score=185.56  Aligned_cols=386  Identities=15%  Similarity=0.073  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchh-HHHHHHHHHHHHHHHHH
Q 007736           37 ILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGR-YLTIAIFATVQAAGVTI  115 (591)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-k~~~~~~~~~~~i~~~l  115 (591)
                      +.+..++...++-...++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            55666777777777789999999999999999999999999999999999999999997 65 77888877777777766


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhcccccccccccccc--------CCCCCCChhhhhccc
Q 007736          116 LTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGS--------DQFDDSDPQERNQMT  187 (591)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~--------~~~~~~~~~~~~~r~  187 (591)
                      ..+.                        .+++.+++.|++.+++.+...+...+...        |......      |.
T Consensus        86 ~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~  135 (418)
T TIGR00889        86 AAQV------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PI  135 (418)
T ss_pred             HHHh------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ce
Confidence            6654                        36777788888888877666555544322        2222222      55


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcc
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRH  267 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (591)
                      +.+|      .+|.+++|.+++.+.....|. +|++.++..++..+. .+..++.+.++++++.  +.            
T Consensus       136 r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~--~~------------  193 (418)
T TIGR00889       136 RVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKM--SI------------  193 (418)
T ss_pred             eeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCcccccc--CH------------
Confidence            5544      368888898888774433354 455554444433332 2333332110000000  00            


Q ss_pred             cCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHH-HHHH
Q 007736          268 LDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRM-LPIW  346 (591)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  346 (591)
                                                   .+..+ .+.....                        ++ +++... ...+
T Consensus       194 -----------------------------~~~~~-~~~~~~~------------------------k~-~~~~~~~~~~~  218 (418)
T TIGR00889       194 -----------------------------KVMLG-LDAFILF------------------------KN-KRMAIFFFFSM  218 (418)
T ss_pred             -----------------------------HHHhh-hhHHHHh------------------------cC-CCeeeHHHHHH
Confidence                                         00000 0000000                        00 001011 1111


Q ss_pred             HHHHHHHHHhccccceeeeeecccccccc-cccc-ccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHH
Q 007736          347 ATTIIFWTVYAQMTTFSVSQATTMNRHIG-SFEI-PGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIG  424 (591)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~  424 (591)
                      +........+...+.+....  +.+...+ ++.. ..+...++..+..+++..+.+++.+|+.+|           +.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~  285 (418)
T TIGR00889       219 LLGAPLQITNIFGNGFLHEF--GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVML  285 (418)
T ss_pred             HHHhHHHHHHHhHHHHHHHh--cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHH
Confidence            11111111111111111100  0000000 0000 012223333334444445555555444333           5577


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHH
Q 007736          425 VGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTG  504 (591)
Q Consensus       425 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g  504 (591)
                      ++.++.+++++++.....                  .....+.+++..++.+++++...+....++.+.+|++.|++++|
T Consensus       286 ~~~~~~~v~~~l~~~~~~------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g  347 (418)
T TIGR00889       286 LSLVAWALRFGFFAYGDP------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQG  347 (418)
T ss_pred             HHHHHHHHHHHHHHHcCc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            788877777666654210                  01123444556788889988888888889999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007736          505 LFL-STLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWY  569 (591)
Q Consensus       505 l~~-~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~  569 (591)
                      +.+ ....+|..+|+.+.|++.+..++...        .+++..|.+.+++++++.+..+++.++.
T Consensus       348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~--------~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGT--------FDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhccccC--------CchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            997 56789999999999999865320000        0134567777777777777777776644

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.83  E-value=4.6e-19  Score=213.72  Aligned_cols=144  Identities=15%  Similarity=0.107  Sum_probs=111.7

Q ss_pred             HhhhhcCCCh-HHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH--HHHHHHHHHHHhhcCCCCCCCCCCCC
Q 007736           58 YLTGTMHLGN-ASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV--QAAGVTILTISTIIPSLRPPKCNLNH  134 (591)
Q Consensus        58 yl~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~  134 (591)
                      .+.+..+.+. ...++..+.+.+.+.++++++|+++||+ |||+++.....+  ......+.++..              
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------  105 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------  105 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            3444444433 3567788889999999999999999998 999986442222  222222222111              


Q ss_pred             CCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc
Q 007736          135 GQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~  214 (591)
                               .+++.++++|+++|++.+...|...+++.|++|+++      |++++++.+++.++|.++||.++|++.+.
T Consensus       106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     478899999999999999999999999999999999      99999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHH
Q 007736          215 LGREWGYGICACAIVFG  231 (591)
Q Consensus       215 ~g~~~~f~~~~~~~~~~  231 (591)
                      .||++.|+...+..+++
T Consensus       171 ~~~~~~~~~~~~~~~~~  187 (1140)
T PRK06814        171 GNFVILVALLMGIAVLG  187 (1140)
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            99998884444433333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.83  E-value=1.3e-18  Score=184.58  Aligned_cols=339  Identities=10%  Similarity=0.013  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhH----HHHHHHHHHHHHHHHH
Q 007736           40 GEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRY----LTIAIFATVQAAGVTI  115 (591)
Q Consensus        40 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk----~~~~~~~~~~~i~~~l  115 (591)
                      ..++...+.....+++|.|++ ++|.|..+++++.+.+.+...++.++.|.++||+ ||+    +.+.+...+.  ....
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~   87 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAF   87 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHH
Confidence            355556677778889999995 5899999999999999999999999999999998 984    3332222111  1111


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHH
Q 007736          116 LTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFF  195 (591)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  195 (591)
                      ....                        ++.+.+++.|++.+++.+...+...++..++  +++      |++.++..+.
T Consensus        88 ~~~~------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~  135 (382)
T PRK11128         88 WFGA------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRL  135 (382)
T ss_pred             HHhc------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHH
Confidence            1111                        4788888899999999888888877777765  344      7888888888


Q ss_pred             HHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCC
Q 007736          196 FISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPS  275 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (591)
                      ..++|..+||.+++++.+++||+..|++.++..++..+.. ...++   +++++++.+                      
T Consensus       136 ~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~----------------------  189 (382)
T PRK11128        136 WGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ-LLRPT---IMPQGESRQ----------------------  189 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HccCC---CCCcccccc----------------------
Confidence            8899999999999999999999999987765444333322 22221   111110000                      


Q ss_pred             CcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHH-HHHHHHHHHH
Q 007736          276 MFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLP-IWATTIIFWT  354 (591)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  354 (591)
                                         +..+                      ....+     .+..+.|.++.... .++.......
T Consensus       190 -------------------~~~~----------------------~~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~  223 (382)
T PRK11128        190 -------------------QESA----------------------GWPAW-----KALLKEPTVWRFLLCVSLLQGSHAA  223 (382)
T ss_pred             -------------------cccc----------------------ccchH-----HHHHcChhHHHHHHHHHHHHHHhHh
Confidence                               0000                      00000     00011122222111 1111222222


Q ss_pred             HhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHH
Q 007736          355 VYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAM  434 (591)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~  434 (591)
                      .+...+.+. .+ .+.+..      ..+.......+..+....+.+++.    +|       .++.+.+..+.++.++++
T Consensus       224 ~~~~~~~~~-~~-~g~s~~------~~g~~~~~~~~~~~~~~~~~g~l~----~r-------~~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        224 YYGFSAIYW-QA-AGYSAS------TIGYLWSLGVVAEVLIFAFSNRLF----RR-------WSARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHH-HH-CCCCHh------HHHHHHHHHHHHHHHHHHHHHHHH----HH-------CCHHHHHHHHHHHHHHHH
Confidence            222222211 11 111110      112222222333333333444443    44       233355777787777776


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHH-HHHHHH
Q 007736          435 VAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFL-STLSLG  513 (591)
Q Consensus       435 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~-~~~~lg  513 (591)
                      +.+...                      .+.+.+++..++.++++++..+....+..+. +++.+++.+++++ ....+|
T Consensus       285 ~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g  341 (382)
T PRK11128        285 GLMGST----------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGS  341 (382)
T ss_pred             HHHHhh----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHH
Confidence            666543                      2445556677888999998888888888886 4555788999887 556778


Q ss_pred             HHHHHHHHHHhhccc
Q 007736          514 FFVSSLLVSLVHKVT  528 (591)
Q Consensus       514 ~~lg~~l~~~i~~~~  528 (591)
                      ..+|+.+.|.+.+..
T Consensus       342 ~~ig~~i~G~l~~~~  356 (382)
T PRK11128        342 IAIMTVLSGFLYQHL  356 (382)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            899999999998643

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.83  E-value=4.1e-19  Score=187.61  Aligned_cols=164  Identities=13%  Similarity=0.121  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHhhhhcC--CChHHHHHHHHH-----HHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q 007736           45 RLTTLGIAVNLVTYLTGTMH--LGNASAANTVTN-----FLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILT  117 (591)
Q Consensus        45 ~~~~~~~~~~l~~yl~~~~~--~~~~~~~~~~~~-----~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~  117 (591)
                      .+..+.+.. +..++.++..  .+.++.+.+.+.     ..+...+++++.|+++||+ |||+++.++.++..++.++++
T Consensus         6 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         6 WFDFYLYGF-AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             HHHHHHHHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHh
Confidence            344444343 4444444432  445555554433     2233456889999999998 999999999999999998888


Q ss_pred             HHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHH
Q 007736          118 ISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFI  197 (591)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  197 (591)
                      ++.+.+.                ........+++.|+++|++.+...+...++++|.+|+++      |++..++.+.+.
T Consensus        84 ~~~~~~~----------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~  141 (394)
T TIGR00883        84 LLPSYAT----------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGA  141 (394)
T ss_pred             hCCChhh----------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHH
Confidence            7622110                000112357889999999999999999999999999998      999999999999


Q ss_pred             hhchhhhhhhhhhhc--------cccccchhHHHHHHHHHHHH
Q 007736          198 SIGSLAAVTVLVYIQ--------DNLGREWGYGICACAIVFGL  232 (591)
Q Consensus       198 ~ig~~~~p~i~~~l~--------~~~g~~~~f~~~~~~~~~~~  232 (591)
                      .+|..+++.+++.+.        +.++|++.|++.++..+++.
T Consensus       142 ~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       142 PVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            999999988776553        35689999887766544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.83  E-value=4.7e-21  Score=202.71  Aligned_cols=365  Identities=38%  Similarity=0.618  Sum_probs=235.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCC
Q 007736           99 YLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDS  178 (591)
Q Consensus        99 k~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  178 (591)
                      .|++.++.+++.+|.++++++...+.+               ..+.+...++++.++.++|.|+..|+..++.+|+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~   65 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED   65 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence            378999999999999998887653321               11235678899999999999999999999999999987


Q ss_pred             ChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeec-cCCCChhhH-HH
Q 007736          179 DPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFK-KLVGSPLTQ-IA  256 (591)
Q Consensus       179 ~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~  256 (591)
                      +.   .+|.+++++++++.|+|+.+++.+.+++.+++||.+.|.++.+..+++++.++...++++.+ ++.+.+..+ ..
T Consensus        66 ~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~  142 (372)
T PF00854_consen   66 DD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK  142 (372)
T ss_dssp             TT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred             ch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence            31   23999999999999999999999999999999999999999999999999999988887766 555666555 34


Q ss_pred             HHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccccccccc-CccchhHH
Q 007736          257 SVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNL-ATLTDVEE  335 (591)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  335 (591)
                      .++..+.+++....+....+.....+     ..+.......  ...........+         ....|.. ....+++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  206 (372)
T PF00854_consen  143 LVLVAAFKKRKLAVPKGSSWLDWALF-----QYSERSIFGI--IVFIRAAVIFFP---------EIFFWALFCQVQRVEE  206 (372)
T ss_dssp             HHHHHHHHHHCCCH-HHHHHHHHHHH-----HHCCCCCCCC--CCHHHHHHHHCC---------CHHHHTTTSSTTTHHH
T ss_pred             HHHHHHHHHhhcccccchHHHHHhhh-----hhhhhhhhhh--hhhccchhhhhh---------hhhhcccCCccceeee
Confidence            44455555544433321111111000     0000000000  000000000000         0111111 12334456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccc-cccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCC
Q 007736          336 VKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGS-FEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTP  414 (591)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~  414 (591)
                      .+.+.+.+..+.+.+.++....+.+.+...+...++..+++ +.+|+..+.+++.+..+++.|+.++++.++.|+..   
T Consensus       207 ~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~---  283 (372)
T PF00854_consen  207 LKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI---  283 (372)
T ss_dssp             CCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-----
T ss_pred             eeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc---
Confidence            66677777777777778788777777776676677766777 89999999999999999999999999999988322   


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccC
Q 007736          415 QGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLREC  494 (591)
Q Consensus       415 ~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~  494 (591)
                       ..++..++.+|++++.+++++....+.++.....++|         ..+.+|.+..+++..+++.+..+...+...|.+
T Consensus       284 -~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a  353 (372)
T PF00854_consen  284 -QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFA  353 (372)
T ss_dssp             -----HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred             -cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence             2788899999999999999998887765554333333         345577779999999999999988888777777


Q ss_pred             CcchhHHHHHHHHHHH
Q 007736          495 PKGMKTMSTGLFLSTL  510 (591)
Q Consensus       495 p~~~rg~~~gl~~~~~  510 (591)
                      |++..+..+|++....
T Consensus       354 ~~~~p~~m~~~~~~~~  369 (372)
T PF00854_consen  354 PSRAPSSMMGIWFALS  369 (372)
T ss_dssp             TTT-SSSSTHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHh
Confidence            7777777777766554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.81  E-value=2.9e-23  Score=225.03  Aligned_cols=397  Identities=15%  Similarity=0.111  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHH
Q 007736           68 ASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLV  147 (591)
Q Consensus        68 ~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (591)
                      .+.++..+...++..++++++|+++||+ |||++++++.++..++.++.+++...                     .+..
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~  103 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFW  103 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------cccc
Confidence            3567888999999999999999999998 99999999999999999999987210                     1788


Q ss_pred             HHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc---cccchhHHHH
Q 007736          148 VLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN---LGREWGYGIC  224 (591)
Q Consensus       148 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~---~g~~~~f~~~  224 (591)
                      .+.++|++.|++.|+..+....++.|..|++.      |++..++.+.+..+|..++..++-.+.+.   .+||..+.+.
T Consensus       104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~  177 (451)
T PF00083_consen  104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG  177 (451)
T ss_pred             cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999      99999999988899988887766544333   3599988877


Q ss_pred             HHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhH
Q 007736          225 ACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLD  304 (591)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (591)
                      .+..++..+...+                                .||+|+++...++.+++ ++...++.+.+..    
T Consensus       178 ~~~~l~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A-~~~l~~~~~~~~~----  220 (451)
T PF00083_consen  178 AIPSLLVLLLRFF--------------------------------LPESPRWLLSKGRDEEA-EKVLRKLRGKEIE----  220 (451)
T ss_pred             ccccccccccccc--------------------------------cccccceeccccccccc-ccccccccccccc----
Confidence            7654433222111                                34556666555544444 2222222111000    


Q ss_pred             HhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHH-HHHHHHhccccceeeeeeccccccccccccccc-
Q 007736          305 KAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATT-IIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGA-  382 (591)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  382 (591)
                      ..+.....+..++++..+..|+...+.. ..++++...+.+.... ...+....++.+..... .         +.... 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~---------~~~~~~  289 (451)
T PF00083_consen  221 DEEIEEIKAEKKESQESKASWRDLFRNK-KYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-A---------GISNSF  289 (451)
T ss_pred             cccccccccccccccccceeeeeccccc-cccccccccccccccccccccccccccccccccc-c---------cccccc
Confidence            0000000000000000111222111111 0122222222111111 11101111111111110 0         11111 


Q ss_pred             cccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCCCCc
Q 007736          383 SLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAAL-CEIKRLRAARSHGLTNDPTAEI  461 (591)
Q Consensus       383 ~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  461 (591)
                      .......+..++...+...+++|++||           +.+..+..+++++.+.+.. ...         + .+.+   .
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~GRr-----------~~~i~~~~~~~~~~~~~~~~~~~---------~-~~~~---~  345 (451)
T PF00083_consen  290 LATLILGLVNFLGTLLAIFLIDRFGRR-----------KLLIIGLLLMAICSLILGIIFFL---------G-VSSS---S  345 (451)
T ss_pred             ccccccccccccccccccccccccccc-----------ccccccccccccccccccccccc---------c-cccc---c
Confidence            112222222233333334555555454           3356677777776666641 100         0 0000   0


Q ss_pred             cchhhHHHHHHHHHHHHHH-HHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccC
Q 007736          462 PLSVFWLVPQFFLVGAGEA-FTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLN  540 (591)
Q Consensus       462 ~~~~~~li~~~~l~g~g~~-~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~  540 (591)
                      ..+... +....+...+.. ...+..+.+..|.+|.+.|+++.|+......+++++++.+.+.+.+..+           
T Consensus       346 ~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-----------  413 (451)
T PF00083_consen  346 WWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-----------  413 (451)
T ss_pred             cccccc-ceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence            011211 222222222222 3346667889999999999999999999999999988888777654321           


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 007736          541 QGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEE  579 (591)
Q Consensus       541 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  579 (591)
                         ....+++.++.+++..++.+++.+++|+++.+|+++
T Consensus       414 ---~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  414 ---GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             ---ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence               123577788888888888999999999999988764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=1.3e-18  Score=182.61  Aligned_cols=326  Identities=12%  Similarity=0.113  Sum_probs=205.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007736           52 AVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCN  131 (591)
Q Consensus        52 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  131 (591)
                      .+.+| .+.+++|++.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+++ ..            
T Consensus        20 ~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------   84 (355)
T TIGR00896        20 GPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------   84 (355)
T ss_pred             cccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh------------
Confidence            34444 46678999999999999999999999999999999998 99999999988887777665 33            


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhh
Q 007736          132 LNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYI  211 (591)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l  211 (591)
                                  .+...+++.|++.|+|.+...+..+.++.|.+| ++      |+++.++++...++|..+++.+++.+
T Consensus        85 ------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        85 ------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        367778899999999999888788888888886 46      89999999999999999999999888


Q ss_pred             cccc--ccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCcccccc
Q 007736          212 QDNL--GREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKK  289 (591)
Q Consensus       212 ~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (591)
                      .+..  +|++.|.+.++..++.....   .++.+++++++++                                      
T Consensus       146 ~~~~~~~w~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------------------------------  184 (355)
T TIGR00896       146 AQHSGGHWQQALAWWALPALLALLAW---IPQVRRRVAANQT--------------------------------------  184 (355)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHH---hhhhccccCCCCC--------------------------------------
Confidence            7765  38888876654433332221   1111111000000                                      


Q ss_pred             ccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHH-HHHHHHHHHHHHhccccceeeeeec
Q 007736          290 TKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRML-PIWATTIIFWTVYAQMTTFSVSQAT  368 (591)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  368 (591)
                             ..                      ...+++..     ++ +...... ...+....++....+.+.++..  .
T Consensus       185 -------~~----------------------~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~  227 (355)
T TIGR00896       185 -------TT----------------------RLTPVRIW-----RS-PLAWQVTVFFGLQSGLYYSLIGWLPAILIS--H  227 (355)
T ss_pred             -------CC----------------------CCCCchhh-----cC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence                   00                      00000000     11 1111111 1112222233333333332211  1


Q ss_pred             cccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007736          369 TMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAA  448 (591)
Q Consensus       369 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~  448 (591)
                      +.+..      ..+...+...+..++..++.+++.+|..+|          ++.+.++..+.+++.+.+....       
T Consensus       228 g~~~~------~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------  284 (355)
T TIGR00896       228 GASAA------TAGSLLALMQLAQAASALLIPALARRVKDQ----------RGIVAVLAVLQLVGLCGLLFAP-------  284 (355)
T ss_pred             CCCHH------HHHHHHHHHHHHHHHHHHhHHHHHhhhccc----------hHHHHHHHHHHHHHHHHHHHhh-------
Confidence            11111      122333444455556666666665433211          1335667777777766565431       


Q ss_pred             hhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007736          449 RSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLREC-PKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKV  527 (591)
Q Consensus       449 ~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~  527 (591)
                                   . ...+  ...++.|++.+...|...+.+.+.. +++.++..+|+.+....++..+++.+.|++.+.
T Consensus       285 -------------~-~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       285 -------------M-HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             -------------h-hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         1 1111  1346778888888887666665444 456779999999988899999999999999865


Q ss_pred             c
Q 007736          528 T  528 (591)
Q Consensus       528 ~  528 (591)
                      .
T Consensus       349 ~  349 (355)
T TIGR00896       349 S  349 (355)
T ss_pred             h
Confidence            4

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.80  E-value=4.5e-17  Score=174.10  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh----chhHH-HHHHHHHHHHH
Q 007736           37 ILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF----LGRYL-TIAIFATVQAA  111 (591)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grk~-~~~~~~~~~~i  111 (591)
                      ++..++.+...+.....-+|.|+++ .|++.+++|++......  .+..++.|+++||+    +|||| .+.++.++.++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            4566777888888888899999985 59999999999776664  69999999999996    16665 67777788877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +...+++...                     ..+.+.+++..++.++..+...+...+++.|++|+++      |+++.+
T Consensus        81 ~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~  133 (402)
T PRK11902         81 SIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAA  133 (402)
T ss_pred             HHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHH
Confidence            7777666411                     1356666667677788888888999999999999999      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccc-cccchhHHHHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDN-LGREWGYGICACAIVFGLV  233 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~-~g~~~~f~~~~~~~~~~~~  233 (591)
                      +...+.++|..+++.+++.+.+. .||+..|++.++..++..+
T Consensus       134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988875 5999999987765554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.79  E-value=3.7e-17  Score=175.15  Aligned_cols=169  Identities=16%  Similarity=0.117  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      ++.+....++....+....+.+ +.+++++|++..+.+++.+.+.+++.++.++.|++.||+ |||+++.++.++.+++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            4444455555555543333444 556889999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      +++..+...                     .+++.+++.|++.|+|.|...+...+++.+..|+++      |++..++.
T Consensus        83 ~l~~~~~~~---------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~  135 (410)
T TIGR00885        83 FLFWPAAEI---------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLA  135 (410)
T ss_pred             HHHHHHHhh---------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHH
Confidence            876544211                     377888999999999999999999999999999888      88899999


Q ss_pred             HHHHhhchhhhhhhhhhhccc--------------------------cccchhHHHHHHHHHHH
Q 007736          194 FFFISIGSLAAVTVLVYIQDN--------------------------LGREWGYGICACAIVFG  231 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~~l~~~--------------------------~g~~~~f~~~~~~~~~~  231 (591)
                      +...++|..++|.+++.+...                          .+|+++|.+.++..++.
T Consensus       136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~  199 (410)
T TIGR00885       136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV  199 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877422                          36999998776654443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.79  E-value=4.2e-17  Score=178.16  Aligned_cols=365  Identities=10%  Similarity=0.075  Sum_probs=208.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhh----hhchh-HHHHHHHHHHHHH
Q 007736           37 ILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIAD----TFLGR-YLTIAIFATVQAA  111 (591)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Gr-k~~~~~~~~~~~i  111 (591)
                      --++.+..++.+..+..+++.|+++.+|++...+|.+..+.-+.-++..|+.|+++|    |+ || |+.++++....++
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i   89 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV   89 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence            335566677778888899999999999999999999999999999999999999999    55 88 5566667777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCC-CCCChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQF-DDSDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~  190 (591)
                      +..++...   |...               .......+++..++..++......+..++.+|+. ++++      |.+..
T Consensus        90 ~~~llf~~---p~~~---------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~  145 (473)
T PRK10429         90 VLFLLFSA---HLFE---------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLV  145 (473)
T ss_pred             HHHHHHcC---CCCC---------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHH
Confidence            76666432   2110               0023444555566667788888888889999998 4565      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccc-------cccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHH
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDN-------LGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAW  263 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (591)
                      ++.....++|+.+++.+...+.+.       .+|+....+.++..++..+..+...+|... +++.++            
T Consensus       146 ~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~------------  212 (473)
T PRK10429        146 PYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVS------------  212 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccc------------
Confidence            887777777766665554433221       234444444443333333332222222110 000000            


Q ss_pred             hhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHH
Q 007736          264 RKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRML  343 (591)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (591)
                                                     ++.+...+.+...                        .+.+.|.++..+
T Consensus       213 -------------------------------~~~~~~~~~~~~~------------------------~~~~n~~~~~ll  237 (473)
T PRK10429        213 -------------------------------AEGSHLTLKDIVA------------------------LIYKNDQLSCLL  237 (473)
T ss_pred             -------------------------------ccccCCCHHHHHH------------------------HHhcCHHHHHHH
Confidence                                           0000000000000                        000112222222


Q ss_pred             HHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHH
Q 007736          344 PIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRI  423 (591)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i  423 (591)
                      ...+.........+....++...... +..      ....+.....+..++..++..++.+|+++|           +.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~------~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~  299 (473)
T PRK10429        238 GMALAYNIASNIINGFAIYYFTYVIG-DAD------LFPYYLSYAGAANLVTLILFPRLVKSLSRR-----------ILW  299 (473)
T ss_pred             HHHHHHHHHHHHHhhheeeEEEEECC-CHH------HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHH
Confidence            22222222222222222333322111 111      011222233344455556666555333333           445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCC-------c
Q 007736          424 GVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECP-------K  496 (591)
Q Consensus       424 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p-------~  496 (591)
                      .++..+.+++.+.+.....           .      ...+.+.+++..++.+++.+...+..++++.|.++       .
T Consensus       300 ~~~~~~~~~~~~~~~~~~~-----------~------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~  362 (473)
T PRK10429        300 AGASIFPVLSCGVLLLMGL-----------A------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGI  362 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----------c------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCc
Confidence            6666665655554433200           0      11234444556677888888888888888888866       3


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 007736          497 GMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTG  529 (591)
Q Consensus       497 ~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~  529 (591)
                      +..|...|.+++...++..+++.+.|++.+..|
T Consensus       363 R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        363 RCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            445778999999999999999999999987654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.78  E-value=8.8e-17  Score=173.13  Aligned_cols=445  Identities=13%  Similarity=0.069  Sum_probs=253.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhh----hchhHHHHHHH-HH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADT----FLGRYLTIAIF-AT  107 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~----~~Grk~~~~~~-~~  107 (591)
                      .+..+....+..++++-...++++.|+ +++|.+....+++.....+...+.+++.|+++||    + ||||.++++ .+
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            455666666777888778888888887 5799999999999999999999999999999995    6 999998875 55


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      ..+++.++++++..+..+-.    .++..   ...........++..+..++.....++..++++|.+|+++++    ++
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~----~~~~~---~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~  151 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFG----DNLDK---KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TR  151 (477)
T ss_pred             HHHHHHHHHHhCchhhhhcc----ccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HH
Confidence            55666666666422110000    00000   000011233444555556677777888899999999988721    36


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhh--cccc-------------ccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChh
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYI--QDNL-------------GREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPL  252 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l--~~~~-------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (591)
                      .+.++++...++|+.+|+.++++.  .+.+             +.+..|++.+++.++..++.++..+|.+..++++.+.
T Consensus       152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~  231 (477)
T TIGR01301       152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN  231 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh
Confidence            799999999999999999988865  2211             4677888888777777666665555432211110000


Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccch
Q 007736          253 TQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTD  332 (591)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (591)
                      +                         +.++.        .  ++.....+                   +.-|+...   
T Consensus       232 ~-------------------------~~~~~--------~--~~~~~~~~-------------------~~i~~~~~---  254 (477)
T TIGR01301       232 S-------------------------EAAPP--------S--KHGEEAFF-------------------GELFGAFK---  254 (477)
T ss_pred             h-------------------------hcccc--------c--ccchhhhH-------------------HHHHHHHH---
Confidence            0                         00000        0  00000000                   00000000   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccccc-cccccchhhhhhhhhhhhhhhhhhhhhhc
Q 007736          333 VEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGA-SLTFFFVGSILLTVPVYDRIIVPIARKVF  411 (591)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~r~~  411 (591)
                       .--|.+.+.+...++...-|..+..+.+.+.-+.......-.+-....+ -......+...+...+.+.++.++.||.+
T Consensus       255 -~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g  333 (477)
T TIGR01301       255 -YLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWG  333 (477)
T ss_pred             -HCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             0112333444444444444444444444332221110000000000000 00111111111222244455555556643


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC--ccch-hhHHHHHHHHHHHHHHHHhhhhhe
Q 007736          412 KTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAE--IPLS-VFWLVPQFFLVGAGEAFTYIGQLD  488 (591)
Q Consensus       412 ~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-~~~li~~~~l~g~g~~~~~~~~~~  488 (591)
                      .+      +..-.++.++.++++....+...    .+++.+..++++..  .... .+..++.+.+.|+..+.....=++
T Consensus       334 ~~------k~~~~~s~~~~~~~l~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfa  403 (477)
T TIGR01301       334 AG------KRLWGIVNIILAICLAATVLVTY----VAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFA  403 (477)
T ss_pred             cc------hhHHHHHHHHHHHHHHHHHHHHh----hhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHH
Confidence            21      12236788888888888876531    00000000000000  0111 255667778889998888877788


Q ss_pred             eecccCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 007736          489 FFLRECPK--GMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFA  566 (591)
Q Consensus       489 ~~~~~~p~--~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~  566 (591)
                      ++.+..|+  +..|..+|+.|..-.+...+.+...|.+.+..+            ++....+.+.++.++++++..++..
T Consensus       404 l~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g------------~~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       404 LASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG------------GGNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             HHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC------------CCCeeHHHHHHHHHHHHHHHHHHhC
Confidence            89998884  456999999999999999999988888665443            1122467778888888888888777


Q ss_pred             hhcc
Q 007736          567 RWYV  570 (591)
Q Consensus       567 ~~~~  570 (591)
                      |+.+
T Consensus       472 ~~~~  475 (477)
T TIGR01301       472 PRPR  475 (477)
T ss_pred             CCCC
Confidence            7654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.78  E-value=2.6e-17  Score=172.71  Aligned_cols=154  Identities=14%  Similarity=0.060  Sum_probs=117.7

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh----chhHHHH-HHHHHHHHHHHHHHHHHhhcCCCCC
Q 007736           53 VNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF----LGRYLTI-AIFATVQAAGVTILTISTIIPSLRP  127 (591)
Q Consensus        53 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grk~~~-~~~~~~~~i~~~l~~~~~~~~~~~~  127 (591)
                      ..+|.+ .+++|+|.++.+++... .+...+ .++.|+++||+    +||||.+ +.+.++.++....+++...      
T Consensus         9 ~~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------   79 (356)
T TIGR00901         9 NTLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------   79 (356)
T ss_pred             hHHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc------
Confidence            344555 45789999999999644 333334 89999999996    3899975 5566666666656655411      


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhh
Q 007736          128 PKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTV  207 (591)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i  207 (591)
                                     ..+...+....++.+++.+...+...+++.|++|+++      |+++.++...+.++|..+++.+
T Consensus        80 ---------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l  138 (356)
T TIGR00901        80 ---------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSL  138 (356)
T ss_pred             ---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHH
Confidence                           1355566666777788888888899999999999998      9999999999999999999999


Q ss_pred             hhhhccccc--------cchhHHHHHHHHHHHHHHHH
Q 007736          208 LVYIQDNLG--------REWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       208 ~~~l~~~~g--------~~~~f~~~~~~~~~~~~~~~  236 (591)
                      ++.+....|        ||..|++.++..++..+..+
T Consensus       139 ~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       139 ALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            999988888        99999988876665554433

>PRK09669 putative symporter YagG; Provisional

Probab=99.78  E-value=8.9e-17  Score=174.16  Aligned_cols=173  Identities=14%  Similarity=0.114  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh---chhH-HHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF---LGRY-LTIAIFATVQA  110 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk-~~~~~~~~~~~  110 (591)
                      +.--+..+..+..+..+..+++.|+++.+|++...++.+..+..+...+..|+.|+++||.   +||| +.++++.+..+
T Consensus        12 ~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~   91 (444)
T PRK09669         12 IGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFG   91 (444)
T ss_pred             HhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHH
Confidence            3334555666666777788999999999999999999999999999999999999999993   2774 45556666666


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCC-CChhhhhccchh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDD-SDPQERNQMTNF  189 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~  189 (591)
                      ++..++...   |..+               .......+++..++.+++......+..++.+|+.++ ++      |.+.
T Consensus        92 i~~~l~f~~---p~~~---------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l  147 (444)
T PRK09669         92 VVCLLTFYT---PDFG---------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSL  147 (444)
T ss_pred             HHHHHHHhC---CCCC---------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHH
Confidence            666555432   2111               013455556666666666667777788999998844 44      8888


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhcc-------ccccchhHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQD-------NLGREWGYGICACAIVFG  231 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~-------~~g~~~~f~~~~~~~~~~  231 (591)
                      .++.....++|+.+++.+...+..       ..||+..+.+.+++.++.
T Consensus       148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~  196 (444)
T PRK09669        148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL  196 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            888888888888887765443322       235666665555444433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.1e-18  Score=177.26  Aligned_cols=441  Identities=14%  Similarity=0.042  Sum_probs=233.1

Q ss_pred             CCchhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhc-------CCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchh
Q 007736           29 GGWTSAAMILGG---EACERLTTLGIAVNLVTYLTGTM-------HLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGR   98 (591)
Q Consensus        29 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~yl~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr   98 (591)
                      .+|+.+-.+.++   -+.+....+.+....+.+-.-..       |+++...+.+.++..++..+++++.||++||+ ||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GR  113 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GR  113 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc
Confidence            356655555444   33455555555544444322222       25677888888889999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCC
Q 007736           99 YLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDS  178 (591)
Q Consensus        99 k~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  178 (591)
                      |+++-..++++.+++++++++-.           +|.      ...-...+...|+++|+|.|+.+|...++.+|..-++
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~-----------~~~------~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~  176 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVG-----------TTS------PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK  176 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCC-----------CCC------CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc
Confidence            99999999999999997776521           111      1135667888999999999999999999999988877


Q ss_pred             ChhhhhccchhhhhhHHHHhhchhhhhh----hhhhhcccc-----------ccchhHHHHHHHHHHHHHHHHhcCCcee
Q 007736          179 DPQERNQMTNFFNWFFFFISIGSLAAVT----VLVYIQDNL-----------GREWGYGICACAIVFGLVVFLSGTRRYR  243 (591)
Q Consensus       179 ~~~~~~~r~~~~~~~~~~~~ig~~~~p~----i~~~l~~~~-----------g~~~~f~~~~~~~~~~~~~~~~~~~~~~  243 (591)
                      .      |+...++.....+.|...|.+    +.+-+....           =||..|.+.++   .+++++++..+..+
T Consensus       177 ~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v---pa~~~ly~Rl~M~E  247 (538)
T KOG0252|consen  177 T------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV---PALLVLYFRLKMPE  247 (538)
T ss_pred             c------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH---HHHHHHHhhhcCCc
Confidence            7      887777654444444444433    333221111           28887776665   33344433222111


Q ss_pred             eccCCCChhhHH-HHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccc
Q 007736          244 FKKLVGSPLTQI-ASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVI  322 (591)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (591)
                           ....+.. .+-..++. .+..+....     +.++                       +... +.+.     ...
T Consensus       248 -----t~~Y~al~~~~~~~a~-~d~~k~~~~-----~~~~-----------------------~~~~-~~~~-----~~~  287 (538)
T KOG0252|consen  248 -----TARYTALVSKKLKQAA-GDMKKVLSV-----DIEA-----------------------ESTA-ESDV-----PPP  287 (538)
T ss_pred             -----chhHHHHhhcCHhhhh-hcccccccc-----ccch-----------------------hhcc-ccCC-----CCc
Confidence                 1111100 00000011 000000000     0000                       0000 0000     001


Q ss_pred             ccc-ccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeecccccccc----cccc----ccccccccchh-hh
Q 007736          323 NKW-NLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIG----SFEI----PGASLTFFFVG-SI  392 (591)
Q Consensus       323 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~----~~~~~~~~~~~-~~  392 (591)
                      +.+ .+..    ..+.+. .-.-++.....+++......+.-..+..- -.++|    ....    ..+....+... ..
T Consensus       288 ~~~~~~F~----~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I-~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~  361 (538)
T KOG0252|consen  288 SNSFGLFS----RLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVI-FSAIGVIPSANTYHELFKVAEGNLIIAVCST  361 (538)
T ss_pred             ccccchHH----HHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHH-HHhhccCCCcchHHHHHHHHHHHHHHHHHcc
Confidence            111 0001    111111 11111222222222222111111111000 00010    0000    00000111111 11


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHH
Q 007736          393 LLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQF  472 (591)
Q Consensus       393 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~  472 (591)
                      +-+-++.-.++++++||           ..-+.|++++.+.++.++....+                  ..+....++.+
T Consensus       362 vPGyw~tv~~id~iGRk-----------~iq~~GF~~~~i~~~~~~~~y~~------------------~~~~~Gf~v~y  412 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRK-----------YIQLMGFFIMTIFFFVIAGPYNQ------------------LENTIGFVVLY  412 (538)
T ss_pred             CCceeEEEEEeehhhhH-----------HHHHhhHHHHHHHHHHHcCCccc------------------ccccCceeehH
Confidence            11223444455555555           44677888888888777753210                  11222223333


Q ss_pred             HHHHHHHHHH-hhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHH
Q 007736          473 FLVGAGEAFT-YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLL  551 (591)
Q Consensus       473 ~l~g~g~~~~-~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~  551 (591)
                      .+..+...+. ......+..|.+|.+.||+.-|+...+...|..+|...+++..+.     ++ |...   .....++++
T Consensus       413 ~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~-----~y-p~~~---g~~~v~~i~  483 (538)
T KOG0252|consen  413 SLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH-----NY-PPNI---GVRNVFIIL  483 (538)
T ss_pred             HHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc-----cC-Cccc---cchHHHHHH
Confidence            3333333332 245667889999999999999999999999999999999888651     11 1111   133578889


Q ss_pred             HHHHHHHHHHHHHHhhhccccccccccccc
Q 007736          552 AILSALNFVIYLAFARWYVYKDKRLAEEGI  581 (591)
Q Consensus       552 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  581 (591)
                      ++.++++.++.+++- ++|+++++|++.+.
T Consensus       484 ~~~~~~gi~~T~l~p-Etk~~~leei~~e~  512 (538)
T KOG0252|consen  484 AGCMLLGILFTLLIP-ETKGKSLEEISNEE  512 (538)
T ss_pred             HHHHHHhHheeEEee-cccccCHHHhcChh
Confidence            999998888766655 99999998875433

>PRK09848 glucuronide transporter; Provisional

Probab=99.76  E-value=3e-16  Score=170.26  Aligned_cols=365  Identities=10%  Similarity=0.064  Sum_probs=198.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh---chhHHHH-HHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF---LGRYLTI-AIFATV  108 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~~~-~~~~~~  108 (591)
                      ..+.-.+..+..+..+....++++.|+++.+|++..++|.+.....+...+..++.|+++||.   +||||.. .++.+.
T Consensus         9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~   88 (448)
T PRK09848          9 TIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP   88 (448)
T ss_pred             HHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence            334444566677778777888889999999999999999999999999999999999999994   3667644 555554


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      ..+...++...   |.          +.    ........+++..++.+++.+...++..++..+..++.+.     |.+
T Consensus        89 ~~~~~~~~~~~---~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~  146 (448)
T PRK09848         89 LMIFSVLVFWV---PT----------DW----SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RAR  146 (448)
T ss_pred             HHHHHHHHHhC---cC----------CC----CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHH
Confidence            54444443221   10          00    0001334445555667788888887777877777655331     777


Q ss_pred             hhhhhHHH-----HhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHH
Q 007736          189 FFNWFFFF-----ISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAW  263 (591)
Q Consensus       189 ~~~~~~~~-----~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (591)
                      ..++..++     .+++..++|.+.+.........+..+. .+..+++.+.++......+++.+++.+.+          
T Consensus       147 ~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~----------  215 (448)
T PRK09848        147 LGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQP----------  215 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCC----------
Confidence            66665443     345556666665543211111111111 11122222222111111111111000000          


Q ss_pred             hhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHH
Q 007736          264 RKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRML  343 (591)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (591)
                                                           ...+.                   ++     ...+.|.+....
T Consensus       216 -------------------------------------~~~~~-------------------~~-----~l~~n~~f~~~~  234 (448)
T PRK09848        216 -------------------------------------SLKIS-------------------LQ-----TLKRNRPLFMLC  234 (448)
T ss_pred             -------------------------------------CHHHH-------------------HH-----HHhCCchHHHHH
Confidence                                                 00000                   00     000111222222


Q ss_pred             HHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccc-hhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhH
Q 007736          344 PIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFF-VGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQR  422 (591)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~  422 (591)
                      ....+....+..+.....++.....+.+..       ...+.... .+..++..++..++.    +|.       +..+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~----~r~-------g~~~~  296 (448)
T PRK09848        235 IGALCVLISTFAVSASSLFYVRYVLNDTGL-------FTVLVLVQNLVGTVASAPLVPGMV----ARI-------GKKNT  296 (448)
T ss_pred             HHHHHHHHHHHHHhhhheeeEeeecCChHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHh-------CcHHH
Confidence            111111111122222223333222111110       01111111 222334445555544    442       23356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcc-----
Q 007736          423 IGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKG-----  497 (591)
Q Consensus       423 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~-----  497 (591)
                      +.+|.++.+++.+.+.+.                    ...+.+.+++..++.++|+++..+..+++..+..|.+     
T Consensus       297 ~~~g~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g  356 (448)
T PRK09848        297 FLIGALLGTCGYLLFFWV--------------------SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTG  356 (448)
T ss_pred             HHHHHHHHHHHHHHHHHc--------------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhC
Confidence            778888888877666542                    1224455556677889999999988888988888754     


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 007736          498 --MKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTG  529 (591)
Q Consensus       498 --~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~  529 (591)
                        .+|..+|++++.+.+|..+|+.+.+.+.+..|
T Consensus       357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence              46999999999999999999999999876643

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5e-17  Score=164.49  Aligned_cols=148  Identities=14%  Similarity=0.124  Sum_probs=135.3

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccc
Q 007736           62 TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQA  141 (591)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (591)
                      .++-+++++|++.+.+.+.+.+..++.|.+.||+ |+|-.+++|++++..+++++++.                      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg----------------------  156 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG----------------------  156 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence            4567788999999999999999999999999997 99999999999999999999997                      


Q ss_pred             chhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhH
Q 007736          142 SGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGY  221 (591)
Q Consensus       142 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f  221 (591)
                        .++++++++|.++|+|.++...+..++++|.||++..     |++++|+.-.+..+|-.+||.++|.+.+..|++.+|
T Consensus       157 --~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF  229 (464)
T KOG3764|consen  157 --NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF  229 (464)
T ss_pred             --chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence              6888999999999999999999999999999998873     899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 007736          222 GICACAIVFGLVVFLSGT  239 (591)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~  239 (591)
                      .+.++++++-..+-++..
T Consensus       230 lVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  230 LVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHHHHHHHHHHHhee
Confidence            999887777655544433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.73  E-value=1.8e-16  Score=159.63  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=108.3

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccc
Q 007736           63 MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQAS  142 (591)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (591)
                      .+.+..-.|.+-+.|.+..++.++..|.+|||| |||+++.++++..++..++.+.+                       
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-----------------------  118 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-----------------------  118 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            344667889999999999999999999999999 99999999999999999999887                       


Q ss_pred             hhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcc
Q 007736          143 GMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       143 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                       .++..+.++|++.|+..|-. +.+.++++|.+++++      |+.+++..+.+..+|..+||.++|++.+
T Consensus       119 -~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 -RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence             57767777799999999876 577899999999999      9999999999999999999999999987

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.73  E-value=6e-16  Score=173.98  Aligned_cols=179  Identities=11%  Similarity=0.158  Sum_probs=137.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      ..++-+...+....+.+..+.++.....+.+.++++++.++.|++.+.+.+++.++.++.|+++||+ ||||.+.++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence            3344444444445555556667777777788899999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHHHhhcCC----------------CCCCCCCCCCC---------Ccccccc--hhHHHHHHHHHHHHHhccc
Q 007736          109 QAAGVTILTISTIIPS----------------LRPPKCNLNHG---------QSCIQAS--GMQLVVLYIALYLTALGTG  161 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~----------------~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~l~g~g~g  161 (591)
                      ++++.+++++...+..                .....|..++.         ..|....  ......++++|+++|+|.+
T Consensus       108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~  187 (633)
T TIGR00805       108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT  187 (633)
T ss_pred             HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence            9999999887521100                00112211110         1121111  1245677899999999999


Q ss_pred             cccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc
Q 007736          162 GLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~  214 (591)
                      ...+...+++.|++|+++      |+.++++++.+..+|..+|+++++++.+.
T Consensus       188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            999999999999999999      99999999999999999999999988754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=167.74  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=125.8

Q ss_pred             hhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccc
Q 007736           61 GTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQ  140 (591)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (591)
                      +..+.+.....+..+++.++..+++++.|+++||+ |||+++++++++.+++.++.+++                     
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a---------------------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA---------------------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            45667888888999999999999999999999996 99999999999999999999988                     


Q ss_pred             cchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchh
Q 007736          141 ASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWG  220 (591)
Q Consensus       141 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~  220 (591)
                         +++..+++.|++.|++.++...+...+++|+++++.      |+.+..+ ......++.++|.+++++..  +||+.
T Consensus       169 ---~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  169 ---PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             ---CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence               699999999999999999999999999999999999      9999999 77777888889999998887  89999


Q ss_pred             HHHHHHHHHHHHHH
Q 007736          221 YGICACAIVFGLVV  234 (591)
Q Consensus       221 f~~~~~~~~~~~~~  234 (591)
                      +++..+..++.++.
T Consensus       237 ~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  237 FWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99887765554444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.73  E-value=1.2e-15  Score=162.26  Aligned_cols=176  Identities=14%  Similarity=0.034  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHHHHHHHHhhh-HHHhhhhchhHHHHHHHHHHH-
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANT--VTNFLGTSFMLCLLG-GFIADTFLGRYLTIAIFATVQ-  109 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~-G~laD~~~Grk~~~~~~~~~~-  109 (591)
                      ...++..++.+...+....+.+|.|+++ .|.|.+++|..  .+.+....++..++. ++.+||+ ||||..++.+.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            4566778888999988889999999974 69999999997  466677787777777 6689997 9999976665332 


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      ++....++..  .+.                 . .....++....+.++..+...+...++..|..++++      ++.+
T Consensus        81 ~~~~~~~~~~--~~~-----------------~-~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~  134 (390)
T TIGR02718        81 SACLASLALV--GPD-----------------V-AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKG  134 (390)
T ss_pred             HHHHHHHHcC--Ccc-----------------h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHH
Confidence            2122222211  010                 0 112233334444556666666666777777777766      7777


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      .+....+..+|..+|+.+.+++.+.+||+..|++.++..++..+..+.
T Consensus       135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888999999988889999999999999888766555444333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.73  E-value=5.4e-15  Score=157.08  Aligned_cols=353  Identities=14%  Similarity=0.063  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 007736           37 ILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTIL  116 (591)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~  116 (591)
                      +....++....+-...++++.|+++ .|+|..|+|.+.+...+...+++++.|+++||+..+||.+.+..++.++...+.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4445555555666677899999975 789999999999999999999999999999998457888877666666655444


Q ss_pred             HHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHH
Q 007736          117 TISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF  196 (591)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  196 (591)
                      ...                        .+.+.+++..++..+......|...++..+...+        +..-+|-....
T Consensus        86 ~~~------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlw  133 (400)
T PF03825_consen   86 AFS------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLW  133 (400)
T ss_pred             HHh------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhh
Confidence            443                        3566666666667777777777777777776552        33334444455


Q ss_pred             Hhhchhhhhhh-hhhhccccc---cchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCC
Q 007736          197 ISIGSLAAVTV-LVYIQDNLG---REWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPS  272 (591)
Q Consensus       197 ~~ig~~~~p~i-~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (591)
                      +.+|.+++... ++.+....+   ....+++.+...++.. .+.+..++.+.++..+++.+                   
T Consensus       134 GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~lp~~~~~~~~~~~~~-------------------  193 (400)
T PF03825_consen  134 GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALFLPKTPPKRSAKESVK-------------------  193 (400)
T ss_pred             hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHhCCCCccccccCCCcc-------------------
Confidence            55666655333 222322222   2234444443322221 12222333221110000000                   


Q ss_pred             CCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 007736          273 DPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIF  352 (591)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (591)
                                             ..   ...+.                   +++.     ++.+.....+..++.....
T Consensus       194 -----------------------~~---~~~~~-------------------~~ll-----k~~~~~~Fll~~~l~~~~~  223 (400)
T PF03825_consen  194 -----------------------KL---LGLDA-------------------LKLL-----KNPRFLVFLLAAFLIGISH  223 (400)
T ss_pred             -----------------------cc---cchHH-------------------HHHh-----cCccHHHHHHHHHHHHHHH
Confidence                                   00   00000                   0000     1111111122222222222


Q ss_pred             HHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHH
Q 007736          353 WTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIF  432 (591)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~  432 (591)
                      ...++..+.+..... .....      ..+...++..+.-+..-    .+..|+.+|       .+..+.+.++.+..++
T Consensus       224 ~~~~~f~~~yl~~~g-g~~~~------~~g~~~~l~~~aEi~~f----~~~~~~~~r-------~g~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  224 AAYYTFFSIYLQELG-GYSGS------TIGILWALGVVAEIPFF----FFSGRFLKR-------FGIKWLLLLALVAYAV  285 (400)
T ss_pred             HHHHHHHHHHHHHcc-cchhh------HHHHHHHHHHHHHHHHH----HHHHHHHHh-------cCHHHHHHHHHHHHHH
Confidence            222222222211110 00000      01111111111111222    222333355       5566778889999988


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCccch--hhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHH-
Q 007736          433 AMVAAALCEIKRLRAARSHGLTNDPTAEIPLS--VFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLST-  509 (591)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~-  509 (591)
                      -..+++...                   .+..  +........+.|+.+++...+...++.+.+|++.|++++|+++.. 
T Consensus       286 R~~l~a~~~-------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~  346 (400)
T PF03825_consen  286 RWLLYAYFS-------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALS  346 (400)
T ss_pred             HHHHHHHhc-------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence            888887752                   0111  111222345799999999999999999999999999999999865 


Q ss_pred             HHHHHHHHHHHHHHhhcccC
Q 007736          510 LSLGFFVSSLLVSLVHKVTG  529 (591)
Q Consensus       510 ~~lg~~lg~~l~~~i~~~~~  529 (591)
                      .++|..+|+.++|++.+..+
T Consensus       347 ~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  347 FGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhc
Confidence            68999999999999987654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.72  E-value=2.6e-15  Score=163.52  Aligned_cols=379  Identities=14%  Similarity=0.110  Sum_probs=215.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch-----hHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG-----RYLTIAIFAT  107 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----rk~~~~~~~~  107 (591)
                      ....+...++.+.+. +.+...++.++++++|+++++++...+...+...+-.+ +|.++||+ +     ||+.+.++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence            445555578888888 88888889999999999999999888888888777555 99999998 7     6777777765


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.. ...+..++.. +                    .......+.+++.+++.+.......++..|..+ ++++   .++
T Consensus       104 l~~-~~~~~~l~~~-~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~  157 (468)
T TIGR00788       104 LGS-AILYGLLPGK-V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGP  157 (468)
T ss_pred             HHH-HHHHHhcccc-c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCC
Confidence            542 1222222200 0                    233334446788899999988999999999998 4411   134


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceee-ccCCCChhhHHHHHHHHHHhhc
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRF-KKLVGSPLTQIASVFVVAWRKR  266 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  266 (591)
                      ...++.+.+.++|..+++.++|.+.+.++|+..|++.+...++..+.. ...+|.++ ..++......            
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~-~~~~E~~~~~~~~~~~~~~------------  224 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVS-NLSKERRAFVRPRIGTYLE------------  224 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-Hhcccccccccccccccch------------
Confidence            455555566679999999999999999999999988876655553322 32333210 1111000000            


Q ss_pred             ccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHH
Q 007736          267 HLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIW  346 (591)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (591)
                                .+.                ........+.....           .+.-|+      ....+.+...   .
T Consensus       225 ----------~~~----------------~~~~~~~~~~~~~~-----------~~~l~~------~l~~~~i~~~---l  258 (468)
T TIGR00788       225 ----------MNM----------------ALLTLGVLANVKVQ-----------ILGLRG------AIQLLEIAKP---L  258 (468)
T ss_pred             ----------hhh----------------hhhhhhHHHHHHHH-----------HHHHHH------HHhcHHHHHH---H
Confidence                      000                00000000000000           000000      0001111111   1


Q ss_pred             HHHHHHHHHhcccc-ceeeeeecccccccccccccccc---ccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhH
Q 007736          347 ATTIIFWTVYAQMT-TFSVSQATTMNRHIGSFEIPGAS---LTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQR  422 (591)
Q Consensus       347 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~  422 (591)
                      .+..+.+....... +.+.....    .+   +.++..   ......+..+++..+.+++    .+|       .+.++.
T Consensus       259 ~fifl~~~~~~~~~~~~f~~~~~----~l---G~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~-------~~~r~~  320 (468)
T TIGR00788       259 IFIFLSYANLPGASGSVFCATTQ----CL---PGGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT-------FPYRLL  320 (468)
T ss_pred             HHHHHHHhhcCCCCceeEEEEcc----cC---CCCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh-------CCHHHH
Confidence            11111022212222 22222111    11   222222   2222233333333343333    344       345566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHH
Q 007736          423 IGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMS  502 (591)
Q Consensus       423 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~  502 (591)
                      +.++.++.+++.+....... +...  ..|         ..+.+++....++.+++.++...+...++.+.+|++.+|+.
T Consensus       321 l~~~~~l~~~~~~~~~~l~~-~~~~--~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~  388 (468)
T TIGR00788       321 FGVTTLLYTLSSLFDLILVK-RWNL--AFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSV  388 (468)
T ss_pred             HHHHHHHHHHHHhCceeeee-cccc--ccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehH
Confidence            77777777776544322110 0000  000         01223444556778888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccC
Q 007736          503 TGLFLSTLSLGFFVSSLLVSLVHKVTG  529 (591)
Q Consensus       503 ~gl~~~~~~lg~~lg~~l~~~i~~~~~  529 (591)
                      .|+.+...++|..+++.+++.+.+..|
T Consensus       389 ~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       389 FALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999998886553

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.72  E-value=3.8e-16  Score=168.42  Aligned_cols=357  Identities=15%  Similarity=0.143  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhh----hhchhHHH-HHHHHHHHHHHHHH
Q 007736           41 EACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIAD----TFLGRYLT-IAIFATVQAAGVTI  115 (591)
Q Consensus        41 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Grk~~-~~~~~~~~~i~~~l  115 (591)
                      .+..++.+.....+++.|+++.+|+++...+.+.....+..++..|+.|+++|    |+ ||||- ++++....+++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            35556666667778899999999999999999999999999999999999999    66 87664 44677777777777


Q ss_pred             HHHHhhcC-CCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736          116 LTISTIIP-SLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF  194 (591)
Q Consensus       116 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (591)
                      +....  | ..+               .......+.+..++..++......+..++.+|..++++.     |.+..++..
T Consensus        89 lf~~~--p~~~~---------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~  146 (428)
T PF13347_consen   89 LFSPP--PAGLS---------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRM  146 (428)
T ss_pred             hhccc--cchhh---------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHH
Confidence            76430  1 000               001334456666677888889889999999999985432     999999988


Q ss_pred             HHHhhchhhhhhhhhhhcccc-------ccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcc
Q 007736          195 FFISIGSLAAVTVLVYIQDNL-------GREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRH  267 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (591)
                      .+..+|..++..+.+.+.+..       +|++...+.+++.++..++.+...+|.+.+.+++++.               
T Consensus       147 ~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~---------------  211 (428)
T PF13347_consen  147 IFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK---------------  211 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc---------------
Confidence            888888876666666555332       4666666665555554444444434311111100000               


Q ss_pred             cCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHH
Q 007736          268 LDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWA  347 (591)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (591)
                                                      .+                   .+..++..     .+.|.+...+....
T Consensus       212 --------------------------------~~-------------------~~~~~~~~-----~~nr~~~~l~~~~~  235 (428)
T PF13347_consen  212 --------------------------------IS-------------------LRDSLRSL-----FRNRPFRILLLAFF  235 (428)
T ss_pred             --------------------------------cc-------------------cccchhhh-----cccchHHHHHHHHH
Confidence                                            00                   00000000     00111222222211


Q ss_pred             HHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHH
Q 007736          348 TTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGL  427 (591)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~  427 (591)
                      +....+...+....++.....+.+      + ..+.......+..++..++..++..|+++|           +.+..+.
T Consensus       236 ~~~~~~~~~~~~~~y~~~~vl~~~------~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~~  297 (428)
T PF13347_consen  236 LQWLAFALMNTFLPYYFTYVLGNE------G-LISIFMLIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIGL  297 (428)
T ss_pred             HHHhhhhhhhhHHHHHHHHHhcCc------h-hhHHHHHHHHHHHHHHHHHHHHHHHHccce-----------eehhhhH
Confidence            111111111111122221111111      0 112223344455566667776666444333           4578888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCc-------chhH
Q 007736          428 VLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPK-------GMKT  500 (591)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~-------~~rg  500 (591)
                      .+.+++.+++.+..                    +.+.+++.+..++.+++.+...+..+++..|..+.       +..|
T Consensus       298 ~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g  357 (428)
T PF13347_consen  298 LLAALGFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG  357 (428)
T ss_pred             HHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence            88888888877652                    24667777888999999999998889999998873       4469


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 007736          501 MSTGLFLSTLSLGFFVSSLLVSLVHKVTG  529 (591)
Q Consensus       501 ~~~gl~~~~~~lg~~lg~~l~~~i~~~~~  529 (591)
                      ...|++++...++..+++.+.+.+.+..|
T Consensus       358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  358 MYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999987654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.71  E-value=3.7e-15  Score=162.92  Aligned_cols=150  Identities=13%  Similarity=0.097  Sum_probs=123.0

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 007736           54 NLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLN  133 (591)
Q Consensus        54 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  133 (591)
                      ....++.+++|-+ ....|+.+...++..+..++.|.|+|.+ |||..++.+.++..+|.++++.+              
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA--------------  128 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA--------------  128 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC--------------
Confidence            4456888888865 5677888899999999999999999997 99999999999999999999987              


Q ss_pred             CCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcc
Q 007736          134 HGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                                ++...++.+..+.|+|.|... .....++|..|.+.      |..+..+......+....+|.++..+..
T Consensus       129 ----------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~  191 (599)
T PF06609_consen  129 ----------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAA  191 (599)
T ss_pred             ----------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence                      688899999999999977765 45566899999888      8877777666555666677777777776


Q ss_pred             ccccchhHHHHHHHHHHHHHHHH
Q 007736          214 NLGREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       214 ~~g~~~~f~~~~~~~~~~~~~~~  236 (591)
                      +.+|||.|++..+...++++..+
T Consensus       192 ~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  192 HSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHH
Confidence            77999999998877666654433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.9e-15  Score=152.83  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007736           48 TLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRP  127 (591)
Q Consensus        48 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~  127 (591)
                      .....-.+.+.+++.++++..+++++...+..+++++.++.|++.+|+ |+|+.+++++.++++++.+..=+..      
T Consensus        28 ~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~------  100 (422)
T COG0738          28 ITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS------  100 (422)
T ss_pred             HhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh------
Confidence            344556677888999999999999999999999999999999999998 9999999999999999988864422      


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhh
Q 007736          128 PKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTV  207 (591)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i  207 (591)
                                     ..++..++++.++.+.|.+......+++++.+.|++.      -.+-+++......+|+.++|.+
T Consensus       101 ---------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~  159 (422)
T COG0738         101 ---------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLL  159 (422)
T ss_pred             ---------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHH
Confidence                           1688899999999999999999999999999999877      5666777788889999999999


Q ss_pred             hhhhcc
Q 007736          208 LVYIQD  213 (591)
Q Consensus       208 ~~~l~~  213 (591)
                      ++++..
T Consensus       160 g~~lil  165 (422)
T COG0738         160 GSSLIL  165 (422)
T ss_pred             HHHHHH
Confidence            998876

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.71  E-value=7.9e-16  Score=162.10  Aligned_cols=141  Identities=7%  Similarity=-0.022  Sum_probs=129.4

Q ss_pred             HHHHHHHHhhhhcCCChHH-HHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 007736           51 IAVNLVTYLTGTMHLGNAS-AANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPK  129 (591)
Q Consensus        51 ~~~~l~~yl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  129 (591)
                      ..++..+|+.+++|++.++ .+.+.+.+..++.++.+++|+++||+ |.|+++.++.+...+..++++++          
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa----------  112 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG----------  112 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH----------
Confidence            3556677899999999999 99999999999999999999999997 99999999999999999999987          


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhh
Q 007736          130 CNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLV  209 (591)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~  209 (591)
                                    .++..+.+.|++.|++.|+.. +...++..++|+++      |+++.++.+.+..+|.++++++++
T Consensus       113 --------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       113 --------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          588899999999999999999 99999999999999      999999999999999999999999


Q ss_pred             hhccccccchhHHHH
Q 007736          210 YIQDNLGREWGYGIC  224 (591)
Q Consensus       210 ~l~~~~g~~~~f~~~  224 (591)
                      + ...+||+.-+.+.
T Consensus       172 l-l~s~gWr~y~~Ln  185 (511)
T TIGR00806       172 L-LVTLGWISYSTLN  185 (511)
T ss_pred             H-HHhcCchhHHHHH
Confidence            9 4567988765544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.69  E-value=1.9e-15  Score=158.40  Aligned_cols=394  Identities=9%  Similarity=0.014  Sum_probs=218.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      +++.|......++...++-...++.+.++++..|++.+++|.+.+...+...+.+++.|.++||+ |.||-+++.+.+..
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILL   84 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHH
Confidence            34566667777777777777889999999998999999999999999999999999999999997 87766554443332


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +.......-...|.+                    ..-+.++.++.++..+.......+.. |.+-++.++   +.+-=+
T Consensus        85 ~l~~pff~~v~~pll--------------------~~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~sr---~~~feY  140 (412)
T PF01306_consen   85 LLFGPFFIYVFGPLL--------------------QSNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERVSR---RNGFEY  140 (412)
T ss_dssp             HTCHHHHHHTHHHHH--------------------HTT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHHH---HHSS-H
T ss_pred             HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHHH---HhcCCc
Confidence            221111111000100                    00122233333333333332222222 332222221   123334


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCC
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL  270 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (591)
                      |-..+.+.+|.+++..++|.+.+ .+-+..||+.....++..++++..+++.+++.+..+.                   
T Consensus       141 G~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-------------------  200 (412)
T PF01306_consen  141 GRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-------------------  200 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-------------------
T ss_pred             chHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-------------------
Confidence            55677788999999999998876 3455677776654444433333333221111100000                   


Q ss_pred             CCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHH-
Q 007736          271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATT-  349 (591)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  349 (591)
                                   +      .   .+.+..+..+.                         .+..+.|+++....+.... 
T Consensus       201 -------------~------~---~~~~~~~~~~~-------------------------~~l~k~~~fw~~~l~v~g~~  233 (412)
T PF01306_consen  201 -------------L------G---AKKDKVSLKDV-------------------------LSLFKMRNFWFFVLFVIGVA  233 (412)
T ss_dssp             -------------S------S---S------HHHH-------------------------HHHTTSHHHHHHHHHHHHHH
T ss_pred             -------------c------c---cCCCCCcHHHH-------------------------HHHhcchhHHHHHHHHHHHH
Confidence                         0      0   00000000000                         0011123333333333333 


Q ss_pred             HHHHHHhccccceeeeeeccccccccccccccccccccchh---hhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHH
Q 007736          350 IIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVG---SILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVG  426 (591)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g  426 (591)
                      ..+..+.+|.+.++....   +..    +......+.++.+   .-.+...+..+++    +|       .++++.+.++
T Consensus       234 ~~Y~vfdqqf~~y~~~~f---~~~----~~g~~~~G~l~s~~v~~E~~~m~~~p~li----~r-------ig~k~~Llla  295 (412)
T PF01306_consen  234 AIYDVFDQQFPIYFASFF---QSA----GQGNQMYGYLWSVQVFLEALMMFFSPWLI----NR-------IGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTS---SSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------H-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---ccc----ccChhHHhHHHHHHHHHHHHHHHHHHHHH----Hh-------cChHhHHHHH
Confidence            344444445444333221   100    1111222222222   2222223333334    44       3444678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHH
Q 007736          427 LVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLF  506 (591)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~  506 (591)
                      ..++++-.+.+++.                      .+++++++.-.+.++-..+......-|+.+.+|++..++...+.
T Consensus       296 g~i~~iRi~~~~~~----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  296 GVIMAIRIIGSGFA----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             HHHHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence            88888888877764                      35667777889999999999999999999999999999999885


Q ss_pred             -HHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007736          507 -LSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYV  570 (591)
Q Consensus       507 -~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  570 (591)
                       ++..+++..+.+.+.|.+.|..|              .+..|++.+++.++..++..+..++.+
T Consensus       354 ~~~~~~~~~~i~s~~~G~lyd~~G--------------~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  354 FQFAKQIGIIILSPLAGYLYDRIG--------------FQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHHHhhhHHhhHhhcC--------------cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence             58889999999999999987543              445788888887777776666655433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.67  E-value=3.3e-15  Score=162.81  Aligned_cols=419  Identities=13%  Similarity=0.060  Sum_probs=250.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVN---LVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |.+.++.|+.+...+++..-   +-..++++++.+..+++|+.++......+..++.+.+.||+ |.|.+.+.|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            66777777777777766543   34566788999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHH-HHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIA-LYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      |.++.+++                        .+++.+++. -++.|+|.|..+.+...++..+|+++       |+.+.
T Consensus       124 g~~lssF~------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~  172 (509)
T KOG2504|consen  124 GLLLSSFA------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALAT  172 (509)
T ss_pred             HHHHHHHH------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHH
Confidence            99999998                        477777665 45568999999999888888777654       89999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCC
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL  270 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (591)
                      |+...+..+|..+-|.+.-++.+.+|||..+++.....+-.++.....++.....++. .. ++. +.       ... .
T Consensus       173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~-~~~-~~-------~~~-~  241 (509)
T KOG2504|consen  173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EE-KDL-RN-------SAA-S  241 (509)
T ss_pred             hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hh-hhh-cc-------ccc-c
Confidence            9988899999999999999999999999999887766554444444544432222222 00 000 00       000 0


Q ss_pred             CCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccccccccc------Cc--cchhHHHHHHHHH
Q 007736          271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNL------AT--LTDVEEVKMVIRM  342 (591)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~  342 (591)
                      .+......+....    .++..   +.+ ..........          .....|+.      ..  +.+...-+.++..
T Consensus       242 ~~~~~~~~~~~~~----~~~~~---~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~  303 (509)
T KOG2504|consen  242 VESTPKPVELRIS----ERDSG---LKK-LSLSNLATLK----------RGPDKWRNSPLQAFLSMLDLSLLKDPKFLLL  303 (509)
T ss_pred             ccccccccccccc----cCCCC---CCc-ccccchhhhh----------hCCccccccchhhhhhhhhHHHHcCchHHHH
Confidence            0000000000000    00000   000 0000000000          00111110      00  0000011111111


Q ss_pred             HHHH-HHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchh
Q 007736          343 LPIW-ATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQ  421 (591)
Q Consensus       343 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~  421 (591)
                      ..-. +..+.+...+...+.+..  ....+      .-..+.+.++..+...++.++.+++.++-.         .....
T Consensus       304 ~~~~~~~~~g~~~p~~~l~~~~~--~~g~~------~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~  366 (509)
T KOG2504|consen  304 ALSNLFAYLGFNVPFVYLPSYAK--SLGLS------SNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALV  366 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--hcCCC------hhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHH
Confidence            1111 111111111111111111  11111      112334444555555666666666664322         11223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHH
Q 007736          422 RIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTM  501 (591)
Q Consensus       422 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~  501 (591)
                      ...+++++++++.++....                      .+++.++...+++|+..+.........+.+.++.+.-..
T Consensus       367 ~~~~~ll~~gl~~~~~p~~----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~  424 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFA----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSN  424 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcch
Confidence            4555666666665444443                      245566667778888887777666667889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 007736          502 STGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFA  566 (591)
Q Consensus       502 ~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~  566 (591)
                      +.|+..+...++..+|+-+.|++.+..+             +++..|+..++..+++..+.++..
T Consensus       425 a~Gl~l~~~gi~~l~gpPiag~~~d~tg-------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  425 AYGLLLLFQGIGALVGPPIAGLLYDITG-------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHhHHHHHcCcccceeeeeccC-------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999998876542             244566667776666665444433

>PRK11462 putative transporter; Provisional

Probab=99.67  E-value=1.7e-14  Score=156.90  Aligned_cols=155  Identities=12%  Similarity=0.118  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh---chhHHHHH-HHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF---LGRYLTIA-IFATVQA  110 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~~~~-~~~~~~~  110 (591)
                      +.--++.+..+..+..+..++..|+++.+|+++..++.+..+.-+.-++.-|+.|+++||.   +||||-.+ ++.+..+
T Consensus        12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~   91 (460)
T PRK11462         12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG   91 (460)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence            3334556666777777788999999999999999999999999999999999999999972   48876554 5656777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++.+++...   |..+               .......+.+.-++..++......+..++.+|+.++.+.     |.+..
T Consensus        92 i~~~llf~~---p~~s---------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~  148 (460)
T PRK11462         92 IVCVLAYST---PDLS---------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQ  148 (460)
T ss_pred             HHHHHHHhC---CCCC---------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHH
Confidence            776665543   2111               012244455566666788888888889999999874332     99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQ  212 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~  212 (591)
                      ++...+.++|+.+++.+...+.
T Consensus       149 s~r~~~~~iG~~~~~~~~~plv  170 (460)
T PRK11462        149 SWRFVLATAGGMLSTVLMMPLV  170 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888877755443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.67  E-value=3.4e-14  Score=153.48  Aligned_cols=152  Identities=13%  Similarity=0.050  Sum_probs=127.5

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcc
Q 007736           59 LTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSC  138 (591)
Q Consensus        59 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (591)
                      +.++.++...+.+.+.+++.+++.++.+++|+|.||+ .-.+.+....++..+-.++.+..                   
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------  131 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------  131 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            3467788889999999999999999999999999998 86666666666555555444443                   


Q ss_pred             cccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhh------c
Q 007736          139 IQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYI------Q  212 (591)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l------~  212 (591)
                           ++.+.+++.|+++|+..++.+|....+++.++.+++      |+.-+++++.+..+|+++|.++...+      .
T Consensus       132 -----~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~  200 (495)
T KOG2533|consen  132 -----HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG  200 (495)
T ss_pred             -----hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence                 689999999999999999999999999999999999      99999999999999999999998875      3


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          213 DNLGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       213 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      ...||||.|++.+++.++..++.++..|.
T Consensus       201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  201 GLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             CcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            35689999999987766666555555554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=3.8e-14  Score=141.87  Aligned_cols=425  Identities=14%  Similarity=0.083  Sum_probs=237.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 007736           41 EACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTIST  120 (591)
Q Consensus        41 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~  120 (591)
                      ..............+..-+....+.+..+..++......+..+++...|.++|++ |||+...+...+..+...+-+.+ 
T Consensus        86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-  163 (528)
T KOG0253|consen   86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-  163 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-
Confidence            3444444555566666667777888888999999999999999999999999998 99999998877777766666554 


Q ss_pred             hcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhc
Q 007736          121 IIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIG  200 (591)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  200 (591)
                                             +++..+.+.|.+.++|.|+ .|...++-.|..|...      |....-.. ....+|
T Consensus       164 -----------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig  212 (528)
T KOG0253|consen  164 -----------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIG  212 (528)
T ss_pred             -----------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHH
Confidence                                   5888999999999999999 7888899999989887      77666555 566788


Q ss_pred             hhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCce-eeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCccc
Q 007736          201 SLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRY-RFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFN  279 (591)
Q Consensus       201 ~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (591)
                      .++...+.=.....+||||..........+..... +..++. +..-.++++.+. ...+....|--+.+.|-.......
T Consensus       213 ~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~-~w~~ESpRf~~~~G~~~kA-letL~kiArmNg~qlplgvl~~s~  290 (528)
T KOG0253|consen  213 QVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFL-VWVYESPRFYLAKGDDYKA-LETLHKIARMNGKQLPLGVLESSA  290 (528)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHH-hhcccCcchhhhcCChHHH-HHHHHHHHHhcCCCCCcceeeeeh
Confidence            88887777666778899998766664333332222 222222 222223333332 233444444444555433222222


Q ss_pred             ccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHH-HHHHHHHHhcc
Q 007736          280 IDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWA-TTIIFWTVYAQ  358 (591)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  358 (591)
                      +++.|++             .+-+|..+...+++.      ...--++..++  . +|+.+-....|+ ....+|...-.
T Consensus       291 ~~~~e~e-------------~~~~~~~~~~a~ke~------rg~~~nLlsp~--l-rkttlllw~iwfgnafsyyg~VLl  348 (528)
T KOG0253|consen  291 IDRQEQE-------------ESDLDDSKSSAAKEV------RGGTTNLLSPK--L-RKTTLLLWRIWFGNAFSYYGSVLL  348 (528)
T ss_pred             hhhhhhh-------------hhchhhhhhcccccc------ccchHhhcChH--H-HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            1111100             000111111100000      00001111111  1 222222222222 22222221111


Q ss_pred             ccceeee----------eecccccccc-ccccc----cccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHH
Q 007736          359 MTTFSVS----------QATTMNRHIG-SFEIP----GASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRI  423 (591)
Q Consensus       359 ~~~~~~~----------~~~~~~~~l~-~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i  423 (591)
                      ....++.          .....+.... .+...    ..++.+   +.-+-+..+..++++|++||           +.|
T Consensus       349 ttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllits---laefPGlLIt~~iverlGRK-----------kTM  414 (528)
T KOG0253|consen  349 TTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITS---LAEFPGLLITGVIVERLGRK-----------KTM  414 (528)
T ss_pred             HHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHH---HhhCCchhHHHHHHHHhcch-----------hHH
Confidence            1000000          0000010000 00000    000111   11111122344455555565           447


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHH
Q 007736          424 GVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMST  503 (591)
Q Consensus       424 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~  503 (591)
                      ...++++++..+....+.                      ......+..+..-......+.+.|.|..|++|...|+++.
T Consensus       415 al~l~~f~iflfll~~c~----------------------~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgv  472 (528)
T KOG0253|consen  415 ALSLILFGIFLFLLTTCK----------------------TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGV  472 (528)
T ss_pred             HHHHHHHHHHHHHHHHhc----------------------CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcch
Confidence            777777766665555442                      1111122233444444455677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007736          504 GLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDK  574 (591)
Q Consensus       504 gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~  574 (591)
                      |+-.....+|+++.|.+. ......               ....-.+.++.++++.+...++-.++|+|+.
T Consensus       473 GtcSsmaRIggI~~p~iA-~~~e~s---------------~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  473 GTCSSMARIGGIFSPVIA-MRAELS---------------TSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhhhhHHhhhhhhhhHHH-HHhccc---------------eeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999999999999999987 443221               1123456777778888777777778887753

>PTZ00207 hypothetical protein; Provisional

Probab=99.66  E-value=1.6e-13  Score=151.12  Aligned_cols=156  Identities=13%  Similarity=0.035  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007736           48 TLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRP  127 (591)
Q Consensus        48 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~  127 (591)
                      .|++. .....+++++|++..+.+++.++.. ...++.++.|+++||+ |||+++.++.+++.++.++++++..-     
T Consensus        43 ~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~-----  114 (591)
T PTZ00207         43 MYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE-----  114 (591)
T ss_pred             HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence            34433 4455678899999999999987644 3446777899999998 99999999999999999999886210     


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhh-hhh
Q 007736          128 PKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLA-AVT  206 (591)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~-~p~  206 (591)
                                   ....+.+.+++.|++.|+|.+...+.....+.++|| ++      |+++.++...+.++|+++ +++
T Consensus       115 -------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l  174 (591)
T PTZ00207        115 -------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSI  174 (591)
T ss_pred             -------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHH
Confidence                         001378889999999999999888888889999997 56      999999999999999975 555


Q ss_pred             hhhhhccccccchhHHHHHHHHHHHHH
Q 007736          207 VLVYIQDNLGREWGYGICACAIVFGLV  233 (591)
Q Consensus       207 i~~~l~~~~g~~~~f~~~~~~~~~~~~  233 (591)
                      ..+++.  .+|+..|++.++..++..+
T Consensus       175 ~~~l~~--~~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        175 QLAFFS--DNTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence            555554  3577677666654444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.66  E-value=2.2e-14  Score=144.37  Aligned_cols=346  Identities=16%  Similarity=0.177  Sum_probs=232.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      +..+.+..+=-+...-++- .+...+.+++|+|.++++.+.++..++..+.+++..+|+.|+ |.+|.+..++++.++|.
T Consensus        14 i~gIvlia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~   91 (395)
T COG2807          14 LAGIVLIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGI   91 (395)
T ss_pred             HHHHHHHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence            3333333333344433333 344567889999999999999999999999999999999997 99999999999999998


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      .+=...                         +...++.+-.+.|.|.+......++++-+.||++.       +..+++|
T Consensus        92 ~iR~~~-------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglY  139 (395)
T COG2807          92 LIRSLG-------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLY  139 (395)
T ss_pred             HHHhcc-------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHH
Confidence            887763                         66778888889999999999999999999999875       8899999


Q ss_pred             HHHHhhchhhhhhhhhhhcccc-ccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCC
Q 007736          194 FFFISIGSLAAVTVLVYIQDNL-GREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPS  272 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (591)
                      ....++|+.+++.+...+.++. ||+..+.+=++..+++++.++....+.+  .+..+..                    
T Consensus       140 s~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~--------------------  197 (395)
T COG2807         140 STSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIATK--------------------  197 (395)
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccc--------------------
Confidence            9999999999999999888877 7999987777766666666554422111  1100000                    


Q ss_pred             CCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 007736          273 DPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIF  352 (591)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (591)
                                                                   +++..+-|        ++...+...+..-.-..++
T Consensus       198 ---------------------------------------------~~~~~~vw--------~~~~aW~vtLfmGlqS~~~  224 (395)
T COG2807         198 ---------------------------------------------LVSVRKVW--------RSPLAWQVTLFMGLQSLLY  224 (395)
T ss_pred             ---------------------------------------------cccccccc--------cCchhHHHHHHHHhhHHHH
Confidence                                                         00011122        1222333344445667778


Q ss_pred             HHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHH
Q 007736          353 WTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIF  432 (591)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~  432 (591)
                      |+.+.+++.++..+.  ++.+      .++.+.++..+..+....+...+.    +|..+      .+........++.+
T Consensus       225 Y~~~~WLP~ili~~G--~sa~------~aG~llsl~~l~~~~~~ll~P~la----~R~~n------~r~~~~~~~~~~l~  286 (395)
T COG2807         225 YIVIGWLPAILIDRG--LSAA------EAGSLLSLMQLAQLPTALLIPLLA----RRSKN------QRPLVVLALLLMLV  286 (395)
T ss_pred             HHHHHHHHHHHHHcC--CCHH------HhhhHHHHHHHHHHHHHHHHHHHH----HHhcc------cchHHHHHHHHHHH
Confidence            888888888765542  2211      122222222222223332333333    33211      11334555566666


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCc-chhHHHHHHHHHHHH
Q 007736          433 AMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPK-GMKTMSTGLFLSTLS  511 (591)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~-~~rg~~~gl~~~~~~  511 (591)
                      +++-+.+..                   .+..++|    .+++|+|.+.++|....++....++ +..+.-+|+.+....
T Consensus       287 G~~G~~~~P-------------------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GY  343 (395)
T COG2807         287 GLVGLLLAP-------------------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGY  343 (395)
T ss_pred             HHHHHHHhh-------------------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhH
Confidence            666655532                   1223333    4788888888888877777776644 555777888888888


Q ss_pred             HHHHHHHHHHHHhhcccC
Q 007736          512 LGFFVSSLLVSLVHKVTG  529 (591)
Q Consensus       512 lg~~lg~~l~~~i~~~~~  529 (591)
                      +-..+||.++|+++|..|
T Consensus       344 llAa~GP~l~G~lhDa~g  361 (395)
T COG2807         344 LLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             HHHhhhhhhHhHHHHhcC
Confidence            888899999999998874

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1.3e-13  Score=145.86  Aligned_cols=375  Identities=13%  Similarity=0.117  Sum_probs=232.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh---chhHH-HHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF---LGRYL-TIAIFA  106 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~-~~~~~~  106 (591)
                      .+.-..--...+..+..+-.+..++..|.++.+|+++..+|.+..+.-+.=++.-|+.|.++||.   +||+| -++++.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            34445556667777788888899999999999999999999999999999999999999999984   36654 566677


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhcc
Q 007736          107 TVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQM  186 (591)
Q Consensus       107 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  186 (591)
                      +.+++...++..+.+   .+               ...+....++.-.+.+++......+..++.+++.++.+.     |
T Consensus        91 ip~~i~~~l~F~~p~---~~---------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R  147 (467)
T COG2211          91 IPFAIVAVLLFITPD---FS---------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----R  147 (467)
T ss_pred             HHHHHHHHHHHcCCC---cc---------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----H
Confidence            788888877776521   10               013555566777888899999999999999999864432     9


Q ss_pred             chhhhhhHHHHhhchhhhhhhhhhhccc-------cccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHH
Q 007736          187 TNFFNWFFFFISIGSLAAVTVLVYIQDN-------LGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVF  259 (591)
Q Consensus       187 ~~~~~~~~~~~~ig~~~~p~i~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (591)
                      .+..++-..+.++|..+...+.+.+...       .||+..-.+..+..++..++.++..+|...+....++        
T Consensus       148 ~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~--------  219 (467)
T COG2211         148 ASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT--------  219 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc--------
Confidence            9999999899999987776666555432       3455444433333333333333322221110000000        


Q ss_pred             HHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHH
Q 007736          260 VVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMV  339 (591)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (591)
                                                           +....+.+...                        .....|.+
T Consensus       220 -------------------------------------~~~~~~~~~~~------------------------~~~~Nrp~  238 (467)
T COG2211         220 -------------------------------------GVKLKLKDSFL------------------------LIFKNRPL  238 (467)
T ss_pred             -------------------------------------cccccHHHHHH------------------------HHHccchH
Confidence                                                 00000000000                        00112223


Q ss_pred             HHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCc
Q 007736          340 IRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTP  419 (591)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~  419 (591)
                      +..+...++..+..-..+....++.....+.+      +..+...........+++.++..++.    +|.+       +
T Consensus       239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~------~l~~~~~~~~~~~~~l~~~~~~p~L~----~~~g-------k  301 (467)
T COG2211         239 LLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDP------ELFAYLLLLASGAGLLIGLILWPRLV----KKFG-------K  301 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEEEcCCh------HHHHHHHHHHHHHHHHHHHHhHHHHH----HHhc-------h
Confidence            33333333333332332333334433322211      11122222222222333344454444    4432       2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCc---
Q 007736          420 LQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPK---  496 (591)
Q Consensus       420 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~---  496 (591)
                      ++...+|.++.+++.+.+.+.                    ...+.+.+++..++.++|.+...+..++++.|.+.-   
T Consensus       302 k~~~~~~~~~~~i~~~~~~f~--------------------~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~  361 (467)
T COG2211         302 KKLFLIGLLLLAVGYLLLYFT--------------------PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEW  361 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--------------------cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHH
Confidence            366888888888888888775                    223556666777888999999999889888887643   


Q ss_pred             ----chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 007736          497 ----GMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADN  538 (591)
Q Consensus       497 ----~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~  538 (591)
                          +..|...|.+.+++-+|..++..+.+++....    |+.++.
T Consensus       362 ~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~----Gyv~~~  403 (467)
T COG2211         362 KTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI----GYVPNV  403 (467)
T ss_pred             HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCc
Confidence                55688899999999999999999999998775    455543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=4.3e-14  Score=145.11  Aligned_cols=182  Identities=16%  Similarity=0.179  Sum_probs=147.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhc-hhHHHHHHHH-HH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFL-GRYLTIAIFA-TV  108 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-Grk~~~~~~~-~~  108 (591)
                      .+.+|.+.+.+++.....|++..|.|.|+.|..|+|..++++..+.|-+++..+++++||+|||++ |||....+.. +.
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999999999999976 6666554433 33


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      ..++.+....+   |                   ..+..+..+..+.+|+..-+....+-....|..|++.      -|+
T Consensus       331 i~~~~~~~w~~---~-------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGt  382 (448)
T COG2271         331 ITASLVLYWLA---P-------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGT  382 (448)
T ss_pred             HHHHHHHHHcC---C-------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccc
Confidence            33344444433   1                   1356677777777887776666666677889999998      899


Q ss_pred             hhhhhHHHHhh-chhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          189 FFNWFFFFISI-GSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       189 ~~~~~~~~~~i-g~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +.|+..++..+ |+.++....|++.|.+||...|++..++.+++.+.+....+
T Consensus       383 A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         383 ATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             hhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888 99999999999999999999999888777777666555443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.50  E-value=5.9e-14  Score=135.79  Aligned_cols=135  Identities=16%  Similarity=0.276  Sum_probs=114.6

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 007736           55 LVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNH  134 (591)
Q Consensus        55 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  134 (591)
                      +-.+...+.+++.++..++.+.|.+-..+.+.++|++.||.+|-|..-++-+.+..+|.++.+..-              
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg--------------  131 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG--------------  131 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch--------------
Confidence            344556667777788889999999999999999999999987988877777777888888777642              


Q ss_pred             CCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc
Q 007736          135 GQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~  214 (591)
                             ..+.++....+|++.|+|.-......+++..-+|..++      .+-++|++.....+|+.+-..+.+++.+.
T Consensus       132 -------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  132 -------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             -------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence                   22688899999999999999998999999999999999      99999999999999999888888888765


Q ss_pred             cc
Q 007736          215 LG  216 (591)
Q Consensus       215 ~g  216 (591)
                      .+
T Consensus       199 ~~  200 (459)
T KOG4686|consen  199 MG  200 (459)
T ss_pred             HH
Confidence            44

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.48  E-value=4.7e-13  Score=146.98  Aligned_cols=178  Identities=12%  Similarity=0.089  Sum_probs=129.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      +++.........++....+|++..++|.|+++.+|++..+..++.....++..++.++.|+++||+ |||+++.++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444444455667788999999999999988999988888888888889999999999999998 9999988877654


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .++...+..... .                    .+...+++++++.+++.+...+....++.|.+|++.      |+++
T Consensus       327 ~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~  379 (490)
T PRK10642        327 FVLAIPAFILIN-S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSA  379 (490)
T ss_pred             HHHHHHHHHHHh-C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHH
Confidence            443333222110 0                    245566777888877766666667788889999999      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVF  235 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  235 (591)
                      .++.+....+++.++|.+.+++.+..+ |+.++++..+..+++++..
T Consensus       380 ~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        380 LAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            998444456677889999999887654 6666555444444444433

>PRK09952 shikimate transporter; Provisional

Probab=99.48  E-value=6.1e-13  Score=143.93  Aligned_cols=182  Identities=12%  Similarity=0.017  Sum_probs=131.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      ++++.........++....+|....+++.|+++.+|++......+.........++.++.|+++||+ ||||++..+.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            3444444444566777888999999999999999999987766666666777888999999999997 999998888766


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++...+.......                    .+...+.+..++.+++.+...+..+++++|.+|.+.      |++
T Consensus       326 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t  379 (438)
T PRK09952        326 GTLSAFPFFMALEAQ--------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS  379 (438)
T ss_pred             HHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence            555444333321000                    133334445556677777777788899999999988      999


Q ss_pred             hhhh-hHHHHhhchhhhhhhhhhhcccc--ccchhHHHHHHHHHHHHHHHHh
Q 007736          189 FFNW-FFFFISIGSLAAVTVLVYIQDNL--GREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       189 ~~~~-~~~~~~ig~~~~p~i~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      +.++ ++.+..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+.
T Consensus       380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999 55556689999999999998744  4777777766666666555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.47  E-value=4.4e-13  Score=146.25  Aligned_cols=177  Identities=13%  Similarity=0.021  Sum_probs=135.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.+|...+..++....+++...|+|.|+++.+|++..+.++..+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4678888888888888999999999999999999999999999999999999999999999998 999887665544443


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +..+......                      .+.....+.+++.|++..+..........|.+|++.      |+++.|
T Consensus       337 ~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~g  388 (467)
T PRK09556        337 IFTLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANG  388 (467)
T ss_pred             HHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHH
Confidence            3322222210                      234445566666665443333333356669999998      999999


Q ss_pred             hhHHHHhh-chhhhhhhhhhhcc------------ccccchhHHHHHHHHHHHHHHHHh
Q 007736          192 WFFFFISI-GSLAAVTVLVYIQD------------NLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       192 ~~~~~~~i-g~~~~p~i~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      +.+...++ |+.++|.+.|++.+            ..||+..|++..++.+++.+..+.
T Consensus       389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            99999886 77999999999999            578999998887776666555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.46  E-value=1.8e-12  Score=138.28  Aligned_cols=176  Identities=13%  Similarity=0.083  Sum_probs=132.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      +++..+..+...++....++....++|.|+++++|++..+.+.+.+...++..++.++.|+++||+ |||+.+..+....
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            334444444444555556666677899999999999999999888887788888999999999998 9999887776555


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .+........                        .+...+.+.+++.+++.+...+....+..|.+|+ +      |+++
T Consensus       293 ~~~~~~~~~~------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~  341 (393)
T PRK15011        293 VCFYAGMLMA------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA  341 (393)
T ss_pred             HHHHHHHHHH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence            5443333322                        3455556677777766666556666777888874 5      7899


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      .++++...++|..++|.++|.+.+.+||+..|++..+..+++++..+.
T Consensus       342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999888899999999999999999999999998877766666555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.45  E-value=3.7e-11  Score=130.35  Aligned_cols=84  Identities=19%  Similarity=0.215  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHH
Q 007736          468 LVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDF  547 (591)
Q Consensus       468 li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~  547 (591)
                      +.+.-++.|+..+..++..-++..+..|++..+...|++.++....+++||++.+.+.+.++             +....
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-------------~~r~g  449 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-------------SQRYG  449 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------CchhH
Confidence            34445688889999999999999999999999999999999999999999999999987653             22334


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007736          548 YWLLAILSALNFVIYLA  564 (591)
Q Consensus       548 f~~~~~~~~v~~~~~~~  564 (591)
                      +..+.++.+++.++++.
T Consensus       450 ~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  450 FLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            66667777777665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.42  E-value=3.6e-11  Score=124.51  Aligned_cols=391  Identities=10%  Similarity=0.022  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007736           48 TLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRP  127 (591)
Q Consensus        48 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~  127 (591)
                      -|.-......|..+.++ +....-|..-+|.+.+.....++-|+.||+ |-|.+..++....++|..+=.++. .|.+++
T Consensus        60 qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~  136 (480)
T KOG2563|consen   60 QWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPP  136 (480)
T ss_pred             hheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccccc
Confidence            34444455667777777 666677888889999999999999999997 999999999999999998877653 233322


Q ss_pred             CCCCCCCCCcccccchhHHH--HHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhh
Q 007736          128 PKCNLNHGQSCIQASGMQLV--VLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAV  205 (591)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p  205 (591)
                                       .++  ..+.+-.+.+...-.+......+.+.+|++++      |..+..+-.++..+|.+++.
T Consensus       137 -----------------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  137 -----------------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             -----------------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHh
Confidence                             333  66777777787777777777788888999999      99999998888888888887


Q ss_pred             hhhhhhcccc------ccchh--HHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCc
Q 007736          206 TVLVYIQDNL------GREWG--YGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMF  277 (591)
Q Consensus       206 ~i~~~l~~~~------g~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (591)
                      ++...+..+.      .|...  |+...++..+.+....+..++.++.||..+   +...                    
T Consensus       194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s---~~~~--------------------  250 (480)
T KOG2563|consen  194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS---QAAL--------------------  250 (480)
T ss_pred             hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh---Hhhh--------------------
Confidence            7776665443      34432  332222222222222333333222222111   0000                    


Q ss_pred             ccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 007736          278 FNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYA  357 (591)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (591)
                                        .  ..++....               +        +..++++.++.+...-.....++..++
T Consensus       251 ------------------~--~~~f~~si---------------~--------~~~~n~~F~il~~~ygi~~g~F~~l~~  287 (480)
T KOG2563|consen  251 ------------------Q--DASFPKSI---------------K--------SCFKNRQFIILAICYGIGLGLFNSLST  287 (480)
T ss_pred             ------------------h--cCcHHHHH---------------H--------HHHcCccHHHHHHHHhhhHHHHHHHHH
Confidence                              0  00000000               0        001122222222223333333444333


Q ss_pred             cccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHH
Q 007736          358 QMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAA  437 (591)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~  437 (591)
                      .+.......  +.+      +...+....+..+..+++..+.+.+.||..+        .+  ..+.+-.....++-.++
T Consensus       288 ~l~~~l~~s--gY~------~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~--------fk--~~~~v~~~~~~v~~~~l  349 (480)
T KOG2563|consen  288 LLNLALCPS--GYE------GVFAGYIGALMIVAGMLGALASGIIADKTKK--------FK--LTTLVLYLFALVGTLML  349 (480)
T ss_pred             Hhhhccccc--cCC------ccccchhHHHHHHHHHHHHHHHHhhhhhhhh--------HH--HHHHHHHHHHHHHHHHH
Confidence            332111111  111      1122333444444445555555555543321        11  11223333333332222


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHH
Q 007736          438 ALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVS  517 (591)
Q Consensus       438 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg  517 (591)
                      ..++.                  .....+++.....++|.......|...++..|..-|..-+++.|+.+...++-+++-
T Consensus       350 ~~~t~------------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~  411 (480)
T KOG2563|consen  350 LTCTL------------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL  411 (480)
T ss_pred             HHhhc------------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHH
Confidence            22210                  123344455566777777777789999999999988889999999998877777777


Q ss_pred             HHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 007736          518 SLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRL  576 (591)
Q Consensus       518 ~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~  576 (591)
                      .++.+...+..+     .++     +....-+.++..++++.++..++.+.+++...++
T Consensus       412 ~~~~~~~~~~~~-----~~~-----~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  412 VFIMGILAEDLG-----PPG-----NTFPANIFLTVSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             HHHHHHHhhccC-----CCC-----CCccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence            777776654322     111     0111223455666666666777777666655443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=1.3e-12  Score=137.77  Aligned_cols=169  Identities=20%  Similarity=0.068  Sum_probs=132.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      ++.++......++....++....++|.|+++.+|.+..+.+.+.....++..++.++.|+++||+ |||+.+.....+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~  296 (394)
T TIGR00883       218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAA  296 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            34467777777888888888899999999888999999999999999999999999999999998 99998876554444


Q ss_pred             HHHH-HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          111 AGVT-ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       111 i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +... +...... +                    .+...+.+..++.+++.+...+...+++.|.+|+++      |+++
T Consensus       297 ~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~  349 (394)
T TIGR00883       297 LLAVPLLMALLD-S--------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTG  349 (394)
T ss_pred             HHHHHHHHHHhc-C--------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeE
Confidence            3332 2211100 0                    244555666777888888888889999999999998      9999


Q ss_pred             hhh-hHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHH
Q 007736          190 FNW-FFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACA  227 (591)
Q Consensus       190 ~~~-~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~  227 (591)
                      .++ ++....+|..++|.++|++.++.| |+..++...++
T Consensus       350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            998 566677899999999999999888 87776655543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=2.2e-12  Score=135.27  Aligned_cols=170  Identities=13%  Similarity=0.107  Sum_probs=135.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +..+......++..........+.+.|. +++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++.++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV  282 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence            3455555555565555555666677775 56889998999999999999999999999999998 999999998888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +.+++.....                      .+...+....++.+++.+...+..++++.|.+|+++      |++..+
T Consensus       283 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g  334 (377)
T TIGR00890       283 GMAAMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYG  334 (377)
T ss_pred             HHHHHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhH
Confidence            8777665411                      122234455667788888777778889999999998      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFG  231 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~  231 (591)
                      +++...++|..++|.+.|.+.+..||++.|.+.+++.+++
T Consensus       335 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       335 FLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999998877655544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.41  E-value=1.5e-10  Score=119.61  Aligned_cols=345  Identities=16%  Similarity=0.193  Sum_probs=203.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch-----hHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 007736           60 TGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG-----RYL-TIAIFATVQAAGVTILTISTIIPSLRPPKCNLN  133 (591)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----rk~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  133 (591)
                      ..+++++..-.+...+...+... ..+..|+.||++ +     ||. -++.|..+++.+..+..++...-  ..      
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l--~~------   76 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL--AE------   76 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH--cc------
Confidence            45788888888888877776554 699999999997 6     443 44556667776666555543211  10      


Q ss_pred             CCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcc
Q 007736          134 HGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                      +++.-............++.++.|+|.+....+..++++|..|+++      |+++.++.+.+.-+|.+++..+.+.+.+
T Consensus        77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0011111111222334455666788888888888999999999999      9999999988999999999999998887


Q ss_pred             ccccchhHHHH----HHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCcccccc
Q 007736          214 NLGREWGYGIC----ACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKK  289 (591)
Q Consensus       214 ~~g~~~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (591)
                      .++-.-..-+.    .+..++.++..+-..++.+...+  .                                       
T Consensus       151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~--~---------------------------------------  189 (403)
T PF03209_consen  151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAA--A---------------------------------------  189 (403)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc--C---------------------------------------
Confidence            77633332222    12222222222221111111100  0                                       


Q ss_pred             ccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeecc
Q 007736          290 TKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATT  369 (591)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (591)
                           +++++.++.+.....                   ..+  ...+++  ...++.....+++....+-+|--.    
T Consensus       190 -----~~~~~~~f~~a~~~~-------------------~~~--~~a~~f--~~fl~l~t~a~~~QD~iLEPygg~----  237 (403)
T PF03209_consen  190 -----AERPRPPFREAWRQV-------------------WAS--PQARRF--FVFLFLGTLAFFMQDVILEPYGGE----  237 (403)
T ss_pred             -----CCCCCccHHHHHHHH-------------------HhC--CChhHH--HHHHHHHHHHHHhhHHHcCCchhH----
Confidence                 000001111110000                   000  011222  122233333333333222221111    


Q ss_pred             ccccccccccc---cccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007736          370 MNRHIGSFEIP---GASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLR  446 (591)
Q Consensus       370 ~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~  446 (591)
                          +  ++++   +..++..-..+.+++..+.++...   +|       .++.+...+|..++++++.+.....     
T Consensus       238 ----V--fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~-----  296 (403)
T PF03209_consen  238 ----V--FGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAG-----  296 (403)
T ss_pred             ----H--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHH-----
Confidence                0  1122   122344444555555555665553   22       2233445677777777777666542     


Q ss_pred             HhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007736          447 AARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHK  526 (591)
Q Consensus       447 ~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~  526 (591)
                                    ..-+.+.+.+..+++|++.++......+...+..+++..|..+|.+...+.++..++.++++.+.|
T Consensus       297 --------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  297 --------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             --------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          123466677888999999999998888999999999999999999999999999999999999987


Q ss_pred             cc
Q 007736          527 VT  528 (591)
Q Consensus       527 ~~  528 (591)
                      ..
T Consensus       363 ~~  364 (403)
T PF03209_consen  363 LV  364 (403)
T ss_pred             HH
Confidence            64

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.41  E-value=1.1e-12  Score=139.13  Aligned_cols=196  Identities=12%  Similarity=0.060  Sum_probs=150.7

Q ss_pred             cCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch
Q 007736           19 KGRPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTG-TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG   97 (591)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G   97 (591)
                      +..+.++..+.+||++++..+..++....+..+.+.+-+|+++ +.+.+.+..|++.+...++..++++..|+-+.|. |
T Consensus        21 ~~~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~   99 (488)
T KOG2325|consen   21 DSLSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-G   99 (488)
T ss_pred             CccccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-C
Confidence            3444556667899999999999999999998888889999875 4778888999999999999999999999999997 7


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCC
Q 007736           98 R-YLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFD  176 (591)
Q Consensus        98 r-k~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~  176 (591)
                      + |+-++.++++.++|.++-......|.                   ...+.++++|++.|+|.+.. ...-+|+++..-
T Consensus       100 ~~k~Pli~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~  159 (488)
T KOG2325|consen  100 SVKKPLIVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADAST  159 (488)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccC
Confidence            4 77777899999999888744433331                   37788999999999998875 466789999888


Q ss_pred             CCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhc----cc---------cccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          177 DSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQ----DN---------LGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~----~~---------~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      .++      |.++++....+..+|..+||.+...+.    ..         .-+..+-|+.++.-++.++++....+|
T Consensus       160 ~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  160 VED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             ccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            888      889988877777777777776654432    11         124455566666666666665555554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.38  E-value=2.8e-12  Score=137.89  Aligned_cols=181  Identities=11%  Similarity=-0.019  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--------hHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLG--------NASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAI  104 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~  104 (591)
                      .++..++..++..........+++.|+++ .|.+        ....+.+.+...+...++.++.|+++||+ |||+++.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~  286 (418)
T TIGR00889       209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLL  286 (418)
T ss_pred             CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH
Confidence            34455555666555555566777888764 4433        35678888889999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 007736          105 FATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERN  184 (591)
Q Consensus       105 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  184 (591)
                      +.++.+++..+.......                    ..+...+++.+++.|++.+...+....+++|.+|+++     
T Consensus       287 ~~~~~~v~~~l~~~~~~~--------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~-----  341 (418)
T TIGR00889       287 SLVAWALRFGFFAYGDPE--------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI-----  341 (418)
T ss_pred             HHHHHHHHHHHHHHcCcc--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence            999888877666653100                    0134566778889999988888888899999999998     


Q ss_pred             ccchhhhhhH-HHHhhchhhhhhhhhhhccc------cccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          185 QMTNFFNWFF-FFISIGSLAAVTVLVYIQDN------LGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       185 ~r~~~~~~~~-~~~~ig~~~~p~i~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                       |++++++.+ ....+|..+||.++|++.++      +||+.+|.+.+++.+++.+.+++..++
T Consensus       342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             999999986 56789999999999999887      469999988876666665555555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03699 putative transporter; Provisional

Probab=99.38  E-value=5.6e-12  Score=134.42  Aligned_cols=170  Identities=14%  Similarity=0.117  Sum_probs=134.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++...+..++.....+++..|+|.|+++.+|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+.....+.++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4566667777777778888999999999999999999999999999999999999999999998 999998877766666


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ...+....                        .+...+.+..++.|++.+...+...++..+..|++       +++..+
T Consensus       284 ~~~~~~~~------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g  332 (394)
T PRK03699        284 LMYLFVNT------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVN  332 (394)
T ss_pred             HHHHHHHc------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHH
Confidence            55444432                        23444455566778877777777777777766543       456678


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLV  233 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~  233 (591)
                      +...+.++|+.++|.+.|++.+..|++..+++.+++.+++.+
T Consensus       333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            888888999999999999999999999998877766555544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.38  E-value=9.3e-12  Score=131.09  Aligned_cols=170  Identities=15%  Similarity=0.093  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      .+......++..........++|.|+++++|.+..+.+++.+.......++.++.|+++||+ |||+++.++.++..+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY  279 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence            34344444444444555667789999889999999999888877777888899999999998 99999888776655544


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      ......                        .+.+.+.+.+++.+++.+...+....+..|..|+ +      ++++.+++
T Consensus       280 ~~~~~~------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~  328 (375)
T TIGR00899       280 TGLAAD------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLY  328 (375)
T ss_pred             HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHH
Confidence            443332                        3556666677888888887777777888888875 3      56999999


Q ss_pred             HHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          194 FFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      +...++|..++|.+.|.+.+..||+..|++.++..+++.+..
T Consensus       329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887666665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.38  E-value=6.2e-12  Score=134.33  Aligned_cols=171  Identities=13%  Similarity=0.001  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      .+.+....++.....+....++|.|+.+ .|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++....+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  299 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL  299 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            3444444555556777788889999875 799999999999999999999999999999997 99999888666665555


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      ++....                        .+...+.+..++.|++.++..+...++..|.+|+++      |+++.+++
T Consensus       300 ~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  349 (406)
T PRK11551        300 AALAAA------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAA  349 (406)
T ss_pred             HHHHhc------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHH
Confidence            544433                        244445556667777777777888899999999999      99999999


Q ss_pred             HHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHH
Q 007736          194 FFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  236 (591)
                      +....+|..++|.++|++.++.+ |...++....+.+++.+..+
T Consensus       350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988754 55555555544444444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.37  E-value=6.6e-12  Score=133.86  Aligned_cols=168  Identities=17%  Similarity=0.093  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 007736           40 GEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTIS  119 (591)
Q Consensus        40 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~  119 (591)
                      ...+...++.....+++.|+.+ .|.+  +.+...+.+.++..++.++.|+++||+ |||+.+..+..+.+++.++....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
T PRK05122        224 GLALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh
Confidence            3344556666777888888764 4553  445666778888899999999999997 99999998888888877766654


Q ss_pred             hhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhh
Q 007736          120 TIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISI  199 (591)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  199 (591)
                                              .+...+.+.+++.|++.+...+.......|.+|+++      |+++.++++...++
T Consensus       300 ------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~  349 (399)
T PRK05122        300 ------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDL  349 (399)
T ss_pred             ------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHH
Confidence                                    355566777888999998888777778889899888      99999999999999


Q ss_pred             chhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          200 GSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       200 g~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      |..++|.+.|.+.+..||+..|++.+++.+++.+..+...++
T Consensus       350 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        350 SLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999998877766666555544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.36  E-value=1.7e-11  Score=127.00  Aligned_cols=173  Identities=20%  Similarity=0.204  Sum_probs=150.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHH-HHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYL-TIAIFATVQA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~-~~~~~~~~~~  110 (591)
                      +.++...+..++..........+++.++.+.+|.+..+.+.+.+...++..++.++.|+++||+ |||+ .+.++..+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence            3445555566677777778888899999888899999999999999999999999999999998 9999 9999998888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++.++....                        .+...+.+..++.+++.+...+...+++.|.+|+++      |++.+
T Consensus       254 i~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  303 (352)
T cd06174         254 LGLLLLALA------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTAS  303 (352)
T ss_pred             HHHHHHHHh------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHH
Confidence            888877765                        356677888999999999999999999999999988      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      ++.+...++|..++|.+.+.+.+..+|+..+++..+..+++.+..
T Consensus       304 ~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         304 GLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998999999998887766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.35  E-value=2.1e-11  Score=130.06  Aligned_cols=177  Identities=14%  Similarity=-0.014  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +..|.+.+..++...+++++..++|.|+.+ +|.+..+.+...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345666667777788888999999999976 899999999999999999999999999999997 999999988877777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCC-CCChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFD-DSDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~  190 (591)
                      +..+....   |                    .+...+.  .++.|++.+...+.......+..+ +++      +++.+
T Consensus       283 ~~~~~~~~---~--------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~  331 (393)
T PRK09705        283 GFCGFIWL---P--------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLV  331 (393)
T ss_pred             HHHHHHHc---c--------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHH
Confidence            66654432   1                    1222221  234577777777777767777775 445      89999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      ++.+...++++.++|.+.|++.|..| |...|++.+++.+++.+..+...++
T Consensus       332 g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        332 AFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999886 7888888776666666655555554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.35  E-value=1.8e-11  Score=132.28  Aligned_cols=181  Identities=13%  Similarity=0.051  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch--hHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG--RYLTIAIFATVQ  109 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rk~~~~~~~~~~  109 (591)
                      +.+|.+.+..++....++++..++|.|+.+++|++..+.+...+.+.+++.++.+++|+++||+.+  |+..........
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            356777776777777778888999999988899999999999999999999999999999999622  222222221111


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .+........   +.                   .+.....+..++.|++............+|.+|+++      |+++
T Consensus       323 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  374 (434)
T PRK11663        323 LLSVGSLWLM---PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAA  374 (434)
T ss_pred             HHHHHHHHHc---cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhH
Confidence            1111111111   10                   122222233333343322222223456688898888      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      .++.+...++|+.++|.+.|++.++.||+..|++.+++.+++.+..+...+
T Consensus       375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998887776666554444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.34  E-value=1.2e-11  Score=134.36  Aligned_cols=177  Identities=14%  Similarity=0.115  Sum_probs=123.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhc-hhHHHH-HHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFL-GRYLTI-AIFATVQ  109 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-Grk~~~-~~~~~~~  109 (591)
                      +.+|...+..++.....++...++|.|+++..|++..+.+.+...+.++..++.+++|+++||+. |||+.. .....+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            45777778888888888899999999999989999999999888888999999999999999961 334322 2222333


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .++..+..+...                      .+.....+..++.|.+..........+..|.+|++.      |+++
T Consensus       333 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~  384 (452)
T PRK11273        333 TIATIVYWLNPA----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  384 (452)
T ss_pred             HHHHHHHHHhcc----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhH
Confidence            333332222100                      122333334444444332222233345679999998      9999


Q ss_pred             hhhhHHHHhhchhh-hhhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLA-AVTVLVYIQDNLGREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       190 ~~~~~~~~~ig~~~-~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  236 (591)
                      .++.+...++|+.+ +|.+.|++.++.||+..|++.....+++.+...
T Consensus       385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            99998888888665 799999999999999999887766666554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.34  E-value=4.6e-12  Score=136.22  Aligned_cols=172  Identities=12%  Similarity=0.053  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTM---HLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.+.+..++....+.....+++.|+.+.+   +.+..+.+.+.+...++..++.+++|+++||+ |||+.+.++.++.++
T Consensus       226 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~  304 (420)
T PRK09528        226 WFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAV  304 (420)
T ss_pred             EeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHH
Confidence            33333333444444445556777776543   56777889999999999999999999999998 999999998888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +..+..++                        .+.+.+.+.+++.+++.+...+....++.|.+|++.      +++..+
T Consensus       305 ~~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~  354 (420)
T PRK09528        305 RIIGSGFA------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYL  354 (420)
T ss_pred             HHHHHHhc------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeee
Confidence            87777664                        356667777888888887777777788999999888      888776


Q ss_pred             h-hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          192 W-FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       192 ~-~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      . ++...++|..++|.+.|++.+.+||+..|.+.+++.+++.++.+.
T Consensus       355 ~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        355 VGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            6 677888999999999999999999999999877665555544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.33  E-value=2.7e-11  Score=127.51  Aligned_cols=176  Identities=14%  Similarity=0.014  Sum_probs=130.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHH-HHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLT-IAIFATVQA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~-~~~~~~~~~  110 (591)
                      +.++...+..++..........++|.|+++.+|.+..+.+++.+...++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4677778888888889999999999999999999999999999999999999999999999997 88861 111111111


Q ss_pred             HHH---HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          111 AGV---TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       111 i~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      ++.   .+.......                    ..+.........+.+.+.+ ..+...++..|.+|+++      |+
T Consensus       294 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g  346 (399)
T TIGR00893       294 IAGLVLSLLMFATNY--------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AG  346 (399)
T ss_pred             HHHHHHHHHHHHhcc--------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HH
Confidence            211   111111000                    0122233333333334444 67888999999999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHH
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVF  235 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  235 (591)
                      ++.++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..
T Consensus       347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988 9999888776666555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.33  E-value=1.3e-11  Score=131.64  Aligned_cols=169  Identities=14%  Similarity=0.058  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCChH---HHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 007736           39 GGEACERLTTLGIAVNLVTYLTGTMHLGNA---SAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTI  115 (591)
Q Consensus        39 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l  115 (591)
                      ...++.......+.++++.|+.+..+....   ..+.+.+.+.++..++.++.|+++||+ |||+.+..+..+..++.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        226 VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHH
Confidence            333444455555667788888765432221   245555666778888999999999997 9999999888877776666


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHH
Q 007736          116 LTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFF  195 (591)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  195 (591)
                      ....                        .+.+.+.+.+++.|++.+...+...+.+.+..|++.      |++.+++++.
T Consensus       305 ~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  354 (408)
T PRK09874        305 MSFV------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS  354 (408)
T ss_pred             HHHh------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence            5543                        356667778889999999988888888888889888      9999999999


Q ss_pred             HHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhc
Q 007736          196 FISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSG  238 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  238 (591)
                      ..++|..+||.++|.+.+..||+..|++.+++.+++.+..+..
T Consensus       355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887776666555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=4.3e-11  Score=127.08  Aligned_cols=169  Identities=7%  Similarity=-0.029  Sum_probs=145.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++..++..++...++.....+.+.|+++ +|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            557777788888888888999999999965 899999999999988899999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ...+.++.                        ++.+.+++..++.|+..+...+....++.+. |+++      |+++.+
T Consensus       283 ~~~~~~~~------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~  331 (382)
T TIGR00902       283 RWAIIGAI------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQA  331 (382)
T ss_pred             HHHHHHhH------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHH
Confidence            98888765                        5778888889999999999999999999987 8877      899999


Q ss_pred             hhH-HHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          192 WFF-FFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       192 ~~~-~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      +++ ....+|..++|.++|++.|++|+ ..|.+.+...++++++
T Consensus       332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            976 46779999999999999999986 5566666655555433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.31  E-value=1.8e-11  Score=138.73  Aligned_cols=131  Identities=8%  Similarity=0.023  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHH
Q 007736           74 VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIAL  153 (591)
Q Consensus        74 ~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (591)
                      ..+..++..++.+++|+++||+ |||+++.++.++.+++.++.++.                        .+...+++.+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~------------------------~s~~~ll~~~  655 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG------------------------NSESAMIALL  655 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH------------------------ccHHHHHHHH
Confidence            4455688899999999999997 99999999999999888887765                        2444556667


Q ss_pred             HHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHH
Q 007736          154 YLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLV  233 (591)
Q Consensus       154 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~  233 (591)
                      ++.+++.++..+...++++|++|++.      |++++|+.+....+|++++|++++.+.+. +...+|++.+++.+++.+
T Consensus       656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l  728 (742)
T TIGR01299       656 CLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL  728 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            77777777778888999999999999      99999999999999999999999988764 455667766665555544


Q ss_pred             HHH
Q 007736          234 VFL  236 (591)
Q Consensus       234 ~~~  236 (591)
                      +.+
T Consensus       729 l~~  731 (742)
T TIGR01299       729 LAL  731 (742)
T ss_pred             HHH
Confidence            433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.31  E-value=1.5e-11  Score=132.13  Aligned_cols=176  Identities=10%  Similarity=-0.044  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      ++..++..++.. ...++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+..+.+++.
T Consensus       226 ~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~  303 (417)
T PRK10489        226 VGGIALLGGLLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAV  303 (417)
T ss_pred             HHHHHHHHHHHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHH
Confidence            344444444432 2456677889999888999999999999999999999999999999996 88888888877777776


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      ++....                        .+.....+..++.|++.+...+...+++.|.+|++.      |+++++++
T Consensus       304 ~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  353 (417)
T PRK10489        304 GLFGLM------------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLW  353 (417)
T ss_pred             HHHHcc------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHH
Confidence            666543                        355556667777888887776777788999999888      99999999


Q ss_pred             HHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          194 FFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      +...++|..+||.+.|++.+.+|++..+++.+++..+..++.....++
T Consensus       354 ~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        354 TAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999998888876665544444444443333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.30  E-value=3.7e-11  Score=123.81  Aligned_cols=186  Identities=15%  Similarity=0.044  Sum_probs=148.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .+..|.+.+.++..--++-++..++|.|+++++++++.+.+.+...+.+.+.+..+++|+||||+ |.+|+.++.....+
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999998 99998888888888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++..+.....+.         .+|        ..+........+.+++..|.-...+..++...+|++       -+...
T Consensus       296 ~~~~~l~~~~~~---------~~~--------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~  351 (417)
T COG2223         296 LAAALLSLFLTG---------FGH--------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVT  351 (417)
T ss_pred             HHHHHHHccccc---------ccc--------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHH
Confidence            887777765210         001        123444444444455555555556678888888774       58999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      |+.....++|+..-|...+...+..| +...|++.....+++.++.+....+
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988887 8888988887777777665554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.30  E-value=1.5e-11  Score=130.64  Aligned_cols=158  Identities=15%  Similarity=0.093  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 007736           36 MILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTI  115 (591)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l  115 (591)
                      .......+.+...+....++|.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++..+..+....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  320 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIP  320 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHH
Confidence            334444455566667778899999999999999999999999999999999999999997 9999988877655333222


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHH
Q 007736          116 LTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFF  195 (591)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  195 (591)
                      ....   .                    .+...+.+..++.++..++..+..++++.|.+|+++      |++++|+.+.
T Consensus       321 ~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~  371 (405)
T TIGR00891       321 VFAI---G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQ  371 (405)
T ss_pred             HHHh---C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHH
Confidence            2111   0                    244455555566666666667778889999999998      9999999999


Q ss_pred             HHhhchhhhhhhhhhhccccc-cchhHHH
Q 007736          196 FISIGSLAAVTVLVYIQDNLG-REWGYGI  223 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~~~~g-~~~~f~~  223 (591)
                      ..++|+.++|.+.|++.++.| |+..+..
T Consensus       372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       372 LGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            999999999999999999988 8766554

>PRK03545 putative arabinose transporter; Provisional

Probab=99.29  E-value=8e-11  Score=125.28  Aligned_cols=176  Identities=10%  Similarity=-0.058  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .++......++.....+....+++.|+.+.+|.+..+.+++.+...++..++.++.|+++||+ |||+.. .+..+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~  283 (390)
T PRK03545        206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVC  283 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHH
Confidence            344455555666666677778889999888999999999999999999999999999999997 987654 444444444


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      ..+.....                       .+...+.+..++.|++.+...+.....+.+..| +.      |+++.++
T Consensus       284 ~~~l~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~  333 (390)
T PRK03545        284 LLLLLPAA-----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMAL  333 (390)
T ss_pred             HHHHHHHh-----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHH
Confidence            43332211                       355666667777888877766667777777766 46      8999999


Q ss_pred             hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      ++...++|..+||.++|++.+++|++..|++.+.+.+++++..+...+
T Consensus       334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            998899999999999999999999999999888877777766655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.29  E-value=2.8e-11  Score=130.78  Aligned_cols=153  Identities=13%  Similarity=0.071  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHH-H
Q 007736           38 LGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTI-L  116 (591)
Q Consensus        38 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l-~  116 (591)
                      +...++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.+..+..+..+...+ .
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            4445556777888999999999988999999998888888899999999999999998 9999888765443322211 1


Q ss_pred             HHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh-HH
Q 007736          117 TISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF-FF  195 (591)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~  195 (591)
                      ......                     .+.....+..++.+++.+...+....++.|.+|++.      |++++++. ++
T Consensus       323 ~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~  375 (434)
T PRK15075        323 SWLVAA---------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSL  375 (434)
T ss_pred             HHHHcC---------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHH
Confidence            111000                     122223333444455555655666688899999999      99999995 44


Q ss_pred             HHhhchhhhhhhhhhhccccccc
Q 007736          196 FISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                      +..+++.++|.+.+++.++.|+.
T Consensus       376 ~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        376 ATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHhhhHHHHHHHHHHhcCCc
Confidence            44456888999999999988864

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=6.4e-11  Score=126.63  Aligned_cols=177  Identities=12%  Similarity=0.035  Sum_probs=131.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH-HHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA-IFATVQA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~-~~~~~~~  110 (591)
                      +.++...+..++...++++...++|.|++ ++|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+. .+.+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            45677777788888899999999999985 5899999999998899999999999999999997 9888764 3333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++...+......                   ...+.....+..++.|++.+...+ ..+...|.. +++      |+++.
T Consensus       300 ~~~~~l~~~~~~-------------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~------~g~~~  352 (402)
T TIGR00897       300 IFTLALYYIPQH-------------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKH------KGAAM  352 (402)
T ss_pred             HHHHHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cch------hHHHH
Confidence            333332221100                   002445555667777777766544 345566654 456      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      ++.+...++|..++|.+++.+.+.+||...|++.+++.+++.+..++
T Consensus       353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888776666554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.27  E-value=9e-12  Score=111.01  Aligned_cols=132  Identities=15%  Similarity=0.198  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHH
Q 007736           75 TNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALY  154 (591)
Q Consensus        75 ~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (591)
                      +.+.++..++.++.|+++||+ |||+.+..+..+..++.+++...                        .+...+.+.++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~   59 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS------------------------SNITVLIIARF   59 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh------------------------ccHHHHHHHHH
Confidence            445678889999999999997 99999999988888888777664                        36777788899


Q ss_pred             HHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          155 LTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       155 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      +.|++.+...+...+++.|.+|+++      |++..++.+....+|..++|.+.+.+.+..+|++.|++.....+++.+.
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        60 LQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             HHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            9999999988999999999999998      9999999999999999999999999999889999988877665555544


Q ss_pred             HHh
Q 007736          235 FLS  237 (591)
Q Consensus       235 ~~~  237 (591)
                      .+.
T Consensus       134 ~~~  136 (141)
T TIGR00880       134 LAF  136 (141)
T ss_pred             Hhh
Confidence            443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.26  E-value=6.8e-11  Score=129.85  Aligned_cols=149  Identities=15%  Similarity=0.125  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 007736           49 LGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPP  128 (591)
Q Consensus        49 ~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  128 (591)
                      +....++|.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..+..++......       
T Consensus       292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------  363 (496)
T PRK03893        292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------  363 (496)
T ss_pred             chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc-------
Confidence            34667899999889999999999999999999999999999999997 9999988877665555444332210       


Q ss_pred             CCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhh
Q 007736          129 KCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVL  208 (591)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~  208 (591)
                                     .+.+.+.+..++.+....+..+..++++.|.+|+++      |++.+++++...++|+.++|.++
T Consensus       364 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~  422 (496)
T PRK03893        364 ---------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILG  422 (496)
T ss_pred             ---------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHH
Confidence                           233333334444333333344566788899999988      99999999999999999999999


Q ss_pred             hhhccccccchhHHHHHH
Q 007736          209 VYIQDNLGREWGYGICAC  226 (591)
Q Consensus       209 ~~l~~~~g~~~~f~~~~~  226 (591)
                      |.+.+.+||+..+.+.+.
T Consensus       423 g~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        423 ALIAQRLDLGTALASLSF  440 (496)
T ss_pred             HHHhccCChHHHHHHHHH
Confidence            999999999888765543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=7.8e-11  Score=129.33  Aligned_cols=179  Identities=16%  Similarity=0.115  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHH-HHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVT-NFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      ..+.+....++.....+....+.++|+.+.+|++..+.+++.. ...++..++.+++|+++||+ ||||.+.++.++.++
T Consensus       223 ~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l  301 (491)
T PRK11010        223 NAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGV  301 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            3455555556666777777788899988889999999999874 55689999999999999998 999988776665555


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +.+........+                    .+...+.+..++..+..|...+...++..+..+++.      +++.++
T Consensus       302 ~~l~~~~l~~~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~g  355 (491)
T PRK11010        302 SNAGYWLLSITD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFA  355 (491)
T ss_pred             HHHHHHHHHhcc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHH
Confidence            443332211000                    133334444555444445445666788888999888      888999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhc
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSG  238 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  238 (591)
                      +.+...++|..+++.+.|++.+.+||+..|.+.+++.+++.+.....
T Consensus       356 l~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        356 LLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988887777776665544

>PRK12382 putative transporter; Provisional

Probab=99.26  E-value=4.7e-11  Score=127.04  Aligned_cols=164  Identities=17%  Similarity=0.151  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 007736           40 GEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTIS  119 (591)
Q Consensus        40 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~  119 (591)
                      ..++....+..+..+++.|+++ .|++.  .+.....+.++..++.++.|++.||+ ||||.+..+..+.+++..+....
T Consensus       224 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  299 (392)
T PRK12382        224 GLALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA  299 (392)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc
Confidence            3344455666677788888764 46553  45556667778889999999999997 99999999888888877766654


Q ss_pred             hhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhh
Q 007736          120 TIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISI  199 (591)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  199 (591)
                                              .+...+.+..++.|++.+...+...+...|.+|+++      |+++.++++...++
T Consensus       300 ------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~  349 (392)
T PRK12382        300 ------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDI  349 (392)
T ss_pred             ------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence                                    345566677888899888878888888899999888      99999999999999


Q ss_pred             chhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          200 GSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       200 g~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      |..++|.+.|++.++.||+..|.+.+.+.+++.+..+.
T Consensus       350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888777666655543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.26  E-value=1e-10  Score=126.28  Aligned_cols=176  Identities=14%  Similarity=0.068  Sum_probs=112.7

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEA-CERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        34 ~~~~~~~~~-~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .+...+..+ +....+|++..|+|.|+.+.+|.+..+.+...+...+...++.++.|+++||+ |||+.+.++..+.++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~  322 (432)
T PRK10406        244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALF  322 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            344443333 44778899999999999988999999999888888888889999999999997 9999887765544333


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      ...........                    .+....+....+..++.+...+....+.+|.+|++.      |+++.|+
T Consensus       323 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~  376 (432)
T PRK10406        323 TVPILSALQNV--------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGL  376 (432)
T ss_pred             HHHHHHHHHcC--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhH
Confidence            32221110000                    111211111122222233333456678899999999      9999999


Q ss_pred             hHHHHh-hchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHh
Q 007736          193 FFFFIS-IGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       193 ~~~~~~-ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      .+...+ +++...|.+.+++. ..| |...+++.++..+++.+..++
T Consensus       377 ~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        377 SYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            665544 44555788888664 445 555566555555555444443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.24  E-value=1.5e-10  Score=122.84  Aligned_cols=158  Identities=15%  Similarity=0.186  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007736           43 CERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII  122 (591)
Q Consensus        43 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~  122 (591)
                      +....+.....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+++..+..+..++.+... .   
T Consensus       211 ~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~---  284 (381)
T PRK03633        211 ISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S---  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h---
Confidence            3333444555678888865 699999999999999999999999999999998 999999888777776654432 1   


Q ss_pred             CCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchh
Q 007736          123 PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSL  202 (591)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  202 (591)
                                            . ......+.+.+++.+...|...+...|..|+++      ++...+.++...++|..
T Consensus       285 ----------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~  335 (381)
T PRK03633        285 ----------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSL  335 (381)
T ss_pred             ----------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHH
Confidence                                  1 112334566676666777888888899998877      77788888888999999


Q ss_pred             hhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          203 AAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       203 ~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      +||.++|++.|++||++.|.+.+.+.+++.+..
T Consensus       336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988776655544333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.23  E-value=1.4e-10  Score=125.63  Aligned_cols=177  Identities=14%  Similarity=0.088  Sum_probs=121.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.+|...+..++.....+++..++|.|+++..|++..+.++....+.+...++.+++|+++||+ |+++....+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            4566777777777778889999999999998999999999999999999999999999999997 754433333322222


Q ss_pred             H---HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          112 G---VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       112 ~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .   ...+...   +.                   .+........++.|++..+..........|.+|+++      |++
T Consensus       330 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  381 (438)
T TIGR00712       330 VTIAVIVYWMN---PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  381 (438)
T ss_pred             HHHHHHHHHhc---CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence            1   1111111   00                   122222333344444332222222345678999988      999


Q ss_pred             hhhhhHHHHhhch-hhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          189 FFNWFFFFISIGS-LAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       189 ~~~~~~~~~~ig~-~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      +.|+++...++|+ .++|.+.|.+.++.||...|++.+...+++.+..+.
T Consensus       382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            9999988888775 689999999999999999988776655555554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.19  E-value=2.4e-10  Score=124.34  Aligned_cols=172  Identities=11%  Similarity=0.016  Sum_probs=136.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh-chhHHHHHHHH--HH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF-LGRYLTIAIFA--TV  108 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~-~Grk~~~~~~~--~~  108 (591)
                      +.++..+...++...+++....+++.|+++ +|++..+.+.+.+...++..++.+++|+++||. .++|+...++.  ++
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            456777777778888888888899999864 799999999999999999999999999999983 14444444333  33


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++.+++...                        .+.+.+++.+++.|++.+...+...+++.|.+|+++      +++
T Consensus       320 ~~l~~ll~~~~------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~  369 (455)
T TIGR00892       320 NGLTHLLCALA------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSS  369 (455)
T ss_pred             HHHHHHHHHHh------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hhh
Confidence            33333333333                        366777788999999999988888999999999988      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhcccc-ccchhHHHHHHHHHHHHHH
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDNL-GREWGYGICACAIVFGLVV  234 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~  234 (591)
                      .+++++...++|..+||.++|.+.+.. +|+..|++.+++.+++.+.
T Consensus       370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999999999999999999999887 5999998887765555443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.19  E-value=6.6e-10  Score=114.53  Aligned_cols=80  Identities=16%  Similarity=0.002  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc---------
Q 007736          144 MQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN---------  214 (591)
Q Consensus       144 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~---------  214 (591)
                      .++..++++.+++|.|.+...+..++++++..|+++      +.+.+++...+..+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            588899999999999999999999999999999998      89999999999999999999999977632         


Q ss_pred             -------cccchhHHHHHHHHH
Q 007736          215 -------LGREWGYGICACAIV  229 (591)
Q Consensus       215 -------~g~~~~f~~~~~~~~  229 (591)
                             .+|+++|++.+.+..
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~  103 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALA  103 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Confidence                   368888885554433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.18  E-value=4.1e-10  Score=122.30  Aligned_cols=187  Identities=16%  Similarity=0.090  Sum_probs=153.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhH--HHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRY--LTIAIFAT  107 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk--~~~~~~~~  107 (591)
                      +.|.+...++..++.+-+...+......|.++++|++..+...+.....+...++++++|++.||+ |.|  +++++.++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            346777888888998999999999999999999999999999999999999999999999999997 988  88888777


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +..+..+...+... +.               ...-.+.+.+++.-++.|+..|..++..-++.+++.|+++      .+
T Consensus       358 ~~~~i~~~g~~G~~-~~---------------~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~  415 (477)
T PF11700_consen  358 LWIIIPLYGLFGFW-PS---------------FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EA  415 (477)
T ss_pred             HHHHHHHHHHHHhh-hc---------------ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hh
Confidence            66443333222100 00               0001467778888889999999999999999999999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcC
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGT  239 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  239 (591)
                      ..+|++.+..-..+.+||++.|.+.+..| .|..+....+..+++++++....
T Consensus       416 efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  416 EFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999886 88888877777777777665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.17  E-value=4.1e-10  Score=121.88  Aligned_cols=170  Identities=15%  Similarity=0.033  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 007736           50 GIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPK  129 (591)
Q Consensus        50 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  129 (591)
                      .+..+.+.+ .+++|++..+.++......++..++.+++|+++||+ |||+.+.++.++.+++.+++.+......     
T Consensus       302 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  374 (481)
T TIGR00879       302 AIMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-----  374 (481)
T ss_pred             ehHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence            334444444 457899988888888888999999999999999997 9999999988887777776663211000     


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhh
Q 007736          130 CNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLV  209 (591)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~  209 (591)
                          ++.    +...+...+....++.+....+..+....++.|.+|+++      |+++.++.+...++|++++|.+.+
T Consensus       375 ----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~  440 (481)
T TIGR00879       375 ----TGS----SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFP  440 (481)
T ss_pred             ----CCc----ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                000    000022222222222222222334666777899999998      999999999999999999999999


Q ss_pred             hhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          210 YIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       210 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      .+.++.+|++.|++.+++.+++.+..++..+
T Consensus       441 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       441 TMLESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence            9999889999988877666666555544444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.16  E-value=1.8e-10  Score=120.74  Aligned_cols=164  Identities=17%  Similarity=0.143  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++.+.+..++.......+..++|.|+.+.+|.+..+.+.+.+.+.++..++.++.|+++||..+||+...........
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45677777777778888888999999999999999999999999999999999999999999852344433322111111


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ...+.... ..+                   ..+.....+..++.|+...+..+....+..|.+|++.      |+++.+
T Consensus       296 ~~~~~~~~-~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g  349 (379)
T TIGR00881       296 IVSLLVYW-LNP-------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAG  349 (379)
T ss_pred             HHHHHHHh-cCc-------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHH
Confidence            11111111 000                   0234444455556666555555556678899999998      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGY  221 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f  221 (591)
                      +++...++|+.++|.+.|.+.+++||+..|
T Consensus       350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            999999999999999999999999998764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.15  E-value=1.2e-09  Score=119.07  Aligned_cols=177  Identities=13%  Similarity=-0.004  Sum_probs=122.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHH--------
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTI--------  102 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~--------  102 (591)
                      ++.+|...+..++....++.+..++|.|+.+.+|.+..+.++..+...++..++.+++|+++||+ ++|+..        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            45788888999999999999999999999999999999999999999999999999999999996 654211        


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhh
Q 007736          103 AIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE  182 (591)
Q Consensus       103 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  182 (591)
                      ..+......+..+...... .                    .+.....+...+.+.+.++..+.......|..|+ .   
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---  393 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPYL-S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHc-C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H---
Confidence            1111111111111111100 0                    1222333334444444444445555555566654 5   


Q ss_pred             hhccchhhhhhHHHHhhchhhhhhhhhhhcccc---ccchhHHHHHHHHHHHHHHHH
Q 007736          183 RNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNL---GREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       183 ~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~  236 (591)
                         ++...++.+...++|+.++|.+.|++.+..   +|...|.+.++..+++.++..
T Consensus       394 ---~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       394 ---LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence               899999999999999999999999987653   378888877766666655443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.15  E-value=7e-10  Score=114.32  Aligned_cols=163  Identities=11%  Similarity=0.054  Sum_probs=124.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGT--MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      .+.++..++..++....--++..|++.|+.+.  +|++..+.+...+.+..+..++.+++++++||+ |+||++.++..+
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence            34555555556665556667888999999854  799999999999999999999999999999997 999998888777


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++.++....                        +... ...+.++.|++.+..+|...+...+.+|++.       ++
T Consensus       218 ~~~~~~l~~~~------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~  265 (310)
T TIGR01272       218 AVLLSIGAALT------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQ  265 (310)
T ss_pred             HHHHHHHHHHc------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hh
Confidence            77666544432                        1111 1234557899999999999999989888654       33


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHH
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACA  227 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~  227 (591)
                      +.++. ....+|+.+.|.+.|.+.|..|.+.+|++..++
T Consensus       266 asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       266 GSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             hHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            33444 456799999999999999999988888765543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.14  E-value=4.9e-10  Score=120.27  Aligned_cols=165  Identities=12%  Similarity=-0.016  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHH-HHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTG-TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLT-IAIFATVQ  109 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~-~~~~~~~~  109 (591)
                      +.+|...+..++....++++..++|.|+++ ..+.+..+.+...+...++..++.+++|+++||+ |||+. +....++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            456777788888888999999999999976 3477888889999999999999999999999997 87664 33333333


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .++.++ ....                       .+.....++..+.++|.....+.......|.+|+++      |+++
T Consensus       321 ~~~~~~-~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a  370 (412)
T TIGR02332       321 AAGWLL-ASAT-----------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIA  370 (412)
T ss_pred             HHHHHH-HHhc-----------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHH
Confidence            333222 2110                       111111222223333333333344455567788888      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACA  227 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~  227 (591)
                      +++.+...++|++++|.+.|.+.+..| |++.|++.+++
T Consensus       371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999999875 99988766653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.14  E-value=1.6e-10  Score=120.65  Aligned_cols=155  Identities=11%  Similarity=0.075  Sum_probs=129.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIA-VNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      +.++......++....++... .+.|.|.++.+|.+..+.+.+.+...++..++.++.|++.||+ |||+.+..+..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            445666666666666666666 7788888877999999999999999999999999999999997 99999988877777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++..+.....                       .+.+.+.+..++.|++.+...+...+++.|.+|+++      |++..
T Consensus       289 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  339 (365)
T TIGR00900       289 LAILVVGLTP-----------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVF  339 (365)
T ss_pred             HHHHHHHhhc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            7666665541                       136667778888999999988899999999999988      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLG  216 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g  216 (591)
                      ++++...++|..++|.++|++.+.+|
T Consensus       340 ~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       340 GAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999987654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.3e-09  Score=113.54  Aligned_cols=178  Identities=13%  Similarity=0.069  Sum_probs=145.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .+.++..+...++...+.|...+++.+++++..|++....+++...|.++..++.+++|+++||  +.|+++.....+.+
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a  287 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA  287 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence            3468889999999999999999999999999999999999999999999999999999999999  68888888877777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +..+.+.+..                       .+.....+..++.|+...........-.++. -++.      +..+.
T Consensus       288 ~~~l~l~~~~-----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~-~p~~------~~~a~  337 (394)
T COG2814         288 LALLALTFTG-----------------------ASPALALALLFLWGFAFSPALQGLQTRLARL-APDA------ADLAG  337 (394)
T ss_pred             HHHHHHHHhc-----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhccc-CCCc------hHHHH
Confidence            7776666542                       3455555555556666665555555555552 2444      79999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +++....|+|..+|..++|.+.+++|+....++.++..+++.++.+...+
T Consensus       338 sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         338 SLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999888877776655443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.14  E-value=5.4e-10  Score=119.14  Aligned_cols=171  Identities=13%  Similarity=0.086  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTM---HLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .++...+..++....+.....+++.|+.+.+   +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence            3455555555555555556667888887665   45666778888888888999999999999997 9999999988888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++..+....                        .+...+.+..++.+++..........+..+..+++.      +++.
T Consensus       295 ~l~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~  344 (396)
T TIGR00882       295 SVRIIGSSFA------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATI  344 (396)
T ss_pred             HHHHHHHHhc------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEe
Confidence            8877665553                        356666777888888766555555566777777776      7777


Q ss_pred             hhh-hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          190 FNW-FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       190 ~~~-~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      .+. ++....+|+.++|.++|++.+..||+.+|.+.+++.++..+.
T Consensus       345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            766 678899999999999999999999999999887766555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.13  E-value=2.8e-09  Score=110.15  Aligned_cols=128  Identities=16%  Similarity=0.077  Sum_probs=91.3

Q ss_pred             HHHHHHHhhhhcCC---C----hHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHH-HHHHHHHHHHHHHHHHHHHhhcC
Q 007736           52 AVNLVTYLTGTMHL---G----NASAANTVTNFLGTSFMLCLLGGFIADTFLGRYL-TIAIFATVQAAGVTILTISTIIP  123 (591)
Q Consensus        52 ~~~l~~yl~~~~~~---~----~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~-~~~~~~~~~~i~~~l~~~~~~~~  123 (591)
                      ..++|.|+++..+.   +    .+..+...++..+..++..|+.|.++|.. |+|| .+-....+..+..+++.++..  
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~--  111 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP--  111 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence            45678888776543   2    24556667778888999999999999997 7555 555555566666667766521  


Q ss_pred             CCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhh
Q 007736          124 SLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLA  203 (591)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  203 (591)
                                         ........+..++..++..+......+++.|..++++      .++..++.+-...+|+.+
T Consensus       112 -------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i  166 (438)
T COG2270         112 -------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVI  166 (438)
T ss_pred             -------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchH
Confidence                               0245555666777888888888899999999999988      677666666667777776


Q ss_pred             hhhh
Q 007736          204 AVTV  207 (591)
Q Consensus       204 ~p~i  207 (591)
                      .-++
T Consensus       167 ~li~  170 (438)
T COG2270         167 LLIF  170 (438)
T ss_pred             HHHH
Confidence            6444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=1.1e-09  Score=116.39  Aligned_cols=167  Identities=7%  Similarity=-0.033  Sum_probs=131.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++...+..++....+.....+++.|+. +.|.+..+.+.+.+...++..+...+.|++.||+ |+|+.+.++.++.++
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            45666666677767777777788899986 5899999999999988889999999999999998 999999998888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +.++.+..                        ++.+.+++..++.|++.+...+....+..+. ++++      +++..+
T Consensus       283 ~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~  331 (382)
T PRK11128        283 RWGLMGST------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQA  331 (382)
T ss_pred             HHHHHHhh------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHH
Confidence            77766654                        4677778888899999888888878877775 5555      678888


Q ss_pred             hhH-HHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHH
Q 007736          192 WFF-FFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGL  232 (591)
Q Consensus       192 ~~~-~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~  232 (591)
                      +++ ....+|..+||.++|.+.|.+|+. .|+..+++.++++
T Consensus       332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        332 LYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            865 556678899999999999998874 5555554444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.13  E-value=5.1e-09  Score=112.91  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=116.4

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh--ch--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 007736           54 NLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF--LG--RYLTIAIFATVQAAGVTILTISTIIPSLRPPK  129 (591)
Q Consensus        54 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~--~G--rk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  129 (591)
                      -...|+++++|+++++.....+...+ -....++.|.++|.+  .|  ||+-++++.++..++.+.++..   |.     
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~-----   81 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PA-----   81 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---cc-----
Confidence            34567889999999998876655443 346788999999996  34  4555556666665555555543   21     


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhh
Q 007736          130 CNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLV  209 (591)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~  209 (591)
                                  ...+.....+..++..+|.+.......+...|...++...    |+...++.+....+|+.++..+.|
T Consensus        82 ------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G  145 (433)
T PF03092_consen   82 ------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSG  145 (433)
T ss_pred             ------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhh
Confidence                        1124555556667778899898899999999988655522    788888888899999999999999


Q ss_pred             hhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          210 YIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       210 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      .+.+..+++..|.+.+++..+..+..+...+
T Consensus       146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  146 PLLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            9999999999998887665555444333333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.12  E-value=9.4e-09  Score=104.90  Aligned_cols=154  Identities=14%  Similarity=0.134  Sum_probs=105.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccc
Q 007736           60 TGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCI  139 (591)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (591)
                      .+++|++..+++.+....+..+.+..++.|.++||+ |||+.-+..++++.++.+.--.                     
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~---------------------  118 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS---------------------  118 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc---------------------
Confidence            357999999999999999999999999999999998 9999999998888887764432                     


Q ss_pred             ccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH-HHHhhchhhhhhhhhhhccccc--
Q 007736          140 QASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF-FFISIGSLAAVTVLVYIQDNLG--  216 (591)
Q Consensus       140 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~~p~i~~~l~~~~g--  216 (591)
                          +++..++++|++.|+++....++.-+.....+.++..+. .-.+.-++... +.+.+-++.+..++-++.+..+  
T Consensus       119 ----~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g  193 (354)
T PF05631_consen  119 ----SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG  193 (354)
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence                488999999999999999998877665433332222110 00233333322 2222333444444445555554  


Q ss_pred             cchhHHHHHHHHHHHHHHHHhcCC
Q 007736          217 REWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       217 ~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      -..+|.....+.+++.+......+
T Consensus       194 ~vaPF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  194 PVAPFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             CcchHHHHHHHHHHHHHHHHhccc
Confidence            477888887776666665544444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.12  E-value=1e-09  Score=120.05  Aligned_cols=173  Identities=12%  Similarity=0.031  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHH-----HHH--HH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYL-----TIA--IF  105 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~-----~~~--~~  105 (591)
                      .+|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+     ...  +.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            456666666666666677788899999988999999999999999999999999999999997 8762     222  22


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736          106 ATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ  185 (591)
Q Consensus       106 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (591)
                      .++.++..++....                        .+.....+..++.+++.+...+...++..+..| +.      
T Consensus       332 ~~l~~i~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------  380 (476)
T PLN00028        332 QTLGGVFCIWLGRA------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------  380 (476)
T ss_pred             HHHHHHHHHHhccc------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence            22222222222111                        233333444445555544444555566666544 45      


Q ss_pred             cchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhc
Q 007736          186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSG  238 (591)
Q Consensus       186 r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  238 (591)
                      ++...++.+.+.++|+.++|.+.+ ..+..+|+..|++..++.+++.++.++.
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            899999987777777777766543 2234469999988877666666555444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.11  E-value=8.6e-10  Score=107.26  Aligned_cols=177  Identities=14%  Similarity=0.103  Sum_probs=139.9

Q ss_pred             CCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHH
Q 007736           21 RPAERSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYL  100 (591)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~  100 (591)
                      .|..+..+.....+|++.++.++...+.+=....-+.+.++++|+|+.+++.+.+.....+++.+++.|.++||+ ||+-
T Consensus       253 ~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~  331 (459)
T KOG4686|consen  253 EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNL  331 (459)
T ss_pred             CcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-ccee
Confidence            344445556677899999999888888777777788899999999999999999999999999999999999998 9987


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCC
Q 007736          101 TIAIFA-TVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSD  179 (591)
Q Consensus       101 ~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  179 (591)
                      ..+.+. +....+-..++++                          ...-+++..++|+.......+.++.++-..|+++
T Consensus       332 ~wv~~a~~~tl~~H~~l~Ft--------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q  385 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGLFFT--------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ  385 (459)
T ss_pred             hhHHHHHHHHHHHhhhHHhh--------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH
Confidence            766543 4455555666654                          2233566777888887777777888899999998


Q ss_pred             hhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccc---cchhHHHHHHHHHH
Q 007736          180 PQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLG---REWGYGICACAIVF  230 (591)
Q Consensus       180 ~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g---~~~~f~~~~~~~~~  230 (591)
                            .|++++..+...|+|-.+-|+++|.+.++-|   |--+|.+....+.+
T Consensus       386 ------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL  433 (459)
T KOG4686|consen  386 ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMAL  433 (459)
T ss_pred             ------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHH
Confidence                  9999999999999999999999999998765   44445544433333

>PRK10504 putative transporter; Provisional

Probab=99.10  E-value=1.1e-09  Score=119.61  Aligned_cols=158  Identities=11%  Similarity=0.063  Sum_probs=125.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++..+...++.+.++.....+.|.|++..+|.+..+.+++.....++..++.++.|+++||+ |||+++..+..+.++
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4556666777777777766667788888878999999999998888888888889999999998 999999988887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +..++.....                     ..+...+.+..++.|++.+...+....+..+.+|+++      ++.+++
T Consensus       340 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~  392 (471)
T PRK10504        340 VSLLFMLVAL---------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNS  392 (471)
T ss_pred             HHHHHHhccc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHH
Confidence            7666554310                     0233334445666778888878888889999999988      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhcccccc
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGR  217 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~  217 (591)
                      +.++...+|..+|+.++|.+.+..|+
T Consensus       393 ~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        393 LLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999988766654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.10  E-value=1.2e-08  Score=109.87  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=106.7

Q ss_pred             HHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHH
Q 007736           78 LGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTA  157 (591)
Q Consensus        78 ~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  157 (591)
                      .+...+.++..|.++||+ |||..+.+.++...+..+...+.                         . +.+++   +.+
T Consensus        72 ~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~-------------------------~-~~~~~---~~~  121 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ-------------------------G-YWFFL---LLG  121 (463)
T ss_pred             HHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH-------------------------H-HHHhh---hcc
Confidence            577889999999999998 99999999998888888777764                         2 22222   333


Q ss_pred             --hccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          158 --LGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       158 --~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                        -+.+...+...++++|....++      |...+++.+.....+..++|.+++++.+..|....|.+..+..++..+..
T Consensus       122 l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~  195 (463)
T KOG2816|consen  122 LSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYM  195 (463)
T ss_pred             cccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence              2444556788899999999998      99999999998999999999999999999999999999988887777766


Q ss_pred             HhcCCceeec
Q 007736          236 LSGTRRYRFK  245 (591)
Q Consensus       236 ~~~~~~~~~~  245 (591)
                      ....++...+
T Consensus       196 ~~~l~Esl~~  205 (463)
T KOG2816|consen  196 LLFLPESLQE  205 (463)
T ss_pred             hhccccccCc
Confidence            6666654433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.10  E-value=5e-10  Score=120.81  Aligned_cols=163  Identities=14%  Similarity=0.044  Sum_probs=124.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .|.++..++..++...+++....+.+.|.+..++ +..+.+++.....++..++.++.|+++||+ |||+++.++.++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~  298 (437)
T TIGR00792       221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMV  298 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            3456667777777777777766666666665565 456677777788899999999999999998 99999999988888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhccchh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ-ERNQMTNF  189 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~  189 (591)
                      ++.++..+..                       .+...+.+..++.+++.+...+..+++++|..|.++.+ ..+.++.+
T Consensus       299 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  355 (437)
T TIGR00792       299 LGYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLV  355 (437)
T ss_pred             HHHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence            7776665531                       24455666777788898888888899999987643211 01127889


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccc
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                      ++++++...+|..+++.+.|++.+..||.
T Consensus       356 ~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       356 YSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999998877764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.09  E-value=1.8e-09  Score=116.05  Aligned_cols=188  Identities=10%  Similarity=0.003  Sum_probs=132.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +..|.+.+.+++...++.++..++|.|+++.++  ............+...+..+++|+|+||+ |++|++.++.+..++
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            357999999999888888888899999988663  33333334445688899999999999997 999999998887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCC------------
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSD------------  179 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~------------  179 (591)
                      +........  |.                ....++..+.+..+.+.++.|.-..++..++.+.+|++.            
T Consensus       329 ~~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~  390 (462)
T PRK15034        329 FSALLFLTL--PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDE  390 (462)
T ss_pred             HHHHHHHHh--cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchh
Confidence            665443331  21                011355566666555556666666677778888787410            


Q ss_pred             ---hhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcCC
Q 007736          180 ---PQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       180 ---~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                         .+.+++-+...|+......+|+.+-|.+.|...+..| +...|+...+..+++.++-+....
T Consensus       391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence               1111236788888889999999999988887776654 888888887777776666555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.09  E-value=4.7e-09  Score=112.30  Aligned_cols=167  Identities=11%  Similarity=-0.072  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .++...+..++.....+....+.|.|+.+.+|++..+.+.......++..++.++.|+++||+ |+|+.+.++.++.+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            455555555566666666677788898888999999999888777788899999999999998 9999999988888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      ..+........                   ..+...+.++.++.++|.+...+......... ++++      |++..+.
T Consensus       295 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~  348 (406)
T PRK15402        295 LLLAALATVIS-------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA  348 (406)
T ss_pred             HHHHHHHHHcc-------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence            77776542100                   02455566777888888887766655554333 4466      9999999


Q ss_pred             hHHHHhhchhhhhhhhhhhccccccchhHHHHHH
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLGREWGYGICAC  226 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~  226 (591)
                      +++...+|..+|+.+.+.+.+..++....+...+
T Consensus       349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~  382 (406)
T PRK15402        349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLA  382 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHH
Confidence            9999999999999999999888776554444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.07  E-value=2.4e-09  Score=115.09  Aligned_cols=152  Identities=15%  Similarity=0.018  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007736           43 CERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII  122 (591)
Q Consensus        43 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~  122 (591)
                      +.....+.+..++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++.++..++...... 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-  318 (426)
T PRK12307        242 SIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ-  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            3333445567788999875 699999999988899999999999999999998 9999998888776665544433210 


Q ss_pred             CCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchh
Q 007736          123 PSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSL  202 (591)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  202 (591)
                                           .....+....+..+++..+..+..+.++.|.+|++.      |+++.|+.+...++|+.
T Consensus       319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~  371 (426)
T PRK12307        319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT  371 (426)
T ss_pred             ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence                                 111112122222222333334556678899999998      99999999889999999


Q ss_pred             hhhhhhhhhccccccchhHHHH
Q 007736          203 AAVTVLVYIQDNLGREWGYGIC  224 (591)
Q Consensus       203 ~~p~i~~~l~~~~g~~~~f~~~  224 (591)
                      ++|.+.|++.+.+|+....++.
T Consensus       372 ~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        372 FNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHHHHHHHHcccHHHHHHHH
Confidence            9999999999988866543333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.07  E-value=2.2e-09  Score=113.91  Aligned_cols=171  Identities=9%  Similarity=-0.026  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      .+..+...++...+.+....++++|+.+.+|.+..+.+.+.+...++..++.++.|+++||+ |+|+.+.++..+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            45555555555556666667788888888999999999999999999999999999999997 99999998888877777


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccc-cccCCCCCCChhhhhccchhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSG-FGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      ++.....                       .+.....+..++.++|..+..+.... ...+..+++.      ++.+.  
T Consensus       280 ~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~--  328 (382)
T PRK10091        280 LMLFFFG-----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG--  328 (382)
T ss_pred             HHHHHHH-----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH--
Confidence            6554321                       13333344444555554444433333 3333334333      44433  


Q ss_pred             hHHHHhhchhhhhhhhhhhccc-cccchhHHHHHHHHHHHHHHHH
Q 007736          193 FFFFISIGSLAAVTVLVYIQDN-LGREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~  236 (591)
                      .+...++|..+||.++|++.+. .+|++.+.+.++..++....+.
T Consensus       329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            3566789999999999999885 6899999888766555544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.06  E-value=2.4e-09  Score=113.99  Aligned_cols=174  Identities=14%  Similarity=0.013  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFL-GTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      .++..+...++...+......+.+.|+.+ .|++.++.+++..... ....++.+++|++.||+ |+|+.+.++..+.++
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS  286 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            35556666677777777777888899875 7999999999888775 46677899999999998 999999887766544


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCC-CChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDD-SDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~  190 (591)
                      ..++...... ...                 ..+...+....++.+++.+...+...+...+..++ +.      +++.+
T Consensus       287 ~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~  342 (390)
T TIGR02718       287 LALLWFAQAA-FWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDV  342 (390)
T ss_pred             HHHHHHHHHH-ccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHH
Confidence            3332222110 000                 01223333444445556666666777777777765 66      89999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHH
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGL  232 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~  232 (591)
                      ++.+...++|..++|.++|++.+..||+..|.+.+++.+++.
T Consensus       343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888776555544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=99.05  E-value=1.1e-09  Score=115.67  Aligned_cols=148  Identities=11%  Similarity=0.049  Sum_probs=115.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +..+...+..++....++....++| ++.+++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..... .++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~  326 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLL-GAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHH-HHH
Confidence            3445555566677777788888888 66678899999999999999999999999999999998 99855444333 333


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ...++....                       .+.....+..++.|++.+...+...+++.|.+|+++      |+++.+
T Consensus       327 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g  377 (398)
T TIGR00895       327 FAVLVGSTL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVG  377 (398)
T ss_pred             HHHHHHHHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHH
Confidence            333332211                       245556667788899988888999999999999998      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhh
Q 007736          192 WFFFFISIGSLAAVTVLVYI  211 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l  211 (591)
                      +.+....+|..++|.++|++
T Consensus       378 ~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       378 WAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999876

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.05  E-value=2.5e-11  Score=133.49  Aligned_cols=159  Identities=11%  Similarity=0.148  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007736           43 CERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTII  122 (591)
Q Consensus        43 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~  122 (591)
                      +.+....++.....+-+.++++++.+++|++.+.+-++..+..++..+..+|. -|-|.+-+|.++.++|.+++++    
T Consensus        13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l----   87 (539)
T PF03137_consen   13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL----   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc----
Confidence            33367777777777888999999999999999999999999999999999996 7888889999999999998886    


Q ss_pred             CCCCCCCCCCC-----------CCCcc-------------------cccchhHHHHHHHHHHHHHhcccccccccccccc
Q 007736          123 PSLRPPKCNLN-----------HGQSC-------------------IQASGMQLVVLYIALYLTALGTGGLKSSVSGFGS  172 (591)
Q Consensus       123 ~~~~~~~~~~~-----------~~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  172 (591)
                      |+.-...+.+.           +...|                   ..........++++.++.|+|....++...+|+=
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            44322111100           01111                   1111123466788999999999999999999999


Q ss_pred             CCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhc
Q 007736          173 DQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQ  212 (591)
Q Consensus       173 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~  212 (591)
                      |..++++      -...+|+.+....+|.++|.++++...
T Consensus       168 Dnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  168 DNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ----------------------------------------
T ss_pred             ccccccc------CccchhhhhHHhhccHHHHHHHHHHHH
Confidence            9999998      788899999999999999988887654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.04  E-value=3.5e-08  Score=109.41  Aligned_cols=206  Identities=11%  Similarity=0.172  Sum_probs=148.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .+.+..++....+.+..+.++.....+-+.+.++++.++.|++.+.+-++..+...+..|.+-|. =|-|.+-+|.++++
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG  173 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence            34455555555555555558888888888999999999999999999999999999999999996 78889999999999


Q ss_pred             HHHHHHHHHhhcC--C---C---------------------CCCCCCCCCCCcc-cccchhHH-HHHHHHHHHHHhcccc
Q 007736          111 AGVTILTISTIIP--S---L---------------------RPPKCNLNHGQSC-IQASGMQL-VVLYIALYLTALGTGG  162 (591)
Q Consensus       111 i~~~l~~~~~~~~--~---~---------------------~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~l~g~g~g~  162 (591)
                      ++.+++++--.+.  .   .                     .+..|...+..+. -...+... ..++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            9999988631000  0   0                     0122222222221 11222223 3678899999999999


Q ss_pred             ccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc------------------cc-cchhHHH
Q 007736          163 LKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN------------------LG-REWGYGI  223 (591)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~------------------~g-~~~~f~~  223 (591)
                      .++...+|+=|...+++      -...+|+.+....+|.++|.+++++....                  .| |+..|++
T Consensus       254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            99999999999988888      78899999999999999999888876421                  12 5566666


Q ss_pred             HHHHHHHHHHHHHhcCCcee
Q 007736          224 CACAIVFGLVVFLSGTRRYR  243 (591)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~  243 (591)
                      +..+.++..+.++++.++.+
T Consensus       328 ~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  328 CGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHhCcccCc
Confidence            66666666655555544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.04  E-value=2.9e-09  Score=113.88  Aligned_cols=173  Identities=15%  Similarity=0.169  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFL-GTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      .++..++..++.+.+......+.+.|+.+++|++..+.+++.+... .+..++.+++|+++||+ |||+.+.++.++..+
T Consensus       210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l  288 (402)
T PRK11902        210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAV  288 (402)
T ss_pred             CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            3444445445544443333345566777789999999999876654 56889999999999997 999988877766665


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHH----HHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIAL----YLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      ..+........+                    .+.+.+.+..    +..+++.+...+....++.+.+|.++      + 
T Consensus       289 ~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~-  341 (402)
T PRK11902        289 SNLGYWVLAVTP--------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y-  341 (402)
T ss_pred             HHHHHHHHHhcC--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H-
Confidence            544332211101                    1333333333    34456666666777777877777554      4 


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  236 (591)
                         ++++...++|..+++.++|.+.+..||+..|.+.+++.+++.++.+
T Consensus       342 ---~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        342 ---ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               4444445667766667899999999999999988877766655543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.02  E-value=2.2e-09  Score=110.98  Aligned_cols=174  Identities=13%  Similarity=0.122  Sum_probs=145.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +++...++..++.+=+.-.+......|-...+|++..+...+....++..+++++++|+|.||+ |-|+++++++++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            4777778888888888888888899999999999999999999999999999999999999997 999999999988877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ..+...+.                        .....+.+.-++.|+..|+.++..-++.++.+|+++      -++++|
T Consensus       331 ~~~~~~~~------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFg  380 (438)
T COG2270         331 AALYLIFL------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFG  380 (438)
T ss_pred             HHHHHHHc------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceee
Confidence            77666554                        234445555577899999999999999999999999      899999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  236 (591)
                      +|++.....+.+||...+.+.+.+| -|..+....++..++++.+.
T Consensus       381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            9999999999999999999988775 55555555555555555443

>TIGR00896 CynX cyanate transporter

Probab=99.02  E-value=4.5e-09  Score=110.26  Aligned_cols=153  Identities=12%  Similarity=-0.037  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++...+..++....+++...++|.|+++ +|.+..+.+.+.+.+.++..++.++.|+++||+-+||+.+.++.++.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            445666666667777888888999999975 7999999999999999999999999999999972456677777777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCC-CChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDD-SDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~  190 (591)
                      +.+.+....                        +.... ...++.|++.+...+...+.+.+..++ ++      +++..
T Consensus       276 ~~~~~~~~~------------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g~~~  324 (355)
T TIGR00896       276 GLCGLLFAP------------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AAALS  324 (355)
T ss_pred             HHHHHHHhh------------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HHHHH
Confidence            776665541                        11111 134677899988888777776665544 44      78888


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLG  216 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g  216 (591)
                      ++.+...+++..++|.+.|++.++.|
T Consensus       325 ~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       325 AMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=98.99  E-value=8.1e-09  Score=111.78  Aligned_cols=165  Identities=16%  Similarity=0.095  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYL-TGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      .++...+..++.....++...+++.|+ ++.+|+++.+.++....+.++..++.+++|++.||+ |||+++..+..+..+
T Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~  337 (438)
T PRK10133        259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA  337 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            344455556666677777778889996 567899999999999999999999999999999997 999999888777666


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +.++..+.   +                     +. .......+.|++.+..+|...+...+.+|++.       +.+.+
T Consensus       338 ~~~~~~~~---~---------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~  385 (438)
T PRK10133        338 LCLISAFA---G---------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS  385 (438)
T ss_pred             HHHHHHHc---C---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence            55544432   1                     11 12445677899999999999999999887643       44455


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFG  231 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~  231 (591)
                      +... ..+|+.++|.+.|.+.+..| -+..|++..++.+..
T Consensus       386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            5443 33688889999999999887 678887766554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.99  E-value=7.6e-09  Score=109.21  Aligned_cols=164  Identities=9%  Similarity=-0.031  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .++...+...+....++....+.|.|+++++|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            445555555556666777778889999889999999999999999999999999999999997 9999999888887777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .+++......+                   ......+.+..++.|++.+...+.......|..| ++      ++++.++
T Consensus       286 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~  339 (385)
T TIGR00710       286 AVLLEITAILG-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL  339 (385)
T ss_pred             HHHHHHHHHhc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence            76665542100                   0133444555667788888888888888888876 45      8899999


Q ss_pred             hHHHHhhchhhhhhhhhhhccccccchhHHH
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLGREWGYGI  223 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~  223 (591)
                      ++.....++.+++.+.+.+.+..+|...+..
T Consensus       340 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       340 FGTLRLVLGAIVGYLVSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhccccChHHHHHHH
Confidence            7777655444444455555554455444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.99  E-value=3.3e-09  Score=116.48  Aligned_cols=172  Identities=13%  Similarity=0.080  Sum_probs=144.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .+..++...++.++....+...+|.+..+.+|.+....|++.+.+.++..++.++.+++.+|+ ++++.+..+.++++++
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~  297 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALA  297 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHH
Confidence            344444445555555555667789999999999999999999999999999999999999997 9999999898888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .+.++++                        .+.+..+++.++.|++.........+.+-+..|++.      |||.+++
T Consensus       298 ~~~lal~------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si  347 (524)
T PF05977_consen  298 LLLLALS------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI  347 (524)
T ss_pred             HHHHhcc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence            8888776                        477777888888899988888888899999999999      9999999


Q ss_pred             hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      +++....+..+|..+.|.+.+.+|-+.++.+.++..+++.++.
T Consensus       348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888887776555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.98  E-value=2.4e-09  Score=117.02  Aligned_cols=156  Identities=12%  Similarity=0.092  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++...+..++....+++...++|.|+++.+|.+..+.++......++..++.++.|++.||+ |||+.+.++..+.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            4566667777788888888899999999999999999999999999999999999999999997 999999998888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +..++..... +                   +.+...+....++.|+|.+...+.......+.+|+++      |+++.+
T Consensus       334 ~~~~~~~~~~-~-------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~  387 (485)
T TIGR00711       334 GFYWRAFTFT-P-------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSS  387 (485)
T ss_pred             HHHHHhccCC-C-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHH
Confidence            7776663211 1                   0244555566778899988887777777778889888      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccc
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~  214 (591)
                      +++...++|+.+|+.+.+.+.++
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.98  E-value=4.9e-09  Score=115.56  Aligned_cols=173  Identities=12%  Similarity=0.021  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHH------------HHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHH
Q 007736           40 GEACERLTTLGIAVNLVTYLTGTMHLGNASAAN------------TVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        40 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~  107 (591)
                      ..++..+.+|++..++|.+++ +.|++..+.+.            ......++..++.++.++++||+ |||++++++..
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~  373 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence            344556678888888888885 56776442211            12233445566888999999998 99999988887


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.+++.++.++.....                    .+...+....+...++..+..+..+.+.+|.+|++.      |+
T Consensus       374 ~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~  427 (502)
T TIGR00887       374 ILTVLFFVLGFAYNHL--------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RS  427 (502)
T ss_pred             HHHHHHHHHHHHHHhc--------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HH
Confidence            7777766665432100                    011111111111222223334566778899999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccc----------cccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDN----------LGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~----------~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      ++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.. +..++
T Consensus       428 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpE  490 (502)
T TIGR00887       428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPE  490 (502)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEecc
Confidence            999999999999999999999998774          234455666655555444433 33444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10054 putative transporter; Provisional

Probab=98.98  E-value=4.3e-09  Score=112.35  Aligned_cols=170  Identities=11%  Similarity=-0.053  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTG--TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      |.++...+..++....+.....+++.|+..  +.+.+....+.+...+.+.......+.|++.||+ ++|+.+..++.+.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            445556666666666666666677777653  3455566667777777777777778889999997 9999999998888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++..+..+..                       .+.+.+.++.++.++|.+...|...+.+.+..|++.      |+++
T Consensus       285 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~  335 (395)
T PRK10054        285 VIGLVGFIFSG-----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASY  335 (395)
T ss_pred             HHHHHHHHHcc-----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceeh
Confidence            88777665431                       255556677888899988878888889999999888      8998


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGL  232 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~  232 (591)
                      ++..+ ...+|..+||.++|++.|+.|....|++.+....++.
T Consensus       336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  377 (395)
T PRK10054        336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW  377 (395)
T ss_pred             HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence            88765 5668999999999999999998878777655444333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.96  E-value=5.3e-09  Score=115.11  Aligned_cols=154  Identities=9%  Similarity=-0.030  Sum_probs=129.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.+....+..++....+++...++|.|+++.+|.++.+.+.....+.++..++.++.|++.||+ |||+.+..+.++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4556666777777788888889999999999999999999999999999999999999999998 999999888888887


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +..++.....                     ..+.....+..++.|+|.|...+.......+..|+++      ++.+.+
T Consensus       338 ~~~~l~~~~~---------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~  390 (495)
T PRK14995        338 SFYGLAMTDF---------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGA  390 (495)
T ss_pred             HHHHHHHhcC---------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHH
Confidence            7766654311                     0233445566788899999988888888889999998      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhcc
Q 007736          192 WFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                      ++++..++|+.+|+.+.+.+.+
T Consensus       391 ~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        391 IETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887754

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.93  E-value=2.4e-08  Score=109.04  Aligned_cols=163  Identities=12%  Similarity=0.020  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 007736           50 GIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPK  129 (591)
Q Consensus        50 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  129 (591)
                      ....+.|.+ .+.+|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+      
T Consensus       289 ~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~------  360 (479)
T PRK10077        289 VVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ------  360 (479)
T ss_pred             HHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC------
Confidence            334444544 456888877777777777888899999999999998 999999999998888887776542100      


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHHhcccc-ccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhh
Q 007736          130 CNLNHGQSCIQASGMQLVVLYIALYLTALGTGG-LKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVL  208 (591)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~  208 (591)
                                   .... ....+.++.+++.+. ..+....+++|.+|+++      |+++.++.+...++|..+++.+.
T Consensus       361 -------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~  420 (479)
T PRK10077        361 -------------APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTF  420 (479)
T ss_pred             -------------cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence                         0111 122233333333332 23667899999999998      99999999888888888886555


Q ss_pred             h------hhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          209 V------YIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       209 ~------~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +      ++.+..+|+..|++.++..+++.+..+...+
T Consensus       421 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             HHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence            4      4456788888888877655555554444333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.93  E-value=3.1e-08  Score=105.70  Aligned_cols=167  Identities=13%  Similarity=0.034  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++...+..++...+.++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+ .+..+..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~  293 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHH
Confidence            3455555555666666667667765555567899999999999999999999999999999995 544 44434344333


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ..+++....                       .+.+.+.+..++.|++.+...+...+++.+..|+ +      +++..+
T Consensus       294 ~~~~l~~~~-----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~  343 (394)
T PRK10213        294 SALVLTLWG-----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGS  343 (394)
T ss_pred             HHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHH
Confidence            333332221                       3555666778888999988888888888888874 3      456666


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVF  230 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~  230 (591)
                      +.....++|..+||.++|++.+..|++..++...+..++
T Consensus       344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            766777899999999999999999988888877654433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=1.9e-08  Score=107.61  Aligned_cols=155  Identities=8%  Similarity=-0.010  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007736           48 TLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRP  127 (591)
Q Consensus        48 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~  127 (591)
                      +.....++|.|+++..+ ++.+.+++.+...+...+...+.+++.||..+.++.+..+..+.+++..+++..        
T Consensus       224 ~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--------  294 (400)
T PRK11646        224 AVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--------  294 (400)
T ss_pred             HHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--------
Confidence            33445678888876655 667888887777766665555566666654366777777777777777666654        


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhh
Q 007736          128 PKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTV  207 (591)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i  207 (591)
                                      ++...+.+..++.+++.+...|...+++.+..|+++      |++++++++...++|..+||.+
T Consensus       295 ----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l  352 (400)
T PRK11646        295 ----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIG  352 (400)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccc
Confidence                            345555566677788888888888999999999999      9999999999999999999999


Q ss_pred             hhhhcccc---c-cchhHHHHHHHHHHHHH
Q 007736          208 LVYIQDNL---G-REWGYGICACAIVFGLV  233 (591)
Q Consensus       208 ~~~l~~~~---g-~~~~f~~~~~~~~~~~~  233 (591)
                      +|++.++.   + ....++...+..+++.+
T Consensus       353 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        353 GGWLFDLGKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             hHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            99998864   2 24445444444444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.90  E-value=8.1e-09  Score=111.61  Aligned_cols=178  Identities=13%  Similarity=0.060  Sum_probs=122.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch-------hHHHHH-
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG-------RYLTIA-  103 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-------rk~~~~-  103 (591)
                      +.+|.+.+..++.+++++.+..++|+|+.+.+|++..+.|++.++..+...+..+++|+++||...       +||.+- 
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            478999999999999999999999999999999999999999999999999999999999999733       122222 


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhh
Q 007736          104 IFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQER  183 (591)
Q Consensus       104 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  183 (591)
                      ++....++..+.+++.   +      |.+        . ......+.++..+.|+..++++    .-..|..| +.    
T Consensus       338 i~~~~~ai~l~~l~~~---~------~~~--------~-~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap-q~----  390 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFT---S------DEH--------R-LLAVILLTIAIGLSGFNISGFY----KNHQDIAP-QH----  390 (466)
T ss_pred             HHHHHHHHHHHeeeec---C------CCc--------c-hHHHHHHHHHHHHcccchhhhH----hhhhhccc-hH----
Confidence            2233333333333332   1      000        0 0112222222233333333322    22222233 33    


Q ss_pred             hccchhhhhhHHHHhhchhhhhhhhhhhccc---cccchhHHHHHHHHHHHHHHHHhc
Q 007736          184 NQMTNFFNWFFFFISIGSLAAVTVLVYIQDN---LGREWGYGICACAIVFGLVVFLSG  238 (591)
Q Consensus       184 ~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~  238 (591)
                        -+..+++.+...++.+.++|.+.+.+...   ..|+..|++.+...+++.+++.++
T Consensus       391 --a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 --AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence              58889999999999999999999999842   369999999998877776655544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.90  E-value=1.5e-08  Score=122.94  Aligned_cols=163  Identities=12%  Similarity=0.079  Sum_probs=131.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChH-HHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNA-SAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      +.++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3455555556666666677788899999999999999 999999999999999999999999997 99998888888777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++.+++.+.                        .+...+++..++.|++.++..+...+++.+.+|++.      |++++
T Consensus       311 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~  360 (1146)
T PRK08633        311 LSLFLLPTA------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVL  360 (1146)
T ss_pred             HHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhh
Confidence            777766654                        356666777888899999888888999999999999      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhcc-ccccchhHHHHH
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQD-NLGREWGYGICA  225 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~-~~g~~~~f~~~~  225 (591)
                      ++.++..++|..+++.+++.+.. .+++...|++.+
T Consensus       361 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~  396 (1146)
T PRK08633        361 AANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIA  396 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999999888877776643 134444555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.90  E-value=3.1e-08  Score=106.93  Aligned_cols=164  Identities=18%  Similarity=0.130  Sum_probs=135.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .|.+...++..++...+........+.|.+..+|.+ ...+.+.....++..++.++.++++||+ |+|+++..+..+.+
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA  301 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence            356777888888888888888888888888778777 5667777788999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhccchh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ-ERNQMTNF  189 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~  189 (591)
                      ++.++..+...                      .+.+.+++..++.|++.+.......++++|..+.++-+ .++..+..
T Consensus       302 ~~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~  359 (428)
T PF13347_consen  302 LGFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMY  359 (428)
T ss_pred             HHHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHH
Confidence            99988877621                      37888888999999999999999999999999865421 12336888


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccc
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                      ++.+++...++..+++.+.+.+.+..|+.
T Consensus       360 ~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  360 FSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            88899999999999999999886655543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.89  E-value=3.6e-08  Score=104.20  Aligned_cols=166  Identities=14%  Similarity=-0.007  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchh---HHHHHH-HHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGR---YLTIAI-FAT  107 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr---k~~~~~-~~~  107 (591)
                      +.+|.+.+..++....+|++..|+|+|+++ .|++.. .+....+..+.+.++   .++++||. .|   |+.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            567888899999999999999999999965 678764 555555555544444   57888886 54   333332 233


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.++.....+..                        .+.....+...+.+++.....+...++.+|.+|++.      |+
T Consensus       266 ~~a~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rg  315 (368)
T TIGR00903       266 LIAAFFLALAFE------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HG  315 (368)
T ss_pred             HHHHHHHHHHHc------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cC
Confidence            333333233322                        122233334445566666666777889999999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      ++.|+.+...++|+.++|.+.+.+..  |.+..|.+.++..+++.+..
T Consensus       316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887763  55666766665555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.87  E-value=5.4e-09  Score=108.62  Aligned_cols=144  Identities=20%  Similarity=0.169  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLG-NASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      +|..+...++....+.....++|.|+.+.+|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence            444555556666677788999999999999999 78999999999999999999999999997 9888887777766666


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      ...+.....                     ..+........++.|++.+...+...+++.|.+|+++      |+++.++
T Consensus       287 ~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  339 (352)
T PF07690_consen  287 ALGLLLLPF---------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGL  339 (352)
T ss_dssp             HHHHCCSHH---------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHH
T ss_pred             HHHHHHHHH---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence            655544321                     0245566667778899999999999999999999998      9999999


Q ss_pred             hHHHHhhchhhhh
Q 007736          193 FFFFISIGSLAAV  205 (591)
Q Consensus       193 ~~~~~~ig~~~~p  205 (591)
                      .+...++|+.+||
T Consensus       340 ~~~~~~~~~~igP  352 (352)
T PF07690_consen  340 FNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.86  E-value=1.1e-08  Score=107.31  Aligned_cols=145  Identities=16%  Similarity=0.095  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFL-GTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      .++.+.+..++.+.+++....+++.|+++ +|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            36667777777888889999999999987 9999999998887665 67789999999999998 999999888887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      +..+.........        +|+     ....+.+.+..+.++.+++.+...+...+++.|.+|+++      |++.++
T Consensus       288 ~~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  348 (356)
T TIGR00901       288 TNAGFVWLASNGH--------HDG-----ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMA  348 (356)
T ss_pred             HHHHHHHHHhcCc--------ccc-----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHH
Confidence            6665544311000        000     000134556677788899999999999999999999999      999999


Q ss_pred             hhHHHHh
Q 007736          192 WFFFFIS  198 (591)
Q Consensus       192 ~~~~~~~  198 (591)
                      +++...+
T Consensus       349 ~~~~~~~  355 (356)
T TIGR00901       349 LLSSLSA  355 (356)
T ss_pred             HHHHHHh
Confidence            9877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.85  E-value=1.3e-08  Score=123.30  Aligned_cols=182  Identities=13%  Similarity=-0.014  Sum_probs=132.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++..++..++.......+..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4667777777777778888889999999999999999999999999999999999999999987 666666555555555


Q ss_pred             HHHHHHHHh-hcCCCCCCCCCCCCCCcccc-cchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          112 GVTILTIST-IIPSLRPPKCNLNHGQSCIQ-ASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       112 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +.+.+.+.. .... .     +..-..... ....+.+.+.++.++.|++.+...+...+++.+.+|++.      |+++
T Consensus       304 ~~~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v  371 (1140)
T PRK06814        304 FGLDLAFASSSVPA-E-----PAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARV  371 (1140)
T ss_pred             HHHHHHhccccccc-c-----cccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceee
Confidence            444333310 0000 0     000000000 000244566777888899999988889999999999999      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhcc-ccccchhHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQD-NLGREWGYGICAC  226 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~-~~g~~~~f~~~~~  226 (591)
                      +|..++..++|..+++++++.+.+ ..++...+++.++
T Consensus       372 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        372 IAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999999999999999998864 3455555554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.85  E-value=6e-08  Score=102.37  Aligned_cols=149  Identities=7%  Similarity=-0.032  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      ..+...+..++...+.+....+.|.++.+.+|.+..+.+.+.+...++..++.++.|+++||+ |||+++.++..+..+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            345555555566666677777778888888999999999999999999999999999999997 9999999888765544


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .+.+......+                    .+.+.+.++..+.+.+.+...+.....+.|..| +.      ++++.+.
T Consensus       274 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~  326 (377)
T PRK11102        274 GIWLVVSALLD--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL  326 (377)
T ss_pred             HHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence            33322221000                    133333344444444445555555666777766 55      7888888


Q ss_pred             hHHH-Hhhchhhhhhhhh
Q 007736          193 FFFF-ISIGSLAAVTVLV  209 (591)
Q Consensus       193 ~~~~-~~ig~~~~p~i~~  209 (591)
                      .+.. ..+|..+++++++
T Consensus       327 ~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        327 AGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            5543 3466666666544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.5e-08  Score=109.14  Aligned_cols=176  Identities=16%  Similarity=0.183  Sum_probs=149.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch--hHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG--RYLTIAIFATVQ  109 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rk~~~~~~~~~~  109 (591)
                      +.++..++...+...+++.-..+++.|.. .++.+..+.+.+.+...+...++.++.|+++|+. .  ++.+..+++++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            57777888888889999999999999987 8899999999999999999999999999999996 5  344555566666


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.+.+.+.                        .++..+...-++.|+..|.........+.|+.+.++      -..+
T Consensus       376 gl~~~~~p~~------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a  425 (509)
T KOG2504|consen  376 GLARLFLPFA------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNA  425 (509)
T ss_pred             HHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchH
Confidence            6666566655                        477788888888999999998888889999999999      9999


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcC
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGT  239 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  239 (591)
                      +|+...+..++..+||.++|++.|..| |...|+.+.++.+++.+..++..
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999999999999887 99999999888777765554443

>PRK09848 glucuronide transporter; Provisional

Probab=98.82  E-value=1.5e-08  Score=109.90  Aligned_cols=163  Identities=15%  Similarity=0.138  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |.++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4566666777777777777777778888888888766655555555677888999999999998 999999999988888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhh-hhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE-RNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~  190 (591)
                      +.+++.+.   +.                   .+.+.+++..++.++|.+...+...++.+|..|.++.+. .+.++..+
T Consensus       307 ~~~~~~~~---~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~  364 (448)
T PRK09848        307 GYLLFFWV---SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTY  364 (448)
T ss_pred             HHHHHHHc---Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHH
Confidence            87766653   10                   355666677788899999999999999999887654210 11258888


Q ss_pred             hhhHHHHhhchhhhhhhhhhhcccccc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGR  217 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~  217 (591)
                      +.+++...+|..+|+.+.+.+.+..||
T Consensus       365 ~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        365 SLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999887665555

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.82  E-value=2e-07  Score=98.79  Aligned_cols=140  Identities=14%  Similarity=0.238  Sum_probs=105.1

Q ss_pred             cchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhh
Q 007736          387 FFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVF  466 (591)
Q Consensus       387 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  466 (591)
                      ..-.+-+.+-++..+++    +|.+       ..+.+.+|+.+..+-++.++.++                      ++|
T Consensus       414 ~~~~gEI~~~ffs~klI----~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~----------------------n~W  460 (618)
T KOG3762|consen  414 LCHAGEILFYFFSFKLI----EKIG-------HVNVMYLGLACNVGRFLYYSYLQ----------------------NPW  460 (618)
T ss_pred             hhccchHHHHHHHHHHH----HHhc-------ccceeeehhhHHHHHHHHHHHhc----------------------Cch
Confidence            33344444444444555    5533       33557889999988888888763                      667


Q ss_pred             HHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCCCCccccccCCcchH
Q 007736          467 WLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLST-LSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLY  545 (591)
Q Consensus       467 ~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~-~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~  545 (591)
                      .+++.-++.|+..++...+..+|+...+|++.+++++|+.... ..+|-.+|++++|.+.+..+              ..
T Consensus       461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg--------------~~  526 (618)
T KOG3762|consen  461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG--------------AR  526 (618)
T ss_pred             heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh--------------hH
Confidence            7777889999999999999999999999999999999999955 69999999999999886543              34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007736          546 DFYWLLAILSALNFVIYLAFARWYVYKD  573 (591)
Q Consensus       546 ~~f~~~~~~~~v~~~~~~~~~~~~~~~~  573 (591)
                      ..|+.+++.|++..+....+-+..+++.
T Consensus       527 ttf~~~giAcl~~l~~~~~iq~~l~~~~  554 (618)
T KOG3762|consen  527 TTFRIFGIACLVTLALFISIQLLLKRRG  554 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            5788888888888776666555444443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.81  E-value=1.1e-07  Score=101.37  Aligned_cols=161  Identities=8%  Similarity=-0.070  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007736           42 ACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTI  121 (591)
Q Consensus        42 ~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~  121 (591)
                      ++...........++.|+++.+|.+..+.+.+.+...++..+++++.|++.||+ ++++.+..+.. .++...+....  
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~--  290 (393)
T PRK11195        215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ--  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH--
Confidence            334445555666778888888999999999999999999999999999999997 88888877753 33333333332  


Q ss_pred             cCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhch
Q 007736          122 IPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGS  201 (591)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  201 (591)
                                            .+.+...+..++.|++.+...++..+.+.+..|++..     ++++.+..++..++|.
T Consensus       291 ----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~-----~g~~~a~~~~~~~~~~  343 (393)
T PRK11195        291 ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVG-----AGHSIAVQNFNENLAM  343 (393)
T ss_pred             ----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCccccc-----chhHHHHHhHHHHHHH
Confidence                                  3455556667788888888887788888776444321     6899999999999999


Q ss_pred             hhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          202 LAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       202 ~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      .++..+.+.+ +..|-+..+++..+..+++...
T Consensus       344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            9999888855 5678777777766655554443

>PRK11043 putative transporter; Provisional

Probab=98.80  E-value=1.4e-07  Score=100.71  Aligned_cols=156  Identities=10%  Similarity=-0.065  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT  114 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  114 (591)
                      +...+...+....++....++|.|++ ++|.+..+.++......++..++..+.+++.||+ |+|+.+.......+++.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~  283 (401)
T PRK11043        206 LGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVI  283 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence            33333444445566666777888875 5799999999888888888899999999999997 999987666655555544


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736          115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF  194 (591)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (591)
                      .+......+                   ..+...+.+...+.+++.+...+...+...|..| ++      ++++.++++
T Consensus       284 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~  337 (401)
T PRK11043        284 AIWLASLLS-------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQN  337 (401)
T ss_pred             HHHHHHHhc-------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHH
Confidence            333221100                   0234445555667788888888888777777765 46      899999999


Q ss_pred             HHHhhchhhhhhhhhhhccccccc
Q 007736          195 FFISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                      .....++..++.+.+.+.+.....
T Consensus       338 ~~~~~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        338 TLQLGLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHHHHHHHHHHHccCCChhH
Confidence            888888888888888887644333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.78  E-value=1.5e-07  Score=100.09  Aligned_cols=79  Identities=14%  Similarity=0.038  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 007736           40 GEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTIS  119 (591)
Q Consensus        40 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~  119 (591)
                      ...+..........+.|.|+++++|++..+.+.+.+...++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        211 ITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444555667788888999999999999889999999999999999997 99999999988888887777664

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.76  E-value=1.3e-07  Score=103.41  Aligned_cols=165  Identities=12%  Similarity=0.038  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |.++.+++..++.....+......+.|.+...+ +....+.+.+...++..++.++.++++||+ |+|+++.++..+.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            566667777777777777666666655444443 455666666666688889999999999998 999999988887776


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ-ERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~  190 (591)
                      +.+........+                   ..+...+.+..++.+++.+...+...++++|..|.++-+ .++..+..+
T Consensus       309 ~~~~~~~~~~~~-------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~  369 (473)
T PRK10429        309 SCGVLLLMGLAA-------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY  369 (473)
T ss_pred             HHHHHHHHhccC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence            665554321101                   034555666667788888888888899999997754311 111145578


Q ss_pred             hhhHHHHhhchhhhhhhhhhhcccccc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGR  217 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~  217 (591)
                      +...+..-+|..+++.+.|++.+..|+
T Consensus       370 s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        370 SVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999988776665

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.74  E-value=2.3e-07  Score=98.92  Aligned_cols=180  Identities=10%  Similarity=0.040  Sum_probs=134.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.+...++..++.+.+.-....+.+.|+++.-+.+....+.+.++..++=.+.....+++..|+ |-|+++.++.+..++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV  285 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3455666677777777777788889998754447777778777777788888888999999997 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      =..+.+.... |.                  ............+.|+..+........++.+..|++.      |+++.+
T Consensus       286 R~~l~a~~~~-~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~  340 (400)
T PF03825_consen  286 RWLLYAYFSD-PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQG  340 (400)
T ss_pred             HHHHHHHhcC-Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHH
Confidence            8888877521 00                  0112223344567899999999999999999999999      999999


Q ss_pred             hhHH-HHhhchhhhhhhhhhhccccccch------hHHHHHHHHHHHHHHHHh
Q 007736          192 WFFF-FISIGSLAAVTVLVYIQDNLGREW------GYGICACAIVFGLVVFLS  237 (591)
Q Consensus       192 ~~~~-~~~ig~~~~p~i~~~l~~~~g~~~------~f~~~~~~~~~~~~~~~~  237 (591)
                      +++. ...+|..+|..++|++.|++|-+.      .+.+.++..++..+.++.
T Consensus       341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9665 467999999999999999877443      344444444444444443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=2.5e-06  Score=91.01  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHH
Q 007736           74 VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIAL  153 (591)
Q Consensus        74 ~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (591)
                      .++-.....+.+++.+.+.|+. |.|..+.++...+.+-.+..-.                         .|-..++.+-
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-------------------------~N~y~~yfss  109 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-------------------------PNSYYLYFSS  109 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-------------------------cchHHHHHHH
Confidence            5566677889999999999997 9999999998877765554443                         3777889999


Q ss_pred             HHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhh
Q 007736          154 YLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVL  208 (591)
Q Consensus       154 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~  208 (591)
                      +++|+|.+..+...-.+++++..++.      +.+..++.......+..+|..+.
T Consensus       110 allG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  110 ALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            99999999999999999999988887      77777776666666666664443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.73  E-value=8.3e-08  Score=103.05  Aligned_cols=190  Identities=12%  Similarity=0.103  Sum_probs=138.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      ++.+.+.+...++.++..-.......+.+-++-|++..++.++.........+..+++.++.||+ |||+.++++..+..
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA  346 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence            34566777777777777766677777777788899999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHH-HHHHHH--HHhccccccccccccccCCCCCCChhhhhccc
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVL-YIALYL--TALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l--~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +..+++.....+...                .+.....+ +++.++  ..++.| ..|..+-+.+|++|++.      |.
T Consensus       347 ~~~~~~~~~~~l~~~----------------~~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~------R~  403 (485)
T KOG0569|consen  347 VALLLMSIALFLSNS----------------FGSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSA------RS  403 (485)
T ss_pred             HHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccc------hH
Confidence            888887776543210                00001111 222222  233333 24788899999999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeec
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFK  245 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  245 (591)
                      .++++......+...+.......+.+..|- ..|.+.++..++..+..+...||.+.+
T Consensus       404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            999998888888887777777777777775 556666665556666666666765544

>TIGR00898 2A0119 cation transport protein

Probab=98.72  E-value=6.7e-08  Score=106.48  Aligned_cols=129  Identities=9%  Similarity=-0.009  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHH
Q 007736           75 TNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALY  154 (591)
Q Consensus        75 ~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (591)
                      ....+...++.++.++++||+ |||+.+.++.++.+++.+++.+...                      .......+..+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~  418 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAV  418 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHH
Confidence            344567778899999999997 9999999998888887776665411                      11223333344


Q ss_pred             HHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          155 LTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       155 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      +.+++.+...+....+.+|.+|++.      |++++++.+....+|++++|.+.+ +. ..++..++++.+...+++.+.
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence            4555666666778899999999998      999999999999999999999988 43 345556666655544444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.71  E-value=4.8e-07  Score=91.92  Aligned_cols=166  Identities=14%  Similarity=0.007  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      ..|.+.+-..+++..+|.+..|+|.++. +.|+|..++|...+...+.+...++..-++++|...+|+.......++.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            4577777777899999999999999987 579999999999999999999999999999998757888888888888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .+-+.+.   |.                   ......   .+++|+|.|+.++....++.+..++.+.     -++..++
T Consensus       288 ~~G~~~~---P~-------------------~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgm  337 (395)
T COG2807         288 LVGLLLA---PG-------------------QLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGM  337 (395)
T ss_pred             HHHHHHh---hh-------------------hHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHH
Confidence            8877765   21                   122222   4889999999999999999988765441     5566666


Q ss_pred             hHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHH
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIV  229 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~  229 (591)
                      .+-...+=+.+||.+.|++.|..| |+.+++..+.+.+
T Consensus       338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i  375 (395)
T COG2807         338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL  375 (395)
T ss_pred             hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence            666666778889999999998875 8777665554433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.69  E-value=2.8e-07  Score=93.29  Aligned_cols=170  Identities=12%  Similarity=0.047  Sum_probs=110.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhc-----------------CCChHHHHHHHHHHHHHHHHHHhhhHHHh
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLT--GTM-----------------HLGNASAANTVTNFLGTSFMLCLLGGFIA   92 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~--~~~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~G~la   92 (591)
                      +........-|.++..||++.-......+  +.+                 ..+...--.-.-+..+..+.+.++.|++.
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            34455555666778888887644332221  111                 11222111122344577889999999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhcccccccccccccc
Q 007736           93 DTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGS  172 (591)
Q Consensus        93 D~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  172 (591)
                      ||+ |||+++...++++++..+++..... +                  . .....++.+|++..    +.+.+.+.|..
T Consensus       406 erl-GRKkTMal~l~~f~iflfll~~c~~-r------------------n-~~tvllf~arafis----g~fqvaYvYtP  460 (528)
T KOG0253|consen  406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-R------------------N-AYTVLLFTARAFIS----GAFQVAYVYTP  460 (528)
T ss_pred             HHh-cchhHHHHHHHHHHHHHHHHHHhcC-c------------------c-hhHHHHHHHHHHHh----chheEEEEecC
Confidence            996 9999999999999998887776421 0                  0 13344567777554    33456789999


Q ss_pred             CCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          173 DQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       173 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      |.+|...      |+.+.|....+..+|+++.|.++ ...+..-.-..+...++ .+++.+.
T Consensus       461 EVyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~-~ilagIa  514 (528)
T KOG0253|consen  461 EVYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGAL-FILAGIA  514 (528)
T ss_pred             cccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHH-HHHHHHH
Confidence            9999999      99999999999999999999988 33333223334443333 3334333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.69  E-value=1.2e-07  Score=99.46  Aligned_cols=141  Identities=13%  Similarity=0.081  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .++...+..++.....+.+..+++.|+++.+|.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+....+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            456666666666667778889999999999999999999999999999999999999999998 9998888777766666


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      ..++.+... +                   ..+.....+...+.+++.|...+...+++++.+| ++      +++..|+
T Consensus       305 ~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~  357 (366)
T TIGR00886       305 AFLVVLGLV-S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGL  357 (366)
T ss_pred             HHHHHhcCC-C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHH
Confidence            655554311 0                   0034444444445555555555667777888877 45      8999999


Q ss_pred             hHHHHhhch
Q 007736          193 FFFFISIGS  201 (591)
Q Consensus       193 ~~~~~~ig~  201 (591)
                      .+...++|+
T Consensus       358 ~~~~~~~g~  366 (366)
T TIGR00886       358 VGAIGNLGG  366 (366)
T ss_pred             HHHhccCCC
Confidence            888877763

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.63  E-value=2.4e-07  Score=97.64  Aligned_cols=179  Identities=12%  Similarity=0.060  Sum_probs=142.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMH---LGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~  107 (591)
                      .|++|.+.+........|+..-.-.+.|.+..++   .++...|.+.+...+.-++...+..++-+|+ |.|+.++++..
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            4567777776666666666665567888775443   4556678888888888899999999999997 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +..+=..+++++                        .+.+.+.+...+.++-.+........++++.+|++.      .+
T Consensus       298 i~~iRi~~~~~~------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sA  347 (412)
T PF01306_consen  298 IMAIRIIGSGFA------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SA  347 (412)
T ss_dssp             HHHHHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HH
T ss_pred             HHHHHHHHHhhh------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HH
Confidence            999999998887                        478889999999999999999999999999999988      77


Q ss_pred             hhhhh-hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          188 NFFNW-FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       188 ~~~~~-~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +...+ ++.+..+|..+.+.++|.+.|+.|++..|++.+..+++..++-++..+
T Consensus       348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            78877 578888999999999999999999998888777666555555444444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.63  E-value=5.4e-07  Score=96.69  Aligned_cols=164  Identities=10%  Similarity=-0.024  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGT-MHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      ..+...+..++......+..++++.|+.+. .+.+....+...+.+..+..++.+++|+++||+ ++||++.+...+.++
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            345555556665555556778899998653 244555555566777788899999999999997 999998888777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      ..++....                        .+. ......++.+++.+..+|...+...+..+++.      ......
T Consensus       312 ~~ll~~~~------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~  360 (410)
T TIGR00885       312 LCLGSIFA------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG  360 (410)
T ss_pred             HHHHHHHc------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH
Confidence            66666653                        121 22455667788888888999999999998775      443444


Q ss_pred             hhHHHHhhchhhhhhhhhhhcccc------ccchhHHHHHHHHHH
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNL------GREWGYGICACAIVF  230 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~------g~~~~f~~~~~~~~~  230 (591)
                      +..  ..+|+++.|.+.|++.|..      +.+.+|+++.++.+.
T Consensus       361 l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       361 LVM--AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHH--HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            433  2399999999999999954      477888887765443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09669 putative symporter YagG; Provisional

Probab=98.59  E-value=2.8e-07  Score=99.99  Aligned_cols=162  Identities=11%  Similarity=0.016  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTG-TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      +.++.++...++...+...... +..|..+ .++ +....+.+.....+...++.++.++++||+ |+|+.+.++.++.+
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~  305 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFV  305 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhh-hhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence            3445555555554444443333 3344433 333 233334455556677888899999999998 99999998877665


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhccchh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ-ERNQMTNF  189 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~  189 (591)
                      +..+...+..  +                    .+...+++..++.|++.+...+..+++++|..|.++.+ .++..+..
T Consensus       306 ~~~~~~~~~~--~--------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~  363 (444)
T PRK09669        306 ILSALIFFIP--P--------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV  363 (444)
T ss_pred             HHHHHHHHhC--c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence            5443333221  1                    35666777778899999999999999999998754421 11224667


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccc
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGRE  218 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~  218 (591)
                      ++.++++..+|.++|+.++|.+.+..|+.
T Consensus       364 ~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        364 FSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88899999999999999999988777663

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.57  E-value=2.8e-07  Score=89.25  Aligned_cols=148  Identities=20%  Similarity=0.228  Sum_probs=92.3

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 007736           56 VTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHG  135 (591)
Q Consensus        56 ~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  135 (591)
                      ..|+.+.+++...+++.+....+....+...+.|-|+||- ||||.-..    +.+...++.+.-+.             
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvt----ycitYiLsCiTKhS-------------  121 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVT----YCITYILSCITKHS-------------  121 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceee----ehHHHHHHHHhhcC-------------
Confidence            4567778899999999887777777888889999999997 99996554    34444455444322             


Q ss_pred             CcccccchhHHHHHHHHHHHHHhccccccccccc-cccCCCCCCChhhhhccchhhhh-hH----HHHhhchhhhhhhhh
Q 007736          136 QSCIQASGMQLVVLYIALYLTALGTGGLKSSVSG-FGSDQFDDSDPQERNQMTNFFNW-FF----FFISIGSLAAVTVLV  209 (591)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~----~~~~ig~~~~p~i~~  209 (591)
                              +++-.++++|++-|+..+...+..-+ +++|+.+++..     -....+. +.    ++..+-++++.+.+-
T Consensus       122 --------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-----eqqWls~TFskA~ffgNglvAiiaGlfgn  188 (454)
T KOG4332|consen  122 --------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-----EQQWLSVTFSKAVFFGNGLVAIIAGLFGN  188 (454)
T ss_pred             --------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-----hHhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence                    46778899999999999888766644 45666544432     1111111 11    122222333333344


Q ss_pred             hhcccc--ccchhHHHHHHHHHHHHHH
Q 007736          210 YIQDNL--GREWGYGICACAIVFGLVV  234 (591)
Q Consensus       210 ~l~~~~--g~~~~f~~~~~~~~~~~~~  234 (591)
                      .+.+.+  |--.+|-..++...++..+
T Consensus       189 ~lvd~~slGPVAPFdAAacfLaigmAv  215 (454)
T KOG4332|consen  189 LLVDTFSLGPVAPFDAAACFLAIGMAV  215 (454)
T ss_pred             HHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            455554  4555666665555555444

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.50  E-value=2.4e-06  Score=90.86  Aligned_cols=144  Identities=11%  Similarity=-0.015  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 007736           46 LTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSL  125 (591)
Q Consensus        46 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~  125 (591)
                      .+........+.|+++.+|.+..+.+++......+..++..+.+++.||+ |++...  +.....++.++........  
T Consensus       221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~--  295 (394)
T PRK11652        221 AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG--  295 (394)
T ss_pred             HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--
Confidence            33334445567788888999999999988888888888999999999997 743332  2222222222221110000  


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhh
Q 007736          126 RPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAV  205 (591)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p  205 (591)
                                       ..+.+.+..+.++.++|.+...+...+...|.+| ++      +++..++.+...++|+.+++
T Consensus       296 -----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~  351 (394)
T PRK11652        296 -----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAA  351 (394)
T ss_pred             -----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHH
Confidence                             0244556667788888989888999998889887 45      78889999888999999999


Q ss_pred             hhhhhhccccccc
Q 007736          206 TVLVYIQDNLGRE  218 (591)
Q Consensus       206 ~i~~~l~~~~g~~  218 (591)
                      .+++.+.+...+.
T Consensus       352 ~~~~~~~~~~~~~  364 (394)
T PRK11652        352 LLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHccCCchHH
Confidence            9999887654443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.47  E-value=2.5e-06  Score=75.46  Aligned_cols=131  Identities=21%  Similarity=0.309  Sum_probs=93.0

Q ss_pred             chhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhH
Q 007736          388 FVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFW  467 (591)
Q Consensus       388 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  467 (591)
                      ..++.++..++.+++.+|..||           +.+..+..+..++.+.+...                      .+.+.
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~   53 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS----------------------SNITV   53 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh----------------------ccHHH
Confidence            3445566677777777554443           44666777776666655542                      23445


Q ss_pred             HHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHH
Q 007736          468 LVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDF  547 (591)
Q Consensus       468 li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~  547 (591)
                      +....++.+++.....+..+.++.|..|++.|++.+|+.+....++..+++.+.+.+.+..    +          ....
T Consensus        54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~----------~~~~  119 (141)
T TIGR00880        54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----G----------WRAP  119 (141)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----c----------hHHH
Confidence            5566788888888888888899999999999999999999999999999999999886432    1          2245


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 007736          548 YWLLAILSALNFVIYLAF  565 (591)
Q Consensus       548 f~~~~~~~~v~~~~~~~~  565 (591)
                      |++.++.+++..+..+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       120 FLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            666666666665555444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.30  E-value=1.3e-05  Score=82.74  Aligned_cols=156  Identities=14%  Similarity=0.109  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      ..+...+..|+.-..=-..-++++.|+.+..|++..+.+...+.+..+..++..++-++-.|+ ...|.+.....+..+-
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill  315 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL  315 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344444555554444445677899999988999999999999999999999999999998897 8888877766555444


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .+..++.                        ++ ..-+.+.++.|+..+..+|.+.+...+..|++.        +.-|.
T Consensus       316 ~~~~~l~------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~  362 (422)
T COG0738         316 LLAVALI------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSG  362 (422)
T ss_pred             HHHHHHh------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccce
Confidence            4444443                        23 223445667899999999999999999999443        22222


Q ss_pred             hHHHHhhchhhhhhhhhhhccccccchhHH
Q 007736          193 FFFFISIGSLAAVTVLVYIQDNLGREWGYG  222 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~  222 (591)
                      .-.+..+|+++.|.+-|++.|..|-...+.
T Consensus       363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            233456899999999999999998777665

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.29  E-value=3.6e-05  Score=76.12  Aligned_cols=138  Identities=13%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 007736           47 TTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLR  126 (591)
Q Consensus        47 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~  126 (591)
                      +.|.+ +.....+++.+|+|.+|...+...-.++..+ .++.|.+.|++ |.+.++.+|.+...+|..++.....-.   
T Consensus        17 t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~---   90 (250)
T PF06813_consen   17 TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR---   90 (250)
T ss_pred             cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc---
Confidence            44443 3456678899999999999999888888887 48889999998 999999999999999998887764311   


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhh
Q 007736          127 PPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVT  206 (591)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~  206 (591)
                                +    ...+.+.+.+..++.+.+.+...........+.||+ +      ||++.++.-....+++.+-..
T Consensus        91 ----------i----~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~  149 (250)
T PF06813_consen   91 ----------I----PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQ  149 (250)
T ss_pred             ----------c----CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHH
Confidence                      0    013556666666666666666555555556688984 5      899999966666666665544


Q ss_pred             hhhhh
Q 007736          207 VLVYI  211 (591)
Q Consensus       207 i~~~l  211 (591)
                      +...+
T Consensus       150 i~~~~  154 (250)
T PF06813_consen  150 IYSAF  154 (250)
T ss_pred             HHHHH
Confidence            44333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.28  E-value=3e-07  Score=96.12  Aligned_cols=152  Identities=18%  Similarity=0.208  Sum_probs=119.9

Q ss_pred             cccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007736          381 GASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAE  460 (591)
Q Consensus       381 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  460 (591)
                      .++++....+..+++.|+.+++.+|.-|+           +.+.+|..+..++.+..++..                   
T Consensus        70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~-----------~v~~vG~~iW~~Av~~~~fs~-------------------  119 (493)
T KOG1330|consen   70 LGLLQTVFIVVFMIASPLFGYLADRYNRK-----------RVIAVGIFIWTLAVFASGFSN-------------------  119 (493)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhcCcc-----------eEEeeHHHHHHHHHHHHHHHH-------------------
Confidence            35666677778888999999988655444           447889999988888887642                   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccC
Q 007736          461 IPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLN  540 (591)
Q Consensus       461 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~  540 (591)
                         .+|-+.+.=.+.|+|++.+.|...+++.|.+|++.|++..++++++..+|+.+|-..+..+.+..+   .|.     
T Consensus       120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~---~Wr-----  188 (493)
T KOG1330|consen  120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF---WWR-----  188 (493)
T ss_pred             ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc---ceE-----
Confidence               456666777899999999999999999999999999999999999999999998888877765542   243     


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 007736          541 QGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAE  578 (591)
Q Consensus       541 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  578 (591)
                           +.|++.++++++..+...++.++-.++.+++.+
T Consensus       189 -----~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~  221 (493)
T KOG1330|consen  189 -----WAFRGSAVLGVIVGLLVFLFVREPERGARDEVD  221 (493)
T ss_pred             -----EEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence                 568888899888888777777766655444433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.28  E-value=7.1e-06  Score=87.60  Aligned_cols=162  Identities=16%  Similarity=0.088  Sum_probs=126.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |.....++..++...+.....+.+..|.+-.+|.+.............+..++.++...+++|+ |+|+++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            3445555566677677777777777787777887777777777777888888899999999997 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCh-hhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDP-QERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~  190 (591)
                      +.++..+...                      .+...+++..++.++|.+...+..+++++|..+-+|- ..++.-|..+
T Consensus       315 ~~~~~~f~~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~  372 (467)
T COG2211         315 GYLLLYFTPA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY  372 (467)
T ss_pred             HHHHHHhhcC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence            9999988621                      4788888899999999999999999999999876552 1122245566


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLG  216 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g  216 (591)
                      +.+.+..=+|.+++..+.|++....|
T Consensus       373 s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         373 SGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66777777888888877777655444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=1.3e-06  Score=89.59  Aligned_cols=175  Identities=13%  Similarity=0.029  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch--hHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG--RYLTIAIFATVQA  110 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rk~~~~~~~~~~~  110 (591)
                      .++...+.....+.+.-..-+.+++++.+++..+..+.|...--..+.+.+++.+.|.++||+ +  |......++++..
T Consensus       271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G  349 (464)
T KOG3764|consen  271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVG  349 (464)
T ss_pred             hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHH
Confidence            455555555555666666677888999999986666999888888999999999999999998 9  6555555555544


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +......+.                        .+...+.+-++..+++.+............+.+.+..+.-...+...
T Consensus       350 ~~~~~iP~~------------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVy  405 (464)
T KOG3764|consen  350 VSSGPIPFA------------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVY  405 (464)
T ss_pred             HHhchhHhh------------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHH
Confidence            333333332                        56777888888888888777666665555555544422111378899


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHH
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGL  232 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~  232 (591)
                      ++...+..+|..+||.++|.+.+..|++|.-.+.++.-++-.
T Consensus       406 aIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya  447 (464)
T KOG3764|consen  406 AIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA  447 (464)
T ss_pred             HHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988766665444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.23  E-value=9.1e-06  Score=88.16  Aligned_cols=209  Identities=8%  Similarity=-0.109  Sum_probs=143.6

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCChH------H----HHHHHHHHHHHHHHHHhhhHHHhh
Q 007736           25 RSKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTG-TMHLGNA------S----AANTVTNFLGTSFMLCLLGGFIAD   93 (591)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~------~----~~~~~~~~~~~~~i~~~~~G~laD   93 (591)
                      +..++.++.++.+++..++..++++.+..+...|+.+ .++-++.      +    ..+....+.+...+.+++.-++.+
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677899999999999999999999999998874 3443221      1    123344455555677777788898


Q ss_pred             hhch-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhcccccccccccccc
Q 007736           94 TFLG-RYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGS  172 (591)
Q Consensus        94 ~~~G-rk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  172 (591)
                      ++ | ||++..++.++.+++.....+....+.-..   .....|--...+.......++...+.|+..+......+++++
T Consensus       331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s  406 (477)
T TIGR01301       331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSR---YYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALAS  406 (477)
T ss_pred             Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccc---cccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence            87 8 577778898888888877765532110000   000000000111112466677778899999999999999999


Q ss_pred             CCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccc--cchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          173 DQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLG--REWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       173 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      +..+++..+    .|..+|+.|.++.+...+..+..|.+.+.+|  -.+++.+.++..+++.+..+...|+
T Consensus       407 ~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       407 IRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            999965411    6999999999999999999988887665554  5566777777777777766665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.22  E-value=2.8e-05  Score=83.56  Aligned_cols=167  Identities=13%  Similarity=0.066  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +.++...+..++....++....++|.++++.+|.+..+.++.......+..++..+.+.+.++. +++|.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4567777777777778888888889999999999999999988777788888888888776554 444544444444444


Q ss_pred             HHHHHHHHhh-cCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          112 GVTILTISTI-IPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +.+++..... .+                    .+....+++.++.++|.+...|...+..-  .+.+.+     ++++.
T Consensus       297 g~~l~~~~~~~~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~  349 (413)
T PRK15403        297 GLALLIVGNLLWP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVS  349 (413)
T ss_pred             HHHHHHHHHHHcc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHH
Confidence            5444433210 01                    23333466777788888887777764332  222211     68888


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHH
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACA  227 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~  227 (591)
                      ++++.....+..+++...+++.++ +-...|....++
T Consensus       350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~  385 (413)
T PRK15403        350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV  385 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence            888888888888888888888665 445555544443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.22  E-value=6.8e-06  Score=89.95  Aligned_cols=183  Identities=9%  Similarity=-0.039  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHH----HHHHHHHHHHHHHHHHhhhH----HHhhhhchhHHH--HH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNAS----AANTVTNFLGTSFMLCLLGG----FIADTFLGRYLT--IA  103 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~G----~laD~~~Grk~~--~~  103 (591)
                      +..+++...+....+.-..+.++.|..+..+.+...    .+++.+...+...+..++..    ++.||..+.+..  +.
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            444444455555565566666788877665543222    55666666666666666644    445441122333  36


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhh
Q 007736          104 IFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQER  183 (591)
Q Consensus       104 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  183 (591)
                      +|.++.+++...+++.....         +      .....+.+.+.+..++.++|.....|...+++++..|++.    
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~---------~------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~----  414 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFA---------D------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL----  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhc---------C------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence            77888888877776542110         0      0112588888999999999999999999999999999999    


Q ss_pred             hccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          184 NQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       184 ~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                        |+++++++.....+|..+++.+.....+..+|...|....+..++..+++++
T Consensus       415 --~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       415 --MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999988887777677877776666555554444444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.22  E-value=2.7e-05  Score=84.88  Aligned_cols=160  Identities=9%  Similarity=0.000  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      ..+.++...++..............|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+..+..+.
T Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~  306 (460)
T PRK11462        229 QWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVI  306 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            344444444444444444444444444333443 33445566777888899999999999997 9998877655544443


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhcc--chhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQM--TNFF  190 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~  190 (591)
                      .++..+.   |.                   .+...+++..++.|++.+...+..+++++|..+.++-+ ...|  +..+
T Consensus       307 ~~~~~~~---~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~-tG~r~~g~~~  363 (460)
T PRK11462        307 SLAMFFV---PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWC-NGKRLTGISF  363 (460)
T ss_pred             HHHHHHh---ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHh-cCCCchHHHH
Confidence            3333222   10                   22323344445567777776666778888887744311 1113  4445


Q ss_pred             hhhHHHHhhchhhhhhhhhhhcccccc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGR  217 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~  217 (591)
                      +...+...+|..+++.++|.+.+..|+
T Consensus       364 a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        364 AGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            667788889999999888887665554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.19  E-value=2e-05  Score=78.58  Aligned_cols=150  Identities=19%  Similarity=0.199  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHhhhhcCCCh--HHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007736           47 TTLGIAVNLVTYLTGTMHLGN--ASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPS  124 (591)
Q Consensus        47 ~~~~~~~~l~~yl~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~  124 (591)
                      ........++.+.. ..+.+.  ...+++.+.+.+...++.++.|+++||+ |||+.+..+.....++.+++.+...   
T Consensus        17 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---   91 (338)
T COG0477          17 DLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---   91 (338)
T ss_pred             hcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---
Confidence            33333344455544 344444  4788899999999999999999999998 9998888888765666555555410   


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCC-CChhhhhccchhhhhhHH-HHhhchh
Q 007736          125 LRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDD-SDPQERNQMTNFFNWFFF-FISIGSL  202 (591)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~  202 (591)
                                         .+...+.+.|.+.|++.+...+...+++.|.+|+ +.      |+...+.... ...+|..
T Consensus        92 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  146 (338)
T COG0477          92 -------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLA  146 (338)
T ss_pred             -------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHH
Confidence                               2577888899999999999999999999999998 44      8888888777 5778888


Q ss_pred             hhhhhhhhhccc--cccchhHHHHHH
Q 007736          203 AAVTVLVYIQDN--LGREWGYGICAC  226 (591)
Q Consensus       203 ~~p~i~~~l~~~--~g~~~~f~~~~~  226 (591)
                      ++|.+++.+...  .+|+..|.+...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (338)
T COG0477         147 LGPLLAGLLLGALLWGWRAAFLLAAL  172 (338)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            888777766544  568875555544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.18  E-value=2.8e-05  Score=81.04  Aligned_cols=174  Identities=15%  Similarity=0.104  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT  114 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  114 (591)
                      ...+...++...++..-=..+-+|--+.+|++..+...+.+....+..++....|++..|-.+++++..+++.+.+++..
T Consensus       211 ~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~  290 (403)
T PF03209_consen  211 RRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA  290 (403)
T ss_pred             hHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence            33444444555566665667788888999999999999999999999999999999998655999999999999888888


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736          115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF  194 (591)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (591)
                      +..++...                     .+.+.+..+.++.|+|.|.+.....+.+.|+..+++      -+..+|...
T Consensus       291 lii~a~~~---------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WG  343 (403)
T PF03209_consen  291 LIILAGPL---------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWG  343 (403)
T ss_pred             HHHHHHhc---------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHH
Confidence            77776432                     467888999999999999999999999999999888      889999999


Q ss_pred             HHHhhchhhhhhhhhhhccc----------cccchhHHHHHHHHHHHHHHH
Q 007736          195 FFISIGSLAAVTVLVYIQDN----------LGREWGYGICACAIVFGLVVF  235 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~~~----------~g~~~~f~~~~~~~~~~~~~~  235 (591)
                      ....++..+|-.++|.+.|.          .+|...|.+-++..+++++++
T Consensus       344 aaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  344 AAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888876542          245566666666555555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=1.2e-05  Score=87.59  Aligned_cols=164  Identities=13%  Similarity=0.028  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh---chhHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF---LGRYLTIAIFATV  108 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~~~~~~~~~  108 (591)
                      ..+|...+..+|.....|++..|+|.|+++..|++..+++.+...+.+++.++.+++|+++||.   ..+|........+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4789999999999999999999999999986779999999999999999999999999999993   1666666665554


Q ss_pred             HHHHH-HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          109 QAAGV-TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       109 ~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.+.. +.+....                        .......+.+....+.....+....-..+....+..     +-
T Consensus       353 ~~~~g~~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~  403 (495)
T KOG2533|consen  353 YAIIGAISLLAAA------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----AL  403 (495)
T ss_pred             HHHHHHHHHHhhc------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hH
Confidence            44433 3333321                        122222222223333344445555556666544441     44


Q ss_pred             hhhhhhHHHHhhchhhh-hhhhhhhccccccchhHHHH
Q 007736          188 NFFNWFFFFISIGSLAA-VTVLVYIQDNLGREWGYGIC  224 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~-p~i~~~l~~~~g~~~~f~~~  224 (591)
                      +..+.+..+.+.++.++ ++..+.....++|...|...
T Consensus       404 ~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~  441 (495)
T KOG2533|consen  404 TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML  441 (495)
T ss_pred             HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence            44444444444444444 44445555667888888443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.13  E-value=4.1e-08  Score=106.46  Aligned_cols=187  Identities=15%  Similarity=0.080  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .+...+....+.+...+....+...++.+..+.++.  -.......+...++.+++.++.||+ |||++++.+.++.+++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            444444555555555544555555566666777666  2222334456667788888999997 9999999998888877


Q ss_pred             HHHHH-HHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhh
Q 007736          113 VTILT-ISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFN  191 (591)
Q Consensus       113 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  191 (591)
                      .+.++ .....+.          ..     ...+...+....+.......+..+....+.+|.+|.+.      |+++.+
T Consensus       330 ~~~~~~~~~~~~~----------~~-----~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~  388 (451)
T PF00083_consen  330 SLILGIIFFLGVS----------SS-----SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIG  388 (451)
T ss_pred             ccccccccccccc----------cc-----cccccccceeeeeccccccccccccccccccccccccc------cccccc
Confidence            77665 1110010          00     00011121111111122222344666788999999999      999999


Q ss_pred             hhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCcee
Q 007736          192 WFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYR  243 (591)
Q Consensus       192 ~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  243 (591)
                      +.+....+++.+++.+...+.+..+-...+.+.+.+.++..+..+...+|.+
T Consensus       389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            9888889999999998888887776334455555544555555555555544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.02  E-value=5.3e-05  Score=79.42  Aligned_cols=166  Identities=13%  Similarity=0.105  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhh---chhHHHHHH-HHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTF---LGRYLTIAI-FAT  107 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~~~~~-~~~  107 (591)
                      +.+..+....+...+++-.=.+++++|++ .+|++.+..+.+-....+.+.+.+++.|..+||.   +||||-++. +..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            66677777777778888777889999986 6899999888888788899999999999999984   588876654 445


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCC-CCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhcc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCN-LNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQM  186 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  186 (591)
                      ..+++.++...+..+.   +..|. ..++     ........++++.-++=+..-....+.-++++|+...++.     +
T Consensus       111 ~i~~~l~Lig~aaDig---~~lgd~~~~~-----~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~  177 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIG---LLLGDNERKP-----VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----K  177 (498)
T ss_pred             HHHHHHhhhhhHhhhh---HHhcCCcccc-----cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----h
Confidence            6666777777664332   11110 0000     1113444556666666677777788889999999876662     2


Q ss_pred             chhhhhhHHHHhhchhhhhhhhhhh
Q 007736          187 TNFFNWFFFFISIGSLAAVTVLVYI  211 (591)
Q Consensus       187 ~~~~~~~~~~~~ig~~~~p~i~~~l  211 (591)
                      .++.+++.+.+.+|+.+|...+++.
T Consensus       178 ~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  178 TRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hccchhHHHHHHhcceeeeeccccc
Confidence            2299999999999999998877744

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.01  E-value=0.0017  Score=68.41  Aligned_cols=62  Identities=21%  Similarity=0.279  Sum_probs=52.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          464 SVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVH  525 (591)
Q Consensus       464 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~  525 (591)
                      +.|.+++.++..|+-.+..+...+..+.+..|++.|..++|.......+|..+++.++-++.
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            56666677788888888888888888999999999999999999998888888888765553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.99  E-value=0.0017  Score=66.67  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=95.2

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhh-----hhchhHHH
Q 007736           27 KTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIAD-----TFLGRYLT  101 (591)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD-----~~~Grk~~  101 (591)
                      .++..++++.+++.+..+..- ++...-+|..++ ..|.|-++.+.....+  -=+-.-+++..+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            445667888888888887665 455556666665 5678877766443222  23355677888888     86 99997


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChh
Q 007736          102 IAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ  181 (591)
Q Consensus       102 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  181 (591)
                      -++-+ -+.+|.++..++...+          .+.+.+. ..++...+....+++-+..+.--.++....-.+..+++  
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~----------~~~g~ng-~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--  166 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVD----------RGLGGNG-GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--  166 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCC----------cccccCC-CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence            66532 3345555555554332          1111111 11333333334455555555555555666666677777  


Q ss_pred             hhhccchhhhhhHHHHhhchhhhhhhh
Q 007736          182 ERNQMTNFFNWFFFFISIGSLAAVTVL  208 (591)
Q Consensus       182 ~~~~r~~~~~~~~~~~~ig~~~~p~i~  208 (591)
                          -+-+......+.+.|.+++..+.
T Consensus       167 ----lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  167 ----LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             ----cCchhHHHHHHHhhhHHhhccee
Confidence                67776667777778877775544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.97  E-value=1.8e-05  Score=84.23  Aligned_cols=171  Identities=8%  Similarity=-0.021  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 007736           37 ILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTIL  116 (591)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~  116 (591)
                      +++..++...+.-.+.++|--+++ +.+-.....|...+.-..+-.+.-++.++|..|+ |+-+++.+++++..+=.+..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence            344455555555566666666654 5666666666555556667777888889999997 99999999999999888888


Q ss_pred             HHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh-hHH
Q 007736          117 TISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW-FFF  195 (591)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~  195 (591)
                      ...                        .|.|+.+..-+++|+..+..+..+.+|+++..|++-      |.++.++ ...
T Consensus       454 S~L------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~  503 (618)
T KOG3762|consen  454 SYL------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGI  503 (618)
T ss_pred             HHh------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHH
Confidence            776                        588898999999999999999999999999999999      8899888 556


Q ss_pred             HHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcC
Q 007736          196 FISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGT  239 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  239 (591)
                      .-.+|-.+|.+|+|.+..++|-+..|.+..+.+++.++.+....
T Consensus       504 f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  504 FHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            67899999999999999999989889888777666655554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.97  E-value=5.8e-05  Score=60.42  Aligned_cols=70  Identities=19%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           37 ILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      +-...++...+.-.+.++++.|++ +.|++..++|.+.++..+...+++++.|+++||+ ||++.+.....+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            344556666677778899999998 4899999999999999999999999999999998 888877765543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.91  E-value=6.9e-05  Score=82.60  Aligned_cols=149  Identities=11%  Similarity=-0.034  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh--hcCCCh------HHHHHHHHHHHHHHHHHHhhh----HHHhhhhchhHHHHHHHH
Q 007736           39 GGEACERLTTLGIAVNLVTYLTG--TMHLGN------ASAANTVTNFLGTSFMLCLLG----GFIADTFLGRYLTIAIFA  106 (591)
Q Consensus        39 ~~~~~~~~~~~~~~~~l~~yl~~--~~~~~~------~~~~~~~~~~~~~~~i~~~~~----G~laD~~~Grk~~~~~~~  106 (591)
                      +..++....+|.+..-++.++..  ..+.+.      ...+++.+...+...+..++.    +++.||+ +..+.+.+++
T Consensus       279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~  357 (500)
T PRK09584        279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGM  357 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHH
Confidence            33445556677777777776543  111111      124444555554455555555    6667775 7778899999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhcc
Q 007736          107 TVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQM  186 (591)
Q Consensus       107 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  186 (591)
                      ++.+++.+.++.....+.        .|+       ..+.+.+....+++++|.....|...+++.+..|++.      |
T Consensus       358 ~l~~l~f~~l~~~~~~~~--------~~~-------~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------r  416 (500)
T PRK09584        358 VLCSGAFLVLPLGAKFAN--------DAG-------IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------M  416 (500)
T ss_pred             HHHHHHHHHHHHHHHhcC--------CCC-------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------H
Confidence            999999988877643210        011       1245678888999999999999999999999999999      9


Q ss_pred             chhhhhhHHHHhhchhhhhhhhh
Q 007736          187 TNFFNWFFFFISIGSLAAVTVLV  209 (591)
Q Consensus       187 ~~~~~~~~~~~~ig~~~~p~i~~  209 (591)
                      ++++|.+.+...+|+.++..+.+
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988777777777766554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.90  E-value=0.00022  Score=80.86  Aligned_cols=176  Identities=14%  Similarity=0.123  Sum_probs=121.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH-HHHHHHhhhHHHhhhhch--hHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLG-TSFMLCLLGGFIADTFLG--RYLTIAIFATV  108 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~G--rk~~~~~~~~~  108 (591)
                      +.++...+..++....++++..++|.|+++++|++..+++++.+...+ +..++.+++|+++||+ +  .|+++.+++++
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~  408 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL  408 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence            467777888889999999999999999999999999999999887765 6789999999999997 6  56677777766


Q ss_pred             HHHHHHHHHHHhhc----------------------------------CCCCCCCCCCC---------------------
Q 007736          109 QAAGVTILTISTII----------------------------------PSLRPPKCNLN---------------------  133 (591)
Q Consensus       109 ~~i~~~l~~~~~~~----------------------------------~~~~~~~~~~~---------------------  133 (591)
                      ..++.++......+                                  +....|+|+.|                     
T Consensus       409 ~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~  488 (633)
T TIGR00805       409 STLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSN  488 (633)
T ss_pred             HHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCc
Confidence            66665442210000                                  11122233221                     


Q ss_pred             ---CCCcccc--------------cchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHH
Q 007736          134 ---HGQSCIQ--------------ASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF  196 (591)
Q Consensus       134 ---~~~~~~~--------------~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  196 (591)
                         +.=||.+              .=...+..+++..++..+..+....+....+-+.+|+++      |.-++|+..+.
T Consensus       489 ~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~  562 (633)
T TIGR00805       489 MVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLC  562 (633)
T ss_pred             ceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHH
Confidence               1123331              111123444555555555555555666778888999999      99999995555


Q ss_pred             -Hhhchhhhhhhhhhhccc
Q 007736          197 -ISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       197 -~~ig~~~~p~i~~~l~~~  214 (591)
                       --+|.+-+|++.|++.|.
T Consensus       563 ~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       563 MRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             HHHhcCCChhHHHhhhhhc
Confidence             457888899999988875

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00788 fbt folate/biopterin transporter

Probab=97.88  E-value=1.6e-05  Score=86.95  Aligned_cols=146  Identities=11%  Similarity=-0.076  Sum_probs=112.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccc
Q 007736           60 TGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCI  139 (591)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (591)
                      ++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.+.......--       |...|.   
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~-------~~~~gi---  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRW-------NLAFGI---  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecc-------ccccCC---
Confidence            457899999999999999999999999999999997 999999999988888775543211000       000000   


Q ss_pred             ccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccc---
Q 007736          140 QASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLG---  216 (591)
Q Consensus       140 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g---  216 (591)
                          .+...+...-++.+++.+....+...++.+..|++.      +++.++++....++|..+++.+++++.++.|   
T Consensus       349 ----~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~  418 (468)
T TIGR00788       349 ----SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITC  418 (468)
T ss_pred             ----CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                122344455667788888888888999999999999      9999999999999999999999999988777   


Q ss_pred             --cchhHHHHHH
Q 007736          217 --REWGYGICAC  226 (591)
Q Consensus       217 --~~~~f~~~~~  226 (591)
                        ++..+....+
T Consensus       419 ~~~~~~~~~i~i  430 (468)
T TIGR00788       419 DNSNNLWLLILG  430 (468)
T ss_pred             ccccchHHHHHH
Confidence              6555544433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.84  E-value=9.7e-05  Score=80.57  Aligned_cols=130  Identities=12%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             hhhhhhhhhhhhhhhhhh-hhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhH
Q 007736          389 VGSILLTVPVYDRIIVPI-ARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFW  467 (591)
Q Consensus       389 ~~~~~~~~~l~~~~~~~~-~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  467 (591)
                      .....+..++.+++.||+ +||           +.+.+|.++.+++.+++....                     .+...
T Consensus        55 ~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~---------------------~~~~~  102 (493)
T PRK15462         55 CSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE---------------------IHPSF  102 (493)
T ss_pred             HHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh---------------------cchhH
Confidence            334445556677777665 444           557888888888876554311                     11122


Q ss_pred             HHHHHHHHHHHHHHHhhhhheeecccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchH
Q 007736          468 LVPQFFLVGAGEAFTYIGQLDFFLRECPKG--MKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLY  545 (591)
Q Consensus       468 li~~~~l~g~g~~~~~~~~~~~~~~~~p~~--~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~  545 (591)
                      +.+...+..+|.++..+...+++.|.+|++  .|+++.+++....++|+.+++.+.+++.+..    +|          .
T Consensus       103 ~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----Gw----------~  168 (493)
T PRK15462        103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----SW----------A  168 (493)
T ss_pred             HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----Ch----------H
Confidence            233444555666666677778899999875  7999999999999999999999999986532    23          3


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 007736          546 DFYWLLAILSALNFVIYLA  564 (591)
Q Consensus       546 ~~f~~~~~~~~v~~~~~~~  564 (591)
                      ..|.+.++.++++.+.+++
T Consensus       169 ~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4566655555554444433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.82  E-value=0.00015  Score=80.20  Aligned_cols=195  Identities=12%  Similarity=0.068  Sum_probs=109.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .++.....+....+++.+.+....+....+-+..|.+... .....+..+...++..+++++.||+ |||+.++.+...+
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m  369 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGM  369 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHH
Confidence            4455555555555655555544444444445566665443 4444555677778888889999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      .++.++++........        |..  ................+.. ...+..+..+.+.+|.+|.+.      |+++
T Consensus       370 ~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~v~~-f~~g~g~v~w~~~sEifp~~~------r~~~  432 (513)
T KOG0254|consen  370 SICLVILAVVGVFALY--------YPN--SSKGAGWLAIVFLCLFIFS-FAIGWGPVPWVIVSEIFPLRL------RSKG  432 (513)
T ss_pred             HHHHHHHHHHHHHhcc--------CCC--cccchhHHHHHHHHHHHHH-HhcccccchhhhhhccCcHhH------Hhhh
Confidence            9999988876432210        000  0000012222222222233 333334666788999999999      8888


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHH-HHHhcCCcee
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLV-VFLSGTRRYR  243 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~  243 (591)
                      .++......+...+.......+.+..++...|.+......+... ..++..+|.+
T Consensus       433 ~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  433 ASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            88855554444444333333333333333444444433333333 4444455433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.81  E-value=0.0013  Score=69.33  Aligned_cols=153  Identities=12%  Similarity=0.087  Sum_probs=108.2

Q ss_pred             HHHHHHHhhhh-cCCChHHHHH-HHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 007736           52 AVNLVTYLTGT-MHLGNASAAN-TVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPK  129 (591)
Q Consensus        52 ~~~l~~yl~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  129 (591)
                      -+++..|+.+. .|++..|... +.-+..-.+...-++...++|.. |-|++++++.+...+...++-+.          
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~----------   91 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG----------   91 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence            35678899887 8999988763 34444556677888889999997 99999999888877777776665          


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhh
Q 007736          130 CNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLV  209 (591)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~  209 (591)
                                    .+...+-+.-+.-|++.+.. .+..+++--..|+++      --++.+....+.-+|-.++..++-
T Consensus        92 --------------~sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ  150 (412)
T PF01770_consen   92 --------------TSVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ  150 (412)
T ss_pred             --------------CcHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          46777777777778877774 466778877788777      666677777677677777766555


Q ss_pred             hhcc--ccccchhHHHHHHHHHHHHHHHH
Q 007736          210 YIQD--NLGREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       210 ~l~~--~~g~~~~f~~~~~~~~~~~~~~~  236 (591)
                      .+..  ..++....++......+++++.+
T Consensus       151 llvs~~~~sy~~L~~isl~~~~~a~~~~~  179 (412)
T PF01770_consen  151 LLVSFGGVSYFQLNYISLASVSLALLIAL  179 (412)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4443  23466666666655555555433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.78  E-value=9.7e-05  Score=81.14  Aligned_cols=105  Identities=10%  Similarity=0.130  Sum_probs=79.5

Q ss_pred             hhhhhhhhhhhhhhh-hhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHH
Q 007736          391 SILLTVPVYDRIIVP-IARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLV  469 (591)
Q Consensus       391 ~~~~~~~l~~~~~~~-~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li  469 (591)
                      ...+..++.+++.|| ++||           +.+.+|.++.+++.+.+.+..                     .....++
T Consensus        62 ~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~---------------------~~~~ll~  109 (489)
T PRK10207         62 LVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL---------------------LKPDLIF  109 (489)
T ss_pred             HHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc---------------------cchhHHH
Confidence            334445667777765 4544           668889999998887777531                     1122234


Q ss_pred             HHHHHHHHHHHHHhhhhheeecccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007736          470 PQFFLVGAGEAFTYIGQLDFFLRECPKG--MKTMSTGLFLSTLSLGFFVSSLLVSLVHKV  527 (591)
Q Consensus       470 ~~~~l~g~g~~~~~~~~~~~~~~~~p~~--~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~  527 (591)
                      +..++.++|.++..|...+++.|.+|++  .|+.+.+++....++|..+|+.+++++.+.
T Consensus       110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~  169 (489)
T PRK10207        110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK  169 (489)
T ss_pred             HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677889999999998899999999887  457789999999999999999999999754

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.71  E-value=0.025  Score=60.67  Aligned_cols=190  Identities=10%  Similarity=-0.089  Sum_probs=103.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |..+.+....++.+++-=+.-.-.+.|+.+-+.-+.--.+...-.-.+...+..+.-|...||. .|.+++..++++.-+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            3456677777887777777777788888876543433333333344566778888889999997 999998888765444


Q ss_pred             HHHHHHH----HhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          112 GVTILTI----STIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       112 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +....+.    ....+...        .+    ........+.+..++.++..=+......+.=-|+...=..+......
T Consensus        81 sv~~s~~~~~~l~~~~~~~--------~~----~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La  148 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSS--------SQ----SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA  148 (432)
T ss_pred             HHHHHHHHHHHHHhCCccc--------cc----cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH
Confidence            3322221    11111000        00    00112222222222222222222222233333443211100111266


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHH
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVV  234 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  234 (591)
                      +..+...=.--+.-.++|++.|.+....|......+.+..-+++.++
T Consensus       149 ~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  149 RMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            66666555566788999999999998888776666555554454443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.56  E-value=0.00086  Score=71.87  Aligned_cols=105  Identities=14%  Similarity=0.059  Sum_probs=84.0

Q ss_pred             cchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhh
Q 007736          387 FFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVF  466 (591)
Q Consensus       387 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  466 (591)
                      ....+-.+...+.+++.+|++-|           +.+.++++...+..+++.+..                      +..
T Consensus        70 ~F~ysYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~  116 (511)
T TIGR00806        70 VLPYSHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLGT----------------------SVW  116 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH----------------------HHH
Confidence            33444455556666666544444           567788888887777777642                      566


Q ss_pred             HHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          467 WLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVH  525 (591)
Q Consensus       467 ~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~  525 (591)
                      .+.+.-++.|++++... ..+.++.+.+|++.|+++.|+.+....+|..+++.+++++.
T Consensus       117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888899999999999 88999999999999999999999999999999999999944

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.54  E-value=0.00045  Score=72.54  Aligned_cols=182  Identities=12%  Similarity=0.033  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      +++.++++.....-..+|++...+-.-+ ..-|.++...|++.....+++.+++++.|.++||.-+-|.++.+......+
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV  344 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            4566666666666666666555554333 345677788999999999999999999999999973445555555555555


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCC-CCCChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQF-DDSDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~  190 (591)
                      +.......+..+                    ...+.++....+.|++..+..|.-.-+..|.. |..|       +...
T Consensus       345 ~~~~l~~~t~~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSs  397 (480)
T KOG2563|consen  345 GTLMLLTCTLFL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSS  397 (480)
T ss_pred             HHHHHHHhhccC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccc
Confidence            532222211111                    24455666667778888888888888888875 5554       5566


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccc---cch-hHHHHHHHHHHHHHHHHhcCCc
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLG---REW-GYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g---~~~-~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      |+.+...++-+.+=..+-+...+..+   |.. .-+.......++..+..+.+++
T Consensus       398 Gll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  398 GLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             eeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            67666666666666666676666655   333 3333333333444444444443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.54  E-value=8.9e-05  Score=77.77  Aligned_cols=129  Identities=12%  Similarity=0.078  Sum_probs=96.1

Q ss_pred             HHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhcccc
Q 007736           83 MLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGG  162 (591)
Q Consensus        83 i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~  162 (591)
                      .+..+..++.|++ |||+.-+-+.+++.+..+.++..            +||.-       .+...+..--+.+-++.-+
T Consensus       363 PGyw~tv~~id~i-GRk~iq~~GF~~~~i~~~~~~~~------------y~~~~-------~~~Gf~v~y~l~~ff~NFG  422 (538)
T KOG0252|consen  363 PGYWFTVYFIDII-GRKYIQLMGFFIMTIFFFVIAGP------------YNQLE-------NTIGFVVLYSLTFFFGNFG  422 (538)
T ss_pred             CceeEEEEEeehh-hhHHHHHhhHHHHHHHHHHHcCC------------ccccc-------ccCceeehHHHHHHHHhcC
Confidence            4777788899997 99999999999888877777653            23200       1222222222233455555


Q ss_pred             ccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcc-----ccccchhHHHHHHHHHHHHHHHHh
Q 007736          163 LKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQD-----NLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~-----~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      .......+.+|.||.+.      |++.-|+.-.+.=.|++++.....++.+     ..|.+..|++.+.+.+++.+..++
T Consensus       423 Pn~ttfivpaE~FParv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  423 PNATTFIVPAEIFPARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             CCceeEEeehhhchHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence            56677788899999999      9999999888899999999999999988     678899999888877777665443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.54  E-value=0.048  Score=59.22  Aligned_cols=164  Identities=9%  Similarity=0.044  Sum_probs=103.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----ChHHHHHHHHHHHHHHHHH-HhhhHHHhhhhchhHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHL-----GNASAANTVTNFLGTSFML-CLLGGFIADTFLGRYLTIAI  104 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~-----~~~~~~~~~~~~~~~~~i~-~~~~G~laD~~~Grk~~~~~  104 (591)
                      ++.++...+..||....|+.+-+     +.+.+..     +.....++-+...+...+. .++.+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            45677777777887777665544     4555544     4467788877666665555 89999999997 99999988


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCc-ccccchh------------HHHHHHHHHHHHHhccccccc-ccccc
Q 007736          105 FATVQAAGVTILTISTIIPSLRPPKCNLNHGQS-CIQASGM------------QLVVLYIALYLTALGTGGLKS-SVSGF  170 (591)
Q Consensus       105 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~l~g~g~g~~~~-~~~~~  170 (591)
                      ....+..-..++++.. .|.     ...-|+.. |+.....            +.+..-+.-+...+-.....+ ..+++
T Consensus        80 ~~~~F~~~f~lF~~vl-~p~-----~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~f  153 (472)
T TIGR00769        80 VISPFLGFFALFAFVI-YPL-----SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGF  153 (472)
T ss_pred             HHHHHHHHHHHHHHHH-hcc-----hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666666542 121     11111110 0000000            011111111112222222233 66899


Q ss_pred             ccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhc
Q 007736          171 GSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQ  212 (591)
Q Consensus       171 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~  212 (591)
                      ..|.+..++      -.|.++++..+.|+|..+++.+..++.
T Consensus       154 andi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       154 ANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998      889999999999999999999888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PTZ00207 hypothetical protein; Provisional

Probab=97.35  E-value=0.0015  Score=72.84  Aligned_cols=127  Identities=14%  Similarity=0.116  Sum_probs=87.5

Q ss_pred             hhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHH
Q 007736          398 VYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGA  477 (591)
Q Consensus       398 l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~  477 (591)
                      +.+++.+|+++|           +.+.+|.++..++.+++++...         +.       ...+.+.+.+..++.|+
T Consensus        80 p~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~---------~~-------i~~s~~~l~l~r~l~G~  132 (591)
T PTZ00207         80 PYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQ---------EV-------IEGSVVRLSVYNGLMTL  132 (591)
T ss_pred             HHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhc---------cc-------ccCcHHHHHHHHHHHHH
Confidence            456666544444           6688999999999988877421         00       11356667777889999


Q ss_pred             HHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHH
Q 007736          478 GEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSAL  557 (591)
Q Consensus       478 g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v  557 (591)
                      |.+...+.....+.+.+| +.||.++|+......+|+.+.+.+...+...     +          ...+|++++++.++
T Consensus       133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----~----------~~~~fl~l~vl~~v  196 (591)
T PTZ00207        133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----N----------TSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h----------HHHHHHHHHHHHHH
Confidence            998888777777888887 6799999999999999998655444443321     1          23467777777777


Q ss_pred             HHHHHHHHhh
Q 007736          558 NFVIYLAFAR  567 (591)
Q Consensus       558 ~~~~~~~~~~  567 (591)
                      ..++.+.+.+
T Consensus       197 v~ll~~~~vr  206 (591)
T PTZ00207        197 VGILAIVFMR  206 (591)
T ss_pred             HHHHHHhhee
Confidence            7666555544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.06  E-value=0.01  Score=54.40  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHH
Q 007736           74 VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIAL  153 (591)
Q Consensus        74 ~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (591)
                      .++......+.+++.+.+.+++ |.|+.++++.+.+.+-......                         .+.+.++.+-
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-------------------------~~~~~l~~~s   96 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-------------------------PNSYTLYPAS   96 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-------------------------hhHHHHHHHH
Confidence            4455566777888888899997 9999999998877754443322                         3677888999


Q ss_pred             HHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhh
Q 007736          154 YLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVL  208 (591)
Q Consensus       154 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~  208 (591)
                      ++.|+|.+..+.....++.+..+++.      +++..+++....+.+..+|.++.
T Consensus        97 ~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   97 ALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888777      88888887766666666665544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.97  E-value=0.0055  Score=68.07  Aligned_cols=155  Identities=10%  Similarity=-0.027  Sum_probs=109.9

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChH---HHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHH-
Q 007736           27 KTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNA---SAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTI-  102 (591)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~-  102 (591)
                      ..+..|.+...++..++..+.+|.+..+.|......++-+..   ..++....+.++..++..+.|.+.-++ ||-|.. 
T Consensus       305 Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~l  383 (599)
T PF06609_consen  305 LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQL  383 (599)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHH
Confidence            334457778888888899989999888888888777766553   567777777888889999999999886 776654 


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhh
Q 007736          103 AIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE  182 (591)
Q Consensus       103 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  182 (591)
                      +++..++.++.-+++...  |                    .+........++.|+|.|...........-..|+++   
T Consensus       384 i~~~~~~ta~~Gama~~~--~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~---  438 (599)
T PF06609_consen  384 IFGSVLMTAFCGAMAAVR--P--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED---  438 (599)
T ss_pred             HHHHHHHHHHHHHHHHcc--C--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH---
Confidence            466555555444444431  1                    233334455667788888776666666666678777   


Q ss_pred             hhccchhhhhhHHHHhhchhhhhhhhhh
Q 007736          183 RNQMTNFFNWFFFFISIGSLAAVTVLVY  210 (591)
Q Consensus       183 ~~~r~~~~~~~~~~~~ig~~~~p~i~~~  210 (591)
                         .+.+.++....-.+|+.+|..+..-
T Consensus       439 ---ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  439 ---IGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             ---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence               8999999888888888888765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.88  E-value=0.0038  Score=69.20  Aligned_cols=137  Identities=14%  Similarity=0.158  Sum_probs=100.0

Q ss_pred             cccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 007736          383 SLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIP  462 (591)
Q Consensus       383 ~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  462 (591)
                      ...++..++.+++..+.+.+.++++||           ..+.+++++.+++-+..++.                      
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk-----------~~~~~~~~~~~i~~~~~a~a----------------------  168 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK-----------PVLLVSLLLFIIFGILTAFA----------------------  168 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH-----------HHHHHHHHHHHHHHHHHHHh----------------------
Confidence            345555666677777777777765565           45777777777776555553                      


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Q 007736          463 LSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQG  542 (591)
Q Consensus       463 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~  542 (591)
                      .+++..++.-++.|++........+.++.|..+++.|+.++.+ ......++.+++.+.+++..      +|        
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------~W--------  233 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------DW--------  233 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------hH--------
Confidence            4677778888999999999999999999999999999999999 87888888888888888863      44        


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007736          543 RLYDFYWLLAILSALNFVIYLAFARWYV  570 (591)
Q Consensus       543 ~~~~~f~~~~~~~~v~~~~~~~~~~~~~  570 (591)
                        ...+++..+...+.++. +++.++.+
T Consensus       234 --r~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  234 --RWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             --HHHHHHHHHHHHHHHHH-HHccCcCh
Confidence              24566666666655544 44443433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.84  E-value=0.02  Score=64.49  Aligned_cols=176  Identities=14%  Similarity=0.151  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhhhHHHhhhh-chhHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFL-GTSFMLCLLGGFIADTF-LGRYLTIAIFATVQA  110 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laD~~-~Grk~~~~~~~~~~~  110 (591)
                      ......++..++...+-++.+++|-|+.++++.+...+..+.+... -+..++..++|++..|+ +..|.+..+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            4455567788899999999999999999999999999999986665 55669999999999996 344555555554444


Q ss_pred             HHHHHHHHHhhc-----------------C--------------------CCCCCCCCCC------------------C-
Q 007736          111 AGVTILTISTII-----------------P--------------------SLRPPKCNLN------------------H-  134 (591)
Q Consensus       111 i~~~l~~~~~~~-----------------~--------------------~~~~~~~~~~------------------~-  134 (591)
                      +..+.......+                 |                    ..-.|+|..|                  . 
T Consensus       473 l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~  552 (735)
T KOG3626|consen  473 LSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSD  552 (735)
T ss_pred             HHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCC
Confidence            444331111000                 0                    1123444443                  1 


Q ss_pred             ------CCcccc----------------cchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          135 ------GQSCIQ----------------ASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       135 ------~~~~~~----------------~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                            .-+|.+                .-...+..+++..++..+..+...++...++-+.+++++      |.-++|+
T Consensus       553 ~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~  626 (735)
T KOG3626|consen  553 GNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGF  626 (735)
T ss_pred             CceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHH
Confidence                  223443                111233344444444445555555677788889999999      9999999


Q ss_pred             hHHH-Hhhchhhhhhhhhhhccc
Q 007736          193 FFFF-ISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       193 ~~~~-~~ig~~~~p~i~~~l~~~  214 (591)
                      ..+. .-+|.+-+|++-|++.|.
T Consensus       627 ~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  627 QWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHHHHHhcCCchHhhhhhHhh
Confidence            5555 557888899999998763

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.84  E-value=0.018  Score=61.71  Aligned_cols=154  Identities=11%  Similarity=-0.015  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHH
Q 007736           34 AAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGV  113 (591)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  113 (591)
                      ++...++..+-.++..+.-..+..|+... |++...++..-+...+.+..+.....++.+|+ |..|+=.+++.......
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHH
Confidence            34444444444555556666788898866 99999999999999999999999999999998 99999999988888777


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh
Q 007736          114 TILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF  193 (591)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (591)
                      .++..+...|.-.              ....+...++.+.++.=+|.=++--....++-|..|+++      |++..+..
T Consensus       338 ~~~v~~~~~~~~~--------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq  397 (432)
T PF06963_consen  338 ALCVVSFWAPGSP--------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQ  397 (432)
T ss_pred             HHHHHHHhcCCCC--------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHH
Confidence            7777665444100              011355556666666667888888888999999999999      99999998


Q ss_pred             HHHHhhchhhhhhhhh
Q 007736          194 FFFISIGSLAAVTVLV  209 (591)
Q Consensus       194 ~~~~~ig~~~~p~i~~  209 (591)
                      +...++.-.+-..++-
T Consensus       398 ~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  398 NSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888877755443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.33  Score=51.14  Aligned_cols=57  Identities=19%  Similarity=0.224  Sum_probs=46.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007736          464 SVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLL  520 (591)
Q Consensus       464 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l  520 (591)
                      +-+|.+....++|+..+-.....+.+..+.+|++.+..+..+..+....|-..|..+
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            446667778888988888888888999999999999888888887777777777665

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.82  E-value=0.0049  Score=66.76  Aligned_cols=152  Identities=13%  Similarity=0.087  Sum_probs=117.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhH-HHhhhhchhHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAV-NLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGG-FIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~laD~~~Grk~~~~~~~~  107 (591)
                      +.|..+.++...+.....-.+-.. .++.|+...++++..+.+...+.......+++++.. .+.-. +|-|+++..|++
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~  316 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLL  316 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHH
Confidence            444555555555443333322222 456788889999999999999999999999999998 55555 499999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      ...+...+.+++                        ...++.+....+.++ .....+...++.+.+.++++      ++
T Consensus       317 ~~~~~~~~~af~------------------------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g  365 (463)
T KOG2816|consen  317 SEFLQLLLFAFA------------------------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QG  365 (463)
T ss_pred             HHHHHHHHHHHh------------------------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------cc
Confidence            999999999998                        356666666655554 45556888999999999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhcc
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                      +.+++......+.+.++|.+-+.+..
T Consensus       366 ~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  366 KVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999998876643

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.79  E-value=0.0086  Score=64.55  Aligned_cols=160  Identities=11%  Similarity=0.026  Sum_probs=94.1

Q ss_pred             ccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 007736          384 LTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPL  463 (591)
Q Consensus       384 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  463 (591)
                      ..+...++.++..|+.++...|..          +..+.++.|.++++++.+++..++..                 .+-
T Consensus        76 viaa~slg~~i~~liF~~Ws~k~~----------~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~~~  128 (488)
T KOG2325|consen   76 VIAASSLGHAIFSLIFGIWSNKTG----------SVKKPLIVSFLIAIIGNLLYLALAYV-----------------PNG  128 (488)
T ss_pred             HHHHHHHHHHhcchhhcccccccC----------CcccCHHHHHHHHHHHHHHHHHHHhc-----------------ccc
Confidence            344455666677777766553222          12355899999999999999666421                 122


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcc
Q 007736          464 SVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGR  543 (591)
Q Consensus       464 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~  543 (591)
                      .-+++.+..++.|+|.+..... -.|+++..-.+.|.++++..+....+|..+||.+...+.......-.|.++ ..-+.
T Consensus       129 ~~y~mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~-~~~n~  206 (488)
T KOG2325|consen  129 VKYLMLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPG-LIFNM  206 (488)
T ss_pred             hHHHHHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCc-ceEEe
Confidence            5677888899999996554433 345555444444555555555555666666666655443322211123332 22222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007736          544 LYDFYWLLAILSALNFVIYLAFARWYVYK  572 (591)
Q Consensus       544 ~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  572 (591)
                      ++..-|+.+++.++.+++.+++.+|..+.
T Consensus       207 YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  207 YTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            33455677777888887777777765544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.70  E-value=0.011  Score=61.04  Aligned_cols=133  Identities=14%  Similarity=0.086  Sum_probs=102.7

Q ss_pred             HHHHHHHh-hhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 007736           52 AVNLVTYL-TGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLG-RYLTIAIFATVQAAGVTILTISTIIPSLRPPK  129 (591)
Q Consensus        52 ~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-rk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  129 (591)
                      ..+...++ .+.+|.++.|.|-+.+...+.+.+.++..+...||..| -+-.+..++.+..-..++....          
T Consensus       280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~----------  349 (451)
T KOG2615|consen  280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA----------  349 (451)
T ss_pred             HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc----------
Confidence            33334444 57899999999999888888888888888888998733 3444444444444444555544          


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhh
Q 007736          130 CNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLV  209 (591)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~  209 (591)
                                    .....++.+..+-.+..+...+....++....|.++      ||...|+....++++-++||.++|
T Consensus       350 --------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl~alaRaiGPlv~g  409 (451)
T KOG2615|consen  350 --------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSLGALARAIGPLVSG  409 (451)
T ss_pred             --------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHHHHHHHHhhhhhhh
Confidence                          355677888888888888888888999999999998      999999999999999999999998


Q ss_pred             hhccc
Q 007736          210 YIQDN  214 (591)
Q Consensus       210 ~l~~~  214 (591)
                      .+...
T Consensus       410 ~i~~W  414 (451)
T KOG2615|consen  410 VIFSW  414 (451)
T ss_pred             eeEEE
Confidence            87653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.66  E-value=0.021  Score=46.31  Aligned_cols=72  Identities=7%  Similarity=-0.043  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 007736           46 LTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTIS  119 (591)
Q Consensus        46 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~  119 (591)
                      ++.+.+.+.+|. ++++.++|.++.+++.+...+++.++.+...++.++. .+++.+..+++...+..+.+++.
T Consensus         6 igRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    6 IGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555565554 5678899999999999999999999999999999996 88899999999999999998886

Note that many members are hypothetical proteins.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.46  E-value=0.00073  Score=74.83  Aligned_cols=176  Identities=16%  Similarity=0.155  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH-HHHHHHhhhHHHhhhh-chhHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLG-TSFMLCLLGGFIADTF-LGRYLTIAIFATVQA  110 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laD~~-~Grk~~~~~~~~~~~  110 (591)
                      .+....+...++....-++.+++|-|++.+++++..+++.+.+...+ +..++.+++|++..|+ ++.|+++....+...
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            34444556677888888999999999999999999999998877654 7779999999999996 334554444444333


Q ss_pred             HHHHH----HHHHhhcCCC------------------CCCCCCCC--------CCCcccccchhHHHHHHHHHHHHHhcc
Q 007736          111 AGVTI----LTISTIIPSL------------------RPPKCNLN--------HGQSCIQASGMQLVVLYIALYLTALGT  160 (591)
Q Consensus       111 i~~~l----~~~~~~~~~~------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~g~g~  160 (591)
                      ++.++    +.+.+..+.+                  ...-||.+        ..-.|...=...+..+++..++..+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            33322    1111111100                  11122221        122333331123445555555555666


Q ss_pred             ccccccccccccCCCCCCChhhhhccchhhhhhHHH-Hhhchhhhhhhhhhhccc
Q 007736          161 GGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFF-ISIGSLAAVTVLVYIQDN  214 (591)
Q Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~ig~~~~p~i~~~l~~~  214 (591)
                      +.........+-+.+|+++      |+-+.|+.... --+|.+-||++.|.+.|.
T Consensus       466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            6666666777779999999      99999995544 457888899999988875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK03612 spermidine synthase; Provisional

Probab=96.30  E-value=0.16  Score=56.09  Aligned_cols=173  Identities=13%  Similarity=0.041  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH-HHHHHHH-HHHHH
Q 007736           38 LGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA-IFATVQA-AGVTI  115 (591)
Q Consensus        38 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~-~~~~~~~-i~~~l  115 (591)
                      ....++...+..+.-......+...+|-+..+.+.+++++..+..++..++|+++++. -|+.... +.+.+.+ ++..+
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~l   98 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555556666788889999999999999999999999988553 2332221 1111111 11111


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHH
Q 007736          116 LTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFF  195 (591)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  195 (591)
                      .....  +.                 ........+...++.++..|+..|....+..+... ++      -++..|-.+.
T Consensus        99 l~~~~--~~-----------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~  152 (521)
T PRK03612         99 LYAAF--AF-----------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLA  152 (521)
T ss_pred             HHHHH--HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHh
Confidence            11110  00                 00111122333344566666666665555543222 12      3455666777


Q ss_pred             HHhhchhhhhhhhhhhcc-cccc-chhHHHHHHHHHHHHHHHHh
Q 007736          196 FISIGSLAAVTVLVYIQD-NLGR-EWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       196 ~~~ig~~~~p~i~~~l~~-~~g~-~~~f~~~~~~~~~~~~~~~~  237 (591)
                      ...+|+++|.++.+++.- ..|- +..+.+..+..+++++.++.
T Consensus       153 ~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~  196 (521)
T PRK03612        153 ADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL  196 (521)
T ss_pred             HHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            788889999888886643 5663 34444444444444444333

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.97  E-value=0.0064  Score=65.03  Aligned_cols=118  Identities=17%  Similarity=0.132  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcch--
Q 007736          421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGM--  498 (591)
Q Consensus       421 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~--  498 (591)
                      +.+..|.++++++.++++..+                    ......+.+.++++++|.++.-|...+++.|++|++.  
T Consensus        93 ~tI~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr  152 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR  152 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence            669999999999999998631                    1245566778888889999999998889999887643  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007736          499 KTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYK  572 (591)
Q Consensus       499 rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  572 (591)
                      |..+.+++-..-++|+.+++.+.+++....+              +...|...++-+.++.+.+++..++.+..
T Consensus       153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g--------------~~~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         153 RDGGFTLFYMGINIGSLIAPIITGLLAINYG--------------WHVGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             cCCCccEEEEEeehHHHHHHHHHHHHHHhhC--------------HHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence            5566677777788999999999999975432              34567777777777777776665555544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.89  E-value=0.055  Score=53.64  Aligned_cols=121  Identities=20%  Similarity=0.244  Sum_probs=78.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcc
Q 007736          418 TPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKG  497 (591)
Q Consensus       418 ~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~  497 (591)
                      ++...+.+|.+...+++.++.....         |..      ...+.|.+....++.+.+.............+.+|. 
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~---------~~i------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-  127 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVS---------GRI------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-  127 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHh---------Ccc------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence            4446688899999999887766531         100      124556565556666676666555555555688885 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007736          498 MKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWY  569 (591)
Q Consensus       498 ~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~  569 (591)
                      .||++.|+.-....+++.+-+.+...+...               +.+.++.+++....+..++...+.+..
T Consensus       128 ~RG~vvgilk~~~GLSaai~t~i~~~~f~~---------------~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  128 SRGTVVGILKGFFGLSAAIFTQIYSAFFGD---------------DPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             ccCceehhhhHHHHhHHHHHHHHHHHHcCC---------------ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            699999999999999999888887766531               233455556655555544444444444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.08  E-value=0.091  Score=55.50  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcc---
Q 007736          421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKG---  497 (591)
Q Consensus       421 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~---  497 (591)
                      +.+.+|.++..++++++.+....     +    ..+    ...+...+.+.+++.++|.+..-|+...+..|.++++   
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~-----~----~~~----~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIP-----P----SLP----SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTS-----S----SC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhc-----c----hhh----hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            34788999999998887664310     0    000    1233466778888999999999999999999999876   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007736          498 MKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYV  570 (591)
Q Consensus       498 ~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  570 (591)
                      .|......+-...++|..++..+.+++.+..    +          +...|++.++.++++.+.++.-.++++
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~----~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~  127 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY----G----------WFLGFGIPAIGMLLALIVFLSGRKRYR  127 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---------------HHHHHHHHHHHHHHHHHHHHCCCCTT-
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhcccc----c----------hhhhhhHHHHHHHHHHHHHHhCCcCCc
Confidence            3555666677888999999999888886432    2          334566666666666554444333333

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.65  E-value=0.19  Score=54.31  Aligned_cols=115  Identities=20%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccC---Ccc
Q 007736          421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLREC---PKG  497 (591)
Q Consensus       421 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~---p~~  497 (591)
                      .-+++|.++.+++.+.++....                  ...+.....+.+++..+|..+.....-++..|..   |.+
T Consensus        60 ~Y~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~  121 (433)
T PF03092_consen   60 PYMIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES  121 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence            3367777777766666665421                  1123334455667788888888876666666655   444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 007736          498 MKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARW  568 (591)
Q Consensus       498 ~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  568 (591)
                       +|..++....++.+|+.++..+.|.+.+..+              ....|.+.+++..+..+..+++.++
T Consensus       122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~--------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG--------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC--------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence             7888999999999999999999988875432              2234666777777776666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.64  E-value=0.17  Score=57.45  Aligned_cols=64  Identities=25%  Similarity=0.580  Sum_probs=59.5

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007736          461 IPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLV  524 (591)
Q Consensus       461 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i  524 (591)
                      .+++.+|.++++++.+.|+.+.......+..+.+|+++|+..++++.+..++|+.+...+...-
T Consensus       561 ~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~  624 (654)
T TIGR00926       561 NTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE  624 (654)
T ss_pred             CceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4578899999999999999999999999999999999999999999999999999998887654

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.00  E-value=5.9  Score=42.99  Aligned_cols=63  Identities=13%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007736          466 FWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVT  528 (591)
Q Consensus       466 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~  528 (591)
                      ..+++..++..+....-+.+..++-.+++.|.+-|++|.+.|+.+++|+---..++-++.|..
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            444555667777777777888899999999999999999999999999988887777776643

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.92  E-value=11  Score=40.74  Aligned_cols=57  Identities=12%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 007736          465 VFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLV  521 (591)
Q Consensus       465 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~  521 (591)
                      -++.++..+++|+..+......+.+..+.++++.|..+..+..+...+|-.+|+.+.
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566688999999988888888899999999999999999999899988888774

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.69  E-value=0.35  Score=51.28  Aligned_cols=61  Identities=13%  Similarity=0.050  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhh
Q 007736          145 QLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYI  211 (591)
Q Consensus       145 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l  211 (591)
                      +.+.+++..+..|+..|..+.+....+.|..|+++      |.-+++...++-.+|..++..++-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            67777778888899999999999999999999888      99999999988888888887766444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.67  E-value=0.17  Score=53.75  Aligned_cols=162  Identities=9%  Similarity=-0.100  Sum_probs=95.0

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCC----------------hHHHHHHHHHHHHHHHHHHhhh
Q 007736           26 SKTGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT-MHLG----------------NASAANTVTNFLGTSFMLCLLG   88 (591)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~~----------------~~~~~~~~~~~~~~~~i~~~~~   88 (591)
                      ..+..+|.++.+++..++..++.+...-+...++-++ ++-+                ...-.|=..++.+...+.+...
T Consensus       273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~  352 (498)
T KOG0637|consen  273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV  352 (498)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            4455778999999999998888776666666555332 1111                1122233556677888889999


Q ss_pred             HHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhcccccccc--
Q 007736           89 GFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSS--  166 (591)
Q Consensus        89 G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~--  166 (591)
                      -++.||+ |-|+.++.+...+.++..+.++.                        .+......-+...|+-.+.....  
T Consensus       353 ~~l~~~~-g~r~~y~~~~~~f~~~~~~~gl~------------------------~~~~~~~~~~~~~G~~~~~~~~~p~  407 (498)
T KOG0637|consen  353 EKLSRKF-GTRKRYWGGVNAFGLATGLAGLV------------------------LNTYVVLSHRSTAGILSSPLLTVPY  407 (498)
T ss_pred             HHHHHhc-CcceEEeehhHHHHHHHHHHhhh------------------------hhHHHHHHHHhhcceeecchhcccH
Confidence            9999998 86666665555455555555543                        13333333333333222222222  


Q ss_pred             -------------------ccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccc
Q 007736          167 -------------------VSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLG  216 (591)
Q Consensus       167 -------------------~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g  216 (591)
                                         ..+..+.-..+..    .+++..++..+....+-.++.....|.+.+..|
T Consensus       408 ~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg----~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  408 GALALYAILGIPLAITFSIPFALASIEIGNSG----LGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             HHHHHHHHhCCccccccccccccccccccCcc----CCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence                               2222221111111    225677777888888888888777787777765

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=93.41  E-value=14  Score=40.13  Aligned_cols=163  Identities=12%  Similarity=0.050  Sum_probs=103.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CChHHHHHHHHHHHH-HHHHHHhhhHHHhhhhchhHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMH---LGNASAANTVTNFLG-TSFMLCLLGGFIADTFLGRYLTIAIF  105 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grk~~~~~~  105 (591)
                      .++.+..+.++.+|..+.+..+-.     +.+.+-   .++..+..+-....+ +..+..++.+++.+++ -|.+++.+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~   98 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence            456777777877777665443332     344433   445666777666666 6778899999999997 999999998


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC---cc-----cc-c--------chhHHHHHHHHHHHHHhccccc-cccc
Q 007736          106 ATVQAAGVTILTISTIIPSLRPPKCNLNHGQ---SC-----IQ-A--------SGMQLVVLYIALYLTALGTGGL-KSSV  167 (591)
Q Consensus       106 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~-----~~-~--------~~~~~~~~~~~~~l~g~g~g~~-~~~~  167 (591)
                      +..+....+++++... |     .|..-|+.   +-     .+ .        ...+...+++.   .-+=.... .-.-
T Consensus        99 ~~~F~~fF~LFa~Vi~-P-----~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~---aELWgslV~S~lF  169 (509)
T COG3202          99 LGFFLGFFALFAFVIY-P-----YKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIM---AELWGSLVLSLLF  169 (509)
T ss_pred             HHHHHHHHHHHHHHHh-c-----cccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHH---HHHHHHHHHHHHH
Confidence            8888888888887632 3     33333443   10     00 0        00111111111   11111111 1134


Q ss_pred             cccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcc
Q 007736          168 SGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                      +...-|.+..++      -.|.+++++...|++..++..+..++..
T Consensus       170 w~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         170 WQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567778888888      7899999999999999999888888765

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=92.22  E-value=1.3  Score=40.49  Aligned_cols=62  Identities=18%  Similarity=0.331  Sum_probs=53.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          464 SVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVH  525 (591)
Q Consensus       464 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~  525 (591)
                      +.+.+++.-++.|++.++.....-.++.+...++.+++-.|++......+..+|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888899999999999998889999999999999999999999988888887765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.19  E-value=1.6  Score=47.27  Aligned_cols=116  Identities=17%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             HHHHHHHHhhhHHHhhhh--chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHH
Q 007736           78 LGTSFMLCLLGGFIADTF--LGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYL  155 (591)
Q Consensus        78 ~~~~~i~~~~~G~laD~~--~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  155 (591)
                      ..+..++.++.+.+++|.  .||++++.++..+..++.++.-++.  |...    +.+|-.+...-..++....++.-++
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~da----p~~~t~~~~~~~~~~~~~~~ii~~l  362 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDA----PLRPTDSPPLLFTPSYYLALIIGFL  362 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccC----CCCCCcccccccccchhHHHHHHHH
Confidence            355556667777777663  4899999999999998888887763  2111    1222233333333456667777888


Q ss_pred             HHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhh
Q 007736          156 TALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVT  206 (591)
Q Consensus       156 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~  206 (591)
                      +|++-++.....+.++.+.+| ++      |..+++++-+-..+++.++-.
T Consensus       363 ~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  363 LGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             HhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999994 44      677777776666666655433

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=91.66  E-value=1.8  Score=44.25  Aligned_cols=117  Identities=12%  Similarity=-0.007  Sum_probs=70.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAT  107 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~  107 (591)
                      +...|+++.+-...+....++-+ ..+|-+.+..++|  ....+.+    .......+++.+.+..++ |-|.++.++..
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg--~~sl~~~----y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLG--TVSLGAL----YLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcc--cchhhhh----hHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            34456666665555554444444 4455555443332  2222222    233445555555777775 99999999877


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCC
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDD  177 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  177 (591)
                      .+.......-.                         +.+..+.-+-++.|+|.+..+.+-.+++++.-..
T Consensus        97 ~Y~lyiA~Nl~-------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~  141 (390)
T KOG3097|consen   97 PYALYIAANLE-------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN  141 (390)
T ss_pred             HHHHHHHhhcc-------------------------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence            66653322211                         3666677778889999999999988888876443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=91.37  E-value=5.1  Score=41.68  Aligned_cols=111  Identities=11%  Similarity=-0.024  Sum_probs=63.6

Q ss_pred             ccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 007736          382 ASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEI  461 (591)
Q Consensus       382 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  461 (591)
                      +.+.....+..++.+++.+.+.|+++||.           ..++--++.+++.+..                       .
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-----------~cl~~cily~~scl~k-----------------------~  117 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKK-----------ACLLFCILYSLSCLTK-----------------------H  117 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchH-----------HHHHHHHHHHHHHHHH-----------------------h
Confidence            34455556677888889998888877762           1222222333333221                       2


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhh-----hheeecccCCcchhHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 007736          462 PLSVFWLVPQFFLVGAGEAFTYIG-----QLDFFLRECPKGMKTMSTGLFL-STLSLGFFVSSLLVSLVHK  526 (591)
Q Consensus       462 ~~~~~~li~~~~l~g~g~~~~~~~-----~~~~~~~~~p~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~  526 (591)
                      ..++..+++.=++.|++..+.+..     ..+.-.+.+|++..+...+... +.+.+-.++++.+..++.+
T Consensus       118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~  188 (354)
T PF05631_consen  118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD  188 (354)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence            345677778888888887776543     2233445567666666666555 3344555555555555543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=90.72  E-value=6.9  Score=39.83  Aligned_cols=61  Identities=15%  Similarity=0.290  Sum_probs=41.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007736          464 SVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLV  524 (591)
Q Consensus       464 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i  524 (591)
                      +++.+.+.++.-|+--+..+...+--+.+..+++.|-.+|+.....-.+|..+++.+.-.+
T Consensus       341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            4444444444445555555566666677888889999999988887778777777665444

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=87.70  E-value=17  Score=39.98  Aligned_cols=166  Identities=10%  Similarity=0.023  Sum_probs=96.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCChHHHHHHHHHHHH-HHHHHHhhhHHHhhhhchhHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTM---HLGNASAANTVTNFLG-TSFMLCLLGGFIADTFLGRYLTIAIF  105 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grk~~~~~~  105 (591)
                      .++.++.+.++.||..+.|..+-     -+.+.+   ..++..+..+-....+ +..+...+..+++|++ +|.+++.+.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~   95 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            35567777777777655533222     223221   1255566666443333 5567788899999997 999999887


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCc-cccc---chhHH---------HHHHHHHHHHHhccccccc-cccccc
Q 007736          106 ATVQAAGVTILTISTIIPSLRPPKCNLNHGQS-CIQA---SGMQL---------VVLYIALYLTALGTGGLKS-SVSGFG  171 (591)
Q Consensus       106 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~---------~~~~~~~~l~g~g~g~~~~-~~~~~~  171 (591)
                      ...+..-..+.++.. .|.     ++.=|+.. ++..   ....+         |...+.-+..-+-.....+ .-+++.
T Consensus        96 ~~~F~~fF~~f~~vl-yP~-----~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fA  169 (491)
T PF03219_consen   96 IIPFLGFFALFAFVL-YPN-----RDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFA  169 (491)
T ss_pred             HHHHHHHHHHHHHHH-hhc-----hhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777666666642 231     12222211 0000   00000         1000111111111111112 347888


Q ss_pred             cCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhcc
Q 007736          172 SDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQD  213 (591)
Q Consensus       172 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~  213 (591)
                      .|.++.++      -.|.++++..+.|+|..++..+..++.+
T Consensus       170 N~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  170 NEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888      7899999999999999999888887776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.91  E-value=3.5  Score=41.03  Aligned_cols=140  Identities=14%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCCCCCCCcccccchhHHH
Q 007736           70 AANTVTNFLGTSFMLCLLGGFIADTF-LGRYLTIAIFATVQAAGVTILTIST-IIPSLRPPKCNLNHGQSCIQASGMQLV  147 (591)
Q Consensus        70 ~~~~~~~~~~~~~i~~~~~G~laD~~-~Grk~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (591)
                      -|.+.+.+.++..+++-+..++..|- -.-...+.+...+.+....+..+.. ..|+                  ..++.
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~------------------kes~~  345 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS------------------KESPS  345 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC------------------cCCch
Confidence            46777777777777777776666552 0122344554444444333332221 1111                  02344


Q ss_pred             HHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHH
Q 007736          148 VLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACA  227 (591)
Q Consensus       148 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~  227 (591)
                      .-+++.++.-.+.|.++|....+=++..|++.      |++.++++..-.|+-..++-...-.=....+-|..|-++.+.
T Consensus       346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~  419 (454)
T KOG4332|consen  346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF  419 (454)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence            44677777778889999999999999999998      999999988877765554422110001123566778887766


Q ss_pred             HHHHHH
Q 007736          228 IVFGLV  233 (591)
Q Consensus       228 ~~~~~~  233 (591)
                      ..++.+
T Consensus       420 ~~~a~i  425 (454)
T KOG4332|consen  420 LFVASI  425 (454)
T ss_pred             HHHHHH
Confidence            555543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=85.68  E-value=1.9  Score=44.50  Aligned_cols=96  Identities=11%  Similarity=0.091  Sum_probs=60.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCc-
Q 007736          464 SVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQG-  542 (591)
Q Consensus       464 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~-  542 (591)
                      +.|+.-+.++++.....+..+....-+.+....+.-|...|++.+..-+-..+-+   -.+.+..|     +.-+.... 
T Consensus       325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT---~iVvd~~g-----~~L~ir~Q~  396 (433)
T KOG3810|consen  325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILT---LIVVDDRG-----LGLDIRTQF  396 (433)
T ss_pred             ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhhe---EEEEcccc-----cCCCcceeE
Confidence            5777788889998888888877766777777778788889988876544444333   33444222     11111111 


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          543 -RLYDFYWLLAILSALNFVIYLAFAR  567 (591)
Q Consensus       543 -~~~~~f~~~~~~~~v~~~~~~~~~~  567 (591)
                       -+..+|.+++++.++++.+.+...+
T Consensus       397 ~~Y~~Yf~v~~~i~~~~~~~~~~~~~  422 (433)
T KOG3810|consen  397 VVYSSYFIVLGVIFLIGFGIEYLMCR  422 (433)
T ss_pred             EEEeehHHHHHHHHHHHHHHHHHHhh
Confidence             1234688888888888776555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.16  E-value=3.1  Score=45.05  Aligned_cols=57  Identities=16%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhh
Q 007736          145 QLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTV  207 (591)
Q Consensus       145 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i  207 (591)
                      +.+..++..++.|+..|-..+....+..+..++++      |..+-.+..++..+|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777888999999988888888888888877      7777777777777777777654

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.44  E-value=9.4  Score=32.11  Aligned_cols=41  Identities=12%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 007736          494 CPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPW  534 (591)
Q Consensus       494 ~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w  534 (591)
                      ..+..++.++++-...-.+++.+-+...||+.+.+-++.+|
T Consensus        35 ~a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPw   75 (116)
T COG5336          35 SAESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPW   75 (116)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            34567788888888888999999999999998766556666

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=81.00  E-value=54  Score=35.07  Aligned_cols=83  Identities=19%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhH
Q 007736          421 QRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKT  500 (591)
Q Consensus       421 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg  500 (591)
                      ..++++.+...+..+++.+.                      .+...+-+.-++.|++.+. -...++++...+|+++--
T Consensus        72 pviil~~~~~i~t~~lll~~----------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq  128 (412)
T PF01770_consen   72 PVIILQALSYIITWLLLLFG----------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ  128 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH
Confidence            44666776666666665553                      2455555566666666554 355578888999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007736          501 MSTGLFLSTLSLGFFVSSLLVSLVHK  526 (591)
Q Consensus       501 ~~~gl~~~~~~lg~~lg~~l~~~i~~  526 (591)
                      ++.+.......+|.+++..++..+..
T Consensus       129 ~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen  129 KVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888887764

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	591
2xut_A	524	Proton/peptide symporter family protein; transport	1e-155
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  456 bits (1174), Expect = e-155
 Identities = 113/564 (20%), Positives = 204/564 (36%), Gaps = 58/564 (10%)

Query: 27  KTGGWTSA-AMILGGEACERLTTLGIAVNLVTYLTGTMHLG------NASAANTVTNFLG 79
               W      I+  EACER +  G+   L  +L   + L        A A +   +F+ 
Sbjct: 6   DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65

Query: 80  TSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCI 139
             +   LLGG+IAD F G+Y TI   + +   G   L I                     
Sbjct: 66  GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------------------- 105

Query: 140 QASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISI 199
                 +   Y  L+L ALG+GG+K  VS F  DQFD S+     +    F+ F+F I+ 
Sbjct: 106 ---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK---AFDMFYFTINF 159

Query: 200 GSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVF 259
           GS  A   +  +  N G    +GI    +    V F  G +RY               V 
Sbjct: 160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219

Query: 260 VVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDM-SNST 318
             A   +     +   +   I  +          +P       L  A +     + + ++
Sbjct: 220 RSALLTKVEGKGNIGLVLALIGGVS--AAYALVNIPTLGIVAGLCCAMVLVMGFVGAGAS 277

Query: 319 TVVINKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFE 378
             +           V+ V+ V+R+L ++A    FW+++ Q  +  + QA  M   +    
Sbjct: 278 LQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQW 334

Query: 379 IPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAA 438
              A +       ++L +P  + ++ P   ++       T L+++G G+ ++  + +   
Sbjct: 335 FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVG 391

Query: 439 LCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGM 498
             ++                    LS+FW +  + L+  GE       L+F   + PK M
Sbjct: 392 TIQLMM-------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438

Query: 499 KTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALN 558
           K      +  ++++G     L    V   T   +  +   ++        +  A  + L 
Sbjct: 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT-EQIVQTGMSVTAF--QMFFFAGFAILA 495

Query: 559 FVIYLAFARWYVYKDKRLAEEGIE 582
            +++  +AR Y  +D      G E
Sbjct: 496 AIVFALYARSYQMQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 88/565 (15%), Positives = 176/565 (31%), Gaps = 137/565 (24%)

Query: 35  AMILGGEACERLTTLGIAVNLVTYLT-----GTMHLGNASAANTVTNFLGTSFMLCLLGG 89
           + +   E  ER +  G+   L+ Y+      G +H+  A+AA+ +  +    ++   +GG
Sbjct: 16  STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGG 75

Query: 90  FIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVL 149
           F+AD  +G    +     +   G  +L +                              L
Sbjct: 76  FVADRIIGARPAVFWGGVLIMLGHIVLALPF------------------------GASAL 111

Query: 150 YIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLV 209
           + ++ L  +GTG LK +VS      +D+ D +        F+ F F I++G+  A  ++ 
Sbjct: 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVG 167

Query: 210 YIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLD 269
             Q+  G  +       AI   + +                       V+    +K    
Sbjct: 168 AAQEAAG--YHVAFSLAAIGMFIGLL----------------------VYYFGGKK---- 199

Query: 270 LPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAI------------FKDSDMSNS 317
                    +   +        + +        L  A                     N 
Sbjct: 200 -------TLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINL 252

Query: 318 TTVVIN--------KWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATT 369
            T+V              +      E   V+  +P++   ++FW +  Q +      AT 
Sbjct: 253 LTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSV---VLATF 309

Query: 370 MNRHIGSFEIPGA---SLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVG 426
               + S   P +   SL   F+  +L T P +  +     +    +P       +  VG
Sbjct: 310 AAERVDSSWFPVSWFQSLNPLFI--MLYT-PFFAWLWTAWKKNQPSSPT------KFAVG 360

Query: 427 LV---LSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTY 483
           L+   LS   M               + G           S  WLV  + LV  GE    
Sbjct: 361 LMFAGLSFLLMAIPGA-------LYGTSGKV---------SPLWLVGSWALVILGEMLIS 404

Query: 484 IGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGR 543
              L    +  PK   +    ++  + S+G  +++ LV+L +  +               
Sbjct: 405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--------------- 449

Query: 544 LYDFYWLLAILSALNFVIYLAFARW 568
              ++    + S +  ++ +  ++ 
Sbjct: 450 EVAYFSYFGLGSVVLGIVLVFLSKR 474

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 79/620 (12%), Positives = 165/620 (26%), Gaps = 213/620 (34%)

Query: 37  ILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFL 96
           IL  E  + +     AV+    L  T+    +     V  F+     L +   F+     
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLL---SKQEEMVQKFVEEV--LRINYKFLMSPIK 99

Query: 97  GRYLTIAIFATVQAAGVTILTISTIIPSLRP----PKCNLNHGQ--SCIQASGMQL-VVL 149
                       Q + +T + I              K N++  Q    ++ + ++L    
Sbjct: 100 TEQR--------QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 150 YIALYLTALGTGGL-KSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVL 208
            + +     G  G  K+ V+    D       Q +       ++  F++++ +  +   +
Sbjct: 152 NVLID----GVLGSGKTWVA---LDVCLSYKVQCK------MDFKIFWLNLKNCNSPETV 198

Query: 209 VYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHL 268
           + +   L                                    L QI             
Sbjct: 199 LEMLQKL------------------------------------LYQIDP----------- 211

Query: 269 DLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLA 328
           +  S      NI       +   +RL  +K +               N          L 
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--------------NC---------LL 248

Query: 329 TLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATT---MNRHIGSFEIPGASLT 385
            L +V+  K       +    ++  T + Q+T F  +  TT   ++ H  +   P    +
Sbjct: 249 VLLNVQNAK-AWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKS 305

Query: 386 FFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVG-LVLSIFAMVAAALCE--- 441
                                 + +   PQ L P + +      LS   ++A ++ +   
Sbjct: 306 LL-------------------LKYLDCRPQDL-PREVLTTNPRRLS---IIAESIRDGLA 342

Query: 442 ---------IKRLRAARSHGLTN-DPT---------------AEIP---LSVFWLVPQFF 473
                      +L       L   +P                A IP   LS+ W      
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 474 LVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGD--- 530
            V               + +  K   ++   +          + S+ + L  K+  +   
Sbjct: 403 DV------------MVVVNKLHK--YSL---VEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 531 -KKPWLADNLNQGRLYD------------FYW-----LLAILSALNFV----IYLAFARW 568
            +   + D+ N  + +D            FY      L  I           ++L F R+
Sbjct: 446 HRS--IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RF 502

Query: 569 YVYKDKRLAEEGIELEEPEP 588
               ++++  +         
Sbjct: 503 L---EQKIRHDSTAWNASGS 519

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 76/230 (33%)

Query: 267 HLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKD---SDMSNSTTVVIN 323
           H+D  +    +   D + V                F D  A   +    D+ +    +++
Sbjct: 6   HMDFETGEHQYQYKDILSV----------------FED--AFVDNFDCKDVQDMPKSILS 47

Query: 324 KWNLATLTDVEEVKMVIRML-PIWATTIIFWTVYAQMTT---------------FSVSQA 367
           K         EE+  +I     +  T  +FWT+ ++                  F +S  
Sbjct: 48  K---------EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 368 TTMNRHIGSFEIPGASLTFF--FVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGV 425
            T  R       P      +      +     V+ +  V   +   K  Q L  L+    
Sbjct: 99  KTEQRQ------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AK 151

Query: 426 GLVLSIFAM-------VAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWL 468
            +++    +       VA  +C         S+ +      ++   +FWL
Sbjct: 152 NVLI--DGVLGSGKTWVALDVC--------LSYKVQC----KMDFKIFWL 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	591
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.94
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.33
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.12
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.02
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.94
2xut_A	524	Proton/peptide symporter family protein; transport	98.12

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=4.3e-31  Score=289.58  Aligned_cols=484  Identities=23%  Similarity=0.346  Sum_probs=288.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMH------LGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA  103 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~  103 (591)
                      +++.++.+.+..++.+.++|++..+++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            44567788899999999999999999999999999      999999999999999999999999999999449999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchh-HHHHHHHHHHHHHhccccccccccccccCCCCCCChhh
Q 007736          104 IFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGM-QLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQE  182 (591)
Q Consensus       104 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  182 (591)
                      ++.++.+++.++++++                        . +.+.++++|++.|++.+...+...++++|++|+++   
T Consensus        90 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  142 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIF------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHT------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred             HHHHHHHHHHHHHHHh------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence            9999999999888876                        4 67888999999999999999999999999999998   


Q ss_pred             hhccchh---hhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHH
Q 007736          183 RNQMTNF---FNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVF  259 (591)
Q Consensus       183 ~~~r~~~---~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (591)
                         |++.   +++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++.+.+++++++.....+.+
T Consensus       143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (524)
T 2xut_A          143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI  219 (524)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence               7554   4558999999999999999999988999999998887766665555444333322222222111111111


Q ss_pred             HHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccccccc-------ccCccch
Q 007736          260 VVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKW-------NLATLTD  332 (591)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  332 (591)
                      ....++++.+.+ ......+...   . ........+.+....+..........  . +...+.+|       +.....+
T Consensus       220 ~~~~~~~~~~~~-~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~  291 (524)
T 2xut_A          220 RSALLTKVEGKG-NIGLVLALIG---G-VSAAYALVNIPTLGIVAGLCCAMVLV--M-GFVGAGASLQLERARKSHPDAA  291 (524)
T ss_dssp             -------CTTHH-HHHHHHHHHH---H-HHHHHTGGGTTTTCSSHHHHHHHHHH--H-HHHHTGGGTHHHHSCCSCCSSS
T ss_pred             HHHHhhhhcccC-ccchhhhhhh---h-hhhhhhhcccchhhhhhhhhhhhhhh--h-cccccchhhHHhhhhccccHhH
Confidence            111111100000 0000000000   0 00000000000000000000000000  0 00001112       0001111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcC
Q 007736          333 VEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFK  412 (591)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~  412 (591)
                      .++.++.......+.....++..+.+..+.+..+....+...  + .+.+.....+.+..++..++.+++..+..+|.++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (524)
T 2xut_A          292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV  368 (524)
T ss_dssp             STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence            123344444444555555556666655554433322222210  0 2344555566667777778888775444344322


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecc
Q 007736          413 TPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLR  492 (591)
Q Consensus       413 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~  492 (591)
                      +   ..+.+.+.+|.++.+++++++......          .+.+   ...+.+++++.+++.++++++..+..++++.+
T Consensus       369 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  432 (524)
T 2xut_A          369 K---LTALRKMGAGIAITGLSWIVVGTIQLM----------MDGG---SALSIFWQILPYALLTFGEVLVSATGLEFAYS  432 (524)
T ss_dssp             -----CCHHHHHTHHHHHHHHHHTTTTTTTT----------TTTT---CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred             C---CChHHHHHHHHHHHHHHHHHHHHHHHH----------hcCC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   445566778888888887776543100          0000   12456667778899999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccc-ccCCcchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007736          493 ECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLAD-NLNQGRLYDFYWLLAILSALNFVIYLAFARWYVY  571 (591)
Q Consensus       493 ~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~  571 (591)
                      .+|++.||+++|++++...+|+.+++.+.+.+.+..+  .+|.++ +.+  .....|++.+++++++.++++++.+++++
T Consensus       433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (524)
T 2xut_A          433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQM  508 (524)
T ss_dssp             HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH--HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999998875321  124321 111  11223777888888888777777776665


Q ss_pred             ccc
Q 007736          572 KDK  574 (591)
Q Consensus       572 ~~~  574 (591)
                      ++.
T Consensus       509 ~~~  511 (524)
T 2xut_A          509 QDH  511 (524)
T ss_dssp             ---
T ss_pred             chh
Confidence            543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=8.1e-31  Score=284.82  Aligned_cols=445  Identities=18%  Similarity=0.255  Sum_probs=295.1

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCChHHHHHHHHHHHHHHHHHHhhhHHHhhh-hchhHHH
Q 007736           28 TGGWTSAAMILGGEACERLTTLGIAVNLVTYLTGT-----MHLGNASAANTVTNFLGTSFMLCLLGGFIADT-FLGRYLT  101 (591)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Grk~~  101 (591)
                      +++++.++.+.+..++.+.++|++..+++.|+++.     +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            34567889999999999999999999999999988     99999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChh
Q 007736          102 IAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQ  181 (591)
Q Consensus       102 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  181 (591)
                      +.++.++.+++.++++++                        .+.+.++++|+++|+|.+...+...++++|++|+++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  143 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALP------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSC------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred             HHHHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence            999999999999988875                        46778899999999999999999999999999988733


Q ss_pred             hhhccchhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeec---cCCC-ChhhHHHH
Q 007736          182 ERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFK---KLVG-SPLTQIAS  257 (591)
Q Consensus       182 ~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~  257 (591)
                          |++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++...+   ++++ ...++..+
T Consensus       144 ----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (491)
T 4aps_A          144 ----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP  219 (491)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred             ----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence                677888899999999999999999999999999999998776666655544332221111   1111 11111111


Q ss_pred             HHHH--------------HHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccccc
Q 007736          258 VFVV--------------AWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVIN  323 (591)
Q Consensus       258 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (591)
                      ....              .......                          +..+................      ...
T Consensus       220 ~~~~~g~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~------~~~  267 (491)
T 4aps_A          220 LLVKVSLAVAGFIAIIVVMNLVGWN--------------------------SLPAYINLLTIVAIAIPVFY------FAW  267 (491)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHHSSC--------------------------CTTHHHHHHHHHHHHHHHHH------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc--------------------------ccccchhhhhHHHHHHHHHH------HHH
Confidence            0000              0000000                          00000000000000000000      000


Q ss_pred             ccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeee-ccccccccccccccccccccchhhhhhhhhhhhhh
Q 007736          324 KWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQA-TTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRI  402 (591)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  402 (591)
                      .|+..... ..++++......++.....++..+.+..+.+.... ...+.+    ..+.+.......+..++..++.+++
T Consensus       268 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l  342 (491)
T 4aps_A          268 MISSVKVT-STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWL  342 (491)
T ss_dssp             HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHH
T ss_pred             Hhhccccc-HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHH
Confidence            01000000 01223333334445555555665555544322211 111111    1334556666777777888888888


Q ss_pred             hhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 007736          403 IVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFT  482 (591)
Q Consensus       403 ~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~  482 (591)
                      .+|+.||.      ......+.+|.++.+++++++......       .+    ++  ...+.+++++.+++.+++.+..
T Consensus       343 ~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~--~~~~~~~~~~~~~l~g~~~~~~  403 (491)
T 4aps_A          343 WTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG----TS--GKVSPLWLVGSWALVILGEMLI  403 (491)
T ss_dssp             HHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHH-------CC----CC--TTCCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC----CC--CCccHHHHHHHHHHHHHHHHHH
Confidence            87766552      344566778888888888877764310       00    00  2345667778889999999999


Q ss_pred             hhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHH
Q 007736          483 YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIY  562 (591)
Q Consensus       483 ~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~  562 (591)
                      .+..+.++.|.+|++.||+++|+.+....+|..+++.+.+++.+..               ....|++.+++++++.++.
T Consensus       404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS---------------EVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS---------------TTHHHHHTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988876421               2346777888888887777


Q ss_pred             HHHhhhcccc
Q 007736          563 LAFARWYVYK  572 (591)
Q Consensus       563 ~~~~~~~~~~  572 (591)
                      +++.++.+++
T Consensus       469 ~~~~~~~~~~  478 (491)
T 4aps_A          469 VFLSKRIQGL  478 (491)
T ss_dssp             HHC-------
T ss_pred             HHHHHHHHHH
Confidence            7766655544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=3.4e-28  Score=260.45  Aligned_cols=401  Identities=9%  Similarity=-0.022  Sum_probs=260.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           30 GWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .++.++...+..++.....+.+.+.+|.+. +++ .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            345666666777777777777777777665 456 9999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHH----HhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhc
Q 007736          110 AAGVTILTI----STIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQ  185 (591)
Q Consensus       110 ~i~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (591)
                      +++.+++++    +                        .+.+.++++|+++|++.+...+...++++|++|+++      
T Consensus       103 ~~~~~~~~~~~~~~------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------  152 (451)
T 1pw4_A          103 AAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------  152 (451)
T ss_dssp             HHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred             HHHHHHHHhhhhcc------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence            999999988    5                        467788999999999999999999999999999998      


Q ss_pred             cchhhhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHh
Q 007736          186 MTNFFNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWR  264 (591)
Q Consensus       186 r~~~~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (591)
                      |++++++.+.+.++|..++|.+++++.+..| |++.|++.++..++..+..++..++.+.+....+.             
T Consensus       153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  219 (451)
T 1pw4_A          153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-------------  219 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------
Confidence            9999999999999999999999999888888 99999988876655554444444432211100000             


Q ss_pred             hcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHH-HH
Q 007736          265 KRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIR-ML  343 (591)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  343 (591)
                            .+.              ...    ...+      .     +.+.     .++..++..........+.+.. .+
T Consensus       220 ------~~~--------------~~~----~~~~------~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  259 (451)
T 1pw4_A          220 ------EEY--------------KND----YPDD------Y-----NEKA-----EQELTAKQIFMQYVLPNKLLWYIAI  259 (451)
T ss_dssp             ------TTT--------------CCC---------------------------------CCTHHHHHHTSSCHHHHHHHH
T ss_pred             ------hhh--------------ccc----cccc------c-----hhhh-----hcccccccchHHHHHcCHHHHHHHH
Confidence                  000              000    0000      0     0000     0000000000000000122222 22


Q ss_pred             HHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhh--hhhhcCCCCCCCchh
Q 007736          344 PIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPI--ARKVFKTPQGLTPLQ  421 (591)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~r~~~~~~~~~~~~  421 (591)
                      ..+.....++....+.+.++.. ..+.+      ....+.......+..+++.++.+++.+|+  .+|           +
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~  321 (451)
T 1pw4_A          260 ANVFVYLLRYGILDWSPTYLKE-VKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------G  321 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTT-BSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------h
Confidence            2222222222332222222211 11111      11123344444555566666666666544  222           3


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhH
Q 007736          422 RIGVGLVLSI-FAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKT  500 (591)
Q Consensus       422 ~i~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg  500 (591)
                      .+.++..+.. ++++++...                    ...+.+.+++..++.|++.....+..+.++.+.+|++.||
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g  381 (451)
T 1pw4_A          322 ATGVFFMTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG  381 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh
Confidence            3445554444 454444321                    1124555566677788888888888888999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 007736          501 MSTGLFLSTLSL-GFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARW  568 (591)
Q Consensus       501 ~~~gl~~~~~~l-g~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  568 (591)
                      +++|+.+....+ |..+++.+.+++.+..+              +...|++.+++++++.++.++..++
T Consensus       382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFG--------------WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999 99999999999876432              3456777777777777666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.94  E-value=3.3e-27  Score=256.24  Aligned_cols=413  Identities=11%  Similarity=0.012  Sum_probs=232.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHH
Q 007736           67 NASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQL  146 (591)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (591)
                      ..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++.......      ............+.
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~------~~~~~~~~~~a~~~  126 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI------NPDNTVPVYLAGYV  126 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS------SSSSSCCGGGGGCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cchhHHHHHHhhhH
Confidence            45678889999999999999999999998 999999999999999999998642100000      00000001122688


Q ss_pred             HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhhccc--------cccc
Q 007736          147 VVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYIQDN--------LGRE  218 (591)
Q Consensus       147 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l~~~--------~g~~  218 (591)
                      ..++++|+++|+|.|+..+..+.+++|..|++.      |++..++.+.+..+|..+++.++..+...        .+|+
T Consensus       127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4gc0_A          127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR  200 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence            999999999999999999999999999999999      99999999999999999988877655432        2466


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCc
Q 007736          219 WGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTK  298 (591)
Q Consensus       219 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (591)
                      ..+.+..+..++..+ .....++.+.--..+...++..+.+.....+..                              .
T Consensus       201 ~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~------------------------------~  249 (491)
T 4gc0_A          201 YMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL------------------------------A  249 (491)
T ss_dssp             HHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------H
T ss_pred             HHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCch------------------------------h
Confidence            655555443333222 222223211100000001111111100000000                              0


Q ss_pred             chhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHH-HHHHHHHHHHHHHHhccccceeeeeecccccccccc
Q 007736          299 QFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIR-MLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSF  377 (591)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  377 (591)
                      .....+......+        .++...    .......++... ....+............+.+.+.... ..+      
T Consensus       250 ~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------  310 (491)
T 4gc0_A          250 TQAVQEIKHSLDH--------GRKTGG----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL-GAS------  310 (491)
T ss_dssp             HHHHHHHHHHHHH--------HHHHTT----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-SCC------
T ss_pred             HHHHHHHHHHHHh--------hhhhhh----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc-CCC------
Confidence            0000000000000        000000    000000111111 11111111110000011111111100 000      


Q ss_pred             ccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007736          378 EIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDP  457 (591)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  457 (591)
                      ............+..++...+..++.+|.+||           +.+..+..+++++++.++....               
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~---------------  364 (491)
T 4gc0_A          311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFY---------------  364 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHh---------------
Confidence            11111222233344455555666666666555           4567777777777776665421               


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHH-hhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccc
Q 007736          458 TAEIPLSVFWLVPQFFLVGAGEAFT-YIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVTGDKKPWLA  536 (591)
Q Consensus       458 ~~~~~~~~~~li~~~~l~g~g~~~~-~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~  536 (591)
                         ...+.+..++..++...+.... .|..+.+..|.+|.+.|++++|+.+..+.+++++++.+.+.+.+..     |..
T Consensus       365 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-----~~~  436 (491)
T 4gc0_A          365 ---TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-----WLV  436 (491)
T ss_dssp             ---TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-----HHH
T ss_pred             ---cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence               1112222233333333333332 3667789999999999999999999999999999999988775321     110


Q ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 007736          537 DNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDKRLAEE  579 (591)
Q Consensus       537 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  579 (591)
                      ...   .....|++++++++++.++.+++.||+|+|+.||+|+
T Consensus       437 ~~~---~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~  476 (491)
T 4gc0_A          437 AHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA  476 (491)
T ss_dssp             HHH---TTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred             hhh---hhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence            000   1123578899999999999999999999999998775

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=3.2e-25  Score=236.61  Aligned_cols=359  Identities=11%  Similarity=0.058  Sum_probs=236.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           29 GGWTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      +.++.+..+....++.........+.+|. +.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence            44556666666677777776666665555 6778999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++.+++......                     .+++.++++|++.|++.+...+...++++|++|+++      |++
T Consensus       101 ~~~~~~~~~~~~~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  153 (438)
T 3o7q_A          101 YALGAALFWPAAEI---------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF  153 (438)
T ss_dssp             HHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred             HHHHHHHHHhcccc---------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence            99999988332111                     488899999999999999999999999999999999      999


Q ss_pred             hhhhhHHHHhhchhhhhhhhhhhc-cccc-------------------------cchhHHHHHHHHHHHHHHHHhcC-Cc
Q 007736          189 FFNWFFFFISIGSLAAVTVLVYIQ-DNLG-------------------------REWGYGICACAIVFGLVVFLSGT-RR  241 (591)
Q Consensus       189 ~~~~~~~~~~ig~~~~p~i~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~  241 (591)
                      ++++.+.+.++|..++|.+++.+. +..+                         |++.|++.++..++..+.++... ++
T Consensus       154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~  233 (438)
T 3o7q_A          154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA  233 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999988 5554                         89998776655444443333321 11


Q ss_pred             eeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCcccccc
Q 007736          242 YRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVV  321 (591)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (591)
                      .+.+++++++                                           +...                       
T Consensus       234 ~~~~~~~~~~-------------------------------------------~~~~-----------------------  247 (438)
T 3o7q_A          234 LQSDNHSDAK-------------------------------------------QGSF-----------------------  247 (438)
T ss_dssp             CTTTCCCCSS-------------------------------------------TTSH-----------------------
T ss_pred             cccccccccc-------------------------------------------ccch-----------------------
Confidence            1000000000                                           0000                       


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhh
Q 007736          322 INKWNLATLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDR  401 (591)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  401 (591)
                      +.+++...    ++.+........++..........+.+.++.....+.+      ....+.......+..+++.++.++
T Consensus       248 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~  317 (438)
T 3o7q_A          248 SASLSRLA----RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTW  317 (438)
T ss_dssp             HHHHHHHT----TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHH----hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000    00011111122222222233333333333121111111      111233344444555566666666


Q ss_pred             hhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 007736          402 IIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAF  481 (591)
Q Consensus       402 ~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~  481 (591)
                      +.+|+.+|           +.+.++.++.+++++++...                     + +. +.+..+++.+++.+.
T Consensus       318 l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~-~~-~~~~~~~~~g~~~~~  363 (438)
T 3o7q_A          318 LISRFAPH-----------KVLAAYALIAMALCLISAFA---------------------G-GH-VGLIALTLCSAFMSI  363 (438)
T ss_dssp             HHHHSCHH-----------HHHHHHHHHHHHHHHHHHHC---------------------C-HH-HHHHHHHHHHHHHTT
T ss_pred             HHHHhcch-----------HHHHHHHHHHHHHHHHHHHc---------------------C-Cc-HHHHHHHHHHHHHHH
Confidence            66554443           45667777777766665542                     1 12 223445777888888


Q ss_pred             HhhhhheeecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007736          482 TYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVSLVHKVT  528 (591)
Q Consensus       482 ~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~  528 (591)
                      ..|..+++..+..|++ ++.+.++.. ...+++.+++.+.|++.+..
T Consensus       364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            8899999989999977 899988877 67799999999999988653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=9.1e-24  Score=221.01  Aligned_cols=166  Identities=14%  Similarity=0.075  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q 007736           35 AMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVT  114 (591)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  114 (591)
                      +.+.+..++.........+.+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            445566677777777777777765 567999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhH
Q 007736          115 ILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFF  194 (591)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (591)
                      ++.++                        ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+
T Consensus        81 ~~~~~------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  130 (375)
T 2gfp_A           81 VAVTT------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN  130 (375)
T ss_dssp             HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred             HHHHh------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence            98887                        588899999999999999999999999999999998      999999999


Q ss_pred             HHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHH
Q 007736          195 FFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGL  232 (591)
Q Consensus       195 ~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~  232 (591)
                      ...++|..++|.+++++.+..||++.|++.++..++..
T Consensus       131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A          131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            99999999999999999998899999987776544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=3.7e-23  Score=220.39  Aligned_cols=392  Identities=10%  Similarity=-0.022  Sum_probs=221.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAA  111 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i  111 (591)
                      |+++......++...++....+++|.|+++++|++..+.+++.+.+.+++.++++++|+++||+ ||||++.++..+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4567677777777777777888999999999999999999999999999999999999999998 999999988877655


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHH-HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          112 GVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQL-VVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +...+......                     ... ..+..++++.+++.+...+...+...++.++..    +.++..+
T Consensus        86 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~  140 (417)
T 2cfq_A           86 MFAPFFIFIFG---------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEF  140 (417)
T ss_dssp             CHHHHHHHTHH---------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCH
T ss_pred             HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccch
Confidence            33222110000                     011 012334455555544444333444444333221    1156677


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCC
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL  270 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (591)
                      +..+...++|..++|.+++++.+ .+|++.|++.++..++..+. ....++   ++++..+                  .
T Consensus       141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~-~~~~~~---~~~~~~~------------------~  197 (417)
T 2cfq_A          141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVL-LFFAKT---DAPSSAT------------------V  197 (417)
T ss_dssp             HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHH-SCSSCC---CCSCSSC------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH-HHHcCc---ccccccc------------------c
Confidence            77777888999999999998876 58999988766543322222 221111   1110000                  0


Q ss_pred             CCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHH-HHHH
Q 007736          271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPI-WATT  349 (591)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  349 (591)
                      .+         +     . . .+ .+...  .                    ..+.    +..++ +.+...... +...
T Consensus       198 ~~---------~-----~-~-~~-~~~~~--~--------------------~~~~----~~~~~-~~~~~~~~~~~~~~  233 (417)
T 2cfq_A          198 AN---------A-----V-G-AN-HSAFS--L--------------------KLAL----ELFRQ-PKLWFLSLYVIGVS  233 (417)
T ss_dssp             SS---------S-----S-S-SC-CCCCC--H--------------------HHHH----HHTTC-HHHHHHHHHHHHHH
T ss_pred             cc---------c-----c-c-cc-ccccc--H--------------------HHHH----HHhcC-CchhhHHHHHHHHH
Confidence            00         0     0 0 00 00000  0                    0000    00001 112111111 1111


Q ss_pred             HHHHHHhccccceeeeeecccccccccccccc---ccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHH
Q 007736          350 IIFWTVYAQMTTFSVSQATTMNRHIGSFEIPG---ASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVG  426 (591)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g  426 (591)
                      ..++...++.+.++...   .+..    +...   +....++.+...++..+.+++.+|+.+|           +.+.++
T Consensus       234 ~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~  295 (417)
T 2cfq_A          234 CTYDVFDQQFANFFTSF---FATG----EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLA  295 (417)
T ss_dssp             HHHHHHHHHHHHHHHHT---SSSH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---Hhcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHH
Confidence            22222222222222110   1100    0011   1223333334445556666666555444           446667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH-
Q 007736          427 LVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL-  505 (591)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl-  505 (591)
                      ..+.+++++.+...                      .+.+.+++..++.+++.....+..+.++.|..|++.||++.|+ 
T Consensus       296 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T 2cfq_A          296 GTIMSVRIIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HHHHHHHHHHHTTC----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            76666665544321                      1333444455566666666667778899999999999999999 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007736          506 FLSTLSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYV  570 (591)
Q Consensus       506 ~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  570 (591)
                      ++....+|+.+++.+.|++.+..+              +...|.+.+++++++.++.++..++.+
T Consensus       354 ~~~~~~lg~~~gp~l~G~l~~~~g--------------~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          354 FCFFKQLAMIFMSVLAGNMYESIG--------------FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HTTTHHHHHHHHTHHHHTHHHHSH--------------HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHhHHHHHhhhhHHHHHHhcC--------------cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            488889999999999998875321              334677777777777766555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=1.4e-13  Score=146.70  Aligned_cols=178  Identities=15%  Similarity=0.136  Sum_probs=149.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhc--hhHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFL--GRYLTIAIFATV  108 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~--Grk~~~~~~~~~  108 (591)
                      .+.++...+..++....++++..++|.|+++.+|++..+.+++.+...++..++.++.|+++|| +  |||+.+.++..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            3577888888899999999999999999998899999999999999999999999999999999 5  888888877666


Q ss_pred             HH-HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          109 QA-AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       109 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      .. ++.+++.+.   +                   ..+...+.+..++.|++.+...+...+++.|.+|+++      |+
T Consensus       330 ~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  381 (451)
T 1pw4_A          330 LVTIATIVYWMN---P-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG  381 (451)
T ss_dssp             HHHHHHHHTTSC---C-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HH
T ss_pred             HHHHHHHHHHHh---c-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hh
Confidence            55 444444332   1                   0255666777788888888888888899999999998      99


Q ss_pred             hhhhhhHHHHhh-chhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHh
Q 007736          188 NFFNWFFFFISI-GSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLS  237 (591)
Q Consensus       188 ~~~~~~~~~~~i-g~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  237 (591)
                      +++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+.
T Consensus       382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 99999999999999999999998887776666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.41  E-value=1.9e-12  Score=137.43  Aligned_cols=168  Identities=16%  Similarity=0.096  Sum_probs=137.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTY-LTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQ  109 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~  109 (591)
                      .+.++...+..++.....+.+..+++.| +++.+|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3567777788888888888999999999 8888899999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchh
Q 007736          110 AAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNF  189 (591)
Q Consensus       110 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  189 (591)
                      +++.+++.+.                        .+... .+..++.+++.+...+...++..|.+|++       ++.+
T Consensus       336 ~~~~~~~~~~------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~  383 (438)
T 3o7q_A          336 MALCLISAFA------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYG  383 (438)
T ss_dssp             HHHHHHHHHC------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHH
T ss_pred             HHHHHHHHHc------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccch
Confidence            8887777664                        23333 33447788888888899999989998844       4555


Q ss_pred             hhhhHHHHhhchhhhhhhhhhhccccc-cchhHHHHHHHHHHHH
Q 007736          190 FNWFFFFISIGSLAAVTVLVYIQDNLG-REWGYGICACAIVFGL  232 (591)
Q Consensus       190 ~~~~~~~~~ig~~~~p~i~~~l~~~~g-~~~~f~~~~~~~~~~~  232 (591)
                      .++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..
T Consensus       384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            56655 566999999999999999998 9999987765544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.33  E-value=2.6e-12  Score=136.30  Aligned_cols=178  Identities=10%  Similarity=0.016  Sum_probs=130.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---ChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHL---GNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV  108 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~  108 (591)
                      +.++...+..++....++....++|.|+.+.++.   +....+...+...++..++.++.|+++||+ |||+++.++..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            4455555555555556666667789898766653   234556777777788889999999999998 999999888877


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccch
Q 007736          109 QAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTN  188 (591)
Q Consensus       109 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  188 (591)
                      .+++.++.++.                        .+...+.+..++.+++.+...+....+++|.+|++.      |++
T Consensus       299 ~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~  348 (417)
T 2cfq_A          299 MSVRIIGSSFA------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT  348 (417)
T ss_dssp             HHHHHHHHTTC------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred             HHHHHHHHHHh------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence            77765555432                        244455555666666666555666789999999988      999


Q ss_pred             hhhh-hHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCC
Q 007736          189 FFNW-FFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       189 ~~~~-~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  240 (591)
                      +.++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.+..+...+
T Consensus       349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9998 588888999999999999998888888888877766666655444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.12  E-value=1.2e-10  Score=125.72  Aligned_cols=186  Identities=9%  Similarity=-0.011  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHH-----HHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIA-----IFAT  107 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~-----~~~~  107 (591)
                      ..+.+.+..++....+.....+++.|+.+.++.+..+.+.+.+...++..++.++.|+++||+ |||+...     ++..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            345555566666667777788899999988888877888888888999999999999999997 9876544     6666


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccc
Q 007736          108 VQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMT  187 (591)
Q Consensus       108 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  187 (591)
                      +.+++.+++........               .....+...+.+..++.+++.+...+...+++.|.+|++.      |+
T Consensus       363 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g  421 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS  421 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred             HHHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence            66666665555321000               0000245556677788899999988999999999999999      99


Q ss_pred             hhhhhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCc
Q 007736          188 NFFNWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRR  241 (591)
Q Consensus       188 ~~~~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  241 (591)
                      ++.++++...++|..++|.+.+++.+. ++...|.+.+...+++.+..+...++
T Consensus       422 ~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          422 QMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988764 56667777766665655555554444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.02  E-value=5.4e-09  Score=112.52  Aligned_cols=186  Identities=11%  Similarity=0.045  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHH
Q 007736           33 SAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAG  112 (591)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~  112 (591)
                      .........++.+...+....+..+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG  355 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence            344444444444444444444455556667788888877777778889999999999999998 9999999998888887


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhh
Q 007736          113 VTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNW  192 (591)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  192 (591)
                      .+.++.......                  ......+.+..+..+++. +..+..+.+.+|.+|.+.      |+++.++
T Consensus       356 ~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~  410 (491)
T 4gc0_A          356 MFSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAI  410 (491)
T ss_dssp             HHHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred             HHHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence            776665432110                  012222222222223332 334667789999999999      9999999


Q ss_pred             hHHHHhhchhhhhhhhhhhcc------ccccchhHHHHHHHHHHHHHHHHhcCCceee
Q 007736          193 FFFFISIGSLAAVTVLVYIQD------NLGREWGYGICACAIVFGLVVFLSGTRRYRF  244 (591)
Q Consensus       193 ~~~~~~ig~~~~p~i~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  244 (591)
                      .+....+++.+++.+.+.+.+      ..++...|++.+++.+++.++.+++.||.+.
T Consensus       411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            999999999999888776644      2356667777777666777666676776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.94  E-value=2.3e-10  Score=118.83  Aligned_cols=164  Identities=11%  Similarity=-0.012  Sum_probs=128.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHH-HH
Q 007736           32 TSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATV-QA  110 (591)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~-~~  110 (591)
                      +.++...+..++.....+....++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ ||+  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            5677777888888888899999999999988999999999999999999999999999999997 872  2233322 22


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      .+..+......                    ...+.+.+.+..++.+++.+...+...++..|.+| ++      |+++.
T Consensus       276 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~  328 (375)
T 2gfp_A          276 AGLLMWIPDWF--------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG  328 (375)
T ss_dssp             TSSSSSHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred             HHHHHHHHhhh--------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence            23222111100                    00255666677888899999999999999999988 66      99999


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHH
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICA  225 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~  225 (591)
                      ++.+...++|..++|.+.+.+.+..+|...+++..
T Consensus       329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999999999999999999988777877766544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.12  E-value=4.5e-06  Score=90.44  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             ccccccchhhhhhhhhhhhhhhhhh-hhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007736          382 ASLTFFFVGSILLTVPVYDRIIVPI-ARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAARSHGLTNDPTAE  460 (591)
Q Consensus       382 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  460 (591)
                      +.+.+...++..++.++.+++.+|+ +||           +.+.++.++.+++.+++...                    
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------  105 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF--------------------  105 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3344455556666677777777655 444           55777888888877776652                    


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 007736          461 IPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGL---FLSTLSLGFFVSSLLVSLVHKVTGDKKPWLAD  537 (591)
Q Consensus       461 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl---~~~~~~lg~~lg~~l~~~i~~~~~~~~~w~~~  537 (591)
                       +.+.+.+++..++.|++.+...|...+++.|.+|++.|++..+.   ++....+|..+++.+.+++.+..    +|   
T Consensus       106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----g~---  177 (524)
T 2xut_A          106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----GA---  177 (524)
T ss_dssp             -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----CH---
T ss_pred             -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cH---
Confidence             22556667778899999999999999999999999999877666   88888999999999988876432    23   


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHH
Q 007736          538 NLNQGRLYDFYWLLAILSALNFVIY  562 (591)
Q Consensus       538 ~~~~~~~~~~f~~~~~~~~v~~~~~  562 (591)
                             ...|++.++.+++..++.
T Consensus       178 -------~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          178 -------AVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             -------HHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHH
Confidence                   345666666655555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	591
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.39
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-27  Score=251.77  Aligned_cols=387  Identities=8%  Similarity=-0.040  Sum_probs=233.2

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007736           52 AVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCN  131 (591)
Q Consensus        52 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  131 (591)
                      ...+.++++ ++|++.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.++++++....        
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  113 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------  113 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence            344556776 5899999999999999999999999999999998 999999999999999998888753211        


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhhHHHHhhchhhhhhhhhhh
Q 007736          132 LNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWFFFFISIGSLAAVTVLVYI  211 (591)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~i~~~l  211 (591)
                                  .+...+++.|++.|++.+...+...++++|++|+++      |++++++.+.+.++|..++|.+++.+
T Consensus       114 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         114 ------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             ------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             ------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhH
Confidence                        356788999999999999999999999999999999      99999999999999999999988876


Q ss_pred             ccc-cccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCCCCCCCCcccccCCccccccc
Q 007736          212 QDN-LGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDLPSDPSMFFNIDDIPVEGKKT  290 (591)
Q Consensus       212 ~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (591)
                      ... .+|++.|++..+..++..+..+...++.+++.+....                    +.    .+  +        
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~----~~--~--------  221 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--------------------EE----YK--N--------  221 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--------------------TT----TC--C--------
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh--------------------hh----hh--h--------
Confidence            654 4799999887766555554444444332211111000                    00    00  0        


Q ss_pred             cccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHH-HHHHHHHHHHHHHHHhccccceeeeeecc
Q 007736          291 KQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVI-RMLPIWATTIIFWTVYAQMTTFSVSQATT  369 (591)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (591)
                          +..+      ......+.        .....+. ........+.+. .....++.....+....+.+.++.. ...
T Consensus       222 ----~~~~------~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  281 (447)
T d1pw4a_         222 ----DYPD------DYNEKAEQ--------ELTAKQI-FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKH  281 (447)
T ss_dssp             ----C---------------------------CCTHH-HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSC
T ss_pred             ----hccc------chhhcccc--------ccchhhH-HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccc-ccc
Confidence                0000      00000000        0000000 000000011111 1112222222222332222222211 111


Q ss_pred             ccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007736          370 MNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLSIFAMVAAALCEIKRLRAAR  449 (591)
Q Consensus       370 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~  449 (591)
                      .+      ............+..+++..+.+++.+|..++.        ..........+..++.+.+...         
T Consensus       282 ~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------  338 (447)
T d1pw4a_         282 FA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--------RGATGVFFMTLVTIATIVYWMN---------  338 (447)
T ss_dssp             CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHHTTSC---------
T ss_pred             cc------cchhhhhhhcchhhhhhhhhhhhhhhhhccccc--------cccccchhHHHHHHHHHHHHhc---------
Confidence            11      111233344444555566666666665554431        1111112222222221111110         


Q ss_pred             hcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Q 007736          450 SHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSL-GFFVSSLLVSLVHKVT  528 (591)
Q Consensus       450 ~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~~~~~~l-g~~lg~~l~~~i~~~~  528 (591)
                                 ...+.+..++.+++.+++.....+..+.+..|.+|++.||+++|+.+....+ |..+++.+.+++.+..
T Consensus       339 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~  407 (447)
T d1pw4a_         339 -----------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  407 (447)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                       1234555566667778877777788888999999999999999999888777 4566888989887654


Q ss_pred             CCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 007736          529 GDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARW  568 (591)
Q Consensus       529 ~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  568 (591)
                      +              ....|++.++.++++.++.+++.++
T Consensus       408 g--------------~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         408 G--------------WDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             C--------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2              2345666666667766655555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.1e-24  Score=221.35  Aligned_cols=402  Identities=9%  Similarity=-0.040  Sum_probs=236.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .|++|.+.+..++...+.....+.+|.|+++++|+|.++.+++.+.+.++..++.++.|+++||+ ||||+++++..+..
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            45788899999998888888899999999999999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      ++..++......+                    ......++.+.+.+.+.+...........+..+++.    .++....
T Consensus        85 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  140 (417)
T d1pv7a_          85 VMFAPFFIFIFGP--------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEF  140 (417)
T ss_dssp             HTHHHHHHHTHHH--------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCH
T ss_pred             HHHHHHHHhhhhh--------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHH
Confidence            8888877762211                    112223344444444444433333333333222221    1256666


Q ss_pred             hhhHHHHhhchhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCceeeccCCCChhhHHHHHHHHHHhhcccCC
Q 007736          191 NWFFFFISIGSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFLSGTRRYRFKKLVGSPLTQIASVFVVAWRKRHLDL  270 (591)
Q Consensus       191 ~~~~~~~~ig~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (591)
                      +........+..++|.+++.+.+.. |+..+........+..+..++..++.+.+++++++.+                 
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  202 (417)
T d1pv7a_         141 GRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-----------------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-----------------
T ss_pred             HHHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-----------------
Confidence            7777778888999999998887654 4444444443333333333333333221111111000                 


Q ss_pred             CCCCCCcccccCCccccccccccCCCCcchhhhHHhhhccCCCCCccccccccccccCccchhHHHHHHHHHHHHHHHHH
Q 007736          271 PSDPSMFFNIDDIPVEGKKTKQRLPHTKQFRFLDKAAIFKDSDMSNSTTVVINKWNLATLTDVEEVKMVIRMLPIWATTI  350 (591)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (591)
                                            .........  ....                .+   ...  .................
T Consensus       203 ----------------------~~~~~~~~~--~~~~----------------~~---~~~--~~~~~~~~~~~~~~~~~  237 (417)
T d1pv7a_         203 ----------------------ANHSAFSLK--LALE----------------LF---RQP--KLWFLSLYVIGVSCTYD  237 (417)
T ss_dssp             ----------------------SCCCCCCHH--HHHH----------------HT---TSS--HHHHHHHHHHHHHHHHH
T ss_pred             ----------------------hhccccccc--cccc----------------cc---ccc--cccchhhhhHHHHHHHH
Confidence                                  000000000  0000                00   000  00111111111111111


Q ss_pred             HHHHHhccccceeeeeeccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhcCCCCCCCchhHHHHHHHHH
Q 007736          351 IFWTVYAQMTTFSVSQATTMNRHIGSFEIPGASLTFFFVGSILLTVPVYDRIIVPIARKVFKTPQGLTPLQRIGVGLVLS  430 (591)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~~~  430 (591)
                      ............... ....+      ............+...+...+.+++.+|..+           .+.+.++.++.
T Consensus       238 ~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~-----------~~~~~~~~~~~  299 (417)
T d1pv7a_         238 VFDQQFANFFTSFFA-TGEQG------TRVFGYVTTMGELLNASIMFFAPLIINRIGG-----------KNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHTTSSS-CHHHH------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH-----------HHHHHHHHHHH
T ss_pred             hhhcccccccccccc-ccccc------hhhhcccccccccccccchhhhhhhhccccc-----------ccchhhhHHHH
Confidence            111111100000000 00000      0001112222333334444455555533332           35577777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhheeecccCCcchhHHHHHHH-HHH
Q 007736          431 IFAMVAAALCEIKRLRAARSHGLTNDPTAEIPLSVFWLVPQFFLVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLF-LST  509 (591)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~gl~-~~~  509 (591)
                      +++.+.+..                      ..+.+.+++..++.+++.+...+...+++.|.+|++.|+++.|+. +..
T Consensus       300 ~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (417)
T d1pv7a_         300 SVRIIGSSF----------------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF  357 (417)
T ss_dssp             HHHHHHHHT----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTT
T ss_pred             HHhhhcccc----------------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHH
Confidence            777666654                      235566677788899999999999999999999999999999985 566


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007736          510 LSLGFFVSSLLVSLVHKVTGDKKPWLADNLNQGRLYDFYWLLAILSALNFVIYLAFARWYVYKDK  574 (591)
Q Consensus       510 ~~lg~~lg~~l~~~i~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~  574 (591)
                      ..+|..+++.+.|++.+..+              ....|++.++++++..++.++..++.++.+.
T Consensus       358 ~~~g~~i~~~~~G~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  408 (417)
T d1pv7a_         358 KQLAMIFMSVLAGNMYESIG--------------FQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence            78999999999999986543              3456778888888887777777665554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=6.6e-13  Score=138.11  Aligned_cols=180  Identities=14%  Similarity=0.051  Sum_probs=140.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHH
Q 007736           31 WTSAAMILGGEACERLTTLGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQA  110 (591)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~  110 (591)
                      .+.++......++.....++...+++.|+.+.++.+..+.+.......++..++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            45778888888899999999999999999999999999999999999999999999999999997 87665444443333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhh
Q 007736          111 AGVTILTISTIIPSLRPPKCNLNHGQSCIQASGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFF  190 (591)
Q Consensus       111 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  190 (591)
                      +...........                   ...+.....+..++.|++.++..+....+..|.+|++.      |+++.
T Consensus       327 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~  381 (447)
T d1pw4a_         327 LVTIATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA  381 (447)
T ss_dssp             HHHHHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHH
T ss_pred             HHHHHHHHHHhc-------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            332222222110                   11356666677777888888888888899999999998      99999


Q ss_pred             hhhHHHHhh-chhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 007736          191 NWFFFFISI-GSLAAVTVLVYIQDNLGREWGYGICACAIVFGLVVFL  236 (591)
Q Consensus       191 ~~~~~~~~i-g~~~~p~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  236 (591)
                      ++.+...++ |..++|.+.|++.+.+||+..|++...+.+++.+++.
T Consensus       382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            998888777 4567899999999999999998877666555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=5.4e-13  Score=135.87  Aligned_cols=148  Identities=10%  Similarity=0.031  Sum_probs=123.6

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccc
Q 007736           62 TMHLGNASAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFATVQAAGVTILTISTIIPSLRPPKCNLNHGQSCIQA  141 (591)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (591)
                      ..+.+....+...+...++..++..+.|++.||+ |||+.+.++..+.+++.++..+.                      
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~----------------------  309 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA----------------------  309 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc----------------------
Confidence            3345556777777888889999999999999998 99999999999888888877765                      


Q ss_pred             chhHHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhccchhhhhh-HHHHhhchhhhhhhhhhhccccccchh
Q 007736          142 SGMQLVVLYIALYLTALGTGGLKSSVSGFGSDQFDDSDPQERNQMTNFFNWF-FFFISIGSLAAVTVLVYIQDNLGREWG  220 (591)
Q Consensus       142 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~~p~i~~~l~~~~g~~~~  220 (591)
                        .+.+.+.+..++.+++.+...+...+++.|.+|++.      |++..++. +....+|..++|.+.|++.|.+|++..
T Consensus       310 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~  381 (417)
T d1pv7a_         310 --TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA  381 (417)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence              467777888888999999999999999999999999      99999984 566779999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCC
Q 007736          221 YGICACAIVFGLVVFLSGTR  240 (591)
Q Consensus       221 f~~~~~~~~~~~~~~~~~~~  240 (591)
                      |++.+++.++..++.++..+
T Consensus       382 ~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         382 YLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            98877666665555544444