Citrus Sinensis ID: 007740

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
Protein Sequence
MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDAEVSSDECTTGRSTSQGSLSSCSSRGVIDVAMIPLIRTEGVSTLPPSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHccccEEEEEEcccccHHHHHcccccHHHHHHHHHcccccEEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccEEEEEcccEEEEEEccccccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHccccEEEEEEEcccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccccHHHccccccccHHHHHHccccccEEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHcccHHccccccccccEEEEEcccccEEEEEEcccHcccHHHHHHHHHHHHHccccccEEEEEc
Coil and Loop (DISEMBL)
malvssvpaiaqgvdsvrcpdiqmagitssrrgiveepvasvIEDKIYVAVAKQVKESKSVLLWALQnsggkriciihvhtpaqmipvmgtkfpassleeEKVQAYREIERQDMHNHLDMCLLICRQMGvraekldtesesTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVrqqapaschiWFICngnliytregsldgidpeisspsfqashntenrhpnclrsqsvvlrhnrpmkltnpvqDLFHRVRsmnfdrnvgnvmtsqdsigglsspasrsdaevssdecttgrstsqgslsscssrgvidvamiplirtegvstlppskedlqssppsvldgsvddNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSrkeasssshmpqffsdfsfseiegathnfdpslkigeggygSIYKGLLRHMQVAIKMlhphslqgpsefqqevgAYESFIFHFNLVDSFI
Flexible Loop (DISEMBL)
malvssvpaiaqgvdsvrcpDIQMagitssrrgivEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKldtesestEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQAshntenrhpnCLRSqsvvlrhnrpmKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDAEVSSdecttgrstsqgslsscssrGVIDVAMIPLIRTEGVstlppskedlqssppSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEAlrrgkaekdaiesirrakaseslyaeELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKsrkeasssshmpqFFSDFSFSEIEGAThnfdpslkigEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSFI
Low Complexity Region (SEG)
MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAAdkhykkkmmdlkskkAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDAEVSSDECttgrstsqgslsscssrgVIDVAMIPLIRTEGVSTLPPSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSFI
Disordered region (IsUnstruct)
*********IAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFP**********AYREIERQDMHNHLDMCLLICRQMGVRA***********KGILELISHYGIRKLVMGAAADKHYKKK********AISVRQQAPASCHIWFICNGNLIYTREGS*********************************************VQDLFHRVRSM****************************************************GVIDVAMIPLIRT*******************************************************************************************************************************************************************************************DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVD***
Disordered Region (DISOPRED)
*********************************************KIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIP*********************IERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADK*****************RQQAPASCHIWFICNGNLIY********************************************************************************************************************************************************************************************************************EALANGKLEL***************************************QKIISAVELL*************************************PQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAI****************EVGAYESFIFHFNLVDSFI
Disordered Region (DISEMBL)
MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAE*********EKGILELISHYGIRKLVMGAAADKHYKKKMM**************PASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQ*************************************SRGVIDVAMIPLIRTEGVST***************LDGSVDDNLYDQLAQ************************DAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE******************************MPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSFI
Disordered Region (DISPRO)
*****************************************VIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREG***************************************************************************************************************************************************DDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDAEVSSDECTTGRSTSQGSLSSCSSRGVIDVAMIPLIRTEGVSTLPPSKEDLQSSPPSVLDGSVxxxxxxxxxxxxxxxxxxxxxxxxxALRRGKAEKDAIESIRRAKASESLYAEELKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSFI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	591	2.2.26 [Sep-21-2011]
Q8GUH1	834	U-box domain-containing p	yes	no	0.895	0.634	0.478	1e-134
Q8GZ84	435	U-box domain-containing p	no	no	0.306	0.416	0.476	3e-42
Q683D5	400	U-box domain-containing p	no	no	0.262	0.387	0.435	2e-34
Q94A51	805	U-box domain-containing p	no	no	0.314	0.231	0.382	5e-34
P0C6E7	568	Putative U-box domain-con	no	no	0.568	0.591	0.314	1e-33
Q9LQ92	308	U-box domain-containing p	no	no	0.296	0.568	0.416	1e-26
Q8GXQ7	365	U-box domain-containing p	no	no	0.197	0.320	0.404	4e-16
C0LGG9	1035	Probable LRR receptor-lik	no	no	0.147	0.084	0.434	4e-10
C0LGG8	1038	Probable LRR receptor-lik	no	no	0.147	0.083	0.434	4e-10
C0LGH2	1032	Probable LRR receptor-lik	no	no	0.116	0.066	0.478	2e-09

>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2

 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/595 (47%), Positives = 385/595 (64%), Gaps = 66/595 (11%)

Query: 1   MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKS 60
           MALVS +PA+ +   S+R   I   G  SSR GI++EPV+ +I++KI+VAV K V +SKS
Sbjct: 1   MALVSPIPAMGERAGSMRFHGIGSPGSRSSRSGIMDEPVSRLIDEKIFVAVDKHVAKSKS 60

Query: 61  VLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM 120
            L+WALQN+GGK+IC+IHVH P+QMIP+MG KFP  +++EE+V+ +RE ER+ +H  LD 
Sbjct: 61  TLIWALQNTGGKKICLIHVHQPSQMIPLMGAKFPVGAVKEEEVRVFREKEREKVHMILDD 120

Query: 121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKA 180
            L IC+Q GVRAEK+  E ES E GI++LIS  GIRKLVMGAAAD+HY ++M DLKS+KA
Sbjct: 121 YLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMGAAADRHYSRRMTDLKSRKA 180

Query: 181 ISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPS--------FQASHNTENRHP 232
           I VR++AP  C IWF C G LI+TRE ++D  + E +SP          Q     E+ H 
Sbjct: 181 IFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYASPRPSISASDLLQTFSTPESEHQ 240

Query: 233 NCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDA 292
           +  R QS           T+ VQ L            V N  +++ S          SD 
Sbjct: 241 HISRVQS-----------TDSVQQL------------VSNGSSTEQS-------GRVSDG 270

Query: 293 EVSSDECTTGRSTSQGSLSSCSSRGVIDVAMIPLIRTEGVSTLPPSKEDLQSSPPSVLDG 352
            +++DE       S GS                     G +T+  S     SS P   DG
Sbjct: 271 SLNTDE---EERESDGS------------------EVTGSATVMSSGHSSPSSFP---DG 306

Query: 353 SVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRK 412
            VDD+   ++ +A +EA +S++EAF E LRR KAEK+A+++IRRAK SES Y+EELKRRK
Sbjct: 307 -VDDSFNVKIRKATSEAHSSKQEAFAETLRRQKAEKNALDAIRRAKQSESAYSEELKRRK 365

Query: 413 EFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVE 472
           + E A+A  K     +K + + +MEELQ A+ QK++LESQIA+SD T ++L QK+  AV+
Sbjct: 366 DTEIAVAKEKERFITIKNEQEVIMEELQSAMAQKAMLESQIAKSDGTMEKLNQKLDIAVK 425

Query: 473 LLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDP 532
           LLQ  + E++ELQ ERD+A++EAEELR   +  +S+  +PQ+F+DFSFSEIE AT++FD 
Sbjct: 426 LLQKLRDEREELQTERDRALREAEELRSHAE--TSTLQLPQYFTDFSFSEIEEATNHFDS 483

Query: 533 SLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           +LKIGEGGYGSIY GLLRH QVAIKML+P+S QGP E+QQEV    S + H N++
Sbjct: 484 TLKIGEGGYGSIYVGLLRHTQVAIKMLNPNSSQGPVEYQQEVDVL-SKMRHPNII 537

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2

 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 14/195 (7%)

Query: 16  SVRCPDIQMAGITSSRR--GI-VEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGK 72
           +++ P  +M  +  S R  GI + E +    ++KIYVAV ++  ESKS L+WA+QNSGGK
Sbjct: 2   TLKIPIQEMVKMVGSLRSHGIDIPESMEINKKEKIYVAVTEKDLESKSSLVWAIQNSGGK 61

Query: 73  RICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRA 132
             CI+HVH P           P     E+K++ YR+ E+   H + +  L ICRQM V A
Sbjct: 62  EFCIVHVHQP----------IPGEMFHEQKLRLYRK-EKDKAHKNSEKYLQICRQMQVTA 110

Query: 133 EKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCH 192
           E +  E++S EKGIL+LIS  G+ KLVMGAAAD+HY  +M DLKSKKAI + ++APA+C 
Sbjct: 111 EIIYIETDSVEKGILQLISQRGVTKLVMGAAADRHYSMRMRDLKSKKAIYIHREAPATCL 170

Query: 193 IWFICNGNLIYTREG 207
           IWF CNG LI +RE 
Sbjct: 171 IWFTCNGYLICSREA 185

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 24/179 (13%)

Query: 42  VIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEE 101
           ++++KIYVAV   +  +KS L+WA+QN+GGK  CI+HVH P                   
Sbjct: 11  LMDEKIYVAVGSDLG-NKSTLVWAIQNTGGKEFCIVHVHQPL------------------ 51

Query: 102 KVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMG 161
               YR+ E++     LD  L  CRQM V AE +  + ES EKGI++LIS   ++KLVMG
Sbjct: 52  ----YRK-EKEKTQKILDKYLQKCRQMQVCAEMIHIKMESVEKGIIQLISERNVKKLVMG 106

Query: 162 AAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPS 220
           AA+D  Y  +M DL S KAI +RQ+APA+C IWF C G L+Y RE  +     E +S S
Sbjct: 107 AASDTRYSMRMADLLSTKAIYIRQEAPATCCIWFTCKGYLVYKRESIMGNTSLEYASTS 165

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1

 Score =  146 bits (368), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 115/188 (61%)

Query: 43  IEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEK 102
           +++ I+VAVA+ V+ SK+ +LWA +N  GK+IC+++VH  A+       K    S ++  
Sbjct: 13  VDETIFVAVAEDVERSKTTVLWAARNFSGKKICLLYVHRTARAASWTHKKLVGGSFKKHD 72

Query: 103 VQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGA 162
           V+    +E+  +   ++  L +  +  ++ +KL    ++ E+ I+ELI+ + I+ LVMGA
Sbjct: 73  VKVIERVEKPKVDELMNSYLQLLSETEIQTDKLCIAGQNIEECIVELIARHKIKWLVMGA 132

Query: 163 AADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQ 222
           A+DKHY  KM DLKSKKAI V ++AP SCHIWF+C G LI+TR  + D  + +   P  Q
Sbjct: 133 ASDKHYSWKMTDLKSKKAIFVCKKAPDSCHIWFLCKGYLIFTRASNDDSNNRQTMPPLVQ 192

Query: 223 ASHNTENR 230
              + E R
Sbjct: 193 LDSDNETR 200

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 189/398 (47%), Gaps = 62/398 (15%)

Query: 45  DKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQ 104
           D ++VAV   V+ES+S LLWAL+N G K++CI+HV+ P    P       A  LEE +  
Sbjct: 10  DVVHVAVKSDVRESRSTLLWALRNLGAKKVCILHVYQPKTASPA------ARKLEELEAI 63

Query: 105 AYREIERQDMHNHLDMCLLICRQMGVRAEKLDT---ESESTEKGILELISHYGIRKLVMG 161
            Y     + +H++ D     C+Q GV  + +     E    ++GILELI    I+KLVMG
Sbjct: 64  MY-----ETLHDYFD----FCQQEGVNEDDIYISCIEMNDVKQGILELIHESKIKKLVMG 114

Query: 162 AAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSF 221
           AA+D HY +KM DLKS+KA  V Q AP+SC + F+C+G+LIYT+E +L+    E  S + 
Sbjct: 115 AASDHHYSEKMFDLKSRKAKYVYQHAPSSCEVMFMCDGHLIYTKEANLEDCMGETESEAG 174

Query: 222 QASHN-TENRHPNC---LRSQSVVL---RHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVM 274
           Q+      +  P C   L S  V     R +R M   N  +D     R+    R +   +
Sbjct: 175 QSKPKLYSSASPKCSAELVSAIVAYIDTRRDRDMLEPNASEDQSESDRNDQLYRQLKQAL 234

Query: 275 TSQDSIGGLSSPASRSDAEVSSDECTTGRSTSQGSLSSCSSRGVIDVAMI---PLIRTEG 331
                   +    S+ +A    +EC         ++ +  S    + AM      +R EG
Sbjct: 235 --------MEVEESKREA---YEECVRRFKAENTAVEAIRSAREYE-AMYNEEAKLRKEG 282

Query: 332 VSTLPPSKEDLQSSPPS-------VLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRG 384
              L   ++ ++ +          +L+G     LY++        E  RR   EE L + 
Sbjct: 283 KEALAKQRKMVEKTKQERDDALIIILNGR---KLYNE--------ELRRRVEAEEMLGKE 331

Query: 385 KAE----KDAIESIRRAKASESLYAEELKRRKEFEEAL 418
           K E    K  IE +R      +LY E+L+ RKE EE++
Sbjct: 332 KEEHERTKKEIEEVRAIVQDGTLYNEQLRHRKEMEESM 369

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1

 Score =  122 bits (305), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 99/185 (53%), Gaps = 10/185 (5%)

Query: 43  IEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEK 102
           +ED IYVAV + V+ESK  LLWAL+N   K+I ++HVH P  +         +S LE+ +
Sbjct: 1   MEDAIYVAVNQDVRESKKTLLWALKNLQVKKIFLLHVHLPFSLTT------SSSRLEQSE 54

Query: 103 VQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDT---ESESTEKGILELISHYGIRKLV 159
           + A ++ E     N L     IC   GV  + +DT         +GI+ELI    I  LV
Sbjct: 55  IDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLV 114

Query: 160 MGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSP 219
           MGAAAD HY +  M + S+KA  V Q AP SC IWFIC G LI  RE S    +P  S  
Sbjct: 115 MGAAADPHYSRG-MSITSRKAEYVSQHAPHSCKIWFICKGKLIKQRERSFYLGNPSDSFS 173

Query: 220 SFQAS 224
            F  S
Sbjct: 174 EFSTS 178

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 4/121 (3%)

Query: 94  PASS-LEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTE---SESTEKGILEL 149
           P+SS LE+ ++ A +E+E+   ++ L     IC   GV  + +D     + S  + I+EL
Sbjct: 3   PSSSGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVEL 62

Query: 150 ISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSL 209
           I    I+KL+MGA AD HY + M+ +   KA  V Q AP  C+IW +CNGNLI TREG  
Sbjct: 63  IYQNNIKKLIMGATADSHYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRF 122

Query: 210 D 210
           +
Sbjct: 123 E 123

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 12/99 (12%)

Query: 490 KAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLL 549
           K V E EELR    +  S          F+  +I+ AT+NFDP  KIGEGG+G +YKG+L
Sbjct: 637 KEVDENEELRGLDLQTGS----------FTLKQIKRATNNFDPENKIGEGGFGPVYKGVL 686

Query: 550 RH-MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
              M +A+K L   S QG  EF  E+G   S + H NLV
Sbjct: 687 ADGMTIAVKQLSSKSKQGNREFVTEIGMI-SALQHPNLV 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 12/99 (12%)

Query: 490 KAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLL 549
           K V E EELR    +  S          F+  +I+ AT+NFDP  KIGEGG+G +YKG+L
Sbjct: 639 KEVDENEELRGLDLQTGS----------FTLKQIKRATNNFDPENKIGEGGFGPVYKGVL 688

Query: 550 RH-MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
              M +A+K L   S QG  EF  E+G   S + H NLV
Sbjct: 689 ADGMTIAVKQLSSKSKQGNREFVTEIGMI-SALQHPNLV 726

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQ-VAIKMLHPHSLQGPSEFQQEVGA 576
           F++SE++ AT +FDPS K+GEGG+G +YKG L   + VA+K+L   S QG  +F  E+ A
Sbjct: 682 FTYSELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVA 741

Query: 577 YESFIFHFNLV 587
             S + H NLV
Sbjct: 742 ISS-VLHRNLV 751

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
359489801	881	PREDICTED: U-box domain-containing prote	0.962	0.645	0.604	0.0
147772798	881	hypothetical protein VITISV_015820 [Viti	0.964	0.646	0.6	0.0
255541604	529	receptor protein kinase, putative [Ricin	0.847	0.947	0.608	1e-178
224064033	809	predicted protein [Populus trichocarpa]	0.856	0.625	0.625	1e-175
87240964	884	Protein kinase; U box [Medicago truncatu	0.967	0.647	0.557	1e-162
357507363	896	U-box domain-containing protein [Medicag	0.967	0.638	0.557	1e-162
356568394	883	PREDICTED: U-box domain-containing prote	0.967	0.647	0.562	1e-161
224127680	810	predicted protein [Populus trichocarpa]	0.847	0.618	0.572	1e-159
356531997	883	PREDICTED: U-box domain-containing prote	0.967	0.647	0.558	1e-158
356522608	879	PREDICTED: U-box domain-containing prote	0.937	0.630	0.544	1e-158

>gi|359489801|ref|XP_002274993.2| PREDICTED: U-box domain-containing protein 33-like [Vitis vinifera] gi|297745303|emb|CBI40383.3| unnamed protein product [Vitis vinifera]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/596 (60%), Positives = 450/596 (75%), Gaps = 27/596 (4%)

Query: 1   MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEE-PVASVIEDKIYVAVAKQVKESK 59
           MA+VS VPAI+Q +D VR  +I ++ + SS   IVEE P+A V+EDKI+VAV K+VKESK
Sbjct: 1   MAVVSPVPAISQQLDHVRLHEIGVSAVMSSTGEIVEEQPLALVVEDKIFVAVGKEVKESK 60

Query: 60  SVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD 119
           S+L+WALQNSGGKRI I+HVH PAQMIP+MG KFPAS L+E++V+AYR++ERQDMH  L+
Sbjct: 61  SILVWALQNSGGKRISIVHVHQPAQMIPIMGGKFPASKLKEQEVKAYRDLERQDMHKILN 120

Query: 120 MCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKK 179
             LLICR+ GVRAEKL  ESE+ EKGILELIS +GI+KLV+GAAADKHY ++M++ KSKK
Sbjct: 121 DYLLICRKAGVRAEKLYIESENVEKGILELISEHGIKKLVVGAAADKHYSRRMLEPKSKK 180

Query: 180 AISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEI-SSPSFQASHNTENRHPNCLRSQ 238
           A  VR +AP  CHIWF+C G+LIYTREGSL+G D E+ + PS QAS N E    N  RS 
Sbjct: 181 AAYVRDKAPLFCHIWFVCRGHLIYTREGSLNGADIELRTPPSQQASPNNETGQSNTFRSM 240

Query: 239 SVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDAEVSSD- 297
           SV L  N P KL NP QDL    R+M+    +  V++S D  GG+S+P SR   E SSD 
Sbjct: 241 SVSLGQNHPSKLVNPGQDL---PRTMSVPVRI-TVLSSPDGTGGVSAPWSRMGREGSSDY 296

Query: 298 -ECTTGRSTSQGS-LSSCSSRGVIDVAMIPLIRTEGVSTL--PPSKEDL-QSSPPSVLDG 352
            +  + RS SQ S  S+CSS       M   +  +G+ +   P +K+ L  SSPPSVL  
Sbjct: 297 WDGISKRSPSQASGFSTCSSGD-----MAGEVNEDGLESRASPVAKQALHHSSPPSVL-- 349

Query: 353 SVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRK 412
             ++N+YDQL QAM EAENSRREAF+E+LRR KAEKDAIE+IRRAK +E  ++EELK R+
Sbjct: 350 --EENIYDQLEQAMVEAENSRREAFQESLRRSKAEKDAIEAIRRAKEAERSFSEELKLRR 407

Query: 413 EFEEAL-ANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAV 471
           + EEAL A GK ELE ++ +  E+MEEL+I+L+ KSLLE+QIA+S+Q  KELE+KII+AV
Sbjct: 408 DIEEALQAQGK-ELESLRNKQQEIMEELKISLNHKSLLENQIADSEQVVKELEEKIIAAV 466

Query: 472 ELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFD 531
           ELLQNYKKE+DELQ+ERD A+K AEEL   +K+ +S+SH PQ+F++FSF+EIE AT NFD
Sbjct: 467 ELLQNYKKERDELQIERDNAIKTAEEL---KKKGASTSHTPQYFAEFSFAEIEKATQNFD 523

Query: 532 PSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           PS+KIGEGGYGSIYKG LRH QVAIKMLH  S QGP+EFQQEV    S + H NLV
Sbjct: 524 PSVKIGEGGYGSIYKGCLRHTQVAIKMLHSDSFQGPTEFQQEVDIL-SKLRHPNLV 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772798|emb|CAN67166.1| hypothetical protein VITISV_015820 [Vitis vinifera]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/595 (60%), Positives = 445/595 (74%), Gaps = 25/595 (4%)

Query: 1   MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEE-PVASVIEDKIYVAVAKQVKESK 59
           MA+VS VPAI+Q +D VR  +I ++ + SS   IVEE P+A V+EDKI+VAV K+VKESK
Sbjct: 1   MAVVSPVPAISQQLDHVRLHEIGVSAVMSSTGEIVEEQPLALVVEDKIFVAVGKEVKESK 60

Query: 60  SVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD 119
           S+L+WALQNSGGKRI I+HVH PAQMIP+MG KFPAS L+E++V+AYR++ERQDMH  L+
Sbjct: 61  SILVWALQNSGGKRISIVHVHQPAQMIPIMGGKFPASKLKEQEVKAYRDLERQDMHKILN 120

Query: 120 MCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKK 179
             +LICR+ GVRAEKL  ESE+ EKGILELIS +GI+KLV+GAAADKHY ++M++ KSKK
Sbjct: 121 DYILICRKAGVRAEKLYIESENVEKGILELISEHGIKKLVVGAAADKHYSRRMLEPKSKK 180

Query: 180 AISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEI-SSPSFQASHNTENRHPNCLRSQ 238
           A  VR +AP  CHIWF+C G+LIYTREGS BG D E+ + PS QAS N E    N  RS 
Sbjct: 181 AAYVRDKAPLFCHIWFVCRGHLIYTREGSXBGADIELRTPPSQQASPNNETGQSNTFRSM 240

Query: 239 SVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDAEVSSD- 297
           SV L  N   KL NP QDL    R+M+    +  V++S D  GG+S+P SR   E SSD 
Sbjct: 241 SVSLGQNHXSKLVNPGQDL---PRTMSVPVRI-TVLSSPDGTGGVSAPWSRMGREGSSDY 296

Query: 298 -ECTTGRSTSQGSLSSCSSRGVIDVAMIPLIRTEGVSTL--PPSKEDL-QSSPPSVLDGS 353
            +  + RS SQ S  S  S G     M   +  +G+ +   P +K+ L  SSPPSVL   
Sbjct: 297 WDGISKRSPSQXSGFSXCSSG----DMAGEVNEDGLESRASPXAKQALHHSSPPSVL--- 349

Query: 354 VDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKE 413
            ++N+YDQL QAM EAENSRREAF+E+LRR KAEK AIE+IRRAK +E  ++EELK R++
Sbjct: 350 -EENIYDQLEQAMVEAENSRREAFQESLRRSKAEKXAIEAIRRAKEAERSFSEELKLRRD 408

Query: 414 FEEAL-ANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVE 472
            EEAL A GK ELE ++ +  E+MEEL+I+L+ KSLLE+QIA+S+Q  KELE+KIISAVE
Sbjct: 409 IEEALQAQGK-ELESLRNKQQEIMEELKISLNHKSLLENQIADSEQVVKELEEKIISAVE 467

Query: 473 LLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDP 532
           LLQNYKKE+DELQ+ERD A+K AEEL   +K+ +S+SH PQ+F++FSF+EIE AT NFDP
Sbjct: 468 LLQNYKKERDELQIERDNAIKTAEEL---KKKGASTSHTPQYFAEFSFAEIEKATQNFDP 524

Query: 533 SLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           S+KIGEGGYGSIYKG LRH QVAIKMLH  S QGPSEFQQEV    S + H NLV
Sbjct: 525 SVKIGEGGYGSIYKGCLRHTQVAIKMLHSDSFQGPSEFQQEVDIL-SKLRHPNLV 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541604|ref|XP_002511866.1| receptor protein kinase, putative [Ricinus communis] gi|223549046|gb|EEF50535.1| receptor protein kinase, putative [Ricinus communis]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 342/562 (60%), Positives = 401/562 (71%), Gaps = 61/562 (10%)

Query: 24  MAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPA 83
           +AG  ++ R IVE  V+ VI++KIYVAV K  K++KS+L+WALQNSGGKRIC++HVH PA
Sbjct: 21  VAGNMAATREIVEGSVSRVIDEKIYVAVGKDFKKNKSLLIWALQNSGGKRICVVHVHQPA 80

Query: 84  QMIPV--MGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESES 141
           QMIP+  MGTKF A+SL+EE+V+AYREIER++M+  LD  LLICRQMGVR EKL  E ES
Sbjct: 81  QMIPLALMGTKFYANSLKEEEVRAYREIERKEMYEMLDDYLLICRQMGVRPEKLHIEMES 140

Query: 142 TEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNL 201
            EKGILELIS +GIRKLVMGAAADK Y K MM++KSKKA+SV  QAPA C IWFIC  +L
Sbjct: 141 IEKGILELISQHGIRKLVMGAAADKRYSKNMMEIKSKKALSVCLQAPAFCQIWFICKEHL 200

Query: 202 IYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRV 261
           IYT+EG+LD  D E+   + QAS N E    N LRS S+ L  N   KLTNPVQDL  R 
Sbjct: 201 IYTKEGTLDEKDTELRPSTQQASPNPETVQSNHLRSHSINLGQNNHPKLTNPVQDLLRRA 260

Query: 262 RSMNFDRNVGNVMTS--QDSIGGLSSPASRSDAE----VSSDECTTGRSTSQGSLSSCSS 315
            S+ F R  G V TS   D +GG S+  SR DAE     SSDEC                
Sbjct: 261 HSVTFGRQGGKVSTSVTPDDVGGPSTSQSRPDAEGASSPSSDECDI-------------- 306

Query: 316 RGVIDVAMIPLIRTEGVSTLPPSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRRE 375
                                                 ++D LYDQL QA+AEA NSR+E
Sbjct: 307 --------------------------------------IEDPLYDQLEQALAEAVNSRQE 328

Query: 376 AFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEV 435
           AFEEA+RR KAE+ A+++IRRAKASE LYA+E+++R E EEALA  K EL++MK + DEV
Sbjct: 329 AFEEAVRRAKAERGAVDAIRRAKASEGLYADEMRQRNEIEEALAQEKEELQKMKNERDEV 388

Query: 436 MEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEA 495
           ME+L  ALDQK LL+SQIAE+DQ  KELEQKIISAVELLQNYKKE++ELQME D A+KEA
Sbjct: 389 MEKLCTALDQKKLLQSQIAEADQMVKELEQKIISAVELLQNYKKEREELQMELDNALKEA 448

Query: 496 EELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVA 555
           EELRKSR EA SSSHMPQFF +FS+SEIE AT NFD SLKIGEGGYGSIYKGLLRH QVA
Sbjct: 449 EELRKSRAEA-SSSHMPQFFFEFSYSEIEEATCNFDESLKIGEGGYGSIYKGLLRHTQVA 507

Query: 556 IKMLHPHSLQGPSEFQQEVGAY 577
           IK+LH HSLQGP+EFQQEV  Y
Sbjct: 508 IKVLHSHSLQGPAEFQQEVKFY 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064033|ref|XP_002301358.1| predicted protein [Populus trichocarpa] gi|222843084|gb|EEE80631.1| predicted protein [Populus trichocarpa]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 349/558 (62%), Positives = 403/558 (72%), Gaps = 52/558 (9%)

Query: 30  SRRGIVEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVM 89
           S R IVEEPVA VIEDKI+VAV K VKE K +LLWALQNSGGKRICIIHV  P+QMIP+M
Sbjct: 3   SGREIVEEPVARVIEDKIFVAVGKSVKECKLMLLWALQNSGGKRICIIHVLQPSQMIPLM 62

Query: 90  GTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILEL 149
           GTKF AS+L+E++V+AYRE+ERQ MH  LD  L ICR+MGVRAEKL  E ES EKGILEL
Sbjct: 63  GTKFRASALKEQEVRAYREVERQAMHKMLDEYLSICRKMGVRAEKLYVEMESIEKGILEL 122

Query: 150 ISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTREGSL 209
           ISH+GI+KLVMGAAADK + K MMD+KSKKAISV  QAPASCHIWFIC G+LI+TREG+L
Sbjct: 123 ISHHGIKKLVMGAAADKRHSKNMMDIKSKKAISVCLQAPASCHIWFICKGHLIHTREGAL 182

Query: 210 DGIDPEISSPSFQASHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFDRN 269
           DG   ++ S S Q S +TE    + +RSQS+ L  N  +KLTNP QDL  RVRSMN +  
Sbjct: 183 DGTGTDVGSSSQQTSPHTEAGQLSHMRSQSIALGQNHFVKLTNPAQDLVRRVRSMNVNGR 242

Query: 270 VGNVMTSQDSIGGLSSPASRSDAEVSSDECTTGRSTSQGSLSSCSSRGVIDVAMIPLIRT 329
            G + T     GG S+P+SRSDA+ SSDE   G                           
Sbjct: 243 GGRLSTPASPDGGPSTPSSRSDADGSSDEYDDG--------------------------- 275

Query: 330 EGVSTLPPSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKD 389
                                  S +D LYDQL +AM++AENSRREAFEEA+RR KAEK 
Sbjct: 276 -----------------------STEDPLYDQLEKAMSDAENSRREAFEEAVRRAKAEKY 312

Query: 390 AIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLL 449
           A E+ R+AKASE+LY EE KRRKE EE LA  K ELER+ ++ DEVMEEL+IA DQKSLL
Sbjct: 313 AFEATRKAKASENLYTEESKRRKEVEEELAKEKEELERINRECDEVMEELRIAEDQKSLL 372

Query: 450 ESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSS 509
           E QI ESDQ  KELEQKIISAV LLQNYKKEQDELQ ERD A+KE EELR+S+ EA S +
Sbjct: 373 EKQIKESDQMVKELEQKIISAVGLLQNYKKEQDELQKERDNALKEVEELRRSQTEA-SGT 431

Query: 510 HMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSE 569
           HM QFFS+FS SEIE AT +FDPSLKIGEGGYGSIYKG+LR  QVA+KMLH +SLQGP+E
Sbjct: 432 HMSQFFSEFSLSEIEEATQHFDPSLKIGEGGYGSIYKGVLRQTQVAVKMLHSNSLQGPAE 491

Query: 570 FQQEVGAYESFIFHFNLV 587
           FQQEV    S + H NL+
Sbjct: 492 FQQEVDVL-SKMRHPNLI 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87240964|gb|ABD32822.1| Protein kinase; U box [Medicago truncatula]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 333/597 (55%), Positives = 422/597 (70%), Gaps = 25/597 (4%)

Query: 1   MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKS 60
           MA+VSS+PA  Q   SV       + +   R  I EEP   V+++ I VAV+K VKESK 
Sbjct: 1   MAVVSSMPATIQRTGSV-------SSVRDVRGEIEEEPNQIVVDEVICVAVSKDVKESKL 53

Query: 61  VLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM 120
            L+WA+QNSGGK+ICI+ VH PA MIP+MG KFPASSL++++V+AYRE+ERQ++H  LD 
Sbjct: 54  NLIWAIQNSGGKKICILFVHVPATMIPLMGAKFPASSLKDQEVRAYREMERQNVHKTLDE 113

Query: 121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKA 180
            L IC++MGVRAEKL  E E+ EKGI+ELIS +GIRKL+MGAA+DK+Y ++MMDL+S+KA
Sbjct: 114 YLRICQRMGVRAEKLHIEMENIEKGIIELISQHGIRKLIMGAASDKNYSRRMMDLRSRKA 173

Query: 181 ISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSV 240
           I V +QAP+SCHI FIC G+LI+TR+ SLD  + E++SP  Q   N+    P+  RSQS+
Sbjct: 174 IYVCEQAPSSCHIQFICKGHLIHTRDRSLDERNVEVASPLLQQGPNSV--RPS--RSQSI 229

Query: 241 VLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIG--GLSSPASRSDAEVSSDE 298
            L  N      +  Q+LF RVRS N D    ++ T+   +   G S+P +R   EVSSDE
Sbjct: 230 TLGQNHRTNSISSSQELFRRVRSAN-DGMTASITTNSSPVDNEGFSTPRNRRGTEVSSDE 288

Query: 299 CTTGRSTSQGSLSSCSSRGVIDVAMIPLI---RTEGVSTLPPS----KEDLQS-SPPSVL 350
                 TS   LS+ S    ID  + P       E  S L  S     EDL+  SPPSVL
Sbjct: 289 SDRLSRTSPSGLSTFSD-STIDPTLTPYSVAESCENASDLTLSHLIKDEDLRHLSPPSVL 347

Query: 351 DGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKR 410
           DG V+D LYDQL QAM+EA N+ R A++E  RRGKAEKDAIE+IRRAKASESLY +EL  
Sbjct: 348 DGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKASESLYTDELNL 407

Query: 411 RKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISA 470
           RK  EE L   K ELE +  Q D+V EEL++A+D KS LESQ+A S+   +ELEQKIISA
Sbjct: 408 RKMAEEELRKEKEELESVTSQRDKVNEELRLAVDLKSSLESQLASSEVMIQELEQKIISA 467

Query: 471 VELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNF 530
           VELLQ+YK E+DELQ++RD A++EAE+LRK + E  SS+H+PQ FS+FSFSEIE AT NF
Sbjct: 468 VELLQSYKNERDELQIQRDNALREAEDLRKKQGEG-SSTHVPQLFSEFSFSEIEEATSNF 526

Query: 531 DPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           +PSLKIGEGGYG+IYKGLLRH +VAIK+LH +S+QGP EFQQEV    S + H NL+
Sbjct: 527 NPSLKIGEGGYGNIYKGLLRHTEVAIKILHANSMQGPLEFQQEVDVL-SKLRHPNLI 582

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507363|ref|XP_003623970.1| U-box domain-containing protein [Medicago truncatula] gi|355498985|gb|AES80188.1| U-box domain-containing protein [Medicago truncatula]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 333/597 (55%), Positives = 422/597 (70%), Gaps = 25/597 (4%)

Query: 1   MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKS 60
           MA+VSS+PA  Q   SV       + +   R  I EEP   V+++ I VAV+K VKESK 
Sbjct: 13  MAVVSSMPATIQRTGSV-------SSVRDVRGEIEEEPNQIVVDEVICVAVSKDVKESKL 65

Query: 61  VLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM 120
            L+WA+QNSGGK+ICI+ VH PA MIP+MG KFPASSL++++V+AYRE+ERQ++H  LD 
Sbjct: 66  NLIWAIQNSGGKKICILFVHVPATMIPLMGAKFPASSLKDQEVRAYREMERQNVHKTLDE 125

Query: 121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKA 180
            L IC++MGVRAEKL  E E+ EKGI+ELIS +GIRKL+MGAA+DK+Y ++MMDL+S+KA
Sbjct: 126 YLRICQRMGVRAEKLHIEMENIEKGIIELISQHGIRKLIMGAASDKNYSRRMMDLRSRKA 185

Query: 181 ISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSV 240
           I V +QAP+SCHI FIC G+LI+TR+ SLD  + E++SP  Q   N+    P+  RSQS+
Sbjct: 186 IYVCEQAPSSCHIQFICKGHLIHTRDRSLDERNVEVASPLLQQGPNSV--RPS--RSQSI 241

Query: 241 VLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIG--GLSSPASRSDAEVSSDE 298
            L  N      +  Q+LF RVRS N D    ++ T+   +   G S+P +R   EVSSDE
Sbjct: 242 TLGQNHRTNSISSSQELFRRVRSAN-DGMTASITTNSSPVDNEGFSTPRNRRGTEVSSDE 300

Query: 299 CTTGRSTSQGSLSSCSSRGVIDVAMIPLI---RTEGVSTLPPS----KEDLQS-SPPSVL 350
                 TS   LS+ S    ID  + P       E  S L  S     EDL+  SPPSVL
Sbjct: 301 SDRLSRTSPSGLSTFSD-STIDPTLTPYSVAESCENASDLTLSHLIKDEDLRHLSPPSVL 359

Query: 351 DGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKR 410
           DG V+D LYDQL QAM+EA N+ R A++E  RRGKAEKDAIE+IRRAKASESLY +EL  
Sbjct: 360 DGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKASESLYTDELNL 419

Query: 411 RKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISA 470
           RK  EE L   K ELE +  Q D+V EEL++A+D KS LESQ+A S+   +ELEQKIISA
Sbjct: 420 RKMAEEELRKEKEELESVTSQRDKVNEELRLAVDLKSSLESQLASSEVMIQELEQKIISA 479

Query: 471 VELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNF 530
           VELLQ+YK E+DELQ++RD A++EAE+LRK + E  SS+H+PQ FS+FSFSEIE AT NF
Sbjct: 480 VELLQSYKNERDELQIQRDNALREAEDLRKKQGEG-SSTHVPQLFSEFSFSEIEEATSNF 538

Query: 531 DPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           +PSLKIGEGGYG+IYKGLLRH +VAIK+LH +S+QGP EFQQEV    S + H NL+
Sbjct: 539 NPSLKIGEGGYGNIYKGLLRHTEVAIKILHANSMQGPLEFQQEVDVL-SKLRHPNLI 594

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568394|ref|XP_003552396.1| PREDICTED: U-box domain-containing protein 33-like [Glycine max]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 335/596 (56%), Positives = 419/596 (70%), Gaps = 24/596 (4%)

Query: 1   MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKS 60
           MA+VS +PA  Q + SVR        ++ +    +EEP  SV++  IYVAV K+VKES+ 
Sbjct: 1   MAVVSPMPATTQRMGSVR-------SLSDAGGKFLEEPNPSVVDQPIYVAVTKEVKESRL 53

Query: 61  VLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM 120
            L+WA+QNSGGKRICI++VH  A M+P++G KFPAS+L+EE+VQAY E ERQ MH  LD 
Sbjct: 54  NLIWAIQNSGGKRICILYVHVRATMVPLLGGKFPASALKEEQVQAYWEEERQGMHRILDD 113

Query: 121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKA 180
            L IC++MGVRAEKL  E +S EKGILELIS +GI+KLVMGAA+DK+Y ++MMDLKSKKA
Sbjct: 114 YLRICQRMGVRAEKLHIEMDSIEKGILELISQHGIQKLVMGAASDKYYNRRMMDLKSKKA 173

Query: 181 ISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSV 240
           ISV +QAPASCHI F+C G LI+TR+ S +  + +++SP  Q   N+       LRSQSV
Sbjct: 174 ISVCKQAPASCHIQFVCKGRLIHTRDRSSNEGNADVTSPLVQQVPNSV----RSLRSQSV 229

Query: 241 VLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMT--SQDSIGGLSSPASRSDAEVSSDE 298
            L  +R   LTNP  +LF RVRS N D +  + MT  S +   G S+P  R   EVSSDE
Sbjct: 230 TLGQDRRANLTNPALELFRRVRSAN-DGHGASFMTVSSPEDTEGFSTPHDRMGTEVSSDE 288

Query: 299 CTTGRSTSQGSLSSCSSRGVIDVAMIP-LIR--TEGVSTLPPSK---EDLQ-SSPPSVLD 351
                  S   LS+CS   V ++A  P LI   +E    L  S+   EDL  SSPPS LD
Sbjct: 289 SDRLSRMSPSGLSTCSDSAV-ELAFTPSLINESSENALELTLSRRIIEDLHYSSPPSTLD 347

Query: 352 GSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRR 411
           G +DD +Y+QL QA AEAEN+   A++E +RR KAEKDA E+IR+ KASESLY EEL  R
Sbjct: 348 GGMDDTIYEQLEQARAEAENATLNAYQETVRRRKAEKDAFEAIRKVKASESLYTEELNLR 407

Query: 412 KEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAV 471
           K  EE L   K ELE MK   D+V EEL +ALDQK  LESQIA S+   KELEQKI+SAV
Sbjct: 408 KMTEEKLRKEKEELESMKSLRDKVKEELCLALDQKESLESQIASSELMVKELEQKILSAV 467

Query: 472 ELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFD 531
           +LLQ+YK E+DELQM+RD A++EAEELRK + EA S +++PQ FS+FSFSEI+ AT NF+
Sbjct: 468 DLLQSYKNERDELQMQRDNALREAEELRKKQGEA-SGTNVPQLFSEFSFSEIKEATSNFN 526

Query: 532 PSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           PS KIGEGGYGSI+KG+LRH +VAIKML+  S+QGP EFQQEV    S + H NL+
Sbjct: 527 PSSKIGEGGYGSIFKGVLRHTEVAIKMLNSDSMQGPLEFQQEVDVL-SKLRHPNLI 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127680|ref|XP_002320134.1| predicted protein [Populus trichocarpa] gi|222860907|gb|EEE98449.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 326/569 (57%), Positives = 389/569 (68%), Gaps = 68/569 (11%)

Query: 29  SSRRGIVEEPVA---SVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQM 85
           +S R +VEE VA    VIE+KI+VAV K VKE KS+L WALQ SGGKRICIIHVH PAQM
Sbjct: 2   ASGREVVEETVARVIEVIEEKIFVAVGKSVKECKSMLFWALQKSGGKRICIIHVHQPAQM 61

Query: 86  IPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKG 145
           IP MGTKFPAS L+E++V+AY EIERQ+M   L   L +CR+MGVRAEKL  E ES EKG
Sbjct: 62  IPFMGTKFPASKLKEQEVRAYWEIERQEMLKMLGEYLFLCRKMGVRAEKLYVEMESIEKG 121

Query: 146 ILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNGNLIYTR 205
           ILELIS +GIRKLVMGAAADK Y K MMD+KSKKA+SV  QAPASCHIWFIC G+LI TR
Sbjct: 122 ILELISQHGIRKLVMGAAADKRYSKNMMDIKSKKAVSVCLQAPASCHIWFICKGHLIQTR 181

Query: 206 EGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMN 265
           +G+LDG D ++   S Q S NTE    N +RSQS++   +  +KLTNP QDLF ++  + 
Sbjct: 182 KGALDGTDTDVRPSSQQKSPNTEAGQSNIMRSQSILFGQHHHVKLTNPAQDLFRKMEGLQ 241

Query: 266 FDRNVGNVMTSQDSIGGLSSPASRSDAEVSSDECTTGRSTSQGSLSSCSSRGVIDVAMIP 325
             R  G + T                                         GV    +I 
Sbjct: 242 LHR--GQMQT-----------------------------------------GV----LIN 254

Query: 326 LIRTEGVSTLPPSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGK 385
           ++R +GV  LP     +Q S     DGS++D LYDQL QAMAEAENSR EA EEA+R  K
Sbjct: 255 MMRYQGV--LP----KIQFSHH---DGSIEDPLYDQLEQAMAEAENSRFEASEEAVRCAK 305

Query: 386 AEKDAIESIRRAKASESLYAEELKRR-------KEFEEALANGKLELERMKKQHDEVMEE 438
            E+D +E+IR+AKASESLY EE KRR        + +E L     ELE++ K+ DEVM E
Sbjct: 306 EERDVVEAIRKAKASESLYTEESKRRTVVEEELAKEKEELEKINKELEKINKEQDEVMGE 365

Query: 439 LQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEEL 498
           L IA D KSLLE QI ESD+  KELEQKIISAV LLQNYKKE+D L   RD A+KEAEEL
Sbjct: 366 LCIAQDHKSLLEKQIEESDEMVKELEQKIISAVGLLQNYKKERDHLHKGRDYALKEAEEL 425

Query: 499 RKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKM 558
           R+++ EA SS+HMP+FFSDFSFSEIE ATH+FDPS KIGEGGYG+IYKG+LR  QVA+KM
Sbjct: 426 RRNQTEA-SSTHMPRFFSDFSFSEIEEATHHFDPSRKIGEGGYGNIYKGVLRQTQVAVKM 484

Query: 559 LHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           L  +S+QGP+EFQQEV    S + H NL+
Sbjct: 485 LDSNSMQGPAEFQQEVNVL-SKMRHPNLI 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531997|ref|XP_003534561.1| PREDICTED: U-box domain-containing protein 33-like [Glycine max]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 333/596 (55%), Positives = 417/596 (69%), Gaps = 24/596 (4%)

Query: 1   MALVSSVPAIAQGVDSVRCPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESKS 60
           MA+VS VPA  Q + SVR        ++ +   I+EEP   V++  IYVAV K+VKESK 
Sbjct: 1   MAVVSPVPATTQRMGSVRL-------LSDAGGEILEEPNPRVVDQPIYVAVTKEVKESKL 53

Query: 61  VLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM 120
            L+WA+Q SGGKRICI++VH  A MIP++G KFPAS+L+EE+V+AY E ERQ MH  LD 
Sbjct: 54  NLIWAIQTSGGKRICILYVHVRATMIPLLGGKFPASTLKEEQVEAYWEEERQGMHGILDE 113

Query: 121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKA 180
            L IC++MGVRAEKL  E +S EKGILELIS +GIRKLVMGAA+DK+Y ++MMDLKSKKA
Sbjct: 114 YLCICQRMGVRAEKLHIEMDSIEKGILELISQHGIRKLVMGAASDKYYNRRMMDLKSKKA 173

Query: 181 ISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQSV 240
           +SV +QAPASCHI F+C G+LI+TR+ S D  + E++SP  Q   N+       LRS S+
Sbjct: 174 VSVCKQAPASCHIQFVCKGHLIHTRDRSSDEGNAEVASPLVQQVPNSLKS----LRSLSI 229

Query: 241 VLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVM--TSQDSIGGLSSPASRSDAEVSSDE 298
            L  +    +TNP  +LF RVRS N D +  + M  +S +   GLS+P  R   EVSSDE
Sbjct: 230 TLGQDCQANITNPALELFRRVRSAN-DGHGASFMAVSSPEDTEGLSTPRDRMGTEVSSDE 288

Query: 299 CTTGRSTSQGSLSSCSSRGVIDVAMIP-LIR--TEGVSTLPPSK---EDL-QSSPPSVLD 351
                  S   LS+CS   V ++A+ P LI   +E    L  S    EDL  SSPPS LD
Sbjct: 289 SDRLSRMSPSGLSTCSDSAV-ELALTPSLINESSENALELTLSHLIIEDLHHSSPPSTLD 347

Query: 352 GSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRR 411
           G +DD +YDQL QA AEAEN+   A++E +RR KAEKDA E+IR+ KASESLYAEEL +R
Sbjct: 348 GGMDDTIYDQLEQARAEAENATLNAYQETVRRMKAEKDAFEAIRKIKASESLYAEELNQR 407

Query: 412 KEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAV 471
           K  EE L   K ELE MK   D V EEL++ALDQK+ LESQIA ++   KELEQKI+SAV
Sbjct: 408 KMAEEKLRKEKEELENMKSLRDTVKEELRLALDQKASLESQIASTELMIKELEQKILSAV 467

Query: 472 ELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFD 531
            LLQ+YK E+DELQM+ D A++EAEELRK + EA S +H+PQ  S+FSFSEI+ AT NF+
Sbjct: 468 GLLQSYKNERDELQMQCDNALREAEELRKKQGEA-SGTHVPQLCSEFSFSEIKEATSNFN 526

Query: 532 PSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           PS KIGEGGYGSI+KG+L H +VAIKML+  S+QGP EFQQEV    S + H NL+
Sbjct: 527 PSSKIGEGGYGSIFKGVLHHTEVAIKMLNSDSMQGPLEFQQEVDVL-SKLRHPNLI 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522608|ref|XP_003529938.1| PREDICTED: U-box domain-containing protein 33-like [Glycine max]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 318/584 (54%), Positives = 399/584 (68%), Gaps = 30/584 (5%)

Query: 1   MALVSSVPAIAQGVDSVR-CPDIQMAGITSSRRGIVEEPVASVIEDKIYVAVAKQVKESK 59
           MA+VSS+PA    V+ V    DI + GI +SRR IV +P  S++ D IYVAV K VK SK
Sbjct: 1   MAMVSSMPATPPQVNPVNSLRDIGVPGIMTSRRKIVNKPSPSMVNDTIYVAVGKNVKSSK 60

Query: 60  SVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD 119
           S L+WA+QNSGG+RICI+HVH PA MIP+MG KFPAS+L EE+VQ Y E ER  M+  LD
Sbjct: 61  SNLIWAIQNSGGRRICILHVHVPAPMIPLMGAKFPASALREEEVQDYHETERLKMYKTLD 120

Query: 120 MCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKK 179
             L IC+ MGVRA KL  E +  EKGI+ELIS YGI+KLVMGAA+DK++ ++M   +SKK
Sbjct: 121 AYLSICQGMGVRAGKLQIEMDCIEKGIVELISQYGIQKLVMGAASDKYHSRRMTAPRSKK 180

Query: 180 AISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSFQASHNTENRHPNCLRSQS 239
           AI V +QAPASCHI FICNG LI+TR+ SLD  + E++ P  Q   N+E      LRSQS
Sbjct: 181 AIYVCEQAPASCHIQFICNGYLIHTRDCSLDIGNVEVAFPMAQQMANSEVGGSPKLRSQS 240

Query: 240 VVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGLSSPASRSDAEVSSDEC 299
           +V   N  +KLTNP Q+LF RVRS+N               G   S AS SD        
Sbjct: 241 IVQGQNHGIKLTNPAQELFRRVRSVN--------------DGHRRSLASVSDESYGQ--- 283

Query: 300 TTGRSTSQGSLSSCSSRGVIDVAMIPLIRTEG------VSTLPP---SKEDLQSSPPSVL 350
            +GRS S    S CS    ++  + P + ++G      ++   P   +K    S+ PS +
Sbjct: 284 -SGRSPS--VFSMCSHSISVEPGLTPNLISDGSENELDLTLNGPFLINKNLHHSASPSEM 340

Query: 351 DGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKR 410
           DG +DD LYDQL QAMAEA NS+R+A++E +RRG AEK+AI++IRRAK +E+LY EELK 
Sbjct: 341 DGGMDDALYDQLEQAMAEAVNSKRDAYQETVRRGNAEKNAIDAIRRAKTTENLYKEELKL 400

Query: 411 RKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISA 470
           RKE EEA+     +L  MK Q D+V EEL++AL Q S LE+QIA ++   KELEQKIISA
Sbjct: 401 RKEQEEAVEKANEKLNNMKSQTDKVNEELRLALFQNSSLENQIASTELMIKELEQKIISA 460

Query: 471 VELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNF 530
             LLQNYK E D+LQ++RD AV EAEE R+ + EASSS+H  Q FS+FSF EI+ AT NF
Sbjct: 461 ENLLQNYKDELDDLQIQRDIAVGEAEEFRRKQWEASSSAHKLQCFSEFSFQEIKEATSNF 520

Query: 531 DPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEV 574
           +PS KIGEGGYGSI+KG+LRH +VAIKML+  S QGP EFQQEV
Sbjct: 521 NPSQKIGEGGYGSIFKGILRHAEVAIKMLNRDSTQGPEEFQQEV 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
TAIR|locus:2050669	834	AT2G45910 [Arabidopsis thalian	0.406	0.287	0.573	1.5e-123
TAIR|locus:2101353	805	AT3G49060 [Arabidopsis thalian	0.375	0.275	0.375	3.3e-57
TAIR|locus:2098816	435	AT3G61390 [Arabidopsis thalian	0.292	0.397	0.456	9.9e-49
TAIR|locus:2198165	568	AT1G01660 [Arabidopsis thalian	0.296	0.308	0.355	4e-42
TAIR|locus:2082802	294	AT3G61410 "AT3G61410" [Arabido	0.299	0.602	0.457	4.9e-37
TAIR|locus:2050659	400	AT2G45920 [Arabidopsis thalian	0.192	0.285	0.426	7.4e-35
TAIR|locus:2198190	308	PUB54 "plant U-box 54" [Arabid	0.296	0.568	0.389	1.2e-20
TAIR|locus:2198180	365	AT1G01670 [Arabidopsis thalian	0.214	0.347	0.358	2.1e-18
TAIR|locus:2015656	758	AT1G16760 [Arabidopsis thalian	0.294	0.229	0.315	3.1e-17
TAIR|locus:2143094	701	AT5G12000 [Arabidopsis thalian	0.384	0.323	0.291	4.8e-17

TAIR|locus:2050669 AT2G45910 [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.5e-123, Sum P(2) = 1.5e-123
 Identities = 140/244 (57%), Positives = 187/244 (76%)

Query:   344 SSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESL 403
             SSP S  DG VDD+   ++ +A +EA +S++EAF E LRR KAEK+A+++IRRAK SES 
Sbjct:   298 SSPSSFPDG-VDDSFNVKIRKATSEAHSSKQEAFAETLRRQKAEKNALDAIRRAKQSESA 356

Query:   404 YAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKEL 463
             Y+EELKRRK+ E A+A  K     +K + + +MEELQ A+ QK++LESQIA+SD T ++L
Sbjct:   357 YSEELKRRKDTEIAVAKEKERFITIKNEQEVIMEELQSAMAQKAMLESQIAKSDGTMEKL 416

Query:   464 EQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEI 523
              QK+  AV+LLQ  + E++ELQ ERD+A++EAEELR S  E +S+  +PQ+F+DFSFSEI
Sbjct:   417 NQKLDIAVKLLQKLRDEREELQTERDRALREAEELR-SHAE-TSTLQLPQYFTDFSFSEI 474

Query:   524 EGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFH 583
             E AT++FD +LKIGEGGYGSIY GLLRH QVAIKML+P+S QGP E+QQEV    S + H
Sbjct:   475 EEATNHFDSTLKIGEGGYGSIYVGLLRHTQVAIKMLNPNSSQGPVEYQQEVDVL-SKMRH 533

Query:   584 FNLV 587
              N++
Sbjct:   534 PNII 537

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2101353 AT3G49060 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 84/224 (37%), Positives = 136/224 (60%)

Query:   364 QAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKL 423
             +AM +   S R  + EA ++ + +    E++ +AKA E L  +E  +RK  EE L   KL
Sbjct:   295 KAMHDIGQSDRTVYGEAGKKWEEDASTTEALCKAKALEGLCIKESSQRKRLEELLEKEKL 354

Query:   424 ELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDE 483
             E++ + +Q++  M+ELQ+   +   LESQ+ +     KE  +K  +A+ELL+++++++DE
Sbjct:   355 EVKMVIEQNNGFMKELQMVQGRNLKLESQMRKLQDLEKEHGEKFDTAMELLKSFRQKRDE 414

Query:   484 LQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGS 543
             ++++ + AVKE   LR+  K  +  S   +   D+SF EI  AT+ FDPS K+GEG YGS
Sbjct:   415 IRIDHENAVKEVNALRRLVKGETGESSGSEML-DYSFMEINEATNEFDPSWKLGEGKYGS 473

Query:   544 IYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
             +YKG L+H+QVA+KML  +      EF++ V    S + H NLV
Sbjct:   474 VYKGNLQHLQVAVKMLPSYGSLNHFEFERRVEIL-SRVRHPNLV 516

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2098816 AT3G61390 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 9.9e-49, Sum P(2) = 9.9e-49
 Identities = 85/186 (45%), Positives = 113/186 (60%)

Query:    22 IQMAGITSSRRGI-VEEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVH 80
             ++M G   S  GI + E +    ++KIYVAV ++  ESKS L+WA+QNSGGK  CI+HVH
Sbjct:    11 VKMVGSLRSH-GIDIPESMEINKKEKIYVAVTEKDLESKSSLVWAIQNSGGKEFCIVHVH 69

Query:    81 TPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESE 140
              P   IP  G  F      E+K++ YR+ E+   H + +  L ICRQM V AE +  E++
Sbjct:    70 QP---IP--GEMF-----HEQKLRLYRK-EKDKAHKNSEKYLQICRQMQVTAEIIYIETD 118

Query:   141 STEKGILELISHYGIRKLVMGAAAXXXXXXXXXXXXXXXAISVRQQAPASCHIWFICNGN 200
             S EKGIL+LIS  G+ KLVMGAAA               AI + ++APA+C IWF CNG 
Sbjct:   119 SVEKGILQLISQRGVTKLVMGAAADRHYSMRMRDLKSKKAIYIHREAPATCLIWFTCNGY 178

Query:   201 LIYTRE 206
             LI +RE
Sbjct:   179 LICSRE 184

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2198165 AT1G01660 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
 Identities = 69/194 (35%), Positives = 101/194 (52%)

Query:    45 DKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQ 104
             D ++VAV   V+ES+S LLWAL+N G K++CI+HV+ P    P       A  LEE +  
Sbjct:    10 DVVHVAVKSDVRESRSTLLWALRNLGAKKVCILHVYQPKTASPA------ARKLEELEAI 63

Query:   105 AYREIERQDMHNHLDMCLLICRQMGVRAEKLDT---ESESTEKGILELISHYGIRKLVMG 161
              Y     + +H++ D C    +Q GV  + +     E    ++GILELI    I+KLVMG
Sbjct:    64 MY-----ETLHDYFDFC----QQEGVNEDDIYISCIEMNDVKQGILELIHESKIKKLVMG 114

Query:   162 AAAXXXXXXXXXXXXXXXAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPSF 221
             AA+               A  V Q AP+SC + F+C+G+LIYT+E +L+    E  S + 
Sbjct:   115 AASDHHYSEKMFDLKSRKAKYVYQHAPSSCEVMFMCDGHLIYTKEANLEDCMGETESEAG 174

Query:   222 QASHNT-ENRHPNC 234
             Q+      +  P C
Sbjct:   175 QSKPKLYSSASPKC 188

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2082802 AT3G61410 "AT3G61410" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 81/177 (45%), Positives = 113/177 (63%)

Query:    36 EEPVASVIEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPA 95
             E+  A V++++IYVA+ +++  +KS L W L N  G +ICI+ VH P QMIPV+GTKF A
Sbjct:     3 EKEEAGVMDERIYVALGREIANNKSNLAWVLDNCQGNKICIVLVHRPPQMIPVLGTKFDA 62

Query:    96 SSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGI 155
             ++++EE V+AYRE ++      LD  L IC + GV+AEKL  E  S EKGI+++IS   +
Sbjct:    63 ATVDEELVRAYREKQKAKTDKILDEYLRICLRKGVQAEKLCVEMNSIEKGIVQMISENKV 122

Query:   156 RKLVMGAAAXXXXXXXXXXXXXXXAISVRQQAPASCHIWFICNGNLIYTREGSLDGI 212
             RK +MGAA+               AI V QQA A+CHI F C G LI+TRE  +D +
Sbjct:   123 RKFIMGAASDKHFSTKMEDLRSKKAIFVCQQASATCHIRFTCKGYLIHTREARMDEV 179

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2050659 AT2G45920 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
 Identities = 49/115 (42%), Positives = 65/115 (56%)

Query:   106 YREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAAX 165
             YR+ E++     LD  L  CRQM V AE +  + ES EKGI++LIS   ++KLVMGAA+ 
Sbjct:    52 YRK-EKEKTQKILDKYLQKCRQMQVCAEMIHIKMESVEKGIIQLISERNVKKLVMGAASD 110

Query:   166 XXXXXXXXXXXXXXAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSPS 220
                           AI +RQ+APA+C IWF C G L+Y RE  +     E +S S
Sbjct:   111 TRYSMRMADLLSTKAIYIRQEAPATCCIWFTCKGYLVYKRESIMGNTSLEYASTS 165

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2198190 PUB54 "plant U-box 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 72/185 (38%), Positives = 91/185 (49%)

Query:    43 IEDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEK 102
             +ED IYVAV + V+ESK  LLWAL+N   K+I ++HVH P  +         +S LE+ +
Sbjct:     1 MEDAIYVAVNQDVRESKKTLLWALKNLQVKKIFLLHVHLPFSLTT------SSSRLEQSE 54

Query:   103 VQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTE---KGILELISHYGIRKLV 159
             + A ++ E     N L     IC   GV  + +DT   S     +GI+ELI    I  LV
Sbjct:    55 IDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLV 114

Query:   160 MGAAAXXXXXXXXXXXXXXXAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEISSP 219
             MGAAA               A  V Q AP SC IWFIC G LI  RE S    +P  S  
Sbjct:   115 MGAAADPHYSRGMSITSRK-AEYVSQHAPHSCKIWFICKGKLIKQRERSFYLGNPSDSFS 173

Query:   220 SFQAS 224
              F  S
Sbjct:   174 EFSTS 178

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2198180 AT1G01670 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 47/131 (35%), Positives = 66/131 (50%)

Query:    94 PASS-LEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTE---SESTEKGILEL 149
             P+SS LE+ ++ A +E+E+   ++ L     IC   GV  + +D     + S  + I+EL
Sbjct:     3 PSSSGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVEL 62

Query:   150 ISHYGIRKLVMGAAAXXXXXXXXXXXXXXXAISVRQQAPASCHIWFICNGNLIYTREGSL 209
             I    I+KL+MGA A               A  V Q AP  C+IW +CNGNLI TREG  
Sbjct:    63 IYQNNIKKLIMGATADSHYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRF 122

Query:   210 DGIDPEISSPS 220
             +      SS S
Sbjct:   123 EHAGSAYSSSS 133

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2015656 AT1G16760 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
 Identities = 58/184 (31%), Positives = 94/184 (51%)

Query:   413 EFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVE 472
             + E  +   +LEL++    +     E   A ++ + L+    E ++  +EL+    +A+ 
Sbjct:   324 DVEAQMKRLRLELKQTMDMYSSACREALTARNEATELQKLRTEEERRLEELKMTEETAMS 383

Query:   473 LLQNYK-KEQDELQM-ERDKAVKEAEELR------KSRKEASS-SSHMPQFFSDFSFSEI 523
             +++N + K +  L+  E    + E E  R      K  KE+ S S H    +  +S  EI
Sbjct:   384 IVENERAKAKTALEAAEAANRLAEVEAKRRVHAEMKVLKESDSFSRHSIVRYRKYSVQEI 443

Query:   524 EGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFH 583
             E  T NF  S K+GEGGYG +++G L H  VA+K+L P + QG S+F +EV    S I H
Sbjct:   444 EEGTANFAESRKVGEGGYGPVFRGHLDHTSVAVKVLRPDAAQGRSQFHKEVEVL-SCIRH 502

Query:   584 FNLV 587
              N+V
Sbjct:   503 PNMV 506

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2143094 AT5G12000 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 70/240 (29%), Positives = 119/240 (49%)

Query:   353 SVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRK 412
             S  D   D  +  M  + +   E F+     G +++ A +S R  +A       ELK+  
Sbjct:   247 SFSDESSDVGSMMMMGSIDLSAENFDMVGGSGSSDESASQSTRDIEAEMKRLKIELKQTM 306

Query:   413 EFEEALANGKLELERMKKQHDE-VMEELQIALDQKSLLESQIAESDQTAKELEQ-KIISA 470
             +   +     L  ++   + ++  MEE +   + ++  E+ +A +     E+E+ K  +A
Sbjct:   307 DMYSSACKEALNAKKKANELNQWKMEEARRFEEARNAEEAALAVA-----EMEKAKCRAA 361

Query:   471 VELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQF---FSDFSFSEIEGAT 527
             +E  +  ++   EL+ +R K   E +  R+S+++  + S + Q    +  +S  EIE AT
Sbjct:   362 LEAAEKAQR-MAELEGQRRKQA-EMKARRESQEKDRALSALVQNDVRYRKYSIDEIEVAT 419

Query:   528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
               F  + KIGEGGYG +Y G L H  VAIK+L P + QG  +FQQEV    S I H ++V
Sbjct:   420 ERFANNRKIGEGGYGPVYHGTLDHTPVAIKVLRPDAAQGKKQFQQEVEVLSS-IRHPHMV 478

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026876001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (849 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	591
cd01989	146	cd01989, STK_N, The N-terminal domain of Eukaryoti	5e-46
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
cd00293	130	cd00293, USP_Like, Usp: Universal stress protein f	6e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-04
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
COG1842	225	COG1842, PspA, Phage shock protein A (IM30), suppr	0.002
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.002
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
pfam04012	220	pfam04012, PspA_IM30, PspA/IM30 family	0.003
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
pfam13949	292	pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bi	0.004
PRK14139	185	PRK14139, PRK14139, heat shock protein GrpE; Provi	0.004
COG4487	438	COG4487, COG4487, Uncharacterized protein conserve	0.004

>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases

 Score =  158 bits (402), Expect = 5e-46
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 12/156 (7%)

Query: 46  KIYVAVAKQVKESKSVLLWALQN--SGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKV 103
            + VAV K  K+SK+ L WAL N  + G+ I ++HVH P   IP    K        E  
Sbjct: 1   SVAVAVDK-DKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKL-------EVA 52

Query: 104 QAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAA 163
            AY++ E ++    L      C + GV+ E +  E +   K I+E ++ +GI KLVMGA+
Sbjct: 53  SAYKQEEDKEAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGAS 112

Query: 164 ADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNG 199
           +D H+  K    KS  A SV ++AP  C ++ +  G
Sbjct: 113 SDNHFSMK--FKKSDVASSVLKEAPDFCTVYVVSKG 146

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.1 bits (133), Expect = 9e-08
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIES--------IRRAKASESLYAEELK-- 409
            +L + + E E    E  ++    G+ E+  ++         I   + S +    EL+  
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 410 --RRKEFEEALANGKLE-------LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTA 460
             R  + E  +     E       +E  +K+ D++ EE     ++   L +++ E D+  
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380

Query: 461 KELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
            E   ++    E L+  K+E +EL+ E D+  +E + L +   + 
Sbjct: 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
            +L +A  E E       EE     +A ++ +  +    A      EELKR  E  E   
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE-- 411

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
                LER+ ++ +++ EEL+    +   L++++ E ++  +ELE+++    + L+  ++
Sbjct: 412 ----RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 480 EQDELQMERDKAVKEAEELRK 500
           E  ELQ E  +  KE   L  
Sbjct: 468 ELAELQEELQRLEKELSSLEA 488

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 14/164 (8%)

Query: 356 DNLYDQLAQAMAEAE--NSRREAFEEALRRGKAEKD-----------AIESIRRAKAS-E 401
           + L  +LA    E E   SR E  EE L   + E +            +ES+  A A  +
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 402 SLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAK 461
               E  ++R+  +E L   + ELE  +++ D +  EL+    ++  LE +I E ++  +
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 462 ELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
           ELE+K+    E L+  +KE +EL+ E ++   E EEL    KE 
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 5/148 (3%)

Query: 363 AQAMAEAENSRREAFEEALRRGKAEKDAIE-SIRRAK----ASESLYAEELKRRKEFEEA 417
            +          E  EE  +  + E + +E  +  A+    A E       +RR+  E+ 
Sbjct: 770 LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829

Query: 418 LANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNY 477
           +   + E+E ++++ DE+ EEL+    +   L+ ++ E +   +ELE ++    E  +  
Sbjct: 830 IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889

Query: 478 KKEQDELQMERDKAVKEAEELRKSRKEA 505
           ++E  EL+ E  +  +E E+LR+  +E 
Sbjct: 890 EEELRELESELAELKEEIEKLRERLEEL 917

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 33/148 (22%), Positives = 68/148 (45%)

Query: 358 LYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEA 417
           L ++L     E  +      E   +  + E+   E  R   A E    +   R +E EE 
Sbjct: 686 LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745

Query: 418 LANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNY 477
           L   + ELE ++++ +E+ EEL+   +  + L+ +I E ++  + L++++    E L+  
Sbjct: 746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEA 805

Query: 478 KKEQDELQMERDKAVKEAEELRKSRKEA 505
           ++  D L+ E +   +  E L +  +E 
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEEL 833

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
           ++L + + E E       E   +  K E + +E  R+A   E    EE     E E  L 
Sbjct: 754 EELQERLEELEEELESLEEALAKL-KEEIEELEEKRQALQEELEELEEELE--EAERRLD 810

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
             + ELE ++++ + + +E++   ++   LE ++ E ++  +ELE+++    E L+  + 
Sbjct: 811 ALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA 870

Query: 480 EQDEL-------QMERDKAVKEAEELRKSRKEASS 507
           E++EL       + E+++  +E  EL     E   
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKE 905

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 339 KEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAK 398
           +E+L+S   ++     +    ++  QA+ E      E  EEA RR  A +  +ES+ + +
Sbjct: 764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823

Query: 399 ASESLYAEELK-RRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESD 457
                  EEL+   +E EE L   + ELE ++K+ +E+ EEL+    +K  LE ++    
Sbjct: 824 ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL---- 879

Query: 458 QTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKE 504
              KELE++     E L+  + E  EL+ E +K  +  EEL    + 
Sbjct: 880 ---KELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 371 NSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELK-RRKEFEEALANGKLELERMK 429
               E  EE L R + E + ++     +A + +  EELK   +E  E L   + EL  +K
Sbjct: 238 RKELEELEEELSRLEEELEELQE-ELEEAEKEI--EELKSELEELREELEELQEELLELK 294

Query: 430 KQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERD 489
           ++ +E+  E+ +  ++   LE+++ E ++  +EL++KI +  E L+  +   +EL+    
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 490 ---KAVKEAEELRKSRKEA 505
              +A +E EE   +  E 
Sbjct: 355 ELEEAKEELEEKLSALLEE 373

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 4/142 (2%)

Query: 363 AQAMAEAENSRRE--AFEEAL--RRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEAL 418
            Q     E+      A EE L   +   E    +     +       E L   +E +E L
Sbjct: 192 GQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL 251

Query: 419 ANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYK 478
              K  L  ++    E ++  +  L +   L  ++ E  +  +ELE++I    E L+  +
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311

Query: 479 KEQDELQMERDKAVKEAEELRK 500
              +EL+   +K     E L K
Sbjct: 312 ALLEELEELLEKLKSLEERLEK 333

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEF-EEALA 419
           +L +   E      +  E+     K+ K+ + S+           EEL+R+ E  +  LA
Sbjct: 668 ELKELEEELAELEAQ-LEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
             + ELE+++ + +E+ EEL+   ++   L+ ++        ELE+++ S  E L   K+
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLE-------ELEEELESLEEALAKLKE 779

Query: 480 EQDELQMERDKAVKEAEELRKSRKEA 505
           E +EL+ +R    +E EEL +  +EA
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEA 805

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 361 QLAQAMAEAEN--SRREAFEEALRRGKAEKDAIESIRRAKASE-----SLYAEELKRRKE 413
           +LA+  AE +   +  E  E  +   +  +D +         E     +   E  K   E
Sbjct: 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382

Query: 414 FEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKI---ISA 470
             + L + + +LE++K++ +E+  EL    ++   L  ++A+ +     +E KI      
Sbjct: 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442

Query: 471 VELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
            E     + ++ E ++E+  A     E      + 
Sbjct: 443 KEDKA-LEIKKQEWKLEQLAADLSKYEQELYDLKE 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 25/173 (14%)

Query: 361 QLAQAMAEAENSRR------EAFEEALRRGKAEKDAIESIRR--AKASESLYAEELK--- 409
           +L +   E            E  EEA +  +  K  +E +R    +  E L   + +   
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299

Query: 410 ----------RRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQT 459
                     R +E E  L   +  LE +K++ + + EEL+        LE  +AE ++ 
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Query: 460 AKELEQK----IISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSS 508
            +ELE+K    +    EL +  ++E  EL+ E  +   E EEL++  +     
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 5e-05
 Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 363  AQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGK 422
            A+   +AE   ++A  EAL++   E    E +++ +A E   AEELK+ +E  +  A   
Sbjct: 1677 AEEAKKAEEDEKKA-AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE-- 1733

Query: 423  LELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQD 482
             E ++  ++  +  EE +   ++K  +     E ++ A+E+ ++  + +E  +   +E +
Sbjct: 1734 -EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE--EELDEEDE 1790

Query: 483  ELQMERDKAVKE 494
            + +ME DK +K+
Sbjct: 1791 KRRMEVDKKIKD 1802

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 7/157 (4%)

Query: 356 DNLYDQLAQAMAEAEN-SRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKR---- 410
             L   LA+  AE E    R A           +      R  +A E L   E +     
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 411 --RKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKII 468
              ++ +E L   +  L+ ++ +   + EE     ++   LE +IA +++  ++LE++I 
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 469 SAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
              E +++   E +EL+   ++   E E L   R   
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASL 885

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 7/136 (5%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
            L +  AE      EA     R    E+    + RR +  E    E  +  +     +  
Sbjct: 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863

Query: 421 GKLELERMKKQHDEVMEE-------LQIALDQKSLLESQIAESDQTAKELEQKIISAVEL 473
            +  +E ++ + + ++ E       L +   +   L  ++ E +    EL +++    E 
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

Query: 474 LQNYKKEQDELQMERD 489
           L   +   + L++  D
Sbjct: 924 LAQLELRLEGLEVRID 939

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 46  KIYVAVAKQVKESKSVLLWALQN--SGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKV 103
           +I VAV    +ES+  L WA +     G  + ++HV  P                     
Sbjct: 1   RILVAVDGS-EESERALRWAARLARRLGAELVLLHVVDPPPSSAA--------------- 44

Query: 104 QAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGA 162
               E+  ++    L+       + GV+ E          + ILE     G   +VMG+
Sbjct: 45  -ELAELLEEEARALLEALREALAEAGVKVE-TVVLEGDPAEAILEAAEELGADLIVMGS 101

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 19/155 (12%)

Query: 373 RREAFEEALRRGKAEKDAI----ESIRRAKAS--------ESLYAEELKRRKEFEEALAN 420
           R +   +AL++ KAE +A+    E++              ES   E  +R K  EE L+ 
Sbjct: 25  RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA 84

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE 480
            K E E           E+QIA ++ + LE ++AE  +  ++LE++I    E L+  +K 
Sbjct: 85  VKDERELRALNI-----EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139

Query: 481 QDELQMERDKAVKEAEELRK--SRKEASSSSHMPQ 513
             E +   ++ V E  E  +  S K       +  
Sbjct: 140 LAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174

Length = 239

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           +L + + E E       E         ++  E +   K       EEL+ R+   E    
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLE---- 347

Query: 421 GKLELERMKKQHDEVMEELQIALD-QKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
              ELE++  + +E  EEL+  L      LE       +   ELE ++      L+  K+
Sbjct: 348 ---ELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 480 EQDELQMERDKAVKEAEELRKSRKEASSS 508
           E + L+   ++  +  E+L++  KE  + 
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAE 433

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 36/151 (23%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRR----AKASESLYAEELKRRK 412
            L ++LA+  A+ E    E  +      ++ +D +E +RR     +        EL   +
Sbjct: 671 ELEEELAELEAQLE-KLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729

Query: 413 EFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVE 472
           E  E L +   ELE   ++ +E +EELQ  L++   LE ++   ++   +L+++I    E
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEE---LEEELESLEEALAKLKEEIEELEE 786

Query: 473 LLQNYKKEQDELQMERDKAVKEAEELRKSRK 503
             Q  ++E +EL+ E ++A +  + L +  +
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELE 817

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEE 416
           +L  +  +   E         EE   + +  ++    I   +         L+  +E  E
Sbjct: 263 SLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLE 322

Query: 417 ALANGKLELERMKKQHDEVMEELQIALDQK----SLLESQIAESDQTAKELEQKIISAVE 472
            L + +  LE+++++ +++  EL+   ++K     LLE ++ E ++  +ELE+++  A+E
Sbjct: 323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALE 382

Query: 473 LLQNYKKEQDEL---QMERDKAVKEA-EELRKSRKE 504
            L+  ++   EL     E   A++E  EEL +  KE
Sbjct: 383 RLKQLEEAIQELKEELAELSAALEEIQEELEELEKE 418

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 368 EAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRR-KEFEEA------LAN 420
           E    +    E+ L   + E   +         ES+  EEL+ R KE E        L +
Sbjct: 552 EELKKKLAELEKKLDELEEELAELLKELEELGFESV--EELEERLKELEPFYNEYLELKD 609

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE 480
            + ELER +K+  ++ EEL  A ++ +  E ++ E  +  +ELE+K   + E  +  ++E
Sbjct: 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY--SEEEYEELREE 667

Query: 481 QDELQMERDKAVKEAEELRKSRKEASSS 508
             EL  E      E EEL K R+E   +
Sbjct: 668 YLELSRELAGLRAELEELEKRREEIKKT 695

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 13/151 (8%)

Query: 368 EAENSRREAFEEALRRGKAEKDAI---ESIRRAKASESLYAEELKRRKEF---EEALANG 421
           + E   RE   E L +  AE +        + +   E L       R+E    E  LA  
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395

Query: 422 KLELERMKKQHDEV-------MEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELL 474
           + ELE +K++ + +        E L+   ++   LE+++ E     +EL +++    E L
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 475 QNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
           +  +    EL+ E  +  +E + L K     
Sbjct: 456 EELRDRLKELERELAELQEELQRLEKELSSL 486

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 373 RREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQH 432
           R E   E L   + E    E       +E          +E EE L   +LE+  ++++ 
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAEL---------QELEEKLEELRLEVSELEEEI 283

Query: 433 DEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAV 492
           +E+ +EL    ++ S LE Q     +    LE+++      L+  + + DEL  E  +  
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343

Query: 493 KEAEELRKSRKEAS 506
           ++ EEL++  +   
Sbjct: 344 EKLEELKEELESLE 357

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 360  DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKAS----ESLYAEELKRRKEFE 415
            D+L + + E E    E  EE       +++  + ++  +      E    E      E +
Sbjct: 845  DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904

Query: 416  EALANGKLELERMKKQHDEVMEELQIALDQKS--LLESQIAESDQTAKELEQKI------ 467
            E +   +  LE ++ + + +  EL    ++      ++   E ++  + LE++I      
Sbjct: 905  EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPV 964

Query: 468  -ISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKE 504
             + A+E  +  ++  +EL+ +R+   +  E+L +  +E
Sbjct: 965  NLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 360 DQLAQAMAE-----AENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEF 414
           ++L +   E     AE    EA  E L     E +  +          L  +      E 
Sbjct: 344 EKLEELKEELESLEAELEELEAELEELESRLEELEE-QLETLRSKVAQLELQIASLNNEI 402

Query: 415 EEALANGKLELERMKKQHDEVMEELQIALD--QKSLLESQIAESDQTAKELEQKIISAVE 472
           E   A  +  LE  +++  + +EEL   L+  +   L++++ E ++  +EL++++    E
Sbjct: 403 ERLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461

Query: 473 LLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
            L+  ++E +E +   D A +E  +L+ +R ++
Sbjct: 462 ALEELREELEEAEQALDAAERELAQLQ-ARLDS 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 29/158 (18%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 356 DNLYDQLAQAMAEAENSRREAFEEALRRG--KAEKDAIESIRRAKASESLYAEELKRRKE 413
           D +  +L +   E    + +  E  L     K+ +  IE + + + +  L  EE +   +
Sbjct: 79  DEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQ 138

Query: 414 FEEALANGKLELERMKKQHDEVMEELQIALDQKSLLES---QIAESDQTAKELEQKIISA 470
             + L     + ++  ++++++ E      + K        +I E    A+E  +++I  
Sbjct: 139 KIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKL 198

Query: 471 VELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSS 508
            E     +KE DEL  E  +  K+ +EL +  +   + 
Sbjct: 199 FEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNE 236

Length = 294

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 356 DNLYDQLAQAMAEAENS------RREAFEEALRRGKAE----KDAIESIRRAKASESLYA 405
           +N  D+L+Q +++A           E  E+   + K      ++ + S+ +   +     
Sbjct: 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL 760

Query: 406 EEL-KRRKEFEEALANGKLEL---ERMKKQH--DEVMEELQIALDQKSLLESQIAESDQT 459
           +EL  R +E EE L   +  L   E         E+  EL    ++ S +E+++ E +Q 
Sbjct: 761 KELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820

Query: 460 AKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
              L  +     + +Q  ++++ +L+ E+ K++++  E    +KE 
Sbjct: 821 LNRLTLEKEYLEKEIQELQEQRIDLK-EQIKSIEKEIENLNGKKEE 865

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 356 DNLYDQLAQAMAEAENSRRE------AFEEALRRGKAEKDAIESIRRAKASESLYAEEL- 408
            +L D L +   + E   R+               +  +  +E +           EEL 
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757

Query: 409 KRRKEFEEAL-------ANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAE------ 455
           +R +E EE L       A  K E+E ++++   + EEL+   ++    E ++        
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817

Query: 456 --------SDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASS 507
                    +Q  +ELE++I    E L   ++E +EL+ E ++  +E EEL   ++E   
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877

Query: 508 S 508
            
Sbjct: 878 E 878

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 31/149 (20%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           +++      E    E  E   R  + ++         +  E+L  E  +   E EEA   
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362

Query: 421 GKLELERMKKQHDEVMEELQIALD----QKSLLESQIAESDQTAKELEQKIISAVELLQN 476
            + +L  + ++ +E+ E L+  L     + + + +++ E  +  + LE+++    E L++
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLED 422

Query: 477 YKKEQDELQMERDKAVKEAEELRKSRKEA 505
            K+E  EL+ E ++   E EEL +  +E 
Sbjct: 423 LKEELKELEAELEELQTELEELNEELEEL 451

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 340 EDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESI----- 394
           ED       +L+         +  + + E     ++  +E   R    ++ ++S+     
Sbjct: 565 EDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA 624

Query: 395 -RRAKASESLYAEELKRRKE---FEEALANGKLELERMKKQ-HDEVMEELQIALDQKSLL 449
               + +E     EL++       EE L     ELE   ++   E+  ELQ   +++ L 
Sbjct: 625 ENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLE 684

Query: 450 ESQIAESDQTAKELEQ-------------KIISAVELLQNYKKEQDELQMERD---KAVK 493
           E ++ E +Q  +ELEQ             +I   +E L++ K E +EL+ E +   KA++
Sbjct: 685 E-KLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALE 743

Query: 494 EAEELRKSRKEASSSSHMPQFFSDF 518
             EELR+   +A   + + +     
Sbjct: 744 LLEELREKLGKAGLRADILRNLLAQ 768

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
           + L + +AE E  +    E   R  + E   +E+++  +         L+  +E      
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEE------ 288

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
               ++ER+++   E+ E  +     ++LLE      ++  K LE+++    E L+  + 
Sbjct: 289 ----KIERLEELEREIEELEEELEGLRALLEELEELLEKL-KSLEERLEKLEEKLEKLES 343

Query: 480 EQDELQMERDKAVKEAEELRKSRKE 504
           E +EL  E+++  K  EE  K  +E
Sbjct: 344 ELEELAEEKNELAKLLEERLKELEE 368

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 364  QAMAEAENSRR-EAFEEALRRGKAEK-DAIESIRRA-----KASESLYAEELKRRKEFEE 416
            QA  +AE +R+ +  ++A  + KA++    E  ++A     KA E+  A+E K++ E  +
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328

Query: 417  ALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQN 476
              A+   +     K+  E  +    A   ++    + AE+ +  KE  +K   A +    
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388

Query: 477  YKKEQDELQMERDKAVKEAEELRKSRKE 504
             KK+ DE + + ++  K+A+EL+K+   
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAA 1416

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 350  LDGSVDDNLYDQLAQAMA-EAENSRREAFEEALR----RGKAEKDAIESIRRA----KAS 400
            L  S  D  +D      A EA        EEA +    + +  + A E+ ++A    KA 
Sbjct: 1072 LKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE 1131

Query: 401  ESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTA 460
            E+  AE+ ++ +E  +A    ++E+ R K +     EE + A D K    ++ AE  + A
Sbjct: 1132 EARKAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKAEDAKKAEAARKAEEVRKA 1190

Query: 461  KEL----EQKIISAVELLQNYKKEQDELQMERDK---AVKEAEELRKSRKEA 505
            +EL    + +   A    +  +K ++  + E  K   AVK+AEE +K  +EA
Sbjct: 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA 1242

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 355  DDNLYDQLAQAMAEAENSRRE---AFEEALRRGKAEKDAIESIRRAKASESLYAEELKRR 411
            D N+  + A+   +AE +R E      E  ++ KAE+       + KA E   AEE K++
Sbjct: 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634

Query: 412  KE-FEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISA 470
             E  ++  A  K + E +KK  +E   +      +K+  + + AE  + A+E E+K   A
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAA-EEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

Query: 471  VELLQNYKKEQDELQMERDKAVKEAEELRKSRKE 504
            ++      K+ +EL+ +  +  K+AEEL+K+ +E
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%)

Query: 368 EAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELER 427
           E      E  +E L+  + E + +      +  E    E      E EE +   + EL  
Sbjct: 235 EELREELEELQEELKEAEEELEELT--AELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 428 MKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQME 487
           +  +   + ++ QI  ++ + LE Q+ E +   +ELE K+    E L   +++ +EL+ E
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 488 RDKAVKEAEELRKSRKEASSSSH 510
            +    E EEL    +E  S   
Sbjct: 353 LESLEAELEELEAELEELESRLE 375

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 535 KIGEGGYGSIYKGLLR------HMQVAIKML-HPHSLQGPSEFQQE 573
           K+GEG +G +YKG L+       ++VA+K L    S Q   EF +E
Sbjct: 6   KLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLRE 51

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 3e-04
 Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 385 KAEKDAIESIRRAKASESLYAEELKRRKEFE--EALANGKLELERMKKQHDEVMEELQIA 442
           +AE++A   +  AK      AE +K+    E  E +   + E E+  ++    +++L+  
Sbjct: 35  EAEEEAKRILEEAKKE----AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR 90

Query: 443 LDQK-SLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEEL 498
           L QK   L+ ++   ++  +ELE+K     +  Q  +K+++EL+   ++ ++E E +
Sbjct: 91  LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147

Length = 520

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 535 KIGEGGYGSIYKGLLR------HMQVAIKML-HPHSLQGPSEFQQE 573
           K+GEG +G +YKG L+       ++VA+K L    S Q   EF +E
Sbjct: 6   KLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLRE 51

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 363  AQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGK 422
            A+ + +AE  +++  E+  ++   EK   E +++A+    + A E  ++ E ++  A   
Sbjct: 1622 AEELKKAEEEKKKV-EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

Query: 423  LELERMKKQHDEVM----EELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYK 478
             + E  +K+  E +    EE + A + K     +  ++++  K  E+  I A E     K
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA----K 1736

Query: 479  KEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQ 513
            KE +E     DK  K+AEE +K  +E    +H+ +
Sbjct: 1737 KEAEE-----DK--KKAEEAKKDEEEKKKIAHLKK 1764

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 21/152 (13%)

Query: 363  AQAMAEAENSRREAFEEALRRGKAEKDAIESIRRA-----KASESLYAEELKR----RKE 413
            A+A  +AE  R+   EEA +   A+K   E++++A      A E+  AEE +     RK 
Sbjct: 1202 AEAARKAEEERK--AEEARKAEDAKK--AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKF 1257

Query: 414  FEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVEL 473
             E  +A+       +K +     +EL+ A ++K   E++ AE  + A E ++K       
Sbjct: 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK------- 1310

Query: 474  LQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
                 K+ DE + + ++A K+A+  +K  +EA
Sbjct: 1311 -AEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 14/165 (8%)

Query: 357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEE 416
            L +++AQ   E      E  E   R  +AE++  E+    +  E+   +  +  K   E
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803

Query: 417 ALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQN 476
           AL   + EL  + ++   + E L+    + +  E ++ + ++  +EL + I S    ++ 
Sbjct: 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863

Query: 477 YKKEQDELQMERDKAVKE--------------AEELRKSRKEASS 507
            ++  +EL+ E +  + E               EEL +  +E  S
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 49/186 (26%)

Query: 360 DQLAQAMAEAENSRREAFEEAL-------RRGKAEK--------------------DAIE 392
           +++  A  E    RR+  EEA        R+ +AE+                      +E
Sbjct: 147 EEIINAKPEE---RRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLE 203

Query: 393 SIRRAKASESLYAEELKRRKEFEEALANGKL------------ELERMKKQHDEVMEELQ 440
            + R       Y E     +E E AL   KL            EL R++++ +E+ EEL+
Sbjct: 204 KLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELE 263

Query: 441 IALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRK 500
            A  +   L+S++       +EL +++    E L   K+E +EL+ E     +  EEL  
Sbjct: 264 EAEKEIEELKSEL-------EELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316

Query: 501 SRKEAS 506
             +E  
Sbjct: 317 ELEELE 322

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 25/97 (25%), Positives = 47/97 (48%)

Query: 409 KRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKII 468
           ++ +E EE +A  +  L  ++K+ +E+ EEL+    +   L  QI+   +    LE ++ 
Sbjct: 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743

Query: 469 SAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
              E +    KE  EL+ E ++  +  EE  +   EA
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 43/184 (23%)

Query: 341 DLQSSPPSVLDGSVDDNLYD-QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKA 399
           DL    P +++GS  D LY   L     +  +    A E  LR            R  +A
Sbjct: 569 DLD---PQLVEGSDSDTLYGVSLDLQRLDVPDY--AANETELRE-----------RLQQA 612

Query: 400 SESLYAEELKRRKEFEEALA---------------------NGKLELERMKKQHDEVMEE 438
            E+L +    ++K+ EE L                        +L+L+R++ +   + ++
Sbjct: 613 EEALQSAV-AKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDK 671

Query: 439 LQIAL-DQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEE 497
           L++A+ ++K   E+Q+ + D   K+L ++  +    L+  K +  EL+ ER    +  E 
Sbjct: 672 LELAIAERKQQAETQLRQLDAQLKQLLEQQQAF---LEALKDDFRELRTERLAKWQVVEG 728

Query: 498 LRKS 501
              +
Sbjct: 729 ELDN 732

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 10/138 (7%)

Query: 373 RREAFEEALRRGKAE--KDAIESIRRAKAS-ESLYAEELKRRKEFEEALANGKLELERMK 429
                E AL   K +  +  +E +    +  E    E  +  +E E+ +   K ELE ++
Sbjct: 221 ELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280

Query: 430 KQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERD 489
           ++ +E+ EEL    ++   LE +I+   +  +ELE +       L+  ++  +EL+ + +
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENE-------LEELEERLEELKEKIE 333

Query: 490 KAVKEAEELRKSRKEASS 507
              +E EE     +E   
Sbjct: 334 ALKEELEERETLLEELEQ 351

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 28/145 (19%), Positives = 57/145 (39%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           Q         N  R+  E   +  + E    E        E    E  +  +  E  L  
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE 480
            + ELE ++ + +E+ E+L+    + + LE QIA  +   + LE ++    +  +  ++E
Sbjct: 363 LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422

Query: 481 QDELQMERDKAVKEAEELRKSRKEA 505
            +EL  + ++A  +  +      E 
Sbjct: 423 IEELLKKLEEAELKELQAELEELEE 447

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 24/130 (18%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 382 RRGKAEKDAIESIRRAKASESLYAEELKRR-KEFEEALANGKLELERMKKQHDEVMEELQ 440
           R  K  ++ +  +           + LK   +  E+ L   + +LE +++Q +E+  EL 
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726

Query: 441 IALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRK 500
              ++   L+S++       +ELE+++    E L+  ++  +EL+ E +   +   +L++
Sbjct: 727 ALEEELEQLQSRL-------EELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 501 SRKEASSSSH 510
             +E      
Sbjct: 780 EIEELEEKRQ 789

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 385 KAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALD 444
            A K+  E I+  K       + +KR +  EE +   + ELE + ++ +E+  EL    +
Sbjct: 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221

Query: 445 QKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQD---ELQMERDKAVKEAEELRKS 501
           +   LE ++ E ++  +E+E+       L  + +K ++   EL+   ++  KE EEL + 
Sbjct: 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281

Query: 502 RKE 504
            KE
Sbjct: 282 VKE 284

Length = 880

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 28/192 (14%)

Query: 337 PSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRR 396
           P  ++L S    ++D   +DNL D L   +A A+    +  ++       E++ +E   +
Sbjct: 136 PVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEELERALK 195

Query: 397 AKASESL--YAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIA 454
            K  E L    EEL  R E +EA        ++++ + +   EEL+   ++K  L  ++ 
Sbjct: 196 EKREELLSKLEEELLARLESKEAA-----LEKQLRLEFEREKEELRKKYEEK--LRQELE 248

Query: 455 E-----SDQTAKELEQKIISAVELLQNYKKEQDE-LQMERD----------KAVKEAEEL 498
                   +   EL  +   A+EL + + KE  E ++ ER+            +K  E+ 
Sbjct: 249 RQAEAHEQKLKNELALQ---AIELQREFNKEIKEKVEEERNGRLAKLAELNSRLKGLEKA 305

Query: 499 RKSRKEASSSSH 510
             SR EA   +H
Sbjct: 306 LDSRSEAEDENH 317

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 368 EAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELER 427
              N  R    + L R + E+         K  E L A+ LK  KE E+     + EL+ 
Sbjct: 233 LKLNEERIDLLQELLRDEQEEIESSKQELEKEEEIL-AQVLKENKEEEKEKKLQEEELKL 291

Query: 428 MKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQME 487
           + K+ +E+  EL     +K   E ++ ES++  K+LE+++    E ++  +KE  EL+++
Sbjct: 292 LAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIK 351

Query: 488 RDKAVKEAEELRKSRKEASS 507
           R+   +E E+L K +++   
Sbjct: 352 REAEEEEEEQLEKLQEKLEQ 371

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 535 KIGEGGYGSIYKGLLR------HMQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLV 587
           K+GEG +G +YKG L+        +VA+K L    S +   EF +E    +    H N+V
Sbjct: 6   KLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKL-SHPNIV 64

Length = 258

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 0.002
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 7/146 (4%)

Query: 363  AQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGK 422
            A+   +AE +++   ++ +   KAE+       R +    LY EE K + E  +     K
Sbjct: 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619

Query: 423  LELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELL---QNYKK 479
            ++ E +KK  +E  +  Q+    K     +  ++++  K  E+  I A E     +  KK
Sbjct: 1620 IKAEELKKAEEEKKKVEQL----KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675

Query: 480  EQDELQMERDKAVKEAEELRKSRKEA 505
            + +E +   +   K AE L+K  +EA
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEA 1701

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 9/152 (5%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           +  Q    A  +     E+  +  +     +E  +  +    L  E   +  E  E LA 
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLER-QLEELEAQL-EELESKLDELAEELAE 341

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVE-------L 473
            + +LE +K++ + +  EL+    +   LES++ E ++  + L  K+             
Sbjct: 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

Query: 474 LQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
           ++  +   + L+  R++  +E EEL K  +EA
Sbjct: 402 IERLEARLERLEDRRERLQQEIEELLKKLEEA 433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 32/166 (19%)

Query: 373 RREAFEEA-------LRRGKAEK-------------DAIESIRRAKASESLYAEELKRRK 412
           RR  FEEA        RR + E+             D +  + R   S    AE+ +R K
Sbjct: 157 RRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYK 216

Query: 413 EFEEALANGKL-----ELERMKKQHDEVMEELQIALDQKSLLESQIAESD---QTAK--- 461
           E +  L   +L      LE ++++ +E+ EEL+ A ++   L +++ E +   +  +   
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276

Query: 462 -ELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEAS 506
            ELE++I    + L     E   L+ ++    +    L +  +E  
Sbjct: 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRR-KEFEEAL 418
           ++L + + E E    E  E+AL   + E + +E        E    EEL R+     + L
Sbjct: 680 EELEEKIEELEEKIAEL-EKALAELRKELEELEEELEQLRKE---LEELSRQISALRKDL 735

Query: 419 ANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYK 478
           A  + E+E+++++  ++ +EL     +   LE ++ E+++   E E +I      ++  K
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 479 KEQDELQMERDKAVKEAEELRKSRKEASS 507
           +E   L+   D+   E   L +       
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRE 824

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 6/151 (3%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASE-----SLYAEELKRRKEF 414
           ++  + +AEAE +  E  E  + + K E  A+        +E        A   +R +  
Sbjct: 771 EEAEEELAEAE-AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829

Query: 415 EEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELL 474
           E  +A  +  LE +++Q +E+ E+++    +   LE  I E +   + L  +  S  E L
Sbjct: 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889

Query: 475 QNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
              + E +EL  E  +   +  ELR+  +E 
Sbjct: 890 ALLRSELEELSEELRELESKRSELRRELEEL 920

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 11/141 (7%)

Query: 373 RREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQH 432
             E  EE  +  +  ++ ++ ++  K     Y +  +  +E+ + L   +  L R++++ 
Sbjct: 264 LEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323

Query: 433 DEVMEELQIALDQKSLLESQIAESDQTAKELE---------QKIISAVELLQNYKKEQDE 483
           + + E ++   +++  LE    +  +  K LE         ++  +  E L+  KK    
Sbjct: 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383

Query: 484 LQMERDKAVKEAEELRKSRKE 504
           L  E  K  KE EEL K+++E
Sbjct: 384 LTPE--KLEKELEELEKAKEE 402

Length = 880

>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 24/155 (15%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
            +LA+A        R+A  +A+ R K  +  +E  +             K  ++ E AL 
Sbjct: 38  SELAKA--------RQALAQAIARQKQLERKLEEAQARAE---------KLEEKAELALQ 80

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
            G  +L R      E +EE Q   D    LE+++ ++++  ++L++++ +  + +   + 
Sbjct: 81  AGNEDLAR------EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134

Query: 480 EQDELQMERDKAVKEAEELRKSRKEASSSSHMPQF 514
           +++ L   R  A K  E++ +S    SSSS M  F
Sbjct: 135 KKEAL-KARKAAAKAQEKVNRSLGGGSSSSAMAAF 168

Length = 225

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 11/142 (7%)

Query: 362 LAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG 421
           + +A  EAE  ++EA  EA       +  +E   + + +E L   E +R  + EE L   
Sbjct: 38  IEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE-LQRLE-RRLLQREETLDR- 94

Query: 422 KLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE- 480
             ++E + K+ + + ++ +   +++  L+ +  E ++   E  +++     L Q   KE 
Sbjct: 95  --KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEI 152

Query: 481 -----QDELQMERDKAVKEAEE 497
                ++E + E  K +KE EE
Sbjct: 153 LLEEVEEEARHEAAKLIKEIEE 174

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 535 KIGEGGYGSIYKGLLR-----HMQVAIKMLHP-HSLQGPSEFQQE 573
           K+GEG +G +YKG L+       +VA+K L    S +   +F +E
Sbjct: 2   KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKE 46

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 359 YDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEAL 418
            +++ + + E E    E  E  L   + E   +E       S+ L   EL    E +  +
Sbjct: 405 LEEIQEELEELEKELEEL-ERELEELEEEIKKLEEQINQLESKELMIAELAGAGE-KCPV 462

Query: 419 ANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISA----VELL 474
              +L  E  K+  +    EL+  L+++   E + AE  +  +ELE+++       +ELL
Sbjct: 463 CGQELPEEHEKELLELYELELE-ELEEELSREKEEAELREEIEELEKELRELEEELIELL 521

Query: 475 QNYKKEQDELQMERDKAVKEAEELRKSRKEASS 507
           +  +  ++EL+ + +K     EEL + +++   
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQL 554

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 26/166 (15%)

Query: 363  AQAMAEAENSRREAFEEALRRGKAEKDAIESIR----RAKASESLYAEELKRRKEFEEAL 418
            A+   +A+ ++++A EEA +  +A+K A E+ +    + KA E+  A+E K++ E  +  
Sbjct: 1427 AEEKKKADEAKKKA-EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485

Query: 419  ANGKLELERMKKQHDEV---------MEELQIALDQKSLLESQIAESDQTAKEL----EQ 465
               K + E  KK+ DE           +E + A + K   E++ AE  + A E     E+
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545

Query: 466  KIISAVELLQNYKKEQDELQME--------RDKAVKEAEELRKSRK 503
            K    ++  +  KK +++ + E        ++ A+++AEE +K+ +
Sbjct: 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591

Length = 2084

>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 31/155 (20%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
             LAQ +A  +   R+  E+  +  K E  A  ++   K +E L  E L      E+   
Sbjct: 44  QALAQVIARQKQLERKLEEQKEQAKKLENKARAALT--KGNEELAREALAEIATLEKQAE 101

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
                        +  + + + A++Q   L  Q+A        LE KI       Q  K 
Sbjct: 102 -----------ALETQLTQQRSAVEQ---LRKQLA-------ALETKI-------QQLKA 133

Query: 480 EQDELQMERDKAVKEAEELRKSRKEASSSSHMPQF 514
           ++  L+  R KA K  E +  S   AS+ S    F
Sbjct: 134 KKTALKA-RLKAAKAQEAVNTSLGSASTESATDSF 167

This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator. Length = 220

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 13/156 (8%)

Query: 352 GSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRR 411
           GSV D L  +  +        R+     AL   K  K+    IR  +     + + +K  
Sbjct: 129 GSVRDELEKEADELWKP--RGRKPEINVAL---KELKELEAEIREVQLKTRTWKDLVKAL 183

Query: 412 KEFEEALANGKLELERMKKQHDEVMEELQIALDQ---KSLLESQIAESDQTAKELEQKII 468
            E EE LAN + EL +++K+    +E L+  L     +  LE Q+A       E+     
Sbjct: 184 DEAEEELANLRKELRQLEKEKQR-LERLRRLLPLLAERKALEQQLAA----LGEVIDLPP 238

Query: 469 SAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKE 504
            AVE  +  + E    +   +   +  E L+    E
Sbjct: 239 DAVERYEEARAELRAARRNLELLTERLEALQAELDE 274

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 380 ALRRGKAEKDAIESIRRAKASESLYAEELKRRKEF-EEALANGKLELERMKKQHDEVMEE 438
           ++  G   K +  + +R          EL+ + E  EE L + K EL  ++   +E+  +
Sbjct: 651 SITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710

Query: 439 LQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEEL 498
           L+    Q   L+ ++A  ++  ++L+ ++    E L+  ++E +ELQ   ++  +E E L
Sbjct: 711 LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 499 RKSRKE 504
            ++  +
Sbjct: 771 EEALAK 776

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 9/145 (6%)

Query: 363  AQAMAEAENSRR-EAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG 421
            A  + +AE  ++ E  ++A    KAE+D   ++R+A+  E+  AEE +  +  +      
Sbjct: 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE--EAKKAEEARIEEVMKLYEEEK 1605

Query: 422  KLELERMKKQHDEVM--EELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
            K++ E  KK  +  +  EEL+ A ++K  +E    +  +  K+ E+  +   E     K 
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE--LKKAEEENKIKA 1663

Query: 480  EQDELQMERDKAVKEAEELRKSRKE 504
             ++  + E DK  K+AEE +K+ ++
Sbjct: 1664 AEEAKKAEEDK--KKAEEAKKAEED 1686

Length = 2084

>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 329 TEGVSTLPPS-----KEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRR 383
            EG   LPPS     +E         L+ S+DD    +L+Q          E  +E    
Sbjct: 1   LEGPLGLPPSLLEKAEEIRSEGGIERLERSLDD--LPELSQRN-------EEILDEIKEL 51

Query: 384 GKAEKDAIESIRRA-------KASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVM 436
              E+   E +R           S  L AE  +  +++   L        +++ + +E  
Sbjct: 52  LDEEESEDEQLRAKYGERWTRPPSSELTAELREELRKYRGYLEQASESDAQLRSKLEEHE 111

Query: 437 EELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAE 496
           E L++    +  LE+ +  S  +      ++   +  L+    + +EL+ ER+K ++E +
Sbjct: 112 ENLELLSGPEEELEALLPSSSPS---KTPEVSEQISRLRELLNKLNELKAEREKLLEELK 168

Query: 497 ELRKS 501
           E  + 
Sbjct: 169 EKAQD 173

The binding of the LYPxL motif of late HIV p6Gag and EIAV p9Gag to this domain is necessary for viral budding.This domain is generally central between an N-terminal Bro1 domain, pfam03097 and a C-terminal proline-rich domain. The retroviruses thus used this domain to hijack the ESCRT system of the cell. Length = 292

>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 14/94 (14%)

Query: 358 LYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKE-FEE 416
           L D   +A AE EN RR A E+     KA K AIES          +AE L   K+  E 
Sbjct: 51  LQDSFLRAKAETENVRRRAQEDV---AKAHKFAIES----------FAESLLPVKDSLEA 97

Query: 417 ALANGKLELERMKKQHDEVMEELQIALDQKSLLE 450
           ALA+   +LE++++  +  +++L  A ++  ++E
Sbjct: 98  ALADESGDLEKLREGVELTLKQLTSAFEKGRVVE 131

Length = 185

>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 16/158 (10%)

Query: 356 DNLYDQLAQAMAEAENSR---REAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRK 412
             + + L +   EA   R   R A ++ L + + +    +  ++   +E +   EL  + 
Sbjct: 38  SRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQD 97

Query: 413 EFEEALANGKLELERMKKQHDEVMEELQIALDQKSL-----LESQIAESDQTAKELEQKI 467
           E           LE +  + D+ +E L+  LD+ S      L++     +   K+ E   
Sbjct: 98  E-----IAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIE---KKRENNK 149

Query: 468 ISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA 505
                  +N KK ++ L++ER+K  ++  E     +  
Sbjct: 150 NEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFK 187

Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	591
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	99.93
PRK15456	142	universal stress protein UspG; Provisional	99.84
PRK15005	144	universal stress protein F; Provisional	99.82
PRK09982	142	universal stress protein UspD; Provisional	99.79
cd01987	124	USP_OKCHK USP domain is located between the N-term	99.79
PRK15118	144	universal stress global response regulator UspA; P	99.78
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.77
PRK10116	142	universal stress protein UspC; Provisional	99.75
PF00582	140	Usp: Universal stress protein family; InterPro: IP	99.74
PRK11175	305	universal stress protein UspE; Provisional	99.69
cd00293	130	USP_Like Usp: Universal stress protein family. The	99.63
PRK11175	305	universal stress protein UspE; Provisional	99.62
COG0589	154	UspA Universal stress protein UspA and related nuc	99.58
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.37
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	99.32
PRK10490	895	sensor protein KdpD; Provisional	98.87
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	98.74
KOG0192	362	consensus Tyrosine kinase specific for activated (	98.38
KOG0595	429	consensus Serine/threonine-protein kinase involved	98.3
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	98.15
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	98.11
cd01984	86	AANH_like Adenine nucleotide alpha hydrolases supe	98.08
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	98.03
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	98.0
PHA02988	283	hypothetical protein; Provisional	98.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	98.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	97.96
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	97.95
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	97.93
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	97.87
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	97.87
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	97.84
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	97.83
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	97.83
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.81
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	97.8
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	97.76
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	97.75
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.69
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	97.69
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	97.67
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	97.65
KOG0575	592	consensus Polo-like serine/threonine protein kinas	97.64
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	97.63
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	97.62
KOG2052	513	consensus Activin A type IB receptor, serine/threo	97.61
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	97.61
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	97.58
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	97.57
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	97.57
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	97.57
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	97.56
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	97.56
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	97.55
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	97.55
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	97.55
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	97.53
KOG3653	534	consensus Transforming growth factor beta/activin	97.53
PLN00034	353	mitogen-activated protein kinase kinase; Provision	97.53
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	97.52
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	97.52
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	97.51
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	97.5
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	97.5
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	97.49
PTZ00263	329	protein kinase A catalytic subunit; Provisional	97.49
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	97.49
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	97.47
PRK09188	365	serine/threonine protein kinase; Provisional	97.47
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	97.46
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	97.46
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	97.46
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	97.45
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	97.45
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	97.45
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	97.45
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	97.45
KOG0605	550	consensus NDR and related serine/threonine kinases	97.43
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	97.43
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	97.42
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	97.42
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	97.41
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	97.4
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	97.39
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	97.39
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	97.39
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	97.38
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	97.38
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	97.38
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	97.38
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	97.37
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	97.37
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	97.37
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	97.36
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	97.36
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	97.36
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	97.36
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	97.35
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	97.35
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	97.34
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	97.33
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	97.33
PTZ00036	440	glycogen synthase kinase; Provisional	97.33
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	97.33
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	97.32
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	97.32
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	97.32
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	97.32
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	97.32
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	97.32
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	97.32
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	97.31
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	97.31
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	97.31
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	97.31
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	97.3
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	97.3
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	97.3
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	97.3
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	97.3
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	97.29
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	97.29
KOG0586	596	consensus Serine/threonine protein kinase [General	97.28
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	97.28
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	97.27
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	97.27
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	97.27
PHA03212	391	serine/threonine kinase US3; Provisional	97.26
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	97.26
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	97.26
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	97.25
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	97.25
KOG0577	948	consensus Serine/threonine protein kinase [Signal	97.25
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	97.23
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	97.23
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	97.23
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	97.23
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	97.23
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	97.22
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	97.22
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	97.22
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	97.22
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.21
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	97.21
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	97.21
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	97.21
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	97.2
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	97.2
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	97.2
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	97.2
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	97.2
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	97.2
KOG0661	538	consensus MAPK related serine/threonine protein ki	97.19
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	97.19
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	97.19
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	97.19
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	97.19
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	97.19
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	97.18
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	97.18
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	97.18
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	97.18
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	97.17
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	97.17
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	97.17
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	97.17
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	97.17
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	97.16
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	97.16
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	97.16
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	97.16
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	97.16
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	97.16
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	97.16
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	97.15
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	97.15
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	97.15
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	97.14
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	97.14
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	97.14
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	97.14
KOG0198	313	consensus MEKK and related serine/threonine protei	97.13
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	97.13
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	97.13
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	97.13
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	97.13
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	97.13
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	97.12
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	97.12
PLN00009	294	cyclin-dependent kinase A; Provisional	97.12
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	97.12
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	97.12
KOG0201	467	consensus Serine/threonine protein kinase [Signal	97.12
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	97.12
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	97.12
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	97.12
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	97.12
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	97.11
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	97.11
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	97.11
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	97.1
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	97.1
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	97.09
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	97.09
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	97.09
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	97.09
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	97.08
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	97.08
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	97.08
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	97.08
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	97.08
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	97.07
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	97.07
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	97.06
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	97.06
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	97.06
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	97.06
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	97.05
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.05
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	97.04
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	97.04
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	97.04
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	97.04
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	97.04
KOG0598	357	consensus Ribosomal protein S6 kinase and related	97.03
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	97.03
PHA03211	461	serine/threonine kinase US3; Provisional	97.02
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	97.02
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	97.02
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	97.02
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	97.01
KOG0583	370	consensus Serine/threonine protein kinase [Signal	97.01
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	97.01
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	97.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	97.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	96.99
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	96.99
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	96.98
KOG0611	668	consensus Predicted serine/threonine protein kinas	96.98
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	96.98
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	96.98
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	96.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	96.97
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	96.96
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	96.96
PHA03209	357	serine/threonine kinase US3; Provisional	96.96
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	96.95
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	96.95
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	96.95
PLN03224	507	probable serine/threonine protein kinase; Provisio	96.95
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	96.94
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	96.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	96.93
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	96.93
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	96.92
KOG0581	364	consensus Mitogen-activated protein kinase kinase	96.92
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	96.92
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	96.92
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	96.92
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	96.91
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	96.91
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	96.9
KOG0582	516	consensus Ste20-like serine/threonine protein kina	96.9
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	96.89
PTZ00024	335	cyclin-dependent protein kinase; Provisional	96.88
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	96.88
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	96.88
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	96.88
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	96.86
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	96.86
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	96.86
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	96.85
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	96.84
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	96.84
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	96.83
PTZ00283	496	serine/threonine protein kinase; Provisional	96.82
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	96.82
KOG1989	738	consensus ARK protein kinase family [Signal transd	96.81
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	96.81
TIGR02432	189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	96.79
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	96.79
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	96.79
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	96.78
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.78
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	96.78
PTZ00266	1021	NIMA-related protein kinase; Provisional	96.75
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	96.74
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	96.74
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	96.72
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	96.7
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	96.69
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	96.69
PHA03207	392	serine/threonine kinase US3; Provisional	96.68
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	96.66
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	96.63
KOG4721	904	consensus Serine/threonine protein kinase, contain	96.63
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	96.63
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	96.6
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	96.6
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	96.58
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	96.56
PTZ00267	478	NIMA-related protein kinase; Provisional	96.53
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	96.53
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	96.51
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	96.49
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	96.49
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.49
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	96.46
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.45
PRK10345	210	hypothetical protein; Provisional	96.43
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	96.39
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	96.39
PTZ00284	467	protein kinase; Provisional	96.37
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.37
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	96.36
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	96.34
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	96.3
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	96.3
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	96.27
PHA03210	501	serine/threonine kinase US3; Provisional	96.25
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	96.24
KOG4717	864	consensus Serine/threonine protein kinase [Signal	96.24
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	96.21
PRK11637	428	AmiB activator; Provisional	96.17
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	96.14
KOG0578	550	consensus p21-activated serine/threonine protein k	96.08
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	96.07
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	95.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	95.92
cd01992	185	PP-ATPase N-terminal domain of predicted ATPase of	95.88
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	95.83
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.82
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	95.79
PRK09039	343	hypothetical protein; Validated	95.68
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	95.65
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	95.63
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	95.63
PLN03159	832	cation/H(+) antiporter 15; Provisional	95.51
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.48
PRK09039	343	hypothetical protein; Validated	95.48
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.4
KOG0607	463	consensus MAP kinase-interacting kinase and relate	95.36
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	95.35
PF01171	182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	95.3
PRK00106	535	hypothetical protein; Provisional	95.29
PRK12704	520	phosphodiesterase; Provisional	95.26
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.26
KOG0694	694	consensus Serine/threonine protein kinase [Signal	95.19
COG4372	499	Uncharacterized protein conserved in bacteria with	95.16
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	95.15
KOG0584	632	consensus Serine/threonine protein kinase [General	95.1
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.04
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	95.0
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.0
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.93
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	94.91
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	94.9
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	94.87
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.87
KOG1152	772	consensus Signal transduction serine/threonine kin	94.86
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	94.85
KOG0589	426	consensus Serine/threonine protein kinase [General	94.85
PRK09605	535	bifunctional UGMP family protein/serine/threonine	94.8
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	94.66
PHA02882	294	putative serine/threonine kinase; Provisional	94.63
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	94.55
PRK12704	520	phosphodiesterase; Provisional	94.38
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	94.38
PRK04863	1486	mukB cell division protein MukB; Provisional	94.37
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.28
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.26
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.22
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.17
KOG0576	829	consensus Mitogen-activated protein kinase kinase	94.15
KOG2891	445	consensus Surface glycoprotein [General function p	94.05
PRK00106	535	hypothetical protein; Provisional	94.0
PRK02224	880	chromosome segregation protein; Provisional	93.96
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	93.92
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	93.73
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	93.72
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.62
COG4372	499	Uncharacterized protein conserved in bacteria with	93.38
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.38
KOG0610	459	consensus Putative serine/threonine protein kinase	93.31
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.24
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	93.19
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.18
cd01993	185	Alpha_ANH_like_II This is a subfamily of Adenine n	93.11
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	93.08
KOG1027	903	consensus Serine/threonine protein kinase and endo	93.04
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	93.01
KOG0933	1174	consensus Structural maintenance of chromosome pro	92.94
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	92.9
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.79
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.59
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	92.55
PRK10696	258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	92.49
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	92.36
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	92.28
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.28
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	92.22
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	92.22
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.17
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.09
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	92.02
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	91.93
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	91.65
PRK04863	1486	mukB cell division protein MukB; Provisional	91.59
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.59
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.4
COG0037	298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	91.37
TIGR00268	252	conserved hypothetical protein TIGR00268. The N-te	91.25
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.19
KOG0690	516	consensus Serine/threonine protein kinase [Signal	91.08
PRK02224	880	chromosome segregation protein; Provisional	91.04
PRK03918	880	chromosome segregation protein; Provisional	91.03
KOG0996	1293	consensus Structural maintenance of chromosome pro	90.94
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.89
PRK12342	254	hypothetical protein; Provisional	90.84
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	90.73
KOG1003	205	consensus Actin filament-coating protein tropomyos	90.43
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.32
KOG0996	1293	consensus Structural maintenance of chromosome pro	90.27
smart00090	237	RIO RIO-like kinase.	90.16
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	90.13
KOG0964	1200	consensus Structural maintenance of chromosome pro	90.08
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	90.01
PRK10884	206	SH3 domain-containing protein; Provisional	89.87
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	89.79
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.63
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	89.61
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	89.55
KOG0933	1174	consensus Structural maintenance of chromosome pro	89.4
KOG0964	1200	consensus Structural maintenance of chromosome pro	89.29
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	89.13
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	89.0
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	88.99
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	88.9
PRK13820	394	argininosuccinate synthase; Provisional	88.89
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	88.85
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	88.43
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	88.34
PRK03359	256	putative electron transfer flavoprotein FixA; Revi	88.14
PRK04778	569	septation ring formation regulator EzrA; Provision	88.1
cd01990	202	Alpha_ANH_like_I This is a subfamily of Adenine nu	88.08
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	87.84
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	87.38
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.34
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	87.24
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	86.85
COG0515	384	SPS1 Serine/threonine protein kinase [General func	86.74
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.71
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	86.56
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	86.35
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.19
KOG2891	445	consensus Surface glycoprotein [General function p	86.17
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	85.85
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	85.85
COG2433	652	Uncharacterized conserved protein [Function unknow	85.74
PRK10884	206	SH3 domain-containing protein; Provisional	85.71
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	85.62
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	85.53
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	85.38
PHA02562	562	46 endonuclease subunit; Provisional	85.38
PRK00409	782	recombination and DNA strand exchange inhibitor pr	85.32
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	85.23
KOG2751	447	consensus Beclin-like protein [Signal transduction	84.87
PRK12274	218	serine/threonine protein kinase; Provisional	84.73
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	84.62
COG2433	652	Uncharacterized conserved protein [Function unknow	84.34
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	84.27
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	84.25
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	84.14
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	84.13
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	84.11
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	84.11
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	84.05
COG5185	622	HEC1 Protein involved in chromosome segregation, i	83.66
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	83.46
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	83.24
KOG0979	1072	consensus Structural maintenance of chromosome pro	83.04
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	83.01
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	82.98
KOG0596	677	consensus Dual specificity; serine/threonine and t	82.95
KOG0971	1243	consensus Microtubule-associated protein dynactin	82.9
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	82.65
KOG1167	418	consensus Serine/threonine protein kinase of the C	82.53
KOG2751	447	consensus Beclin-like protein [Signal transduction	82.22
PTZ00121	2084	MAEBL; Provisional	82.15
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	82.07
PRK12705	508	hypothetical protein; Provisional	81.89
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	81.77
cd01994	194	Alpha_ANH_like_IV This is a subfamily of Adenine n	81.59
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	81.55
KOG4807	593	consensus F-actin binding protein, regulates actin	81.31
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	81.3
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	81.19
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	81.14
PRK10660	436	tilS tRNA(Ile)-lysidine synthetase; Provisional	81.04
PTZ00121	2084	MAEBL; Provisional	81.03

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=99.93  E-value=1.7e-25  Score=207.23  Aligned_cols=143  Identities=36%  Similarity=0.580  Sum_probs=123.1

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +||||||+| +.|.+||+||++++  .+++|++|||.++..+.+...+  .     ......+.+..++.++++|+++..
T Consensus         1 ~ILVavD~S-~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~   72 (146)
T cd01989           1 SVAVAVDKD-KKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG--K-----LEVASAYKQEEDKEAKELLLPYRC   72 (146)
T ss_pred             CEEEEecCc-cccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc--c-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999 99999999999988  5889999999987543221111  0     022344556677888999999999


Q ss_pred             HHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhcc-CCcchHHHHhccCCCccEEEEEcCC
Q 007740          124 ICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMD-LKSKKAISVRQQAPASCHIWFICNG  199 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~G-s~s~Va~~V~~~Ap~~C~V~vV~kg  199 (591)
                      .|...|+.++..++.+++|++.|+++|+++++|+||||+||++++.|+|+| |   |+.+|++++|++|+|+||++|
T Consensus        73 ~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gss---va~~Vi~~a~~~c~Vlvv~~~  146 (146)
T cd01989          73 FCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSD---VASSVLKEAPDFCTVYVVSKG  146 (146)
T ss_pred             HHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCc---hhHHHHhcCCCCceEEEEeCc
Confidence            999899999999999889999999999999999999999999999999987 5   999999999999999999997

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK15456 universal stress protein UspG; Provisional

Probab=99.84  E-value=2.3e-20  Score=172.44  Aligned_cols=138  Identities=16%  Similarity=0.162  Sum_probs=108.9

Q ss_pred             CEEEEeecCCh-HHHHHHHHHHHHhc-CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQV-KESKSVLLWALQNS-GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~-~~S~~Al~wAl~~~-~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||||+|. +.|.+|++||+.++ .+++|++|||.++...... .. ..      .....+.+..++.+++.|..+.
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~~~l~llhv~~~~~~~~~-~~-~~------~~~~~~~~~~~~~~~~~l~~~~   74 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLLHVLPGSASLSL-HR-FA------ADVRRFEEHLQHEAEERLQTMV   74 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHHHHhcCCeEEEEEEecCcccccc-cc-cc------cchhhHHHHHHHHHHHHHHHHH
Confidence            58999999982 38999999999887 4568999999987532111 10 00      1123455566777788888887


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      ..+...+++++..+..| +|++.|+++|+++++|+||||+||++ +.+.|+||   |+.+|+++++  |+|+||.
T Consensus        75 ~~~~~~~~~v~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS---~a~~v~~~a~--~pVLvV~  142 (142)
T PRK15456         75 SHFTIDPSRIKQHVRFG-SVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGS---NASSVIRHAN--LPVLVVR  142 (142)
T ss_pred             HHhCCCCcceEEEEcCC-ChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCc---cHHHHHHcCC--CCEEEeC
Confidence            77665678888766665 78999999999999999999999976 88899998   9999999999  9999983

>PRK15005 universal stress protein F; Provisional

Probab=99.82  E-value=1.6e-19  Score=166.70  Aligned_cols=138  Identities=14%  Similarity=0.207  Sum_probs=104.1

Q ss_pred             CEEEEeecCChHH--HHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKE--SKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        45 ~kIlVAVD~S~~~--S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      ++||||||+| +.  +.+|++||++++  .+++|++|||+++.+.....+..... ..  ..    ....++.+++.|..
T Consensus         3 ~~ILv~~D~s-~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~-~~--~~----~~~~~~~~~~~l~~   74 (144)
T PRK15005          3 RTILVPIDIS-DSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSA-EL--PA----MDDLKAEAKSQLEE   74 (144)
T ss_pred             ccEEEecCCC-chhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccc-cc--hH----HHHHHHHHHHHHHH
Confidence            5899999999 77  589999999988  68999999999865322111110000 00  01    12234455566666


Q ss_pred             HHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      +...+...+++++..+..| +|++.|+++|+++++|+||||+|+ +++.+.++||   ++.+|++++|  |+||||.
T Consensus        75 ~~~~~~~~~~~~~~~v~~G-~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS---~a~~vl~~a~--cpVlvVr  144 (144)
T PRK15005         75 IIKKFKLPTDRVHVHVEEG-SPKDRILELAKKIPADMIIIASHR-PDITTYLLGS---NAAAVVRHAE--CSVLVVR  144 (144)
T ss_pred             HHHHhCCCCCceEEEEeCC-CHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecc---hHHHHHHhCC--CCEEEeC
Confidence            6666666677777776665 789999999999999999999994 6799999999   9999999999  9999983

>PRK09982 universal stress protein UspD; Provisional

Probab=99.79  E-value=1.8e-18  Score=160.21  Aligned_cols=134  Identities=14%  Similarity=0.145  Sum_probs=101.4

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||||+| +.|.+||+||+.++  .+++|+++||.++.+... .+..++       ....+.+..++.+++.|.++.
T Consensus         4 k~ILvavD~S-~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~l~~~~   74 (142)
T PRK09982          4 KHIGVAISGN-EEDALLVNKALELARHNDAHLTLIHIDDGLSELY-PGIYFP-------ATEDILQLLKNKSDNKLYKLT   74 (142)
T ss_pred             eEEEEEecCC-cchHHHHHHHHHHHHHhCCeEEEEEEccCcchhc-hhhhcc-------chHHHHHHHHHHHHHHHHHHH
Confidence            6899999999 99999999999988  799999999997653211 011111       012233445566667777776


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      ..+.  ...++..+.. ++|++.|+++|++.++|+||||+| ++++.+++  +   ||.+|+++++  |+|+||..
T Consensus        75 ~~~~--~~~~~~~v~~-G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~--~---va~~V~~~s~--~pVLvv~~  139 (142)
T PRK09982         75 KNIQ--WPKTKLRIER-GEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM--P---AYRGMINKMS--ADLLIVPF  139 (142)
T ss_pred             HhcC--CCcceEEEEe-cCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH--H---HHHHHHhcCC--CCEEEecC
Confidence            6553  2344444444 589999999999999999999986 89999888  3   9999999999  99999953

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=99.79  E-value=1.8e-18  Score=155.55  Aligned_cols=121  Identities=12%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +||||||+| +.++.||+||+.++  .++.|++|||.++...      .                 ....+++.|+.+..
T Consensus         1 ~Ilv~vd~s-~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~------~-----------------~~~~~~~~l~~~~~   56 (124)
T cd01987           1 RILVCISGG-PNAERLIRRAARLADRLKAPWYVVYVETPRLN------R-----------------LSEAERRRLAEALR   56 (124)
T ss_pred             CEEEEECCC-cchHHHHHHHHHHHHHhCCCEEEEEEecCccc------c-----------------CCHHHHHHHHHHHH
Confidence            599999999 99999999999988  6889999999875421      0                 01234567788888


Q ss_pred             HHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          124 ICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      .+.+.++.+  .++.+++++++|+++++++++|+||||+||++++.++++||   ++.+|++++ ..|+|||+
T Consensus        57 ~~~~~~~~~--~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs---~~~~v~~~a-~~~~v~v~  123 (124)
T cd01987          57 LAEELGAEV--VTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGS---LVDRLLRRA-GNIDVHIV  123 (124)
T ss_pred             HHHHcCCEE--EEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhccc---HHHHHHHhC-CCCeEEEe
Confidence            888777754  45667789999999999999999999999999999999999   999999999 34999997

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=99.78  E-value=1.9e-18  Score=159.83  Aligned_cols=134  Identities=15%  Similarity=0.185  Sum_probs=96.9

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||||+| +.|..||+||+.++  .+++|+||||..+....  ..+..+      .....+.+...+...+.|..  
T Consensus         4 ~~ILvavD~S-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~l~~--   72 (144)
T PRK15118          4 KHILIAVDLS-PESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL--YTGLID------VNLGDMQKRISEETHHALTE--   72 (144)
T ss_pred             eEEEEEccCC-hhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh--hhhhhh------cchHHHHHHHHHHHHHHHHH--
Confidence            6899999999 99999999999988  58899999995332111  011000      01122333333444444444  


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                       ++...|+.+...++..++|++.|+++|+++++|+||||+|| +.+.+  +||   ||.+|+++++  |+|+||..
T Consensus        73 -~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~--lgS---va~~v~~~a~--~pVLvv~~  139 (144)
T PRK15118         73 -LSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWSK--LMS---SARQLINTVH--VDMLIVPL  139 (144)
T ss_pred             -HHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHHH--HHH---HHHHHHhhCC--CCEEEecC
Confidence             34566888765666666899999999999999999999997 44443  467   9999999999  99999963

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=99.77  E-value=7.5e-18  Score=152.35  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=110.9

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +||||||++ +.+..+|+||..++  .+++|+++||++++.....       .         ......+..++.+..+..
T Consensus         1 ~ILv~vd~s-~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~   63 (132)
T cd01988           1 RILVPVANP-NTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP-------S---------QLEVNVQRARKLLRQAER   63 (132)
T ss_pred             CEEEecCCc-hhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc-------c---------hhHHHHHHHHHHHHHHHH
Confidence            599999999 99999999999988  6889999999987532110       0         011234566788899999


Q ss_pred             HHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          124 ICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      .+...|++++..+..++++...|+++++++++|+||||+++++++.+.++||   ++.+|+++++  |+|++|.
T Consensus        64 ~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs---~~~~v~~~~~--~pvlvv~  132 (132)
T cd01988          64 IAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGG---VIDQVLESAP--CDVAVVK  132 (132)
T ss_pred             HhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCc---hHHHHHhcCC--CCEEEeC
Confidence            9989999998888777789999999999999999999999999999999998   9999999999  9999983

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK10116 universal stress protein UspC; Provisional

Probab=99.75  E-value=2.1e-17  Score=152.14  Aligned_cols=133  Identities=18%  Similarity=0.230  Sum_probs=104.8

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||+|+| +.+..||++|+.++  .+++|+++||++++....  .  +     .....+.+.+...+++++.|..+ 
T Consensus         4 ~~ILv~~D~s-~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--~--~-----~~~~~~~~~~~~~~~~~~~l~~~-   72 (142)
T PRK10116          4 SNILVAVAVT-PESQQLLAKAVSIARPVNGKISLITLASDPEMYN--Q--F-----AAPMLEDLRSVMQEETQSFLDKL-   72 (142)
T ss_pred             ceEEEEccCC-cchHHHHHHHHHHHHHhCCEEEEEEEccCcccch--h--h-----hHHHHHHHHHHHHHHHHHHHHHH-
Confidence            6999999999 99999999999988  588999999987643211  0  1     11223445555555556666554 


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                        +...|++....++..+++.+.|+++|+++++|+||||+||++++.+.+  |   |+.+|+++++  |+|+||.
T Consensus        73 --~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s---~a~~v~~~~~--~pVLvv~  138 (142)
T PRK10116         73 --IQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--C---SAKRVIASSE--VDVLLVP  138 (142)
T ss_pred             --HHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--H---HHHHHHhcCC--CCEEEEe
Confidence              455688766666667789999999999999999999999999999875  5   9999999999  9999984

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=99.74  E-value=2.1e-17  Score=148.78  Aligned_cols=135  Identities=20%  Similarity=0.294  Sum_probs=101.4

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||+|++ +.+..|++||+.++  .+++|++|||.++........          ........ .............
T Consensus         3 ~~Ilv~~d~~-~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~   70 (140)
T PF00582_consen    3 KRILVAIDGS-EESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSA----------AEDEESEE-EAEEEEQARQAEA   70 (140)
T ss_dssp             SEEEEEESSS-HHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHH----------HHHHHHHH-HHHHHHHHHHHHH
T ss_pred             CEEEEEECCC-HHHHHHHHHHHHHHHhhCCeEEEEEeecccccccccc----------cccccccc-ccchhhhhhhHHH
Confidence            6999999999 99999999999988  699999999998764321100          00000000 0011111111111


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      ..+...+.......+..+++.++|+++++++++|+||||+++++++.+.++|+   ++.+|++++|  |+|+||
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs---~~~~l~~~~~--~pVlvv  139 (140)
T PF00582_consen   71 EEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGS---VAEKLLRHAP--CPVLVV  139 (140)
T ss_dssp             HHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHH---HHHHHHHHTS--SEEEEE
T ss_pred             HHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCC---HHHHHHHcCC--CCEEEe
Confidence            44555667777777778899999999999999999999999999999999888   9999999999  999998

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>PRK11175 universal stress protein UspE; Provisional

Probab=99.69  E-value=3.3e-16  Score=162.77  Aligned_cols=142  Identities=11%  Similarity=0.100  Sum_probs=113.0

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||+|+| +.|..||.||+.++  .+++|++|||.++.... ..+.      +.........+...+..++.|+.+.
T Consensus         4 ~~ILv~~D~s-~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~   75 (305)
T PRK11175          4 QNILVVIDPN-QDDQPALRRAVYLAQRNGGKITAFLPIYDFSYE-MTTL------LSPDEREAMRQGVISQRTAWIREQA   75 (305)
T ss_pred             ceEEEEcCCC-ccccHHHHHHHHHHHhcCCCEEEEEeccCchhh-hhcc------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999 99999999999988  68899999998653211 1110      1112222233333445667788887


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcCC
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNG  199 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~kg  199 (591)
                      ..+...|++++..++..+++.+.|+++|.++++|+||||++|.+++.+.++||   ++..|++++|  |+||+|..+
T Consensus        76 ~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs---~~~~l~~~~~--~pvlvv~~~  147 (305)
T PRK11175         76 KPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTP---TDWHLLRKCP--CPVLMVKDQ  147 (305)
T ss_pred             HHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccCh---hHHHHHhcCC--CCEEEeccc
Confidence            77777899998877766789999999999999999999999999999999998   9999999999  999999753

>cd00293 USP_Like Usp: Universal stress protein family

Probab=99.63  E-value=6.3e-15  Score=131.26  Aligned_cols=128  Identities=24%  Similarity=0.394  Sum_probs=108.3

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +||||+|++ ..+..+++||++.+  .++.|+++||.++....+.                .+.+....+.++.|..+..
T Consensus         1 ~ilv~i~~~-~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~   63 (130)
T cd00293           1 RILVAVDGS-EESERALRWAARLARRLGAELVLLHVVDPPPSSAA----------------ELAELLEEEARALLEALRE   63 (130)
T ss_pred             CEEEEeCCC-HHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch----------------hHHHHHHHHHHHHHHHHHH
Confidence            599999999 99999999999988  6899999999876532110                2233455667889999999


Q ss_pred             HHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          124 ICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      .|...|+++...+..+ ++.++|+++++++++|+||||+++++.+.+.+.|+   ++.+++++++  |+||+|
T Consensus        64 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~---~~~~ll~~~~--~pvliv  130 (130)
T cd00293          64 ALAEAGVKVETVVLEG-DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGS---VAERVLRHAP--CPVLVV  130 (130)
T ss_pred             HHhcCCCceEEEEecC-CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeecc---HHHHHHhCCC--CCEEeC
Confidence            8888899988777766 45999999999999999999999999999999888   9999999987  999985

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PRK11175 universal stress protein UspE; Provisional

Probab=99.62  E-value=3.6e-15  Score=155.02  Aligned_cols=138  Identities=16%  Similarity=0.212  Sum_probs=101.0

Q ss_pred             CCEEEEeecCChHH-------HHHHHHHHHHhc--C-CCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKE-------SKSVLLWALQNS--G-GKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQD  113 (591)
Q Consensus        44 ~~kIlVAVD~S~~~-------S~~Al~wAl~~~--~-g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (591)
                      .++||||+|+| +.       +..||++|+..+  . +++|+||||+++.....  ....+.     .....+.+..+..
T Consensus       152 ~~~Ilva~D~s-~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~  223 (305)
T PRK11175        152 GGKILVAVNVA-SEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINI--AIELPE-----FDPSVYNDAIRGQ  223 (305)
T ss_pred             CCeEEEEeCCC-CCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhc--cccccc-----cchhhHHHHHHHH
Confidence            47999999998 54       368999999877  4 88999999987543211  001110     0112233333334


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEE
Q 007740          114 MHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHI  193 (591)
Q Consensus       114 ~~~lL~~~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V  193 (591)
                      ..+.+..+   +...++.+...++..+++...|+++|+++++|+||||++|++++.++|+||   ++.+|++++|  |+|
T Consensus       224 ~~~~l~~~---~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS---~a~~v~~~~~--~pV  295 (305)
T PRK11175        224 HLLAMKAL---RQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGN---TAEHVIDHLN--CDL  295 (305)
T ss_pred             HHHHHHHH---HHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecc---hHHHHHhcCC--CCE
Confidence            44444444   444577765455555689999999999999999999999999999999999   9999999999  999


Q ss_pred             EEEc
Q 007740          194 WFIC  197 (591)
Q Consensus       194 ~vV~  197 (591)
                      ++|.
T Consensus       296 Lvv~  299 (305)
T PRK11175        296 LAIK  299 (305)
T ss_pred             EEEc
Confidence            9995

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=99.58  E-value=5.6e-14  Score=129.58  Aligned_cols=144  Identities=19%  Similarity=0.247  Sum_probs=113.6

Q ss_pred             CCEEEEeec-CChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVA-KQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD-~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      -++|++++| ++ +.+..|+.+|+..+  .+..+.++||.++..............    . ............++.+..
T Consensus         5 ~~~il~~~d~~s-~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~   78 (154)
T COG0589           5 YKKILVAVDVGS-EAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADA----P-IPLSEEELEEEAEELLAE   78 (154)
T ss_pred             cceEEEEeCCCC-HHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccc----h-hhhhHHHHHHHHHHHHHH
Confidence            469999999 99 99999999999987  678899999997754321111100000    0 111223345666788888


Q ss_pred             HHHHHHHcCCce-EEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          121 CLLICRQMGVRA-EKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       121 ~~~~c~~~gV~~-e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      +.+.....|+.. +..+..|.++...|++++.+.++|+||||++|++++.++++||   |+.+|+++++  |+|++|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGs---vs~~v~~~~~--~pVlvv~~  152 (154)
T COG0589          79 AKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGS---VAEKVLRHAP--CPVLVVRS  152 (154)
T ss_pred             HHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeeh---hHHHHHhcCC--CCEEEEcc
Confidence            888899999984 7777777666899999999999999999999999999999998   9999999999  99999863

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=7.4e-13  Score=141.20  Aligned_cols=76  Identities=45%  Similarity=0.641  Sum_probs=68.6

Q ss_pred             cccccCHHHHHHhhcCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          514 FFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       514 ~~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+.|+|.+|..||+||+..++||+||||.||+|.+. |+.||||++.....+...+|.+|+.++ ++++|||||+|+
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~l-s~l~H~Nlv~Ll  137 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEIL-SRLRHPNLVKLL  137 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHH-hcCCCcCcccEE
Confidence            5788999999999999999999999999999999998 589999999775543145699999999 999999999986

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=99.32  E-value=1.3e-11  Score=130.52  Aligned_cols=101  Identities=12%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--C--CCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--G--GKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD  119 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~--g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~  119 (591)
                      -+||||||||| +.|++|+++|++++  .  +++|++|||.++.....  ..                ......++++++
T Consensus         5 ykkILVavDGS-e~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~--~~----------------~~~~~~~eelle   65 (357)
T PRK12652          5 ANRLLVPVADS-VTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP--EG----------------QDELAAAEELLE   65 (357)
T ss_pred             cCeEEEEeCCC-HHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc--ch----------------hHHHHHHHHHHH
Confidence            37999999999 99999999999988  2  48999999998643211  00                112234455666


Q ss_pred             HHHHHHHH------cCCceEEEEEec-------CChHHHHHHHHHHcCCCEEEEccC
Q 007740          120 MCLLICRQ------MGVRAEKLDTES-------ESTEKGILELISHYGIRKLVMGAA  163 (591)
Q Consensus       120 ~~~~~c~~------~gV~~e~~vie~-------~~~~~~Ive~a~~~~idlIVmGs~  163 (591)
                      .+.+.+..      .||++++.++.+       ++|++.|++||++++||+||||-.
T Consensus        66 ~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~  122 (357)
T PRK12652         66 RVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE  122 (357)
T ss_pred             HHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence            66666554      599999888774       699999999999999999999975

>PRK10490 sensor protein KdpD; Provisional

Probab=98.87  E-value=1.7e-08  Score=119.77  Aligned_cols=125  Identities=15%  Similarity=0.258  Sum_probs=99.9

Q ss_pred             CCCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           43 IEDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        43 ~~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      ..++|||+|+++ +.+.+.+++|.+++  .++.+++|||..+..      ...+                .+. ..-+..
T Consensus       249 ~~eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~------~~~~----------------~~~-~~~l~~  304 (895)
T PRK10490        249 TRDAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRL------HRLP----------------EKK-RRAILS  304 (895)
T ss_pred             cCCeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCc------CcCC----------------HHH-HHHHHH
Confidence            568999999999 99999999999988  688999999986631      0000                011 223444


Q ss_pred             HHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcCC
Q 007740          121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNG  199 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~kg  199 (591)
                      +..+|++.|.+  .+++.++|+++.|++||++++++.||||.++++++  ++.||   ++..+++.++ ..+|+||...
T Consensus       305 ~~~lA~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s---~~~~l~r~~~-~idi~iv~~~  375 (895)
T PRK10490        305 ALRLAQELGAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRES---FADRLARLGP-DLDLVIVALD  375 (895)
T ss_pred             HHHHHHHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCC---HHHHHHHhCC-CCCEEEEeCC
Confidence            44688888876  55778999999999999999999999999999876  44556   9999999998 5999999643

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=98.74  E-value=1.5e-07  Score=105.95  Aligned_cols=133  Identities=15%  Similarity=0.185  Sum_probs=111.5

Q ss_pred             cccCCCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 007740           40 ASVIEDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNH  117 (591)
Q Consensus        40 ~~~~~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  117 (591)
                      .+...++|||+|+++ ..|.+.++||...+  .++..++|||-.|....                       ..+.....
T Consensus       244 ~~~~~e~ilvcI~~~-~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~-----------------------~~~~~~~~  299 (890)
T COG2205         244 VWAARERILVCISGS-PGSEKLIRRAARLASRLHAKWTAVYVETPELHR-----------------------LSEKEARR  299 (890)
T ss_pred             cccccceEEEEECCC-CchHHHHHHHHHHHHHhCCCeEEEEEecccccc-----------------------ccHHHHHH
Confidence            344668999999999 99999999999988  78999999998775311                       11233456


Q ss_pred             HHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          118 LDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       118 L~~~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      |.....+|++-|  ++++++.+++++++|++||..+++++||||.+.++.+.++|.|+   .+.++++.++ ..+|++|.
T Consensus       300 l~~~~~Lae~lG--ae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~---l~~~L~~~~~-~idv~ii~  373 (890)
T COG2205         300 LHENLRLAEELG--AEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGS---LADRLAREAP-GIDVHIVA  373 (890)
T ss_pred             HHHHHHHHHHhC--CeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhccc---HHHHHHhcCC-CceEEEee
Confidence            777788888766  45678889999999999999999999999999999999999877   9999999998 59999998


Q ss_pred             CCcee
Q 007740          198 NGNLI  202 (591)
Q Consensus       198 kgk~~  202 (591)
                      .+...
T Consensus       374 ~~~~~  378 (890)
T COG2205         374 LDAPP  378 (890)
T ss_pred             CCCCc
Confidence            76554

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=98.38  E-value=3.1e-07  Score=98.03  Aligned_cols=56  Identities=29%  Similarity=0.547  Sum_probs=48.2

Q ss_pred             CccccccceeEEEEEEcCeE-EEEEEccCCCCCC--hhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLRHMQ-VAIKMLHPHSLQG--PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~g~~-VAVK~L~~~~~~~--~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|+||.||+|.++|+. ||||++.......  ...|.+|+.+| .+++|||||+|+
T Consensus        47 ~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il-~~l~HpNIV~f~  105 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLL-SRLRHPNIVQFY  105 (362)
T ss_pred             hhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            45999999999999999988 9999996533222  56899999999 999999999875

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.30  E-value=4.7e-07  Score=94.95  Aligned_cols=62  Identities=24%  Similarity=0.364  Sum_probs=52.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||.|.||.||+|.+.  |+.||||.+...  .....+-...|+.+| ..|+|||||.|+
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iL-kel~H~nIV~l~   75 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKIL-KELKHPNIVRLL   75 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHH-HhcCCcceeeEE
Confidence            45666677999999999999997  899999999665  333456678999999 999999999885

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=98.15  E-value=1.1e-06  Score=89.02  Aligned_cols=57  Identities=28%  Similarity=0.252  Sum_probs=46.9

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..++|+|+||.|||+.-+  |..||||++-..  ...-.+.-.+|+..| .+++|||||.|+
T Consensus         7 LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmL-KqLkH~NLVnLi   67 (396)
T KOG0593|consen    7 LGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRML-KQLKHENLVNLI   67 (396)
T ss_pred             hhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHH-HhcccchHHHHH
Confidence            458999999999999987  899999999432  222245568999999 999999999875

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=98.11  E-value=2.5e-06  Score=93.42  Aligned_cols=68  Identities=24%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             cccccCHHHHHHhhcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          514 FFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       514 ~~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+.+.++++...       ..||.|.||+||+|.|.| .||||+|.....  ...+.|.+||..+ .+-||-||+.|+
T Consensus       385 ~~WeIp~~ev~l~-------~rIGsGsFGtV~Rg~whG-dVAVK~Lnv~~pt~~qlqaFKnEVa~l-kkTRH~NIlLFM  454 (678)
T KOG0193|consen  385 EEWEIPPEEVLLG-------ERIGSGSFGTVYRGRWHG-DVAVKLLNVDDPTPEQLQAFKNEVAVL-KKTRHENILLFM  454 (678)
T ss_pred             cccccCHHHhhcc-------ceeccccccceeeccccc-ceEEEEEecCCCCHHHHHHHHHHHHHH-hhcchhhheeee
Confidence            4567778887654       479999999999999886 799999966433  3467899999999 999999999764

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)

Probab=98.08  E-value=1.3e-05  Score=67.32  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             EEEeecCChHHHHHHHHHHHHhc-CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           47 IYVAVAKQVKESKSVLLWALQNS-GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLIC  125 (591)
Q Consensus        47 IlVAVD~S~~~S~~Al~wAl~~~-~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c  125 (591)
                      |+||++|+ ..|..++.||.+.. .+..++++|+.                                             
T Consensus         1 ilv~~sgg-~dS~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------------   34 (86)
T cd01984           1 ILVALSGG-LDSSVLLHLAKRLKSGGPEVVALVVV---------------------------------------------   34 (86)
T ss_pred             CEEEeeCC-HHHHHHHHHHHHHHhcCCCEEEEEeH---------------------------------------------
Confidence            68999999 99999999999875 46677777774                                             


Q ss_pred             HHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhcc-CCcchHHHHhccCCCccEEEE
Q 007740          126 RQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMD-LKSKKAISVRQQAPASCHIWF  195 (591)
Q Consensus       126 ~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~G-s~s~Va~~V~~~Ap~~C~V~v  195 (591)
                                     .....+.++++++++|+||+|+++.....+.+.| +   ++.++++.++  |+|+.
T Consensus        35 ---------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~---~~~~~~~~~~--~~vl~   85 (86)
T cd01984          35 ---------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASA---NVLVVIKGAG--IPVLT   85 (86)
T ss_pred             ---------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchh---hhhhcccccC--CceeC
Confidence                           3456778889999999999999999999988877 6   8899999998  88763

The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=98.03  E-value=3.7e-06  Score=84.94  Aligned_cols=68  Identities=22%  Similarity=0.342  Sum_probs=58.1

Q ss_pred             HHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          522 EIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       522 el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |++.+|++|.....||+|+||.||+|...  +..|++|.+..........|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   71 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALH-SYLKHRNIVQYL   71 (268)
T ss_pred             CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHH-HhcCCCCeeeee
Confidence            45678889999999999999999999876  678999998765555567899999999 999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=98.00  E-value=3.8e-06  Score=86.33  Aligned_cols=61  Identities=28%  Similarity=0.398  Sum_probs=48.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-C-hhHHHHHHHHHHcCCCCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-G-PSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-~-~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      ++|...|.|++|.||.||+|.-.  +..||+|++...... + .-.-.+||.+| .+++|||||.+
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniL-l~~~H~NIV~v  140 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINIL-LKARHPNIVEV  140 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHH-HhcCCCCeeee
Confidence            34556689999999999999876  789999999764321 1 12248999999 99999999975

>PHA02988 hypothetical protein; Provisional

Probab=98.00  E-value=1e-05  Score=83.07  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          515 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+.++.++|     ++.....||+|++|.||+|.+.|..||||.+.......   ...|.+|+.+| .+++|||||+++
T Consensus        12 ~~~i~~~~i-----~~~~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~nIv~~~   84 (283)
T PHA02988         12 IKCIESDDI-----DKYTSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNL-RRIDSNNILKIY   84 (283)
T ss_pred             ceecCHHHc-----CCCCCeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHH-HhcCCCCEEEEe
Confidence            456677777     33334689999999999999999999999996643333   46788999999 999999999875

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=98.00  E-value=6.3e-06  Score=89.89  Aligned_cols=57  Identities=30%  Similarity=0.515  Sum_probs=51.3

Q ss_pred             CCccccccceeEEEEEEcC-eEEEEEEccCCCCCC-hhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~g-~~VAVK~L~~~~~~~-~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||+|.||.|..+...| +.||||+|++....+ ..+|..|+.+| ++++|||||.|+
T Consensus       543 ~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiL-sqLkhPNIveLv  601 (807)
T KOG1094|consen  543 KEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKIL-SRLKHPNIVELL  601 (807)
T ss_pred             hhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHH-hccCCCCeeEEE
Confidence            4679999999999999996 999999999876655 48999999999 999999999885

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=2.6e-06  Score=83.91  Aligned_cols=62  Identities=23%  Similarity=0.431  Sum_probs=52.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.-...||+|.||.||.|+.+  +-.||+|++...   ..+-..++.+|++|- +.++||||++++
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIq-s~L~hpnilrlY   88 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQ-SHLRHPNILRLY   88 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEee-cccCCccHHhhh
Confidence            46788899999999999999997  679999999542   233457899999999 999999999875

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=1.6e-06  Score=98.16  Aligned_cols=57  Identities=23%  Similarity=0.384  Sum_probs=49.4

Q ss_pred             CCccccccceeEEEEEEcC-------eEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||+|.||.||+|...|       +.||||.|+..... ...+|++|++.| +.+.|||||+|+
T Consensus       491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLl-a~l~H~nIVrLl  555 (774)
T KOG1026|consen  491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELL-AELQHPNIVRLL  555 (774)
T ss_pred             hhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHH-HhccCCCeEEEE
Confidence            4579999999999998763       67999999765444 678999999999 999999999986

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=97.93  E-value=7e-06  Score=85.26  Aligned_cols=56  Identities=27%  Similarity=0.404  Sum_probs=46.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+++|.|+||.||+|.+.  +..||||+..++...    -.+|+.+| .++.|||||+|+
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~----knrEl~im-~~l~HpNIV~L~   83 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY----KNRELQIM-RKLDHPNIVRLL   83 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc----CcHHHHHH-HhcCCcCeeeEE
Confidence            344578999999999999997  689999998665432    24789999 999999999986

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.87  E-value=8.7e-06  Score=87.59  Aligned_cols=57  Identities=28%  Similarity=0.264  Sum_probs=46.6

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||+|.||.|||+.-.  |..||+|++..+..  ....-..+||.|| .+|.||||++|.
T Consensus       122 i~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~IL-r~l~HpNIikL~  182 (560)
T KOG0600|consen  122 IEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKIL-RRLDHPNIIKLE  182 (560)
T ss_pred             HHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHH-HhcCCCccccee
Confidence            358999999999999864  89999999966542  2233458999999 999999999874

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=97.87  E-value=4.5e-06  Score=93.67  Aligned_cols=77  Identities=22%  Similarity=0.380  Sum_probs=63.3

Q ss_pred             CCcccccCHHHHHHhhcCCCc---------CCccccccceeEEEEEEc--C---eEEEEEEccCCC-CCChhHHHHHHHH
Q 007740          512 PQFFSDFSFSEIEGATHNFDP---------SLKIGEGGYGSIYKGLLR--H---MQVAIKMLHPHS-LQGPSEFQQEVGA  576 (591)
Q Consensus       512 ~~~~~~~s~~el~~aT~~F~~---------~~~iG~G~~G~Vykg~l~--g---~~VAVK~L~~~~-~~~~~~F~~Ev~i  576 (591)
                      ......++|++-..|...|..         ..+||.|.||.||+|.|+  |   ..||||.|.... .....+|+.|..|
T Consensus       604 k~YiDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsI  683 (996)
T KOG0196|consen  604 KTYIDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASI  683 (996)
T ss_pred             eeecCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhh
Confidence            345677889888888777743         578999999999999996  4   689999997643 3446789999999


Q ss_pred             HHcCCCCCCcccc
Q 007740          577 YESFIFHFNLVDS  589 (591)
Q Consensus       577 l~s~lrHpNLV~l  589 (591)
                      | ++..||||+.|
T Consensus       684 M-GQFdHPNIIrL  695 (996)
T KOG0196|consen  684 M-GQFDHPNIIRL  695 (996)
T ss_pred             c-ccCCCCcEEEE
Confidence            9 99999999987

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=97.84  E-value=1.1e-05  Score=87.22  Aligned_cols=67  Identities=22%  Similarity=0.376  Sum_probs=55.7

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccccceeEEEEEEcCe-EEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          515 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHM-QVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~g~-~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+.+..+++...       +.||+|-||.||.|.++|. .||||.+..... ....|.+|+.+| .+++|+|||+|+
T Consensus       200 ~wei~r~~l~l~-------~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-~~~~f~~Ea~iM-k~L~H~~lV~l~  267 (468)
T KOG0197|consen  200 PWEIPREELKLI-------RELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-SPEAFLREAQIM-KKLRHEKLVKLY  267 (468)
T ss_pred             CeeecHHHHHHH-------HHhcCCccceEEEEEEcCCCcccceEEecccc-ChhHHHHHHHHH-HhCcccCeEEEE
Confidence            456666666554       4799999999999999964 999999977533 357899999999 999999999986

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=97.83  E-value=9.3e-06  Score=88.32  Aligned_cols=61  Identities=30%  Similarity=0.456  Sum_probs=49.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||||+-.  +..||+|.+.....  ...+...+||+|+ .+++|||||.++
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~-r~lkHpniv~m~   67 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRIL-RSLKHPNIVEML   67 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHH-HhcCCcchhhHH
Confidence            3444457999999999999876  57899999966432  3356689999999 999999999875

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=97.83  E-value=3.9e-05  Score=86.74  Aligned_cols=57  Identities=30%  Similarity=0.443  Sum_probs=48.6

Q ss_pred             CCccccccceeEEEEEEc--C----eEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--H----MQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g----~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||.|.||+||||.+-  |    .+||||++... +.....+|..|+-+| +++.||||++||
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~m-asldHpnl~RLL  764 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRM-ASLDHPNLLRLL  764 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHH-hcCCCchHHHHh
Confidence            468999999999999873  3    68999999654 444567899999999 999999999986

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.81  E-value=8.8e-06  Score=89.10  Aligned_cols=61  Identities=31%  Similarity=0.544  Sum_probs=53.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++...++||-|.||.||.|.|.  ..+||||.|..+.. ..++|+.|..+| .-|.|||||+|+
T Consensus       267 tdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM-eveEFLkEAAvM-KeikHpNLVqLL  329 (1157)
T KOG4278|consen  267 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVM-KEIKHPNLVQLL  329 (1157)
T ss_pred             hheeeeeccCCCcccceeeeeeeccceeeehhhhhhcch-hHHHHHHHHHHH-HhhcCccHHHHh
Confidence            34566789999999999999998  58999999976544 468999999999 999999999986

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.80  E-value=1.6e-05  Score=86.95  Aligned_cols=57  Identities=32%  Similarity=0.511  Sum_probs=47.1

Q ss_pred             CCccccccceeEEEEEEc---C---eEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR---H---MQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~---g---~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||+|.||.||+|.+.   +   ..||||......   .....+|.+|.++| .+++|||||+|+
T Consensus       162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvM-r~l~H~NVVr~y  227 (474)
T KOG0194|consen  162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVM-RQLNHPNVVRFY  227 (474)
T ss_pred             cceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            469999999999999986   2   238999986422   33467899999999 999999999986

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=97.76  E-value=2.4e-05  Score=87.02  Aligned_cols=56  Identities=27%  Similarity=0.427  Sum_probs=49.0

Q ss_pred             CccccccceeEEEEEEc---C--eEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR---H--MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~---g--~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||+|.||.|++|.|.   |  -.||||+|..+... ...+|++|+.+| -+++||||++|+
T Consensus       116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M-~~L~H~hliRLy  177 (1039)
T KOG0199|consen  116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHM-LKLQHPHLIRLY  177 (1039)
T ss_pred             HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHH-HhccCcceeEEe
Confidence            37999999999999996   4  47899999876554 578899999999 999999999986

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=97.75  E-value=3e-05  Score=77.66  Aligned_cols=57  Identities=28%  Similarity=0.385  Sum_probs=46.4

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCC-CC-hhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QG-PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~-~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||+|.||.||+|+-.  |+.||||++..... .+ ...-.+|+..| ..++||||+.|+
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~L-qel~h~nIi~Li   67 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLL-QELKHPNIIELI   67 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHH-HHccCcchhhhh
Confidence            457999999999999875  89999999965422 22 23468999999 999999999875

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=1.2e-05  Score=94.23  Aligned_cols=64  Identities=27%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             hhcCCCcCCccccccceeEEEEE--EcCeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGL--LRHMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~--l~g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...+|.+...||+||||.|||..  ++|+.+|||++.-.. ........+||..| ++++|||+|+++
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~L-ArLnHpNVVRYy  543 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLL-ARLNHPNVVRYY  543 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHH-hhcCCcceeeee
Confidence            34567777899999999999986  459999999995432 22234467899999 999999999875

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=97.69  E-value=1.5e-05  Score=88.98  Aligned_cols=57  Identities=26%  Similarity=0.503  Sum_probs=49.2

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||+||||.||+|.-+  |..||||.++..+ ....+.+.+|+++| .+++|||||+++
T Consensus        18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~Eieil-kKLnh~NIVk~f   77 (732)
T KOG4250|consen   18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEIL-KKLNHPNIVKLF   77 (732)
T ss_pred             hhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHH-HHcCchhhhhhc
Confidence            457999999999999976  9999999997743 34467789999999 999999999875

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=97.67  E-value=4.5e-05  Score=80.71  Aligned_cols=75  Identities=19%  Similarity=0.267  Sum_probs=61.0

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          515 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++.....++...+++|.....||+|+||.||+|...  |..||||++...  .......+.+|+.++ .+++||||++++
T Consensus         4 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l-~~l~h~~iv~~~   82 (345)
T cd07877           4 YRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL-KHMKHENVIGLL   82 (345)
T ss_pred             chhhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHH-HHcCCCccccee
Confidence            455566778888899998899999999999999864  789999998642  222345688999999 999999999864

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=4.5e-05  Score=80.49  Aligned_cols=59  Identities=24%  Similarity=0.287  Sum_probs=47.0

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-------ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-------GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-------~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      -....||.|+||.|-.+.-.  |..||||+++.....       ......+|++|| .+++|||||++.
T Consensus       175 ii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieIL-kkL~HP~IV~~~  242 (475)
T KOG0615|consen  175 IISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEIL-KKLSHPNIVRIK  242 (475)
T ss_pred             EeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHH-HhcCCCCEEEEe
Confidence            34678999999999999886  899999999663211       122347999999 999999999874

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.64  E-value=5.3e-05  Score=83.33  Aligned_cols=60  Identities=18%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             CCcCCccccccceeEEEEEE-c-CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLL-R-HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l-~-g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||+|||+.||.+.- . |..||+|++...   .....+...+||+|- +.|.|||||+|+
T Consensus        20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIH-r~L~HpnIV~f~   84 (592)
T KOG0575|consen   20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIH-RSLKHPNIVQFY   84 (592)
T ss_pred             eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHH-HhcCCCcEEeee
Confidence            55678899999999999987 4 899999999653   233456789999999 999999999985

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=97.63  E-value=6.5e-05  Score=80.26  Aligned_cols=61  Identities=21%  Similarity=0.344  Sum_probs=50.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||||++...  .......+.+|+.++ ..++||||++++
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   65 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKML-CFFKHDNVLSAL   65 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHH-HhCCCCCcCCHh
Confidence            4677889999999999999864  899999998542  222346789999999 999999999764

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=97.62  E-value=5.1e-05  Score=78.98  Aligned_cols=61  Identities=25%  Similarity=0.358  Sum_probs=49.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--Ce----EEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HM----QVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~----~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|...+.||+|+||.||+|.+.  |.    .||||.+.... ......|.+|+.++ ..+.||||++++
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~~~   75 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM-ASVDNPHVCRLL   75 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            4777789999999999999874  33    48999996532 23356799999999 999999999875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.61  E-value=3.2e-05  Score=82.17  Aligned_cols=58  Identities=22%  Similarity=0.453  Sum_probs=45.2

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHc-CCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYES-FIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s-~lrHpNLV~li  590 (591)
                      ......||+|.||.||+|.++|..||||+|...   ....|.+|-+|-+. -|||+||+.||
T Consensus       213 I~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~sr---dE~SWfrEtEIYqTvmLRHENILgFI  271 (513)
T KOG2052|consen  213 IVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSR---DERSWFRETEIYQTVMLRHENILGFI  271 (513)
T ss_pred             eEEEEEecCccccceeeccccCCceEEEEeccc---chhhhhhHHHHHHHHHhccchhhhhh
Confidence            344568999999999999999999999999653   23456667666522 46999999886

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.61  E-value=4.5e-05  Score=89.60  Aligned_cols=57  Identities=33%  Similarity=0.430  Sum_probs=48.9

Q ss_pred             CCccccccceeEEEEEEc---C----eEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR---H----MQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~---g----~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||.|.||.||.|.+.   |    ..||||.|... +.+...+|.+|..+| +++.|||||+||
T Consensus       697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m-~~f~HpNiv~li  761 (1025)
T KOG1095|consen  697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLM-SKFDHPNIVSLI  761 (1025)
T ss_pred             eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHH-hcCCCcceeeEE
Confidence            468999999999999986   3    34999999764 445678899999999 999999999986

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=97.58  E-value=7.4e-05  Score=77.13  Aligned_cols=61  Identities=25%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             CCCcCCccccccceeEEEEEEc------------------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCcccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR------------------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~------------------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .|....+||+|+||.||++.+.                  +..||||.+..... .....|.+|+.++ .+++|||||++
T Consensus         6 ~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~   84 (304)
T cd05096           6 HLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKIL-SRLKDPNIIRL   84 (304)
T ss_pred             hCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHH-hhcCCCCeeEE
Confidence            3445678999999999999753                  24699999976432 2345799999999 99999999987


Q ss_pred             c
Q 007740          590 F  590 (591)
Q Consensus       590 i  590 (591)
                      +
T Consensus        85 ~   85 (304)
T cd05096          85 L   85 (304)
T ss_pred             E
Confidence            4

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=97.57  E-value=6.6e-05  Score=81.14  Aligned_cols=59  Identities=25%  Similarity=0.454  Sum_probs=50.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      -|. +.+||.|.||+||-|..+  |+.||||+++..  ......++.+||.|| .+++||.||.|
T Consensus       566 if~-devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaIL-q~l~HPGiV~l  628 (888)
T KOG4236|consen  566 IFA-DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAIL-QNLHHPGIVNL  628 (888)
T ss_pred             hhh-HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHH-HhcCCCCeeEE
Confidence            344 468999999999999997  899999999763  334567899999999 99999999976

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=97.57  E-value=4e-05  Score=77.43  Aligned_cols=56  Identities=32%  Similarity=0.592  Sum_probs=46.7

Q ss_pred             CccccccceeEEEEEEc------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|.||.||+|.+.      +..|+||.+..... .....|.+|+..+ .+++||||++++
T Consensus         5 ~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l-~~l~h~ni~~~~   67 (259)
T PF07714_consen    5 KQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQIL-RKLRHPNIVKLY   67 (259)
T ss_dssp             EEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHH-HTHSBTTBE-EE
T ss_pred             eEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccc-cccccccccccc
Confidence            47999999999999998      58999999965332 2367899999999 999999999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=97.57  E-value=8.2e-05  Score=74.44  Aligned_cols=60  Identities=28%  Similarity=0.429  Sum_probs=51.5

Q ss_pred             CCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...|..||||.+..... ....|.+|+.++ .+++||||++++
T Consensus         7 ~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l-~~l~~~~i~~~~   66 (256)
T cd05039           7 ELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDST-AAQAFLAEASVM-TTLRHPNLVQLL   66 (256)
T ss_pred             hccceeeeecCCCceEEEEEecCcEEEEEEeccchh-HHHHHHHHHHHH-HhcCCcceeeeE
Confidence            455567899999999999999999999999965433 467899999999 999999999865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.56  E-value=7.5e-05  Score=76.04  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=49.9

Q ss_pred             CCCcCCccccccceeEEEEEEc------CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++.+.      +..||||.+..........|.+|+.++ .+++|||||+++
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   71 (284)
T cd05081           5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEIL-KSLQHDNIVKYK   71 (284)
T ss_pred             cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHH-HhCCCCCeeEEE
Confidence            3455568999999999999752      578999999765544466899999999 999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=97.56  E-value=7.8e-05  Score=75.42  Aligned_cols=61  Identities=23%  Similarity=0.321  Sum_probs=48.9

Q ss_pred             CCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.+.     +..||+|++..... .....|.+|+.++ .+++|||||+++
T Consensus         6 ~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   72 (266)
T cd05064           6 SIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTL-GQFDHSNIVRLE   72 (266)
T ss_pred             HeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHH-hcCCCCCcCeEE
Confidence            3555678999999999999864     46899999975432 2245799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=97.55  E-value=0.0001  Score=75.56  Aligned_cols=61  Identities=26%  Similarity=0.370  Sum_probs=49.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||.|+||.||+|...  +..||+|.+.... ......+.+|+.++ .+++||||++++
T Consensus         6 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   69 (288)
T cd07871           6 TYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLL-KNLKHANIVTLH   69 (288)
T ss_pred             cceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHH-HhCCCCCEeeEE
Confidence            4555678999999999999876  6899999986432 22345688999999 999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=97.55  E-value=0.00012  Score=77.20  Aligned_cols=71  Identities=21%  Similarity=0.283  Sum_probs=54.7

Q ss_pred             CHHHHHHhh----cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          519 SFSEIEGAT----HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       519 s~~el~~aT----~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +..++..++    ++|.....||.|+||.||+|...  |..||||++...  .......|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~~~   80 (342)
T cd07879           2 YREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLL-KHMQHENVIGLL   80 (342)
T ss_pred             chhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHH-HhcCCCCccchh
Confidence            444555554    66777789999999999999875  789999998542  122235688999999 999999999764

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.55  E-value=1.5e-05  Score=80.26  Aligned_cols=57  Identities=25%  Similarity=0.382  Sum_probs=46.4

Q ss_pred             CCccccccceeEEEEEE--cCeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLL--RHMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l--~g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||.|.||.|||..-  .|..||.|.++-...  ....++..|+.+| .+++|||||+++
T Consensus        24 l~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lL-kQL~HpNIVqYy   84 (375)
T KOG0591|consen   24 LKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLL-KQLNHPNIVQYY   84 (375)
T ss_pred             HHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHH-HhcCCchHHHHH
Confidence            35799999999999854  389999999974332  2346689999999 999999999764

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=97.53  E-value=0.00012  Score=75.56  Aligned_cols=62  Identities=26%  Similarity=0.373  Sum_probs=50.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++.... ......+.+|+.++ ..++|||||+++
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   69 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLL-KGLKHANIVLLH   69 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHH-hhCCCCCcCeEE
Confidence            45777789999999999999885  7899999986432 22335678999999 999999999764

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=97.53  E-value=3.6e-05  Score=82.41  Aligned_cols=54  Identities=30%  Similarity=0.464  Sum_probs=44.1

Q ss_pred             CccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHH-cCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYE-SFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~-s~lrHpNLV~li  590 (591)
                      .+||+|.||.||||.+.+..||||++..   +....|++|=+|.. -.+.|+||++||
T Consensus       216 eli~~Grfg~V~KaqL~~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi  270 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQLDNRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFI  270 (534)
T ss_pred             HHhhcCccceeehhhccCceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhh
Confidence            4689999999999999999999999954   33456887765540 478999999986

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=97.53  E-value=8.5e-05  Score=78.77  Aligned_cols=56  Identities=23%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||.|+||.||++...  |..||||++..... .....|.+|+.++ .+++|||||+++
T Consensus        80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~  138 (353)
T PLN00034         80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEIL-RDVNHPNVVKCH  138 (353)
T ss_pred             hhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHH-HhCCCCCcceee
Confidence            47999999999999886  78999999954322 2246789999999 999999999864

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=97.52  E-value=0.00011  Score=78.70  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=50.3

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--C------------CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--L------------QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~------------~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+.|.....||.|.||.|-.+.-.  +..||||+|+...  .            ...+...+||.|| .+++|||||+|+
T Consensus        96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIail-Kkl~H~nVV~Li  174 (576)
T KOG0585|consen   96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAIL-KKLHHPNVVKLI  174 (576)
T ss_pred             hhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHH-HhcCCcCeeEEE
Confidence            355666778999999999988765  8999999995421  0            1135789999999 999999999986

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=97.52  E-value=7.9e-05  Score=79.95  Aligned_cols=62  Identities=26%  Similarity=0.503  Sum_probs=49.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...       +..||||++.... ......|.+|+.++ ..+ +|||||+++
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il-~~l~~HpnIv~l~  105 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVL-SYLGNHINIVNLL  105 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHH-HHhcCCcceeeee
Confidence            35666789999999999999742       4689999996533 23346789999999 989 899999874

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=97.51  E-value=0.00014  Score=73.28  Aligned_cols=61  Identities=26%  Similarity=0.345  Sum_probs=50.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||+|++..........+.+|+.++ .+++||||++++
T Consensus        10 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l-~~~~h~~ii~~~   72 (267)
T cd06646          10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMV-KECKHCNIVAYF   72 (267)
T ss_pred             hcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHH-HhcCCCCeeeee
Confidence            4555678999999999999974  789999999654444456788999999 999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=97.50  E-value=0.0001  Score=74.32  Aligned_cols=62  Identities=26%  Similarity=0.349  Sum_probs=50.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|.+.     ...||||.+..... .....|..|+.++ .+++||||++++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   71 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIM-GQFDHPNIIRLE   71 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHH-HhCCCCCcceEe
Confidence            45777889999999999999985     24799999865432 2346799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=97.50  E-value=8.6e-05  Score=76.39  Aligned_cols=61  Identities=16%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||||++....   ......|.+|+.++ .+++||||++++
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   67 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVL-KEVSHPFIIRLF   67 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHH-HhCCCCcHhhhH
Confidence            4666678999999999999886  7899999985421   22345688999999 999999999864

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=97.49  E-value=0.0001  Score=77.03  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=48.2

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|...  |..||||++...  .......|.+|+.++ .+++|||||+++
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~   65 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLL-RLLRHPDIVEIK   65 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHH-HhCCCCCEeeec
Confidence            444568999999999999875  789999998642  223345689999999 999999999763

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=97.49  E-value=7.9e-05  Score=78.26  Aligned_cols=61  Identities=20%  Similarity=0.270  Sum_probs=49.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||||.+...   .......|.+|+.++ .+++|||||+++
T Consensus        19 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   84 (329)
T PTZ00263         19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSIL-MELSHPFIVNMM   84 (329)
T ss_pred             heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            4555678999999999999986  789999998542   223346789999999 999999999875

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=97.49  E-value=9.7e-05  Score=80.20  Aligned_cols=62  Identities=24%  Similarity=0.438  Sum_probs=48.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      +.|....+||.|+||.||+|...       +..||||++..... .....|.+|+.++ .++. |||||+++
T Consensus        37 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l-~~l~~HpnIv~l~  107 (400)
T cd05105          37 DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIM-THLGPHLNIVNLL  107 (400)
T ss_pred             cceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHH-HhcCCCCCeeeEE
Confidence            34555678999999999999864       24699999965432 2346799999999 9995 99999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=97.47  E-value=0.00016  Score=73.80  Aligned_cols=61  Identities=23%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  +..||||++...  .......|.+|+.++ .+++||||++++
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   66 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKML-RTLKQENIVELK   66 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHH-HhCCCccccchh
Confidence            4666778999999999999986  688999998543  223346788999999 999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.47  E-value=0.00012  Score=78.49  Aligned_cols=63  Identities=10%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEc---CeEEEEEEccCCC-----CCChhHHHHHHHHHHcCCCCCCccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPHS-----LQGPSEFQQEVGAYESFIFHFNLVD  588 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~---g~~VAVK~L~~~~-----~~~~~~F~~Ev~il~s~lrHpNLV~  588 (591)
                      ..-.+|.....||+|+||.||+|...   |..||||++....     ......|.+|+.+| .+++|+|+|.
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL-~~L~h~~iv~   85 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRAL-KTVRGIGVVP   85 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHH-HhccCCCCCc
Confidence            34456888889999999999999874   6778999875321     11245699999999 9999999985

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=97.46  E-value=0.00015  Score=75.09  Aligned_cols=61  Identities=26%  Similarity=0.364  Sum_probs=49.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  +..||||.+.... ......+.+|+.++ .+++||||++++
T Consensus         7 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   70 (309)
T cd07872           7 TYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLL-KDLKHANIVTLH   70 (309)
T ss_pred             ceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHH-HhCCCCCcceEE
Confidence            3555678999999999999876  6889999986433 22345688999999 999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.46  E-value=8.2e-05  Score=79.05  Aligned_cols=62  Identities=16%  Similarity=0.174  Sum_probs=50.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||++...  |+.||||++....   ......|.+|+.++ ..++||||++++
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il-~~l~h~~iv~~~   67 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDIL-AEADNPWVVKLY   67 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhCCCCCCcceE
Confidence            35777789999999999999885  7899999995421   22345688999999 999999999874

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=97.46  E-value=0.00013  Score=79.20  Aligned_cols=62  Identities=24%  Similarity=0.415  Sum_probs=48.7

Q ss_pred             cCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCCC-ChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ++|.....||+|+||.||+|.+.+       ..||||++...... ....|.+|+.+| .++. |||||+++
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l-~~l~~H~niv~~~  107 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIM-SHLGPHLNIVNLL  107 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHH-HhcCCCCCeEEEE
Confidence            345556789999999999998753       57999999654222 235689999999 9997 99999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=97.45  E-value=0.00019  Score=72.90  Aligned_cols=61  Identities=33%  Similarity=0.430  Sum_probs=49.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ||.....||.|+||.||+|...  |..||||.+....  ......|.+|+.++ .+++||||++++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   65 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL-KELNHPNIVKLL   65 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHH-HhcCCCCCcchh
Confidence            4666788999999999999885  7899999986432  22335789999999 999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=97.45  E-value=0.00014  Score=73.10  Aligned_cols=61  Identities=26%  Similarity=0.515  Sum_probs=50.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||.|+||.||+|... +..||||.+.... .....|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l-~~l~h~~i~~~~   67 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIM-KKLRHPKLIQLY   67 (261)
T ss_pred             hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHH-HHCCCCCcccee
Confidence            44666779999999999999986 6789999986543 3357799999999 999999999764

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=97.45  E-value=9.8e-05  Score=79.26  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=49.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||++....   ......|.+|+.++ .+++|||||+++
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il-~~l~h~~iv~l~   67 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDIL-AEADNEWVVKLY   67 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHH-HhcCCCCeeeeE
Confidence            4666778999999999999886  6899999996432   22345689999999 999999999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=97.45  E-value=6.9e-05  Score=78.68  Aligned_cols=62  Identities=21%  Similarity=0.320  Sum_probs=48.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|....+||.|+||.||+|...       +..||||++..... .....|.+|+.++ .++ +|||||+++
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~niv~~~   77 (338)
T cd05102           7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKIL-IHIGNHLNVVNLL   77 (338)
T ss_pred             hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHH-HHhccCcceeeEE
Confidence            34566678999999999999752       36799999965332 2245689999999 999 899999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=97.45  E-value=0.00011  Score=75.31  Aligned_cols=60  Identities=20%  Similarity=0.202  Sum_probs=48.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++...  |..||||.+....   ......|.+|+.++ .+++||||+.++
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il-~~l~~~~iv~~~   66 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRIL-EKVNSRFVVSLA   66 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHH-HhcCCCcEEEEE
Confidence            555678999999999999875  7899999986432   22345688999999 999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=97.43  E-value=0.0012  Score=71.93  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..++|.....||+|+||.||.+.-+  |..+|+|+|......   ...-...|=.+| .-..+|+||+|+
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL-~~~ds~~vVKLy  207 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDIL-AEVDSPWVVKLY  207 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHh-hhcCCCcEEEEE
Confidence            3456777779999999999999876  889999999764332   234567888999 889999999986

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=97.43  E-value=0.00022  Score=71.75  Aligned_cols=62  Identities=21%  Similarity=0.384  Sum_probs=49.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||.+.....   .....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLL-KQLNHPNVIKYL   68 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHH-HhCCCcceeeee
Confidence            35666778999999999999875  78999998854222   2235689999999 999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=97.42  E-value=0.00017  Score=72.43  Aligned_cols=60  Identities=30%  Similarity=0.498  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||.|+||.||++... +..||+|.+.... .....|.+|+.++ .+++|||+++++
T Consensus         7 ~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l-~~l~h~~i~~~~   67 (260)
T cd05067           7 TLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLM-KQLQHPRLVRLY   67 (260)
T ss_pred             HceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHH-HhcCCcCeeeEE
Confidence            3455678999999999999986 7899999986533 3457899999999 999999998763

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.42  E-value=0.00012  Score=69.54  Aligned_cols=60  Identities=33%  Similarity=0.436  Sum_probs=48.1

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++.-.+||+|.||+||||.-+  +..||+|..+-+  ...-...-.+|+-+| ..+.|.|||+|+
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicll-kelkhknivrl~   67 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLL-KELKHKNIVRLH   67 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHH-HHhhhcceeehh
Confidence            344458999999999999876  789999988543  223356678999999 999999999875

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=97.41  E-value=0.00016  Score=72.43  Aligned_cols=59  Identities=24%  Similarity=0.387  Sum_probs=48.4

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++.+. +..+|+|.+... ......|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l-~~l~h~~i~~~~   65 (256)
T cd05114           6 LTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVM-MKLSHPKLVQLY   65 (256)
T ss_pred             cEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHH-HHCCCCCceeEE
Confidence            455568999999999999987 568999988543 23356899999999 999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=97.40  E-value=0.0001  Score=73.89  Aligned_cols=62  Identities=34%  Similarity=0.613  Sum_probs=52.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|....+||.|+||.||+|... +..||+|.+..........|..|+.++ ..++||||++++
T Consensus         6 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   68 (261)
T cd05148           6 EEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQAL-KRLRHKHLISLF   68 (261)
T ss_pred             HHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHH-hcCCCcchhhee
Confidence            34555678999999999999987 689999999765554567899999999 999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=97.39  E-value=0.00013  Score=73.58  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=51.8

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .+++.|.....||.|+||.||+|...  +..||||.+... ......+.+|+.++ .++ +||||++++
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l-~~~~~h~~i~~~~   69 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINML-KKYSHHRNIATYY   69 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC-CccHHHHHHHHHHH-HHhcCCCCeeeEe
Confidence            45666777788999999999999886  689999998543 23456789999999 888 799999764

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=97.39  E-value=0.00019  Score=72.42  Aligned_cols=59  Identities=25%  Similarity=0.380  Sum_probs=47.3

Q ss_pred             CcCCccccccceeEEEEEEc-----CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||+|+||.||+|.+.     |..||||.+....  ......|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   67 (273)
T cd05074           2 TLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACM-KEFDHPNVIKLI   67 (273)
T ss_pred             cchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHH-hcCCCCCcceEE
Confidence            33568999999999999873     4789999996532  22356789999999 999999999864

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=97.39  E-value=0.0002  Score=75.44  Aligned_cols=62  Identities=21%  Similarity=0.309  Sum_probs=49.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||.|+||.||++...  +..||||.+....  ......|.+|+.++ .+++||||++++
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   80 (343)
T cd07878          15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLL-KHMKHENVIGLL   80 (343)
T ss_pred             hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHH-HhcCCCchhhhh
Confidence            44556678999999999999875  6899999986432  22345688999999 999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=97.38  E-value=0.00018  Score=75.70  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=50.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||.|+||.||++...  |..||+|.+..... .....|.+|+.++ .+++|||||+++
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   69 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVL-HECNSPYIVGFY   69 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHH-HHCCCCccccee
Confidence            45777789999999999999886  68899998865322 2245689999999 999999999874

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=97.38  E-value=0.00019  Score=72.09  Aligned_cols=60  Identities=25%  Similarity=0.459  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||+|+||.||+|... +..||+|.+.... .....|.+|+.++ .+++||||++++
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l-~~l~h~~i~~~~   67 (261)
T cd05072           7 SIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLM-KTLQHDKLVRLY   67 (261)
T ss_pred             HeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            4555678999999999999986 6789999986532 2357899999999 999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=97.38  E-value=0.00015  Score=76.16  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=55.0

Q ss_pred             HHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          522 EIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       522 el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++..++++|.....||.|+||.||++...  |..||||.+...  .......+.+|+.++ .+++|||||+++
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~   75 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLL-KHLRHENIISLS   75 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHH-HhcCCCCeeeEe
Confidence            44557788888899999999999999865  789999988542  222346788999999 999999999864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=97.38  E-value=0.00018  Score=75.54  Aligned_cols=63  Identities=22%  Similarity=0.304  Sum_probs=51.4

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +++|.....||+|+||.||+|...  |..||||.+.... ......+.+|+.++ .+++|||||+++
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   69 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKIL-RRFKHENIIGIL   69 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHH-HhCCCCCcCchh
Confidence            456777789999999999999875  7899999986432 22345688999999 999999999864

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=97.37  E-value=0.00027  Score=72.48  Aligned_cols=64  Identities=28%  Similarity=0.333  Sum_probs=52.2

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.++|.....||.|+||.||+|...  |..||||.+....  ......+.+|+.++ .+++||||++++
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~-~~l~h~~i~~~~   72 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKIL-RQLNHRNIVNLK   72 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHH-HhCCCCCeeeee
Confidence            4567778889999999999999986  7899999996532  22335678999999 999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=97.37  E-value=0.00028  Score=73.21  Aligned_cols=55  Identities=22%  Similarity=0.317  Sum_probs=44.9

Q ss_pred             CCccccccceeEEEEEEc----CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR----HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||+|+||.||+|...    +..||||.+....  ....+.+|+.++ .+++|||||+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l-~~l~h~niv~~~   64 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALL-RELKHPNVISLQ   64 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHH-HhcCCCCCccee
Confidence            458999999999999864    4789999985432  234688999999 999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=97.37  E-value=0.00017  Score=75.76  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||++...  |..||+|.+..... .....|.+|+.++ .+++|||||+++
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   69 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVL-HECNSPYIVGFY   69 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHH-HHCCCCCCCeEE
Confidence            45666778999999999999986  78899999865322 2245799999999 999999999875

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=97.36  E-value=0.00015  Score=76.00  Aligned_cols=61  Identities=21%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||||++....   ......|.+|+.++ .+++||||++++
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~h~~iv~~~   67 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDIL-TTTKSEWLVKLL   67 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHH-HhCCCCCCccEE
Confidence            4666678999999999999986  7899999995431   22346688999999 999999999874

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.36  E-value=0.00015  Score=77.63  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||.|+||.||++...  |..||||++....   ......|.+|+.++ .+++|||||+++
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il-~~l~hp~iv~~~   67 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVL-AESDSPWVVSLY   67 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            5666778999999999999875  7899999985421   22345688999999 999999999874

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=97.36  E-value=0.00015  Score=73.58  Aligned_cols=64  Identities=23%  Similarity=0.440  Sum_probs=51.1

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++++|...+.||+|+||.||+|...       +..||||++.... ......|.+|+.++ ..++||||++++
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l-~~l~~~~iv~~~   75 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM-KEFNCHHVVRLL   75 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            4567888889999999999999764       3579999985432 22345699999999 999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=97.36  E-value=0.00017  Score=73.82  Aligned_cols=60  Identities=20%  Similarity=0.202  Sum_probs=48.1

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||++...  |..||||.+....   ......|.+|+.++ .+++|||||+++
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   66 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQIL-EKVNSRFVVSLA   66 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHH-HhcCCCCEeeee
Confidence            455678999999999999875  7899999996532   12235688999999 999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=97.35  E-value=0.00021  Score=73.10  Aligned_cols=60  Identities=20%  Similarity=0.313  Sum_probs=47.3

Q ss_pred             CCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...       +..|++|.+..... .....|.+|+.++ ..++|||||+++
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   69 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLL-KQVNHPHVIKLY   69 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHH-hhCCCCCEeeEE
Confidence            455678999999999999863       25689998865332 2346799999999 999999999864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=97.35  E-value=0.0002  Score=75.66  Aligned_cols=61  Identities=21%  Similarity=0.365  Sum_probs=47.7

Q ss_pred             CCCcCCccccccceeEEEEEE-------cCeEEEEEEccCCCCC-ChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLL-------RHMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l-------~g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|.....||.|+||.||+|..       .+..||||++...... ....+.+|+.++ .++ +|||||+++
T Consensus         8 ~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~niv~~~   77 (343)
T cd05103           8 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL-IHIGHHLNVVNLL   77 (343)
T ss_pred             HhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHH-HhccCCccHhhhc
Confidence            455567899999999999973       2578999999654322 245688999999 999 789999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=97.34  E-value=0.00022  Score=73.03  Aligned_cols=61  Identities=20%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  ++.||+|.+..... .....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   65 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEIN-KSCKSPYIVKYY   65 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHH-HhCCCCCeeeee
Confidence            5666778999999999999985  68999999865322 3356799999999 999999999864

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=97.33  E-value=0.0002  Score=73.22  Aligned_cols=63  Identities=25%  Similarity=0.424  Sum_probs=50.7

Q ss_pred             hcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||++...       +..||+|.+.... ......|.+|+.++ .+++||||++++
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l-~~l~h~~iv~~~   74 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM-AEFDHPNIVKLL   74 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHH-HhcCCCchheEE
Confidence            456777889999999999999763       4789999986532 22346799999999 999999999764

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=97.33  E-value=0.00026  Score=72.15  Aligned_cols=60  Identities=13%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||.|+||.||+|...  +..||||.+.... ......|.+|+.++ .+++||||++++
T Consensus         3 ~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   65 (279)
T cd06619           3 IQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEIL-YKCDSPYIIGFY   65 (279)
T ss_pred             chheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            444568999999999999874  7899999985432 22345799999999 999999999865

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PTZ00036 glycogen synthase kinase; Provisional

Probab=97.33  E-value=0.00019  Score=78.85  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .+|....+||+|+||.||+|...  +..||||++....    ....+|+.++ .+++|||||++
T Consensus        66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il-~~l~h~niv~l  124 (440)
T PTZ00036         66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIM-KNLNHINIIFL  124 (440)
T ss_pred             CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHH-HhcCCCCCcce
Confidence            45777789999999999999885  7899999885422    2356899999 99999999986

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=97.33  E-value=0.00025  Score=72.02  Aligned_cols=61  Identities=25%  Similarity=0.260  Sum_probs=49.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|...++||.|+||.||+|...  |..||+|.+....  ......|.+|+.++ .+++||||++++
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   66 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRML-KQLRHENLVNLI   66 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHH-HhcCCcchhhHH
Confidence            4555678999999999999986  6899999985422  22346789999999 999999998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=97.32  E-value=0.00022  Score=72.68  Aligned_cols=60  Identities=37%  Similarity=0.402  Sum_probs=47.3

Q ss_pred             CCcCCccccccceeEEEEEEc------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|.+.      +..||+|.+.... ......|.+|+.++ .+++||||++++
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   73 (283)
T cd05090           7 VRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLM-AELHHPNIVCLL   73 (283)
T ss_pred             ceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHH-hhCCCCCeeeEE
Confidence            444568999999999999852      4789999996432 22346799999999 999999999764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=97.32  E-value=0.00018  Score=79.26  Aligned_cols=60  Identities=25%  Similarity=0.421  Sum_probs=49.4

Q ss_pred             CCcCCccccccceeEEEEEEc----C--eEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR----H--MQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~----g--~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....+||+|.||.||+|.+.    |  .-||||.-..+ .....+.|.+|..+| .+++|||||+||
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iM-rnfdHphIikLI  457 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIM-RNFDHPHIIKLI  457 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHH-HhCCCcchhhee
Confidence            345678999999999999884    3  56899988664 334467799999999 999999999986

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=97.32  E-value=0.00028  Score=70.80  Aligned_cols=59  Identities=27%  Similarity=0.533  Sum_probs=48.6

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++... +..||+|.+..... ....|.+|+.++ .+++|||+++++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l-~~l~~~~i~~~~   67 (260)
T cd05070           8 LQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIM-KKLRHDKLVQLY   67 (260)
T ss_pred             hhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHH-HhcCCCceEEEE
Confidence            344568999999999999877 67899999965433 356799999999 999999998764

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=97.32  E-value=0.00025  Score=74.80  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=52.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||.|+||.||+|...  |..||+|.+..........+.+|+.++ .+++||||++++
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l-~~l~h~~i~~~~   68 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKII-RRLDHDNIVKVY   68 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHH-HhcCCCcchhhH
Confidence            45666778999999999999875  789999998665555567799999999 999999999764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=97.32  E-value=0.00024  Score=73.69  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=49.7

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||+|.+..... .....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   65 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVL-HECNSPYIVGFY   65 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            5777789999999999999876  67899999865322 2235688999999 999999999874

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=97.32  E-value=0.00032  Score=70.22  Aligned_cols=61  Identities=28%  Similarity=0.502  Sum_probs=50.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||.|+||.||++... +..||||.+.... .....|.+|+.++ .+++||||++++
T Consensus         6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l-~~l~h~~i~~~~   67 (261)
T cd05034           6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIM-KKLRHDKLVQLY   67 (261)
T ss_pred             hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHH-hhCCCCCEeeee
Confidence            45666678999999999999887 5789999996543 3457899999999 999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.32  E-value=0.00027  Score=71.53  Aligned_cols=60  Identities=25%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             CCcCCccccccceeEEEEEEc------CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++.+.      +..||||.+...... ....|.+|+.++ ..+.||||++++
T Consensus         6 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l-~~l~~~~i~~~~   72 (284)
T cd05038           6 LKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEIL-RTLDHENIVKYK   72 (284)
T ss_pred             chhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHH-HhCCCCChheEE
Confidence            334468999999999999874      578999999654332 356899999999 999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=97.31  E-value=0.00026  Score=71.40  Aligned_cols=62  Identities=18%  Similarity=0.265  Sum_probs=49.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-----CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-----QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-----~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .||.....||+|+||.||++...  |..|++|.+.....     .....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   70 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLL-KNLQHERIVQYY   70 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHH-HHcCCCCeeeEE
Confidence            36777889999999999999875  78999998854321     1234688999999 999999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=97.31  E-value=0.00022  Score=75.71  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||++...  |..||||.+...  .......+.+|+.++ .+++||||++++
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   86 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLL-KCVNHKNIISLL   86 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHH-HhCCCCCEeeee
Confidence            456777789999999999999875  789999999542  223356788999999 999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=97.31  E-value=0.00022  Score=71.78  Aligned_cols=62  Identities=16%  Similarity=0.316  Sum_probs=49.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--C---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--L---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||.|+||.||.|...  |..||||.+....  .   .....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   70 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLL-KNLLHERIVQYY   70 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHH-HhcCCCCeeeEE
Confidence            35777789999999999999875  7899999885321  1   1235688999999 999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=97.31  E-value=0.00014  Score=73.99  Aligned_cols=71  Identities=24%  Similarity=0.409  Sum_probs=57.7

Q ss_pred             cCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       518 ~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +.+..+..++++|.....||+|+||.||++...  |..+|+|.+.... .....|.+|+.++ .++ .||||++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l-~~l~~h~~i~~~~   81 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNIL-KALSDHPNVVKFY   81 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHH-HHHhcCCCeeeee
Confidence            455667778888988899999999999999885  7899999986432 2235788999999 888 699999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=97.30  E-value=0.00028  Score=71.04  Aligned_cols=59  Identities=25%  Similarity=0.376  Sum_probs=47.1

Q ss_pred             CcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||+|+||.||+|.+.     +..||||.+.....  .....|.+|+..+ ..+.|||+++++
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   67 (273)
T cd05035           2 KLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACM-KDFDHPNVMKLI   67 (273)
T ss_pred             ccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            34568999999999999874     26799999865322  2346799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=97.30  E-value=0.00034  Score=70.97  Aligned_cols=61  Identities=34%  Similarity=0.457  Sum_probs=50.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||.|+||.||+|...  |..||||.+..... .....+.+|+.++ .+++||||++++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   64 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLM-KELKHENIVRLH   64 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHH-HhhcCCCEeeee
Confidence            4666779999999999999985  78999999865432 2346688999999 999999999864

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=97.30  E-value=0.00014  Score=73.87  Aligned_cols=61  Identities=23%  Similarity=0.380  Sum_probs=50.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  +..||+|.+..........|.+|+.++ .+++||||++++
T Consensus         6 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (280)
T cd06611           6 IWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDIL-SECKHPNIVGLY   68 (280)
T ss_pred             HHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHH-HhCCCCceeEEE
Confidence            4555567999999999999986  789999998655444456799999999 999999999874

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=97.30  E-value=0.00036  Score=69.97  Aligned_cols=62  Identities=23%  Similarity=0.354  Sum_probs=51.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||+|.+...   .......|.+|+.++ .++.|+|+++++
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l-~~~~~~~i~~~~   68 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLL-KQLDHPNVIKYL   68 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHH-HhCCCCCeeeee
Confidence            46777789999999999999986  789999988542   222356799999999 999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=97.30  E-value=0.00033  Score=72.18  Aligned_cols=61  Identities=28%  Similarity=0.372  Sum_probs=48.7

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||.|+||.||+|...  +..||+|.+.... ......+.+|+.++ .+++||||++++
T Consensus         7 ~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~nI~~~~   70 (301)
T cd07873           7 TYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLL-KDLKHANIVTLH   70 (301)
T ss_pred             ceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHH-HhcCCCCcceEE
Confidence            3455568999999999999876  6899999985432 22345688999999 999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=97.29  E-value=0.00029  Score=71.04  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=46.3

Q ss_pred             cCCccccccceeEEEEEEc--C--eEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLR--H--MQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~--g--~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ....||+|+||.||+|.+.  +  ..||+|.+....  ......|..|+.++ ..++||||++++
T Consensus         3 i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   66 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCM-KEFDHPNVMRLI   66 (272)
T ss_pred             cccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            3468999999999999986  3  368999885432  23356789999999 999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=97.29  E-value=0.00028  Score=72.16  Aligned_cols=64  Identities=28%  Similarity=0.363  Sum_probs=51.3

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++.+|.....||.|+||.||+|...  |..||||.+..... .....+.+|+.++ ..++|+||+++.
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l-~~l~h~ni~~~~   69 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLL-KGLKHANIVLLH   69 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHH-HhcCCCCEeEEE
Confidence            4566777789999999999999875  78999999854332 2234678999999 999999998763

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.28  E-value=0.00025  Score=78.18  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             HHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          523 IEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       523 l~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ....+.+|.....||.|.|+.|..+...  |+.||||.++....  .....+.+|+.+| ..++|||||+|+
T Consensus        51 ~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~im-k~l~HPnIvkl~  121 (596)
T KOG0586|consen   51 DSNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIM-KSLNHPNIVKLF  121 (596)
T ss_pred             ccccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHH-HhcCCcceeeee
Confidence            3456677888889999999999999886  89999999976432  2234589999999 999999999885

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=97.28  E-value=0.00022  Score=72.26  Aligned_cols=60  Identities=23%  Similarity=0.398  Sum_probs=48.4

Q ss_pred             CCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||+|+||.||+|...       +..||||.+...... ....|.+|+.++ .++.|||+++++
T Consensus         7 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   74 (280)
T cd05049           7 IVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELL-TNFQHENIVKFY   74 (280)
T ss_pred             hhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHH-HhcCCCCchhee
Confidence            445568999999999999864       368999999654333 356899999999 999999999764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=97.27  E-value=0.00033  Score=72.47  Aligned_cols=55  Identities=22%  Similarity=0.319  Sum_probs=44.8

Q ss_pred             CCccccccceeEEEEEEc----CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR----HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||+|+||.||+|...    +..||+|.+....  ....+.+|+.++ .+++|||||+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l-~~l~h~niv~~~   64 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALL-RELKHPNVIALQ   64 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHH-HhCCCCCeeeEE
Confidence            358999999999999874    3689999986532  234688999999 999999999763

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=97.27  E-value=0.0003  Score=71.53  Aligned_cols=60  Identities=27%  Similarity=0.399  Sum_probs=47.9

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +..||||.+.... ......|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   68 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVL-SQCDSPYVTKYY   68 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHH-HhcCCCCEeEEE
Confidence            445568999999999999875  7899999985432 22346789999999 999999999764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=97.27  E-value=0.00027  Score=75.58  Aligned_cols=61  Identities=16%  Similarity=0.113  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||++....   ......|.+|+.++ .++.||||++++
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il-~~l~h~~iv~~~   67 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDIL-AEADNEWVVKLY   67 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHH-HhCCCCCcceEE
Confidence            4666778999999999999875  7899999985421   22345688999999 999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PHA03212 serine/threonine kinase US3; Provisional

Probab=97.26  E-value=0.00027  Score=76.44  Aligned_cols=55  Identities=16%  Similarity=0.090  Sum_probs=46.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  +..||||...      ...+.+|+.++ .+++|||||+++
T Consensus        93 ~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il-~~l~HpnIv~~~  149 (391)
T PHA03212         93 GFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHIL-RAINHPSIIQLK  149 (391)
T ss_pred             CcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHH-HhCCCCCCCCEe
Confidence            3555678999999999999875  7899999753      23578999999 999999999874

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=97.26  E-value=0.00035  Score=70.50  Aligned_cols=59  Identities=31%  Similarity=0.547  Sum_probs=48.3

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|... +..||+|++.... .....|.+|+.++ .+++||||++++
T Consensus         8 ~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l-~~l~~~~i~~~~   67 (262)
T cd05071           8 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVM-KKLRHEKLVQLY   67 (262)
T ss_pred             eeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHH-HhCCCCCcceEE
Confidence            555668999999999999886 4579999996532 2356799999999 999999999764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=97.26  E-value=0.00043  Score=69.28  Aligned_cols=62  Identities=16%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-----CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-----QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-----~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|...+.||.|+||.||++...  |..||+|.+.....     .....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   70 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLL-KNLQHERIVQYY   70 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHH-HhCCCCCeeeeE
Confidence            46888899999999999999874  78999999854321     1235689999999 999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=97.25  E-value=0.00038  Score=71.76  Aligned_cols=61  Identities=21%  Similarity=0.252  Sum_probs=50.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||+|.+..........|.+|+.++ ..++||||++++
T Consensus        20 ~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   82 (297)
T cd06656          20 KYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVM-RENKNPNIVNYL   82 (297)
T ss_pred             hceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            3555568999999999999864  789999999655444556789999999 999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=97.25  E-value=0.00021  Score=76.68  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|....+||+|+||.||++...  +..||||.+....   ......|.+|+.++ .++.|||||+++
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il-~~~~h~~iv~~~   67 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDIL-AEADNEWVVRLY   67 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHH-HhCCCCcCCeEE
Confidence            4666789999999999999875  6899999986422   12245688999999 999999999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.25  E-value=0.0002  Score=78.55  Aligned_cols=59  Identities=25%  Similarity=0.289  Sum_probs=48.5

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCcccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      |.....||.|+||.||.+.-.  ...||||++.....+.   +.+.+.||..| .+++|||.+..
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL-~~l~HPntieY   91 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFL-RQLRHPNTIEY   91 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHH-HhccCCCcccc
Confidence            555677999999999998765  5789999997765554   56678999999 99999999853

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=97.23  E-value=0.00029  Score=70.59  Aligned_cols=61  Identities=20%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  +..||+|.+....   ......|.+|+.++ .+++||||++++
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   66 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRIL-QELNHPFLVNLW   66 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHH-HhCCCCChHHHH
Confidence            3555678999999999999886  7899999996432   23457899999999 999999999763

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=97.23  E-value=0.00037  Score=70.01  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC------ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ------GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~------~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||+|.+......      ....|.+|+.++ .+++|||||+++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   69 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLM-ARLNHPHIIRML   69 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHH-HHcCCCceehhh
Confidence            4666788999999999999864  789999998643211      245789999999 999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=97.23  E-value=0.00034  Score=70.79  Aligned_cols=62  Identities=23%  Similarity=0.396  Sum_probs=49.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||.|+||.||+|...       ...|++|.+...... ....|.+|+.++ .+++||||++++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   74 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMF-RKLSHKNVVRLL   74 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHH-HhcCCcceeeeE
Confidence            35666678999999999999864       257999998654332 346799999999 999999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=97.23  E-value=0.00034  Score=69.63  Aligned_cols=61  Identities=18%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|...+.||+|+||.||++...  |..|++|.+...  .......|.+|+.++ .+++||||++++
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   65 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVL-AKLDSSYIIRYY   65 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHH-HhcCCCCeehhe
Confidence            3556678999999999999885  789999998542  233457799999999 999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=97.23  E-value=0.00029  Score=74.16  Aligned_cols=61  Identities=16%  Similarity=0.187  Sum_probs=50.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||||++....   ......|..|+.++ ..++||||++++
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   67 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDIL-ADADSPWIVKLY   67 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHH-HhcCCCCccchh
Confidence            4666778999999999999987  8899999996421   23356789999999 999999999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=97.22  E-value=0.00035  Score=70.92  Aligned_cols=62  Identities=23%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...      +..|++|.+.... ......|.+|+.++ .++.||||++++
T Consensus         6 ~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l-~~l~h~ni~~~~   74 (280)
T cd05043           6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLL-YGLSHQNILPIL   74 (280)
T ss_pred             hheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            45666778999999999999875      3789999986432 22356689999999 999999999864

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=97.22  E-value=0.00028  Score=71.03  Aligned_cols=63  Identities=25%  Similarity=0.468  Sum_probs=50.4

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--C---eEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--H---MQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g---~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +++|...+.||+|+||.||+|...  +   ..||+|.+.... ......|.+|+.++ .+++|||+++++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   72 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIM-GQFSHHNIIRLE   72 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHH-hcCCCCCeeEEE
Confidence            346777889999999999999885  3   379999986542 22346799999999 999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=97.22  E-value=0.0003  Score=75.46  Aligned_cols=62  Identities=23%  Similarity=0.387  Sum_probs=48.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|...+.||+|+||.||++...       +..||||++..... .....|.+|+.++ ..+ +|||||+++
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il-~~l~~h~nIv~~~  108 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKIL-SHLGQHKNIVNLL  108 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHH-HhhccCCceeeEe
Confidence            35666789999999999998753       25799999965332 2245688999999 988 899999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=97.22  E-value=0.00023  Score=71.65  Aligned_cols=60  Identities=30%  Similarity=0.347  Sum_probs=48.8

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  +..||+|.+..........|.+|+.++ ..++||||++++
T Consensus        11 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~-~~l~h~~ii~~~   72 (267)
T cd06645          11 FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMM-KDCKHSNIVAYF   72 (267)
T ss_pred             HHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            344457999999999999875  789999998655444456788999999 999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.21  E-value=0.00038  Score=82.10  Aligned_cols=61  Identities=23%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|...++||+|+||.||+|...  |..||||++......   ....|.+|+.++ .+++|||||+++
T Consensus         3 rYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~IL-s~L~HPNIVkl~   68 (932)
T PRK13184          3 RYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIA-ADLIHPGIVPVY   68 (932)
T ss_pred             CeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHH-HhCCCcCcCeEE
Confidence            4666779999999999999875  789999999653222   245799999999 999999999874

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=97.21  E-value=0.0004  Score=70.97  Aligned_cols=62  Identities=26%  Similarity=0.377  Sum_probs=49.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||.+...... ....+.+|+.++ .+++||||++++
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   69 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLL-KDLKHANIVTLH   69 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHH-hhCCCcceeeEE
Confidence            34666678999999999999875  789999998653322 234578999999 999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=97.21  E-value=0.00033  Score=70.54  Aligned_cols=59  Identities=32%  Similarity=0.514  Sum_probs=49.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||+|...  +..||+|.+... ......|.+|+.++ .+++||||++++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (263)
T cd05052           8 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVM-KEIKHPNLVQLL   68 (263)
T ss_pred             eEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHH-HhCCCCChhheE
Confidence            555678999999999999986  789999998643 33456799999999 999999999865

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=97.21  E-value=0.00036  Score=72.06  Aligned_cols=56  Identities=30%  Similarity=0.338  Sum_probs=47.4

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|+||.||++...  +..||||.+..........|.+|+.++ ..++||||++++
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l-~~l~hp~i~~~~   84 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIM-RDYQHQNVVEMY   84 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHH-HhCCCCchhhhh
Confidence            47999999999999874  789999999655445566789999999 999999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=97.20  E-value=0.00037  Score=70.07  Aligned_cols=59  Identities=29%  Similarity=0.398  Sum_probs=47.8

Q ss_pred             CCcCCccccccceeEEEEEEcC-eEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g-~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||.|...+ ..||||.+.... .....|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l-~~l~h~~i~~~~   65 (256)
T cd05113           6 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVM-MKLSHEKLVQLY   65 (256)
T ss_pred             eEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc-ccHHHHHHHHHHH-hcCCCCCeeeEE
Confidence            3344579999999999998874 579999986432 3356799999999 999999999874

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=97.20  E-value=0.00033  Score=71.74  Aligned_cols=60  Identities=22%  Similarity=0.252  Sum_probs=47.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||++...  |..||+|.+.....   .....|.+|+.++ .+++|+|++.++
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il-~~l~~~~i~~~~   66 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQIL-EKVNSQFVVNLA   66 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHH-HHcCCcCceeEE
Confidence            444568999999999999886  78999999865321   2234578999999 999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=97.20  E-value=0.00043  Score=73.61  Aligned_cols=63  Identities=19%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||++...  +..||||++...  .......+.+|+.++ ..++||||+.++
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~ii~~~   89 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLM-KCVNHKNIIGLL   89 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHH-HhcCCCCccccc
Confidence            456777889999999999999875  789999999643  223346788999999 999999999764

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=97.20  E-value=0.00047  Score=70.65  Aligned_cols=60  Identities=23%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-----ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-----GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-----~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..||||.+......     ....+..|+.++ .+++||||++++
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   68 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLL-QELKHPNIIGLL   68 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHH-hhcCCCCChhhh
Confidence            455668999999999999975  789999999654322     234567899999 999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=97.20  E-value=0.00049  Score=68.36  Aligned_cols=58  Identities=33%  Similarity=0.519  Sum_probs=48.5

Q ss_pred             cCCccccccceeEEEEEEcC------eEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLRH------MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~g------~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ....||.|+||.||++...+      ..||+|++...... ....|..|+.++ ..++||||++++
T Consensus         3 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   67 (258)
T smart00219        3 LGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIM-RKLDHPNIVKLL   67 (258)
T ss_pred             ccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHH-HhcCCCchheEE
Confidence            34689999999999999863      78999999665433 467899999999 999999999875

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=97.20  E-value=0.00033  Score=74.20  Aligned_cols=64  Identities=19%  Similarity=0.196  Sum_probs=51.4

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..++|.....||+|+||.||++...  +..||||.+....  ......+.+|+.++ ..++||||++++
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   82 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM-KCVNHKNIISLL   82 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHH-HHhCCCchhcee
Confidence            3456777789999999999999765  7899999996432  22346788999999 999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.19  E-value=0.00016  Score=77.69  Aligned_cols=56  Identities=27%  Similarity=0.342  Sum_probs=45.5

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHH--HHHHHHHHcCCC-CCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEF--QQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F--~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ..+||.|.||.||+|.-.  |..||||++... .+.++++  .+||..| .+|+ |||||+|.
T Consensus        15 i~klGDGTfGsV~la~~~~~~~~VAIK~MK~K-f~s~ee~~nLREvksL-~kln~hpniikL~   75 (538)
T KOG0661|consen   15 IRKLGDGTFGSVYLAKSKETGELVAIKKMKKK-FYSWEECMNLREVKSL-RKLNPHPNIIKLK   75 (538)
T ss_pred             HHHhcCCcceeEEEeeecCCCceeeHHHHHhh-hccHHHHHHHHHHHHH-HhcCCCCcchhhH
Confidence            357999999999999875  889999998543 2335555  6899999 9999 99999873

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=97.19  E-value=0.00055  Score=69.53  Aligned_cols=60  Identities=33%  Similarity=0.392  Sum_probs=48.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..||||.+....  ......+.+|+.++ .+++||||++++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   65 (285)
T cd07861           2 YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLL-KELQHPNIVCLQ   65 (285)
T ss_pred             ceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHH-HhcCCCCEeeeE
Confidence            455568999999999999985  7899999985432  22246788999999 999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=97.19  E-value=0.00058  Score=69.35  Aligned_cols=59  Identities=31%  Similarity=0.371  Sum_probs=47.8

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||.|++|.||+|...  |..||||++....  ......|.+|+.++ .+++|||+++++
T Consensus         2 ~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~iv~~~   64 (283)
T cd07835           2 QKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLL-KELNHPNIVRLL   64 (283)
T ss_pred             chheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHH-HhcCCCCccCHh
Confidence            34568999999999999875  8999999986532  22245789999999 999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=97.19  E-value=0.00045  Score=69.90  Aligned_cols=61  Identities=25%  Similarity=0.326  Sum_probs=49.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||+|.+.... ......|.+|+.++ ..++|||+++++
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   65 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFL-SQCRSPYITKYY   65 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHH-HHcCCCCeeeee
Confidence            3455568999999999999986  7899999986432 33356789999999 999999998764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=97.19  E-value=0.00019  Score=76.84  Aligned_cols=63  Identities=19%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||++...  |..||||.+...   .......|.+|+.++ ..++||||++++
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il-~~~~h~~iv~~~  109 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIM-AHANSEWIVQLH  109 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHH-HhCCCCCcceEE
Confidence            345666778999999999999886  789999998542   222345588999999 999999999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=97.19  E-value=0.00044  Score=68.81  Aligned_cols=60  Identities=25%  Similarity=0.392  Sum_probs=48.5

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-----CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-----LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-----~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +..|++|.+....     ......|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   68 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALL-SKLQHPNIVQYL   68 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHH-HhcCCCCchhee
Confidence            444568999999999999985  7899999985432     12346789999999 999999999865

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=97.18  E-value=0.00029  Score=70.43  Aligned_cols=58  Identities=26%  Similarity=0.402  Sum_probs=48.9

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...+..||+|.+....  ....|.+|+.++ .+++|||+++++
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~--~~~~~~~e~~~l-~~~~~~~i~~~~   65 (254)
T cd05083           8 LTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDV--TAQAFLEETAVM-TKLHHKNLVRLL   65 (254)
T ss_pred             ceeeeeeccCCCCceEecccCCCceEEEeecCcc--hHHHHHHHHHHH-HhCCCCCcCeEE
Confidence            4556789999999999999889999999986532  246799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=97.18  E-value=0.00043  Score=70.53  Aligned_cols=61  Identities=25%  Similarity=0.444  Sum_probs=48.9

Q ss_pred             CCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...       +..||+|.+..........|.+|+.++ .++.||||++++
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   73 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL-TVLQHQHIVRFY   73 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHH-hcCCCCCCceEE
Confidence            3455678999999999999642       468999998655444467899999999 999999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=97.18  E-value=0.00059  Score=69.24  Aligned_cols=61  Identities=30%  Similarity=0.329  Sum_probs=49.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||+|.+....  ......|.+|+.++ .+++||||++++
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   66 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRML-KQLKHPNLVNLI   66 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHH-HhCCCCCEeeee
Confidence            4555678999999999999986  7899999985432  22345689999999 999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=97.18  E-value=0.00047  Score=68.92  Aligned_cols=62  Identities=29%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||++...  +..+++|.+..........+.+|+.++ .+++||||++++
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   66 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISML-KECRHPNIVAYF   66 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHH-HhCCCCChhceE
Confidence            35666678999999999999885  678999999665444567899999999 999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=97.17  E-value=0.00046  Score=70.95  Aligned_cols=63  Identities=25%  Similarity=0.309  Sum_probs=50.9

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +++|....+||.|+||.||+|...  +..||||.+.....  .....+.+|+.++ .+++||||++++
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   73 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKIL-KKLKHPNVVPLI   73 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHH-HhcCCCCccchh
Confidence            456777789999999999999986  78999999854322  2234678999999 999999999864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=97.17  E-value=0.00041  Score=69.12  Aligned_cols=61  Identities=26%  Similarity=0.382  Sum_probs=49.7

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|...+.||.|+||.||+|...  |..||+|.+...  .......|.+|+.++ ..++||||++++
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l-~~~~h~~i~~~~   65 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILL-AKMKHPNIVTFF   65 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHH-HhCCCCChhhhh
Confidence            3556678999999999999986  789999998543  223456789999999 999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=97.17  E-value=0.00033  Score=71.36  Aligned_cols=60  Identities=23%  Similarity=0.321  Sum_probs=48.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  |..||+|.+.... ......|.+|+.++ .+++||||++++
T Consensus         3 ~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   65 (286)
T cd06622           3 IEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDIL-HKAVSPYIVDFY   65 (286)
T ss_pred             hhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHH-HhcCCCcHHhhh
Confidence            444568999999999999986  7899999885432 22246799999999 999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=97.17  E-value=0.00027  Score=75.82  Aligned_cols=62  Identities=21%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  +..||+|.+...   .......|.+|+.++ ..++|||||+++
T Consensus        43 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~-~~~~hp~iv~~~  109 (370)
T cd05621          43 EDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIM-AFANSPWVVQLF  109 (370)
T ss_pred             HHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            45666678999999999999886  689999998542   122345688999999 999999999875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=97.17  E-value=0.0003  Score=74.44  Aligned_cols=61  Identities=20%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--C-eEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--H-MQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g-~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  + ..||+|.+...   .......|.+|+.++ ..++|||||+++
T Consensus        31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~Iv~~~   97 (340)
T PTZ00426         31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKIL-NYINHPFCVNLY   97 (340)
T ss_pred             hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHH-HhCCCCCCcceE
Confidence            4566678999999999999875  2 58999998532   223346788999999 999999999874

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=97.16  E-value=0.00032  Score=70.82  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             CCcCCccccccceeEEEEEEcC-----eEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRH-----MQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g-----~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|....     ..|+||...... ......|.+|+.++ .++.||||++++
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   73 (270)
T cd05056           8 ITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIM-RQFDHPHIVKLI   73 (270)
T ss_pred             ceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHH-HhCCCCchhcee
Confidence            5556789999999999998742     468999886543 23356799999999 999999999874

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=97.16  E-value=0.00037  Score=71.13  Aligned_cols=59  Identities=17%  Similarity=0.107  Sum_probs=48.1

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||+|+||.||++...  |..||+|.+.... ......|.+|+.++ ..++||||++++
T Consensus         8 ~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   69 (284)
T cd06620           8 ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIM-HECRSPYIVSFY   69 (284)
T ss_pred             HHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHH-HHcCCCCcceEe
Confidence            33457999999999999886  7899999885432 23356799999999 999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=97.16  E-value=0.00035  Score=71.03  Aligned_cols=64  Identities=31%  Similarity=0.449  Sum_probs=51.1

Q ss_pred             hhcCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++++|...+.||.|+||.||+|.+.+       ..|++|.+..... .....|.+|+.++ .+++||||++++
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   75 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIM-SKFNHQNIVRLI   75 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            34567777899999999999998853       6789998864332 2345699999999 999999999875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=97.16  E-value=0.00042  Score=69.63  Aligned_cols=61  Identities=23%  Similarity=0.421  Sum_probs=48.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..|+||.+.....   .....|.+|+.++ .++.||||++++
T Consensus         3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   68 (267)
T cd08229           3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLL-KQLNHPNVIKYY   68 (267)
T ss_pred             hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHH-HHccCCchhhhh
Confidence            4555678999999999999864  78999998854222   2245789999999 999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=97.16  E-value=0.0005  Score=71.09  Aligned_cols=63  Identities=25%  Similarity=0.302  Sum_probs=50.3

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|...+.||.|+||.||+|...  |..||+|.+.....  .....+.+|+.++ .+++||||++++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   72 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLL-LNLRHPNIVELK   72 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHH-HhCCCCCCcceE
Confidence            356777889999999999999985  78999999854322  1233567899999 999999999764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=97.16  E-value=0.00052  Score=70.63  Aligned_cols=62  Identities=23%  Similarity=0.279  Sum_probs=50.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||.|+||.||+|...  +..|++|.+..........|.+|+.++ .+++|||+++++
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l-~~l~hp~i~~~~   82 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVM-RENKHPNIVNYL   82 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHH-hhcCCCCeeehh
Confidence            34555678999999999999864  688999998654444456789999999 999999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=97.16  E-value=0.0005  Score=68.80  Aligned_cols=59  Identities=25%  Similarity=0.401  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...|..||+|.+....  ....|.+|+.++ .+++|||+++++
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~--~~~~~~~e~~~l-~~l~~~~i~~~~   65 (256)
T cd05082           7 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVM-TQLRHSNLVQLL   65 (256)
T ss_pred             hCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCCc--hHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            35556789999999999999999999999985432  346799999999 999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=97.15  E-value=0.00039  Score=71.24  Aligned_cols=60  Identities=18%  Similarity=0.331  Sum_probs=49.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +..|++|.+..........|.+|+.++ ..+.|||+++++
T Consensus        14 y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   75 (292)
T cd06644          14 WEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEIL-ATCNHPYIVKLL   75 (292)
T ss_pred             hhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHH-HhCCCCcEeeeE
Confidence            333457999999999999886  689999999765544567799999999 999999999864

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=97.15  E-value=0.00049  Score=72.74  Aligned_cols=63  Identities=22%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||++...  |..||||.+....  ......+.+|+.++ .+++||||++++
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   80 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLL-KHMKHENVIGLL   80 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHH-HhcCCCCcccee
Confidence            455666778999999999999875  7899999985422  22235688999999 999999999763

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=97.15  E-value=0.0003  Score=71.94  Aligned_cols=72  Identities=25%  Similarity=0.386  Sum_probs=58.8

Q ss_pred             ccCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          517 DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       517 ~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      -+++.++..++++|.....||.|+||.||++...  |..+|+|.+.... .....+.+|+.++ .++ .|||+++++
T Consensus        11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l-~~l~~h~ni~~~~   85 (291)
T cd06639          11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNIL-QSLPNHPNVVKFY   85 (291)
T ss_pred             hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHH-HHhcCCCCeEEEE
Confidence            3566777888999999999999999999999885  7899999985432 2245678899999 888 899999864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=97.14  E-value=0.00051  Score=68.41  Aligned_cols=60  Identities=30%  Similarity=0.398  Sum_probs=50.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  +..|++|.+.....  ...|.+|+.++ .+++||||++++
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~-~~l~~~~i~~~~   64 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISIL-KQCDSPYIVKYY   64 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHH-HhCCCCcEeeee
Confidence            45667778999999999999986  68999999865432  67899999999 999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=97.14  E-value=0.00056  Score=68.26  Aligned_cols=59  Identities=24%  Similarity=0.380  Sum_probs=48.5

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++... +..+|+|.+... ......|.+|+.++ .++.|||+++++
T Consensus         6 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (256)
T cd05112           6 LTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG-AMSEEDFIEEAQVM-MKLSHPKLVQLY   65 (256)
T ss_pred             eEEEeeecCcccceEEEEEEeCCCeEEEEECCCC-CCCHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            444568999999999999886 788999998543 23356799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=97.14  E-value=0.00034  Score=71.19  Aligned_cols=57  Identities=33%  Similarity=0.394  Sum_probs=45.5

Q ss_pred             CCccccccceeEEEEEEc-------CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||.|+||.||+|...       +..||||++...... ....|..|+.++ .+++|||||+++
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~-~~l~h~~iv~~~   74 (283)
T cd05091          10 MEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMR-SRLQHPNIVCLL   74 (283)
T ss_pred             HHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHH-hcCCCCCcCeEE
Confidence            357899999999999874       367999999654322 235689999999 999999999764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=97.14  E-value=0.00049  Score=69.30  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=49.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-----CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-----LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-----~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|...+.||.|+||.||+|...  |..||+|.+....     ......|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l-~~l~h~~i~~~~   70 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLL-KNLRHDRIVQYY   70 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHH-HHcCCCCcceEE
Confidence            35777789999999999999875  7899999874321     12245789999999 999999999764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=97.13  E-value=0.00053  Score=71.70  Aligned_cols=60  Identities=20%  Similarity=0.364  Sum_probs=49.0

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.....||+|.||.||.+...  |...|||..........+.+.+|+.+| .+++|||||+.+
T Consensus        19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL-~~l~~p~IV~~~   80 (313)
T KOG0198|consen   19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRIL-SRLNHPNIVQYY   80 (313)
T ss_pred             hhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHH-HhCCCCCEEeeC
Confidence            444578999999999999986  789999998554222256689999999 999999999864

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=97.13  E-value=0.00059  Score=70.33  Aligned_cols=60  Identities=20%  Similarity=0.252  Sum_probs=49.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..||+|.+..........|.+|+.++ ..++||||++++
T Consensus        22 y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l-~~~~h~~v~~~~   83 (296)
T cd06654          22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVM-RENKNPNIVNYL   83 (296)
T ss_pred             eeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            344457999999999999864  789999999765555567799999999 999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=97.13  E-value=0.00068  Score=69.93  Aligned_cols=60  Identities=23%  Similarity=0.286  Sum_probs=48.3

Q ss_pred             CCcCCccccccceeEEEEEEc----CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR----HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||.|+||.||+|...    |..||||.+....   ......+.+|+.++ .+++||||++++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALL-RELKHENVVSLV   68 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHH-HhcCCCCccceE
Confidence            445568999999999999983    5899999996632   23346788999999 999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=97.13  E-value=0.00063  Score=68.08  Aligned_cols=61  Identities=26%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|...+.||.|+||.||+|...  +..|++|++.... ......|.+|+.++ ..++|||+++++
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAM-SQCNHPNVVKYY   65 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHH-HhcCCCCEEEEE
Confidence            5666788999999999999875  6889999986432 23457799999999 999999998764

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=97.13  E-value=0.00066  Score=68.89  Aligned_cols=60  Identities=25%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..|+||.+....  ......|.+|+.++ .+++||||++++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   65 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKAL-QACQHPYVVKLL   65 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHH-HhCCCCCCccee
Confidence            344568999999999999985  7899999996543  22346799999999 999999999864

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=97.13  E-value=0.00045  Score=70.69  Aligned_cols=62  Identities=24%  Similarity=0.414  Sum_probs=49.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|...+.||+|+||.||++...       +..+|+|.+..........|.+|+.++ .+++||||++++
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   73 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELL-TNLQHEHIVKFY   73 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            35666788999999999999752       356899998654444456799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=97.12  E-value=0.00069  Score=70.07  Aligned_cols=60  Identities=25%  Similarity=0.263  Sum_probs=48.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||+|...  |..||+|.+......   ....|.+|+.++ ..++||||++++
T Consensus        17 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l-~~l~h~niv~~~   81 (307)
T cd06607          17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFL-QQLRHPNTIEYK   81 (307)
T ss_pred             hhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            555678999999999999875  789999998543222   235688999999 999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=97.12  E-value=0.00042  Score=71.22  Aligned_cols=61  Identities=23%  Similarity=0.341  Sum_probs=47.3

Q ss_pred             CCCcCCccccccceeEEEEEEcC----------------eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRH----------------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g----------------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||.+...+                ..||||.++.... .....|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l-~~l~h~~i~~~~   83 (295)
T cd05097           6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIM-SRLKNPNIIRLL   83 (295)
T ss_pred             hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHH-HhCCCCCcCeEE
Confidence            35555689999999999886532                2589999976432 2345799999999 999999999874

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=97.12  E-value=0.00058  Score=69.93  Aligned_cols=62  Identities=29%  Similarity=0.392  Sum_probs=50.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||.+.....  .....|.+|+.++ .+++||||++++
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   67 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLL-KEMQHGNIVRLQ   67 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHH-HhccCCCEeeEE
Confidence            35666778999999999999875  78999999854322  2346789999999 999999999864

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=97.12  E-value=0.0005  Score=70.93  Aligned_cols=60  Identities=20%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..|+||.+..........|.+|+.++ ..++|||+++++
T Consensus        21 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   82 (296)
T cd06655          21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVM-KELKNPNIVNFL   82 (296)
T ss_pred             EEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHH-HhcCCCceeeee
Confidence            445568999999999999864  789999999655444567789999999 999999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=97.12  E-value=0.0003  Score=71.41  Aligned_cols=57  Identities=26%  Similarity=0.390  Sum_probs=46.4

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||.|+||.||+|...  |..||+|.+.... ......|.+|+.++ .+++||||++++
T Consensus         9 ~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (277)
T cd06642           9 LERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVL-SQCDSPYITRYY   68 (277)
T ss_pred             HHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHH-HcCCCCccHhhh
Confidence            346899999999999875  6899999986432 23345789999999 999999999864

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.12  E-value=0.00044  Score=73.67  Aligned_cols=59  Identities=25%  Similarity=0.365  Sum_probs=48.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      |.....||+|.||.||||...  +..||||+++-.. ....++.++|+.+| ++++|+||...
T Consensus        15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~L-s~~~~~~it~y   76 (467)
T KOG0201|consen   15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVL-SQCDSPNITEY   76 (467)
T ss_pred             cccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHH-HhcCcchHHhh
Confidence            334458999999999999987  7899999997643 34467889999999 99999999654

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=97.12  E-value=0.00079  Score=67.65  Aligned_cols=60  Identities=25%  Similarity=0.452  Sum_probs=47.3

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCC------ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQ------GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~------~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|... |..||||.+......      ....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   68 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLL-KSLKHVNIVQYL   68 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHH-HhcCCCCEeeEe
Confidence            344568999999999999875 789999988543211      135688999999 999999999764

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=97.12  E-value=0.00054  Score=68.26  Aligned_cols=60  Identities=18%  Similarity=0.257  Sum_probs=48.1

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||++...  |..||+|.+....  ......|..|+.++ .+++||||++++
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNIL-RELKHPNIVRYY   65 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHH-HhcCCCccceee
Confidence            445578999999999999875  7899999986432  22345688999999 999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=97.12  E-value=0.00067  Score=68.67  Aligned_cols=58  Identities=28%  Similarity=0.308  Sum_probs=47.6

Q ss_pred             cCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ....||.|+||.||+|...  |..||+|.+....  ......|.+|+.++ .+++|||+++++
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   64 (287)
T cd07840           3 KIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLL-QKLRHPNIVRLK   64 (287)
T ss_pred             eeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHH-HhccCCCeeehe
Confidence            3457999999999999886  6899999997643  22345688999999 999999999764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=97.12  E-value=0.00065  Score=67.86  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=51.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..|+||++..... .....|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTL-RSCESPYVVKCY   65 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHH-HhcCCCCeeeEE
Confidence            5666789999999999999886  78999999866443 3457899999999 999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=97.11  E-value=0.00053  Score=69.79  Aligned_cols=56  Identities=21%  Similarity=0.384  Sum_probs=47.1

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|+||.||+|...  +..+++|.+..........|.+|+.++ ..++||||++++
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l-~~l~h~~ii~~~   68 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDIL-ASCDHPNIVKLL   68 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHH-HHCCCCCeeeEE
Confidence            47999999999999986  678899998654444456799999999 999999999864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=97.11  E-value=0.0006  Score=67.38  Aligned_cols=60  Identities=22%  Similarity=0.360  Sum_probs=50.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +..|++|.+.....  .....|.+|+.++ .++.||||++++
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRIL-SSLQHPNIVRYY   65 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHH-HHcCCCCEeeEE
Confidence            556678999999999999987  78999999865432  3457799999999 999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=97.11  E-value=0.00062  Score=68.10  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=49.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +..|++|.+......  ....|.+|+.++ .+++||||++++
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~-~~l~~~~i~~~~   65 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVL-ELLKHPNLVKYY   65 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHH-HhCCCCChhhee
Confidence            444578999999999999875  789999998654332  457789999999 999999999865

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=97.10  E-value=0.00045  Score=72.64  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=49.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  +..||||++...   .......|.+|+.++ ..++||||+.++
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   67 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVL-VNGDRRWITNLH   67 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHH-HhCCCCCCCceE
Confidence            4566678999999999999886  789999998642   122345688999999 999999999864

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=97.10  E-value=0.00047  Score=72.42  Aligned_cols=63  Identities=22%  Similarity=0.338  Sum_probs=49.8

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .++|.....||.|+||.||+|...  |..||||++...  .......+.+|+.++ .++ +||||++++
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l-~~l~~h~ni~~~~   73 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFL-QELGDHPNIVKLL   73 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHH-HHhcCCCCcccee
Confidence            345666678999999999999885  789999998542  223345678899999 999 999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=97.09  E-value=0.00044  Score=73.64  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||||++....   ......+..|+.++ .++.|||||+++
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il-~~~~~~~iv~~~   67 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDIL-VEADSLWVVKMF   67 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            5777789999999999999875  7899999995421   22245678899999 999999999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=97.09  E-value=0.00042  Score=70.65  Aligned_cols=58  Identities=16%  Similarity=0.193  Sum_probs=46.8

Q ss_pred             cCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ....||.|+||.||++...  |..||||.+.... ......|.+|+.++ .++. |||||+++
T Consensus         8 ~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l-~~~~~~~~iv~~~   69 (288)
T cd06616           8 DLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVV-MRSSDCPYIVKFY   69 (288)
T ss_pred             HHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHH-HHhcCCCCEeeee
Confidence            3457999999999999886  7899999986532 23346789999999 8886 99999864

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=97.09  E-value=0.00034  Score=74.96  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             HHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          522 EIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       522 el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++....++|.....||+|+||.||++...  +..||+|.+...   .......|.+|+.++ ..++||||++++
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~-~~~~hp~iv~~~  109 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIM-AFANSPWVVQLF  109 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            34444567777889999999999999886  689999998531   122345588999999 999999999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=97.09  E-value=0.00096  Score=67.03  Aligned_cols=60  Identities=23%  Similarity=0.376  Sum_probs=47.1

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---------hhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---------PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---------~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +..||+|.+.......         ...|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   72 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALL-KELQHENIVQYL   72 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHH-HhcCCCCeeeEE
Confidence            334568999999999999874  6899999885532221         24688999999 999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=97.08  E-value=0.00094  Score=68.15  Aligned_cols=61  Identities=28%  Similarity=0.371  Sum_probs=44.7

Q ss_pred             CCCcCCccccccceeEEEEEEc---CeEEEEEEccCCCC--CChhHHHHHHHHHHcCC---CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFI---FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~---g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~l---rHpNLV~li  590 (591)
                      .|.....||+|+||.||++...   |..||||.+.....  .....+.+|+.++ ..+   .||||++++
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~hpniv~~~   70 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL-RHLETFEHPNVVRLF   70 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHH-HhhcccCCCCcceEE
Confidence            3555678999999999999863   57899999864322  2234567787776 654   799999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=97.08  E-value=0.00071  Score=69.92  Aligned_cols=61  Identities=28%  Similarity=0.449  Sum_probs=47.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--C----eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--H----MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g----~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |    ..||+|.+..... .....|.+|+.++ .++.||||++++
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~-~~l~h~niv~~~   75 (303)
T cd05110           8 ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIM-ASMDHPHLVRLL   75 (303)
T ss_pred             hceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCcccEE
Confidence            3555678999999999999874  4    3589998865432 2234689999999 999999999864

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=97.08  E-value=0.00056  Score=68.72  Aligned_cols=60  Identities=25%  Similarity=0.434  Sum_probs=49.1

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|...+.||+|+||.||++... +..|++|.+.... .....|.+|+.++ .+++|+|++++.
T Consensus         7 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l-~~l~~~~i~~~~   67 (260)
T cd05073           7 SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVM-KTLQHDKLVKLH   67 (260)
T ss_pred             ceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHH-HhcCCCCcceEE
Confidence            3555678999999999999876 6789999886532 2346799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=97.08  E-value=0.00075  Score=68.98  Aligned_cols=61  Identities=25%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||||.+....  ......|.+|+.++ .+++ ||||++++
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~~i~~~~   67 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLL-QMLSESIYIVRLL   67 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHH-HHccCCCCcccee
Confidence            5677789999999999999986  7899999885432  22345788999999 8885 69999764

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=97.08  E-value=0.00049  Score=72.02  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=49.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||.+....   ......|..|+.++ ..++||||++++
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~-~~~~~~~i~~~~   67 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDIL-SISNSPWIPQLQ   67 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhCCCCCCccee
Confidence            5666789999999999999875  7899999996532   22346688999999 999999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=97.07  E-value=0.00063  Score=69.63  Aligned_cols=62  Identities=24%  Similarity=0.286  Sum_probs=49.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  +..|+||.+.....  .....+.+|+.++ .+++||||++++
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~h~ni~~~~   70 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINIL-LKLQHPNIVTVK   70 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHH-HhcCCCCEEEEE
Confidence            34566678999999999999986  78999999954322  2234578899999 999999999764

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=97.07  E-value=0.00066  Score=69.23  Aligned_cols=64  Identities=28%  Similarity=0.320  Sum_probs=52.6

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+++|.....||.|+||.||+|...  +..|++|.+..... ....|..|+.++ .+++|||+++++
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l-~~l~~~~i~~~~   81 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIM-KDCKHPNIVDYY   81 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHH-HHCCCCCeeEEE
Confidence            34455666678999999999999987  78999999965433 456799999999 999999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=97.06  E-value=0.00071  Score=69.75  Aligned_cols=55  Identities=27%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             ccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +||+|+||.||++...  |..||||.+..........|.+|+.++ .+++|||+++++
T Consensus        27 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   83 (292)
T cd06657          27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIM-RDYQHENVVEMY   83 (292)
T ss_pred             HcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHH-HhcCCcchhhee
Confidence            7899999999999885  789999998654444556799999999 999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=97.06  E-value=0.00059  Score=73.57  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=50.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCC-CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      .|.....||.|.||.||++...  |..+|+|.+......+   ...+.+|+.|| .++. |||+|.|.
T Consensus        36 ~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il-~~l~~hpniv~l~  102 (382)
T KOG0032|consen   36 KYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAIL-QQLSGHPNIVQLK  102 (382)
T ss_pred             cEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHH-HhccCCCCEEEEE
Confidence            3445578999999999999887  7899999996654433   35889999999 9998 99999874

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=97.06  E-value=0.0008  Score=70.63  Aligned_cols=61  Identities=21%  Similarity=0.284  Sum_probs=50.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .+|.....||.|+||.||+|...  |..||+|++....  ......+.+|+.++ .+++|||||++
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~   69 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKIL-RHFKHDNIIAI   69 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHH-HhcCCCCccCH
Confidence            56777788999999999999875  7899999986532  23356788899999 99999999975

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=97.06  E-value=0.00055  Score=69.08  Aligned_cols=61  Identities=25%  Similarity=0.334  Sum_probs=48.0

Q ss_pred             CCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|...+.||.|+||.||+|...     +..||+|.+.... ......|..|+.++ .+++||||++++
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   71 (267)
T cd05066           5 CIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIM-GQFDHPNIIHLE   71 (267)
T ss_pred             HeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            4555678999999999999874     2479999986532 22346799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=97.05  E-value=0.00046  Score=70.09  Aligned_cols=61  Identities=34%  Similarity=0.444  Sum_probs=48.0

Q ss_pred             CCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...+       ..||+|.+..... .....|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l-~~l~h~~i~~~~   74 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELM-SDLQHPNIVCLL   74 (283)
T ss_pred             HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHH-HhcCCcccceEE
Confidence            34556689999999999998752       5699999865332 2245699999999 999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.05  E-value=0.00089  Score=80.73  Aligned_cols=65  Identities=22%  Similarity=0.265  Sum_probs=50.1

Q ss_pred             cCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       518 ~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +++.++.   ..|...+.||+|+||.||+|...  |..||||.+.....    ....|+.++ .+++|||||+++
T Consensus       683 ~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~~l-~~l~HpnIv~~~  749 (968)
T PLN00113        683 ITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS----IPSSEIADM-GKLQHPNIVKLI  749 (968)
T ss_pred             hhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc----ccHHHHHHH-hhCCCCCcceEE
Confidence            4555554   34677789999999999999974  78999999864322    123568899 999999999875

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=97.04  E-value=0.00085  Score=68.40  Aligned_cols=60  Identities=25%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             CCcCCccccccceeEEEEEEc--Ce----EEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HM----QVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~----~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||+|.+.  |.    .|++|.+..... .....|..|+.++ .++.|||||+++
T Consensus         9 ~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l-~~l~h~~iv~~~   75 (279)
T cd05111           9 LRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAM-GSLDHAYIVRLL   75 (279)
T ss_pred             ceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHH-hcCCCCCcceEE
Confidence            455578999999999999884  43    588888854322 2246788899899 999999999864

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=97.04  E-value=0.00083  Score=68.98  Aligned_cols=62  Identities=23%  Similarity=0.366  Sum_probs=49.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||.|+||.||++...  |..||||.+....  ......+.+|+.++ .+++||||++++
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   77 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKIL-QLLKHENVVNLI   77 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHH-HhCCCCCccceE
Confidence            35666788999999999999886  7899999885432  22234567899999 999999999764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=97.04  E-value=0.00043  Score=69.85  Aligned_cols=60  Identities=25%  Similarity=0.351  Sum_probs=47.5

Q ss_pred             CCcCCccccccceeEEEEEEc--C---eEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--H---MQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g---~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +   ..||||.+... .......|..|+.++ .++.||||++++
T Consensus         6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~ni~~~~   71 (269)
T cd05065           6 VKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIM-GQFDHPNIIHLE   71 (269)
T ss_pred             eEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHH-HhCCCcCcceEE
Confidence            344568999999999999885  3   36999998653 222346799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=97.04  E-value=0.00066  Score=71.41  Aligned_cols=62  Identities=21%  Similarity=0.271  Sum_probs=49.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||.|+||.||++...  |..||||.+...  .......+.+|+.++ ..++||||++++
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~ni~~~~   70 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLL-RHLDHENVIAIK   70 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHH-HhcCCCCccchH
Confidence            35666778999999999999875  789999998653  223345678999999 999999999763

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=97.04  E-value=0.00062  Score=69.13  Aligned_cols=61  Identities=25%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  +..||||.+...  .......|.+|+.++ .++.||||++++
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   66 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVL-RQLRHENIVNLK   66 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHH-HhcCCCCeeehh
Confidence            4556678999999999999986  689999998643  223356799999999 999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=97.03  E-value=0.00038  Score=72.68  Aligned_cols=62  Identities=21%  Similarity=0.293  Sum_probs=51.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|...++||+|+||.||...-.  ++.+|+|+|.....   ........|..|| .+++||.||.|+
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL-~~v~hPFiv~l~   91 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNIL-SKIKHPFIVKLI   91 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHH-HhCCCCcEeeeE
Confidence            56888899999999999988775  78999999966322   2345678999999 999999999875

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=97.03  E-value=0.00085  Score=67.24  Aligned_cols=59  Identities=27%  Similarity=0.432  Sum_probs=47.6

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|... +..+|+|.+.... .....|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (256)
T cd05059           6 LTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA-MSEDDFIEEAKVM-MKLSHPNLVQLY   65 (256)
T ss_pred             cchhhhhccCCCceEEEeEecCCccEEEEEeccCC-CCHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            444568999999999999887 5689999985432 2346799999999 999999999764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>PHA03211 serine/threonine kinase US3; Provisional

Probab=97.02  E-value=0.00056  Score=75.71  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=46.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||.|+||.||++...  +..||||...      ...+.+|+.+| .+++|||||+++
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL-~~L~HpnIv~l~  226 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLL-RRLSHPAVLALL  226 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHH-HHCCCCCCCcEE
Confidence            45666778999999999999987  6889999642      23478999999 999999999875

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=97.02  E-value=0.00074  Score=68.13  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=45.8

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---C-------ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---Q-------GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~-------~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||.|+||.||+|...  |..||||.+.....   .       ..+.|.+|+.++ .+++|||+++++
T Consensus         4 ~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   74 (272)
T cd06629           4 VKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETL-KDLDHLNIVQYL   74 (272)
T ss_pred             eecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHH-HhcCCCCcceEE
Confidence            34568999999999999864  78999998853211   1       124578899999 999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=97.02  E-value=0.00069  Score=70.53  Aligned_cols=60  Identities=27%  Similarity=0.261  Sum_probs=48.5

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||++...  |..||+|.+......   ....|.+|+.++ .+++|||+|+++
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   91 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFL-QRIKHPNSIEYK   91 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            556678999999999999875  789999998643222   235688999999 999999999764

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=97.02  E-value=0.00064  Score=68.14  Aligned_cols=61  Identities=16%  Similarity=0.146  Sum_probs=49.5

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  +..|++|.+.... ......|.+|+.++ .+++||||++++
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   65 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDIL-HKCNSPYIVGFY   65 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHH-HHCCCCchhhhh
Confidence            3445568999999999999987  7899999986543 23456799999999 999999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=97.01  E-value=0.00068  Score=69.34  Aligned_cols=61  Identities=25%  Similarity=0.345  Sum_probs=48.4

Q ss_pred             CCCcCCccccccceeEEEEEEcC------------------eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCcccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRH------------------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g------------------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .|.....||+|+||.||++...+                  ..||+|.+..... .....|.+|+.++ .+++||||+++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~   84 (296)
T cd05051           6 PLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKIL-SRLSDPNIARL   84 (296)
T ss_pred             hCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHH-HhcCCCCEeEE
Confidence            45566789999999999987642                  4589999865432 3356799999999 99999999986


Q ss_pred             c
Q 007740          590 F  590 (591)
Q Consensus       590 i  590 (591)
                      +
T Consensus        85 ~   85 (296)
T cd05051          85 L   85 (296)
T ss_pred             E
Confidence            4

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.01  E-value=0.00071  Score=72.76  Aligned_cols=63  Identities=17%  Similarity=0.305  Sum_probs=49.4

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC----CC-CChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH----SL-QGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~----~~-~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ..+|.....||+|+||.||.|...  |..||||++...    .. .......+|+.++ .+++ ||||++++
T Consensus        16 ~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~-~~~~~HpnI~~l~   86 (370)
T KOG0583|consen   16 IGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISIL-RRLRSHPNIIRLL   86 (370)
T ss_pred             cCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHH-HHhccCCCEeEEE
Confidence            445666788999999999999875  899999977553    11 2234566899999 9999 99999874

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=97.01  E-value=0.00088  Score=66.66  Aligned_cols=60  Identities=17%  Similarity=0.279  Sum_probs=48.7

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  +..+|||.+....  ......|.+|+.++ .+++||||++++
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   65 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVL-KLLSHPNIIEYY   65 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHH-hhCCCCchhhee
Confidence            555678999999999998875  7899999986532  23356799999999 999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=97.00  E-value=0.00063  Score=72.30  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||||++...   .......|..|+.++ ..++||||++++
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~iv~~~   67 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDIL-VEADGAWVVKMF   67 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            5666788999999999999886  789999999642   122345688899999 999999999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=97.00  E-value=0.00085  Score=68.74  Aligned_cols=60  Identities=22%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++...  +..||||.+.....   .....+.+|+.++ .+++|+|++.++
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il-~~l~~~~i~~~~   66 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQIL-EKVNSRFVVSLA   66 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHH-HhCCCCCeeeee
Confidence            445568999999999999886  68999999865322   2234578899999 999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=96.99  E-value=0.00093  Score=69.25  Aligned_cols=61  Identities=18%  Similarity=0.227  Sum_probs=50.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  +..||||.+......   ....|..|+.++ .++.||||++++
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   67 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEIL-ATLDHPFLPTLY   67 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHH-HhCCCCCchhhe
Confidence            4666778999999999999886  689999999654322   346789999999 999999999875

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=96.99  E-value=0.00053  Score=70.59  Aligned_cols=56  Identities=30%  Similarity=0.331  Sum_probs=47.0

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|+||.||++...  +..||||.+..........|.+|+.++ .+++||||++++
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~h~~ii~~~   85 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIM-RDYHHENVVDMY   85 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHH-HhCCCCcHHHHH
Confidence            46999999999999875  789999998654444456799999999 999999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=96.98  E-value=0.00091  Score=67.17  Aligned_cols=59  Identities=31%  Similarity=0.509  Sum_probs=47.8

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++... +..||+|.+.... .....|.+|+.++ .++.|||+++++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l-~~l~h~~i~~~~   67 (260)
T cd05069           8 LRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIM-KKLRHDKLVPLY   67 (260)
T ss_pred             eeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            444568999999999999887 4579999986543 2346799999999 999999999763

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=96.98  E-value=0.00025  Score=74.62  Aligned_cols=56  Identities=20%  Similarity=0.368  Sum_probs=46.5

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|.||.|-++.-+  |..||||.+..+....   .-...+|++|| +.++||||+.++
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIM-SsLNHPhII~Iy  119 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIM-SSLNHPHIIQIY  119 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHH-hhcCCCceeehh
Confidence            46999999999999764  8999999997765443   34468999999 999999998764

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=96.98  E-value=0.00072  Score=69.27  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  +..||+|.+....   ......|.+|+.++ .++.||||++++
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   67 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRIL-QSIRHPFLVNLY   67 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhCCCCCcccee
Confidence            4555678999999999999885  6899999985422   22346789999999 999999999864

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=96.98  E-value=0.00087  Score=68.08  Aligned_cols=60  Identities=32%  Similarity=0.450  Sum_probs=47.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  |..||+|.+....  ......+.+|+.++ .+++||||++++
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l-~~l~h~~i~~~~   65 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL-KELKHKNIVRLY   65 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHH-HhcCCCCeeeHH
Confidence            444567999999999999985  7899999985432  12235688899999 999999999764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=96.97  E-value=0.0012  Score=65.04  Aligned_cols=60  Identities=30%  Similarity=0.473  Sum_probs=51.1

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  |..|++|++..........|.+|+..+ .+++|||+++++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   63 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQIL-KKCKHPNIVKYY   63 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            555678999999999999986  789999999765544567899999999 999999998764

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=96.97  E-value=0.001  Score=65.87  Aligned_cols=60  Identities=28%  Similarity=0.399  Sum_probs=49.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  +..|++|.+.....  .....|.+|+.++ .+++|||+++++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLL-KNLKHPNIVKYI   65 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHH-HhCCCCCccEEE
Confidence            455678999999999999875  68999999966443  3456799999999 999999998764

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=96.96  E-value=0.00069  Score=70.11  Aligned_cols=62  Identities=26%  Similarity=0.433  Sum_probs=49.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|...+.||.|+||.||++...       +..||||++..... .....|.+|+.++ .++ +||||++++
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~iv~~~  105 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIM-SHLGNHENIVNLL  105 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHH-HhccCCCCcceEE
Confidence            46777889999999999999751       35799999865322 2245699999999 999 899999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=96.96  E-value=0.00096  Score=68.05  Aligned_cols=60  Identities=25%  Similarity=0.362  Sum_probs=47.9

Q ss_pred             CCcCCccccccceeEEEEEEc------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||.+.+.      +..||+|.+.... ......|.+|+.++ .++.||||++++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   72 (284)
T cd05079           6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEIL-RNLYHENIVKYK   72 (284)
T ss_pred             hhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHH-HhCCCCCeeeee
Confidence            444568999999999999752      5789999996543 23346799999999 999999999763

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>PHA03209 serine/threonine kinase US3; Provisional

Probab=96.96  E-value=0.00082  Score=71.53  Aligned_cols=56  Identities=11%  Similarity=0.052  Sum_probs=45.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||+|+||.||+|...  +..||+|.....      .+..|+.++ .+++|||||+++
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l-~~l~h~~iv~~~  123 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLL-QNVNHPSVIRMK  123 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHH-HhCCCCCCcChh
Confidence            35666778999999999999987  578999975332      345799999 999999999875

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=96.95  E-value=0.00075  Score=68.57  Aligned_cols=61  Identities=21%  Similarity=0.321  Sum_probs=47.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--Ce----EEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HM----QVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~----~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||.|+||.||+|...  |.    .||+|.+..... .....|.+|+.++ ..+.||||+.++
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   75 (279)
T cd05109           8 ELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVM-AGVGSPYVCRLL   75 (279)
T ss_pred             heeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHH-HhcCCCCCceEE
Confidence            4556678999999999999864  43    589999865332 2356789999999 999999998764

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=96.95  E-value=0.00082  Score=68.29  Aligned_cols=71  Identities=23%  Similarity=0.381  Sum_probs=56.2

Q ss_pred             cCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       518 ~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .++.++..+...|.....||.|+||.||+|...  +..||+|.+.... .....|..|+.++ .++ +||||++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l-~~~~~h~~i~~~~   79 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINML-KKYSHHRNIATYY   79 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHH-HHhcCCCcEEEEe
Confidence            355666667777888889999999999999985  7899999985432 2345788999999 887 799999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=96.95  E-value=0.00052  Score=71.32  Aligned_cols=56  Identities=32%  Similarity=0.450  Sum_probs=45.7

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCC-CC-hhHHHHHHHHHHcCCCCCC-ccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QG-PSEFQQEVGAYESFIFHFN-LVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~-~~~F~~Ev~il~s~lrHpN-LV~li  590 (591)
                      .+||+|.||.||+|...  |..||+|++.-... .+ ...-.+|+.++ .+++|+| ||.|.
T Consensus        17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisll-k~L~~~~~iv~L~   77 (323)
T KOG0594|consen   17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLL-KRLSHANHIVRLH   77 (323)
T ss_pred             HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHH-HHhCCCcceEEEE
Confidence            46999999999999886  88999999965433 22 34458999999 9999999 98774

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=96.95  E-value=0.00052  Score=76.63  Aligned_cols=60  Identities=20%  Similarity=0.321  Sum_probs=43.4

Q ss_pred             hhcCCCcCCccccccceeEEEEEE------------------cCeEEEEEEccCCCCCChhHHH--------------HH
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLL------------------RHMQVAIKMLHPHSLQGPSEFQ--------------QE  573 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l------------------~g~~VAVK~L~~~~~~~~~~F~--------------~E  573 (591)
                      .+++|...++||+|+||.||+|.+                  .+..||||++..........|.              .|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999974                  1467999999654333333444              46


Q ss_pred             HHHHHcCCCCCCc
Q 007740          574 VGAYESFIFHFNL  586 (591)
Q Consensus       574 v~il~s~lrHpNL  586 (591)
                      +..+ .+++|.|+
T Consensus       223 ~~~l-~~l~~~~l  234 (507)
T PLN03224        223 AYMC-AKIKRNPI  234 (507)
T ss_pred             HHHH-HHhhcccc
Confidence            6666 66766665

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=96.94  E-value=0.0008  Score=68.84  Aligned_cols=63  Identities=21%  Similarity=0.363  Sum_probs=48.6

Q ss_pred             hcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++.|.....||.|+||.||+|...       +..||+|.+..... .....|.+|+.++ .+++||||++++
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   75 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVM-KGFTCHHVVRLL   75 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            345666678999999999999753       35799999864322 2235688999999 999999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=96.94  E-value=0.00072  Score=69.46  Aligned_cols=62  Identities=23%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc------------------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR------------------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVD  588 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~------------------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~  588 (591)
                      ++|.....||+|+||.||++...                  +..||+|.+..... .....|.+|+.++ .+++||||++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l-~~l~~~~i~~   83 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIM-SRLKDPNIIR   83 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCcce
Confidence            34666678999999999987532                  24689999965432 2346799999999 9999999987


Q ss_pred             cc
Q 007740          589 SF  590 (591)
Q Consensus       589 li  590 (591)
                      ++
T Consensus        84 ~~   85 (296)
T cd05095          84 LL   85 (296)
T ss_pred             EE
Confidence            64

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=96.93  E-value=0.0009  Score=67.99  Aligned_cols=60  Identities=25%  Similarity=0.403  Sum_probs=48.2

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  +..||||.+... .......|.+|+.++ .+++||||++++
T Consensus         6 y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (277)
T cd06640           6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVL-SQCDSPYVTKYY   68 (277)
T ss_pred             hhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            444568999999999999875  789999998543 223356789999999 999999999764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=96.93  E-value=0.0011  Score=67.40  Aligned_cols=59  Identities=24%  Similarity=0.328  Sum_probs=46.5

Q ss_pred             CcCCccccccceeEEEEEEc------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||.|+||.||.+.+.      +..||+|.+.... ......|.+|+.++ .+++||||++++
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   72 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINIL-KTLYHENIVKYK   72 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            44568999999999886542      5789999996543 23456789999999 999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=96.92  E-value=0.00083  Score=67.43  Aligned_cols=64  Identities=28%  Similarity=0.349  Sum_probs=52.7

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .++++|.....||.|+||.||+|...  +..+++|.+..... ....|.+|+.++ .++ .||||++++
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l-~~~~~h~~i~~~~   69 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNIL-RKYSNHPNIATFY   69 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHH-HHhcCCCChheEE
Confidence            45677888889999999999999986  67899999865432 346799999999 888 799999864

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=96.92  E-value=0.0015  Score=68.34  Aligned_cols=66  Identities=18%  Similarity=0.178  Sum_probs=53.3

Q ss_pred             ccCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          517 DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       517 ~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++..+|+..       +.||+|..|+|||+..+  +..+|+|.++.... .-.++..+|+.++ .+++||+||.++
T Consensus        75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il-~~~~spyIV~~y  143 (364)
T KOG0581|consen   75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEIL-RSCQSPYIVGFY  143 (364)
T ss_pred             ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHH-hhCCCCCeeeEe
Confidence            3566676543       58999999999999997  78999999954332 2357789999999 999999999875

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=96.92  E-value=0.0011  Score=67.29  Aligned_cols=62  Identities=15%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||||.+.... ......+..|+.++-..+.|||||+++
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~   66 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFY   66 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence            5666778999999999999886  7899999986532 223345667776531667999999864

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=96.92  E-value=0.00071  Score=68.40  Aligned_cols=61  Identities=23%  Similarity=0.407  Sum_probs=48.5

Q ss_pred             CCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...+       ..||+|.+..... .....|.+|+.++ ..+.||||++++
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   75 (277)
T cd05032           7 KITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVM-KEFNCHHVVRLL   75 (277)
T ss_pred             HeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHH-HhCCCCceeEEE
Confidence            45556789999999999998752       6799999865432 2345789999999 999999999874

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=96.92  E-value=0.0012  Score=67.12  Aligned_cols=60  Identities=28%  Similarity=0.390  Sum_probs=44.8

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCC---CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFI---FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~l---rHpNLV~li  590 (591)
                      |.....||+|+||.||++...  |..||+|.+.....  .....+.+|+.++ .++   .||||++++
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~h~ni~~~~   68 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALL-KRLEAFDHPNIVRLM   68 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHH-HHhhhcCCCCeeeee
Confidence            444568999999999999886  78999999865322  2234567788777 655   799999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=96.91  E-value=0.00085  Score=68.14  Aligned_cols=60  Identities=25%  Similarity=0.429  Sum_probs=47.5

Q ss_pred             CCcCCccccccceeEEEEEEc--C----eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--H----MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g----~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...  |    ..||+|.+..... .....|.+|+.++ .++.||||++++
T Consensus         9 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   75 (279)
T cd05057           9 LEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVM-ASVDHPHVVRLL   75 (279)
T ss_pred             cEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            444568999999999999874  3    3689998865432 2346789999999 999999999874

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=96.91  E-value=0.00089  Score=69.18  Aligned_cols=61  Identities=21%  Similarity=0.333  Sum_probs=50.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||++...  +..|+||.+.....   .....|.+|+.++ ..++||||++++
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   67 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDIL-TFAENPFVVSMF   67 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHH-HhCCCCCeeeeE
Confidence            5666788999999999999886  68999999865321   2345788999999 999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=96.90  E-value=0.0011  Score=70.08  Aligned_cols=63  Identities=19%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+.|.....||+|+||.||++...  |..||||.+...  .......+.+|+.++ .++.||||++++
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   81 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLM-KLVNHKNIIGLL   81 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHH-HhcCCCCCccee
Confidence            356777788999999999999875  789999998532  222345688999999 999999999764

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.90  E-value=0.00087  Score=71.65  Aligned_cols=59  Identities=25%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC-hhHHHHHHHHHHcCCCCCCcccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~-~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      |.....||.|.-+.||.+...  +..||||+++-....+ .....+|+..| +-++|||||+.
T Consensus        28 YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~m-sl~~HPNIv~~   89 (516)
T KOG0582|consen   28 YELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTM-SLIDHPNIVTY   89 (516)
T ss_pred             eeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHh-hhcCCCCcceE
Confidence            444568999999999999775  8999999997643333 57789999999 99999999975

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=96.89  E-value=0.0009  Score=69.22  Aligned_cols=62  Identities=21%  Similarity=0.405  Sum_probs=47.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--Ce--EEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HM--QVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~--~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |.  .+++|.+.... ......|.+|+.++ .++ +||||++++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l-~~l~~h~~iv~~~   74 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVL-CKLGHHPNIINLL   74 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHH-HHhcCCCCcceEE
Confidence            34566678999999999999875  43  46888875432 23346789999999 999 899999864

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=96.88  E-value=0.0014  Score=68.68  Aligned_cols=57  Identities=25%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCCCC--------------hhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG--------------PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~--------------~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||.|+||.||++...  |..||||.+.......              ...+.+|+.++ .+++||||++++
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   86 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIM-NEIKHENIMGLV   86 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHH-HhCCCcceeeee
Confidence            357999999999999865  7899999985422111              12578999999 999999999764

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=96.88  E-value=0.0013  Score=68.69  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=49.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..||||++....  ......|..|+.++ ..++||||++++
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLL-RHLRHENIIGLL   65 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHH-HhcCCcchhhhh
Confidence            445578999999999999986  7899999996543  33456799999999 999999998764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=96.88  E-value=0.00077  Score=69.09  Aligned_cols=61  Identities=25%  Similarity=0.430  Sum_probs=48.7

Q ss_pred             CCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...       +..|++|.+..........|.+|+.++ .+++||||++++
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   73 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELL-TNLQHEHIVKFY   73 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHH-hcCCCCCcceEE
Confidence            3555678999999999999753       356899998655444456799999999 999999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=96.88  E-value=0.00073  Score=71.35  Aligned_cols=60  Identities=22%  Similarity=0.348  Sum_probs=46.3

Q ss_pred             CCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      |.....||.|+||.||+|...       +..||+|++..... .....+.+|+.++ .++ +||||++++
T Consensus         9 ~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~-~~l~~h~niv~~~   77 (337)
T cd05054           9 LKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKIL-IHIGHHLNVVNLL   77 (337)
T ss_pred             hhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHH-HhhccCcchhhee
Confidence            445578999999999999753       36799999964322 2235678899999 889 899999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=96.86  E-value=0.0012  Score=65.97  Aligned_cols=60  Identities=28%  Similarity=0.278  Sum_probs=48.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.+|++...  |..||||.+...  .......|.+|+.++ .++.||||++++
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVL-SNMKHPNIVQYQ   65 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHH-HhCCCCCeeeeE
Confidence            555678999999999998875  789999998542  223346799999999 999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=96.86  E-value=0.00085  Score=70.50  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=48.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  +..||||.+...   .......|..|+.++ ..+.||||+.++
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~l~   67 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVL-VNGDCQWITTLH   67 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            5666778999999999999886  688999998542   112234588899999 999999999764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=96.86  E-value=0.0013  Score=67.33  Aligned_cols=57  Identities=28%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      -+.||.|+||.||++...  +..|+||.+..........|.+|+.++ .++.||||++++
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l-~~~~h~~vv~~~   82 (285)
T cd06648          24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIM-RDYQHPNIVEMY   82 (285)
T ss_pred             ceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHH-HHcCCCChheEE
Confidence            458999999999999875  689999998654444456789999999 999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=96.85  E-value=0.00082  Score=70.05  Aligned_cols=63  Identities=19%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccC--CCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHP--HSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~--~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...|.....||.|.||.|.++...  |..||||++..  ......+.-.+|+.+| ..++|+||+.++
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklL-r~~~HeNIi~l~   87 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLL-RHLRHENIIGLL   87 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHH-HHhcCCCcceEE
Confidence            344555568999999999999886  89999999952  3333456678999999 999999999764

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=96.84  E-value=0.0014  Score=66.41  Aligned_cols=60  Identities=27%  Similarity=0.420  Sum_probs=48.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCC---CCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIF---HFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lr---HpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..||||.+.... ......|.+|+.++ .+++   |||+++++
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l-~~l~~~~~~~vi~~~   68 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALL-SQLRQSQPPNITKYY   68 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHH-HHhccCCCCCeeeEe
Confidence            455568999999999999985  7899999986532 33456789999999 8887   99999764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=96.84  E-value=0.0014  Score=68.63  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             Cccccc--cceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEG--GYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G--~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||+|  +|+.||++...  |..||||.+......  ....+..|+.++ ..++|||||+++
T Consensus         4 ~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l-~~l~hpniv~~~   65 (327)
T cd08227           4 TVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVS-KLFNHPNIVPYR   65 (327)
T ss_pred             hhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHH-HhcCCCCeeeEE
Confidence            478999  78899999886  789999999654221  234577899999 999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=96.83  E-value=0.0014  Score=68.19  Aligned_cols=60  Identities=23%  Similarity=0.258  Sum_probs=47.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...  |..|+||.+......   ....+.+|+.++ .+++|||+++++
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   87 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFL-QQLKHPNTIEYK   87 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHH-HhCCCCCCccEE
Confidence            344467999999999999875  789999998643222   234688999999 999999999764

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=96.82  E-value=0.00072  Score=75.55  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=53.2

Q ss_pred             HHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          522 EIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       522 el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      ++....++|.....||.|+||.||++...  |..||||++....  ......+.+|+.++ ..++|+|+|++
T Consensus        26 ~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l-~~~~h~~iv~~   96 (496)
T PTZ00283         26 TAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCL-LNCDFFSIVKC   96 (496)
T ss_pred             cccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHH-hcCCCCcEEEe
Confidence            33444567877889999999999999874  8999999986532  22345688999999 99999999874

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=96.82  E-value=0.0012  Score=68.02  Aligned_cols=61  Identities=25%  Similarity=0.479  Sum_probs=47.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--C--eEEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--H--MQVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g--~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |  ..+++|.+.... ......|.+|+.++ .++ +||||++++
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l-~~l~~hp~iv~~~   69 (297)
T cd05089           3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVL-CKLGHHPNIINLL   69 (297)
T ss_pred             cceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHH-HhhcCCCchhheE
Confidence            4566678999999999999885  3  357888886422 22346799999999 999 799999874

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=96.81  E-value=0.00092  Score=76.48  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=50.5

Q ss_pred             CcCCccccccceeEEEEEEc-C-eEEEEEEccCCCCCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR-H-MQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~-g-~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      .-.+.|-+|||+.||.+... + ..+|+|++-...........+||.+| .+|. |||||.++
T Consensus        40 ~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~M-K~L~gh~nIV~yi  101 (738)
T KOG1989|consen   40 TVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIM-KLLSGHKNIVSYI  101 (738)
T ss_pred             EEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHH-HHhcCCCceeeEe
Confidence            33568999999999999987 4 89999998666666778899999999 8886 99999876

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=96.81  E-value=0.0017  Score=64.33  Aligned_cols=60  Identities=17%  Similarity=0.318  Sum_probs=49.5

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  +..|++|.+.....  .....+.+|++++ .+++|||+++++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~~~~~~   65 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKIL-KKLNHPNIIKYY   65 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHH-HhcCCCChhheE
Confidence            555678999999999999987  78999999965432  3456789999999 999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain

Probab=96.79  E-value=0.019  Score=55.36  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=69.6

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +|+||+.|. ..|..++.++...+  .|.+|++|||-....         +                  ...+-.+....
T Consensus         1 ~v~va~SGG-~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~---------~------------------~~~~~~~~~~~   52 (189)
T TIGR02432         1 RILVAVSGG-VDSMALLHLLLKLQPKLKIRLIAAHVDHGLR---------P------------------ESDEEAEFVQQ   52 (189)
T ss_pred             CEEEEeCCC-HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC---------h------------------hHHHHHHHHHH
Confidence            589999999 99999998887765  356799999864321         0                  01123445566


Q ss_pred             HHHHcCCceEEEEEecCC--------hH--------HHHHHHHHHcCCCEEEEccCCCchhhHH
Q 007740          124 ICRQMGVRAEKLDTESES--------TE--------KGILELISHYGIRKLVMGAAADKHYKKK  171 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~~--------~~--------~~Ive~a~~~~idlIVmGs~g~~~~~R~  171 (591)
                      +|...||++..+.+....        ..        ..+.++|.++|++.|+.|.+......+.
T Consensus        53 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~  116 (189)
T TIGR02432        53 FCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETI  116 (189)
T ss_pred             HHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHH
Confidence            788889998766553221        22        5788899999999999999986654443

The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=96.79  E-value=0.0013  Score=66.20  Aligned_cols=61  Identities=18%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      +|.....||.|+||.||++...  |..||+|++....   ......+..|+.++ .+++ ||||++++
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~-~~l~~~~~i~~~~   68 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVL-TRLNGHPGIIKLY   68 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHH-HhcccCCCchhHH
Confidence            4566678999999999999985  7899999986522   12245688999999 9999 99999764

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=96.79  E-value=0.0016  Score=65.00  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=48.0

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  +..+|+|.+... .......+.+|+.++ ..+.||||++++
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   64 (255)
T cd08219           2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLL-AKMKHPNIVAFK   64 (255)
T ss_pred             ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            444568999999999999875  789999988532 233456788999999 999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=96.78  E-value=0.0016  Score=64.90  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||.+...  |..|++|.+...  .......|.+|+.++ .+++||||++++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~   65 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVIL-SLLQHPNIIAYY   65 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHH-HhCCCCCeeEEE
Confidence            555678999999988877654  789999998543  233456799999999 999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.78  E-value=0.0014  Score=76.08  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||.|+||.||+|...  +..||||++......   ....|..|+.++ ..++|||||+++
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l-~~l~hp~Iv~~~   70 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDAL-ALSKSPFIVHLY   70 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHH-HhcCCCCcCeEE
Confidence            35666678999999999999987  789999999653222   236788999999 999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=96.78  E-value=0.0011  Score=69.58  Aligned_cols=61  Identities=18%  Similarity=0.196  Sum_probs=48.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||+|+||.||++...  +..||+|++...   .......|..|+.++ ..++||||++++
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   67 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVL-VNGDNQWITTLH   67 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHH-hhCCCCCEeeEE
Confidence            5666778999999999999987  578999998532   112234588999999 999999998764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=96.75  E-value=0.0015  Score=77.72  Aligned_cols=63  Identities=19%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||++...  +..||+|.+....  ......|..|+.++ .+++|||||+++
T Consensus        12 l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL-~~L~HPNIVrl~   78 (1021)
T PTZ00266         12 LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVM-RELKHKNIVRYI   78 (1021)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHH-HHcCCCCcCeEE
Confidence            345666778999999999999886  6789999986432  22346799999999 999999999875

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=96.74  E-value=0.0009  Score=68.40  Aligned_cols=62  Identities=24%  Similarity=0.385  Sum_probs=48.3

Q ss_pred             cCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...+       ..||+|.+.... ......|.+|+.++ .++ +||||++++
T Consensus        12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~i~~~~   82 (293)
T cd05053          12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMM-KMIGKHKNIINLL   82 (293)
T ss_pred             hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHH-HhhcCCCCeeeEE
Confidence            446666789999999999998742       579999986532 22345689999999 888 899999764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=96.74  E-value=0.0019  Score=65.45  Aligned_cols=59  Identities=24%  Similarity=0.246  Sum_probs=45.8

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      .....||.|+||.||+|...  +..|+||.+..... .....+.+|+..+ .+++ ||||++++
T Consensus         2 ~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l-~~~~~h~~i~~~~   64 (283)
T cd07830           2 KVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSL-RKLNEHPNIVKLK   64 (283)
T ss_pred             eeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHH-HhccCCCCchhHH
Confidence            34568999999999999986  67899999854322 2233456799999 9999 99999764

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=96.72  E-value=0.0014  Score=68.57  Aligned_cols=58  Identities=21%  Similarity=0.145  Sum_probs=42.9

Q ss_pred             cCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHH---HHcCCCCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGA---YESFIFHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~i---l~s~lrHpNLV~li  590 (591)
                      ....||+|+||.||++...  |..||||.+....   ......+.+|+.+   + .+++||||++++
T Consensus         3 i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~-~~l~hp~i~~~~   68 (324)
T cd05589           3 CLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETA-NSERHPFLVNLF   68 (324)
T ss_pred             EEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhc-cccCCCChhcee
Confidence            3468999999999999886  7899999996421   2223456666544   4 578899999864

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=96.70  E-value=0.0013  Score=69.43  Aligned_cols=63  Identities=21%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||+|...  +..||||.+...  .......+.+|+.++ .++.||||++++
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   80 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLL-KHMDHENVIGLL   80 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHH-HhccCCCHHHHH
Confidence            456767789999999999999986  689999998542  222345678899999 999999998753

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=96.69  E-value=0.0025  Score=61.67  Aligned_cols=59  Identities=27%  Similarity=0.447  Sum_probs=49.6

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||.|+||.||++...  +..+++|.+...... ....|.+|+..+ .+++|+|+++++
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~-~~~~~~~i~~~~   63 (225)
T smart00221        2 ELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRIL-KKLKHPNIVKLY   63 (225)
T ss_pred             ceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHH-HhCCCCChhhhe
Confidence            44568999999999999997  589999999765444 567899999999 999999998764

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=96.69  E-value=0.0013  Score=67.98  Aligned_cols=61  Identities=23%  Similarity=0.345  Sum_probs=47.7

Q ss_pred             CCCcCCccccccceeEEEEEEc---------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|.....||+|+||.||++...         +..||+|.+.... ......|..|+.++ .++ +||||++++
T Consensus        19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l-~~l~~h~~i~~~~   90 (307)
T cd05098          19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM-KMIGKHKNIINLL   90 (307)
T ss_pred             HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHH-HHhcCCCCEeeEE
Confidence            4666678999999999998753         2469999997542 23345688999999 888 899999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PHA03207 serine/threonine kinase US3; Provisional

Probab=96.68  E-value=0.0018  Score=69.95  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=45.6

Q ss_pred             CCCcCCccccccceeEEEEEEc----CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR----HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||.|+||.||++...    +..|+||.+...     ..+.+|+.++ .+++|||||+++
T Consensus        93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il-~~l~h~~iv~~~  152 (392)
T PHA03207         93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDIL-KTISHRAIINLI  152 (392)
T ss_pred             ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHH-HhcCCCCcccee
Confidence            4666678999999999999764    467999988542     3467899999 999999999875

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=96.66  E-value=0.066  Score=57.55  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCC---CCC----hhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQG----PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~----~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++||+|||..|||++--  ...||||+-+...   ...    .+--++|-.|- ..+.||.||+++
T Consensus       468 LhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIH-KeLDHpRIVKlY  533 (775)
T KOG1151|consen  468 LHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIH-KELDHPRIVKLY  533 (775)
T ss_pred             HHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhh-hccCcceeeeee
Confidence            457999999999999754  6889999874321   111    12346788888 899999999885

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=96.63  E-value=0.0025  Score=64.32  Aligned_cols=58  Identities=29%  Similarity=0.354  Sum_probs=47.5

Q ss_pred             cCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...+||.|+||.||+|...  +..||+|.+....  ......|..|+.++ .++.||||++++
T Consensus         3 ~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~   64 (282)
T cd07829           3 KLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLL-KELKHPNIVKLL   64 (282)
T ss_pred             eehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHH-HhcCCCCHHHHH
Confidence            3467999999999999986  7899999996542  22346788999999 999999999764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=96.63  E-value=0.0012  Score=72.25  Aligned_cols=61  Identities=21%  Similarity=0.336  Sum_probs=49.2

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          515 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+++.|++|.+.       .-||.|.-|.||.|.|.+..||||+.+..       -..+|..| .+|+||||+.|.
T Consensus       118 ~WeiPFe~IsEL-------eWlGSGaQGAVF~Grl~netVAVKKV~el-------kETdIKHL-RkLkH~NII~Fk  178 (904)
T KOG4721|consen  118 LWEIPFEEISEL-------EWLGSGAQGAVFLGRLHNETVAVKKVREL-------KETDIKHL-RKLKHPNIITFK  178 (904)
T ss_pred             hccCCHHHhhhh-------hhhccCcccceeeeeccCceehhHHHhhh-------hhhhHHHH-HhccCcceeeEe
Confidence            346777777443       35899999999999999999999998542       23578899 999999999874

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=96.63  E-value=0.0016  Score=67.26  Aligned_cols=61  Identities=23%  Similarity=0.371  Sum_probs=47.3

Q ss_pred             CCCcCCccccccceeEEEEEEc---------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|.....||+|+||.||++...         +..||+|.+.... ......|.+|+.++ ..+ +||||++++
T Consensus        16 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~i~~~~   87 (304)
T cd05101          16 KLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM-KMIGKHKNIINLL   87 (304)
T ss_pred             HeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHH-HhhccCCCchhee
Confidence            3555678999999999999742         3479999986432 23356789999999 888 899999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=96.60  E-value=0.0027  Score=63.95  Aligned_cols=61  Identities=21%  Similarity=0.368  Sum_probs=45.5

Q ss_pred             CCcCCccccccceeEEEEEEc---CeEEEEEEccCCC----------CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPHS----------LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~---g~~VAVK~L~~~~----------~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||+|...   +..||+|.+....          ......+.+|+.++...++||||++++
T Consensus         2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~   75 (269)
T cd08528           2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYY   75 (269)
T ss_pred             chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEE
Confidence            555678999999999999986   4789999884321          112355788998882358999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=96.60  E-value=0.0025  Score=63.50  Aligned_cols=60  Identities=25%  Similarity=0.215  Sum_probs=48.0

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  +..||+|.+....  ......|.+|+.++ .+++|||+++++
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (257)
T cd08223           2 YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLL-SQLKHPNIVAYR   65 (257)
T ss_pred             ceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHH-HhCCCCCeeeee
Confidence            444568999999999999875  6889999985432  23346789999999 999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=96.58  E-value=0.0012  Score=65.81  Aligned_cols=57  Identities=26%  Similarity=0.483  Sum_probs=44.5

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCCCCh--hHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGP--SEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~--~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||+|+||.||++...  +..||+|.+........  ....+|+.++ .+++||||++++
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~-~~l~~~~i~~~~   64 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKIL-RRLRHPNIVQIL   64 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHH-HHHTBTTBCHEE
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcc-cccccccccccc
Confidence            357999999999999987  57899999976543221  2235699999 999999999764

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=96.56  E-value=0.0028  Score=66.46  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=46.8

Q ss_pred             CCcCCccccccceeEEEEEEc----CeEEEEEEccCC--CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR----HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      |.....||.|+||.||++...    +..||||.+...  .......+.+|+.++ .++ .|||||+++
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~iv~~~   68 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLL-RHFRGHKNITCLY   68 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHH-HHhcCCCChheee
Confidence            445568999999999999985    458999998542  222345788999999 888 499999874

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=96.53  E-value=0.0017  Score=72.10  Aligned_cols=60  Identities=13%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             CCcCCccccccceeEEEEEEc---CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~---g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++.-.   +..|++|.+..........|.+|+.++ .+++|||||+++
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l-~~l~Hpniv~~~  131 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCL-AACDHFGIVKHF  131 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            455678999999999999754   567899877544333345678899999 999999999874

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=96.53  E-value=0.0028  Score=62.90  Aligned_cols=60  Identities=25%  Similarity=0.308  Sum_probs=48.0

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||.|+||.||++...  |..+++|.+....  ......|.+|+.++ .+++||||++++
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   65 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRIL-ASVNHPNIISYK   65 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHH-HhCCCCCchhhh
Confidence            555678999999999999775  6889999985432  23345788999999 999999999763

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=96.51  E-value=0.0023  Score=66.32  Aligned_cols=60  Identities=23%  Similarity=0.234  Sum_probs=47.2

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||.|+||.||+|...  |..||||.+....   ......|.+|+.++ ..++|||+++++
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   81 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL-QKLRHPNTIQYR   81 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHH-HhCCCCCcccEE
Confidence            444467999999999999985  6889999985422   12245688999999 999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=96.49  E-value=0.0037  Score=63.18  Aligned_cols=57  Identities=30%  Similarity=0.327  Sum_probs=46.7

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||.|+||.||++...  |..+++|.+.....  .....+.+|+.++ .+++||||++++
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~   64 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLL-KELNHPNIIKLL   64 (283)
T ss_pred             ceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHH-HHhcCCCcchHH
Confidence            457999999999999885  78999999865322  2356788999999 999999999764

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=96.49  E-value=0.004  Score=62.97  Aligned_cols=57  Identities=26%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ...||.|+||.||+|...  +..||+|.+.... ......+.+|+.++ .++. |||+++++
T Consensus         4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l-~~l~~h~~i~~~~   64 (282)
T cd07831           4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQAL-RRLSPHPNILRLI   64 (282)
T ss_pred             EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHH-hhcCCCCCccceE
Confidence            457999999999999875  7899999986532 22223456788888 8885 99999864

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.22  Score=56.52  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          449 LESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERD  489 (591)
Q Consensus       449 l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~  489 (591)
                      |..++..++.++++|.+++......+...+.+++++..+++
T Consensus       442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e  482 (1118)
T KOG1029|consen  442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRE  482 (1118)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHH
Confidence            33344444444444444444333333333444444443333

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=96.46  E-value=0.0034  Score=64.49  Aligned_cols=61  Identities=15%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      +|.....||.|+||.||+|...  |..||||.+.... ......+..|+.++ .+.+ ||||++++
T Consensus        16 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~i~~~~   80 (296)
T cd06618          16 DLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVV-LKSHDCPYIVKCY   80 (296)
T ss_pred             hheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHH-HhccCCCchHhhh
Confidence            3455678999999999999997  8899999996432 22345677788777 6665 99999864

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.45  E-value=0.38  Score=55.87  Aligned_cols=57  Identities=18%  Similarity=0.145  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007740          365 AMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG  421 (591)
Q Consensus       365 ~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~e  421 (591)
                      +..|+..+|+|-.+-..+...+....-.-++-...+|..+.+|.++|..+|..|.+|
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE  514 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE  514 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555444433233322222222222223344444444444444444444444

; GO: 0016021 integral to membrane

>PRK10345 hypothetical protein; Provisional

Probab=96.43  E-value=0.0033  Score=62.26  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=44.3

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCC-----CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-----FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-----rHpNLV~li  590 (591)
                      ++....||+|+||.||...-.+.. +||++..........+.+|+.++ ..+     .||||++++
T Consensus         4 L~~~~~LG~G~~~~Vy~hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l-~~L~~~~~~h~nIvr~y   67 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYAHPEDAQR-CIKIVYHRGDGGDKEIRRELKYY-AHLSRRLIDWSGIPRYY   67 (210)
T ss_pred             cCCcceecCCCceEEEECCCCcCe-EEEEEeccccchHHHHHHHHHHH-HHhhccCCCCcccceee
Confidence            345678999999999962212334 69988665444567899999999 988     579999875

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=96.39  E-value=0.0028  Score=65.86  Aligned_cols=61  Identities=21%  Similarity=0.369  Sum_probs=46.8

Q ss_pred             CCCcCCccccccceeEEEEEEc---------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|...+.||+|+||.||++...         ...||+|.+.... ......|.+|+.++ .++ .|||||+++
T Consensus        13 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~iv~~~   84 (314)
T cd05099          13 RLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELM-KLIGKHKNIINLL   84 (314)
T ss_pred             HeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHH-HhccCCCCeeeEE
Confidence            3555678999999999998742         3579999986432 22345688999999 888 699999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=96.39  E-value=0.0033  Score=65.85  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=45.9

Q ss_pred             CCcCCccccccceeEEEEEE-----cCeEEEEEEccCC----CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLL-----RHMQVAIKMLHPH----SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l-----~g~~VAVK~L~~~----~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      |.....||+|+||.||++..     .|..||+|++...    .......+..|+.++ ..+ +||||+.++
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~~i~~~~   71 (332)
T cd05614           2 FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVL-EHVRQSPFLVTLH   71 (332)
T ss_pred             ceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHH-HhccCCCCcccEE
Confidence            55567899999999998875     2688999998542    122245688999999 888 599999764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PTZ00284 protein kinase; Provisional

Probab=96.37  E-value=0.002  Score=71.23  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             cCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCC
Q 007740          518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFN  585 (591)
Q Consensus       518 ~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpN  585 (591)
                      +..+++...+++|....+||+|+||.||++...  +..||||++.... .....+..|+.++ ..++|.|
T Consensus       119 ~~~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l-~~l~~~~  186 (467)
T PTZ00284        119 VLGEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFM-EKVRQAD  186 (467)
T ss_pred             ecCCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHH-HHHhhcC
Confidence            334455566788888899999999999999875  6889999995432 2234567777777 7777665

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.37  E-value=0.33  Score=56.36  Aligned_cols=16  Identities=19%  Similarity=0.235  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 007740          362 LAQAMAEAENSRREAF  377 (591)
Q Consensus       362 l~~~~~e~~~~r~e~~  377 (591)
                      ....+.|+++||-|+.
T Consensus       420 ~~rLE~dvkkLraeLq  435 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQ  435 (697)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3456666666665544

; GO: 0016021 integral to membrane

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=96.36  E-value=0.0039  Score=63.65  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CCcCCccccccceeEEEEEE-----cCeEEEEEEccCCC----CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLL-----RHMQVAIKMLHPHS----LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l-----~g~~VAVK~L~~~~----~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      |.....||.|+||.||.+..     .|..||+|.+....    ......|.+|+.++ .++ +||||+.++
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~~i~~~~   71 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVL-EHIRQSPFLVTLH   71 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHH-HhcccCCChhcee
Confidence            44556899999999999876     37899999985422    12246688999999 989 599999764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=96.34  E-value=0.0035  Score=65.50  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=45.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCC-cccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFN-LVDS  589 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpN-LV~l  589 (591)
                      +|.....||.|+||.||+|...  +..||||++...   .......+..|+.++ ..+.|++ |+.+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~~i~~~   66 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVL-ALPGKPPFLTQL   66 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhcCCCCceeee
Confidence            3555678999999999999886  578999999643   223356688999999 8887765 5543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=96.30  E-value=0.004  Score=65.05  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=44.5

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCC-CCCCcccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFI-FHFNLVDS  589 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~l-rHpNLV~l  589 (591)
                      +|.....||+|+||.||+|...  +..||||.+....   ......+..|..++ ..+ +||||+.+
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~~i~~~   66 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVL-ALSGKPPFLTQL   66 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhccCCCeEeeE
Confidence            3566678999999999999886  5799999986532   22234567788888 666 57777755

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=96.30  E-value=0.0059  Score=63.88  Aligned_cols=55  Identities=24%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             ccccc--cceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEG--GYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G--~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .||.|  +||.||.+...  |+.||||++.....  ...+.|.+|+.++ ..++|||||+++
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~-~~l~h~niv~~~   65 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLS-HFFRHPNIMTSW   65 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCcceEe
Confidence            45666  89999999874  89999999865322  2246788999999 999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=96.27  E-value=0.0034  Score=65.84  Aligned_cols=60  Identities=23%  Similarity=0.363  Sum_probs=46.2

Q ss_pred             CCcCCccccccceeEEEEEEc---------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      |.....||+|+||.||++...         +..||+|.+.... ......|.+|+.++ .++ +||||++++
T Consensus        14 ~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~iv~~~   84 (334)
T cd05100          14 LTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMM-KMIGKHKNIINLL   84 (334)
T ss_pred             eeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHH-HhhcCCCCeeeee
Confidence            444568999999999999742         2378999886532 22356799999999 999 899999764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PHA03210 serine/threonine kinase US3; Provisional

Probab=96.25  E-value=0.0017  Score=72.61  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=42.5

Q ss_pred             hcCCCcCCccccccceeEEEEEEcC---eEEEEEEcc--------------C---CCCCChhHHHHHHHHHHcCCCCCCc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLRH---MQVAIKMLH--------------P---HSLQGPSEFQQEVGAYESFIFHFNL  586 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~g---~~VAVK~L~--------------~---~~~~~~~~F~~Ev~il~s~lrHpNL  586 (591)
                      ..+|.....||+|+||.||++.++.   ..+++|.+.              .   ........|.+|+.+| .+++||||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il-~~l~HpnI  225 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILAL-GRLNHENI  225 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHH-HhCCCCCc
Confidence            3467777899999999999987641   122222110              0   1111235688999999 99999999


Q ss_pred             cccc
Q 007740          587 VDSF  590 (591)
Q Consensus       587 V~li  590 (591)
                      |+++
T Consensus       226 v~l~  229 (501)
T PHA03210        226 LKIE  229 (501)
T ss_pred             CcEe
Confidence            9874

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=96.24  E-value=0.0052  Score=62.22  Aligned_cols=59  Identities=27%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCC---CCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFI---FHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~l---rHpNLV~li  590 (591)
                      ...+.||.|+||.||+|...  |..||||.+.....  .....+.+|+.++ .++   .||||++++
T Consensus         2 ~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~h~~i~~~~   67 (287)
T cd07838           2 EELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALL-KQLESFEHPNIVRLL   67 (287)
T ss_pred             eEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHH-HHhhccCCCCcceEE
Confidence            34568999999999999986  78999999964322  1134567787766 555   699999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.24  E-value=0.002  Score=69.89  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=47.2

Q ss_pred             CCcCCccccccceeEEEEE--EcCeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGL--LRHMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~--l~g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |+....||.|-|+.|-.+.  |.|..||||+++....  .....+.+||+.| .-+.|||||+|+
T Consensus        20 YDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCM-KLVQHpNiVRLY   83 (864)
T KOG4717|consen   20 YDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCM-KLVQHPNIVRLY   83 (864)
T ss_pred             ehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHH-HHhcCcCeeeee
Confidence            4555679999999887664  5699999999976332  2345677899999 989999999986

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=96.21  E-value=0.0043  Score=64.94  Aligned_cols=60  Identities=17%  Similarity=0.158  Sum_probs=44.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCC-CCcccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFH-FNLVDS  589 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrH-pNLV~l  589 (591)
                      +|.....||+|+||.||++...  |..||||++....   ......+..|..++ ..+.| |+|+.+
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~~i~~~   66 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVL-ALQDKPPFLTQL   66 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhccCCCchhhe
Confidence            3566678999999999999875  7899999986431   22345678899888 77755 566554

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PRK11637 AmiB activator; Provisional

Probab=96.17  E-value=1.5  Score=48.16  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=10.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRREAF  377 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~  377 (591)
                      .+.+++++...+++.+.+++.
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~   64 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVR   64 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            344455555555554444444

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.14  E-value=0.00079  Score=74.43  Aligned_cols=55  Identities=20%  Similarity=0.405  Sum_probs=47.5

Q ss_pred             ccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .||.|.||.|||+.-.  +...|.|++...+....++|.-|++|| +.+.|||||+|+
T Consensus        39 ELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeIL-a~CdHP~ivkLl   95 (1187)
T KOG0579|consen   39 ELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEIL-AECDHPVIVKLL   95 (1187)
T ss_pred             hhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhh-hcCCChHHHHHH
Confidence            5799999999999887  445578988777767788999999999 999999999886

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.08  E-value=0.0048  Score=67.79  Aligned_cols=56  Identities=25%  Similarity=0.309  Sum_probs=48.2

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||+|.-|.||.+.-.  +..||||+++.......+-..+|+.+| ...+|+|||.++
T Consensus       279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm-~~~~H~NiVnfl  336 (550)
T KOG0578|consen  279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVM-RDLHHPNIVNFL  336 (550)
T ss_pred             hhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHH-HhccchHHHHHH
Confidence            47999999999999765  689999999776655566678999999 999999999875

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=96.07  E-value=0.0066  Score=60.72  Aligned_cols=60  Identities=18%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCC-----CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH-----SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~-----~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  +..+++|.+...     .......+..|+.++ .+++||||++++
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLL-SKLDHPAIVKFH   68 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHH-HhCCCCcHHHHH
Confidence            334568999999999999876  345666665431     122334677899999 999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=95.94  E-value=0.0065  Score=61.94  Aligned_cols=60  Identities=18%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             CCcCCccccccceeEEEEEEc-----CeEEEEEEccCCC----CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHS----LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~----~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      |.....||.|+||.||++...     +..||||.+....    ......|.+|+.++ .++ +||||++++
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l-~~~~~~~~i~~~~   71 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVL-EAVRRCPFLVTLH   71 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHH-HhccCCcchhhhh
Confidence            444568999999999998753     5789999985421    22345688999999 989 599998764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=95.92  E-value=0.0084  Score=61.95  Aligned_cols=55  Identities=18%  Similarity=0.053  Sum_probs=43.7

Q ss_pred             ccccccceeEEEEEEcCeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLRHMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.|+++.||++...|..||||++...  .......|.+|+.++ .+++||||++++
T Consensus         9 ~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l-~~l~h~~i~~~~   65 (314)
T cd08216           9 CFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITS-RQLQHPNILPYV   65 (314)
T ss_pred             hhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHH-HhcCCcchhhhh
Confidence            4566677778888777999999998654  233456799999999 999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]

Probab=95.88  E-value=0.1  Score=50.03  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=66.1

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +|+|++.|. ..|.-++.++....  .+.+|++|||-....      .                     ...+.++....
T Consensus         1 ~v~v~~SGG-~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~------~---------------------~~~~~~~~~~~   52 (185)
T cd01992           1 KILVAVSGG-PDSMALLHLLSELKPRLGLRLVAVHVDHGLR------P---------------------ESDEEAAFVAD   52 (185)
T ss_pred             CEEEEeCCC-HHHHHHHHHHHHHHHHcCCcEEEEEecCCCC------c---------------------hHHHHHHHHHH
Confidence            589999999 89998888886654  256899999954321      0                     00234445556


Q ss_pred             HHHHcCCceEEEEEecCC---h----------HHHHHHHHHHcCCCEEEEccCCCchhhH
Q 007740          124 ICRQMGVRAEKLDTESES---T----------EKGILELISHYGIRKLVMGAAADKHYKK  170 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~~---~----------~~~Ive~a~~~~idlIVmGs~g~~~~~R  170 (591)
                      +|...||++..+......   .          ...+.++|.+++++.|+.|.+.......
T Consensus        53 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~  112 (185)
T cd01992          53 LCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAET  112 (185)
T ss_pred             HHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHH
Confidence            788889988755111111   0          1457789999999999999997654443

This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=95.83  E-value=0.0064  Score=59.07  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=25.9

Q ss_pred             CccccccceeEEEEEEc-CeEEEEEEccCC
Q 007740          534 LKIGEGGYGSIYKGLLR-HMQVAIKMLHPH  562 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~  562 (591)
                      ..||.|+||.||+|... |..||||++...
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~   32 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTS   32 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEec
Confidence            47999999999999986 899999999654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.82  E-value=0.51  Score=47.56  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          430 KQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNY  477 (591)
Q Consensus       430 ~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~  477 (591)
                      ...+++..+|..+...+...+.++.....++.+|+..+...-..|..+
T Consensus       113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l  160 (237)
T PF00261_consen  113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL  160 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence            333344444444444444444444444455555555554444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=95.79  E-value=0.0014  Score=66.71  Aligned_cols=58  Identities=29%  Similarity=0.371  Sum_probs=48.9

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |+...+||+|+||.|||+..+  |..||||.....  ....+.+.|+.|| .++..|.+|+.+
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIM-QQC~S~yVVKYY   94 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIM-QQCKSKYVVKYY   94 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHH-HHcCCchhhhhh
Confidence            444568999999999999887  899999998544  3467899999999 999999999864

>PRK09039 hypothetical protein; Validated

Probab=95.68  E-value=1.7  Score=46.29  Aligned_cols=89  Identities=13%  Similarity=0.114  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          396 RAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQ  475 (591)
Q Consensus       396 ~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~  475 (591)
                      .-..++.++........+.+.+++....++...+..-.+...++..++.|...|+.+++.++..+...+++....+..+.
T Consensus        96 ~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~  175 (343)
T PRK09039         96 ERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA  175 (343)
T ss_pred             HHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555553322222444555555555555555555555555555666666666666655555555555555555555


Q ss_pred             HHHHHHHHH
Q 007740          476 NYKKEQDEL  484 (591)
Q Consensus       476 ~~~~~~~el  484 (591)
                      .+.++++..
T Consensus       176 ~L~~~L~~a  184 (343)
T PRK09039        176 DLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHH
Confidence            555544444

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.65  E-value=0.0031  Score=62.24  Aligned_cols=59  Identities=19%  Similarity=0.452  Sum_probs=47.9

Q ss_pred             cCCCcCCccccccceeEEEEEE--cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLL--RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l--~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ++|..-+++|+|.|..||.|.-  .+..+.||+|.+-.   .+...+|+.|| ..++ ||||++|+
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk---kkKIkREikIL-~nL~gg~NIi~L~   99 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK---KKKIKREIKIL-QNLRGGPNIIKLL   99 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH---HHHHHHHHHHH-HhccCCCCeeehh
Confidence            3444457899999999999974  47889999997632   35688999999 8887 99999885

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=95.63  E-value=0.0048  Score=63.42  Aligned_cols=60  Identities=25%  Similarity=0.383  Sum_probs=45.0

Q ss_pred             CCcCCccccccceeEEEEEEc---C---eEEEEEEccCCCCC-C-hhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR---H---MQVAIKMLHPHSLQ-G-PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~---g---~~VAVK~L~~~~~~-~-~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|.||.|||+.-.   +   ..+|||++.....+ + ...-++|+..+ .-++|||||.|.
T Consensus        26 ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~-REl~h~nvi~Lv   93 (438)
T KOG0666|consen   26 YEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALL-RELKHPNVISLV   93 (438)
T ss_pred             hhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHH-HHhcCCcchhHH
Confidence            444567999999999999543   1   36899999653221 2 34468999999 999999999874

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=95.63  E-value=0.011  Score=67.95  Aligned_cols=58  Identities=28%  Similarity=0.433  Sum_probs=46.4

Q ss_pred             cCCccccccceeEEEEEEc---------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ....||+|.||.|++|.+.         ...||||++..... .....|..|+.+| ..+ .|||+|.|+
T Consensus       300 ~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m-~~~g~H~niv~ll  368 (609)
T KOG0200|consen  300 LGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVL-KELGKHPNIVNLL  368 (609)
T ss_pred             ccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHH-HHhcCCcchhhhe
Confidence            3448999999999999874         25799999965432 4467899999999 666 799999886

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=95.51  E-value=0.059  Score=63.98  Aligned_cols=150  Identities=10%  Similarity=0.083  Sum_probs=85.8

Q ss_pred             ccCCCEEEEeecCChHHHHHHHHHHHHhcC----CCeEEEEEEeCCCC-ccccc-CCCCCCCcchHHHHHHHHHHHHHHH
Q 007740           41 SVIEDKIYVAVAKQVKESKSVLLWALQNSG----GKRICIIHVHTPAQ-MIPVM-GTKFPASSLEEEKVQAYREIERQDM  114 (591)
Q Consensus        41 ~~~~~kIlVAVD~S~~~S~~Al~wAl~~~~----g~~I~llHV~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  114 (591)
                      .+.+-+||++|-+. ++-...+.-+-...+    .-.|+++|+++... ..+.. .......     ... +........
T Consensus       455 ~~~elriL~cv~~~-~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~-----~~~-~~~~~~~~~  527 (832)
T PLN03159        455 HDAELRMLVCVHTP-RNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKS-----GRP-ALNRTQAQS  527 (832)
T ss_pred             CCCceeEEEEeccC-CcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccc-----ccc-ccccccccc
Confidence            34577999999977 666666544322221    23699999987432 11110 0000000     000 000001123


Q ss_pred             HHHHHHHHHHHHHc-CCceEEEEE--ecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhcc---CCcchHHHHhccCC
Q 007740          115 HNHLDMCLLICRQM-GVRAEKLDT--ESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMD---LKSKKAISVRQQAP  188 (591)
Q Consensus       115 ~~lL~~~~~~c~~~-gV~~e~~vi--e~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~G---s~s~Va~~V~~~Ap  188 (591)
                      +++++.|..+.... +|.+...+.  .-.++++.||.+|.+..+++||++-|....+...+-.   ....+-..|+++||
T Consensus       528 ~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~Ap  607 (832)
T PLN03159        528 DHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAP  607 (832)
T ss_pred             cHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCC
Confidence            46666666666443 577664443  3458999999999999999999999964333222100   01136789999999


Q ss_pred             CccEEEE-EcCC
Q 007740          189 ASCHIWF-ICNG  199 (591)
Q Consensus       189 ~~C~V~v-V~kg  199 (591)
                        |+|-| |.+|
T Consensus       608 --CsVgIlVDRg  617 (832)
T PLN03159        608 --CSVGILVDRG  617 (832)
T ss_pred             --CCEEEEEeCC
Confidence              76543 3555

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.48  E-value=1  Score=53.47  Aligned_cols=20  Identities=25%  Similarity=0.157  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007740          384 GKAEKDAIESIRRAKASESL  403 (591)
Q Consensus       384 ~~ae~e~~~a~~~a~~~e~~  403 (591)
                      ..||+.+..|-+++.+|+..
T Consensus      1608 ~~aE~~~~~a~q~~~eL~~~ 1627 (1758)
T KOG0994|consen 1608 AAAEKLATSATQQLGELETR 1627 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44666666666666666543

>PRK09039 hypothetical protein; Validated

Probab=95.48  E-value=3.9  Score=43.60  Aligned_cols=64  Identities=19%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          414 FEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNY  477 (591)
Q Consensus       414 ~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~  477 (591)
                      .+.+|+.++....+...+...+..++..++.|...++..+..+..+.++.+.++......|...
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444555555555555555555555555555455555554444444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.40  E-value=2.4  Score=52.31  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=10.8

Q ss_pred             EEEEeecCChHHH-HHHHHHHH
Q 007740           46 KIYVAVAKQVKES-KSVLLWAL   66 (591)
Q Consensus        46 kIlVAVD~S~~~S-~~Al~wAl   66 (591)
                      .++++--|+++.+ ..|+.|++
T Consensus        26 ~~i~G~NGsGKS~ildAi~~~l   47 (1164)
T TIGR02169        26 TVISGPNGSGKSNIGDAILFAL   47 (1164)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4555555663333 34555654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=95.36  E-value=0.01  Score=61.21  Aligned_cols=67  Identities=21%  Similarity=0.290  Sum_probs=53.8

Q ss_pred             CHHHHHHhhcCCCcCCccccccceeEEEEEE--cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          519 SFSEIEGATHNFDPSLKIGEGGYGSIYKGLL--RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       519 s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l--~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|+++-..|.     ..||+|.||.|--+..  .|..+|||++............+||+++-.+--|+||+.||
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLi  142 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLI  142 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHH
Confidence            3667777775     4799999999987754  38999999998776666788899999994455899999886

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=95.35  E-value=0.013  Score=59.13  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             CCCcccccCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCcc
Q 007740          511 MPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLV  587 (591)
Q Consensus       511 ~~~~~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV  587 (591)
                      .+.....|+-..|+..       ..||.|.||+|+|=.++  |...|||+++.... ....+|..|..+.-..-.-||||
T Consensus        54 ~~~~~~~F~~~~Lqdl-------g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IV  126 (361)
T KOG1006|consen   54 DDAHLHTFTSDNLQDL-------GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIV  126 (361)
T ss_pred             CcccccccccchHHHH-------HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHH
Confidence            3445566776666544       36999999999998886  89999999976544 44577888886652455889999


Q ss_pred             ccc
Q 007740          588 DSF  590 (591)
Q Consensus       588 ~li  590 (591)
                      +|+
T Consensus       127 kfy  129 (361)
T KOG1006|consen  127 KFY  129 (361)
T ss_pred             HHh
Confidence            875

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]

Probab=95.30  E-value=0.12  Score=49.63  Aligned_cols=96  Identities=21%  Similarity=0.314  Sum_probs=57.8

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      ||+|||-|. +.|...|....+..  .+-+++++||......         .                  ...-......
T Consensus         1 ki~va~SGG-~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~---------~------------------s~~~~~~v~~   52 (182)
T PF01171_consen    1 KILVAVSGG-KDSMALLHLLKELRRRNGIKLIAVHVDHGLRE---------E------------------SDEEAEFVEE   52 (182)
T ss_dssp             EEEEE--SS-HHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC---------C------------------HHHHHHHHHH
T ss_pred             CEEEEEcCC-HHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---------c------------------cchhHHHHHH
Confidence            799999999 89976666555544  4669999999865320         0                  0111234456


Q ss_pred             HHHHcCCceEEEEEec-----CCh---H-----HHHHHHHHHcCCCEEEEccCCCchhh
Q 007740          124 ICRQMGVRAEKLDTES-----EST---E-----KGILELISHYGIRKLVMGAAADKHYK  169 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~-----~~~---~-----~~Ive~a~~~~idlIVmGs~g~~~~~  169 (591)
                      +|...||++....+..     ...   +     ..+.++|.+++++.|++|-|...-..
T Consensus        53 ~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~E  111 (182)
T PF01171_consen   53 ICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAE  111 (182)
T ss_dssp             HHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHH
T ss_pred             HHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHH
Confidence            7889999988766652     111   1     36778999999999999999765443

The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.

>PRK00106 hypothetical protein; Provisional

Probab=95.29  E-value=2.6  Score=47.43  Aligned_cols=18  Identities=28%  Similarity=0.300  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 007740          362 LAQAMAEAENSRREAFEE  379 (591)
Q Consensus       362 l~~~~~e~~~~r~e~~~~  379 (591)
                      +++|..+++.+++++..+
T Consensus        48 leeAe~eAe~I~keA~~E   65 (535)
T PRK00106         48 RGKAERDAEHIKKTAKRE   65 (535)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555555555544443

>PRK12704 phosphodiesterase; Provisional

Probab=95.26  E-value=2.7  Score=47.31  Aligned_cols=20  Identities=30%  Similarity=0.287  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007740          360 DQLAQAMAEAENSRREAFEE  379 (591)
Q Consensus       360 ~~l~~~~~e~~~~r~e~~~~  379 (591)
                      ..++++..+++.+++++..+
T Consensus        31 ~~l~~Ae~eAe~I~keA~~e   50 (520)
T PRK12704         31 AKIKEAEEEAKRILEEAKKE   50 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666555544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.26  E-value=0.69  Score=48.67  Aligned_cols=34  Identities=21%  Similarity=0.451  Sum_probs=13.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          430 KQHDEVMEELQIALDQKSLLESQIAESDQTAKEL  463 (591)
Q Consensus       430 ~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~el  463 (591)
                      .+..++.++|..+.++...+.+++.+...+..++
T Consensus        57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l   90 (314)
T PF04111_consen   57 QEEEELLQELEELEKEREELDQELEELEEELEEL   90 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444433333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.19  E-value=0.02  Score=64.32  Aligned_cols=64  Identities=22%  Similarity=0.330  Sum_probs=50.1

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ..++|....+||+|.||.|+.+.+.  +..+|||+|..+..   ...+....|.+|+ .-+ +||-|+.|+
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~-~la~~HPFL~~L~  435 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIF-ELANRHPFLVNLF  435 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHH-HHhccCCeEeecc
Confidence            3467888889999999999999998  57899999976532   3355667787777 544 699999875

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.16  E-value=5.3  Score=42.39  Aligned_cols=11  Identities=18%  Similarity=0.042  Sum_probs=4.5

Q ss_pred             cCHHHHHHhhc
Q 007740          518 FSFSEIEGATH  528 (591)
Q Consensus       518 ~s~~el~~aT~  528 (591)
                      .+-..+.-+|.
T Consensus       349 ~tt~r~~~~t~  359 (499)
T COG4372         349 HTTRRRRPATR  359 (499)
T ss_pred             cchhhhhhhhc
Confidence            33344444443

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=95.15  E-value=0.033  Score=66.75  Aligned_cols=67  Identities=19%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             HHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEcc--CCCCCChhHHHHHHHHHHcCCCCCCcccccC
Q 007740          524 EGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLH--PHSLQGPSEFQQEVGAYESFIFHFNLVDSFI  591 (591)
Q Consensus       524 ~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~--~~~~~~~~~F~~Ev~il~s~lrHpNLV~li~  591 (591)
                      ...|-++...++||.|-||.||-+.-.  |...|+|-+.  +..........+|+.++ ..|.|||||+.++
T Consensus      1231 snV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vl-E~lnHpNlV~YyG 1301 (1509)
T KOG4645|consen 1231 SNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVL-EGLNHPNLVRYYG 1301 (1509)
T ss_pred             ccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHH-HhccCccccccCc
Confidence            344556677899999999999999765  7788998773  33344456778999999 9999999998764

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=95.10  E-value=0.0066  Score=67.47  Aligned_cols=55  Identities=20%  Similarity=0.341  Sum_probs=42.5

Q ss_pred             ccccccceeEEEEEEc--CeEEEE--EEccC--CCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLR--HMQVAI--KMLHP--HSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~--g~~VAV--K~L~~--~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +||+|.|-+||||.-.  |..||=  .++..  .+....+.|..|+..| ..|.|||||+|+
T Consensus        47 vLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lL-KsL~H~NIirfy  107 (632)
T KOG0584|consen   47 VLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLL-KSLKHPNIIRFY  107 (632)
T ss_pred             hcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHH-ccCCCCceeeee
Confidence            6999999999999875  767762  12221  2333457899999999 999999999986

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=1.5  Score=50.22  Aligned_cols=17  Identities=6%  Similarity=0.104  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007740          446 KSLLESQIAESDQTAKE  462 (591)
Q Consensus       446 ~~~l~~~~~e~~~~~~e  462 (591)
                      ...|.-+++++..++.+
T Consensus       446 letLn~k~qqls~kl~D  462 (1118)
T KOG1029|consen  446 LETLNFKLQQLSGKLQD  462 (1118)
T ss_pred             HHHHHHHHHHHhhhhhh
Confidence            34444444444444433

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=95.00  E-value=0.019  Score=57.56  Aligned_cols=62  Identities=6%  Similarity=-0.090  Sum_probs=49.1

Q ss_pred             hcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhH---------HHHHHHHHHcCCCCCCcccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSE---------FQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~---------F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .++|...+++|.||||.||.....+..+|||.+++........         |.+|+..+ .+++||||..+
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l-~rL~~~GI~~~  100 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQT-DRVRSEGLASL  100 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHH-HHHHHCCCCcc
Confidence            4678888999999999999865557789999997644333222         68999999 99999999764

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.00  E-value=4.7  Score=47.03  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007740          364 QAMAEAENSRREAFEEALRR  383 (591)
Q Consensus       364 ~~~~e~~~~r~e~~~~~~~~  383 (591)
                      ++..|.++||.|+-+-...+
T Consensus       383 e~~~e~eqLr~elaql~a~r  402 (980)
T KOG0980|consen  383 ENREEQEQLRNELAQLLASR  402 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444455555544443333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.93  E-value=2.9  Score=38.16  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007740          361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQ  440 (591)
Q Consensus       361 ~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~  440 (591)
                      ++..+..++.+++.....-......+..+.-.-...+++.+..|..|+..=.+.=..|...|+++..++.+...+..++.
T Consensus         4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~   83 (132)
T PF07926_consen    4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE   83 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666665555544445555555555566677777777777665445555555555555555555554444444


Q ss_pred             HH
Q 007740          441 IA  442 (591)
Q Consensus       441 ~~  442 (591)
                      .+
T Consensus        84 ~a   85 (132)
T PF07926_consen   84 SA   85 (132)
T ss_pred             HH
Confidence            33

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.91  E-value=0.015  Score=65.45  Aligned_cols=56  Identities=23%  Similarity=0.412  Sum_probs=43.4

Q ss_pred             CccccccceeEEEEEEcC--eEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~g--~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      -+||+|.||+||-|.-..  ..+|||-+.........=+..|+..= ++++|.|||+.+
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH-~~LrHkNIVrYL  638 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALH-STLRHKNIVRYL  638 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHH-HHHhhHhHHHHh
Confidence            469999999999998875  45789988544333334467788888 999999999864

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=94.90  E-value=3.9  Score=50.31  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 007740          447 SLLESQIAESDQTAKELEQKI  467 (591)
Q Consensus       447 ~~l~~~~~e~~~~~~ele~~~  467 (591)
                      ..+..++.+....+.+++.++
T Consensus       883 ~~l~~~~~~~~~~~~~~~~~~  903 (1179)
T TIGR02168       883 ASLEEALALLRSELEELSEEL  903 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=94.87  E-value=0.013  Score=64.35  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=46.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|.-...||+|+|.+||++.-.  +..+|||+|...   .....+-...|=.+| .+| .||.||+|+
T Consensus        74 DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l-~~L~~hPgivkLy  140 (604)
T KOG0592|consen   74 DFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEAL-TQLSGHPGIVKLY  140 (604)
T ss_pred             hcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHH-HHhhCCCCeEEEE
Confidence            3444567999999999999876  789999999652   112234456788888 888 999999986

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.87  E-value=5.7  Score=44.58  Aligned_cols=78  Identities=23%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          422 KLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQ----TAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEE  497 (591)
Q Consensus       422 k~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~----~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~  497 (591)
                      +.++++++.+++.+.+-+++...+...|+.++.....    ++.+....+.+....++-.+++..+++.+++...+-+..
T Consensus       370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~  449 (546)
T PF07888_consen  370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER  449 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666655556666555555555554432211    222333333333333344444444444444444444443


Q ss_pred             HH
Q 007740          498 LR  499 (591)
Q Consensus       498 ~~  499 (591)
                      ++
T Consensus       450 Le  451 (546)
T PF07888_consen  450 LE  451 (546)
T ss_pred             HH
Confidence            33

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=94.86  E-value=0.018  Score=63.61  Aligned_cols=61  Identities=20%  Similarity=0.422  Sum_probs=47.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--------CChhHHHHHHHHHHcCCC---CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--------QGPSEFQQEVGAYESFIF---HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--------~~~~~F~~Ev~il~s~lr---HpNLV~li  590 (591)
                      +|+....+|+|.||.|+.+...  +..|.||++.....        ....-.-.|+.|| ..+.   |+||++++
T Consensus       562 ~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIl-a~l~~~sH~NIlKlL  635 (772)
T KOG1152|consen  562 DYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQIL-ATLNKHSHENILKLL  635 (772)
T ss_pred             cceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHH-HHhhhcCccchhhhh
Confidence            3566778999999999999987  57899999854211        1123356799999 9998   99999986

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=94.85  E-value=4.2  Score=45.77  Aligned_cols=20  Identities=30%  Similarity=0.200  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007740          360 DQLAQAMAEAENSRREAFEE  379 (591)
Q Consensus       360 ~~l~~~~~e~~~~r~e~~~~  379 (591)
                      ..++++..+++.+++++..+
T Consensus        25 ~~l~~Ae~eAe~i~keA~~e   44 (514)
T TIGR03319        25 KKLGSAEELAKRIIEEAKKE   44 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666555543

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=94.85  E-value=0.019  Score=62.29  Aligned_cols=58  Identities=21%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             CcCCccccccceeEEEEE--EcCeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCcccc
Q 007740          531 DPSLKIGEGGYGSIYKGL--LRHMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~--l~g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .....||.|.||.++...  ..+..+++|.+.-....  ....-.+|+.++ ++++|||||..
T Consensus         7 e~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~li-s~~~hP~iv~y   68 (426)
T KOG0589|consen    7 EVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLL-SKLLHPNIVEY   68 (426)
T ss_pred             hhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHH-HhccCCCeeee
Confidence            334589999999987544  44789999998654322  234568999999 99999999965

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=94.80  E-value=0.031  Score=63.16  Aligned_cols=69  Identities=19%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             HHHHHHhhcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCC--C------CChhHHHHHHHHHHcCCCCCCcccc
Q 007740          520 FSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHS--L------QGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       520 ~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~--~------~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      +......+..|...+.||+|+||.||+|.+.+..+++|+.....  .      .....|.+|+.++ ..++|+|++..
T Consensus       325 ~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~i~~p  401 (535)
T PRK09605        325 WIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLL-SEARRAGVPTP  401 (535)
T ss_pred             eccccccccccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHH-HhhcccCCCee
Confidence            33333444556678899999999999999987666665442211  1      1124688999999 99999998753

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=94.66  E-value=0.037  Score=53.52  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=40.7

Q ss_pred             CccccccceeEEEEEEc-CeEEEEEEccCCCCC---------------------C-----hhHHHHHHHHHHcCCCCCCc
Q 007740          534 LKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQ---------------------G-----PSEFQQEVGAYESFIFHFNL  586 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~---------------------~-----~~~F~~Ev~il~s~lrHpNL  586 (591)
                      ..||.|+||.||+|... |..||||+++.....                     +     ...+..|...+ .+++|+++
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~i   81 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNL-KRLYEAGV   81 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHH-HHHHhCCC
Confidence            46999999999999986 999999999764211                     0     11235788889 89999887


Q ss_pred             c
Q 007740          587 V  587 (591)
Q Consensus       587 V  587 (591)
                      .
T Consensus        82 ~   82 (190)
T cd05145          82 P   82 (190)
T ss_pred             C
Confidence            4

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PHA02882 putative serine/threonine kinase; Provisional

Probab=94.63  E-value=0.049  Score=56.01  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=38.4

Q ss_pred             CCCcCCccccccceeEEEEEEcC-----eEEEEEEccCCCCCCh-----------hHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSLQGP-----------SEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g-----~~VAVK~L~~~~~~~~-----------~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|....+||+|+||.||+|...+     ..+++|+.........           ..+..+...+ ..+.|+|++.++
T Consensus        13 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~h~~i~~~~   89 (294)
T PHA02882         13 EWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNI-HNIDHLGIPKYY   89 (294)
T ss_pred             ceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHh-ccCCCCCCCcEE
Confidence            35556789999999999998763     3566665432221110           1123344456 678999998754

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=94.55  E-value=0.015  Score=58.20  Aligned_cols=60  Identities=18%  Similarity=0.122  Sum_probs=49.8

Q ss_pred             CCcCCccccccceeEEEEEE--cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLL--RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l--~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....+|+|||..||.+.-  .+..+|+|++...+..+.+.-.+|++.- .++.|||+++++
T Consensus        23 yri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~-rkf~s~~vl~l~   84 (302)
T KOG2345|consen   23 YRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNH-RKFNSPNVLRLV   84 (302)
T ss_pred             EEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHH-HhhCCcchHHHH
Confidence            34446799999999997763  3789999999877767778889999998 999999998864

>PRK12704 phosphodiesterase; Provisional

Probab=94.38  E-value=5.3  Score=45.08  Aligned_cols=8  Identities=38%  Similarity=0.538  Sum_probs=4.3

Q ss_pred             CCcccccc
Q 007740          533 SLKIGEGG  540 (591)
Q Consensus       533 ~~~iG~G~  540 (591)
                      +.+||+.|
T Consensus       223 griigreG  230 (520)
T PRK12704        223 GRIIGREG  230 (520)
T ss_pred             cceeCCCc
Confidence            35566554

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=94.38  E-value=4.6  Score=45.45  Aligned_cols=8  Identities=38%  Similarity=0.538  Sum_probs=4.6

Q ss_pred             CCcccccc
Q 007740          533 SLKIGEGG  540 (591)
Q Consensus       533 ~~~iG~G~  540 (591)
                      +.+||+.|
T Consensus       217 griigreG  224 (514)
T TIGR03319       217 GRIIGREG  224 (514)
T ss_pred             ccccCCCc
Confidence            45666655

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.37  E-value=4.2  Score=51.31  Aligned_cols=17  Identities=18%  Similarity=0.333  Sum_probs=11.5

Q ss_pred             ccccCHHHHHHhhcCCC
Q 007740          515 FSDFSFSEIEGATHNFD  531 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~  531 (591)
                      ...++.++|.....+|.
T Consensus       432 ~~~~SdEeLe~~LenF~  448 (1486)
T PRK04863        432 LPDLTADNAEDWLEEFQ  448 (1486)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            34677777777666664

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.28  E-value=6.7  Score=39.51  Aligned_cols=88  Identities=26%  Similarity=0.294  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          381 LRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTA  460 (591)
Q Consensus       381 ~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~  460 (591)
                      .+....+..+-.|...+...+..|.+-.++-..++..|.+.....+........+..+|..+......++.....+..+.
T Consensus        92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re  171 (237)
T PF00261_consen   92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE  171 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence            44455667777777888888888777777777777777777666666666666666666666555544444444444333


Q ss_pred             HHHHHHHH
Q 007740          461 KELEQKII  468 (591)
Q Consensus       461 ~ele~~~~  468 (591)
                      ..++.++.
T Consensus       172 ~~~e~~i~  179 (237)
T PF00261_consen  172 DEYEEKIR  179 (237)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.26  E-value=4.6  Score=37.51  Aligned_cols=46  Identities=26%  Similarity=0.424  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          444 DQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERD  489 (591)
Q Consensus       444 ~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~  489 (591)
                      ++...|+.++..+...+.+...++..+......+.+....|..+++
T Consensus        80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~  125 (143)
T PF12718_consen   80 RRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD  125 (143)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence            3333444444444444444444444443333333344444433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.22  E-value=1.8  Score=42.53  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=16.8

Q ss_pred             ccccCHHHHHHhhcCCCcCCcccc
Q 007740          515 FSDFSFSEIEGATHNFDPSLKIGE  538 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~~~iG~  538 (591)
                      ...|.+.++..-|-+..+..+-|.
T Consensus       210 ~e~~~i~dl~~et~~l~p~die~~  233 (290)
T COG4026         210 PEEELISDLVKETLNLAPKDIEGQ  233 (290)
T ss_pred             hHHHHHHHHHHHHhccCchhccce
Confidence            457788888887877776655443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.17  E-value=7.1  Score=39.34  Aligned_cols=55  Identities=27%  Similarity=0.299  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          432 HDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQM  486 (591)
Q Consensus       432 ~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~  486 (591)
                      ...+..+++.++++...|+.++.+....+..++.++......+..+.+...+.+.
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~  145 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA  145 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666677777777777777666666666666666666655555544443

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=94.15  E-value=0.0098  Score=66.61  Aligned_cols=63  Identities=27%  Similarity=0.403  Sum_probs=51.3

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....+|.|.||.|||++-.  |...|||++.-.......-.++|+-++ .-++|||||.++
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~-~dc~h~nivay~   78 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGML-RDCRHPNIVAYF   78 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeee-ecCCCcChHHHH
Confidence            345666678999999999999865  789999998765555566678999999 999999999764

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=94.05  E-value=7.7  Score=39.36  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          364 QAMAEAENSRREAFEEALRRGKAE  387 (591)
Q Consensus       364 ~~~~e~~~~r~e~~~~~~~~~~ae  387 (591)
                      ....|.++||+|-.+---++..+|
T Consensus       282 rrqieterlrqeeeelnikk~e~~  305 (445)
T KOG2891|consen  282 RRQIETERLRQEEEELNIKKAEAC  305 (445)
T ss_pred             HhhhhHHHHhhhHhhhhhhHHHhh
Confidence            455677788877665544555555

>PRK00106 hypothetical protein; Provisional

Probab=94.00  E-value=6.2  Score=44.47  Aligned_cols=7  Identities=43%  Similarity=0.596  Sum_probs=3.5

Q ss_pred             Ccccccc
Q 007740          534 LKIGEGG  540 (591)
Q Consensus       534 ~~iG~G~  540 (591)
                      .+||+-|
T Consensus       239 riIGreG  245 (535)
T PRK00106        239 RIIGREG  245 (535)
T ss_pred             ceeCCCc
Confidence            4555544

>PRK02224 chromosome segregation protein; Provisional

Probab=93.96  E-value=7.9  Score=46.53  Aligned_cols=7  Identities=0%  Similarity=-0.552  Sum_probs=2.6

Q ss_pred             HHHHHhc
Q 007740           63 LWALQNS   69 (591)
Q Consensus        63 ~wAl~~~   69 (591)
                      .|-..++
T Consensus       116 ~~i~~ll  122 (880)
T PRK02224        116 EEVTELL  122 (880)
T ss_pred             HHHHHHH
Confidence            3433333

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=93.92  E-value=0.031  Score=57.27  Aligned_cols=60  Identities=18%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.-...||.|+||.|......  |.-+|+|+|.....-.   .+...+|-.+| ..+.||.||+|.
T Consensus        46 fe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL-~~v~~PFlv~l~  110 (355)
T KOG0616|consen   46 FERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVL-KAVSHPFLVKLY  110 (355)
T ss_pred             hhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHH-hhccCceeEEEE
Confidence            444568999999999988876  7889999996643222   34467899999 999999999875

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.73  E-value=0.0046  Score=61.88  Aligned_cols=56  Identities=27%  Similarity=0.466  Sum_probs=42.6

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCC-CCC-hhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQG-PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~-~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||.|.||.||++...  |..||+|+.--.. ..+ ...-.+|+.+| ..+.|+|+|.||
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL-~~lkHenv~nli   82 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKIL-QLLKHENVVNLI   82 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHH-HHhcchhHHHHH
Confidence            47999999999999886  6789987663221 111 23347899999 999999999875

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=93.72  E-value=0.0024  Score=63.62  Aligned_cols=56  Identities=16%  Similarity=0.306  Sum_probs=44.7

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccC--CCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHP--HSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~--~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||+|.|..||++...  |+.+|+|+++.  .+..+.+...+|+.|- ..+.|||||+|.
T Consensus        17 e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC-~~LqHP~IvrL~   76 (355)
T KOG0033|consen   17 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC-RKLQHPNIVRLH   76 (355)
T ss_pred             HHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHH-HhcCCCcEeehh
Confidence            47999999999998765  77888887754  2334567788999998 899999999874

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.62  E-value=9.6  Score=45.68  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 007740          362 LAQAMAEAENSRREAFEE  379 (591)
Q Consensus       362 l~~~~~e~~~~r~e~~~~  379 (591)
                      +++...|+++||.+++..
T Consensus       406 lKd~~~EIerLK~dl~Aa  423 (1041)
T KOG0243|consen  406 LKDLYEEIERLKRDLAAA  423 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            678999999999998744

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.38  E-value=13  Score=39.67  Aligned_cols=17  Identities=24%  Similarity=0.106  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007740          361 QLAQAMAEAENSRREAF  377 (591)
Q Consensus       361 ~l~~~~~e~~~~r~e~~  377 (591)
                      +|+++...++.+|-|+.
T Consensus        75 qlddi~~qlr~~rtel~   91 (499)
T COG4372          75 QLDDIRPQLRALRTELG   91 (499)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            44555555555555554

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.38  E-value=12  Score=39.49  Aligned_cols=7  Identities=29%  Similarity=0.572  Sum_probs=2.8

Q ss_pred             cCHHHHH
Q 007740          518 FSFSEIE  524 (591)
Q Consensus       518 ~s~~el~  524 (591)
                      ++..|+.
T Consensus       273 ~t~~Ev~  279 (325)
T PF08317_consen  273 WTRSEVK  279 (325)
T ss_pred             CCHHHHH
Confidence            3444443

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=93.31  E-value=0.051  Score=58.01  Aligned_cols=56  Identities=27%  Similarity=0.319  Sum_probs=46.1

Q ss_pred             CccccccceeEEEEEEcC--eEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~g--~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|.-|+||.+.++|  ...|+|+++....   ......+.|-+|| +.+.||-|++|+
T Consensus        83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL-~~lDHPFlPTLY  143 (459)
T KOG0610|consen   83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREIL-SLLDHPFLPTLY  143 (459)
T ss_pred             HHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHH-HhcCCCccchhh
Confidence            479999999999999985  7899999976433   2245567788899 999999999886

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.24  E-value=17  Score=40.83  Aligned_cols=8  Identities=38%  Similarity=0.463  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 007740          361 QLAQAMAE  368 (591)
Q Consensus       361 ~l~~~~~e  368 (591)
                      +++++..|
T Consensus       144 qlE~~qkE  151 (546)
T PF07888_consen  144 QLEECQKE  151 (546)
T ss_pred             HHHHHHHH
Confidence            33333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=93.19  E-value=17  Score=43.80  Aligned_cols=18  Identities=6%  Similarity=0.268  Sum_probs=12.6

Q ss_pred             EEEEccCCCchhhHHhcc
Q 007740          157 KLVMGAAADKHYKKKMMD  174 (591)
Q Consensus       157 lIVmGs~g~~~~~R~l~G  174 (591)
                      -|.|-.+|.++|.--++|
T Consensus       113 sItL~N~G~~Afk~eiyG  130 (1074)
T KOG0250|consen  113 SITLSNSGLDAFKPEIYG  130 (1074)
T ss_pred             EEEEecCCcccCChhhcC
Confidence            456677888888766665

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.18  E-value=13  Score=46.30  Aligned_cols=9  Identities=22%  Similarity=0.431  Sum_probs=3.9

Q ss_pred             cccccceeE
Q 007740          536 IGEGGYGSI  544 (591)
Q Consensus       536 iG~G~~G~V  544 (591)
                      |..||-|..
T Consensus      1029 L~~GG~a~L 1037 (1163)
T COG1196        1029 LFGGGTAEL 1037 (1163)
T ss_pred             hCCCCeeEE
Confidence            334444443

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=93.11  E-value=0.68  Score=44.09  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=63.4

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhcC----CCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNSG----GKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~~----g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      +|+|++-|. ..|-.++.++.....    +-.|+++||......        ..                   .......
T Consensus         1 ~v~v~~SGG-~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~--------~~-------------------~~~~~~~   52 (185)
T cd01993           1 RILVALSGG-KDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPG--------YR-------------------DESLEVV   52 (185)
T ss_pred             CEEEEeCCC-HHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCC--------Cc-------------------HHHHHHH
Confidence            589999999 889888877766543    558999999754310        00                   0112233


Q ss_pred             HHHHHHcCCceEEEEEec---------------------CChHHHHHHHHHHcCCCEEEEccCCCchhh
Q 007740          122 LLICRQMGVRAEKLDTES---------------------ESTEKGILELISHYGIRKLVMGAAADKHYK  169 (591)
Q Consensus       122 ~~~c~~~gV~~e~~vie~---------------------~~~~~~Ive~a~~~~idlIVmGs~g~~~~~  169 (591)
                      ..+|...||++..+.+..                     .-....+.++|.+++++.|+.|.+...-..
T Consensus        53 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e  121 (185)
T cd01993          53 ERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE  121 (185)
T ss_pred             HHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence            456777788877654431                     001246678899999999999999764443

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=93.08  E-value=0.079  Score=59.35  Aligned_cols=49  Identities=20%  Similarity=0.250  Sum_probs=37.9

Q ss_pred             cCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC
Q 007740          532 PSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF  582 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr  582 (591)
                      -...||+|.||.|.|+.-.  +..||||++...... ..+=+.|+.|| ..|+
T Consensus       190 V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f-~~Q~~~Ei~iL-~~ln  240 (586)
T KOG0667|consen  190 VLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRF-LRQAQIEIRIL-ELLN  240 (586)
T ss_pred             EEEEecccccceeEEEEecCCCcEEEEEeeccChHH-HHHHHHHHHHH-HHHh
Confidence            3568999999999999876  689999999654322 23446789999 8887

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=93.04  E-value=0.042  Score=63.13  Aligned_cols=58  Identities=24%  Similarity=0.349  Sum_probs=44.1

Q ss_pred             CCcCCccccccce-eEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYG-SIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G-~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |+...++|.|.-| .||+|.+.|+.||||+|-...   ..--++||..|...=.|||||+++
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~---~~~A~rEi~lL~eSD~H~NviRyy  569 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEF---FDFAQREIQLLQESDEHPNVIRYY  569 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCCceehHHHHhhHh---HHHHHHHHHHHHhccCCCceEEEE
Confidence            5666678888877 469999999999999984321   123378999884556899999875

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=93.01  E-value=0.13  Score=49.86  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=40.3

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccCCCC--C--------------------ChhHHHHHHHHHHcCCCCCCc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSL--Q--------------------GPSEFQQEVGAYESFIFHFNL  586 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~--~--------------------~~~~F~~Ev~il~s~lrHpNL  586 (591)
                      +...+.||.|+||.||++... |..||||++.....  .                    ....+..|..++ .++.|+|+
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL-KALYEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH-HHHHHcCC
Confidence            444578999999999999886 89999998754220  0                    012356788888 77877753

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.94  E-value=16  Score=43.39  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 007740          410 RRKEFEEALANGKLELE  426 (591)
Q Consensus       410 ~rk~~E~~l~~ek~~~~  426 (591)
                      +.++++..+...++.++
T Consensus       788 rlkdl~keik~~k~~~e  804 (1174)
T KOG0933|consen  788 RLKDLEKEIKTAKQRAE  804 (1174)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444433333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=92.90  E-value=16  Score=43.98  Aligned_cols=10  Identities=30%  Similarity=0.461  Sum_probs=5.7

Q ss_pred             HHHHHhhcCC
Q 007740          521 SEIEGATHNF  530 (591)
Q Consensus       521 ~el~~aT~~F  530 (591)
                      ..|...+..|
T Consensus       482 ~~I~r~~~~f  491 (1074)
T KOG0250|consen  482 RAIERRKRRF  491 (1074)
T ss_pred             HHHHHHHhcC
Confidence            4555556666

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.79  E-value=11  Score=38.28  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          444 DQKSLLESQIAESDQTAKELEQKIISAVELLQNYK  478 (591)
Q Consensus       444 ~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~  478 (591)
                      ..+..|+.++.+....+..++............++
T Consensus        75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq  109 (246)
T PF00769_consen   75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQ  109 (246)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555554443333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.59  E-value=26  Score=41.18  Aligned_cols=20  Identities=10%  Similarity=0.360  Sum_probs=8.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHH
Q 007740          426 ERMKKQHDEVMEELQIALDQ  445 (591)
Q Consensus       426 ~~~k~e~~~~~~el~~~~~~  445 (591)
                      .++..++..+.++..++.+|
T Consensus       434 t~l~~~h~~lL~K~~di~kQ  453 (980)
T KOG0980|consen  434 TELRQEHADLLRKYDDIQKQ  453 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444443333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=92.55  E-value=17  Score=46.83  Aligned_cols=57  Identities=16%  Similarity=0.280  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHH-----HHcCCceEEEEEecCChHH---------HHHHHHHHcCCCEEEEccCCCchhhHH
Q 007740          111 RQDMHNHLDMCLLIC-----RQMGVRAEKLDTESESTEK---------GILELISHYGIRKLVMGAAADKHYKKK  171 (591)
Q Consensus       111 ~~~~~~lL~~~~~~c-----~~~gV~~e~~vie~~~~~~---------~Ive~a~~~~idlIVmGs~g~~~~~R~  171 (591)
                      -++.+.+|....-..     .+.||....+- -|-|...         ||+-+.++.   .+|-|+.-.+.+.++
T Consensus       475 nEkLQqfFnh~mFvlEqeeY~~EgIew~fid-fG~Dlq~~idLIEkp~Gi~slLdEE---c~~PkAtd~tf~~kL  545 (1930)
T KOG0161|consen  475 NEKLQQFFNHHMFVLEQEEYQREGIEWDFID-FGLDLQPTIDLIEKPMGILSLLDEE---CVVPKATDKTFLEKL  545 (1930)
T ss_pred             HHHHHhhhcchhhhhhHHHHHHhCCceeeec-cccchhhhHHHHhchhhHHHHHHHH---HhcCCCccchHHHHH
Confidence            345555665543332     24477754332 2323222         555555443   456666655555444

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional

Probab=92.49  E-value=1.5  Score=44.77  Aligned_cols=95  Identities=16%  Similarity=0.249  Sum_probs=62.8

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--C--CCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--G--GKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD  119 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~--g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~  119 (591)
                      +++|+||+-|. ..|...|.|+....  .  +-+|+.|||.....      + ..                 +   +.  
T Consensus        29 ~~kilVa~SGG-~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~------~-~~-----------------~---~~--   78 (258)
T PRK10696         29 GDRVMVCLSGG-KDSYTLLDILLNLQKRAPINFELVAVNLDQKQP------G-FP-----------------E---HV--   78 (258)
T ss_pred             CCEEEEEecCC-HHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCC------C-CC-----------------H---HH--
Confidence            56999999999 88987777765533  1  34788888753211      1 00                 0   01  


Q ss_pred             HHHHHHHHcCCceEEEEEec-----------CCh--------HHHHHHHHHHcCCCEEEEccCCCchhh
Q 007740          120 MCLLICRQMGVRAEKLDTES-----------EST--------EKGILELISHYGIRKLVMGAAADKHYK  169 (591)
Q Consensus       120 ~~~~~c~~~gV~~e~~vie~-----------~~~--------~~~Ive~a~~~~idlIVmGs~g~~~~~  169 (591)
                       ...+|...||++..+.+..           ..+        ...+.++|.++++|.|++|.|......
T Consensus        79 -~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~E  146 (258)
T PRK10696         79 -LPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILE  146 (258)
T ss_pred             -HHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHH
Confidence             2567999999987554321           011        135678899999999999999866444

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=92.36  E-value=0.13  Score=59.57  Aligned_cols=70  Identities=26%  Similarity=0.430  Sum_probs=52.0

Q ss_pred             HHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          520 FSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       520 ~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +..+-..++-|.....||.|.||.||++.-.  |+.+|||+++.+... .++...|-+||.....|||++.++
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~-deEiE~eynil~~~~~hpnv~~fy   82 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE-EEEIELEYNMLKKYSHHPNVATFY   82 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc-cHHHHHHHHHHHhccCCCCcceEE
Confidence            3334445556666678999999999998775  789999999876543 355667777774466999999875

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=92.28  E-value=24  Score=42.73  Aligned_cols=39  Identities=18%  Similarity=0.047  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKA  399 (591)
Q Consensus       361 ~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~  399 (591)
                      ...++..++.....|+.+.+.|-..|..++-+|+++|+.
T Consensus      1416 ~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~ 1454 (1758)
T KOG0994|consen 1416 MAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQR 1454 (1758)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            334555555555566666666666666666666555544

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.28  E-value=7.1  Score=39.19  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          416 EALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAV  471 (591)
Q Consensus       416 ~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~  471 (591)
                      ..|...+.+++.+..|+....++|+++.+.+..++.-+.++.......+..+....
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~   87 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY   87 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555667776666666666666666555555444443333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.22  E-value=0.053  Score=54.96  Aligned_cols=61  Identities=21%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +..+++-||-|.||.||.-+-+  |+.||.|++...  +...-+.|-+|+..| +..+|.|++.++
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmL-cfFkHdNVLSaL  118 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKML-SSFRHDNVLSLL  118 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHH-HhhccccHHHHH
Confidence            3567889999999999988775  899999988431  222346788999999 999999987543

>cd05119 RIO RIO kinase family, catalytic domain

Probab=92.22  E-value=0.2  Score=47.66  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=25.7

Q ss_pred             CccccccceeEEEEEEc-CeEEEEEEccCC
Q 007740          534 LKIGEGGYGSIYKGLLR-HMQVAIKMLHPH  562 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~  562 (591)
                      +.||+|+||.||++... |..||||++.+.
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~   32 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTG   32 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecC
Confidence            57999999999999987 899999998653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.17  E-value=20  Score=38.96  Aligned_cols=17  Identities=18%  Similarity=0.153  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007740          362 LAQAMAEAENSRREAFE  378 (591)
Q Consensus       362 l~~~~~e~~~~r~e~~~  378 (591)
                      |++.+.|+..+..++.+
T Consensus        68 lk~~e~~i~~~~~ql~~   84 (420)
T COG4942          68 LKSLETEIASLEAQLIE   84 (420)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.09  E-value=21  Score=38.89  Aligned_cols=40  Identities=23%  Similarity=0.150  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKA  399 (591)
Q Consensus       360 ~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~  399 (591)
                      ++|++...|++.+.+++.+......+.+.++-+.......
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~   77 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS   77 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888888777777766666666666555554444333

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=92.02  E-value=0.11  Score=58.66  Aligned_cols=59  Identities=20%  Similarity=0.293  Sum_probs=47.1

Q ss_pred             CcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||.|+-|.|-.|+..  |+.+|||++.....   .......+|+.|| .-|.|||++.|+
T Consensus        15 kLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviM-kLi~HpnVl~Ly   78 (786)
T KOG0588|consen   15 KLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIM-KLIEHPNVLRLY   78 (786)
T ss_pred             eccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHH-HHhcCCCeeeee
Confidence            34567999999999988876  89999999965422   2234567999999 889999999886

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=91.93  E-value=0.3  Score=49.36  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             HHHHhhcCCCcCCcc--ccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          522 EIEGATHNFDPSLKI--GEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       522 el~~aT~~F~~~~~i--G~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++..-.++|...+.+  |.|+||.||++...  |..+|+|.+.......   +..++..+ . ..|||+++++
T Consensus         8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---~e~~~~~~-~-~~h~~iv~~~   75 (267)
T PHA03390          8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA---IEPMVHQL-M-KDNPNFIKLY   75 (267)
T ss_pred             HHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch---hhHHHHHH-h-hcCCCEEEEE
Confidence            334444555554555  99999999999875  6889999985432111   11122222 1 2799999764

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=91.65  E-value=10  Score=38.57  Aligned_cols=103  Identities=15%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHH
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELE-------RMK  429 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~-------~~k  429 (591)
                      ..-.++++++.-+++|++|-.+.-....                            -+|++|.+.|+..+       .++
T Consensus        15 ~aLqKIqelE~QldkLkKE~qQrQfQle----------------------------SlEAaLqKQKqK~e~ek~e~s~Lk   66 (307)
T PF10481_consen   15 RALQKIQELEQQLDKLKKERQQRQFQLE----------------------------SLEAALQKQKQKVEEEKNEYSALK   66 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHH----------------------------HHHHHHHHHHHHHHHHhhhhhhhh
Confidence            4566777777777888877665422221                            22333333333333       333


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          430 KQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQME  487 (591)
Q Consensus       430 ~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~  487 (591)
                      ++..-+.+....+.+.+..+...++....++.-+|.++......+..+.+++..+..+
T Consensus        67 REnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE  124 (307)
T PF10481_consen   67 RENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE  124 (307)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444555555556666666667777776666665555554444333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.59  E-value=14  Score=46.77  Aligned_cols=124  Identities=19%  Similarity=0.232  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHh
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG-----KLELERMKKQ  431 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~e-----k~~~~~~k~e  431 (591)
                      .+..+|++-+..++.....+++.   ..+++.+...+.+....+...+..-.+..++.+..|...     -..-++....
T Consensus       985 ~~~~~Le~~Le~iE~~~~~areq---l~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~ 1061 (1486)
T PRK04863        985 DLNEKLRQRLEQAEQERTRAREQ---LRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARAR 1061 (1486)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHh
Confidence            45555555555555555555554   334455555555555556555554444445555555443     1122334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          432 HDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDE  483 (591)
Q Consensus       432 ~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~e  483 (591)
                      .+++..+|.....+...|++++.-....+..+..++......+..++.....
T Consensus      1062 ~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~ 1113 (1486)
T PRK04863       1062 RDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVN 1113 (1486)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778888888888888888888888888888887777776655555544433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.59  E-value=30  Score=44.75  Aligned_cols=12  Identities=8%  Similarity=-0.011  Sum_probs=4.8

Q ss_pred             ccCCCccEEEEE
Q 007740          185 QQAPASCHIWFI  196 (591)
Q Consensus       185 ~~Ap~~C~V~vV  196 (591)
                      ..-|+|...+|.
T Consensus       656 ~T~phFvRCiIP  667 (1930)
T KOG0161|consen  656 STHPHFVRCIIP  667 (1930)
T ss_pred             cCCCceeEEecc
Confidence            333444444433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.40  E-value=18  Score=36.74  Aligned_cols=13  Identities=23%  Similarity=0.049  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHH
Q 007740          388 KDAIESIRRAKAS  400 (591)
Q Consensus       388 ~e~~~a~~~a~~~  400 (591)
                      .++..+..+|..|
T Consensus        26 ~~L~e~e~~a~~L   38 (246)
T PF00769_consen   26 EALEESEETAEEL   38 (246)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333444444444

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]

Probab=91.37  E-value=1.6  Score=45.06  Aligned_cols=99  Identities=17%  Similarity=0.227  Sum_probs=62.3

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +.+|+|||-|. +.|..+|....+....-.+.++||.+....     .   .                   .........
T Consensus        21 ~~~ilVavSGG-kDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~-----~---~-------------------~~~~~~~~~   72 (298)
T COG0037          21 EYKILVAVSGG-KDSLALLHLLKELGRRIEVEAVHVDHGLRG-----Y---S-------------------DQEAELVEK   72 (298)
T ss_pred             CCeEEEEeCCC-hHHHHHHHHHHHhccCceEEEEEecCCCCC-----c---c-------------------chHHHHHHH
Confidence            57999999999 899877765544432268999999865421     0   0                   112223345


Q ss_pred             HHHHcCCceEEEEEecCC---------h--------HHHHHHHHHHcCCCEEEEccCCCchhhH
Q 007740          124 ICRQMGVRAEKLDTESES---------T--------EKGILELISHYGIRKLVMGAAADKHYKK  170 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~~---------~--------~~~Ive~a~~~~idlIVmGs~g~~~~~R  170 (591)
                      +|...|++....-+...-         +        ...+-++|.++|+|.|+.|-|...-..-
T Consensus        73 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et  136 (298)
T COG0037          73 LCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAET  136 (298)
T ss_pred             HHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHH
Confidence            677777643322222111         1        1246678999999999999998765543

>TIGR00268 conserved hypothetical protein TIGR00268

Probab=91.25  E-value=1.5  Score=44.62  Aligned_cols=91  Identities=19%  Similarity=0.280  Sum_probs=59.5

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      .++|+||+-|- ..|--++.+|.+.  |..|+.||+..+..         +.                    .-++.+..
T Consensus        12 ~~~vlVa~SGG-vDSs~ll~la~~~--g~~v~av~~~~~~~---------~~--------------------~e~~~a~~   59 (252)
T TIGR00268        12 FKKVLIAYSGG-VDSSLLAAVCSDA--GTEVLAITVVSPSI---------SP--------------------RELEDAII   59 (252)
T ss_pred             cCCEEEEecCc-HHHHHHHHHHHHh--CCCEEEEEecCCCC---------CH--------------------HHHHHHHH
Confidence            36899999999 7888888887664  67899999964321         10                    01223345


Q ss_pred             HHHHcCCceEEEEEec-----------------CChHHHHHHHHHHcCCCEEEEccCCCc
Q 007740          124 ICRQMGVRAEKLDTES-----------------ESTEKGILELISHYGIRKLVMGAAADK  166 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~-----------------~~~~~~Ive~a~~~~idlIVmGs~g~~  166 (591)
                      +|...||+...+-+..                 ......+.++|.+++++.|+.|++...
T Consensus        60 ~a~~lgi~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD  119 (252)
T TIGR00268        60 IAKEIGVNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADD  119 (252)
T ss_pred             HHHHcCCCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence            6777777765433211                 112335667888999999999987643

The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.19  E-value=22  Score=37.41  Aligned_cols=8  Identities=63%  Similarity=1.120  Sum_probs=3.4

Q ss_pred             ccCHHHHH
Q 007740          517 DFSFSEIE  524 (591)
Q Consensus       517 ~~s~~el~  524 (591)
                      .|+..|+.
T Consensus       267 ~~t~~Ei~  274 (312)
T smart00787      267 GFTFKEIE  274 (312)
T ss_pred             CCCHHHHH
Confidence            44444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=91.08  E-value=0.094  Score=54.44  Aligned_cols=61  Identities=21%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhH---HHHHHHHHHcCCCCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSE---FQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~---F~~Ev~il~s~lrHpNLV~l  589 (591)
                      ++|+-..+||+|.||.|..+.-.  |..+|||+|.....-...+   -..|-++| ...+||-|..|
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL-~~~~HPFLt~L  233 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVL-QNCRHPFLTSL  233 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHH-HhccCcHHHHh
Confidence            45777789999999999988775  8899999997654333333   36788999 99999988654

>PRK02224 chromosome segregation protein; Provisional

Probab=91.04  E-value=32  Score=41.34  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=9.4

Q ss_pred             EEEEeecCChHHHH-HHHHHHH
Q 007740           46 KIYVAVAKQVKESK-SVLLWAL   66 (591)
Q Consensus        46 kIlVAVD~S~~~S~-~Al~wAl   66 (591)
                      .++++--|+++.+- .|+.||+
T Consensus        26 ~~i~G~Ng~GKStil~ai~~~l   47 (880)
T PRK02224         26 TVIHGVNGSGKSSLLEACFFAL   47 (880)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            45555555533332 3445543

>PRK03918 chromosome segregation protein; Provisional

Probab=91.03  E-value=36  Score=40.83  Aligned_cols=7  Identities=29%  Similarity=0.771  Sum_probs=3.0

Q ss_pred             EEEccCC
Q 007740          158 LVMGAAA  164 (591)
Q Consensus       158 IVmGs~g  164 (591)
                      +|+|..|
T Consensus        27 ~i~G~nG   33 (880)
T PRK03918         27 LIIGQNG   33 (880)
T ss_pred             EEEcCCC
Confidence            3444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.94  E-value=29  Score=42.14  Aligned_cols=11  Identities=27%  Similarity=0.256  Sum_probs=6.0

Q ss_pred             eeeeecCCCCC
Q 007740          201 LIYTREGSLDG  211 (591)
Q Consensus       201 ~~~~R~a~~~~  211 (591)
                      ++.+|.|.+..
T Consensus       185 ~~ItRtA~~~N  195 (1293)
T KOG0996|consen  185 FTITRTAFRDN  195 (1293)
T ss_pred             eEEEehhhhCC
Confidence            34566665543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.89  E-value=13  Score=34.40  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          456 SDQTAKELEQKIISAVELLQNYKKEQD  482 (591)
Q Consensus       456 ~~~~~~ele~~~~~~~~~l~~~~~~~~  482 (591)
                      +.+++.-||+++..+...|.....+++
T Consensus        78 l~rriq~LEeele~ae~~L~e~~ekl~  104 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEKKLKETTEKLR  104 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK12342 hypothetical protein; Provisional

Probab=90.84  E-value=1.4  Score=45.01  Aligned_cols=117  Identities=14%  Similarity=0.062  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHhc-CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE
Q 007740           56 KESKSVLLWALQNS-GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEK  134 (591)
Q Consensus        56 ~~S~~Al~wAl~~~-~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~~gV~~e~  134 (591)
                      ..-.+||+.|+.+- .|.+|++|++=++.                            ....+++..+..+-...+|.+..
T Consensus        35 p~D~~AlE~AlrLk~~g~~Vtvls~Gp~~----------------------------a~~~~l~r~alamGaD~avli~d   86 (254)
T PRK12342         35 QFDLNAIEAASQLATDGDEIAALTVGGSL----------------------------LQNSKVRKDVLSRGPHSLYLVQD   86 (254)
T ss_pred             hhhHHHHHHHHHHhhcCCEEEEEEeCCCh----------------------------HhHHHHHHHHHHcCCCEEEEEec
Confidence            56778999998876 57899999885442                            11112334443333333333322


Q ss_pred             EEEecCCh---HHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEE----EEEcCCceeeeecC
Q 007740          135 LDTESEST---EKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHI----WFICNGNLIYTREG  207 (591)
Q Consensus       135 ~vie~~~~---~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V----~vV~kgk~~~~R~a  207 (591)
                      -.+.+.|+   +..|..++++.++|+|+.|...-.+....       |+-.+...---+|--    +-+..|++..+|+-
T Consensus        87 ~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~tgq-------vg~~lA~~Lg~P~vt~v~~~~~~~~~~~v~r~~  159 (254)
T PRK12342         87 AQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQ-------VGLLLGELLQLPVINAVSKIQRQGNKLIVERTL  159 (254)
T ss_pred             CccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCCCC-------HHHHHHHHhCCCcEeeEEEEEEeCCEEEEEEEc
Confidence            22234566   78999999999999999997753332211       222222222212322    33457787777864

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=90.73  E-value=0.32  Score=43.30  Aligned_cols=52  Identities=10%  Similarity=0.059  Sum_probs=41.3

Q ss_pred             CccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCC--Cccc
Q 007740          534 LKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHF--NLVD  588 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHp--NLV~  588 (591)
                      ..||.|.++.||++...+..++||.......  ...|..|+.++ ..++|.  ++.+
T Consensus         4 ~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~--~~~~~~e~~~~-~~l~~~~~~~p~   57 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKDEDYVLKINPSREK--GADREREVAIL-QLLARKGLPVPK   57 (155)
T ss_pred             eecccccccceEEEEecCCeEEEEecCCCCc--hhHHHHHHHHH-HHHHHcCCCCCe
Confidence            4689999999999999888999999865432  45789999998 888764  4444

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=90.43  E-value=18  Score=35.11  Aligned_cols=133  Identities=18%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVM  436 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~  436 (591)
                      .++.+++-+..|+++....+..-..+-..+++.+....+..+-+++.-..-...-...+..|...|.--+..-+..++..
T Consensus         8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVa   87 (205)
T KOG1003|consen    8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVA   87 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666677766666555555555555666555555555555543333322233444444444433344444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          437 EELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERD  489 (591)
Q Consensus       437 ~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~  489 (591)
                      ..|-.+.......+.++.-....+.+|+..+......+.++...-+.+....+
T Consensus        88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d  140 (205)
T KOG1003|consen   88 RKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEE  140 (205)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence            55555555566666555555566667777776666666666555444443333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.32  E-value=19  Score=36.62  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          392 ESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDE-------VMEELQIALDQKSLLESQIAESDQTAKELE  464 (591)
Q Consensus       392 ~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~-------~~~el~~~~~~~~~l~~~~~e~~~~~~ele  464 (591)
                      .|.+++.++|.....=.+.++...-.|....+.+++.|+..+.       +.++++.+.+....+++..+.+...+.-.+
T Consensus        15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke   94 (307)
T PF10481_consen   15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE   94 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
Confidence            4566777766554333333333333344444555555544432       445555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          465 QKIISAVELLQNYKKEQDELQMERDKAVKEAEELR  499 (591)
Q Consensus       465 ~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~~  499 (591)
                      .++.-...+|...+..++.|..+-.+...+.+...
T Consensus        95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ  129 (307)
T PF10481_consen   95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ  129 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666665555555555433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.27  E-value=35  Score=41.50  Aligned_cols=7  Identities=29%  Similarity=0.487  Sum_probs=4.0

Q ss_pred             ccEEEEE
Q 007740          190 SCHIWFI  196 (591)
Q Consensus       190 ~C~V~vV  196 (591)
                      +|.|-|-
T Consensus       159 SCsV~vh  165 (1293)
T KOG0996|consen  159 SCSVEVH  165 (1293)
T ss_pred             ceeEEEe
Confidence            3776553

>smart00090 RIO RIO-like kinase

Probab=90.16  E-value=0.24  Score=49.90  Aligned_cols=55  Identities=15%  Similarity=0.137  Sum_probs=39.3

Q ss_pred             CCcCCccccccceeEEEEE--E-cCeEEEEEEccCCCCC-------------------C-----hhHHHHHHHHHHcCCC
Q 007740          530 FDPSLKIGEGGYGSIYKGL--L-RHMQVAIKMLHPHSLQ-------------------G-----PSEFQQEVGAYESFIF  582 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~--l-~g~~VAVK~L~~~~~~-------------------~-----~~~F~~Ev~il~s~lr  582 (591)
                      |.....||.|+||.||+|.  . .|..||||.+......                   .     ...+..|..++ .++.
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L-~~L~  108 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNL-QRLY  108 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence            4455689999999999998  3 3899999998653210                   0     12356899888 8886


Q ss_pred             CCC
Q 007740          583 HFN  585 (591)
Q Consensus       583 HpN  585 (591)
                      |.+
T Consensus       109 ~~~  111 (237)
T smart00090      109 EAG  111 (237)
T ss_pred             hcC
Confidence            543

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=90.13  E-value=12  Score=32.71  Aligned_cols=65  Identities=28%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          414 FEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQ  485 (591)
Q Consensus       414 ~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~  485 (591)
                      ++..|..+|....++..+++.+..-++.++.+.....++       +.+|+.++..+...+...+....+++
T Consensus        21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr-------~~eLqaki~ea~~~le~eK~ak~~l~   85 (107)
T PF09304_consen   21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQR-------IAELQAKIDEARRNLEDEKQAKLELE   85 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444455555555555555555555444444       44455555444444444333333333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.08  E-value=38  Score=40.41  Aligned_cols=79  Identities=18%  Similarity=0.143  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007740          356 DNLYDQLAQAMAEAENSRREAF--------------EEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG  421 (591)
Q Consensus       356 ~~~~~~l~~~~~e~~~~r~e~~--------------~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~e  421 (591)
                      +.+++.+++++.+++.+..++.              +-..++.++-+....-.-+++.++....-..++|......|..-
T Consensus       254 ~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~  333 (1200)
T KOG0964|consen  254 EQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKV  333 (1200)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHH
Confidence            3566666666666666654433              22222233323333333345666666655555555555555554


Q ss_pred             HHHHHHHHHhHHH
Q 007740          422 KLELERMKKQHDE  434 (591)
Q Consensus       422 k~~~~~~k~e~~~  434 (591)
                      +..+++.+.++.+
T Consensus       334 ~~ki~e~~~EL~~  346 (1200)
T KOG0964|consen  334 KDKIEEKKDELSK  346 (1200)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=90.01  E-value=42  Score=42.53  Aligned_cols=11  Identities=0%  Similarity=-0.170  Sum_probs=7.2

Q ss_pred             CCEEEEeecCC
Q 007740           44 EDKIYVAVAKQ   54 (591)
Q Consensus        44 ~~kIlVAVD~S   54 (591)
                      +..+++.--||
T Consensus        25 g~~~~~G~NGs   35 (1353)
T TIGR02680        25 GRLLLRGNNGA   35 (1353)
T ss_pred             CeEEEECCCCC
Confidence            35666677777

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.87  E-value=6.6  Score=38.76  Aligned_cols=23  Identities=17%  Similarity=0.071  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 007740          462 ELEQKIISAVELLQNYKKEQDEL  484 (591)
Q Consensus       462 ele~~~~~~~~~l~~~~~~~~el  484 (591)
                      +|+++......++..++.+.+.+
T Consensus       136 ~L~~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884        136 GLKEENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=89.79  E-value=33  Score=38.69  Aligned_cols=94  Identities=20%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 007740          364 QAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAE-------ELKRRKEFEEALANGKLELERMKKQHDEVM  436 (591)
Q Consensus       364 ~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~e-------e~~~rk~~E~~l~~ek~~~~~~k~e~~~~~  436 (591)
                      .++.++.+|+-|+.+-..++.++++....+..++..+...+.+       =.++.+.+|+.+...|.+..++..+++.+.
T Consensus       110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4556666666666666566666666666665555543322222       122333444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 007740          437 EELQIALDQKSLLESQIAESD  457 (591)
Q Consensus       437 ~el~~~~~~~~~l~~~~~e~~  457 (591)
                      .++....-.+..++.+.+.+.
T Consensus       190 ~~ld~Etllr~d~~n~~q~Ll  210 (546)
T KOG0977|consen  190 KQLDDETLLRVDLQNRVQTLL  210 (546)
T ss_pred             HHHHHHHHHHHHHHhHHHHHH
Confidence            444444333344444444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.63  E-value=29  Score=36.27  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=19.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 007740          356 DNLYDQLAQAMAEAENSRREAFE  378 (591)
Q Consensus       356 ~~~~~~l~~~~~e~~~~r~e~~~  378 (591)
                      +.+-++++..+.|-..||.|+-+
T Consensus       163 e~Lq~Klk~LEeEN~~LR~Ea~~  185 (306)
T PF04849_consen  163 EALQEKLKSLEEENEQLRSEASQ  185 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888899999999999988763

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=89.61  E-value=0.25  Score=56.23  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc------CeEEEEEEccC
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHP  561 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~  561 (591)
                      .+++|...+.||+|+||.||+|...      +..||||++..
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~  171 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE  171 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence            5678888899999999999999985      46899998854

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=89.55  E-value=59  Score=41.25  Aligned_cols=20  Identities=35%  Similarity=0.222  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007740          384 GKAEKDAIESIRRAKASESL  403 (591)
Q Consensus       384 ~~ae~e~~~a~~~a~~~e~~  403 (591)
                      +.+......+.++..+++..
T Consensus       871 ~~A~~~~~~a~~~le~ae~~  890 (1353)
T TIGR02680       871 RHAATRAAEQRARAARAESD  890 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.40  E-value=45  Score=39.99  Aligned_cols=18  Identities=28%  Similarity=0.401  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 007740          362 LAQAMAEAENSRREAFEE  379 (591)
Q Consensus       362 l~~~~~e~~~~r~e~~~~  379 (591)
                      ++....+++.++.+++++
T Consensus       743 ~~~~~e~v~e~~~~Ike~  760 (1174)
T KOG0933|consen  743 LKELLEEVEESEQQIKEK  760 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.29  E-value=26  Score=41.70  Aligned_cols=135  Identities=17%  Similarity=0.116  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHhHHHHHHHHHh
Q 007740          358 LYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLY----AE--ELKRRKEFEEALANGKLELERMKKQ  431 (591)
Q Consensus       358 ~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~----~e--e~~~rk~~E~~l~~ek~~~~~~k~e  431 (591)
                      ....|+.+..+++..+.|+..-.-+|...-.+..--+.+...+++..    ..  +-.|=.-.+++-.|-+.++++++.-
T Consensus       326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~  405 (1200)
T KOG0964|consen  326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRG  405 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777777766666554443333333333333211    00  0001111133333444444444433


Q ss_pred             HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          432 HDEVME-------ELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAV  492 (591)
Q Consensus       432 ~~~~~~-------el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~  492 (591)
                      .+...+       ++..+..+..+...++.++...+.+...++........++++++++++..|..+-
T Consensus       406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lW  473 (1200)
T KOG0964|consen  406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELW  473 (1200)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333       3333333333333333333333444444444444455555666666665554333

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=89.13  E-value=47  Score=37.99  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=14.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 007740          356 DNLYDQLAQAMAEAENSRREAFE  378 (591)
Q Consensus       356 ~~~~~~l~~~~~e~~~~r~e~~~  378 (591)
                      ..+..++...+.|.++.|++-.+
T Consensus       246 ~l~~KQ~rk~meEreK~R~erEr  268 (811)
T KOG4364|consen  246 KLLLKQLRKNMEEREKERKERER  268 (811)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHH
Confidence            34556666677777777766554

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=89.00  E-value=33  Score=38.70  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          422 KLELERMKKQHDEVMEELQIALDQKSLLESQIA  454 (591)
Q Consensus       422 k~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~  454 (591)
                      ..++...+.....+..++..++.+...+..+++
T Consensus       154 eAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~  186 (546)
T KOG0977|consen  154 EAEINTLKRRIKALEDELKRLKAENSRLREELA  186 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            344444444444444444444444444444433

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=88.99  E-value=19  Score=40.23  Aligned_cols=11  Identities=45%  Similarity=0.703  Sum_probs=5.4

Q ss_pred             eEEEEEEeCCC
Q 007740           73 RICIIHVHTPA   83 (591)
Q Consensus        73 ~I~llHV~~~~   83 (591)
                      ++.++|+++|.
T Consensus        50 ~y~ii~~vd~~   60 (489)
T PF05262_consen   50 RYYIIHAVDPE   60 (489)
T ss_pred             cEEEEEecCcc
Confidence            45555555443

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=88.90  E-value=0.081  Score=57.17  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      +.|..-++||+||||.||-+..+  |..+|.|+|...   ..++...-.+|-.|| .+++-|-||.|
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL-~kV~s~FiVsl  250 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQIL-EKVSSPFIVSL  250 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHH-HHhccCcEEEE
Confidence            44777889999999999999887  889999999542   334455567888999 99999988865

>PRK13820 argininosuccinate synthase; Provisional

Probab=88.89  E-value=4.3  Score=44.06  Aligned_cols=90  Identities=12%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLI  124 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~  124 (591)
                      ++|+||+-|- ..|.-++.|+.+.+.-..|+.+|+.....      .         +               -++..+.+
T Consensus         3 ~kVvvA~SGG-vDSsvll~lL~e~~g~~~Viav~vd~g~~------~---------~---------------e~~~a~~~   51 (394)
T PRK13820          3 KKVVLAYSGG-LDTSVCVPLLKEKYGYDEVITVTVDVGQP------E---------E---------------EIKEAEEK   51 (394)
T ss_pred             CeEEEEEeCc-HHHHHHHHHHHHhcCCCEEEEEEEECCCC------h---------H---------------HHHHHHHH
Confidence            5899999999 88999999986643223899999964310      0         0               11223444


Q ss_pred             HHHcCCceEEEEEe----------------------------cCChHHHHHHHHHHcCCCEEEEccCCC
Q 007740          125 CRQMGVRAEKLDTE----------------------------SESTEKGILELISHYGIRKLVMGAAAD  165 (591)
Q Consensus       125 c~~~gV~~e~~vie----------------------------~~~~~~~Ive~a~~~~idlIVmGs~g~  165 (591)
                      |...||++..+-+.                            ..-+.+.++++|++++++.|..|+.|+
T Consensus        52 a~~lGi~~~vvd~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~  120 (394)
T PRK13820         52 AKKLGDKHYTIDAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK  120 (394)
T ss_pred             HHHcCCCEEEEeCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence            55555544332111                            012356789999999999999999765

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=88.85  E-value=24  Score=36.04  Aligned_cols=69  Identities=20%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007740          361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMK  429 (591)
Q Consensus       361 ~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k  429 (591)
                      -|++-+.-++.||-.|++.-.+...-+.|+.+-+-+.-....-|.||+=.|=|.+-+|.+.+.+++++|
T Consensus        62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLk  130 (305)
T PF15290_consen   62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLK  130 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888889999999998877776666666665555444444444444444444444444444444444

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=88.43  E-value=21  Score=33.07  Aligned_cols=64  Identities=22%  Similarity=0.206  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          422 KLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQ  485 (591)
Q Consensus       422 k~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~  485 (591)
                      +++++-++...+.++.+|.-+..-....+++..++..+..+...........|.++-.+...++
T Consensus        83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r  146 (159)
T PF04949_consen   83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR  146 (159)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888887777888888888888888888888777777777776666553

This entry represents proteins annotated as RAB6-interacting golgins.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=88.34  E-value=26  Score=38.76  Aligned_cols=127  Identities=20%  Similarity=0.258  Sum_probs=64.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH----
Q 007740          352 GSVDDNLYDQLAQAMAEAENSRREAF---EEALRRGK--------AEKDAIESIRRAKAS---ESLYAEELKRRKE----  413 (591)
Q Consensus       352 ~~~~~~~~~~l~~~~~e~~~~r~e~~---~~~~~~~~--------ae~e~~~a~~~a~~~---e~~~~ee~~~rk~----  413 (591)
                      ...++.+..+|+....|..++|.++.   .|..-+..        ..++.-.+.-++.-.   -..+..|..+..|    
T Consensus       158 ~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~sk  237 (596)
T KOG4360|consen  158 RELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSK  237 (596)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466788888888888888887754   22222211        112222221111111   1112222221111    


Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          414 FEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYK  478 (591)
Q Consensus       414 ~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~  478 (591)
                      +...|.-.++++.....++++...=|+..++....+..+..|.+.+.+|+.+-+.++++.|+.++
T Consensus       238 Llsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  238 LLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            12222333444444555666666666666666666777777777666666666666666555443

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed

Probab=88.14  E-value=2.8  Score=42.86  Aligned_cols=121  Identities=12%  Similarity=0.014  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhc--C-CCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCce
Q 007740           56 KESKSVLLWALQNS--G-GKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRA  132 (591)
Q Consensus        56 ~~S~~Al~wAl~~~--~-g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~~gV~~  132 (591)
                      +.-.+||+.|+.+-  . |.+|++|+|=++..                            .....|..+..+-...+|.+
T Consensus        36 ~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a----------------------------~~~~~lr~aLAmGaD~avli   87 (256)
T PRK03359         36 QYDLNAIEAACQLKQQAAEAQVTALSVGGKAL----------------------------TNAKGRKDVLSRGPDELIVV   87 (256)
T ss_pred             hhhHHHHHHHHHHhhhcCCCEEEEEEECCcch----------------------------hhHHHHHHHHHcCCCEEEEE
Confidence            66788999999877  2 47999998865421                            11234444443322222222


Q ss_pred             EEEEEecCC---hHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEE-EEcCCceeeeecC
Q 007740          133 EKLDTESES---TEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIW-FICNGNLIYTREG  207 (591)
Q Consensus       133 e~~vie~~~---~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~-vV~kgk~~~~R~a  207 (591)
                      ..--+.+.|   .+..|..++++.++|+|+.|...-.+-...+-..   +|..+=--.-.+|.=+ .+..|.+..+|+.
T Consensus        88 ~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~---lAe~Lg~P~vt~v~~l~~~~~~~v~v~r~~  163 (256)
T PRK03359         88 IDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLL---VGEILNIPAINGVSKIISLTDDTLTVEREL  163 (256)
T ss_pred             ecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHH---HHHHhCCCceeeEEEEEEecCCEEEEEEEc
Confidence            211112222   4678889999999999999987644322111111   3333211111122223 2467777888874

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=88.10  E-value=32  Score=39.31  Aligned_cols=57  Identities=25%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 007740          389 DAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQ  445 (591)
Q Consensus       389 e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~  445 (591)
                      ..-.-..++..+-.....|...++..+....+....+..++.+...+..++..+.+.
T Consensus       283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s  339 (569)
T PRK04778        283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS  339 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333344455555566666666666666666555555555555444444444444333

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=88.08  E-value=3.4  Score=40.17  Aligned_cols=89  Identities=21%  Similarity=0.399  Sum_probs=58.2

Q ss_pred             EEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           47 IYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICR  126 (591)
Q Consensus        47 IlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~  126 (591)
                      |+|++-|. ..|-.++.++.+.. +..|+.|||..+..         +                    ..-++....+|.
T Consensus         1 vvva~SGG-~DS~~ll~ll~~~~-~~~v~~v~vd~g~~---------~--------------------~~~~~~~~~~a~   49 (202)
T cd01990           1 VAVAFSGG-VDSTLLLKAAVDAL-GDRVLAVTATSPLF---------P--------------------RRELEEAKRLAK   49 (202)
T ss_pred             CEEEccCC-HHHHHHHHHHHHHh-CCcEEEEEeCCCCC---------C--------------------HHHHHHHHHHHH
Confidence            68999998 88988888876654 33788999964421         0                    012233445677


Q ss_pred             HcCCceEEEEEec------------------CChHHHHHHHHHHcCCCEEEEccCCCc
Q 007740          127 QMGVRAEKLDTES------------------ESTEKGILELISHYGIRKLVMGAAADK  166 (591)
Q Consensus       127 ~~gV~~e~~vie~------------------~~~~~~Ive~a~~~~idlIVmGs~g~~  166 (591)
                      .-|++...+.+..                  .-....+.++|.++|++.|+.|.+...
T Consensus        50 ~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD  107 (202)
T cd01990          50 EIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADD  107 (202)
T ss_pred             HcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            7788766544320                  012235667899999999999988643

Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.84  E-value=33  Score=34.73  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=15.5

Q ss_pred             ccceeEEEEEEc--CeEEEEEEcc
Q 007740          539 GGYGSIYKGLLR--HMQVAIKMLH  560 (591)
Q Consensus       539 G~~G~Vykg~l~--g~~VAVK~L~  560 (591)
                      |+-=.+|.|.+.  |..+.|..|+
T Consensus       165 g~~i~~~~~~i~~dG~~~~V~~Lr  188 (251)
T PF11932_consen  165 GRTIEVYQGTITLDGEERQVDFLR  188 (251)
T ss_pred             CCceeEEEEEEeECCeEEEEEEEe
Confidence            444468999874  7887777764

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=87.38  E-value=58  Score=38.57  Aligned_cols=79  Identities=16%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHhHHH
Q 007740          364 QAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA---------NGKLELERMKKQHDE  434 (591)
Q Consensus       364 ~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~---------~ek~~~~~~k~e~~~  434 (591)
                      .+..|..++.-|+..-.+++...+.++.-...++..|+..+.+..++.....++|.         .....+++...+++.
T Consensus       368 ~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker  447 (775)
T PF10174_consen  368 KLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKER  447 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence            45556666666666666667777777777777888888888888777777777776         223445555555555


Q ss_pred             HHHHHHHH
Q 007740          435 VMEELQIA  442 (591)
Q Consensus       435 ~~~el~~~  442 (591)
                      +...+.+.
T Consensus       448 ~~e~l~e~  455 (775)
T PF10174_consen  448 LQERLEEQ  455 (775)
T ss_pred             HHHHHHHH
Confidence            55555443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=87.34  E-value=32  Score=37.50  Aligned_cols=119  Identities=12%  Similarity=0.133  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 007740          356 DNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEV  435 (591)
Q Consensus       356 ~~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~  435 (591)
                      +.-..++.+  .++++.|..+......-...+.+.-.+....+..|+.+++-...-+..+.++..+++.-..+.+.++  
T Consensus       338 e~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~--  413 (493)
T KOG0804|consen  338 EQIMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD--  413 (493)
T ss_pred             HHHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          436 MEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK  479 (591)
Q Consensus       436 ~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~  479 (591)
                       --...+++..+.+.......+.++.+|++|++...-.+...++
T Consensus       414 -vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqk  456 (493)
T KOG0804|consen  414 -VWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQK  456 (493)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhh

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=87.24  E-value=46  Score=37.16  Aligned_cols=14  Identities=14%  Similarity=0.323  Sum_probs=11.3

Q ss_pred             HcCCCEEEEccCCC
Q 007740          152 HYGIRKLVMGAAAD  165 (591)
Q Consensus       152 ~~~idlIVmGs~g~  165 (591)
                      ..++|.|++|...+
T Consensus        64 ~~~ADi~~ig~~a~   77 (489)
T PF05262_consen   64 KLDADIFIIGENAR   77 (489)
T ss_pred             CCCCcEEEEcCCCC
Confidence            46899999998654

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=86.85  E-value=36  Score=34.09  Aligned_cols=45  Identities=20%  Similarity=0.209  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASE  401 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e  401 (591)
                      .+..-+.++..++..+|+.+-+-+......++++-.+...+..++
T Consensus        28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e   72 (225)
T COG1842          28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE   72 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666666666666666656666666665555554443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=86.74  E-value=0.97  Score=44.82  Aligned_cols=57  Identities=28%  Similarity=0.401  Sum_probs=45.5

Q ss_pred             cCCccccccceeEEEEEEcCeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCC-Cccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHF-NLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHp-NLV~li  590 (591)
                      ....||.|+||.||++... ..+++|.+......   ....|.+|+.++ ..+.|+ |++.++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~i~~~~   64 (384)
T COG0515           4 ILRKLGEGSFGEVYLARDR-KLVALKVLAKKLESKSKEVERFLREIQIL-ASLNHPPNIVKLY   64 (384)
T ss_pred             eEEeecCCCCeEEEEEEec-cEEEEEeechhhccchhHHHHHHHHHHHH-HHccCCcceeeEE
Confidence            3457899999999999888 78899999654332   367799999999 999988 687653

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.71  E-value=14  Score=38.88  Aligned_cols=72  Identities=26%  Similarity=0.389  Sum_probs=36.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007740          423 LELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKS  501 (591)
Q Consensus       423 ~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~~~~  501 (591)
                      ++++.+..+.+++..++..++.+...+..+..+.-.....++-+       +.++..+++.+..+.+....+.+.+++.
T Consensus        64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~-------l~~~~~e~~sl~~q~~~~~~~L~~L~kt  135 (314)
T PF04111_consen   64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLE-------LIEFQEERDSLKNQYEYASNQLDRLRKT  135 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455555555555555555555544444443433333333333       3444455555555556666666666553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=86.56  E-value=79  Score=39.66  Aligned_cols=13  Identities=31%  Similarity=0.376  Sum_probs=5.9

Q ss_pred             hHHHHHHHHHHHH
Q 007740          357 NLYDQLAQAMAEA  369 (591)
Q Consensus       357 ~~~~~l~~~~~e~  369 (591)
                      .+-.+++.+...+
T Consensus       604 ~L~~~l~~~~~~l  616 (1201)
T PF12128_consen  604 ELRERLEQAEDQL  616 (1201)
T ss_pred             HHHHHHHHHHHHH
Confidence            4555444444333

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=86.35  E-value=0.18  Score=53.76  Aligned_cols=62  Identities=27%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             hcCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .+.|.....+-+|.||.||.|.|+.       ..|-+|.+... +.-....|.+|...+ -.+.||||..+
T Consensus       283 r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~ll-y~~sH~nll~V  352 (563)
T KOG1024|consen  283 RCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLL-YGASHPNLLSV  352 (563)
T ss_pred             hhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHH-hcCcCCCccce
Confidence            3445556678999999999998861       34667777443 333456789999888 88999999865

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.19  E-value=70  Score=36.78  Aligned_cols=42  Identities=12%  Similarity=0.142  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHcCCc----eEEEEEec-CChHHHHHHHHHHcCCCEE
Q 007740          117 HLDMCLLICRQMGVR----AEKLDTES-ESTEKGILELISHYGIRKL  158 (591)
Q Consensus       117 lL~~~~~~c~~~gV~----~e~~vie~-~~~~~~Ive~a~~~~idlI  158 (591)
                      +-..+...|...|+.    +.++..-. .++...++-++++..-+..
T Consensus        67 ~~~~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiekLP~~~~  113 (594)
T PF05667_consen   67 VGTSLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEKLPRENT  113 (594)
T ss_pred             HHHHHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHHCCcccc
Confidence            444556678877764    33333322 4677778888998888744

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=86.17  E-value=42  Score=34.22  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 007740          395 RRAKASESLYAEELKRRKEFEEA  417 (591)
Q Consensus       395 ~~a~~~e~~~~ee~~~rk~~E~~  417 (591)
                      |+.++||+.-.++.++.++.|++
T Consensus       331 qekqeleqmaeeekkr~eeaeer  353 (445)
T KOG2891|consen  331 QEKQELEQMAEEEKKREEEAEER  353 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555554444444443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=85.85  E-value=68  Score=36.30  Aligned_cols=44  Identities=11%  Similarity=0.079  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          359 YDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASES  402 (591)
Q Consensus       359 ~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~  402 (591)
                      -.+|..+..++.++++++..--.-+.++-.++-.+++.+.+|..
T Consensus        33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~   76 (522)
T PF05701_consen   33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKL   76 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666655554333344455555555555555443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=85.85  E-value=1  Score=46.05  Aligned_cols=54  Identities=15%  Similarity=0.220  Sum_probs=42.7

Q ss_pred             ccccccceeEEEEEEc--CeEEEEEEccC-CCCCChhHHHHHHHHHHcCCC-CCCcccc
Q 007740          535 KIGEGGYGSIYKGLLR--HMQVAIKMLHP-HSLQGPSEFQQEVGAYESFIF-HFNLVDS  589 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~--g~~VAVK~L~~-~~~~~~~~F~~Ev~il~s~lr-HpNLV~l  589 (591)
                      .||.|..|.|++..++  |...|||.+.. .+....+.....+.++ .+.+ .|.||+.
T Consensus        99 dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv-~~s~dcpyIV~c  156 (391)
T KOG0983|consen   99 DLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVV-LKSHDCPYIVQC  156 (391)
T ss_pred             hhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHH-hhccCCCeeeee
Confidence            5899999999999998  69999999955 3444456677888888 6655 6888864

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.74  E-value=34  Score=38.76  Aligned_cols=17  Identities=18%  Similarity=0.364  Sum_probs=11.5

Q ss_pred             CcccccCHHHHHHhhcC
Q 007740          513 QFFSDFSFSEIEGATHN  529 (591)
Q Consensus       513 ~~~~~~s~~el~~aT~~  529 (591)
                      ..+..|+.+.|..+-..
T Consensus       523 k~ve~~t~~~Ie~~e~~  539 (652)
T COG2433         523 KVVEKLTLEAIEEAEEE  539 (652)
T ss_pred             ehhhhhhHHHHHhHHHh
Confidence            34677888888766543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.71  E-value=15  Score=36.32  Aligned_cols=28  Identities=14%  Similarity=0.264  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          456 SDQTAKELEQKIISAVELLQNYKKEQDE  483 (591)
Q Consensus       456 ~~~~~~ele~~~~~~~~~l~~~~~~~~e  483 (591)
                      +..+.++|.+++..++..+..+..+.+.
T Consensus       137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~  164 (206)
T PRK10884        137 LKEENQKLKNQLIVAQKKVDAANLQLDD  164 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=85.62  E-value=55  Score=38.27  Aligned_cols=61  Identities=7%  Similarity=0.078  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007740          386 AEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQK  446 (591)
Q Consensus       386 ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~  446 (591)
                      .|.+..+-+.+...|++.+.+-..+...+++.++....++.+.+.+.+....++..+.+.+
T Consensus        97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL  157 (1265)
T KOG0976|consen   97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL  157 (1265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3455555566666666666665555555666665555555555555555555555554443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=85.53  E-value=1.4  Score=48.67  Aligned_cols=45  Identities=16%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHH
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAY  577 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il  577 (591)
                      .|++ ..||.|++|.||+|.+. |..||||+.++..   ...|..++.+|
T Consensus       119 ~fd~-~plasaSigQVh~A~l~~G~~VaVKv~rp~i---~~~i~~Dl~~l  164 (437)
T TIGR01982       119 EFEE-KPLAAASIAQVHRARLVDGKEVAVKVLRPGI---EKTIAADIALL  164 (437)
T ss_pred             hCCC-cceeeeehhheEEEEecCCCEEEEEeeCCCc---HHHHHHHHHHH
Confidence            3543 57999999999999997 9999999997754   23455555444

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=85.38  E-value=67  Score=39.40  Aligned_cols=71  Identities=24%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 007740          365 AMAEAENSRREAFEEALRRGKAEK-----DAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEV  435 (591)
Q Consensus       365 ~~~e~~~~r~e~~~~~~~~~~ae~-----e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~  435 (591)
                      +..+++..-+++.++..+...-+.     +...+....++.+....++..+++.++..+...+++++..++..+.+
T Consensus       459 ~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~  534 (1317)
T KOG0612|consen  459 AVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA  534 (1317)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555544444422222     33335556666666666666666677777777666676665554444

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.38  E-value=71  Score=36.10  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          439 LQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQME  487 (591)
Q Consensus       439 l~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~  487 (591)
                      +..+.++...++.++.++.....+++.++......+.++..+..++.++
T Consensus       353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke  401 (562)
T PHA02562        353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE  401 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444455555555555555555555554443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=85.32  E-value=22  Score=42.20  Aligned_cols=18  Identities=0%  Similarity=-0.265  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHcCCCEEEE
Q 007740          143 EKGILELISHYGIRKLVM  160 (591)
Q Consensus       143 ~~~Ive~a~~~~idlIVm  160 (591)
                      .-+...++..+++..-.+
T Consensus       278 l~a~a~~a~~~~~~~P~~  295 (782)
T PRK00409        278 IFARARYAKALKATFPLF  295 (782)
T ss_pred             HHHHHHHHHHCCCccceE
Confidence            334444444444433333

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=85.23  E-value=48  Score=38.53  Aligned_cols=24  Identities=8%  Similarity=0.122  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHcCCceEEEEEec
Q 007740          116 NHLDMCLLICRQMGVRAEKLDTES  139 (591)
Q Consensus       116 ~lL~~~~~~c~~~gV~~e~~vie~  139 (591)
                      .+|..-.++-...|..+..+...+
T Consensus       488 rILkeEQElYekEGLnv~ei~f~D  511 (1259)
T KOG0163|consen  488 RILKEEQELYEKEGLNVPEIEFTD  511 (1259)
T ss_pred             HHHHHHHHHHHhcCCCCCceEecc
Confidence            345555566667787776655443

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=84.87  E-value=35  Score=37.05  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=23.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          425 LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNY  477 (591)
Q Consensus       425 ~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~  477 (591)
                      +++++++.+.+...+++++..+.++..+..+.-+.......+...-+..++++
T Consensus       199 lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sl  251 (447)
T KOG2751|consen  199 LEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSL  251 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence            33333444444455555555555555544444444444444443333333333

>PRK12274 serine/threonine protein kinase; Provisional

Probab=84.73  E-value=1.3  Score=43.94  Aligned_cols=60  Identities=8%  Similarity=-0.130  Sum_probs=41.5

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCC--C--ChhHHHHHHHHHHcCCCC-CCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSL--Q--GPSEFQQEVGAYESFIFH-FNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~--~--~~~~F~~Ev~il~s~lrH-pNLV~li  590 (591)
                      +.....|+.|+||+||...-.+..++.+.+.....  .  ....|.+|+.+| .++.| ++++.++
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL-~~L~~~~~vP~ll   68 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALAL-RQLDGLPRTPRLL   68 (218)
T ss_pred             cccceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHH-HhcCCCCCCCEEE
Confidence            34456899999999995444578888887754322  1  112588999999 99954 6666653

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=84.62  E-value=30  Score=33.52  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 007740          365 AMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALD  444 (591)
Q Consensus       365 ~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~  444 (591)
                      +..|+++.++|+...                   .++..+.+-..+-..+...|...+++-.+..........+.+.+..
T Consensus       101 A~~eirR~~LeAQka-------------------~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~  161 (192)
T PF11180_consen  101 ADVEIRRAQLEAQKA-------------------QLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEA  161 (192)
T ss_pred             HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 007740          445 QKSLLESQIAESDQTAKELEQK  466 (591)
Q Consensus       445 ~~~~l~~~~~e~~~~~~ele~~  466 (591)
                      ++..+..++..+++++..|+.+
T Consensus       162 e~~aaqaQL~~lQ~qv~~Lq~q  183 (192)
T PF11180_consen  162 ERRAAQAQLRQLQRQVRQLQRQ  183 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.34  E-value=30  Score=39.15  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          452 QIAESDQTAKELEQKIISAVELLQNYKKEQDELQ  485 (591)
Q Consensus       452 ~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~  485 (591)
                      ++...+..+..|+.++........++++++.++.
T Consensus       475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         475 EIRARDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555544444444444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=84.27  E-value=1.2e+02  Score=37.96  Aligned_cols=11  Identities=36%  Similarity=0.284  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 007740          359 YDQLAQAMAEA  369 (591)
Q Consensus       359 ~~~l~~~~~e~  369 (591)
                      ...+.++..+.
T Consensus       613 ~~~l~~~~~~~  623 (1201)
T PF12128_consen  613 EDQLQSAEERQ  623 (1201)
T ss_pred             HHHHHHHHHHH
Confidence            33344333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=84.25  E-value=50  Score=33.38  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=27.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          423 LELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAV  471 (591)
Q Consensus       423 ~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~  471 (591)
                      .++...+++...+..++..++.....++.++.....++..++..+..+.
T Consensus        96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~  144 (239)
T COG1579          96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE  144 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555566666666666666666555555555555554444

>TIGR00606 rad50 rad50

Probab=84.14  E-value=1e+02  Score=39.11  Aligned_cols=19  Identities=5%  Similarity=0.081  Sum_probs=8.7

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRRE  375 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e  375 (591)
                      .+...+.....+++.++.+
T Consensus       826 ele~ei~~~~~el~~l~~~  844 (1311)
T TIGR00606       826 QVNQEKQEKQHELDTVVSK  844 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=84.13  E-value=19  Score=28.45  Aligned_cols=23  Identities=35%  Similarity=0.536  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 007740          446 KSLLESQIAESDQTAKELEQKII  468 (591)
Q Consensus       446 ~~~l~~~~~e~~~~~~ele~~~~  468 (591)
                      ....+.+++++..+..+|++++.
T Consensus        27 n~~~e~kLqeaE~rn~eL~~ei~   49 (61)
T PF08826_consen   27 NLAFESKLQEAEKRNRELEQEIE   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555554443

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=84.11  E-value=86  Score=36.59  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=12.8

Q ss_pred             CCCEEEEeecCC-hHHHHHHHHHHH
Q 007740           43 IEDKIYVAVAKQ-VKESKSVLLWAL   66 (591)
Q Consensus        43 ~~~kIlVAVD~S-~~~S~~Al~wAl   66 (591)
                      -+--|-||.--- .-+++.||..|+
T Consensus       404 kGTvIrVPLK~~eA~n~RDALaKai  428 (1259)
T KOG0163|consen  404 KGTVIRVPLKIHEASNARDALAKAI  428 (1259)
T ss_pred             cceEEEeeccHHhhcchHHHHHHHH
Confidence            345677777532 014556665554

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=84.11  E-value=30  Score=41.27  Aligned_cols=138  Identities=20%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVM  436 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~  436 (591)
                      .+...|++.++|+.+||+|..+-..--..|-...-+...-....+.|-    ..-++.--.+..-|..+++++++...+.
T Consensus       202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d----~~ykerlmDs~fykdRveelkedN~vLl  277 (1195)
T KOG4643|consen  202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD----TTYKERLMDSDFYKDRVEELKEDNRVLL  277 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC----CccchhhhhhHHHHHHHHHHHhhhHHHH


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          437 EELQIALDQKSLLESQI--AESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEEL  498 (591)
Q Consensus       437 ~el~~~~~~~~~l~~~~--~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~  498 (591)
                      ++-+++++|+..++.+-  ......+-.+.+++.-........+.+..+|..+-....-+.+.+
T Consensus       278 eekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL  341 (1195)
T KOG4643|consen  278 EEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL  341 (1195)
T ss_pred             HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=84.05  E-value=36  Score=31.54  Aligned_cols=59  Identities=25%  Similarity=0.321  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          422 KLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE  480 (591)
Q Consensus       422 k~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~  480 (591)
                      +.+++.+..++..+..+|..+...+..+.+.+++.+.++.+|+.-.......|+...++
T Consensus        58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   58 EEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            44455555555556666666666666666777777777777766666665555554444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=83.66  E-value=75  Score=34.97  Aligned_cols=31  Identities=6%  Similarity=-0.091  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAE  387 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae  387 (591)
                      .+....+.+-.++++++-+...-..++++|+
T Consensus       261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~  291 (622)
T COG5185         261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAM  291 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556677888888876665555555554

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=83.46  E-value=49  Score=32.68  Aligned_cols=44  Identities=11%  Similarity=0.071  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKAS  400 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~  400 (591)
                      .+...+.++...+..++..+-.-+......+++...+...+..+
T Consensus        27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~   70 (221)
T PF04012_consen   27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW   70 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555666555555555556666655555555444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=83.24  E-value=39  Score=31.35  Aligned_cols=22  Identities=14%  Similarity=0.287  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 007740          446 KSLLESQIAESDQTAKELEQKI  467 (591)
Q Consensus       446 ~~~l~~~~~e~~~~~~ele~~~  467 (591)
                      ...+..++......++...+++
T Consensus        96 ~~~l~~~~~~~~~~~k~~kee~  117 (151)
T PF11559_consen   96 ERQLQKQLKSLEAKLKQEKEEL  117 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=83.04  E-value=1.2e+02  Score=36.70  Aligned_cols=15  Identities=13%  Similarity=0.248  Sum_probs=6.9

Q ss_pred             HhccCCcchHHHHhc
Q 007740          171 KMMDLKSKKAISVRQ  185 (591)
Q Consensus       171 ~l~Gs~s~Va~~V~~  185 (591)
                      .++|..-+|-.||=+
T Consensus        71 k~lGRak~VgeyIK~   85 (1072)
T KOG0979|consen   71 KLLGRAKKVGEYIKR   85 (1072)
T ss_pred             hhccchhHHHHHHhc
Confidence            455543345555533

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=83.01  E-value=0.33  Score=49.42  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=50.6

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccccceeEEEEEEcCeEEEEEEccC--CCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          515 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHP--HSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~--~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.-+++.+|...|       +|.+.-.|..|+|.+.|.-+.+|+|..  ....-..+|..|...| .-..||||+.++
T Consensus       184 ~~gid~~~lnl~t-------kl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~l-rifshpnilpvl  253 (448)
T KOG0195|consen  184 YTGIDVSSLNLIT-------KLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPAL-RIFSHPNILPVL  253 (448)
T ss_pred             ccCcchhhhhhhh-------hhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcce-eeecCCchhhhh
Confidence            4445566665544       577888899999999998888888854  2333356799999888 878999998764

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=82.98  E-value=49  Score=32.39  Aligned_cols=10  Identities=40%  Similarity=0.391  Sum_probs=4.1

Q ss_pred             HHHHHHHHHH
Q 007740          364 QAMAEAENSR  373 (591)
Q Consensus       364 ~~~~e~~~~r  373 (591)
                      +|..|++..+
T Consensus        42 ~A~~eAe~~~   51 (201)
T PF12072_consen   42 EAEREAEAIK   51 (201)
T ss_pred             HHHHHHHHHH
Confidence            3444444433

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=82.95  E-value=0.43  Score=52.96  Aligned_cols=57  Identities=19%  Similarity=0.272  Sum_probs=45.9

Q ss_pred             CCccccccceeEEEEEEc-CeEEEEEEccC--CCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR-HMQVAIKMLHP--HSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~--~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ...||.||...||+.... .+.+|+|+...  ...+....|.+|+..| .++ .|.+||+||
T Consensus       366 lk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL-~KLkg~~~IIqL~  426 (677)
T KOG0596|consen  366 LKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALL-NKLKGHDKIIQLY  426 (677)
T ss_pred             HHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHH-HHhcCCceEEEEe
Confidence            457999999999999887 47788887733  3445578899999999 888 688999876

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=82.90  E-value=1.1e+02  Score=36.41  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=17.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH
Q 007740          354 VDDNLYDQLAQAMAEAENSRREAF  377 (591)
Q Consensus       354 ~~~~~~~~l~~~~~e~~~~r~e~~  377 (591)
                      .+.++.-++.+...+++-+|..-.
T Consensus       225 te~eLr~QvrdLtEkLetlR~kR~  248 (1243)
T KOG0971|consen  225 TEEELRAQVRDLTEKLETLRLKRA  248 (1243)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhh
Confidence            344688888888888887775443

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=82.65  E-value=51  Score=32.30  Aligned_cols=22  Identities=41%  Similarity=0.255  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 007740          358 LYDQLAQAMAEAENSRREAFEE  379 (591)
Q Consensus       358 ~~~~l~~~~~e~~~~r~e~~~~  379 (591)
                      ...++..+..+++....++..+
T Consensus        25 ~~~~~~~A~~~A~~i~~~A~~e   46 (201)
T PF12072_consen   25 NRKKLEQAEKEAEQILEEAERE   46 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777776666544

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=82.53  E-value=0.69  Score=49.59  Aligned_cols=59  Identities=27%  Similarity=0.341  Sum_probs=44.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~l  589 (591)
                      +.|...++||+|.|+.||++++.     ...||+|.+...+  ......+|++.| ..+ -|.|++++
T Consensus        36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L-~~~gG~~ni~~~  100 (418)
T KOG1167|consen   36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEML-YRLGGSDNIIKL  100 (418)
T ss_pred             hhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHH-HHhccchhhhcc
Confidence            44667789999999999999875     3689999986533  344678898888 666 45666654

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=82.22  E-value=32  Score=37.38  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=8.7

Q ss_pred             HhhcCCCcCCccc-cccceeE
Q 007740          525 GATHNFDPSLKIG-EGGYGSI  544 (591)
Q Consensus       525 ~aT~~F~~~~~iG-~G~~G~V  544 (591)
                      ..|+.|.-...|. .|-||++
T Consensus       266 ~ktNv~n~~F~I~~~G~fgtI  286 (447)
T KOG2751|consen  266 RKTNVFNATFHIWHDGEFGTI  286 (447)
T ss_pred             HhhhhhhheeeEeeccccccc
Confidence            4445554444443 2335544

>PTZ00121 MAEBL; Provisional

Probab=82.15  E-value=1.4e+02  Score=37.55  Aligned_cols=143  Identities=23%  Similarity=0.269  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007740          358 LYDQLAQAMAEAENSRREAF----------------EEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG  421 (591)
Q Consensus       358 ~~~~l~~~~~e~~~~r~e~~----------------~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~e  421 (591)
                      +|..-+...+|..+...|+.                +++.+.+.-++..+++.+++.+-.....+|.++..+.+.+-+.+
T Consensus      1600 ~~~~~~~~kae~~kk~ee~~kk~E~~kk~eeekKk~Eelkk~eeE~kkk~Ea~kK~EEE~kkraeEeaKk~EEekKKaEe 1679 (2084)
T PTZ00121       1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679 (2084)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          422 KLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRK  500 (591)
Q Consensus       422 k~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~~~  500 (591)
                      -..-+..++.+.+...+..+...+..++.....+-..+..++...-........+.+++-.+-.+.-..+.++-++..+
T Consensus      1680 ~kk~~ee~~k~~e~~kk~~ee~k~~~~~~k~~~e~~~~~e~~kk~eee~k~k~ee~kkk~ee~kkk~e~~~k~eeek~k 1758 (2084)
T PTZ00121       1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758 (2084)
T ss_pred             HhhhhHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhHHHHHH

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=82.07  E-value=55  Score=32.30  Aligned_cols=48  Identities=19%  Similarity=0.293  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          438 ELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQ  485 (591)
Q Consensus       438 el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~  485 (591)
                      +......+...+..++.........|...+......+.+++.+...+.
T Consensus        92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~  139 (221)
T PF04012_consen   92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK  139 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444455555555555555555555555555555555554443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK12705 hypothetical protein; Provisional

Probab=81.89  E-value=96  Score=34.96  Aligned_cols=18  Identities=39%  Similarity=0.381  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 007740          362 LAQAMAEAENSRREAFEE  379 (591)
Q Consensus       362 l~~~~~e~~~~r~e~~~~  379 (591)
                      ++++..|++.+++++..+
T Consensus        39 ~~~a~~~a~~~~~~~~~~   56 (508)
T PRK12705         39 LQEAQKEAEEKLEAALLE   56 (508)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345666666666655533

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=81.77  E-value=1.3  Score=43.96  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             EEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          553 QVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       553 ~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .||||.+..... .....|.+|+.++ ++++|||||+++
T Consensus        25 ~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   62 (257)
T cd05040          25 PVAVKCLKSDKLSDIMDDFLKEAAIM-HSLDHENLIRLY   62 (257)
T ss_pred             EEEEeecCCcccHHHHHHHHHHHHHH-hhcCCCCcccee

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=81.59  E-value=12  Score=36.51  Aligned_cols=90  Identities=21%  Similarity=0.308  Sum_probs=0.0

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLIC  125 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c  125 (591)
                      |++|++-|- +.|-.|+.||.+  .|..|+.|++..|......+..                       ..-++....+|
T Consensus         1 kv~v~~SGG-kDS~~al~~a~~--~G~~v~~l~~~~~~~~~~~~~h-----------------------~~~~e~~~~~A   54 (194)
T cd01994           1 KVVALISGG-KDSCYALYRALE--EGHEVVALLNLTPEEGSSMMYH-----------------------TVNHELLELQA   54 (194)
T ss_pred             CEEEEecCC-HHHHHHHHHHHH--cCCEEEEEEEEecCCCCccccc-----------------------ccCHHHHHHHH


Q ss_pred             HHcCCceEEEEEec------CChHHHHHHHHHHcCCCEEEEcc
Q 007740          126 RQMGVRAEKLDTES------ESTEKGILELISHYGIRKLVMGA  162 (591)
Q Consensus       126 ~~~gV~~e~~vie~------~~~~~~Ive~a~~~~idlIVmGs  162 (591)
                      ...||+...+.+.+      .+..+.|.+++++ +++.||-|+
T Consensus        55 ~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~   96 (194)
T cd01994          55 EAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVFGA   96 (194)
T ss_pred             HHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEECc

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=81.55  E-value=36  Score=29.85  Aligned_cols=90  Identities=20%  Similarity=0.186  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          399 ASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYK  478 (591)
Q Consensus       399 ~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~  478 (591)
                      +++....+-..+-.-++..|..+|....++..+++.+..-++.++.+.....+++.+++.++.++...+........++.
T Consensus         6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~   85 (107)
T PF09304_consen    6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELE   85 (107)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHH
Q 007740          479 KEQDELQMER  488 (591)
Q Consensus       479 ~~~~el~~~r  488 (591)
                      ..+.+-+..+
T Consensus        86 ~r~~k~~~dk   95 (107)
T PF09304_consen   86 SRLLKAQKDK   95 (107)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=81.31  E-value=82  Score=33.79  Aligned_cols=144  Identities=20%  Similarity=0.171  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHhHHHH
Q 007740          363 AQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG-------KLELERMKKQHDEV  435 (591)
Q Consensus       363 ~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~e-------k~~~~~~k~e~~~~  435 (591)
                      .+-..|+++||.|..--+....-|---+++|-++|-            |.+++..|.+.       ..--.+...+.+.+
T Consensus       359 RqHqRELekLreEKdrLLAEETAATiSAIEAMKnAh------------rEEmeRELeKsqSvnsdveaLRrQyleelqsv  426 (593)
T KOG4807|consen  359 RQHQRELEKLREEKDRLLAEETAATISAIEAMKNAH------------REEMERELEKSQSVNSDVEALRRQYLEELQSV  426 (593)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH------------HHHHHHHHHhhhccccChHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcc
Q 007740          436 MEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFF  515 (591)
Q Consensus       436 ~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~~~~~~~~~~~~~~~~~~  515 (591)
                      .++|+.+.+|-...-.+.+.+.+++..-++.++.-+..-+++....++|   ..+...++..++-...........+...
T Consensus       427 qRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQEL---nnRLaaEItrLRtlltgdGgGtGsplaq  503 (593)
T KOG4807|consen  427 QRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQEL---NNRLAAEITRLRTLLTGDGGGTGSPLAQ  503 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---hhHHHHHHHHHHHHhccCCCCCCCcccc


Q ss_pred             cccCHH
Q 007740          516 SDFSFS  521 (591)
Q Consensus       516 ~~~s~~  521 (591)
                      .+-.|+
T Consensus       504 gkdayE  509 (593)
T KOG4807|consen  504 GKDAYE  509 (593)
T ss_pred             Ccchhh

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=81.30  E-value=83  Score=33.85  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHhH
Q 007740          356 DNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAE---ELKRRKEFEEALANGKLELERMKKQH  432 (591)
Q Consensus       356 ~~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~e---e~~~rk~~E~~l~~ek~~~~~~k~e~  432 (591)
                      ..+..++.....++..++.++..-......++.+...+.........++.+   -.......+.++...+.++...+.++
T Consensus       140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l  219 (423)
T TIGR01843       140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAEL  219 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          433 DEVMEELQIALDQKSLLESQ-IAESDQTAKELEQKIISAVELLQNYKKEQDE  483 (591)
Q Consensus       433 ~~~~~el~~~~~~~~~l~~~-~~e~~~~~~ele~~~~~~~~~l~~~~~~~~e  483 (591)
                      +.+..++..++.+...+... ..+....+.++++++..+...+...+..++.
T Consensus       220 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~  271 (423)
T TIGR01843       220 EVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR  271 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=81.19  E-value=0.75  Score=41.20  Aligned_cols=43  Identities=12%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             cCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHH
Q 007740          532 PSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAY  577 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il  577 (591)
                      +...||.|+.|.||+|++. |..||||+.++..   ...+...+.+|
T Consensus        15 d~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i---~~~i~~Dl~~l   58 (119)
T PF03109_consen   15 DPEPLASASIAQVHRARLKDGEEVAVKVQRPGI---EEQIEADLRIL   58 (119)
T ss_pred             CcchhhheehhhheeeeecccchhhhhhcchHH---HHHHHHHHHHH

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=81.14  E-value=1.2e+02  Score=35.62  Aligned_cols=141  Identities=18%  Similarity=0.188  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007740          362 LAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQI  441 (591)
Q Consensus       362 l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~  441 (591)
                      +.+-..|+|+.|-.|....++.+..-+..-.-+|...++.....+.+...|----++..-|..++..|++++++.+++..
T Consensus       349 fddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~  428 (1265)
T KOG0976|consen  349 FDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDL  428 (1265)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 007740          442 ALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQ---MERDKAVKEAEELRKSR  502 (591)
Q Consensus       442 ~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~---~~r~~~~~e~~~~~~~~  502 (591)
                      +......++.|+....--..-.+...+.+..+..++-..++.++   ...++.-++.+.++...
T Consensus       429 mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen  492 (1265)
T KOG0976|consen  429 MGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAEN  492 (1265)
T ss_pred             HhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHH

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional

Probab=81.04  E-value=11  Score=41.73  Aligned_cols=102  Identities=20%  Similarity=0.234  Sum_probs=0.0

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc---CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS---GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~---~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      +.+|+|||-|. ..|...|.......   .|-.|+++||.....                           ....+....
T Consensus        15 ~~~ilvavSGG-~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr---------------------------~~s~~~~~~   66 (436)
T PRK10660         15 SRQILVAFSGG-LDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS---------------------------PNADSWVKH   66 (436)
T ss_pred             CCeEEEEecCC-HHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC---------------------------cchHHHHHH


Q ss_pred             HHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCC----------CEEEEccCCCchhhHHhc
Q 007740          121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGI----------RKLVMGAAADKHYKKKMM  173 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~i----------dlIVmGs~g~~~~~R~l~  173 (591)
                      ...+|.+.||++....+........+-..|.+...          +.|++|-|.+....-+|+
T Consensus        67 ~~~~~~~l~i~~~~~~~~~~~~~~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~ET~L~  129 (436)
T PRK10660         67 CEQVCQQWQVPLVVERVQLDQRGLGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQCETFLL  129 (436)
T ss_pred             HHHHHHHcCCcEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHHHHHHH

>PTZ00121 MAEBL; Provisional

Probab=81.03  E-value=1.6e+02  Score=37.05  Aligned_cols=151  Identities=16%  Similarity=0.191  Sum_probs=0.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHh
Q 007740          355 DDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIR--RAKASESLYAEELKRRKEFEEALANG-KLELERMKKQ  431 (591)
Q Consensus       355 ~~~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~--~a~~~e~~~~ee~~~rk~~E~~l~~e-k~~~~~~k~e  431 (591)
                      ++.....-.....++++.......+-.++.++.+.+.++..  .++.+|.....|..++.+.+.+...+ +.+.++...+
T Consensus      1161 EEaRr~EEaRraEeArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~EE~RraEEaRK~aE 1240 (2084)
T PTZ00121       1161 EDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240 (2084)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007740          432 HDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEA  505 (591)
Q Consensus       432 ~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~~~~~~~~  505 (591)
                      -.+..++.+.+.+....-+.++++..++..+.+.....-...++-+..++..-...+....+.+++.++.....
T Consensus      1241 EAkraEEeR~~EE~Rk~Eear~a~~A~r~aa~k~Ee~RrAee~~k~Ee~r~a~~~kk~ee~kkaee~~kk~eea 1314 (2084)
T PTZ00121       1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314 (2084)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	591
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-05
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		2e-05
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		3e-05
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		5e-05
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-04
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-04

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
           F  FSF E++  T+NFD         K+GEGG+G +YKG + +  VA+K L
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL 62

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
           F  FSF E++  T+NFD         K+GEGG+G +YKG + +  VA+K L
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL 62

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
           F  FSF E++  T+NFD         K+GEGG+G +YKG + +  VA+K L
Sbjct: 6   FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL 56

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 515 FSDFSFSEIEGATHNFD------PSLKIGEGGYGSIYKGLLRHMQVAIKML 559
           F  FSF E++  T+NFD         K GEGG+G +YKG + +  VA+K L
Sbjct: 3   FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKL 53

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 501 SRKEASSSSHMPQFFS-DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKM 558
           S  +A SSS++  F S      ++E AT+NFD    IG G +G +YKG+LR   +VA+K 
Sbjct: 11  SINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
Query: 559 LHPHSLQG 566
             P S QG
Sbjct: 71  RTPESSQG 78

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 501 SRKEASSSSHMPQFFS-DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKM 558
           S  +A SSS++  F S      ++E AT+NFD    IG G +G +YKG+LR   +VA+K 
Sbjct: 11  SINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
Query: 559 LHPHSLQG 566
             P S QG
Sbjct: 71  RTPESSQG 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	591
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	7e-17
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-16
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-06
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	7e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	7e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-06
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	8e-06
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-05
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-05
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-05
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	3e-05
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-05
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	7e-05
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	2e-04
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-04
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-04
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-04
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-04
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-04
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-04
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-04
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-04
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	5e-04
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-04
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	6e-04
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	6e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	7e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	8e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	8e-04
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	9e-04
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	9e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 96.5 bits (241), Expect = 4e-22
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 501 SRKEASSSSHMPQFFS-DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKM 558
           S  +A SSS++  F S      ++E AT+NFD    IG G +G +YKG+LR   +VA+K 
Sbjct: 11  SINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70

Query: 559 LHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
             P S QG  EF+ E+    SF  H +LV
Sbjct: 71  RTPESSQGIEEFETEIETL-SFCRHPHLV 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  100 bits (249), Expect = 5e-22
 Identities = 103/668 (15%), Positives = 197/668 (29%), Gaps = 216/668 (32%)

Query: 7   VPAIAQGVDSVRCPDIQ--MAGITSSR--RGIVEEPVASVIEDKIYVAVAKQVKESKSVL 62
             A     D   C D+Q     I S      I+    A                     L
Sbjct: 26  EDAFVDNFD---CKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLR------------L 67

Query: 63  LWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQ------AYREIERQDMHN 116
            W L +   + +    V    ++      KF  S ++ E+ Q       Y E +R  ++N
Sbjct: 68  FWTLLSKQ-EEMVQKFVEEVLRI----NYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYN 121

Query: 117 HLDMCLLICRQMGV-RAEKLDTESESTEKGILELISH-----YGIR---K--LVMGAAAD 165
                  +  +  V R +          + +LEL         G+    K  + +     
Sbjct: 122 DNQ----VFAKYNVSRLQPY----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 166 KHYKKKM------MDL---KSKKAISVRQQAPASCHIWFICNGNLIYTREGSLDGIDPEI 216
              + KM      ++L    S + +    Q              L+Y  + +      + 
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-------------KLLYQIDPNWT-SRSDH 219

Query: 217 SSPSFQASHNTENR---------HPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFD 267
           SS      H+ +           + NCL    +VL +         VQ+      + N  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLN---------VQNAKA-WNAFNLS 265

Query: 268 RNVGNVMTSQD-SIGGLSSPASRSDAEVSSDECTTGRSTSQGSLSSCSSRGVIDVAMIPL 326
             +  ++T++   +    S A+ +   +S D  +   +  +   S       +D      
Sbjct: 266 CKI--LLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDE-VKSLLLK--YLDCR---- 314

Query: 327 IRTEGVSTLPPSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKA 386
                   LP   E L ++P                  ++            E++R G A
Sbjct: 315 -----PQDLPR--EVLTTNP---------------RRLSI----------IAESIRDGLA 342

Query: 387 --------EKDAIESIRRAKAS-ESLYAEELKRRKEFEEALA----NGKLE---LERM-- 428
                     D + +I   ++S   L   E ++   F+  L+    +  +    L  +  
Sbjct: 343 TWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKM--FDR-LSVFPPSAHIPTILLSLIWF 397

Query: 429 KKQHDEVMEELQIALDQKSLLESQIAES---------DQTAK-----ELEQKIISAVELL 474
                +VM  +   L + SL+E Q  ES         +   K      L + I+    + 
Sbjct: 398 DVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 475 QNYKKEQDELQMERD-----------KAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEI 523
           + +  + D +    D           K ++  E +          +     F DF F  +
Sbjct: 457 KTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERM----------TLFRMVFLDFRF--L 503

Query: 524 EGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFH 583
           E          KI          G + +    +K   P+      ++++ V A   F+  
Sbjct: 504 EQ---------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 584 F--NLVDS 589
              NL+ S
Sbjct: 555 IEENLICS 562

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 9e-04
 Identities = 65/508 (12%), Positives = 137/508 (26%), Gaps = 142/508 (27%)

Query: 24  MAGITSSRRG--------IVEEPVASVIEDKIY-VAVAKQVKESKSVLLWALQNSGGKRI 74
           + G      G         +   V   ++ KI+ + +      S   +L  LQ       
Sbjct: 158 VLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNC--NSPETVLEMLQK------ 204

Query: 75  CIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVR--- 131
            +++   P        +      +   +    R + +   + +   CLL+     V+   
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYEN---CLLVLL--NVQNAK 257

Query: 132 -AEKLDTESE----STEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSK----KAIS 182
                +   +    +  K + + +S      + +   +      ++  L  K    +   
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 183 VRQQA----P-------ASCHIWFICNGNLIY--------TREGSLDGIDPEISSPSFQA 223
           + ++     P        S         N  +          E SL+ ++P         
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-------- 369

Query: 224 SHNTENRHPNCLRSQSVVLRHNRPMKLTNPVQDLFHRVRSMNFDRNVGNVMTSQDSIGGL 283
               E R        SV                         F  +  ++ T   S+  +
Sbjct: 370 ----EYRK--MFDRLSV-------------------------FPPSA-HIPTILLSL--I 395

Query: 284 SSPASRSDAEVSSDECTTGRSTSQGSLSSCSSRGVIDVAMIPLIRTEGVSTL-------- 335
                +SD  V  ++     S  +      S+  +  + +   ++ E    L        
Sbjct: 396 WFDVIKSDVMVVVNKLHK-YSLVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 336 -PPSKEDLQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRR-EAFEEA---LR--RGKAEK 388
             P   D     P  LD       Y  +   +   E+  R   F       R    K   
Sbjct: 454 NIPKTFDSDDLIPPYLDQYF----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 389 DAIESIRRAKASESL-----YAEELKRRKEFEEALANGKLELERMKKQHDEVMEE----- 438
           D+           +L     Y   +       E L N    +     + +E +       
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---AILDFLPKIEENLICSKYTD 566

Query: 439 -LQIALDQKSLLESQIAESDQTAKELEQ 465
            L+IAL  +   +  I E  +  K++++
Sbjct: 567 LLRIALMAE---DEAIFE--EAHKQVQR 589

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 81.1 bits (201), Expect = 7e-17
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGP-SEFQQEVG 575
           FS  E++ A+ NF     +G GG+G +YKG L     VA+K L     QG   +FQ EV 
Sbjct: 20  FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVE 79

Query: 576 AYESFIFHFNLV 587
              S   H NL+
Sbjct: 80  MI-SMAVHRNLL 90

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 11/80 (13%)

Query: 518 FSFSEIEGATHNFDPSL------KIGEGGYGSIYKGLLRHMQVAIKMLHPH----SLQGP 567
           FSF E++  T+NFD         K+GEGG+G +YKG + +  VA+K L       + +  
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74

Query: 568 SEFQQEVGAYESFIFHFNLV 587
            +F QE+    +   H NLV
Sbjct: 75  QQFDQEIK-VMAKCQHENLV 93

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 517 DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGA 576
           + + SE      N      IG G YG++YKG L    VA+K+    + Q    F  E   
Sbjct: 2   EAAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQ---NFINEKNI 58

Query: 577 YE-SFIFHFNLVDSFI 591
           Y    + H N+   FI
Sbjct: 59  YRVPLMEHDNIA-RFI 73

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 360  DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
            +++   +A  +    E   E   R + E++  + ++  K        +L+ + E EE  A
Sbjct: 912  EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE-EEEAA 970

Query: 420  NGKLELERMKKQHDEVMEELQIALD-----------QKSLLESQIAESDQTAKELEQKII 468
              KL+LE  K   D  +++++  +            ++ LLE ++++      E E+K  
Sbjct: 971  RQKLQLE--KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 469  SAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKE 504
            +  +L   ++    EL++   K  K  +EL K +++
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 4/148 (2%)

Query: 361  QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKAS----ESLYAEELKRRKEFEE 416
                 + + E+      ++  +  K  K   E +     +    E       K + + E 
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 417  ALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQN 476
             ++  ++ L++ +K   E+ +  +    + S L  QIAE      EL+ ++    E LQ 
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099

Query: 477  YKKEQDELQMERDKAVKEAEELRKSRKE 504
                 ++   +++ A+K+  EL     +
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISD 1127

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 26/144 (18%), Positives = 56/144 (38%)

Query: 363  AQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGK 422
             Q   E    + +   E     +AE+  +    + +  E +  E   R +E EE     +
Sbjct: 888  TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ 947

Query: 423  LELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQD 482
             E ++M++Q  ++ E+L+     +  L+ +   +D   K++E  I+   +      KE+ 
Sbjct: 948  AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007

Query: 483  ELQMERDKAVKEAEELRKSRKEAS 506
             L+           E  +  K  +
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLT 1031

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 360  DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEA-- 417
            +     + +      E   +       E++  +++ + K        EL+ R + EE   
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

Query: 418  --LANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQ 475
              L   K +LE       E + ELQ    Q + L++Q+A+ ++  +    ++        
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQ---AQIAELKAQLAKKEEELQAALARLEDETSQKN 1112

Query: 476  NYKKEQDELQMERDKAVKEAEELRKSRKEA 505
            N  K+  EL+       ++ E  + +R +A
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 24/161 (14%), Positives = 63/161 (39%), Gaps = 7/161 (4%)

Query: 356  DNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFE 415
              L ++++           +A      + K E    E   R K  E    E  K +++ E
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 416  EALANGKLELERMKKQHDEVMEELQIALDQKSLLESQI-------AESDQTAKELEQKII 468
               ++   ++  ++ Q  E+  +L    ++     +++         + +  +ELE  I 
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 469  SAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSS 509
               E L++ K  +++ + ++    +E E L+   ++   ++
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 368  EAENSRREAFEEALRRGKAE-KDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELE 426
            + E   R+  E+  R+ + E  D  E I   +A  +    +L + KE E   A  +LE E
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK-KEEELQAALARLEDE 1107

Query: 427  R------------MKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELL 474
                         ++    ++ E+L+     ++  E Q  +  +  + L+ ++    E  
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL----EDT 1163

Query: 475  QNYKKEQDELQMERDKAVKE 494
             +    Q EL+    K   +
Sbjct: 1164 LDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 20/127 (15%), Positives = 51/127 (40%)

Query: 379 EALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEE 438
             L+  + E++        + ++    +     KE E+       E   ++++     E 
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 439 LQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEEL 498
              A + +  L ++  E ++   E+E +I    E  Q  + E+ ++Q +     ++ EE 
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967

Query: 499 RKSRKEA 505
             +R++ 
Sbjct: 968 EAARQKL 974

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 501 SRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLH 560
                 SS        D     +   +           G +G ++K  L +  VA+K+  
Sbjct: 3   HHHHHHSSG------VDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFP 56

Query: 561 PHSLQGPSEFQQEVGAYESFIFHFNLVDSFI 591
               Q   + + EV +    + H N++  FI
Sbjct: 57  IQDKQS-WQNEYEVYSL-PGMKHENIL-QFI 84

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 24/149 (16%), Positives = 61/149 (40%), Gaps = 1/149 (0%)

Query: 361  QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRR-KEFEEALA 419
             L   +      RR   +  L++ K E  ++E  ++          +L+R+  E  +   
Sbjct: 886  TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945

Query: 420  NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
            +   ++  ++  +    E+L+  +++  + E +   +      L+++I    + L   + 
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Query: 480  EQDELQMERDKAVKEAEELRKSRKEASSS 508
            E+  ++   DK   E E+L    KE ++ 
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELKEQNTL 1034

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 14/158 (8%)

Query: 361  QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
            +      + E    E +++       E   ++  R+       Y   L++    E   + 
Sbjct: 903  KRELKKLKIEARSVERYKKL--HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960

Query: 421  GKLEL----ERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQN 476
               +L    ER++       EE + A ++   L+ +IA+  +   + + +  +  E    
Sbjct: 961  ETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

Query: 477  YKKEQDELQMERDKAV----KEAEELRKSRKEASSSSH 510
            YK E ++L  E  +       E EEL +   + +    
Sbjct: 1017 YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 24/147 (16%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 361  QLAQAMAEAENSRREAFEEALRRGKAEKDAIES-IRRAKASESLYAEELKRRKEFEEALA 419
            +  +++   ++ R         R       ++   RR  A   L   +++ R        
Sbjct: 863  REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922

Query: 420  NGKLE--LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNY 477
            +  LE  + +++++ DE  +E +  L++ + LE   +   +  +   +++  + E  +N 
Sbjct: 923  HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982

Query: 478  KKEQDELQMERDKAVKEAEELRKSRKE 504
                  LQ E  K  KE  + +  +K 
Sbjct: 983  TNRVLSLQEEIAKLRKELHQTQTEKKT 1009

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 14/173 (8%)

Query: 342 LQSSPPSVLDGSVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASE 401
           +Q      +       + D      A           + + R       I+   R   + 
Sbjct: 822 IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI-IIQKHVRGWLAR 880

Query: 402 SLYAEELKRR----KEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESD 457
             Y   LK        +   +A  K EL+++K +   V    ++       LE++I +  
Sbjct: 881 VHYHRTLKAIVYLQCCYRRMMA--KRELKKLKIEARSVERYKKL----HIGLENKIMQLQ 934

Query: 458 QTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSH 510
           +   E  ++      LL+     +     E +K   + E LR S +EA ++++
Sbjct: 935 RKIDEQNKEY---KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN 984

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 14/145 (9%), Positives = 50/145 (34%), Gaps = 7/145 (4%)

Query: 364 QAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKL 423
           +        +    ++ +R   A      +++     +  Y   + +R+  +  +    +
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916

Query: 424 E-LERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQD 482
           E  +++    +  + +LQ  +D+      +     +    LE          +  + + +
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDE---QNKEYKSLLEKMNNLEITY---STETEKLRSDVE 970

Query: 483 ELQMERDKAVKEAEELRKSRKEASS 507
            L+M  ++A      +   ++E + 
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAK 995

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 364  QAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKL 423
            +     E  +  +  E LR  + E     +   +        EE+ + ++        K 
Sbjct: 955  EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ------EEIAKLRKELHQTQTEKK 1008

Query: 424  ELERMKKQHDEVMEELQIALD-QKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQD 482
             +E    ++    E+L   L  Q +LL+++  E ++   +  ++I   +E  +   +E  
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME--KKLVEETK 1066

Query: 483  ELQMERDKAVKEAE 496
            +L+++ +      +
Sbjct: 1067 QLELDLNDERLRYQ 1080

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPS----EFQQEVGAYESFIFHFNLV 587
            IG GG+G +Y+      +VA+K       +  S      +QE   + + + H N++
Sbjct: 14  IIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLF-AMLKHPNII 69

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 25/145 (17%), Positives = 55/145 (37%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
           ++LA A+ + E + + A E        E  A +   + +  E    E     ++ +    
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
               +L  ++   +   E  +++  + + LE +I       K LE +     +    Y++
Sbjct: 164 EVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEE 223

Query: 480 EQDELQMERDKAVKEAEELRKSRKE 504
           E   L  +  +A   AE   +S  +
Sbjct: 224 EIKVLSDKLKEAETRAEFAERSVTK 248

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 32/143 (22%), Positives = 66/143 (46%)

Query: 356 DNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFE 415
           +    QL +A   AE++ R+  E A +    E D   +  RA+ SE   AE  +  K   
Sbjct: 142 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVT 201

Query: 416 EALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQ 475
             L + + + E+  ++ D+  EE+++  D+    E++   ++++  +LE+ I    + L 
Sbjct: 202 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 261

Query: 476 NYKKEQDELQMERDKAVKEAEEL 498
             K +   +  E D A+ +   +
Sbjct: 262 AQKLKYKAISEELDHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 19/152 (12%), Positives = 63/152 (41%)

Query: 356 DNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFE 415
           +N  D+  +A A+ + +   + +        +K    +            +  ++ +  E
Sbjct: 16  ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE 75

Query: 416 EALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQ 475
           +   + + ++  + ++     EEL  A ++ +    ++ E+++ A E E+ +       Q
Sbjct: 76  KKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135

Query: 476 NYKKEQDELQMERDKAVKEAEELRKSRKEASS 507
             +++ +  +++  +A   AE+  +  +E + 
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 22/146 (15%), Positives = 50/146 (34%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
            +  +   + E    +  E       A++   E  R+    ES      +R +  E   A
Sbjct: 132 SRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA 191

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
             + E++ +      +  + +    ++   E +I       KE E +   A   +   +K
Sbjct: 192 ELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251

Query: 480 EQDELQMERDKAVKEAEELRKSRKEA 505
             D+L+ E      + + + +    A
Sbjct: 252 SIDDLEDELYAQKLKYKAISEELDHA 277

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 22/148 (14%), Positives = 54/148 (36%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           ++     + EN+   A E    +  AE  + +      + +           ++ EAL +
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE 480
            + +LE  +K+  +   ++     +  L E ++  + +      QK+  A +     ++ 
Sbjct: 67  AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126

Query: 481 QDELQMERDKAVKEAEELRKSRKEASSS 508
              ++    K  ++ E      KEA   
Sbjct: 127 MKVIESRAQKDEEKMEIQEIQLKEAKHI 154

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 20/151 (13%), Positives = 55/151 (36%)

Query: 357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEE 416
              D+L +     ++++ +      +   AE D     RR +  E       +R     +
Sbjct: 52  ATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQ 111

Query: 417 ALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQN 476
            L   +   +  ++    +    Q   ++  + E Q+ E+   A++ ++K       L  
Sbjct: 112 KLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVI 171

Query: 477 YKKEQDELQMERDKAVKEAEELRKSRKEASS 507
            + + +  +   + +  +  EL +  K  ++
Sbjct: 172 IESDLERAEERAELSEGKCAELEEEIKTVTN 202

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           ++ ++ A+ +  + E  E  L+  K   +  +  R+ +             +  EE    
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD--RKYEEVARKLVIIESDLERAEERAEL 185

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE 480
            + +   ++++   V   L+    Q      +  + ++  K L  K+  A    +  ++ 
Sbjct: 186 SEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS 245

Query: 481 QDELQMERDKAVKEAEELRKSRKEAS 506
             +L+   D    E    +   K  S
Sbjct: 246 VTKLEKSIDDLEDELYAQKLKYKAIS 271

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 431 QHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIIS-AVELLQNYKKEQDELQMERD 489
           Q D + +E +     +     ++ E D  +K +EQ+    A + L+ + + Q E Q+E++
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-QVEKN 134

Query: 490 KAV--KEAEELRKSRKE 504
           K       +   +    
Sbjct: 135 KINNRIADKAFYQQPDA 151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 46.3 bits (109), Expect = 6e-06
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 33/110 (30%)

Query: 361 QLAQAMAEAENSR--REAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEAL 418
           Q  +   E E+ R  RE   + L     E DA   +           +E +     E+A 
Sbjct: 76  QADRLTQEPESIRKWREEQRKRL----QELDAASKVME---------QEWR-----EKA- 116

Query: 419 ANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKII 468
              K +LE   ++  E +E        K+ + ++IA+     ++ +  II
Sbjct: 117 ---KKDLEEWNQRQSEQVE--------KNKINNRIAD-KAFYQQPDADII 154

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 492 VKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH 551
           +K              ++    F       +++    + +   KIG G +G++++     
Sbjct: 1   MKHHHHHHPMSDYDIPTTENLYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHG 60

Query: 552 MQVAIKMLHPHSLQGPS--EFQQEVGAYESFIFHFNLV 587
             VA+K+L           EF +EV      + H N+V
Sbjct: 61  SDVAVKILMEQDFHAERVNEFLREVAIM-KRLRHPNIV 97

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
            +G G +G + K   R   VAIK +   S +    F  E+    S + H N+V
Sbjct: 15  VVGRGAFGVVCKAKWRAKDVAIKQIESESERK--AFIVEL-RQLSRVNHPNIV 64

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 8/140 (5%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           Q     +EAE +R+E  E      +A   A+ES   AKA     AE    R E E ++  
Sbjct: 691 QKILDQSEAEKARKELLEL-----EAMSMAVESTGNAKAEAESRAEA--ARIEGEGSVLQ 743

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQT-AKELEQKIISAVELLQNYKK 479
            KL+ + +  + +  +E ++   + + +      E + + A++L        + +     
Sbjct: 744 AKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALG 803

Query: 480 EQDELQMERDKAVKEAEELR 499
                 +       + + L+
Sbjct: 804 PGTIRDLAVAGPEMQVKLLQ 823

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPS--EFQQEV 574
           K+ E   G ++KG  +   + +K+L           +F +E 
Sbjct: 17  KLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEEC 58

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYE-SFIFHFNLVDSFI 591
            +G+G YG +++G  +   VA+K+      +    + +E   Y    + H N++  FI
Sbjct: 15  CVGKGRYGEVWRGSWQGENVAVKIFSSRDEK---SWFRETELYNTVMLRHENIL-GFI 68

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYE-SFIFHFNLVDSFI 591
           +IG+G YG ++ G  R  +VA+K+           + +E   Y+   + H N++  FI
Sbjct: 44  QIGKGRYGEVWMGKWRGEKVAVKVFFTTEEA---SWFRETEIYQTVLMRHENIL-GFI 97

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 480 EQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEG 539
           E   L           ++L      + S S +P          I            IG+G
Sbjct: 1   EDPSLDRPFISEGTTLKDLIYDMTTSGSGSGLPLLVQRTIARTIVLQE-------SIGKG 53

Query: 540 GYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYE-SFIFHFNLVDSFI 591
            +G +++G  R  +VA+K+      +    + +E   Y+   + H N++  FI
Sbjct: 54  RFGEVWRGKWRGEEVAVKIFSSREER---SWFREAEIYQTVMLRHENIL-GFI 102

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 18/144 (12%), Positives = 50/144 (34%), Gaps = 9/144 (6%)

Query: 370 ENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANG---KLELE 426
           +    + +   L        A   +      E + A+         E ++     K E E
Sbjct: 124 KTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYE 183

Query: 427 RMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVEL------LQNYKKE 480
            +K++ +++ +    ++  +  +  ++        E+  +              +    E
Sbjct: 184 ELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNE 243

Query: 481 QDELQMERDKAVKEAEELRKSRKE 504
            ++L+ E  K + +  +++K RKE
Sbjct: 244 TEQLKAEEKKILNQFLKIKKKRKE 267

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPS--EFQQEVGAYESFIFHFNLV 587
            IG+G +G +Y G   H +VAI+++            F++EV AY     H N+V
Sbjct: 40  LIGKGRFGQVYHGRW-HGEVAIRLIDIERDNEDQLKAFKREVMAY-RQTRHENVV 92

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 535 KIGEGGYGSIYKG--LLRHMQVAIKMLHPHSLQGPS-------EFQQEVGAYESFIFHFN 585
           +IG+GG+G ++KG  +     VAIK L     +G +       EFQ+EV    S + H N
Sbjct: 26  QIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIM-SNLNHPN 84

Query: 586 LV 587
           +V
Sbjct: 85  IV 86

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 45.3 bits (106), Expect = 4e-05
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 508 SSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGP 567
           S   P  FS          T       KIGEG +G +++ +  H  VAIK++        
Sbjct: 6   SQKGPVPFSHCL------PTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLV 59

Query: 568 SEFQQ 572
           +   Q
Sbjct: 60  NGSHQ 64

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPS--EFQQEVGAYESFIFHFNLV 587
           +IG G +G++YKG   H  VA+KML+  +        F+ EVG       H N++
Sbjct: 31  RIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVL-RKTRHVNIL 83

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 535 KIGEGGYGSIYKGLLR------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G+G +GS+               VA+K L         +FQ+E+   ++      +V
Sbjct: 30  QLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL-HSDFIV 87

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 26/145 (17%), Positives = 60/145 (41%)

Query: 361 QLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALAN 420
           ++ Q   + E    + +       + +K    +  RA+ SE   AE  +  K     L +
Sbjct: 1   RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60

Query: 421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKE 480
            + + E+  ++ D+  EE+++  D+    E++   ++++  +LE+ I    + L   K +
Sbjct: 61  LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120

Query: 481 QDELQMERDKAVKEAEELRKSRKEA 505
              +  E  +   + EEL       
Sbjct: 121 YKAISEEMKQLEDKVEELLSKNYHL 145

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 9/48 (18%)

Query: 535 KIGEGGYGSIYKGLLR---------HMQVAIKMLHPHSLQGPSEFQQE 573
            +G+G +  I+KG+ R           +V +K+L          F + 
Sbjct: 15  SLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEA 62

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 535 KIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G G +G +  G  R    VAIKM+   S+    EF +E     +   H  LV
Sbjct: 31  ELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-EDEFIEEAKVMMNLS-HEKLV 82

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 535 KIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           +IG G +G ++ G      +VAIK +   ++    +F +E         H  LV
Sbjct: 15  EIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLS-HPKLV 66

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 535 KIGEGGYGSIYKGLLR----HMQVAIKMLHP-HSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G G +GS+ +G+ R     + VAIK+L          E  +E         +  +V
Sbjct: 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD-NPYIV 399

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 535 KIGEGGYGSIYKGLLR----HMQVAIKMLHP-HSLQGPSEFQQEVGAYESFIFHFNLV 587
            IGEG +G + K  ++     M  AIK +    S     +F  E+        H N++
Sbjct: 32  VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
            IG+G +G +  G  R  +VA+K +   +      F  E         H NLV
Sbjct: 28  TIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--AQAFLAEASVMTQLR-HSNLV 77

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 535 KIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G G +G +  G  +    VA+KM+   S+    EF QE         H  LV
Sbjct: 15  ELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS-EDEFFQEAQTMMKLS-HPKLV 66

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 534 LKIGEGGYGSIYKGLLRH----MQVAIKMLHP-HSLQGPSEFQQEVGAYESFIFHFNLV 587
           +++G G +GS+ +G+ R     + VAIK+L          E  +E         +  +V
Sbjct: 16  IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD-NPYIV 73

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 535 KIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEV 574
           ++GEG +G ++             M VA+K L   +L    +FQ+E 
Sbjct: 22  ELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREA 68

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 535 KIGEGGYGSIYKGLLR------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G+G +GS+               VA+K L   + +   +F++E+   +S   H N+V
Sbjct: 48  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHDNIV 105

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 535 KIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQGPSEFQQEV 574
           ++GEG +G ++     +       M VA+K L   S     +FQ+E 
Sbjct: 48  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREA 94

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 535 KIGEGGYGSIYKGLLR------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G+G +GS+               VA+K L   + +   +F++E+   +S   H N+V
Sbjct: 17  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHDNIV 74

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 41.7 bits (96), Expect = 6e-04
 Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 8/166 (4%)

Query: 355 DDNLYDQLAQAMAEAENSRREAFEEALR-RGKAEKDAIESIRRAKASESLYAEELKRRKE 413
           +   Y +  + + +      +     L  R + EK   + +           E+  +   
Sbjct: 20  EVGNYKRTVKRIDDGHRLCSD-LMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGT 78

Query: 414 FEEALANGKLELERMKKQHDEVMEELQ------IALDQKSLLESQIAESDQTAKELEQKI 467
            E+A      E ER+ + H EV   L       I   QK     Q+    +  KE E   
Sbjct: 79  VEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGF 138

Query: 468 ISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQ 513
             A +      KE +  +     A KE +        + +   +  
Sbjct: 139 RKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNP 184

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 535 KIGEGGYGSIYKGLLR--HMQVAIKMLHPH-SLQGPSEFQQE 573
           +IG G +G ++ G LR  +  VA+K           ++F QE
Sbjct: 121 QIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQE 162

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 26/174 (14%), Positives = 75/174 (43%), Gaps = 1/174 (0%)

Query: 337 PSKEDLQSSPPSVLDG-SVDDNLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIR 395
           P +E++++   S   G  +       L +   E      +A E      K+++   ++I 
Sbjct: 417 PLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAIL 476

Query: 396 RAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAE 455
           +   + +   +E++  +   E+       L  M+++++++ME+ + +  +     ++  E
Sbjct: 477 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME 536

Query: 456 SDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEASSSS 509
           +D+     EQ+   A++L +  +  ++  Q E      E ++L+   +   + +
Sbjct: 537 NDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)

Query: 360 DQLAQAMAEAENSRREAFE---------EALRRGKAE-KDAIESIRRAKASESLYAEELK 409
                 + +A  +  +  E           L + + E   AI S   AK  +   +E + 
Sbjct: 499 TNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQG--SEVVN 556

Query: 410 RRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIIS 469
             K     L   K E E ++     V  ++          +  I E   +  EL++    
Sbjct: 557 VLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGG 616

Query: 470 AVELLQNYKKEQDELQMERDKAVKEAEELRKSRKEAS 506
               +Q   K+Q+ L      + +E  ++++S  EA+
Sbjct: 617 LTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEAN 653

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 535 KIGEGGYGSIYKGLLRH-----MQVAIKMLHP-HSLQGPSEFQQEVGAYESFIFHFNLV 587
            +GEG +G +Y+G+  +     + VA+K      +L    +F  E    ++   H ++V
Sbjct: 19  ILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLD-HPHIV 76

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 535 KIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G G +G ++ G    H +VA+K L   S+  P  F  E    +    H  LV
Sbjct: 20  RLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS-PDAFLAEANLMKQLQ-HQRLV 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	591
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	99.86
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	99.86
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	99.85
3fg9_A	156	Protein of universal stress protein USPA family; A	99.84
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	99.84
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	99.83
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	99.82
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.82
2z08_A	137	Universal stress protein family; uncharacterized c	99.81
3dlo_A	155	Universal stress protein; unknown function, struct	99.81
3tnj_A	150	Universal stress protein (USP); structural genomic	99.8
3fdx_A	143	Putative filament protein / universal stress PROT;	99.79
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	99.75
3olq_A	319	Universal stress protein E; structural genomics, P	99.7
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	99.7
3loq_A	294	Universal stress protein; structural genomics, PSI	99.69
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	99.69
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.68
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	99.67
3olq_A	319	Universal stress protein E; structural genomics, P	99.65
3loq_A	294	Universal stress protein; structural genomics, PSI	99.64
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	99.63
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.63
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	99.46
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.78
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.76
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	98.69
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.6
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.56
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.49
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	98.48
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	98.46
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	98.45
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.43
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.42
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	98.42
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	98.4
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.37
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	98.36
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	98.33
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	98.26
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	98.21
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	98.2
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	98.05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.04
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	98.02
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.01
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	98.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	98.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	97.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	97.96
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	97.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	97.95
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.94
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	97.92
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	97.91
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	97.91
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	97.89
3uqc_A	286	Probable conserved transmembrane protein; structur	97.88
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	97.87
3soc_A	322	Activin receptor type-2A; structural genomics cons	97.87
3o0g_A	292	Cell division protein kinase 5; kinase activator c	97.86
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	97.85
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	97.85
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	97.85
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	97.85
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	97.84
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	97.84
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	97.83
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.83
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	97.83
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	97.82
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	97.81
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	97.81
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	97.8
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	97.79
3niz_A	311	Rhodanese family protein; structural genomics, str	97.79
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	97.79
3rp9_A	458	Mitogen-activated protein kinase; structural genom	97.78
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	97.78
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	97.78
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	97.78
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	97.78
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	97.77
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	97.77
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	97.75
3ork_A	311	Serine/threonine protein kinase; structural genomi	97.75
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	97.74
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	97.74
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	97.74
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	97.74
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	97.74
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	97.74
3q4u_A	301	Activin receptor type-1; structural genomics conso	97.74
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	97.74
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	97.74
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	97.74
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	97.73
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	97.73
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	97.73
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	97.71
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	97.7
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	97.7
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	97.7
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	97.7
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	97.7
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	97.69
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	97.69
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	97.68
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	97.68
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.68
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	97.68
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	97.68
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	97.68
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	97.67
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	97.67
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	97.67
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	97.67
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	97.67
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	97.67
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	97.66
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	97.66
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	97.66
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	97.66
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	97.66
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	97.65
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	97.65
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	97.65
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	97.65
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	97.65
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	97.65
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	97.65
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	97.65
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	97.64
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	97.64
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	97.64
3bhy_A	283	Death-associated protein kinase 3; death associate	97.64
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.63
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	97.63
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	97.63
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	97.63
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	97.63
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	97.63
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	97.62
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	97.62
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	97.62
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	97.62
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	97.62
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	97.61
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	97.61
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	97.61
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	97.6
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	97.6
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	97.59
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	97.59
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	97.58
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	97.58
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	97.58
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.58
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	97.58
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	97.57
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	97.57
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	97.57
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	97.57
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	97.57
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	97.56
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	97.56
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	97.56
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	97.56
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	97.56
3pls_A	298	Macrophage-stimulating protein receptor; protein k	97.55
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	97.55
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	97.54
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	97.54
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	97.54
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	97.53
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	97.53
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	97.53
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	97.53
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	97.52
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	97.52
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	97.52
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	97.52
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	97.52
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	97.52
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	97.52
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	97.51
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	97.51
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	97.51
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	97.51
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	97.51
2a19_B	284	Interferon-induced, double-stranded RNA-activated	97.5
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	97.5
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	97.5
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	97.49
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	97.49
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	97.49
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	97.49
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	97.48
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	97.48
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	97.48
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	97.47
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	97.47
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	97.47
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	97.46
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	97.46
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	97.45
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	97.45
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	97.44
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	97.44
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	97.44
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	97.44
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	97.43
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	97.43
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	97.41
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	97.4
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	97.4
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	97.4
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	97.39
3aln_A	327	Dual specificity mitogen-activated protein kinase;	97.38
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	97.38
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	97.37
3an0_A	340	Dual specificity mitogen-activated protein kinase;	97.37
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	97.37
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	97.36
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	97.35
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	97.35
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	97.34
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	97.34
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	97.34
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.33
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	97.32
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	97.32
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	97.31
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	97.31
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	97.31
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	97.3
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	97.3
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	97.27
3fme_A	290	Dual specificity mitogen-activated protein kinase;	97.26
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	97.2
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	97.19
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	97.18
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	97.16
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	97.15
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	97.13
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	97.1
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	97.09
2dyl_A	318	Dual specificity mitogen-activated protein kinase	97.08
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	97.08
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	97.07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	97.06
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	97.04
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	97.03
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	97.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	96.99
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	96.99
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	96.98
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	96.98
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	96.96
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	96.95
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	96.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	96.82
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	96.79
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	96.76
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	96.74
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	96.72
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	96.71
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	96.7
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	96.68
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	96.58
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	96.46
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	96.38
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.23
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	96.14
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	95.96
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.96
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	95.89
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	95.48
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.91
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.91
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.65
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.22
3qwe_A	279	GMIP, GEM-interacting protein; structural genomics	94.03
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	93.76
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.62
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	93.18
3a2k_A	464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	92.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.43
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.28
1wy5_A	317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	92.26
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	92.23
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	91.62
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.58
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	90.08
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.44
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	89.43
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.0
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.73
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	87.25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.64
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	86.38
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	85.14
1k92_A	455	Argininosuccinate synthase, argininosuccinate SY;	84.93
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.4
1ni5_A	433	Putative cell cycle protein MESJ; structural genom	84.15
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.68
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	83.33
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.32
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	83.11
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	82.6
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.96
3bl5_A	219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	81.84
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.44
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	81.4
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	81.24
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.77
2nz2_A	413	Argininosuccinate synthase; amino-acid biosynthesi	80.74
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.29
1sur_A	215	PAPS reductase; assimilatory sulfate reduction, 3-	80.02

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=99.86  E-value=3.1e-21  Score=176.18  Aligned_cols=138  Identities=12%  Similarity=0.119  Sum_probs=118.4

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      -++||||||+| +.|..||+||+.++  .+++|++|||.++........        . .....+.+..++.+++.|+.+
T Consensus         5 ~~~ILv~~D~s-~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~l~~~   74 (146)
T 3s3t_A            5 YTNILVPVDSS-DAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPAL--------D-PVLSELLDAEAAHAKDAMRQR   74 (146)
T ss_dssp             CCEEEEECCSS-HHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGG--------H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCC-HHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccc--------c-cccHHHHHHHHHHHHHHHHHH
Confidence            37999999999 99999999999988  589999999998764321100        0 123445666778889999999


Q ss_pred             HHHHHHcCC-ceEEEEEecCChHHHHHH-HHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          122 LLICRQMGV-RAEKLDTESESTEKGILE-LISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       122 ~~~c~~~gV-~~e~~vie~~~~~~~Ive-~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      ...+...|+ +++..+..| ++++.|++ +|++.++|+||||++|++++.+.++||   ++.+|+++++  |+||||.
T Consensus        75 ~~~~~~~g~~~~~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs---~~~~vl~~~~--~pVlvV~  146 (146)
T 3s3t_A           75 QQFVATTSAPNLKTEISYG-IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGS---TTSYVVDHAP--CNVIVIR  146 (146)
T ss_dssp             HHHHTTSSCCCCEEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCH---HHHHHHHHCS--SEEEEEC
T ss_pred             HHHHHhcCCcceEEEEecC-ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcc---hHHHHhccCC--CCEEEeC
Confidence            999999999 988887776 78999999 999999999999999999999999998   9999999999  9999983

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=99.86  E-value=3.1e-21  Score=179.69  Aligned_cols=147  Identities=11%  Similarity=0.168  Sum_probs=117.5

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCC-----CcccccCCC--C-CCCcchHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPA-----QMIPVMGTK--F-PASSLEEEKVQAYREIERQD  113 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~-----~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~  113 (591)
                      -++||||||+| +.|.+||+||+.++  .+++|++|||.++.     .........  + +.   .......+.+..++.
T Consensus         5 ~~~ILv~vD~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~   80 (162)
T 1mjh_A            5 YKKILYPTDFS-ETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS---VEEFENELKNKLTEE   80 (162)
T ss_dssp             CCEEEEECCSC-HHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCC-HHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc---hhhhHHHHHHHHHHH
Confidence            36999999999 99999999999998  58899999999764     211110000  1 11   001133455667788


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEE
Q 007740          114 MHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHI  193 (591)
Q Consensus       114 ~~~lL~~~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V  193 (591)
                      +++.|+.+...+...|++++..+..| +|++.|+++|+++++|+||||+||++++.+.++||   |+.+|+++++  |+|
T Consensus        81 ~~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GS---v~~~vl~~~~--~pV  154 (162)
T 1mjh_A           81 AKNKMENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS---VTENVIKKSN--KPV  154 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH---HHHHHHHHCC--SCE
T ss_pred             HHHHHHHHHHHHHHcCCceEEEEcCC-CHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecc---hHHHHHHhCC--CCE
Confidence            89999999999999999998877765 89999999999999999999999999999999998   9999999998  999


Q ss_pred             EEEcCCc
Q 007740          194 WFICNGN  200 (591)
Q Consensus       194 ~vV~kgk  200 (591)
                      +||..++
T Consensus       155 lvv~~~~  161 (162)
T 1mjh_A          155 LVVKRKN  161 (162)
T ss_dssp             EEECCCC
T ss_pred             EEEeCCC
Confidence            9997543

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=99.85  E-value=1.6e-21  Score=178.18  Aligned_cols=140  Identities=14%  Similarity=0.161  Sum_probs=113.6

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||||+| +.|..|++||+.++  .+++|++|||.++...........+..     ....+.+..++.+++.|+.+.
T Consensus         3 ~~ILv~vD~s-~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~   76 (147)
T 3hgm_A            3 NRIMVPVDGS-KGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPE-----QLDIPDDALKDYATEIAVQAK   76 (147)
T ss_dssp             SEEEEECCSB-HHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCG-----GGCCCTTHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCC-HHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChh-----hhhhHHHHHHHHHHHHHHHHH
Confidence            6899999999 99999999999988  689999999998754111111111111     001122345677888999999


Q ss_pred             HHHHHcCCce---EEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          123 LICRQMGVRA---EKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       123 ~~c~~~gV~~---e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      ..+...|+++   +..+..| +|++.|+++|+++++|+||||++|++++.+.++||   ++.+|+++++  |+|+||
T Consensus        77 ~~~~~~g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs---~~~~vl~~~~--~pVlvV  147 (147)
T 3hgm_A           77 TRATELGVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGS---VAQRVAGSAH--CPVLVV  147 (147)
T ss_dssp             HHHHHTTCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCH---HHHHHHHHCS--SCEEEC
T ss_pred             HHHHhcCCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCccccceeecc---HHHHHHhhCC--CCEEEC
Confidence            9999999998   8666665 89999999999999999999999999999999998   9999999999  999986

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=99.84  E-value=4.1e-20  Score=171.14  Aligned_cols=136  Identities=18%  Similarity=0.220  Sum_probs=114.1

Q ss_pred             CCEEEEeec--CChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVA--KQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD  119 (591)
Q Consensus        44 ~~kIlVAVD--~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~  119 (591)
                      -++||||||  +| +.|..|++||+.++  .+++|++|||.++...... ..      +.    ..+.+..++.+++.|+
T Consensus        15 ~~~ILv~vD~~~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~------~~----~~~~~~~~~~~~~~l~   82 (156)
T 3fg9_A           15 YRRILLTVDEDDN-TSSERAFRYATTLAHDYDVPLGICSVLESEDINIF-DS------LT----PSKIQAKRKHVEDVVA   82 (156)
T ss_dssp             CC-EEEECCSCCC-HHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC-CS------SH----HHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCC-HHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc-cc------CC----HHHHHHHHHHHHHHHH
Confidence            479999999  99 99999999999988  6899999999987643211 11      11    1344556778889999


Q ss_pred             HHHHHHHHcCC-ceEEEEEecCChHHHHHHH-HHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          120 MCLLICRQMGV-RAEKLDTESESTEKGILEL-ISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       120 ~~~~~c~~~gV-~~e~~vie~~~~~~~Ive~-a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      .+...+...|+ .++..+..+++|++.|+++ |+++++|+||||++|++++.+ ++||   ++.+|+++++  |+|+||.
T Consensus        83 ~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~-~~Gs---~~~~vl~~a~--~PVlvV~  156 (156)
T 3fg9_A           83 EYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHSK-IAGA---IGPRLARKAP--ISVIVVR  156 (156)
T ss_dssp             HHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSS-SCSC---HHHHHHHHCS--SEEEEEC
T ss_pred             HHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccce-eecc---hHHHHHHhCC--CCEEEeC
Confidence            99999999999 4888887756999999999 999999999999999999975 8888   9999999999  9999983

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=99.84  E-value=2.7e-20  Score=175.83  Aligned_cols=145  Identities=17%  Similarity=0.257  Sum_probs=106.5

Q ss_pred             CCEEEEeecCChH---------HHHHHHHHHHHhc-C----CCeEEEEEEeCCCCc-ccccCCCCCCCcchHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVK---------ESKSVLLWALQNS-G----GKRICIIHVHTPAQM-IPVMGTKFPASSLEEEKVQAYRE  108 (591)
Q Consensus        44 ~~kIlVAVD~S~~---------~S~~Al~wAl~~~-~----g~~I~llHV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  108 (591)
                      -++||||||+| +         .|.+||+||+.++ .    +++|++|||.++... ....+.    ..........+.+
T Consensus         5 ~~~ILv~vD~s-~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~----~~~~~~~~~~~~~   79 (175)
T 2gm3_A            5 PTKVMVAVNAS-TIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDS----IYASPEDFRDMRQ   79 (175)
T ss_dssp             CEEEEEECCBC-SSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------C----CCCSHHHHHHHTT
T ss_pred             ccEEEEEECCC-cccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccccccccc----ccCCHHHHHHHHH
Confidence            36999999999 8         9999999999976 2    679999999865421 100000    0111233344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCC
Q 007740          109 IERQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAP  188 (591)
Q Consensus       109 ~~~~~~~~lL~~~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap  188 (591)
                      ...+.+++.|+.+...+...|++++..+..| ++++.|+++|+++++|+||||++|++++.+.++||   |+.+|+++++
T Consensus        80 ~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gs---va~~vl~~a~  155 (175)
T 2gm3_A           80 SNKAKGLHLLEFFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGT---VSAFCVKHAE  155 (175)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECCCC--------C---HHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCc---hHHHHHhCCC
Confidence            4566778899999999988999998877765 78999999999999999999999999999999999   9999999998


Q ss_pred             CccEEEEEcCC
Q 007740          189 ASCHIWFICNG  199 (591)
Q Consensus       189 ~~C~V~vV~kg  199 (591)
                        |+||||..+
T Consensus       156 --~pVlvv~~~  164 (175)
T 2gm3_A          156 --CPVMTIKRN  164 (175)
T ss_dssp             --SCEEEEECC
T ss_pred             --CCEEEEcCC
Confidence              999999753

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=99.83  E-value=3.6e-20  Score=167.62  Aligned_cols=132  Identities=13%  Similarity=0.139  Sum_probs=112.5

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc---CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHH-HHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS---GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIER-QDMHNHLDM  120 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~---~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lL~~  120 (591)
                      ++||||+|+| +.|..|++||+.++   .+++|++|||.++.......+          .....+.+..+ +.+++.|+.
T Consensus         2 ~~ILv~~D~s-~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~   70 (138)
T 3idf_A            2 KKLLFAIDDT-EACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAV----------LAAYDEIEMKEEEKAKLLTQK   70 (138)
T ss_dssp             EEEEEECCSS-HHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCC-HHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccc----------cCcHHHHHHHHHHHHHHHHHH
Confidence            5899999999 99999999999988   588999999998764321100          11123445556 788899999


Q ss_pred             HHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      +...+...|++++..+..| ++++.|+++|+  ++|+||||++|++++.+.+ ||   ++.+|+++++  |+||||
T Consensus        71 ~~~~~~~~g~~~~~~v~~g-~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs---~~~~vl~~~~--~pVlvv  137 (138)
T 3idf_A           71 FSTFFTEKGINPFVVIKEG-EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-AS---HQDDFIQKAP--IPVLIV  137 (138)
T ss_dssp             HHHHHHTTTCCCEEEEEES-CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CC---TTCHHHHHCS--SCEEEE
T ss_pred             HHHHHHHCCCCeEEEEecC-ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-Cc---HHHHHHhcCC--CCEEEe
Confidence            9999999999999877776 79999999999  9999999999999999999 99   9999999999  999998

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=99.82  E-value=1.1e-19  Score=170.52  Aligned_cols=146  Identities=5%  Similarity=0.029  Sum_probs=111.4

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchH-HHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEE-EKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      ++||||||+| +.|..||+||+.++  .+++|++|||.++..... ....++.....+ .....+.+..++.+++.|+.+
T Consensus         6 ~~ILv~vD~s-~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (170)
T 2dum_A            6 RKVLFPTDFS-EGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEE-LMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK   83 (170)
T ss_dssp             SEEEEECCSS-HHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGC-CC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCC-HHHHHHHHHHHHHHHhcCCEEEEEEEecCccccc-cccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            6999999999 99999999999999  689999999997653211 010111000000 000122344566778899999


Q ss_pred             HHHHHHcCCceEE--EEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          122 LLICRQMGVRAEK--LDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       122 ~~~c~~~gV~~e~--~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      ...+...|++++.  .+..| ++++.|+++|+++++|+||||++|++++.+.++||   |+.+|+++++  |+||||..
T Consensus        84 ~~~~~~~g~~~~~~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gs---v~~~vl~~~~--~PVlvv~~  156 (170)
T 2dum_A           84 AEEVKRAFRAKNVRTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGS---TVMRVLRKTK--KPVLIIKE  156 (170)
T ss_dssp             HHHHHHHTTCSEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCH---HHHHHHHHCS--SCEEEECC
T ss_pred             HHHHHHcCCceeeeeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCCccccceech---HHHHHHHhCC--CCEEEEcc
Confidence            9988888999886  66655 89999999999999999999999999999999998   9999999998  99999964

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=99.82  E-value=6.9e-20  Score=171.85  Aligned_cols=138  Identities=11%  Similarity=0.116  Sum_probs=108.1

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc-CCCeEEEE--EEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS-GGKRICII--HVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~-~g~~I~ll--HV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      -++||||||+| +.|..||+||++++ .+++|++|  ||.++..+..  +...+        ...+.+..++.+++.|+.
T Consensus        17 ~~~ILv~vD~s-~~s~~al~~A~~lA~~~a~l~ll~a~v~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~l~~   85 (163)
T 1tq8_A           17 YKTVVVGTDGS-DSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARA--ADILK--------DESYKVTGTAPIYEILHD   85 (163)
T ss_dssp             CCEEEEECCSS-HHHHHHHHHHHHHHTTTSEEEEEEECCC------------------------------CCTHHHHHHH
T ss_pred             CCEEEEEcCCC-HHHHHHHHHHHHHhCCCCEEEEEEeeeccCccccc--ccccc--------cHHHHHHHHHHHHHHHHH
Confidence            47999999999 99999999999988 68899999  8776543200  10000        012233345667889999


Q ss_pred             HHHHHHHcCCc-eEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          121 CLLICRQMGVR-AEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       121 ~~~~c~~~gV~-~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      +...+...|++ ++..+..| +|++.|+++|++.++|+||||++|++++.++++||   |+.+|+++++  |+|+||..
T Consensus        86 ~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGS---va~~vl~~a~--~PVlvV~~  158 (163)
T 1tq8_A           86 AKERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIAGRLLGS---VPANVSRRAK--VDVLIVHT  158 (163)
T ss_dssp             HHHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBB---HHHHHHHHTT--CEEEEECC
T ss_pred             HHHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCcccceeecc---HHHHHHHhCC--CCEEEEeC
Confidence            99999888998 88877765 88999999999999999999999999999999999   9999999998  99999964

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=99.81  E-value=1e-19  Score=164.79  Aligned_cols=131  Identities=18%  Similarity=0.259  Sum_probs=103.2

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||+|+| +.|..||+||+.++  .+++|++|||.++... . .....+      +   .+.+..++.+++.|+.+.
T Consensus         3 ~~ILv~~D~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~-~~~~~~------~---~~~~~~~~~~~~~l~~~~   70 (137)
T 2z08_A            3 KTILLAYDGS-EHARRAAEVAKAEAEAHGARLIVVHAYEPVPD-Y-LGEPFF------E---EALRRRLERAEGVLEEAR   70 (137)
T ss_dssp             SEEEEECCSS-HHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------CHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCC-HHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc-c-ccccch------H---HHHHHHHHHHHHHHHHHH
Confidence            6899999999 99999999999988  6899999999975421 1 111001      1   223334556677777765


Q ss_pred             HHHHHcCC-ceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          123 LICRQMGV-RAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       123 ~~c~~~gV-~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      ..   .|+ +++..+..| ++++.|+++|+++++|+||||++|++++.+.++||   ++.+|+++++  |+|+||
T Consensus        71 ~~---~g~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs---~~~~vl~~~~--~pVlvv  136 (137)
T 2z08_A           71 AL---TGVPKEDALLLEG-VPAEAILQAARAEKADLIVMGTRGLGALGSLFLGS---QSQRVVAEAP--CPVLLV  136 (137)
T ss_dssp             HH---HCCCGGGEEEEES-SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCH---HHHHHHHHCS--SCEEEE
T ss_pred             HH---cCCCccEEEEEec-CHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhcc---HHHHHHhcCC--CCEEEe
Confidence            44   688 888776665 89999999999999999999999999999999998   9999999998  999998

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=99.81  E-value=1.9e-19  Score=167.42  Aligned_cols=128  Identities=18%  Similarity=0.200  Sum_probs=110.5

Q ss_pred             CCEEEEeecC-ChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAK-QVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD~-S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      -++||||||+ | +.|..||+||+.++  .+++|++|||.++....            .        +...+.+++.|+.
T Consensus        24 ~~~ILv~vD~~s-~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~------------~--------~~~~~~~~~~l~~   82 (155)
T 3dlo_A           24 YMPIVVAVDKKS-DRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT------------K--------DEDIIEAKETLSW   82 (155)
T ss_dssp             CCCEEEECCSSS-HHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS------------C--------HHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCC-HHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc------------c--------HHHHHHHHHHHHH
Confidence            4799999999 9 99999999999988  58999999999764210            0        1234567788999


Q ss_pred             HHHHHHHcCCceEEEE-EecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          121 CLLICRQMGVRAEKLD-TESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~v-ie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      +.+.+...|+.++..+ +..++|++.|+++|+++++|+||||++|++++.+.++||   |+.+|+++++  |+|+||.
T Consensus        83 ~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGS---v~~~vl~~a~--~PVLvVr  155 (155)
T 3dlo_A           83 AVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGS---VARDVILKAN--KPVICIK  155 (155)
T ss_dssp             HHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCH---HHHHHHHHCS--SCEEEEC
T ss_pred             HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEecc---HHHHHHHhCC--CCEEEeC
Confidence            9999999999887643 556799999999999999999999999999999999998   9999999999  9999984

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=99.80  E-value=1.6e-19  Score=165.63  Aligned_cols=138  Identities=17%  Similarity=0.212  Sum_probs=95.3

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCccc-ccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIP-VMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      -++||||||+| +.|..||+||+.++  .+++|++|||.++..... ..++..+...      ..+.+...+.+++.|..
T Consensus         6 ~~~ILv~vD~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~   78 (150)
T 3tnj_A            6 YHHILLAVDFS-SEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDT------ETTYDAMLDVEKQKLSQ   78 (150)
T ss_dssp             CSEEEEECCCS-TTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSS------CCCHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCC-HHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCH------HHHHHHHHHHHHHHHHH
Confidence            47999999999 99999999999988  589999999998754310 1122222110      11223344556666666


Q ss_pred             HHHHHHHcCCce-EEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          121 CLLICRQMGVRA-EKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       121 ~~~~c~~~gV~~-e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      +   +.+.|+.+ +..+.. +++++.|+++|+++++|+||||++|++++. .++||   ++.+|+++++  |+|+||..
T Consensus        79 ~---~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs---~~~~vl~~~~--~pVlvv~~  147 (150)
T 3tnj_A           79 I---GNTLGIDPAHRWLVW-GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGS---TANSVLHYAK--CDVLAVRL  147 (150)
T ss_dssp             H---HHHHTCCGGGEEEEE-SCHHHHHHHHHHHTTCSEEEEEEC---------CCC---HHHHHHHHCS--SEEEEEEC
T ss_pred             H---HHHcCCCcceEEEec-CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecc---hHHHHHHhCC--CCEEEEeC
Confidence            5   34447774 555554 589999999999999999999999999999 99998   9999999999  99999964

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=99.79  E-value=1.8e-19  Score=163.82  Aligned_cols=135  Identities=12%  Similarity=0.179  Sum_probs=102.0

Q ss_pred             CEEEEeecCChHH--HHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKE--SKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        45 ~kIlVAVD~S~~~--S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      ++||||||+| +.  |..|++||+.++  .+++|++|||.++.......+...+.      .    .+..++..++.+..
T Consensus         2 k~ILv~vD~s-~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~   70 (143)
T 3fdx_A            2 NAILVPIDIS-DKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTA------E----LPGMDELREGSETQ   70 (143)
T ss_dssp             CEEEEECCTT-CSSCCTTHHHHHHHHHHHHTCEEEEEEEECC--------------------------CHHHHHHHHHHH
T ss_pred             CEEEEEecCC-hHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccc------h----hhhHHHHHHHHHHH
Confidence            6999999999 99  999999999988  68999999999875432211111110      0    11123444556667


Q ss_pred             HHHHHHHcCC---ceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          121 CLLICRQMGV---RAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       121 ~~~~c~~~gV---~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      +..++.+.|+   .++..+..| ++++.|+++|+++++|+||||++| +++.+.++||   ++.+|+++++  |+|+||.
T Consensus        71 l~~~~~~~~~~~~~v~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs---~~~~v~~~~~--~pVlvv~  143 (143)
T 3fdx_A           71 LKEIAKKFSIPEDRMHFHVAEG-SPKDKILALAKSLPADLVIIASHR-PDITTYLLGS---NAAAVVRHAE--CSVLVVR  143 (143)
T ss_dssp             HHHHHTTSCCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCH---HHHHHHHHCS--SEEEEEC
T ss_pred             HHHHHHHcCCCCCceEEEEEec-ChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeecc---HHHHHHHhCC--CCEEEeC
Confidence            7777777765   456666666 899999999999999999999996 8899999998   9999999999  9999983

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=99.75  E-value=3.4e-18  Score=155.06  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=98.7

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||+|+| +.|..||+||+.++  .+++|++|||.++.+..  ..+ ...     .....+.+...+.+++.|..+ 
T Consensus         3 ~~ILv~~D~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~-~~~-----~~~~~~~~~~~~~~~~~l~~~-   72 (141)
T 1jmv_A            3 KHILVAVDLS-EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDL--YTG-LID-----VNMSSMQDRISTETQKALLDL-   72 (141)
T ss_dssp             SEEEEEECCS-TTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGG--CCC-CEE-----HHHHHHTTCCCCHHHHHHHHH-
T ss_pred             ceEEEEecCc-hhhHHHHHHHHHHHHhcCCEEEEEEEecCchhh--hcc-ccc-----cchHHHHHHHHHHHHHHHHHH-
Confidence            6899999999 99999999999988  68999999998542111  011 000     111122222234455555554 


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcCC
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNG  199 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~kg  199 (591)
                        +...|+++...++..++|++.|+++|+++++|+||||++ ++++.+ + ||   ++.+|+++++  |+|+||..+
T Consensus        73 --~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~-l-gs---~~~~vl~~~~--~pVlvv~~~  139 (141)
T 1jmv_A           73 --AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK-L-MS---STRQVMNTIK--IDMLVVPLR  139 (141)
T ss_dssp             --HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH-H-HH---HHHHHHTTCC--SEEEEEECC
T ss_pred             --HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh-h-cc---hHHHHHhcCC--CCEEEeeCC
Confidence              445688763334444589999999999999999999999 999988 3 77   9999999998  999999643

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=99.70  E-value=6.5e-17  Score=166.79  Aligned_cols=143  Identities=13%  Similarity=0.109  Sum_probs=117.6

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      -++||||+|+| +.|..||+||+.++  .+++|++|||.++.+..  ....     +.......+.+...+.+++.|..+
T Consensus         7 ~k~ILv~~D~s-~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~   78 (319)
T 3olq_A            7 YQNLLVVIDPN-QDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYD--MTTL-----LSPDERNAMRKGVINQKTAWIKQQ   78 (319)
T ss_dssp             SCEEEEECCTT-CSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGG--CTTT-----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCC-cccHHHHHHHHHHHHHcCCeEEEEEEecccchh--hccc-----cChhhHHHHHHHHHHHHHHHHHHH
Confidence            47999999999 99999999999988  68999999998754321  1111     112344455566667788899999


Q ss_pred             HHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcCC
Q 007740          122 LLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNG  199 (591)
Q Consensus       122 ~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~kg  199 (591)
                      ...+...|++++..+...+++...|++++.++++|+||||++|++++.+.++||   ++..|+++++  |+||||..+
T Consensus        79 ~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs---~~~~vl~~~~--~PVlvv~~~  151 (319)
T 3olq_A           79 ARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTP---LDWQLLRKCP--APVWMVKDK  151 (319)
T ss_dssp             HHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCH---HHHHHHHHCS--SCEEEEESS
T ss_pred             HHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccc---cHHHHHhcCC--CCEEEecCc
Confidence            998888999999888746689999999999999999999999999999999998   9999999999  999999754

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=99.70  E-value=2.4e-17  Score=165.97  Aligned_cols=144  Identities=13%  Similarity=0.030  Sum_probs=111.8

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPA--SSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      ++||||+|+| +.|..|++||+.++  .+++|+++||.++...........+.  ..+ .+.-+.+.+...+.+++.|+.
T Consensus         1 k~ILv~vD~s-~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~   78 (268)
T 3ab8_A            1 MRILLATDGS-PQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPV-PVLRTELERALALRGEAVLER   78 (268)
T ss_dssp             CCEEEECCSC-GGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCC-HHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999 99999999999988  68899999998754211000000010  000 000111244456778899999


Q ss_pred             HHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCc-hhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADK-HYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~-~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      +...+...|++++..+..| ++.+.|+++  +.++|+||||++|++ ++.+.++||   ++.+|+++++  |+|++|..
T Consensus        79 ~~~~~~~~g~~~~~~~~~g-~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs---~~~~v~~~a~--~PVlvv~~  149 (268)
T 3ab8_A           79 VRQSALAAGVAVEAVLEEG-VPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGS---TADRVLRASP--VPVLLAPG  149 (268)
T ss_dssp             HHHHHHHTTCCEEEEEEEE-CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCH---HHHHHHHHCS--SCEEEECS
T ss_pred             HHHHHHhCCCCeEEEEecC-CHHHHHHhh--ccCCCEEEEeccCCCccccccccch---hHHHHHHhCC--CCEEEECC
Confidence            9999999999998877765 789999999  999999999999999 999999998   9999999999  99999964

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=99.69  E-value=5.8e-17  Score=165.62  Aligned_cols=139  Identities=14%  Similarity=0.163  Sum_probs=114.0

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      -++||||||+| +.|..|++||+.++  .+++|++|||.++........+..         ...+.+..++.+++.|+.+
T Consensus        22 ~~~ILv~vD~s-~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~   91 (294)
T 3loq_A           22 SNAMLLPTDLS-ENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGID---------IDHYIDEMSEKAEEVLPEV   91 (294)
T ss_dssp             TCEEEEECCSC-TGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCC---------TTHHHHHHHHHHHHHHHHH
T ss_pred             hccEEEecCCC-HHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccccccc---------HHHHHHHHHHHHHHHHHHH
Confidence            46999999999 99999999999988  689999999998754321111111         1124455667888999999


Q ss_pred             HHHHHHcCCceEE-EEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcCC
Q 007740          122 LLICRQMGVRAEK-LDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNG  199 (591)
Q Consensus       122 ~~~c~~~gV~~e~-~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~kg  199 (591)
                      .+.+...|++++. .+...+++...|  ++.+.++|+||||++|++++.+.++||   ++.+|+++++  |+||||..+
T Consensus        92 ~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs---~~~~vl~~~~--~PVlvv~~~  163 (294)
T 3loq_A           92 AQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGS---VSEGVLHDSK--VPVYIFKHD  163 (294)
T ss_dssp             HHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCC---HHHHHHHHCS--SCEEEECCC
T ss_pred             HHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeecc---HHHHHHhcCC--CCEEEecCc
Confidence            9999999999987 555245889999  999999999999999999999999999   9999999999  999999643

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=99.69  E-value=1.6e-16  Score=162.18  Aligned_cols=134  Identities=13%  Similarity=0.106  Sum_probs=102.1

Q ss_pred             CCCEEEEeecCChHH-------HHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHH
Q 007740           43 IEDKIYVAVAKQVKE-------SKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQD  113 (591)
Q Consensus        43 ~~~kIlVAVD~S~~~-------S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (591)
                      .-++||||+|+| +.       |.+|++||+.++  .+++|++|||.++.....    ..+.       . .+.+..++.
T Consensus       133 ~~~~Ilva~D~s-~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~-------~-~~~~~~~~~  199 (290)
T 3mt0_A          133 TGGKILAAVDVG-NNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS----ADPT-------F-QLSETIEAR  199 (290)
T ss_dssp             TTCEEEEEECTT-CCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-------------C-------H-HHHHHHHHH
T ss_pred             CCCeEEEEECCC-CcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc----cCch-------h-HHHHHHHHH
Confidence            358999999999 77       999999999988  689999999998753211    0111       0 233344455


Q ss_pred             HHHHHHHHHHHHHHcCCc-eEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccE
Q 007740          114 MHNHLDMCLLICRQMGVR-AEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCH  192 (591)
Q Consensus       114 ~~~lL~~~~~~c~~~gV~-~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~  192 (591)
                      +++.|..+   +.+.|++ +...+..| +|+++|+++|+++++|+||||++|++++.++|+||   |+.+|+++++  |+
T Consensus       200 ~~~~l~~~---~~~~g~~~~~~~v~~g-~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gs---v~~~vl~~~~--~p  270 (290)
T 3mt0_A          200 YREACRTF---QAEYGFSDEQLHIEEG-PADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGN---TAEVVLDTLE--SD  270 (290)
T ss_dssp             HHHHHHHH---HHHHTCCTTTEEEEES-CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCH---HHHHHHTTCS--SE
T ss_pred             HHHHHHHH---HHHcCCCcceEEEecc-CHHHHHHHHHHhcCCCEEEECCCCCcCCcceecch---HHHHHHhcCC--CC
Confidence            55566554   3444774 44455555 89999999999999999999999999999999998   9999999999  99


Q ss_pred             EEEEcC
Q 007740          193 IWFICN  198 (591)
Q Consensus       193 V~vV~k  198 (591)
                      |+||..
T Consensus       271 VLvv~~  276 (290)
T 3mt0_A          271 VLVLKP  276 (290)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999953

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=99.68  E-value=2.2e-16  Score=162.57  Aligned_cols=137  Identities=11%  Similarity=0.223  Sum_probs=111.4

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      -++||||+|+| +.|..||+||+.++  .+++|++|||.++... +.....++     .    .+.+...+.+++.|+.+
T Consensus        19 ~~~ILv~~D~s-~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-~~~~~~~~-----~----~~~~~~~~~~~~~l~~~   87 (309)
T 3cis_A           19 SLGIIVGIDDS-PAAQVAVRWAARDAELRKIPLTLVHAVSPEVA-TWLEVPLP-----P----GVLRWQQDHGRHLIDDA   87 (309)
T ss_dssp             TTEEEEECCSS-HHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC-CTTCCCCC-----H----HHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCC-HHHHHHHHHHHHHHHhcCCcEEEEEEecCccc-ccccCCCC-----c----hhhHHHHHHHHHHHHHH
Confidence            47999999999 99999999999988  6889999999975321 11111111     1    23344556778889999


Q ss_pred             HHHHHHc-----CCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          122 LLICRQM-----GVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       122 ~~~c~~~-----gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      ...+...     |++++..+..| ++...|+++++  ++|+||||++|++++.+.++||   ++.+|+++++  |+||||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs---~~~~vl~~~~--~PVlvv  159 (309)
T 3cis_A           88 LKVVEQASLRAGPPTVHSEIVPA-AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGS---VSSGLLRHAH--CPVVII  159 (309)
T ss_dssp             HHHHHHHCSSSCCSCEEEEEESS-CHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCH---HHHHHHHHCS--SCEEEE
T ss_pred             HHHHHHhcccCCCceEEEEEecC-CHHHHHHHHhc--CCCEEEECCCCCccccccccCc---HHHHHHHhCC--CCEEEE
Confidence            8888876     89998877665 89999999986  8999999999999999999998   9999999998  999999


Q ss_pred             cCC
Q 007740          197 CNG  199 (591)
Q Consensus       197 ~kg  199 (591)
                      ..+
T Consensus       160 ~~~  162 (309)
T 3cis_A          160 HDE  162 (309)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            643

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=99.67  E-value=5.2e-17  Score=146.83  Aligned_cols=127  Identities=9%  Similarity=0.039  Sum_probs=96.1

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEe-CC-CCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVH-TP-AQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      ++||||+|+| +.|..||+||+.++  .+++|++|||. ++ +..........+..       ..+.+...+.+++.|+.
T Consensus         5 ~~ILv~~D~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~   76 (138)
T 1q77_A            5 KVLLVLTDAY-SDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFP-------PEIKEESKKRIERRLRE   76 (138)
T ss_dssp             EEEEEEESTT-CCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCC-------THHHHHHHHHHHHHHHH
T ss_pred             cEEEEEccCC-HhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCC-------hHHHHHHHHHHHHHHHH
Confidence            6999999999 99999999999988  58899999998 63 11100000011111       02334455667778888


Q ss_pred             HHHHH--HHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          121 CLLIC--RQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       121 ~~~~c--~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      + ..|  ...| +++..+.. +++++.|+++|+++++|+||||++|+         |   |+.+|+++++  |+|+||
T Consensus        77 ~-~~~~~~~~~-~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~g~---------s---v~~~vl~~a~--~PVlvv  137 (138)
T 1q77_A           77 V-WEKLTGSTE-IPGVEYRI-GPLSEEVKKFVEGKGYELVVWACYPS---------A---YLCKVIDGLN--LASLIV  137 (138)
T ss_dssp             H-HHHHHSCCC-CCCEEEEC-SCHHHHHHHHHTTSCCSEEEECSCCG---------G---GTHHHHHHSS--SEEEEC
T ss_pred             H-HHHhhccCC-cceEEEEc-CCHHHHHHHHHHhcCCCEEEEeCCCC---------c---hHHHHHHhCC--CceEee
Confidence            8 764  4556 77766555 58999999999999999999999986         5   9999999999  999997

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=99.65  E-value=7.7e-16  Score=158.72  Aligned_cols=139  Identities=12%  Similarity=0.079  Sum_probs=106.4

Q ss_pred             CCCEEEEeecCChH-------HHHHHHHHHHHhc--C--CCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHH
Q 007740           43 IEDKIYVAVAKQVK-------ESKSVLLWALQNS--G--GKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIER  111 (591)
Q Consensus        43 ~~~kIlVAVD~S~~-------~S~~Al~wAl~~~--~--g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (591)
                      ..++||||+|+| .       .|.+||+||+.++  .  +++|+||||.++.....  ....+.     .....+.+..+
T Consensus       155 ~~~~Ilva~D~s-~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~--~~~~~~-----~~~~~~~~~~~  226 (319)
T 3olq_A          155 EYGTIVVAANLS-NEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI--AIELPD-----FDPNLYNNALR  226 (319)
T ss_dssp             TTCEEEEECCCS-CCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC--CTTCTT-----CCHHHHHHHHH
T ss_pred             cCCeEEEEECCC-CcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh--hccCCc-----ccHHHHHHHHH
Confidence            357999999999 6       6899999999887  4  89999999998764221  111111     11233445555


Q ss_pred             HHHHHHHHHHHHHHHHcCCc-eEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCc
Q 007740          112 QDMHNHLDMCLLICRQMGVR-AEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPAS  190 (591)
Q Consensus       112 ~~~~~lL~~~~~~c~~~gV~-~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~  190 (591)
                      +.+++.|..+   +.+.|+. +...+.. ++++++|+++++++++|+||||++|++++.++|+||   |+.+|+++++  
T Consensus       227 ~~~~~~l~~~---~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gs---v~~~vl~~~~--  297 (319)
T 3olq_A          227 GQHLIAMKEL---RQKFSIPEEKTHVKE-GLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGN---TAEQLIDHIK--  297 (319)
T ss_dssp             HHHHHHHHHH---HHHTTCCGGGEEEEE-SCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHH---HHHHHHTTCC--
T ss_pred             HHHHHHHHHH---HHHhCCCcccEEEec-CCcHHHHHHHHHHhCCCEEEEeccCccCCccccccH---HHHHHHhhCC--
Confidence            6666666655   4455664 3444444 588999999999999999999999999999999999   9999999999  


Q ss_pred             cEEEEEcC
Q 007740          191 CHIWFICN  198 (591)
Q Consensus       191 C~V~vV~k  198 (591)
                      |+|+||..
T Consensus       298 ~pVLvv~~  305 (319)
T 3olq_A          298 CDLLAIKP  305 (319)
T ss_dssp             SEEEEECC
T ss_pred             CCEEEECC
Confidence            99999954

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=99.64  E-value=1.5e-15  Score=155.19  Aligned_cols=121  Identities=18%  Similarity=0.217  Sum_probs=105.2

Q ss_pred             CCCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           43 IEDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        43 ~~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      ..++|+||+|+| +.+.+||+||+.++  .+++|++|||.++..                             .++.++.
T Consensus       169 ~~~~Ilv~~d~s-~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------------------------~~~~l~~  218 (294)
T 3loq_A          169 LFDRVLVAYDFS-KWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------------------------KTADLRV  218 (294)
T ss_dssp             TTSEEEEECCSS-HHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------------------------CHHHHHH
T ss_pred             cCCEEEEEECCC-HHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------------------------HHHHHHH
Confidence            457999999999 99999999999988  688999999987641                             1234556


Q ss_pred             HHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcCC
Q 007740          121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICNG  199 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~kg  199 (591)
                      +...+...|++++..+..| +++++|+++++++++|+||||++|++++.++|+||   ++.+|+++++  |+|+||..+
T Consensus       219 ~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs---~~~~vl~~~~--~pvLvv~~~  291 (294)
T 3loq_A          219 MEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMTMILGS---TSESVIRRSP--VPVFVCKRG  291 (294)
T ss_dssp             HHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHC---HHHHHHHHCS--SCEEEECSC
T ss_pred             HHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCc---HHHHHHhcCC--CCEEEECCC
Confidence            6666777899988766655 89999999999999999999999999999999999   9999999999  999999754

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=99.63  E-value=4.1e-16  Score=159.08  Aligned_cols=120  Identities=14%  Similarity=0.124  Sum_probs=104.4

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      -++||||+|+| +.+..||+||+.++  .+++|+++||.+|.                             .+++.|+.+
T Consensus         7 ~~~ILv~~D~s-~~s~~al~~A~~la~~~~a~l~ll~v~~~~-----------------------------~~~~~l~~~   56 (290)
T 3mt0_A            7 IRSILVVIEPD-QLEGLALKRAQLIAGVTQSHLHLLVCEKRR-----------------------------DHSAALNDL   56 (290)
T ss_dssp             CCEEEEECCSS-CSCCHHHHHHHHHHHHHCCEEEEEEECSSS-----------------------------CCHHHHHHH
T ss_pred             hceEEEEeCCC-ccchHHHHHHHHHHHhcCCeEEEEEeeCcH-----------------------------HHHHHHHHH
Confidence            47999999999 99999999999988  68899999998630                             112345555


Q ss_pred             HHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          122 LLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       122 ~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      ...+...|++++..+..++++...|+++|++.++|+||||++|++++.+.++||   ++..|+++++  |+||+|..
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs---~~~~vl~~~~--~PVlvv~~  128 (290)
T 3mt0_A           57 AQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTP---DDWKLLRFAP--CPVLMTKT  128 (290)
T ss_dssp             HHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCH---HHHHHHHHCS--SCEEEECC
T ss_pred             HHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCH---HHHHHHhcCC--CCEEEecC
Confidence            556667899999888877799999999999999999999999999999999998   9999999999  99999963

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=99.63  E-value=1.8e-15  Score=155.80  Aligned_cols=132  Identities=12%  Similarity=0.157  Sum_probs=102.7

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      .++|+||+|+| +.|..||+||+.++  .+++|++|||.++.....     .+.  ..   ...    ..+.+++.|..+
T Consensus       171 ~~~Ilv~~D~s-~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-----~~~--~~---~~~----~~~~~~~~l~~~  235 (309)
T 3cis_A          171 QAPVLVGVDGS-SASELATAIAFDEASRRNVDLVALHAWSDVDVSE-----WPG--ID---WPA----TQSMAEQVLAER  235 (309)
T ss_dssp             CCCEEEECCSS-HHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT-----CSS--CC---HHH----HHHHHHHHHHHH
T ss_pred             CCeEEEEeCCC-hHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC-----CCc--cc---HHH----HHHHHHHHHHHH
Confidence            47999999999 99999999999988  689999999987653211     111  01   111    223444555555


Q ss_pred             HHHHHH--cCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEcC
Q 007740          122 LLICRQ--MGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFICN  198 (591)
Q Consensus       122 ~~~c~~--~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~k  198 (591)
                      ...+..  .|+.++..+..| +|+++|+++++  ++|+||||++|++++.++|+||   |+.+|+++++  |+|+||..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gs---v~~~vl~~~~--~pVlvv~~  306 (309)
T 3cis_A          236 LAGWQERYPNVAITRVVVRD-QPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGS---VGETVAQLAR--TPVIVARE  306 (309)
T ss_dssp             HTTHHHHCTTSCEEEEEESS-CHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCH---HHHHHHHHCS--SCEEEECC
T ss_pred             HHHHHhhCCCCcEEEEEEcC-CHHHHHHHhhC--CCCEEEECCCCCCCccccccCc---HHHHHHhcCC--CCEEEeCC
Confidence            444433  488888776655 89999999998  9999999999999999999998   9999999998  99999963

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=99.46  E-value=1.4e-13  Score=138.20  Aligned_cols=112  Identities=15%  Similarity=0.093  Sum_probs=94.6

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      .++|+||+|+| +.+.+||+||..++  .++.|+++||.++.                            +..++.++.+
T Consensus       154 ~~~ilv~~d~s-~~~~~al~~a~~la~~~~a~l~ll~v~~~~----------------------------~~~~~~l~~~  204 (268)
T 3ab8_A          154 LEGALLGYDAS-ESAVRALHALAPLARALGLGVRVVSVHEDP----------------------------ARAEAWALEA  204 (268)
T ss_dssp             CCEEEEECCSC-HHHHHHHHHHHHHHHHHTCCEEEEEECSSH----------------------------HHHHHHHHHH
T ss_pred             CCEEEEEECCC-HHHHHHHHHHHHhhhcCCCEEEEEEEcCcH----------------------------HHHHHHHHHH
Confidence            47999999999 99999999998877  68899999998642                            1223455666


Q ss_pred             HHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          122 LLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       122 ~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      ...+...|++++..+.. ++++++|+++++++  |+||||+    ++.++++||   ++.+|+++++  |+|++|
T Consensus       205 ~~~l~~~~~~~~~~~~~-g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs---~~~~vl~~~~--~pvlvv  267 (268)
T 3ab8_A          205 EAYLRDHGVEASALVLG-GDAADHLLRLQGPG--DLLALGA----PVRRLVFGS---TAERVIRNAQ--GPVLTA  267 (268)
T ss_dssp             HHHHHHTTCCEEEEEEC-SCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCC---HHHHHHHHCS--SCEEEE
T ss_pred             HHHHHHcCCceEEEEeC-CChHHHHHHHHHhC--CEEEECC----cccccEecc---HHHHHHhcCC--CCEEEe
Confidence            66777789998876665 58999999999999  9999999    678889998   9999999999  999998

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.78  E-value=2.1e-09  Score=111.99  Aligned_cols=61  Identities=26%  Similarity=0.462  Sum_probs=51.8

Q ss_pred             CCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||+|+||.||+|.+.       |+.||||++........+.|.+|+.+| ++++|||||+|+
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il-~~l~HpnIV~l~  109 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL-TMLQHQHIVRFF  109 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            4455678999999999999874       578999999765555567899999999 999999999985

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.76  E-value=2.4e-09  Score=110.08  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.+.       |..||||+++.......+.|.+|+.+| ++++|||||+|+
T Consensus        14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il-~~l~HpnIV~l~   81 (299)
T 4asz_A           14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELL-TNLQHEHIVKFY   81 (299)
T ss_dssp             GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             HeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHH-HhCCCCCCccEE
Confidence            3445568999999999999874       578999999765555567899999999 999999999985

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=98.69  E-value=8.3e-09  Score=106.47  Aligned_cols=57  Identities=32%  Similarity=0.384  Sum_probs=47.3

Q ss_pred             CCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||+|+||.||+|.+.       ++.||||++..... ...+.|.+|+.++ ++++|||||+|+
T Consensus        31 ~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il-~~l~HpNIV~l~   95 (308)
T 4gt4_A           31 MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLR-ARLQHPNVVCLL   95 (308)
T ss_dssp             EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             eeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHH-HhCCCCCCCCcc
Confidence            357999999999999984       47899999965433 3457899999999 999999999985

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=98.60  E-value=2.9e-08  Score=102.35  Aligned_cols=59  Identities=29%  Similarity=0.435  Sum_probs=48.5

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|.+.+ .||||+++....  .....|.+|+.+| ++++|||||+|+
T Consensus        38 l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il-~~l~HpNIV~l~   98 (307)
T 3omv_A           38 VMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVL-RKTRHVNILLFM   98 (307)
T ss_dssp             CCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             eEEeeEEeeCCCcEEEEEEECC-cEEEEEEEecCCCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            4455689999999999999876 599999964322  2356799999999 999999999875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.56  E-value=6.8e-08  Score=97.97  Aligned_cols=76  Identities=38%  Similarity=0.610  Sum_probs=66.1

Q ss_pred             cccccCHHHHHHhhcCCCcC------CccccccceeEEEEEEcCeEEEEEEccCCC----CCChhHHHHHHHHHHcCCCC
Q 007740          514 FFSDFSFSEIEGATHNFDPS------LKIGEGGYGSIYKGLLRHMQVAIKMLHPHS----LQGPSEFQQEVGAYESFIFH  583 (591)
Q Consensus       514 ~~~~~s~~el~~aT~~F~~~------~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~----~~~~~~F~~Ev~il~s~lrH  583 (591)
                      .+..|++.++..+|++|+..      ..||+|+||.||+|...+..||||++....    ......|.+|+.++ .+++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVM-AKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHH-HHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHH-HhcCC
Confidence            36789999999999999988      889999999999999989999999996532    12246799999999 99999


Q ss_pred             CCccccc
Q 007740          584 FNLVDSF  590 (591)
Q Consensus       584 pNLV~li  590 (591)
                      |||++++
T Consensus        90 ~~i~~~~   96 (307)
T 2nru_A           90 ENLVELL   96 (307)
T ss_dssp             TTBCCEE
T ss_pred             CCeEEEE
Confidence            9999874

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=98.49  E-value=2.5e-08  Score=102.50  Aligned_cols=55  Identities=22%  Similarity=0.443  Sum_probs=44.2

Q ss_pred             cCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHH--HHHHHHHHcCCCCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEF--QQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F--~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...+||+|+||.||+|.+.|+.||||+++...   ...|  ..|+..+ .+++|||||+|+
T Consensus         7 L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~---~~~~~~e~Ei~~~-~~l~HpNIv~l~   63 (303)
T 3hmm_A            7 LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQT-VMLRHENILGFI   63 (303)
T ss_dssp             EEEEEEECSSSEEEEEEETTEEEEEEEECGGG---HHHHHHHHHHHTS-TTCCCTTBCCEE
T ss_pred             EEEEEeeCCCeEEEEEEECCEEEEEEEECccc---hhhHHHHHHHHHH-hcCCCCCCCcEE
Confidence            34689999999999999999999999996432   2334  4566667 789999999885

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=98.48  E-value=4.3e-08  Score=102.67  Aligned_cols=60  Identities=28%  Similarity=0.313  Sum_probs=51.6

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|...  |..||||++..........|.+|+.+| .+++|||||+|+
T Consensus        76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il-~~l~HpnIV~l~  137 (346)
T 4fih_A           76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIM-RDYQHENVVEMY  137 (346)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHH-HHCCCTTBCCEE
T ss_pred             cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            444568999999999999986  899999999765555567799999999 999999999875

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=98.46  E-value=4e-08  Score=100.87  Aligned_cols=61  Identities=25%  Similarity=0.432  Sum_probs=48.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++..... .....|.+|+.+| .+++|||||+++
T Consensus         6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il-~~l~HpnIV~~~   69 (299)
T 4g31_A            6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKAL-AKLEHPGIVRYF   69 (299)
T ss_dssp             HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            4666778999999999999986  89999999964332 2346799999999 999999999875

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=98.45  E-value=8.4e-08  Score=103.06  Aligned_cols=61  Identities=28%  Similarity=0.300  Sum_probs=53.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++..........|.+|+.+| .+++|||||+|+
T Consensus       152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il-~~l~HpnIV~l~  214 (423)
T 4fie_A          152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIM-RDYQHENVVEMY  214 (423)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHH-HhCCCCCCCceE
Confidence            3555568999999999999986  899999999766666677899999999 999999999885

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=98.43  E-value=1e-07  Score=97.50  Aligned_cols=56  Identities=27%  Similarity=0.442  Sum_probs=47.1

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||+|+||.||+|...  |..||||++....  ......|.+|+.+| .+++|||||+|+
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il-~~l~HpnIV~~~   91 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEML-KGLQHPNIVRFY   91 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            46999999999999987  7899999996432  22346799999999 999999999875

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.42  E-value=9.3e-08  Score=97.93  Aligned_cols=74  Identities=41%  Similarity=0.637  Sum_probs=63.7

Q ss_pred             cccCHHHHHHhhcCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          516 SDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       516 ~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+++.++..++++|.....||+|+||.||+|... |..||||++..........|.+|+.++ .+++|||||+++
T Consensus        27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~  101 (321)
T 2qkw_B           27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETL-SFCRHPHLVSLI  101 (321)
T ss_dssp             ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGG-GSCCCTTBCCEE
T ss_pred             eeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            45667777889999999999999999999999987 899999999776666678899999999 999999999874

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=98.42  E-value=9.6e-08  Score=100.19  Aligned_cols=62  Identities=24%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||+++....  .....|.+|+.+| .+++|||||+++
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il-~~l~HpnIV~~~   89 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVL-ANMKHPNIVQYR   89 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHH-HHCCCCCCCcEE
Confidence            35666678999999999999876  89999999965432  2246799999999 999999999875

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=98.40  E-value=2e-07  Score=95.50  Aligned_cols=76  Identities=36%  Similarity=0.527  Sum_probs=65.1

Q ss_pred             cccccCHHHHHHhhcCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          514 FFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       514 ~~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ....|++.++..++++|.....||+|+||.||+|... |..||||++.... ......|.+|+.++ .+++|||||+++
T Consensus        16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   93 (326)
T 3uim_A           16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLLRLR   93 (326)
T ss_dssp             CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGG-GTCCCTTBCCCC
T ss_pred             ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHH-HhccCCCccceE
Confidence            3678999999999999999999999999999999876 8999999996643 23345799999999 999999999875

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.37  E-value=3.1e-07  Score=94.50  Aligned_cols=74  Identities=27%  Similarity=0.333  Sum_probs=62.6

Q ss_pred             cccCHHHHHHhhcC----------CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCC
Q 007740          516 SDFSFSEIEGATHN----------FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFH  583 (591)
Q Consensus       516 ~~~s~~el~~aT~~----------F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrH  583 (591)
                      ..|+++++..+++.          |.....||+|+||.||+|...  |..||||++..........|.+|+.++ .+++|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h  101 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIM-RDYQH  101 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHH-TTCCC
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHH-HhCCC
Confidence            46889999999875          444568999999999999986  899999999776666678899999999 99999


Q ss_pred             CCccccc
Q 007740          584 FNLVDSF  590 (591)
Q Consensus       584 pNLV~li  590 (591)
                      ||||+++
T Consensus       102 ~niv~~~  108 (321)
T 2c30_A          102 FNVVEMY  108 (321)
T ss_dssp             TTBCCEE
T ss_pred             CCcceEE
Confidence            9999874

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=98.36  E-value=1.7e-07  Score=95.17  Aligned_cols=62  Identities=16%  Similarity=0.364  Sum_probs=47.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||+++...   ......|.+|+.+| .+++|||||+++
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il-~~l~HpnIv~~~   79 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYL-RLLRHPHIIKLY   79 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHH-HHCCCCCCCeEE
Confidence            46777789999999999999875  8999999996532   23356799999999 999999999875

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=98.33  E-value=1.6e-07  Score=96.91  Aligned_cols=62  Identities=19%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++...   .......|.+|+.+| .+++|||||+|+
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~   98 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVM-SRLDHPFFVKLY   98 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            35777789999999999999986  889999999542   233467799999999 999999999875

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=98.26  E-value=4.1e-07  Score=97.08  Aligned_cols=61  Identities=23%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++.....  .....+.+|+.+| .+++|||||+|+
T Consensus        55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il-~~l~HpnIv~l~  119 (398)
T 4b99_A           55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKIL-KHFKHDNIIAIK  119 (398)
T ss_dssp             SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHH-HhcCCCCcceEe
Confidence            4666678999999999999986  89999999964322  2245689999999 999999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=98.21  E-value=3.5e-07  Score=96.09  Aligned_cols=69  Identities=22%  Similarity=0.286  Sum_probs=53.3

Q ss_pred             HHHHHhhcCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCC-CCccccc
Q 007740          521 SEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFH-FNLVDSF  590 (591)
Q Consensus       521 ~el~~aT~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrH-pNLV~li  590 (591)
                      .+.+...++|.....||+|+||.||+|.+.+       +.||||++...... ....|.+|+.+| .+++| ||||+|+
T Consensus        57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il-~~l~hhpnIV~l~  134 (353)
T 4ase_A           57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL-IHIGHHLNVVNLL  134 (353)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHH-HHcCCCCcEEEEE
Confidence            3333344567777889999999999998753       57999999764432 246799999999 99965 9999885

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=98.20  E-value=4.7e-07  Score=94.46  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||+|...  |..||||+++....     +.+|+.++ .+++|||||+|+
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il-~~l~HpnIV~l~  116 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVAC-AGLSSPRIVPLY  116 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTT-TTCCCTTBCCEE
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHH-HhCCCCCCCcEE
Confidence            44555678999999999999986  89999999965322     35799999 999999999875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=98.05  E-value=2e-06  Score=87.64  Aligned_cols=62  Identities=24%  Similarity=0.418  Sum_probs=50.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++.... ......|.+|+.++ .+++|||||+++
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~   70 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKAL-AKLEHPGIVRYF   70 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHH-TSCCCTTBCCEE
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            34666678999999999999986  7899999996433 23357799999999 999999999875

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.04  E-value=1.2e-06  Score=97.72  Aligned_cols=62  Identities=19%  Similarity=0.303  Sum_probs=52.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++..........+.+|+.+| ..++|||||+|+
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il-~~l~hpnIv~l~  220 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTM-SVLRHPTLVNLH  220 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHH-HHTCCTTBCCEE
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            45666778999999999999986  899999999654444456789999999 999999999875

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=98.02  E-value=5.3e-07  Score=92.72  Aligned_cols=61  Identities=16%  Similarity=0.217  Sum_probs=43.5

Q ss_pred             CCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...     +..||||+++...  ......|.+|+.+| .+++|||||+++
T Consensus        25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~   92 (304)
T 3ubd_A           25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDIL-VEVNHPFIVKLH   92 (304)
T ss_dssp             GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCC-CCCCCTTEECEE
T ss_pred             ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHH-HHCCCCCCCeEE
Confidence            4666778999999999999762     5789999996532  12235689999999 999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.01  E-value=3.4e-06  Score=91.08  Aligned_cols=58  Identities=26%  Similarity=0.403  Sum_probs=50.7

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|.+.|..||||++....  ....|.+|+.++ .+++|||||+++
T Consensus       195 ~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l-~~l~h~niv~~~  252 (450)
T 1k9a_A          195 LKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVM-TQLRHSNLVQLL  252 (450)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTEEEEEEEESSCT--TSHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             eEEEeeecCcCCeeEEEEEecCCeEEEEEeCCch--HHHHHHHHHHHH-HhccCCCEEEEE
Confidence            4445689999999999999999999999997643  457899999999 999999999875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=98.00  E-value=2.5e-06  Score=86.65  Aligned_cols=61  Identities=20%  Similarity=0.222  Sum_probs=51.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||+|.+..........|.+|+.++ .+++|||||+++
T Consensus        11 ~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   73 (310)
T 3s95_A           11 DLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVM-RCLEHPNVLKFI   73 (310)
T ss_dssp             GEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             HeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHH-HhCCCcCcccEE
Confidence            4555678999999999999986  789999998665445567899999999 999999999875

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=98.00  E-value=3.8e-06  Score=87.23  Aligned_cols=71  Identities=20%  Similarity=0.298  Sum_probs=58.7

Q ss_pred             CHHHHHHhhcCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCC-----------hhHHHHHHHHHHcCCCCCCc
Q 007740          519 SFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQG-----------PSEFQQEVGAYESFIFHFNL  586 (591)
Q Consensus       519 s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~-----------~~~F~~Ev~il~s~lrHpNL  586 (591)
                      .+.++...+++|.....||.|+||.||+|... |..||||++.......           ...|.+|+.++ .+++||||
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i   91 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLL-NHFHHPNI   91 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHH-HHCCCTTB
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHH-HhCCCcCc
Confidence            35677778888998999999999999999876 8999999995432211           26799999999 99999999


Q ss_pred             cccc
Q 007740          587 VDSF  590 (591)
Q Consensus       587 V~li  590 (591)
                      |+++
T Consensus        92 v~~~   95 (362)
T 3pg1_A           92 LGLR   95 (362)
T ss_dssp             CCCS
T ss_pred             ccee
Confidence            9874

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=97.96  E-value=3.8e-06  Score=85.82  Aligned_cols=63  Identities=25%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             hcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...|..||||++......  ....|.+|+.++ .+++|||||+++
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~  100 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIM-KRLRHPNIVLFM  100 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            345666778999999999999999999999999654322  245799999999 999999999875

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=97.96  E-value=3e-06  Score=83.57  Aligned_cols=61  Identities=18%  Similarity=0.337  Sum_probs=51.0

Q ss_pred             CCCcCCccccccceeEEEEEEcCeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...|..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   73 (271)
T 3kmu_A           11 QLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRL-RIFSHPNVLPVL   73 (271)
T ss_dssp             GCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGG-CCCSCTTEECEE
T ss_pred             HhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHH-HhcCCCchhheE
Confidence            355567899999999999999999999999965432  2346799999999 999999999875

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=97.96  E-value=3e-06  Score=85.27  Aligned_cols=60  Identities=22%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             CCcCCccccccceeEEEEEE------cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLL------RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l------~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++.+      .|..||||++..........|.+|+.++ .+++|||||+++
T Consensus        12 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   77 (295)
T 3ugc_A           12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL-KSLQHDNIVKYK   77 (295)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            44456899999999999986      2689999999765444457799999999 999999999874

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=97.95  E-value=5.8e-06  Score=89.27  Aligned_cols=63  Identities=24%  Similarity=0.416  Sum_probs=53.7

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..++|.....||+|+||.||+|.+. +..||||++.... .....|.+|+.++ .+++|||||+++
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~h~~iv~l~  249 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVM-KTLQHDKLVKLH  249 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHH-hhCCCCCEeeEE
Confidence            3455666789999999999999997 7899999997643 3568899999999 999999999874

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.94  E-value=9.9e-06  Score=81.13  Aligned_cols=60  Identities=22%  Similarity=0.381  Sum_probs=49.5

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|...  +..||||.+..........|.+|+.++ .+++|||||+++
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   85 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALH-KHLKHKNIVQYL   85 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHH-HhCCCCCEeeEe
Confidence            455568999999999999975  789999999766555567899999999 999999999874

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=97.92  E-value=6.1e-06  Score=83.64  Aligned_cols=62  Identities=19%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||++...  |..||||++..........|.+|+.++ .+++|||||+++
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   83 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVM-RENKNPNIVNYL   83 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHH-hcCCCCCCCeEe
Confidence            34556678999999999999864  789999999765555677899999999 999999999875

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=97.91  E-value=9e-06  Score=81.31  Aligned_cols=62  Identities=37%  Similarity=0.474  Sum_probs=50.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC-------hhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG-------PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~-------~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  +..||||++.......       ...|.+|+.++ .+++||||++++
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   89 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIM-SNLNHPNIVKLY   89 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHH-HhCCCCCchhhh
Confidence            44556678999999999999985  7899999996543322       26799999999 999999999875

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=97.91  E-value=5e-06  Score=84.64  Aligned_cols=58  Identities=26%  Similarity=0.401  Sum_probs=49.8

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...+..||||.+...  .....|.+|+.++ .+++|||||+++
T Consensus        10 ~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~--~~~~~~~~E~~~l-~~l~hp~iv~~~   67 (307)
T 2eva_A           10 IEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESE--SERKAFIVELRQL-SRVNHPNIVKLY   67 (307)
T ss_dssp             EEEEEEEECCSSSEEEEEEETTEEEEEEECSST--THHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             eeeeeEeecCCCceEEEEEECCeeEEEEEecCh--hHHHHHHHHHHHH-hcCCCCCcCeEE
Confidence            445568999999999999999999999999643  2356799999999 999999999874

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=97.89  E-value=7.6e-06  Score=84.10  Aligned_cols=60  Identities=27%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             CCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...     +..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        51 y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~  116 (325)
T 3kul_A           51 IHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIM-GQFDHPNIIRLE  116 (325)
T ss_dssp             EEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             eEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            334578999999999999984     35699999965422 2346799999999 999999999875

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=97.88  E-value=1.1e-05  Score=81.68  Aligned_cols=61  Identities=15%  Similarity=0.067  Sum_probs=51.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++.......   ...|.+|+.++ .+++|||||+++
T Consensus        32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l-~~l~hp~iv~~~   97 (286)
T 3uqc_A           32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRL-SRIDKPGVARVL   97 (286)
T ss_dssp             TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHH-hcCCCCCcceee
Confidence            3555678999999999999986  7999999997654332   36799999999 999999999875

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=97.87  E-value=7.2e-06  Score=82.70  Aligned_cols=62  Identities=23%  Similarity=0.299  Sum_probs=47.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--------------------------CChhHHHHHHHHHHc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--------------------------QGPSEFQQEVGAYES  579 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--------------------------~~~~~F~~Ev~il~s  579 (591)
                      ++|.....||+|+||.||++...  |..||||++.....                          .....|.+|+.++ .
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~   91 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL-K   91 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH-H
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH-H
Confidence            44666678999999999999875  78999999965321                          1135789999999 9


Q ss_pred             CCCCCCccccc
Q 007740          580 FIFHFNLVDSF  590 (591)
Q Consensus       580 ~lrHpNLV~li  590 (591)
                      +++|||||+++
T Consensus        92 ~l~h~~iv~~~  102 (298)
T 2zv2_A           92 KLDHPNVVKLV  102 (298)
T ss_dssp             TCCCTTBCCEE
T ss_pred             hCCCCCCCeEE
Confidence            99999999874

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=97.87  E-value=3.5e-06  Score=86.38  Aligned_cols=61  Identities=18%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             cCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||+|...|..||||++.... .....+..|+.++ .+++|||||+++
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~hpniv~~~   84 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQD-KQSWQNEYEVYSL-PGMKHENILQFI   84 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGG-HHHHHHHHHHHTS-TTCCCTTBCCEE
T ss_pred             hhchhhheecccCceEEEEEEECCCEEEEEEeecCc-hHHHHHHHHHHHH-hcCCCCCchhhc
Confidence            345666789999999999999999999999995432 2234567789999 999999999875

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=97.86  E-value=1.1e-05  Score=81.15  Aligned_cols=61  Identities=31%  Similarity=0.413  Sum_probs=50.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++.....  .....+.+|+.++ .+++|||||+++
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   67 (292)
T 3o0g_A            3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL-KELKHKNIVRLH   67 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHH-hcCCCCCEeeEE
Confidence            4555678999999999999986  78999999965432  2246789999999 999999999874

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=97.85  E-value=7.6e-06  Score=81.02  Aligned_cols=62  Identities=23%  Similarity=0.357  Sum_probs=49.2

Q ss_pred             cCCCcCCccccccceeEEEEEEcCeEEEEEEccCCC----CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHS----LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~----~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...|..||||++....    ......|.+|+.++ ..++||||++++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   72 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLF-AMLKHPNIIALR   72 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHH-HhcCCCCEeeEE
Confidence            345566789999999999999999999999996532    23357799999999 999999999874

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=97.85  E-value=5.3e-06  Score=87.31  Aligned_cols=57  Identities=19%  Similarity=0.396  Sum_probs=44.4

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||+|+||.||+|...  |..||||++..........|.+|+.++ .+++|||||+++
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~~~  152 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVM-NQLDHANLIQLY  152 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            457999999999999885  789999999765444567899999999 999999999875

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=97.85  E-value=1.3e-05  Score=81.83  Aligned_cols=62  Identities=31%  Similarity=0.460  Sum_probs=40.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.+.... ......|.+|+.++ .+++|||||+++
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   69 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLM-KELKHENIVRLY   69 (317)
T ss_dssp             --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHH-TTCCBTTBCCEE
T ss_pred             cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHH-HhcCCCCcceEE
Confidence            45666778999999999999876  7899999996543 23357799999999 999999999875

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=97.85  E-value=5.3e-06  Score=87.27  Aligned_cols=62  Identities=24%  Similarity=0.343  Sum_probs=50.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||+|+||.||+|...     +..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~  112 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM-GQFDHPNIIRLE  112 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            35777889999999999999874     56899999965422 2346799999999 999999999874

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.84  E-value=1.1e-05  Score=80.04  Aligned_cols=60  Identities=23%  Similarity=0.342  Sum_probs=50.2

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|... +..||||++.... .....|.+|+.++ .+++||||++++
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~h~~i~~~~   71 (269)
T 4hcu_A           11 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVM-MKLSHPKLVQLY   71 (269)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            3445568999999999999986 7889999996543 3457899999999 999999999874

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=97.84  E-value=6.1e-06  Score=83.51  Aligned_cols=61  Identities=23%  Similarity=0.282  Sum_probs=46.7

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||.|+||.||+|...  |..||||++..........|.+|+.++ .+++|||||+++
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   74 (320)
T 2i6l_A           12 RYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKII-RRLDHDNIVKVF   74 (320)
T ss_dssp             TEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             ceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHH-HhcCCCCeeEEE
Confidence            4555678999999999999987  799999999765444457799999999 999999999874

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=97.83  E-value=9.7e-06  Score=80.77  Aligned_cols=59  Identities=25%  Similarity=0.401  Sum_probs=49.9

Q ss_pred             CCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...|..||||.+....  ....|.+|+.++ .+++|||||+++
T Consensus        22 ~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l-~~l~h~~iv~~~   80 (278)
T 1byg_A           22 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVM-TQLRHSNLVQLL   80 (278)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC----HHHHHTHHHH-TTCCCTTBCCEE
T ss_pred             hceEEeEEecCCCceEEEEEEcCCEEEEEEecchh--HHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            45556789999999999999999999999996543  457899999999 999999999874

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=97.83  E-value=9.1e-06  Score=88.87  Aligned_cols=61  Identities=31%  Similarity=0.523  Sum_probs=52.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||+|+||.||+|.+.  +..||||.+.... .....|.+|+.+| .+++|||||+++
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~hpniv~l~  282 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVM-KEIKHPNLVQLL  282 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHH-HhcCCCCEeeEE
Confidence            44666778999999999999997  7899999996543 3467899999999 999999999875

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=97.83  E-value=9.4e-06  Score=87.63  Aligned_cols=61  Identities=30%  Similarity=0.536  Sum_probs=51.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|... +..||||++.... .....|.+|+.++ .+++|||||+++
T Consensus       184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~hp~iv~~~  245 (452)
T 1fmk_A          184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVM-KKLRHEKLVQLY  245 (452)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            44566678999999999999998 5789999997643 3467899999999 999999999875

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=97.82  E-value=1e-05  Score=81.44  Aligned_cols=62  Identities=18%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...  |..||+|.+..........|.+|+.++ .+++||||++++
T Consensus        19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   82 (302)
T 2j7t_A           19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEIL-ATCDHPYIVKLL   82 (302)
T ss_dssp             GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHH-hcCCCCCEeeee
Confidence            34556678999999999999986  789999999776666678899999999 999999999874

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=97.81  E-value=1.1e-05  Score=84.93  Aligned_cols=62  Identities=24%  Similarity=0.347  Sum_probs=49.8

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ..+.|.....||+|+||.||+|...     +..||||.+...  .....+.+|+.+| ..+ +|||||+|+
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l-~~~~~h~nIv~l~   86 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCL-TVAGGQDNVMGVK   86 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHH-HHTCSBTTBCCCS
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHH-HHhcCCCCCceEE
Confidence            3456777789999999999999753     478999998653  2356789999999 877 699999874

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=97.81  E-value=7.9e-06  Score=81.28  Aligned_cols=62  Identities=18%  Similarity=0.336  Sum_probs=52.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...  +..||+|++..........|.+|+.++ .+++||||++++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   72 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIM-KSLDHPNIIRLY   72 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            34666678999999999999987  578999999765556678899999999 999999999874

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=97.80  E-value=1.4e-05  Score=83.84  Aligned_cols=62  Identities=18%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC------ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ------GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~------~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||++...  |..||||.+......      ....|.+|+.++ .+++|||||+++
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~l~   81 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSIL-RQVLHPNIITLH   81 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHH-HhCCCcCCCcEE
Confidence            45666778999999999999986  789999999653321      246799999999 999999999874

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=97.79  E-value=9.4e-06  Score=82.82  Aligned_cols=62  Identities=27%  Similarity=0.378  Sum_probs=48.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++... |..||||++......  ....|.+|+.++ .+++|||||+++
T Consensus        21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   85 (311)
T 3niz_A           21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLL-KELHHPNIVSLI   85 (311)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHH-HHcCCCCEeeee
Confidence            34555678999999999999986 899999999653322  246789999999 999999999875

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=97.79  E-value=6.5e-06  Score=85.15  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=57.8

Q ss_pred             ccCHHHHHHhhcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCcc
Q 007740          517 DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLV  587 (591)
Q Consensus       517 ~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV  587 (591)
                      .+....+....++|.....||+|+||.||+|...       +..||||++..... .....|.+|+.++ .++ +|||||
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~hpniv   89 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL-IHIGHHLNVV   89 (359)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHCCCTTBC
T ss_pred             CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHH-HhhcCCccee
Confidence            3455566666788888899999999999999853       37899999965432 2245699999999 988 899999


Q ss_pred             ccc
Q 007740          588 DSF  590 (591)
Q Consensus       588 ~li  590 (591)
                      +++
T Consensus        90 ~~~   92 (359)
T 3vhe_A           90 NLL   92 (359)
T ss_dssp             CEE
T ss_pred             eee
Confidence            875

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=97.78  E-value=1.3e-05  Score=86.42  Aligned_cols=62  Identities=19%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||++...  |..||||++.....  .....|.+|+.+| .+++|||||+++
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~  118 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAIL-NRLNHDHVVKVL  118 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHH-HhCCCCCCCceE
Confidence            45777789999999999999876  78999999954322  2246789999999 999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=97.78  E-value=1.3e-05  Score=88.63  Aligned_cols=61  Identities=30%  Similarity=0.536  Sum_probs=51.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|.+. +..||||++.... .....|.+|+.+| .+++|||||+++
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~hpniv~~~  328 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVM-KKLRHEKLVQLY  328 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            44556678999999999999998 5789999997643 3467899999999 999999999875

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=97.78  E-value=9.4e-06  Score=82.77  Aligned_cols=60  Identities=23%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|...  |..||||++.... ......|.+|+.++ .+++|||||+++
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   73 (319)
T 4euu_A           11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL-KKLNHKNIVKLF   73 (319)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             EEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHH-HhcCCCCcceEE
Confidence            455678999999999999987  7899999996532 33467789999999 999999999874

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=97.78  E-value=1.3e-05  Score=82.27  Aligned_cols=65  Identities=25%  Similarity=0.366  Sum_probs=53.4

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...++|.....||+|+||.||+|...+       ..||||++..... .....|.+|+.++ .+++|||||+++
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~  116 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM-AEFDNPNIVKLL  116 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            345677778899999999999999863       7899999975432 2246799999999 999999999875

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=97.78  E-value=6.5e-06  Score=86.51  Aligned_cols=62  Identities=26%  Similarity=0.358  Sum_probs=50.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus       114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~  178 (377)
T 3cbl_A          114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARIL-KQYSHPNIVRLI  178 (377)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHH-TTCCCTTBCCEE
T ss_pred             HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            34555678999999999999996  78999999965422 1235689999999 999999999875

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=97.77  E-value=1.9e-05  Score=78.75  Aligned_cols=60  Identities=28%  Similarity=0.419  Sum_probs=47.4

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||.|+||.||+|... +..||||++.... .....|.+|+.++ .+++||||++++
T Consensus        25 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~h~~i~~~~   85 (283)
T 3gen_A           25 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVM-MNLSHEKLVQLY   85 (283)
T ss_dssp             GEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             HHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHH-hcCCCCCEeeEE
Confidence            4555678999999999999988 6789999996543 3457899999999 999999999874

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=97.77  E-value=1.2e-05  Score=80.72  Aligned_cols=61  Identities=28%  Similarity=0.379  Sum_probs=50.1

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++... |..||||++....  ......|.+|+.++ .+++|||||+++
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   66 (288)
T 1ob3_A            3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISIL-KELKHSNIVKLY   66 (288)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGG-GGCCCTTBCCEE
T ss_pred             cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHH-HhcCCCCEeeee
Confidence            3455678999999999999987 8899999995432  22346799999999 999999999874

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=97.75  E-value=8.1e-06  Score=82.89  Aligned_cols=62  Identities=23%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++..........|.+|+.++ .+++|||||+++
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   92 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMH-RLFNHPNILRLV   92 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHH-HTCCCTTBCCCC
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHH-hhcCCCCeeeEE
Confidence            45666789999999999999974  899999998654444467799999999 999999999874

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=97.75  E-value=1.5e-05  Score=81.10  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||++...  |..||||++.......   ...|.+|+.++ .+++|||||+++
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   78 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNA-AALNHPAIVAVY   78 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTC-CCCCCTTBCCEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHH-HcCCCCCcceEE
Confidence            34555678999999999999974  7999999997643333   35689999999 999999999875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=97.74  E-value=1.1e-05  Score=80.62  Aligned_cols=61  Identities=23%  Similarity=0.352  Sum_probs=50.5

Q ss_pred             CCCcCCccccccceeEEEEEEc--C-------eEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--H-------MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g-------~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  +       ..||+|.+..........|.+|+.++ .+++|||||+++
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   78 (289)
T 4fvq_A            9 DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMM-SKLSHKHLVLNY   78 (289)
T ss_dssp             GEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHH-HTSCCTTBCCEE
T ss_pred             HeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            3555678999999999999875  3       57999999665555567899999999 999999999874

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=97.74  E-value=1.5e-05  Score=78.75  Aligned_cols=60  Identities=27%  Similarity=0.399  Sum_probs=50.2

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|... +..||||++.... .....|.+|+.++ .+++|||||+++
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~h~~i~~~~   69 (268)
T 3sxs_A            9 EITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTM-MKLSHPKLVKFY   69 (268)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             heeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            4555678999999999999988 5689999996543 3457899999999 999999999875

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=97.74  E-value=8.5e-06  Score=84.18  Aligned_cols=63  Identities=22%  Similarity=0.296  Sum_probs=51.5

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...  |..||||++....  ......|.+|+.++ ..++|||||+++
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~l~   80 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIM-KILNHPNIVKLF   80 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            346666789999999999999974  8999999995432  22345688999999 999999999875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=97.74  E-value=1.7e-05  Score=78.88  Aligned_cols=61  Identities=26%  Similarity=0.489  Sum_probs=51.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|... +..||||.+.... .....|.+|+.++ .+++||||++++
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~h~~i~~~~   74 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLM-KQLQHQRLVRLY   74 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHH-HhCCCcCcceEE
Confidence            34555678999999999999987 6789999996543 3467899999999 999999999874

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=97.74  E-value=1.8e-05  Score=83.23  Aligned_cols=62  Identities=15%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             HHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          524 EGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       524 ~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ....++|.....||.|+||.||++...  |..||||++.....    .+.+|+.++ ..++|||||+++
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il-~~l~hpnIv~l~   66 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIM-KVLDHVNIIKLV   66 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHH-TTCCCTTBCCEE
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHH-HHcCCCCccchh
Confidence            344566777889999999999999875  79999999865432    234799999 999999999875

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=97.74  E-value=1.5e-05  Score=79.94  Aligned_cols=59  Identities=20%  Similarity=0.418  Sum_probs=47.7

Q ss_pred             cCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcC--CCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESF--IFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~--lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...|..||||++...   ....|..|.+++ ..  ++|||||+++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~-~~~~l~h~niv~~~   68 (301)
T 3q4u_A            8 RDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSR---DEKSWFRETELY-NTVMLRHENILGFI   68 (301)
T ss_dssp             GGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGG---GHHHHHHHHHHH-HHTCCCCTTBCCEE
T ss_pred             CcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccc---cchhhHHHHHHH-HHhhccCcCeeeEE
Confidence            45666789999999999999999999999999542   345677777666 54  8999999875

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=97.74  E-value=1.3e-05  Score=81.78  Aligned_cols=64  Identities=23%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--C---eEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--H---MQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g---~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..++|.....||+|+||.||+|...  +   ..||||++...  .......|.+|+.++ .+++|||||+++
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   91 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACM-KEFDHPHVAKLV   91 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHH-TTCCCTTBCCCC
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHH-HHCCCCceehhh
Confidence            3456777789999999999999876  2   27999999654  233357799999999 999999999875

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=97.74  E-value=1.5e-05  Score=82.00  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=50.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC------CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL------QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~------~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||.+.....      .....|.+|+.++ .+++|||||+++
T Consensus        12 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   80 (326)
T 2y0a_A           12 YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSIL-KEIQHPNVITLH   80 (326)
T ss_dssp             HEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            3566678999999999999986  78999999965322      1357799999999 999999999874

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=97.73  E-value=8.5e-06  Score=83.79  Aligned_cols=68  Identities=18%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             HHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC-----CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          522 EIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH-----SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       522 el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~-----~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+....++|.....||+|+||.||++...  +..||||++...     .......|.+|+.++ .+++|||||+++
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~   94 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLM-KKLHHPNIARLY   94 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHH-HhCCCCCcceee
Confidence            34455666888889999999999999886  689999998542     233457899999999 999999999875

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=97.73  E-value=5.3e-06  Score=89.50  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             CHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          519 SFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       519 s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+.++...+++|....+||+|+||.||+|...  |..||||++...   .......|.+|+.++ ..++|||||+++
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il-~~~~hp~Iv~l~  140 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVL-VNGDSKWITTLH  140 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHH-HHSCTTTBCCEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            34566666788888899999999999999987  689999999541   122234589999999 999999999875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=97.73  E-value=1.7e-05  Score=81.29  Aligned_cols=60  Identities=22%  Similarity=0.285  Sum_probs=50.5

Q ss_pred             CCcCCccccccceeEEEEEE------cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLL------RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l------~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++.+      .|..||||++..........|.+|+.++ .+++|||||+++
T Consensus        43 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~  108 (326)
T 2w1i_A           43 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL-KSLQHDNIVKYK  108 (326)
T ss_dssp             EEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             ceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            44567899999999999985      2789999999775555567899999999 999999999864

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=97.71  E-value=7.6e-06  Score=81.79  Aligned_cols=62  Identities=31%  Similarity=0.514  Sum_probs=52.0

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||+|...  +..||||.+.... .....|.+|+.++ .+++||||++++
T Consensus        12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l-~~l~h~~i~~~~   75 (288)
T 3kfa_A           12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVM-KEIKHPNLVQLL   75 (288)
T ss_dssp             GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            445666778999999999999987  7899999996532 3457899999999 999999999874

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=97.70  E-value=1.7e-05  Score=82.52  Aligned_cols=61  Identities=25%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++.......   ...|.+|+.++ .+++|||||+++
T Consensus        55 ~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~  120 (348)
T 1u5q_A           55 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL-QKLRHPNTIQYR  120 (348)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             heeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            3666778999999999999874  8999999996543322   35689999999 999999999874

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.70  E-value=2.1e-05  Score=81.04  Aligned_cols=75  Identities=29%  Similarity=0.437  Sum_probs=47.0

Q ss_pred             ccccCHHHHHHhhcCCCc---------CCccccccceeEEEEEEcC------eEEEEEEccCCCC-CChhHHHHHHHHHH
Q 007740          515 FSDFSFSEIEGATHNFDP---------SLKIGEGGYGSIYKGLLRH------MQVAIKMLHPHSL-QGPSEFQQEVGAYE  578 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~---------~~~iG~G~~G~Vykg~l~g------~~VAVK~L~~~~~-~~~~~F~~Ev~il~  578 (591)
                      +..+...+...++..|..         ...||+|+||.||+|....      ..||||.+..... .....|.+|+.++ 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-  100 (333)
T 1mqb_A           22 FQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIM-  100 (333)
T ss_dssp             ----------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHH-
T ss_pred             ccccccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHH-
Confidence            334444555555555543         4689999999999998752      3599999965432 2245699999999 


Q ss_pred             cCCCCCCccccc
Q 007740          579 SFIFHFNLVDSF  590 (591)
Q Consensus       579 s~lrHpNLV~li  590 (591)
                      .+++|||||+++
T Consensus       101 ~~l~h~~iv~~~  112 (333)
T 1mqb_A          101 GQFSHHNIIRLE  112 (333)
T ss_dssp             HTCCCTTBCCEE
T ss_pred             HhCCCCCCCcEE
Confidence            999999999874

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=97.70  E-value=1.4e-05  Score=84.60  Aligned_cols=62  Identities=13%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||+|.+..........|.+|+.++ .+++|||||+++
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~~~  114 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIM-NQLHHPKLINLH  114 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHH-TTCCSTTBCCEE
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHH-HhCCCcCCCeEE
Confidence            45666778999999999999986  789999999654433456789999999 999999999874

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=97.70  E-value=4e-05  Score=77.70  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=47.9

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcC-CCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESF-IFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~-lrHpNLV~li  590 (591)
                      ..||+|+||.||++...  |..||||++..........|.+|+.++ .+ ++|||||+++
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~~~~h~~i~~~~   77 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEML-YQCQGHRNVLELI   77 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHH-HHTCCCTTBCCEE
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHH-HHhcCCCCeeeEE
Confidence            57999999999999865  789999999766555567899999999 77 5899999874

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=97.70  E-value=1.5e-05  Score=80.64  Aligned_cols=62  Identities=19%  Similarity=0.213  Sum_probs=48.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||++...  |..||||.+..........|.+|+.++ .+++||||++++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   72 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVL-KKIKHENIVTLE   72 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHH-HhCCCCCeeehh
Confidence            34556678999999999999986  889999999765444456799999999 999999999864

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=97.69  E-value=1.8e-05  Score=79.30  Aligned_cols=61  Identities=21%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||++... .......|.+|+.++ .+++|||||+++
T Consensus        23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   86 (285)
T 3is5_A           23 LFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVL-KSLDHPNIIKIF   86 (285)
T ss_dssp             HEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             heeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHH-HhCCCchHHhHH
Confidence            3666679999999999999986  789999999653 334467899999999 999999999875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=97.69  E-value=1.7e-05  Score=81.83  Aligned_cols=63  Identities=24%  Similarity=0.348  Sum_probs=51.6

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...  |..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   75 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKIL-KHFKHENIITIF   75 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHH-HhCcCCCcCCee
Confidence            356667789999999999999986  89999999965322 2245688999999 999999999874

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=97.68  E-value=1.3e-05  Score=83.42  Aligned_cols=62  Identities=18%  Similarity=0.291  Sum_probs=45.6

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+.|.....||+|+||.||+|...  +..||||++....  ....|.+|+.++ .+++|||||+++
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l-~~l~h~niv~~~  114 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVL-LRLSHPNIIKLK  114 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHH-HHCCCTTBCCEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHH-HhCCCCCCccee
Confidence            4456777789999999999999986  6789999996543  345788999999 999999999874

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=97.68  E-value=1.9e-05  Score=82.31  Aligned_cols=63  Identities=24%  Similarity=0.275  Sum_probs=51.5

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+.|.....||+|+||.||++...  |..||||++...... ....|.+|+.++ .+++|||||+++
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   91 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKIL-LRFRHENIIGIN   91 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHH-HHCCCTTBCCCC
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHH-HhcCCCCCccce
Confidence            445666789999999999999876  789999999653322 236789999999 999999999874

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.68  E-value=1.6e-05  Score=84.15  Aligned_cols=60  Identities=23%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|...  |..||||++.... ......|.+|+.++ .+++|||||+++
T Consensus        11 y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~~~   73 (396)
T 4eut_A           11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL-KKLNHKNIVKLF   73 (396)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             eEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHH-HhcCCCCCCeEE
Confidence            455678999999999999987  7899999996532 33457789999999 999999999875

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=97.68  E-value=2.7e-05  Score=78.67  Aligned_cols=61  Identities=26%  Similarity=0.370  Sum_probs=49.5

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||.+.......   ...|.+|+.++ .+++|||||+++
T Consensus        12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~hp~iv~~~   77 (294)
T 4eqm_A           12 RYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNS-SQLSHQNIVSMI   77 (294)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHH-TTCCBTTBCCEE
T ss_pred             cEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHH-hcCCCCCCceEE
Confidence            3555678999999999999875  7899999985433222   46789999999 999999999875

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=97.68  E-value=1.5e-05  Score=85.16  Aligned_cols=63  Identities=16%  Similarity=0.241  Sum_probs=49.9

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--------CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--------LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--------~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...  |..||||++....        ......|.+|+.+| .+++|||||+++
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~l~  206 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEIL-KKLNHPCIIKIK  206 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHH-HHCCCTTBCCCC
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            456777788999999999999986  6899999985421        11223589999999 999999999874

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=97.68  E-value=1.6e-05  Score=81.63  Aligned_cols=62  Identities=24%  Similarity=0.476  Sum_probs=48.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++.... ......|.+|+.++ .+++|||||+++
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~~~   71 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN-KMLNHENVVKFY   71 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            35666678999999999999886  7899999996432 22345689999999 999999999875

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=97.67  E-value=2.3e-05  Score=79.29  Aligned_cols=61  Identities=30%  Similarity=0.328  Sum_probs=49.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++......  ....|.+|+.++ .+++|||||+++
T Consensus         4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   68 (311)
T 4agu_A            4 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRML-KQLKHPNLVNLL   68 (311)
T ss_dssp             CEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHH-HhCCCCCccchh
Confidence            4555678999999999999986  789999998654322  145688999999 999999999874

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=97.67  E-value=1.9e-05  Score=81.08  Aligned_cols=64  Identities=27%  Similarity=0.386  Sum_probs=49.8

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..++|.....||+|+||.||++...  |..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   99 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLL-KELQHRNIIELK   99 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHG-GGCCCTTBCCEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHH-HHcCCCCcceEE
Confidence            3456777789999999999999875  79999999965332  2245688999999 999999999874

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=97.67  E-value=1.5e-05  Score=83.48  Aligned_cols=62  Identities=29%  Similarity=0.405  Sum_probs=49.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|.+.       +..||||++.... ......|.+|+.++ .+++|||||+++
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~~~  140 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII-SKFNHQNIVRCI  140 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            45666778999999999999964       4689999996432 23345799999999 999999999875

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=97.67  E-value=2.5e-05  Score=81.63  Aligned_cols=61  Identities=21%  Similarity=0.182  Sum_probs=50.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||++...  |..||||++..... ....+.+|+.++ .+++|||||+++
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l-~~l~hpniv~~~   82 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINH-RSLRHPNIVRFK   82 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHH-HhCCCCCCCcEE
Confidence            34555678999999999999986  78999999965433 346799999999 999999999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=97.67  E-value=9.3e-06  Score=86.83  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=53.9

Q ss_pred             HHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          522 EIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       522 el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++....++|....+||+|+||.||++...  |..||||++...   .......|.+|+.++ ..++|||||+++
T Consensus        63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il-~~l~hp~Iv~l~  135 (410)
T 3v8s_A           63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIM-AFANSPWVVQLF  135 (410)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            34445566777789999999999999986  789999998541   122345689999999 999999999875

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=97.67  E-value=2.5e-05  Score=80.78  Aligned_cols=68  Identities=21%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             HHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          521 SEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       521 ~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .......++|.....||+|+||.||+|...  |..||||++.... .....+.+++..+ ..++|||||+++
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l-~~l~h~niv~~~   85 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDL-AVLHHPNIVQLQ   85 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHH-HHHCCTTBCCEE
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHH-HhcCCCCcccHH
Confidence            445566788988999999999999999986  7899999985543 2345688899999 889999999874

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=97.66  E-value=1.4e-05  Score=81.94  Aligned_cols=61  Identities=26%  Similarity=0.386  Sum_probs=46.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--C----eEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--H----MQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g----~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||+|+||.||+|...  |    ..||+|.+... .......|.+|+.++ .+++|||||+++
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   83 (327)
T 3poz_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM-ASVDNPHVCRLL   83 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHH-HHCCBTTBCCEE
T ss_pred             HcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            4666678999999999999874  3    34799998543 334567899999999 999999999875

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=97.66  E-value=1.7e-05  Score=81.20  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             CCCcCCccccccceeEEEEEE------cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLL------RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l------~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++.+      .|..||||++..........|.+|+.++ .+++||||++++
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   90 (327)
T 3lxl_A           24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQIL-KALHSDFIVKYR   90 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHH-HhcCCCceeEEE
Confidence            345567899999999999985      2689999999765544456799999999 999999999874

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=97.66  E-value=2.8e-05  Score=78.00  Aligned_cols=60  Identities=32%  Similarity=0.519  Sum_probs=48.6

Q ss_pred             CCCcCCccccccceeEEEEEEcCeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...+ .||||++.....  .....|.+|+.++ .+++||||++++
T Consensus        25 ~y~~~~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   86 (289)
T 3og7_A           25 QITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVL-RKTRHVNILLFM   86 (289)
T ss_dssp             SCEEEEEEEECSSEEEEEEESSS-EEEEEEESCSSCCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             ceeeeeEecCCCCeEEEEEEEcC-ceEEEEEeccCCCHHHHHHHHHHHHHH-HhCCCCcEEEEE
Confidence            45556789999999999998765 599999965432  2346799999999 999999999864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=97.66  E-value=2.2e-05  Score=82.28  Aligned_cols=62  Identities=19%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...  |..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus        25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~l~   90 (367)
T 1cm8_A           25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLL-KHMRHENVIGLL   90 (367)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHH-HHCCBTTBCCCS
T ss_pred             ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHH-HhCCCcCCCCce
Confidence            45666778999999999999985  89999999954322  1245688999999 999999999874

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=97.66  E-value=2.2e-05  Score=81.15  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-----ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-----GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-----~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+.|.....||+|+||.||+|...  |..||||++......     ....|.+|+.++ .+++|||||+++
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   78 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLL-QELSHPNIIGLL   78 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHH-hhCCCCCCCeEE
Confidence            456777789999999999999986  789999999643211     135789999999 999999999874

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=97.65  E-value=2.5e-05  Score=78.71  Aligned_cols=62  Identities=21%  Similarity=0.307  Sum_probs=51.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC----CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH----SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~----~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++...    .......|.+|+.++ .+++||||++++
T Consensus         5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   72 (305)
T 2wtk_C            5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLL-RRLRHKNVIQLV   72 (305)
T ss_dssp             CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHH-HhcCCCCeeEEE
Confidence            56777889999999999999985  789999999542    123457799999999 999999999874

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=97.65  E-value=1.7e-05  Score=83.07  Aligned_cols=63  Identities=17%  Similarity=0.374  Sum_probs=52.0

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||++...  |..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~~~   94 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC-RKLQHPNIVRLH   94 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            355777789999999999999986  78999999965432  2245689999999 999999999874

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=97.65  E-value=7.4e-06  Score=83.36  Aligned_cols=73  Identities=23%  Similarity=0.359  Sum_probs=57.0

Q ss_pred             ccCHHHHHHhhcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccc
Q 007740          517 DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVD  588 (591)
Q Consensus       517 ~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~  588 (591)
                      .+...++....++|.....||+|+||.||+|...       +..||||.+..... .....|.+|+.++ .+++||||++
T Consensus        14 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~   92 (322)
T 1p4o_A           14 VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM-KEFNCHHVVR   92 (322)
T ss_dssp             CCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHG-GGCCCTTBCC
T ss_pred             ccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHH-HhcCCCCEee
Confidence            3444555556677888889999999999999764       47899999965322 2345699999999 9999999998


Q ss_pred             cc
Q 007740          589 SF  590 (591)
Q Consensus       589 li  590 (591)
                      ++
T Consensus        93 ~~   94 (322)
T 1p4o_A           93 LL   94 (322)
T ss_dssp             EE
T ss_pred             eE
Confidence            75

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=97.65  E-value=3.8e-05  Score=81.33  Aligned_cols=55  Identities=22%  Similarity=0.319  Sum_probs=41.4

Q ss_pred             CCccccccceeEEEEEEc----CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR----HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+||+|+||.||+|...    +..||||++....  ....|.+|+.+| .+++|||||+++
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l-~~l~hpniv~~~   84 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALL-RELKHPNVISLQ   84 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHH-HHCCCTTBCCCC
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHH-HhcCCCCeeeEe
Confidence            458999999999999975    5789999996532  235799999999 999999999874

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=97.65  E-value=2.8e-05  Score=80.37  Aligned_cols=62  Identities=24%  Similarity=0.384  Sum_probs=50.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++....  ......|.+|+.++ .+++|||||+++
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   82 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL-QLLKHENVVNLI   82 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHH-HhccCCCcccHh
Confidence            34556678999999999999985  7899999985532  23356789999999 999999999874

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=97.65  E-value=8.1e-06  Score=83.24  Aligned_cols=74  Identities=23%  Similarity=0.407  Sum_probs=57.8

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          515 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ...+++.++....+.|.....||.|+||.||+|...  |..||||++.... .....|.+|+.++ .++ +||||++++
T Consensus        11 ~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l-~~l~~h~~i~~~~   87 (326)
T 2x7f_A           11 LDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINML-KKYSHHRNIATYY   87 (326)
T ss_dssp             -----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHH-HHHCCSTTBCCEE
T ss_pred             chhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHH-HhccCCCCeeeee
Confidence            445566666677788888899999999999999984  8899999996533 3457899999999 888 899999874

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=97.65  E-value=3.1e-05  Score=77.88  Aligned_cols=60  Identities=25%  Similarity=0.362  Sum_probs=48.0

Q ss_pred             CCcCCccccccceeEEEEEE------cCeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLL------RHMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l------~g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||++.+      .|..||||++.... ......|.+|+.++ .+++||||++++
T Consensus        23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   89 (302)
T 4e5w_A           23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEIL-RNLYHENIVKYK   89 (302)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHH-HhCCCCCeeeee
Confidence            44556899999999999985      26899999997543 34457899999999 999999999874

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=97.65  E-value=1.5e-05  Score=86.52  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||++...  |..||||++...  .......+.+|+.++ .+++|||||+++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~l~  127 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM-KCVNHKNIISLL  127 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHH-HHCCCTTBCCCS
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            356777788999999999999875  789999999643  222356789999999 999999999875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.64  E-value=3.3e-05  Score=76.05  Aligned_cols=60  Identities=23%  Similarity=0.342  Sum_probs=50.1

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++... +..||||.+.... .....|.+|+.++ .+++||||++++
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l-~~l~h~~i~~~~   69 (267)
T 3t9t_A            9 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVM-MKLSHPKLVQLY   69 (267)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             heeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            3445568999999999999986 7899999996543 2457899999999 999999999874

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=97.64  E-value=3.5e-05  Score=77.99  Aligned_cols=62  Identities=23%  Similarity=0.397  Sum_probs=48.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||+|+||.||+|...  |..||||++......   ....|.+|+.++ .+++||||++++
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   98 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLL-KQLNHPNVIKYY   98 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            35666778999999999999975  899999999753322   246689999999 999999999874

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=97.64  E-value=1.9e-05  Score=81.92  Aligned_cols=62  Identities=15%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||++...   .......|.+|+.++ ..++|||||+++
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~l~   75 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYL-KLLRHPHIIKLY   75 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            34555678999999999999985  789999998542   223346799999999 999999999875

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=97.64  E-value=2.4e-05  Score=77.83  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC------CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL------QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~------~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||.+.....      .....|.+|+.++ .+++||||++++
T Consensus         6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   74 (283)
T 3bhy_A            6 HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNIL-REIRHPNIITLH   74 (283)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHH-HhCCCCCeeehh
Confidence            3555678999999999999986  78999999854321      1357899999999 999999999874

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=97.63  E-value=2.8e-05  Score=77.87  Aligned_cols=57  Identities=26%  Similarity=0.437  Sum_probs=46.9

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||+|+||.||+|...  +..||+|.+....  ......|.+|+.++ .+++|||||+++
T Consensus        31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   91 (290)
T 1t4h_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEML-KGLQHPNIVRFY   91 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHH-HhCCCCCeeeee
Confidence            347999999999999886  6789999985432  22346799999999 999999999874

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=97.63  E-value=3.3e-05  Score=77.51  Aligned_cols=62  Identities=32%  Similarity=0.425  Sum_probs=48.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||.+....  ......|.+|+.++ .+++||||++++
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   68 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL-KELNHPNIVKLL   68 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHH-HHcCCCCeeeEE
Confidence            35666678999999999999986  7899999996532  23357799999999 999999999874

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=97.63  E-value=3.1e-05  Score=80.20  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=50.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++......  ....|.+|+.++ .+++|||||+++
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   89 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLL-KHMQHENVIGLL   89 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHH-HHCCCTTBCCCS
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHH-HhcCCCCcccHh
Confidence            44666678999999999999885  899999999653222  245789999999 999999999874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=97.63  E-value=4.5e-05  Score=85.75  Aligned_cols=55  Identities=25%  Similarity=0.425  Sum_probs=47.0

Q ss_pred             ccccccceeEEEEEEc----CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLR----HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .||+|+||.||+|.+.    +..||||++.... ......|.+|+.+| .+++|||||+++
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il-~~l~hpniv~l~  402 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIM-HQLDNPYIVRLI  402 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            6899999999999884    4679999997643 33567899999999 999999999875

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=97.63  E-value=1.9e-05  Score=81.90  Aligned_cols=62  Identities=18%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++...   .......+.+|+.++ .+++|||||+++
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~l~   71 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL-QNTRHPFLTALK   71 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HSCCCTTBCCEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHH-HhCCCCcCcceE
Confidence            45666788999999999999886  789999999542   233456789999999 999999999874

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=97.63  E-value=7.2e-06  Score=86.05  Aligned_cols=63  Identities=6%  Similarity=-0.035  Sum_probs=49.0

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHH---HHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEV---GAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev---~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...  |..||||++...   .......|.+|+   .++ .+++|||||+++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~~l~hpniv~~~  142 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLL-RGIKNQKQAKVH  142 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGS-TTCCSHHHHHHH
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhc-cccCCHHHHHHH
Confidence            345556678999999999999974  899999999643   223357799999   667 778999999764

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=97.62  E-value=1.8e-05  Score=78.85  Aligned_cols=62  Identities=18%  Similarity=0.372  Sum_probs=50.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||+|++.....  .....|.+|+.++ .+++||||++++
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   71 (284)
T 3kk8_A            6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC-RKLQHPNIVRLH   71 (284)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHH-HHcCCCCcCeEE
Confidence            45666778999999999999886  78999999965322  2346688999999 999999999874

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=97.62  E-value=2e-05  Score=82.71  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=47.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~~~   94 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL-KHMKHENVIGLL   94 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHH-HHCCCTTBCCCS
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            56777789999999999999875  89999999965322  2346788999999 999999999875

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=97.62  E-value=3e-05  Score=80.57  Aligned_cols=61  Identities=16%  Similarity=0.314  Sum_probs=50.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccC-----CCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHP-----HSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~-----~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||++..     ........|.+|+.++ .+++|||||+++
T Consensus        25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~~~   92 (351)
T 3c0i_A           25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC-HMLKHPHIVELL   92 (351)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            3666678999999999999886  79999999843     1122467899999999 999999999875

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=97.62  E-value=3.2e-05  Score=80.94  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++......  ....|.+|+.++ .+++|||||+++
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~  107 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLL-KHMQHENVIGLL  107 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCTTBCCCS
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHH-HhcCCCCchhhh
Confidence            56666788999999999999876  899999999653322  246789999999 999999999875

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=97.62  E-value=2.9e-05  Score=84.21  Aligned_cols=61  Identities=15%  Similarity=0.284  Sum_probs=51.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||++....   ......|.+|+.++ .+++|||||+++
T Consensus        27 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~   92 (484)
T 3nyv_A           27 RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL-KQLDHPNIMKLY   92 (484)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             ceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            3555678999999999999986  7899999995432   33467899999999 999999999875

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=97.61  E-value=2.9e-05  Score=83.22  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++.....  .....|.+|+.+| .+++|||||+++
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~nIv~l~   91 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITIL-NRLKSDYIIRLY   91 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHH-HHcCCCCcceEE
Confidence            46777789999999999999886  78999999965322  2246789999999 999999999875

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=97.61  E-value=1.9e-05  Score=81.26  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             cCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCC---h--------------hHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQG---P--------------SEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~---~--------------~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||++...|..||||.+.......   .              ..|.+|+.++ .+++||||++++
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~  109 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII-TDIKNEYCLTCE  109 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHH-TTCCCTTBCCCS
T ss_pred             CceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            456667889999999999999989999999995421111   1              7899999999 999999999875

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=97.61  E-value=1.8e-05  Score=78.81  Aligned_cols=63  Identities=21%  Similarity=0.401  Sum_probs=50.8

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||++...  +..||||++...   .......|.+|+.++ .+++||||++++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   75 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ-SHLRHPNILRLY   75 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHH-HcCCCCCCcchh
Confidence            345666778999999999999887  678999998542   122356789999999 999999999874

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=97.60  E-value=2.9e-05  Score=79.28  Aligned_cols=61  Identities=18%  Similarity=0.340  Sum_probs=50.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC------ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ------GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~------~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||.+......      ....|.+|+.++ .+++||||++++
T Consensus        13 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   81 (321)
T 2a2a_A           13 FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSIL-RQVLHHNVITLH   81 (321)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHH-HhCCCCCcceEE
Confidence            4566678999999999999986  789999999653221      356799999999 999999999874

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=97.60  E-value=2.8e-05  Score=79.79  Aligned_cols=61  Identities=11%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||+|.+.... .....|.+|+.++ .+++|||||+++
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l-~~l~hpnIv~~~   67 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISIL-NIARHRNILHLH   67 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHH-HHSCCTTBCCEE
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHH-HhCCCCCCCeEe
Confidence            45566678999999999999986  7899999986432 2345689999999 999999999874

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=97.59  E-value=2.2e-05  Score=83.23  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||++...   .......|.+|+.++ .+++|||||+++
T Consensus        16 ~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il-~~l~hp~Iv~l~   81 (384)
T 4fr4_A           16 HFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIM-QGLEHPFLVNLW   81 (384)
T ss_dssp             GEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             HeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            4555678999999999999986  689999998542   233457799999999 999999999875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=97.59  E-value=3.2e-05  Score=84.34  Aligned_cols=61  Identities=25%  Similarity=0.437  Sum_probs=47.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||++....  ......|.+|+.++ .+++|||||+++
T Consensus        38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~  102 (494)
T 3lij_A           38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVL-KLLDHPNIMKLY  102 (494)
T ss_dssp             HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            4666778999999999999986  7899999996532  33467899999999 999999999875

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=97.58  E-value=4.5e-05  Score=77.18  Aligned_cols=60  Identities=32%  Similarity=0.428  Sum_probs=46.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||.|+||.||+|...  |..||||.+....  ....|.+|+.++ .+++||||++++
T Consensus        29 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l-~~l~h~~i~~~~   90 (314)
T 3com_A           29 EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIM-QQCDSPHVVKYY   90 (314)
T ss_dssp             -CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHH-HhCCCCCCccEE
Confidence            45666778999999999999986  7899999996543  356899999999 999999999875

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=97.58  E-value=1.4e-05  Score=81.35  Aligned_cols=62  Identities=21%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      .+|....+||+|+||.||++...  |..||||++..........|.+|+.++ .++. |||||+++
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~~h~~iv~~~   92 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFM-KKLSGHPNIVQFC   92 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHH-HHHTTSTTBCCEE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHH-HHhccCCChhhcc
Confidence            45666789999999999999985  789999998655444456789999999 8886 99999874

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=97.58  E-value=2.6e-05  Score=80.14  Aligned_cols=62  Identities=21%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             cCCCcCCccccccceeEEEEEE-----cCeEEEEEEccCCC----CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLL-----RHMQVAIKMLHPHS----LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l-----~g~~VAVK~L~~~~----~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++..     .|..||||++....    ......|.+|+.++ .+++|||||+++
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   87 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNIL-EEVKHPFIVDLI   87 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHH-HHCCCTTBCCEE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHH-HhCCCCCcccee
Confidence            3466667899999999999987     27899999996532    22345688999999 999999999875

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.58  E-value=8.9e-06  Score=82.91  Aligned_cols=63  Identities=22%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||+|...  |..||||++......  ....+..|+..+....+|||||+++
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~  123 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLE  123 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            45666778999999999999986  899999998653322  2344666776661344999999874

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=97.57  E-value=3.2e-05  Score=76.81  Aligned_cols=62  Identities=23%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||+|.+.....  .....|.+|+.++ .+++||||++++
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   71 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLL-RELKHPNIVRYY   71 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHH-HhcCCCCCCeEE
Confidence            34555678999999999999986  78999999965432  2246689999999 999999999874

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=97.57  E-value=4.1e-05  Score=83.66  Aligned_cols=64  Identities=22%  Similarity=0.345  Sum_probs=49.7

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-------------CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-------------QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-------------~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..+.|....+||+|+||.||++...  |..||||++.....             .....|.+|+.++ .+++|||||+++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~  112 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLL-KSLDHPNIIKLF  112 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            3456777789999999999999986  68999999964321             2346799999999 999999999875

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=97.57  E-value=2.6e-05  Score=81.81  Aligned_cols=62  Identities=23%  Similarity=0.377  Sum_probs=49.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc---------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...         +..||||++..... .....|.+|+.++ .++ +|||||+++
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~hpnIv~~~  153 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM-KMIGKHKNIINLL  153 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHH-HHSCCCTTBCCEE
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHH-HHhcCCCCEeeEE
Confidence            34555678999999999999863         35799999965432 2346799999999 999 899999875

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=97.57  E-value=3.2e-05  Score=79.32  Aligned_cols=61  Identities=25%  Similarity=0.253  Sum_probs=49.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||++......  ....|.+|+.++ .+++|||||+++
T Consensus        26 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   90 (331)
T 4aaa_A           26 KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLL-KQLRHENLVNLL   90 (331)
T ss_dssp             GEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHH-hhCCCCCEeeEE
Confidence            3555678999999999999986  789999998554322  235588999999 999999999875

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=97.57  E-value=2.8e-05  Score=79.31  Aligned_cols=62  Identities=18%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--------CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--------QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--------~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.+.....        .....|.+|+.++ .+++||||++++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   81 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEIL-KKLNHPCIIKIK   81 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHH-HhCCCCCCceEe
Confidence            34666778999999999999986  78999999965321        1234589999999 999999999874

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=97.56  E-value=2e-05  Score=81.09  Aligned_cols=60  Identities=22%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             CCCcCCccccccceeEEEEEEcCeEEEEEEccCCC--------CCChhHHHHHHHHHHcCCC---------CCCcccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHS--------LQGPSEFQQEVGAYESFIF---------HFNLVDS  589 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~--------~~~~~~F~~Ev~il~s~lr---------HpNLV~l  589 (591)
                      +|.....||+|+||.||+|...|..||||++....        ......|.+|+.++ ..++         |||||.+
T Consensus        21 ~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           21 KLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIIS-KELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHH-HHHHHGGGCSSSBCCCBCCE
T ss_pred             cchheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHH-HHHHHhhccccccCCchhhh
Confidence            45556789999999999999989999999996532        12247899999998 8775         7776654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=97.56  E-value=2e-05  Score=81.48  Aligned_cols=63  Identities=14%  Similarity=0.387  Sum_probs=51.2

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--------CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--------QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--------~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...  |..||||++.....        .....|.+|+.++ .+++|||||+++
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~Iv~~~   95 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAIL-SRVEHANIIKVL   95 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHH-TTCCCTTBCCEE
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            345777789999999999999875  79999999965422        1234688999999 999999999875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=97.56  E-value=4.9e-05  Score=76.59  Aligned_cols=61  Identities=26%  Similarity=0.376  Sum_probs=51.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++.... ......|.+|+.++ .+++||||++++
T Consensus        23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   86 (303)
T 3a7i_A           23 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVL-SQCDSPYVTKYY   86 (303)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            4666678999999999999875  7899999996543 34467899999999 999999999874

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=97.56  E-value=4.1e-05  Score=81.77  Aligned_cols=56  Identities=25%  Similarity=0.319  Sum_probs=46.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...  |..||||++....    ..+.+|+.+| .+++|||||+++
T Consensus        56 y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il-~~l~hpniv~l~  113 (420)
T 1j1b_A           56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIM-RKLDHCNIVRLR  113 (420)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHH-HTCCCTTBCCEE
T ss_pred             EEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHH-HHcCCCCcccee
Confidence            555678999999999999985  7999999986532    2245799999 999999999873

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=97.56  E-value=2.8e-05  Score=79.31  Aligned_cols=59  Identities=22%  Similarity=0.308  Sum_probs=47.9

Q ss_pred             CcCCccccccceeEEEEEEc------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||+|+||.||++.+.      |..||||++..... .....|.+|+.++ .+++|||||+++
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   99 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDIL-RTLYHEHIIKYK   99 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHH-HhCCCcchhhEE
Confidence            44568999999999999763      68899999975432 2346799999999 999999999874

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=97.55  E-value=2.9e-05  Score=77.84  Aligned_cols=58  Identities=28%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             cCCccccccceeEEEEEEc--C---eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          532 PSLKIGEGGYGSIYKGLLR--H---MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l~--g---~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...+||+|+||.||+|...  +   ..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        25 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   88 (298)
T 3pls_A           25 SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLM-RGLNHPNVLALI   88 (298)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHH-HTCCCTTBCCCC
T ss_pred             cCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            3468999999999999874  2   3799999965332 2356799999999 999999999875

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=97.55  E-value=4.3e-05  Score=77.61  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=51.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++.......   ...|.+|+.++ .+++||||++++
T Consensus        34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~hp~iv~~~  100 (309)
T 2h34_A           34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTA-GRLQEPHVVPIH  100 (309)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHH-hhcCCCCeeEEE
Confidence            55666788999999999999975  7899999996543222   36789999999 999999999874

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=97.54  E-value=3.1e-05  Score=76.99  Aligned_cols=62  Identities=21%  Similarity=0.365  Sum_probs=50.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.+...   .......|.+|+.++ .+++||||++++
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   77 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIH-CQLKHPSILELY   77 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-TTBCCTTBCCEE
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHH-HhCCCCCeEeEE
Confidence            45666778999999999999974  889999999542   123356799999999 999999999874

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=97.54  E-value=9.9e-06  Score=86.69  Aligned_cols=70  Identities=14%  Similarity=0.134  Sum_probs=55.6

Q ss_pred             HHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          520 FSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       520 ~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.++...+++|....+||+|+||.||++...  |..||||++....   ......|.+|..++ .+++|||||+++
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il-~~~~hp~Iv~l~  127 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVL-VNGDRRWITQLH  127 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHH-HHSCTTTBCCEE
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHH-HhcCCCCeeeEE
Confidence            4455556677888889999999999999986  8999999995421   12234588999999 999999999874

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=97.54  E-value=4.1e-05  Score=77.31  Aligned_cols=62  Identities=21%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...       +..||||++..... .....|.+|+.++ .+++|||||+++
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   92 (314)
T 2ivs_A           23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVL-KQVNHPHVIKLY   92 (314)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHH-hhCCCCceeeEE
Confidence            44556678999999999999862       37899999965432 2346789999999 999999999874

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=97.53  E-value=1.6e-05  Score=81.40  Aligned_cols=61  Identities=28%  Similarity=0.372  Sum_probs=47.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++..... .....|.+|+.++ .+++|||||+++
T Consensus         3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   66 (324)
T 3mtl_A            3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLL-KDLKHANIVTLH   66 (324)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHH-SCCCCTTBCCEE
T ss_pred             ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHH-HhcCCCCCCeee
Confidence            4555678999999999999986  78999999965322 2223466899999 999999999874

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=97.53  E-value=3.4e-05  Score=76.99  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=48.7

Q ss_pred             CCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...     +..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        16 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   82 (281)
T 1mp8_A           16 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTM-RQFDHPHIVKLI   82 (281)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             HeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCccceEE
Confidence            4555678999999999999874     35799999865322 2346799999999 999999999874

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=97.53  E-value=4.1e-05  Score=76.68  Aligned_cols=62  Identities=21%  Similarity=0.352  Sum_probs=51.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||++...  |..||||++...  .......|.+|+.++ .+++||||++++
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   87 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELL-KKLDHPNIMKLF   87 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHH-HhccCCCccEEE
Confidence            44666778999999999999985  789999998543  234567899999999 999999999874

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=97.53  E-value=2.2e-05  Score=78.72  Aligned_cols=63  Identities=22%  Similarity=0.301  Sum_probs=37.6

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||+|...  |..||||.+.... ......|.+|+.++ .+++||||++++
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   79 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAM-SQCHHPNIVSYY   79 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CC-CCCCCTTBCCEE
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHH-hhcCCCCEeeEE
Confidence            355667789999999999999874  7899999986532 23456789999999 999999999874

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=97.52  E-value=4.6e-05  Score=79.74  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=50.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~   90 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLM-KCVNHKNIIGLL   90 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHH-HhcCCCCccceE
Confidence            45677788999999999999875  78999999965322  2245689999999 999999999874

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=97.52  E-value=3.8e-05  Score=86.69  Aligned_cols=56  Identities=21%  Similarity=0.329  Sum_probs=46.5

Q ss_pred             CccccccceeEEEEEEc----CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR----HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.||+|+||.||+|.+.    +..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~l~  436 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM-QQLDNPYIVRMI  436 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            46999999999999773    47899999965322  2357899999999 999999999875

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=97.52  E-value=3.2e-05  Score=79.48  Aligned_cols=64  Identities=22%  Similarity=0.372  Sum_probs=50.1

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCC-CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPH-SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ..++|.....||.|+||.||+|...       +..||||++... .......|.+|+.++ .++ +|||||+++
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~hp~iv~~~  115 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMM-TQLGSHENIVNLL  115 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHH-HhhcCCCCeeeEE
Confidence            3456777789999999999999972       468999999653 233457899999999 999 999999874

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=97.52  E-value=2.1e-05  Score=78.75  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.+... ......|.+|+.++ .+++||||++++
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l-~~l~h~~i~~~~   68 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLL-ASLNHQYVVRYY   68 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHH-HhcCchHHHHHH
Confidence            45666778999999999999975  789999999532 22346789999999 999999999864

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=97.52  E-value=2.8e-05  Score=78.47  Aligned_cols=62  Identities=24%  Similarity=0.475  Sum_probs=50.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...       +..||||.+..... .....|.+|+.++ .++ +|||||+++
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~i~~~~   93 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL-SYLGNHMNIVNLL   93 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHH-hhcccCCCeeeEE
Confidence            45666778999999999999862       47899999975433 2346799999999 999 999999875

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=97.52  E-value=3.4e-05  Score=83.88  Aligned_cols=61  Identities=21%  Similarity=0.356  Sum_probs=50.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||||++...  .......|.+|+.++ .+++|||||+++
T Consensus        23 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~   87 (486)
T 3mwu_A           23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELL-KKLDHPNIMKLF   87 (486)
T ss_dssp             HEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHH-HhCCCCCcCeEE
Confidence            3556678999999999999986  789999998542  233467899999999 999999999875

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=97.52  E-value=1.9e-05  Score=78.77  Aligned_cols=62  Identities=21%  Similarity=0.358  Sum_probs=49.7

Q ss_pred             cCCCcCCccccccceeEEEEEEcC-----eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g-----~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...+     ..||||.+..... .....|.+|+.++ .+++||||++++
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   79 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIM-KNLDHPHIVKLI   79 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHH-HHHCCTTBCCEE
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            456666789999999999998752     3599999976432 2356799999999 999999999874

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=97.51  E-value=2.6e-05  Score=80.84  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=49.7

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||.|+||.||++...  |..||+|++..... .....|.+|+.++ .+++|||||+++
T Consensus        35 y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   97 (360)
T 3eqc_A           35 FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-HECNSPYIVGFY   97 (360)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGG-GGCCCTTBCCEE
T ss_pred             ceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHH-HHCCCCCEEEEe
Confidence            444568999999999999987  78999999965432 2246799999999 999999999875

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=97.51  E-value=3.5e-05  Score=87.11  Aligned_cols=62  Identities=23%  Similarity=0.166  Sum_probs=46.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHH---HHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQ---EVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~---Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||++...  |..||||++...   .......+.+   ++.++ ..++|||||+|+
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll-~~~~HP~IV~l~  258 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLV-STGDCPFIVCMS  258 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHH-SSSCCTTBCCEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHH-hhCCCCCEeEEE
Confidence            45667789999999999999986  899999999542   1222333444   46778 889999999875

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=97.51  E-value=3e-05  Score=78.37  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=55.8

Q ss_pred             cCHHHHHHhhcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccc
Q 007740          518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVD  588 (591)
Q Consensus       518 ~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~  588 (591)
                      +...+.....++|.....||.|+||.||+|...       +..||||.+..... .....|.+|+.++ .++ +|||||+
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~hp~iv~   95 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL-IHIGHHLNVVN   95 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHCCCTTBCC
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHH-HhcccCCCeee
Confidence            344455555677888889999999999999852       47899999965432 2245789999999 888 7999998


Q ss_pred             cc
Q 007740          589 SF  590 (591)
Q Consensus       589 li  590 (591)
                      ++
T Consensus        96 ~~   97 (316)
T 2xir_A           96 LL   97 (316)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=97.51  E-value=4.1e-05  Score=75.92  Aligned_cols=61  Identities=20%  Similarity=0.380  Sum_probs=50.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||.+...   .......|.+|+.++ .+++||||++++
T Consensus        12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   77 (276)
T 2h6d_A           12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNL-KLFRHPHIIKLY   77 (276)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             cEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHH-hcCCCCCEeEEE
Confidence            4555678999999999999986  889999998542   233456799999999 999999999874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.51  E-value=7.2e-05  Score=74.84  Aligned_cols=55  Identities=25%  Similarity=0.420  Sum_probs=46.1

Q ss_pred             ccccccceeEEEEEEc----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLR----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .||+|+||.||+|...    +..||||.+..... .....|.+|+.++ .+++||||++++
T Consensus        17 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~i~~~~   76 (287)
T 1u59_A           17 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIM-HQLDNPYIVRLI   76 (287)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            7999999999999863    67899999976432 2356799999999 999999999874

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=97.50  E-value=3.1e-05  Score=76.92  Aligned_cols=58  Identities=28%  Similarity=0.409  Sum_probs=49.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+|.....||+|+||.||++...  |..||||.+....    ..|.+|+.++ .+++||||++++
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l-~~l~h~~i~~~~   70 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKAL-AKLDHVNIVHYN   70 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHH-HHCCCTTBCCEE
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHH-HhCCCCCEEEEe
Confidence            34666778999999999999986  8999999996532    4688999999 999999999864

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=97.50  E-value=5.7e-05  Score=77.55  Aligned_cols=62  Identities=26%  Similarity=0.354  Sum_probs=49.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--Ce----EEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HM----QVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~----~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||+|...  |.    .||+|.+... .......|.+|+.++ .+++|||||+++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~   83 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM-ASVDNPHVCRLL   83 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHH-TTCCBTTBCCCC
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHH-HhCCCCCeeEEE
Confidence            34666678999999999999975  43    4688888543 344567899999999 999999999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=97.50  E-value=3.6e-05  Score=78.67  Aligned_cols=62  Identities=29%  Similarity=0.405  Sum_probs=47.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...       +..||||.+.... ......|.+|+.++ .+++|||||+++
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   99 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII-SKFNHQNIVRCI   99 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHH-hhCCCCCCCeEE
Confidence            45777789999999999999843       5689999996432 23356799999999 999999999874

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=97.49  E-value=4.6e-05  Score=77.70  Aligned_cols=59  Identities=17%  Similarity=0.375  Sum_probs=49.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++..   .....|.+|+.++ .+++ ||||++++
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l-~~l~~~~~i~~~~   97 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKIL-ENLRGGPNIITLA   97 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHH-HHHTTSTTBCCEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHH-HHcCCCCCEEEee
Confidence            34566678999999999999875  78999999964   2357899999999 9997 99999874

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=97.49  E-value=3.2e-05  Score=77.60  Aligned_cols=55  Identities=22%  Similarity=0.355  Sum_probs=43.8

Q ss_pred             ccccccceeEEEEEEc----CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLR----HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .||+|+||.||+|...    +..||||++......  ....|.+|+.++ .+++||||++++
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   84 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM-QQLDNPYIVRMI   84 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            7999999999999663    578999999654322  256799999999 999999999875

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=97.49  E-value=3.5e-05  Score=79.19  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=51.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++...   .......+.+|+.++ ..++|||||+++
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~Iv~~~   72 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML-SIVTHPFIIRMW   72 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HSCCBTTBCCEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-hhCCCCCCceEe
Confidence            45666778999999999999986  789999999542   223456788999999 999999999874

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=97.49  E-value=5.4e-05  Score=75.01  Aligned_cols=62  Identities=29%  Similarity=0.330  Sum_probs=50.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.+....  ......+.+|+.++ .++ +|||||+++
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~-~~l~~h~~iv~~~   77 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAH-AVLGQHSHVVRYF   77 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHH-HHSCSCTTBCCEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHH-HHhCCCCCeeeee
Confidence            45666778999999999999986  8999999996532  22356789999999 888 999999875

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=97.48  E-value=4.3e-05  Score=75.65  Aligned_cols=62  Identities=24%  Similarity=0.476  Sum_probs=50.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++.... ......|.+|+.++ .+++||||++++
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   71 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN-KMLNHENVVKFY   71 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHH-HhcCCCCceeee
Confidence            34566678999999999999986  7899999996432 23357799999999 999999999874

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=97.48  E-value=3.4e-05  Score=78.97  Aligned_cols=61  Identities=20%  Similarity=0.266  Sum_probs=47.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--Ce----EEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HM----QVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~----~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |.    .||+|.+... .......|.+|+.++ .+++|||||+++
T Consensus        14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   81 (325)
T 3kex_A           14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAI-GSLDHAHIVRLL   81 (325)
T ss_dssp             TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHH-HTCCCTTBCCEE
T ss_pred             HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHH-hcCCCCCcCeEE
Confidence            3445568999999999999975  43    4889988543 234456788999999 999999999875

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=97.48  E-value=3.7e-05  Score=80.74  Aligned_cols=61  Identities=15%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             CCCcCCccccc--cceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEG--GYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G--~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||+|  +||.||++...  |..||||++.....  .....|.+|+.++ .+++|||||+++
T Consensus        26 ~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~   92 (389)
T 3gni_B           26 CYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVS-KLFNHPNIVPYR   92 (389)
T ss_dssp             GEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHH-HhCCCCCCCcEe
Confidence            34455689999  99999999986  88999999965322  2246688999999 999999999874

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=97.47  E-value=4.4e-05  Score=76.22  Aligned_cols=62  Identities=21%  Similarity=0.421  Sum_probs=50.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  +..||||++...   .......|.+|+.++ .+++||||++++
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   80 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQ-SHLRHPNILRMY   80 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHH-hcCCCCCEeeEE
Confidence            34556678999999999999986  689999998542   223356799999999 999999999864

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=97.47  E-value=8e-05  Score=76.45  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             CCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ...||+|+||.||++...  |..||||++...   ....+.+|+.++ .++. |||||+++
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l-~~l~~h~niv~~~   72 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITAL-KLCEGHPNIVKLH   72 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHH-HHTTTCTTBCCEE
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHH-HHhcCCCCeeEEE
Confidence            468999999999999986  789999999542   346788999999 8887 99999874

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=97.47  E-value=4.4e-05  Score=83.24  Aligned_cols=61  Identities=20%  Similarity=0.375  Sum_probs=50.0

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++...   .......|.+|+.++ ..++|||||+++
T Consensus        17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l-~~l~HpnIv~l~   82 (476)
T 2y94_A           17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNL-KLFRHPHIIKLY   82 (476)
T ss_dssp             TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            4555668999999999999986  899999999542   223356799999999 999999999875

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=97.46  E-value=7.4e-05  Score=76.45  Aligned_cols=62  Identities=21%  Similarity=0.399  Sum_probs=51.7

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcC--CCCCCccccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESF--IFHFNLVDSF  590 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~--lrHpNLV~li  590 (591)
                      ...++|.....||+|+||.||+|...|..||||++...   ....|.+|+.++ ..  ++||||++++
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~---~~~~~~~e~~~~-~~~~l~h~ni~~~~  102 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR---EERSWFREAEIY-QTVMLRHENILGFI  102 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGG---GHHHHHHHHHHH-HHSCCCCTTBCCEE
T ss_pred             cccccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCch---hHHHHHHHHHHH-HHhhcCCCcEEEEE
Confidence            34566888889999999999999999999999999542   346788898888 65  8999999875

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=97.46  E-value=4.4e-05  Score=79.55  Aligned_cols=61  Identities=20%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||++...   .......+.+|+.++ .+++|||||+++
T Consensus        42 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~  107 (350)
T 1rdq_E           42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRIL-QAVNFPFLVKLE  107 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             HCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            4556678999999999999986  789999998542   233457799999999 999999999874

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=97.45  E-value=3.5e-05  Score=83.15  Aligned_cols=62  Identities=13%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||+|++.....  .....|.+|+.++ .+++|||||+++
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~l~   76 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARIC-RLLKHPNIVRLH   76 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHH-HHCCBTTBCCEE
T ss_pred             CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHH-HhCCCcCCCeEE
Confidence            45666778999999999999875  89999999965432  2245689999999 999999999875

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=97.45  E-value=2.3e-05  Score=84.29  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=42.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||++...  |..||||++...   .......|.+|+.++ .+++|||||+++
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~l~  214 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVL-QNSRHPFLTALK  214 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CC-CCCSCTTSCCEE
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHH-HhCCCCeEeeEE
Confidence            44666779999999999999876  789999999642   333456788999999 999999999874

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=97.44  E-value=6.3e-05  Score=76.18  Aligned_cols=62  Identities=24%  Similarity=0.375  Sum_probs=46.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...     +..||||.+.....  .....|.+|+.++ .+++||||++++
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~  102 (313)
T 3brb_A           34 NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM-KDFSHPNVIRLL  102 (313)
T ss_dssp             GGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHH-HTCCCTTBCCCC
T ss_pred             HHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHH-hcCCCCCeeeee
Confidence            44555678999999999999874     24799999965432  2246799999999 999999999875

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=97.44  E-value=6e-05  Score=75.62  Aligned_cols=61  Identities=15%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||++...  |..||+|.+.....   .....|.+|+.++ .+++|||||+++
T Consensus        16 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   81 (294)
T 2rku_A           16 RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH-RSLAHQHVVGFH   81 (294)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             ceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHH-HhCCCCCEeeee
Confidence            3555678999999999999987  68999999855322   2246689999999 999999999874

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=97.44  E-value=5.3e-05  Score=79.59  Aligned_cols=63  Identities=22%  Similarity=0.342  Sum_probs=43.2

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      .++|.....||.|+||.||+|...  |..||||++....  ......+.+|+.++ .++. |||||+++
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l-~~l~~h~niv~l~   75 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMIL-TELSGHENIVNLL   75 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHH-HHTTTCTTBCCEE
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHH-HhccCCCCCCeee
Confidence            456777789999999999999876  7899999985432  22345688999999 8897 99999875

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=97.44  E-value=4.8e-05  Score=77.91  Aligned_cols=60  Identities=25%  Similarity=0.282  Sum_probs=48.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++.....  ...|.+|+.++ .++ +||||++++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l-~~l~~h~~i~~~~   71 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFY-KQLGSGDGIPQVY   71 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHH-HHHCSCTTSCCEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHH-HHhhCCCCCCEEE
Confidence            45666788999999999999964  89999999865432  34689999999 999 999999874

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=97.43  E-value=4.1e-05  Score=80.54  Aligned_cols=57  Identities=26%  Similarity=0.332  Sum_probs=46.6

Q ss_pred             CCccccccceeEEEEEEc---C--eEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          533 SLKIGEGGYGSIYKGLLR---H--MQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~---g--~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ...||+|+||.||+|.+.   +  ..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~~~  156 (373)
T 3c1x_A           94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIM-KDFSHPNVLSLL  156 (373)
T ss_dssp             EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTS-TTCCCTTBCCCC
T ss_pred             CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHH-HhCCCCCcceEE
Confidence            457999999999999874   2  4689999965332 3357799999999 999999999875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=97.43  E-value=6.1e-05  Score=75.60  Aligned_cols=60  Identities=25%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             CCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...     +..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~   92 (298)
T 3f66_A           27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIM-KDFSHPNVLSLL   92 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHH-HTCCCTTBCCCC
T ss_pred             hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHH-HhCCCCCEeeee
Confidence            344568999999999999874     13689999965332 2346799999999 999999999875

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=97.41  E-value=2.2e-05  Score=81.30  Aligned_cols=75  Identities=17%  Similarity=0.130  Sum_probs=60.1

Q ss_pred             cccccCHHHHHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-----CCCc
Q 007740          514 FFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-----HFNL  586 (591)
Q Consensus       514 ~~~~~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-----HpNL  586 (591)
                      ....|++.+.....++|....+||+|+||.||+|...  |..||||++... ......+..|+.++ ..++     ||||
T Consensus        21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l-~~l~~~~~~h~~i   98 (360)
T 3llt_A           21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADIL-KKIQNDDINNNNI   98 (360)
T ss_dssp             GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHH-HHTCCCSTTGGGB
T ss_pred             cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHH-HHhcccCCCCCCe
Confidence            3556777777777788988899999999999999985  789999999642 12245678899999 8886     9999


Q ss_pred             cccc
Q 007740          587 VDSF  590 (591)
Q Consensus       587 V~li  590 (591)
                      |+++
T Consensus        99 v~~~  102 (360)
T 3llt_A           99 VKYH  102 (360)
T ss_dssp             CCEE
T ss_pred             eccc
Confidence            9874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=97.40  E-value=7e-05  Score=77.82  Aligned_cols=62  Identities=23%  Similarity=0.237  Sum_probs=49.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++......   ....+.+|..++ .++ +|||||+++
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l-~~~~~hp~iv~l~   76 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVF-EQASNHPFLVGLH   76 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHH-HHTTTCTTBCCEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHH-HhcCCCCccCeEE
Confidence            34666678999999999999986  789999999653322   235578999999 777 899999875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=97.40  E-value=5.3e-05  Score=79.58  Aligned_cols=62  Identities=23%  Similarity=0.359  Sum_probs=49.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc---------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...         +..||||++..... .....|.+|+.++ .++ +|||||+++
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~hpnIv~~~  141 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM-KMIGKHKNIINLL  141 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHH-HHhcCCchhhhhe
Confidence            45666678999999999999863         26799999965432 2346799999999 988 999999875

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=97.40  E-value=4.6e-05  Score=76.42  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---------ChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---------GPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---------~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.+......         ....|.+|+.++ .+++ ||||++++
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~h~~i~~~~   90 (298)
T 1phk_A           17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL-RKVSGHPNIIQLK   90 (298)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHH-HHHTTCTTBCCEE
T ss_pred             hccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHH-HHhcCCCCEeeee
Confidence            45666778999999999999986  789999999654311         135688999999 9896 99999874

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=97.39  E-value=6.8e-05  Score=75.85  Aligned_cols=63  Identities=29%  Similarity=0.361  Sum_probs=47.7

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-----CCChhHHHHHHHHHHcCCC---CCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-----LQGPSEFQQEVGAYESFIF---HFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-----~~~~~~F~~Ev~il~s~lr---HpNLV~li  590 (591)
                      +++|.....||.|+||.||+|...  |..||||++....     ......+.+|+.++ .++.   |||||+++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~h~niv~~~   80 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALL-RRLEAFEHPNVVRLM   80 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHH-HHHHHHCCTTBCCEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHH-HHHhhcCCCCeEEee
Confidence            567777889999999999999964  7899999985321     11235678888877 7665   99999874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=97.38  E-value=0.00012  Score=74.64  Aligned_cols=62  Identities=16%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHH-HHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVG-AYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~-il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||++..... .....+..|+. ++ ..++|||||+++
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~-~~~~h~niv~~~   87 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVM-RSSDCPYIVQFY   87 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHH-SSCCCTTBCCEE
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHH-HcCCCCcEeeee
Confidence            45666778999999999999986  89999999965432 22345666766 67 889999999874

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=97.38  E-value=5.9e-05  Score=77.87  Aligned_cols=61  Identities=16%  Similarity=0.276  Sum_probs=49.2

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCC--CCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFH--FNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrH--pNLV~li  590 (591)
                      .|.....||+|+||.||++... +..||||++.....  .....|.+|+.++ .+++|  ||||+++
T Consensus        10 ~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~~~iv~~~   75 (343)
T 3dbq_A           10 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL-NKLQQHSDKIIRLY   75 (343)
T ss_dssp             EEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHTTTCTTBCCEE
T ss_pred             EEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHH-HhhhhcCCceEEEe
Confidence            3555678999999999999886 78999999965332  2246799999999 99977  9999875

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=97.37  E-value=8e-05  Score=76.57  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=50.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..|.....||+|+||.||++...  +..||+|++.....   .....|.+|+.++ .+++|||||+++
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~iv~~~  107 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH-RSLAHQHVVGFH  107 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            44666778999999999999986  68999999864322   2346789999999 999999999874

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=97.37  E-value=0.00011  Score=74.91  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=46.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeE--EEEEEccCC-CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQ--VAIKMLHPH-SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~--VAVK~L~~~-~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..  ||||.+... .......|.+|+.++ .++ +||||++++
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l-~~l~~hp~iv~~~   92 (327)
T 1fvr_A           26 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVL-CKLGHHPNIINLL   92 (327)
T ss_dssp             GCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHH-TTCCCCTTBCCEE
T ss_pred             HccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHH-HhccCCCchhhhc
Confidence            4566678999999999999875  554  599998643 333456799999999 999 999999874

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=97.36  E-value=6.4e-05  Score=79.92  Aligned_cols=62  Identities=21%  Similarity=0.222  Sum_probs=48.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|....+||+|+||.||++...  |..||||++...   .......+..|..++ .++ +|||||+++
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il-~~~~~hp~Iv~l~  119 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVF-EQASNHPFLVGLH  119 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHH-HHHTTCTTBCCEE
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHH-HhcCCCCCcCeeE
Confidence            45666789999999999999987  789999999643   223345688999998 765 899999875

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=97.35  E-value=4.7e-05  Score=75.94  Aligned_cols=61  Identities=28%  Similarity=0.483  Sum_probs=41.8

Q ss_pred             CCCcCCccccccceeEEEEEEc---C--eEEEEEEccCCC---CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR---H--MQVAIKMLHPHS---LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~---g--~~VAVK~L~~~~---~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.+.   +  ..||||++....   ......|.+|+.++ .+++||||++++
T Consensus        19 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~   87 (291)
T 1u46_A           19 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAM-HSLDHRNLIRLY   87 (291)
T ss_dssp             GEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHH-HhCCCCCcccEE
Confidence            4556678999999999999874   2  369999996542   22356799999999 999999999874

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=97.35  E-value=0.00011  Score=76.88  Aligned_cols=67  Identities=15%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             HHHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC--------hhHHHHHHHHHHcCC-CCCCccccc
Q 007740          523 IEGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG--------PSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       523 l~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~--------~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .....++|.....||.|+||.||++...  |..||||++.......        ...|.+|+.++ .++ .||||++++
T Consensus        89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~hp~iv~~~  166 (365)
T 2y7j_A           89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHIL-RQVAGHPHIITLI  166 (365)
T ss_dssp             HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHH-HHHTTCTTBCCEE
T ss_pred             hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHH-HHhcCCCCEeEEE
Confidence            3444566777889999999999999986  8999999996643211        34578999999 888 799999874

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=97.34  E-value=6.1e-05  Score=84.02  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||++...  |..||||++...   .......|.+|+.+| .+++|||||+++
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL-~~l~hp~Iv~l~  250 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQIL-EKVNSRFVVSLA  250 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHH-HHcCCCCEeeEE
Confidence            45666789999999999999986  889999999542   233456789999999 999999999874

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=97.34  E-value=7.4e-05  Score=76.33  Aligned_cols=64  Identities=22%  Similarity=0.380  Sum_probs=51.4

Q ss_pred             hhcCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ..++|.....||.|+||.||+|...+       ..||||.+..... .....|.+|+.++ .++ +|||||+++
T Consensus        44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~iv~~~  116 (333)
T 2i1m_A           44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIM-SHLGQHENIVNLL  116 (333)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHH-HhhcCCCCeeeEE
Confidence            34567777899999999999999752       4799999965432 2346799999999 999 899999875

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=97.34  E-value=0.00012  Score=74.74  Aligned_cols=59  Identities=29%  Similarity=0.425  Sum_probs=45.7

Q ss_pred             cCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHH--HHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGA--YESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~i--l~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...|..||||++...   ....|..|.++  + ..++||||++++
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~-~~~~h~~i~~~~   73 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFA---NRQNFINEKNIYRV-PLMEHDNIARFI   73 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGG---GHHHHHHHHHHHTS-TTCCCTTBCCEE
T ss_pred             HHhheeeecccCCCeEEEEEEECCeEEEEEEeecc---chhhHHHHHHHHHH-HhccCcchhhhe
Confidence            34555678999999999999999999999999542   23456655555  4 468999999875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.33  E-value=6.7e-05  Score=85.24  Aligned_cols=62  Identities=24%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc---CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~---g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...   |..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~  145 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFL-AEVVHPSIVQIF  145 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGG-GGCCCTTBCCEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHH-HhcCCCCcCeEe
Confidence            45666778999999999999874   78999999965322 2345789999999 999999999875

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=97.32  E-value=5.7e-05  Score=78.63  Aligned_cols=64  Identities=20%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ..++|.....||+|+||.||++...  |..||||++...   .......+..|..++ ..+ +|||||+++
T Consensus        15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il-~~~~~hp~iv~l~   84 (345)
T 1xjd_A           15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVL-SLAWEHPFLTHMF   84 (345)
T ss_dssp             -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HHHTTCTTBCCEE
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHH-HhcCCCCCCCcEE
Confidence            4466777789999999999999986  789999999642   123456788999999 765 999999875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=97.32  E-value=6.5e-05  Score=77.08  Aligned_cols=62  Identities=23%  Similarity=0.390  Sum_probs=49.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc---------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR---------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~---------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...         +..||||++..... .....|.+|+.++ .++ +||||++++
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~hp~iv~~~  107 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM-KMIGKHKNIINLL  107 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHH-HHhhcCCCEeeEE
Confidence            44566678999999999999863         46799999965432 2346789999999 888 999999875

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=97.31  E-value=0.00011  Score=74.82  Aligned_cols=62  Identities=23%  Similarity=0.410  Sum_probs=48.5

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcC--CCCCCccccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESF--IFHFNLVDSF  590 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~--lrHpNLV~li  590 (591)
                      ...++|.....||+|+||.||+|...|..||||++...   ....+..|.+++ ..  ++|||||+++
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~-~~~~~~h~~i~~~~   97 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTT---EEASWFRETEIY-QTVLMRHENILGFI   97 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGG---GHHHHHHHHHHH-TSTTCCCTTBCCEE
T ss_pred             ccccceEEEeEeecCCCeEEEEEEECCceEEEEEEecc---ccchhhhHHHHH-HHHhhcCCCeeeEE
Confidence            33456888889999999999999999999999998542   234566666666 54  4999999875

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=97.31  E-value=6.8e-05  Score=83.07  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=51.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||++...  |..||||++...   .......|.+|+.++ .+++|||||+++
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL-~~l~hp~Iv~l~  251 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKIL-AKVHSRFIVSLA  251 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHH-HhcCCCCEeeEE
Confidence            34666678999999999999986  799999999542   223456789999999 999999999874

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=97.31  E-value=7.5e-05  Score=78.89  Aligned_cols=61  Identities=16%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCC--CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIF--HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lr--HpNLV~li  590 (591)
                      .|.....||+|+||.||++... |..||||++.....  .....|.+|+.++ .+++  |||||+++
T Consensus        57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l-~~l~~~~~~iv~~~  122 (390)
T 2zmd_A           57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL-NKLQQHSDKIIRLY  122 (390)
T ss_dssp             EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHTTTCTTBCCEE
T ss_pred             ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHH-HHcccCCCeEEEEE
Confidence            3666778999999999999876 88999999965332  2346799999999 9886  59999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=97.30  E-value=6.8e-05  Score=75.93  Aligned_cols=62  Identities=27%  Similarity=0.415  Sum_probs=50.2

Q ss_pred             hcCCCcCCccccccceeEEEEEEcCeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||.|+||.||+|...+ .||||++...  .......|.+|+.++ .+++||||++++
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~   95 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNEDQLKAFKREVMAY-RQTRHENVVLFM   95 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESS-SEEEEECCCCSCCCCCCCCCCTTGGGG-TTCCCTTBCCCC
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcC-eEEEEEeecCCCCHHHHHHHHHHHHHH-hcCCCCCEeEEE
Confidence            4556677899999999999998876 5999999653  223346688999999 999999999875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=97.30  E-value=6.3e-05  Score=78.51  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=50.5

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .++|....+||+|+||.||++...  |..||||++...   .......+.+|..++ ..+ .|||||+++
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il-~~~~~hp~Iv~l~   90 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRIL-SLARNHPFLTQLF   90 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHH-HHTTTCTTBCCEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHH-HhccCCCceeeEE
Confidence            356777789999999999999986  789999999542   223456688999999 877 799999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=97.27  E-value=5.8e-05  Score=76.41  Aligned_cols=65  Identities=20%  Similarity=0.340  Sum_probs=47.4

Q ss_pred             HhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC------ChhHHHHHHHHHHcCC----CCCCccccc
Q 007740          525 GATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ------GPSEFQQEVGAYESFI----FHFNLVDSF  590 (591)
Q Consensus       525 ~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~------~~~~F~~Ev~il~s~l----rHpNLV~li  590 (591)
                      ...++|.....||+|+||.||+|...  |..||||++......      ....|.+|+.++ .++    +||||++++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALL-WKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHH-HHHHSSCCCSSBCCEE
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHH-HhhcccCCCCCeeeEE
Confidence            34466888889999999999999875  789999999654321      223466788888 877    899999874

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=97.26  E-value=0.00014  Score=72.36  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=44.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-ChhH-HHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-GPSE-FQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-~~~~-F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++...... .... +..+...+ ..++||||++++
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~iv~~~   72 (290)
T 3fme_A            7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISM-RTVDCPFTVTFY   72 (290)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHH-HhCCCCeEEEEe
Confidence            45666778999999999999984  899999999654221 1223 44455557 889999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=97.20  E-value=0.00013  Score=76.25  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++...   .......+..|..++ ..+ +||||++++
T Consensus        20 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l-~~~~~hp~iv~l~   87 (353)
T 2i0e_A           20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVL-ALPGKPPFLTQLH   87 (353)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHH-TCTTCCTTBCCEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHH-HhcCCCCEEeeEE
Confidence            56777789999999999999987  678999999642   223456788999999 877 899999874

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=97.19  E-value=0.00015  Score=73.55  Aligned_cols=64  Identities=28%  Similarity=0.380  Sum_probs=48.7

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc---CeEEEEEEccCCC--CCChhHHHHHHHHHHcCC---CCCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFI---FHFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~---g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~l---rHpNLV~li  590 (591)
                      +.++|.....||+|+||.||++...   |..||||++....  ......+.+|+.++ ..+   .||||++++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~h~~i~~~~   80 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL-RHLETFEHPNVVRLF   80 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHH-HHHHHTCCTTBCCEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHH-HhhhccCCCCeEeee
Confidence            4456777789999999999999873   7899999985422  22234677888777 655   899999874

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=97.18  E-value=0.00021  Score=75.55  Aligned_cols=57  Identities=25%  Similarity=0.335  Sum_probs=45.5

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|....+||+|+||.||++... +..||||++.....    .+.+|+.++ ..++|||||+++
T Consensus        41 ~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il-~~l~h~niv~l~   98 (394)
T 4e7w_A           41 AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIM-RIVKHPNVVDLK   98 (394)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHH-HTCCCTTBCCEE
T ss_pred             eEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHH-HhCCCCCcceEE
Confidence            3555678999999999999986 56799998854322    234799999 999999999874

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=97.16  E-value=7.6e-05  Score=80.16  Aligned_cols=59  Identities=29%  Similarity=0.434  Sum_probs=47.2

Q ss_pred             cCCCcCCcccccccee-EEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGS-IYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~-Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .+|....+||.|+||. ||++...|+.||||++....   ...+.+|+.+| ..+ +|||||+++
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~---~~~~~~E~~~l-~~l~~HpnIv~l~   84 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC---FSFADREVQLL-RESDEHPNVIRYF   84 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT---EEECHHHHHHH-HHSCCCTTBCCEE
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH---HHHHHHHHHHH-HhccCCCCcCeEE
Confidence            3466778999999998 56666679999999996532   23467899999 888 899999875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=97.15  E-value=6.8e-05  Score=84.96  Aligned_cols=62  Identities=21%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++.... ......|.+|+.++ .+++|||||+++
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL-~~L~HpnIV~l~   78 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIM-KKLNHPNVVSAR   78 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHH-HHCCBTTBCCEE
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHH-HhCCCCCCCcee
Confidence            56777889999999999999875  7899999986532 22356799999999 999999999864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=97.13  E-value=0.00013  Score=75.67  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++.....    .+.+|+.++ .++ +|||||+++
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l-~~~~~hp~iv~~~   82 (342)
T 2qr7_A           22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEIL-LRYGQHPNIITLK   82 (342)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHH-HHHTTSTTBCCEE
T ss_pred             ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHH-HHhcCCCCcCeEE
Confidence            44666678999999999999986  78999999965432    346788888 776 799999874

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=97.10  E-value=0.00017  Score=75.16  Aligned_cols=61  Identities=5%  Similarity=-0.093  Sum_probs=38.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC---ChhHHHHH---HHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ---GPSEFQQE---VGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~---~~~~F~~E---v~il~s~lrHpNLV~li  590 (591)
                      .+|.....||+|+||.||+|...  |..||||++......   ....|.+|   +.+| .. +|||||+++
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l-~~-~hp~iv~~~  130 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARL-LG-ESPEEARDR  130 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHH-HC----------
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHh-cc-cChhhhhhc
Confidence            34566778999999999999975  799999999764332   24557777   4566 55 799987643

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=97.09  E-value=0.00021  Score=80.93  Aligned_cols=62  Identities=26%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...     +..||||.+..... .....|.+|+.++ .+++|||||+++
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~HpnIv~l~  457 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTM-RQFDHPHIVKLI  457 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            45666778999999999999884     36799999865332 2246799999999 999999999875

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=97.08  E-value=0.00023  Score=71.84  Aligned_cols=62  Identities=15%  Similarity=0.157  Sum_probs=40.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC-Ch-hHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-GP-SEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-~~-~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||.|+||.||+|...  |..||||++...... .. ..+..+..++ ..++||||++++
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~i~~~~   90 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVL-KSHDCPYIVQCF   90 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHH-HTTTCTTBCCEE
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHH-HhcCCCceeeEE
Confidence            45666678999999999999986  789999999654321 12 2344445567 889999999874

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=97.08  E-value=6.5e-05  Score=77.73  Aligned_cols=56  Identities=9%  Similarity=0.071  Sum_probs=45.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc----------CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR----------HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~----------g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      ++|.....||.|+||.||+|...          +..||||.+...     ..|.+|+.++ .+++|||||++
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l-~~l~h~niv~~  107 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFF-QRAAKPLQVNK  107 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHH-HHHCCHHHHHH
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHH-HHhcccchhhh
Confidence            34566678999999999999874          578999999643     4689999999 99999999874

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=97.07  E-value=0.00015  Score=76.23  Aligned_cols=62  Identities=19%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC---CCChhHHHHHHHH-HHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS---LQGPSEFQQEVGA-YESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~---~~~~~~F~~Ev~i-l~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++....   ......+..|..+ + ..++|||||+++
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll-~~~~hp~Iv~l~  105 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLL-KNVKHPFLVGLH  105 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCB-CCCCCTTBCCEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHH-HhCCCCCCCCEE
Confidence            45777789999999999999986  6899999996532   2234456777776 5 679999999874

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=97.06  E-value=5.5e-05  Score=76.69  Aligned_cols=72  Identities=15%  Similarity=0.255  Sum_probs=53.8

Q ss_pred             cCHHHHHHhhcCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCC--CCCccccc
Q 007740          518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIF--HFNLVDSF  590 (591)
Q Consensus       518 ~s~~el~~aT~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lr--HpNLV~li  590 (591)
                      +.+..+....++|.....||+|+||.||++... |..||||.+.....  .....|.+|+.++ .+++  ||||++++
T Consensus        18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~~~iv~~~   94 (313)
T 3cek_A           18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL-NKLQQHSDKIIRLY   94 (313)
T ss_dssp             --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHH-HHHGGGCTTBCCEE
T ss_pred             CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHH-HhccccCCceEEEE
Confidence            333334444456777789999999999999887 78999999965322  2346789999999 9887  59999875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=97.04  E-value=0.00026  Score=73.64  Aligned_cols=63  Identities=17%  Similarity=0.240  Sum_probs=45.5

Q ss_pred             hcCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCC-----------ChhHHHHHHHHHHcCCCCCCccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQ-----------GPSEFQQEVGAYESFIFHFNLVD  588 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~-----------~~~~F~~Ev~il~s~lrHpNLV~  588 (591)
                      +++|.....||+|+||.||+|...       +..||||++......           ....+..|+..+ ..++|||||+
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~-~~l~h~~iv~  112 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRT-RKLKYLGVPK  112 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHH-TTCSCCCSCC
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHH-hhccCCCCCe
Confidence            446777789999999999999885       368999998654311           112345566677 8899999998


Q ss_pred             cc
Q 007740          589 SF  590 (591)
Q Consensus       589 li  590 (591)
                      ++
T Consensus       113 ~~  114 (364)
T 3op5_A          113 YW  114 (364)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=97.03  E-value=8.7e-05  Score=77.17  Aligned_cols=62  Identities=21%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             cCCCcCCccccccceeEEEEEE-----cCeEEEEEEccCCC----CCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLL-----RHMQVAIKMLHPHS----LQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l-----~g~~VAVK~L~~~~----~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||++..     .|..||||++....    ......|.+|+.++ .++ .||||++++
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~h~~iv~~~  125 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVL-EHIRQSPFLVTLH  125 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHH-HHHHTCTTBCCEE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHH-HHccCCCceeEEE
Confidence            4677778899999999999987     37899999986421    23345688899999 888 699999874

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=97.00  E-value=0.00036  Score=69.74  Aligned_cols=60  Identities=25%  Similarity=0.459  Sum_probs=48.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||++....  ....|.+|+.++ .++ +|||++.++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~-~~l~~~~~i~~~~   72 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTY-KLLAGCTGIPNVY   72 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHH-HHTTTCTTCCCEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHH-HHHhcCCCCCeEE
Confidence            34666678999999999999964  8999999986433  234688999999 888 899998764

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=96.99  E-value=0.00028  Score=72.74  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCCC-----------ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSLQ-----------GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~~-----------~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...     +..||||++......           ....|.+|+.++ ..++||||++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~-~~l~h~ni~~~~  114 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIER-KQLDYLGIPLFY  114 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHH-HTCSCCCCCCEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhh-ccccccCcceee
Confidence            34666678999999999999984     578999998654321           224477888999 999999999874

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=96.99  E-value=0.00043  Score=70.79  Aligned_cols=56  Identities=13%  Similarity=0.243  Sum_probs=46.3

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ..||+|+||.||+|...  |..||||++...  .......|.+|+.++ .++ +||||++++
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~~iv~~~   95 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVL-ELAKSCPRVINLH   95 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHH-HHTTTCTTBCCEE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHH-HhccCCCCEEEEE
Confidence            67999999999999986  799999999653  223457899999999 877 569999875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=96.98  E-value=0.00037  Score=69.53  Aligned_cols=61  Identities=23%  Similarity=0.303  Sum_probs=49.7

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...  |..||||++.....  ...|.+|+.++ .+++|+|++..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l-~~l~~~~~i~~~   70 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIY-KMMQGGVGIPTI   70 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHH-HHHTTSTTCCCE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHH-HHhhcCCCCCcc
Confidence            356777789999999999999964  89999999865432  34799999999 999999877543

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=96.98  E-value=0.00026  Score=73.59  Aligned_cols=61  Identities=15%  Similarity=0.287  Sum_probs=47.8

Q ss_pred             hhcCCCcCCccccccceeEEEEE------E-cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCC---CCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGL------L-RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF---HFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~------l-~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr---HpNLV~li  590 (591)
                      ..+.|.....||+|+||.||+|.      . .+..||||++...   ....|..|+.++ .+++   |+||+.++
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~-~~l~~~~~~~iv~~~  133 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLM-ERLKPSMQHMFMKFY  133 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHH-HHSCGGGGGGBCCEE
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHH-HHhhhhhhhhhhhhh
Confidence            34556667789999999999994      2 2789999999653   356788888888 7777   89998764

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=96.96  E-value=0.00016  Score=75.42  Aligned_cols=61  Identities=13%  Similarity=0.128  Sum_probs=48.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC--------CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF--------HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr--------HpNLV~li  590 (591)
                      ++|....+||+|+||.||++...  |..||||++... ......|.+|+.++ .+++        |||||+++
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l-~~l~~~~~~~~~~~~iv~~~  107 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLL-KSVRNSDPNDPNREMVVQLL  107 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHH-HHHHHSCTTCGGGGGBCCEE
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHH-HHHhhcCCCCCCcceeeeee
Confidence            45666788999999999999875  789999999643 12246788999999 8886        77898764

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=96.95  E-value=0.00063  Score=75.22  Aligned_cols=58  Identities=19%  Similarity=0.229  Sum_probs=39.5

Q ss_pred             CcCCccccccceeEEEEEEcCeEEEEEEccCCCCCC--------hhHHHHHHHHHHcCCCCCCcccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQG--------PSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~--------~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .+.+.||+|+||.||+|.+.+..+++|++.......        ...|.+|+.++ .+++|||||.+
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il-~~l~h~nIv~~  404 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYL-ALVKDFGIPAP  404 (540)
T ss_dssp             ---------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHH-HHGGGGTCCCC
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHH-HhcCCCCcCce
Confidence            446789999999999998889999999875532221        24489999999 99999999943

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=96.95  E-value=0.00021  Score=76.58  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             CCccccccceeEE-EEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          533 SLKIGEGGYGSIY-KGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       533 ~~~iG~G~~G~Vy-kg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ..+||+|+||+|| .+...|..||||++...   ....+.+|+.++ .++ +|||||+++
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l-~~l~~HpnIv~~~   75 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLL-TESDDHPNVIRYY   75 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHH-HHHTTSTTBCCEE
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHH-HhccCCCCcCeEE
Confidence            4679999999996 45556999999998542   235688999999 765 899999874

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=96.82  E-value=0.00048  Score=68.61  Aligned_cols=61  Identities=23%  Similarity=0.303  Sum_probs=46.6

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...  |..||||++.....  ...|.+|+.++ .+++|+|++..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l-~~l~~~~~i~~~   70 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIY-KMMQGGVGIPTI   70 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHH-HHHTTSTTCCCE
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHH-HHhcCCCCCCee
Confidence            456777889999999999999964  89999998754332  23589999999 999999887653

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=96.79  E-value=0.00093  Score=70.70  Aligned_cols=52  Identities=19%  Similarity=0.141  Sum_probs=42.6

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||.|+||.||++...  |..||||++..     ...+.+|+.++....+|||||+++
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~  121 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIV  121 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEe
Confidence            57999999999999986  78999999953     356889998872345899999874

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=96.76  E-value=0.00027  Score=72.13  Aligned_cols=64  Identities=20%  Similarity=0.383  Sum_probs=49.8

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC------CChhHHHHHHHHHHcCCC--CCCccccc
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL------QGPSEFQQEVGAYESFIF--HFNLVDSF  590 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~------~~~~~F~~Ev~il~s~lr--HpNLV~li  590 (591)
                      ..++|.....||+|+||.||+|...  |..||||.+.....      .....|.+|+.++ .+++  ||||++++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~~~~~i~~~~  114 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL-KKVSSGFSGVIRLL  114 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHH-HHHCSSSCSBCCEE
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHH-HhhccCCCCceEEE
Confidence            3456777789999999999999875  78999999965322      1235678899999 8886  59999874

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=96.74  E-value=0.00066  Score=77.06  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=49.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      .+|....+||+|+||.||++...  |..||||++...   .......+..|..++ ..+ +||||+.|+
T Consensus       341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l-~~~~~~~~i~~l~  408 (674)
T 3pfq_A          341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVL-ALPGKPPFLTQLH  408 (674)
T ss_dssp             TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHH-TCTTCCTTBCCEE
T ss_pred             cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHH-HhccCCCeEEEEE
Confidence            45666779999999999999986  678999999542   233456789999999 876 799999764

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=96.72  E-value=0.00057  Score=72.64  Aligned_cols=57  Identities=5%  Similarity=-0.017  Sum_probs=45.9

Q ss_pred             hhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC---CChhHHHHHHHHHHcCCCC
Q 007740          526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFH  583 (591)
Q Consensus       526 aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrH  583 (591)
                      .+.+|...++||+|+||.||+|...  |..||||++.....   .....|.+|+.++ ..++|
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~-~~l~~  137 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL-RLLRG  137 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGG-GGSTT
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHH-Hhhcc
Confidence            4455666778999999999999976  89999999974322   2367899999999 99987

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=96.71  E-value=0.0005  Score=73.55  Aligned_cols=60  Identities=20%  Similarity=0.386  Sum_probs=45.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCC------CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFI------FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~l------rHpNLV~li  590 (591)
                      .|....+||+|+||.||+|...  |..||||++.... .....+.+|+.++ ..+      .||||+.++
T Consensus        98 ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l-~~l~~~~~~~~~~iv~~~  165 (429)
T 3kvw_A           98 RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRIL-EHLRKQDKDNTMNVIHML  165 (429)
T ss_dssp             TEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHH-HHHHTTCTTSCSCBCCEE
T ss_pred             cEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHH-HHHhhccccCCcCEEEEE
Confidence            4566678999999999999886  7899999996432 1235677888877 655      677998764

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=96.70  E-value=0.00087  Score=67.40  Aligned_cols=52  Identities=19%  Similarity=0.141  Sum_probs=42.9

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ..||.|+||.||++...  |..||||++..     ...+.+|+.++...++||||++++
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~   77 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIV   77 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHH
Confidence            57999999999999885  78999999953     356888988773456999999874

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=96.68  E-value=0.00037  Score=72.10  Aligned_cols=61  Identities=11%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-----------CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-----------HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-----------HpNLV~li  590 (591)
                      .+|.....||+|+||.||+|...  |..||||++.... .....+.+|+.++ .+++           ||||++++
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l-~~l~~~~~~~~~~~~~~~i~~~~   92 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLL-QRVNDADNTKEDSMGANHILKLL   92 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHH-HHHHHTCCSHHHHHHHTTBCCCC
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHH-HHhhcccccchhccccchHHHHH
Confidence            34666678999999999999974  8999999996432 2245688999998 8776           88999875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=96.58  E-value=0.0015  Score=71.14  Aligned_cols=59  Identities=25%  Similarity=0.354  Sum_probs=47.3

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCcccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      ++|....+||+|+||.||+|...  |..||||++.....  ...|..|+.++ ..++|++.+..
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il-~~L~~~~~i~~   67 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIY-RILQGGTGIPN   67 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHH-HHTTTSTTCCC
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHH-HHhcCCCCCCe
Confidence            46777889999999999999975  89999999865433  23589999999 99988765543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=96.46  E-value=0.0017  Score=66.76  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             cCCCc-CCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHH-HHHHcCCCCCCccccc
Q 007740          528 HNFDP-SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEV-GAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~-~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev-~il~s~lrHpNLV~li  590 (591)
                      ++|.. ..+||.|+||.||+|...  |..||||++...     ....+|+ ..+ ..+.||||++++
T Consensus        28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~-~~~~h~~i~~~~   88 (336)
T 3fhr_A           28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHW-QASGGPHIVCIL   88 (336)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHH-HHTTSTTBCCEE
T ss_pred             ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHH-HhcCCCChHHHH
Confidence            34555 346999999999999987  889999999542     2333443 334 667999999874

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=96.38  E-value=0.0026  Score=64.12  Aligned_cols=60  Identities=10%  Similarity=0.061  Sum_probs=44.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCC------------------ChhHHHHHHHHHHcCCCCCCccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQ------------------GPSEFQQEVGAYESFIFHFNLVD  588 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~------------------~~~~F~~Ev~il~s~lrHpNLV~  588 (591)
                      ..|.....||.|+||.||+|... |..||||.+......                  ....|.+|+.++ .+++|+++..
T Consensus        90 ~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l-~~l~~~~v~~  168 (282)
T 1zar_A           90 KVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRAL-QKLQGLAVPK  168 (282)
T ss_dssp             SCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHH-HHTTTSSSCC
T ss_pred             eEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHH-HhccCCCcCe
Confidence            34445578999999999999986 899999999643211                  134689999999 9898555543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.23  E-value=0.17  Score=65.92  Aligned_cols=17  Identities=12%  Similarity=0.122  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007740          361 QLAQAMAEAENSRREAF  377 (591)
Q Consensus       361 ~l~~~~~e~~~~r~e~~  377 (591)
                      +|+++...++.++.+|.
T Consensus      1928 KL~et~~~V~~l~~~L~ 1944 (3245)
T 3vkg_A         1928 KLRDTEAQVKDLQVSLA 1944 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444443

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=96.14  E-value=0.0014  Score=68.66  Aligned_cols=61  Identities=25%  Similarity=0.285  Sum_probs=46.1

Q ss_pred             HHhhcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-CCCc
Q 007740          524 EGATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-HFNL  586 (591)
Q Consensus       524 ~~aT~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-HpNL  586 (591)
                      ...+++|.....||+|+||.||+|...  |..||||++.... .....+..|+.++ ..++ |+|+
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l-~~l~~~~~~  113 (382)
T 2vx3_A           50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLL-ELMNKHDTE  113 (382)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHH-HHHHHCSSG
T ss_pred             CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHH-HHHHhcccc
Confidence            344567777889999999999999886  7899999996421 2245678888888 7774 6653

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=95.96  E-value=0.0012  Score=66.94  Aligned_cols=55  Identities=15%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             CCCcCCccccccceeEEEEEE---cCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCC
Q 007740          529 NFDPSLKIGEGGYGSIYKGLL---RHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFN  585 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l---~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpN  585 (591)
                      .|.....||+|+||.||++..   .|..||||++.... .....+.+|+.++ ..++|+|
T Consensus        15 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l-~~l~~~~   72 (339)
T 1z57_A           15 RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVL-EHLNTTD   72 (339)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHH-HHHHHHC
T ss_pred             ceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHH-HHhhhcC
Confidence            455567899999999999987   27899999996432 2246688999999 8887776

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.96  E-value=1.4  Score=43.42  Aligned_cols=51  Identities=18%  Similarity=0.120  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          435 VMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQ  485 (591)
Q Consensus       435 ~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~  485 (591)
                      +..++..+..++..++.++.+....+.+++..+......+..++.....++
T Consensus        95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~  145 (256)
T 3na7_A           95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE  145 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444433333333

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=95.89  E-value=0.0036  Score=61.99  Aligned_cols=54  Identities=9%  Similarity=-0.039  Sum_probs=40.8

Q ss_pred             cCCccccccceeEEEEEE--cCeE--EEEEEccCCCCC--C----------------------hhHHHHHHHHHHcCCCC
Q 007740          532 PSLKIGEGGYGSIYKGLL--RHMQ--VAIKMLHPHSLQ--G----------------------PSEFQQEVGAYESFIFH  583 (591)
Q Consensus       532 ~~~~iG~G~~G~Vykg~l--~g~~--VAVK~L~~~~~~--~----------------------~~~F~~Ev~il~s~lrH  583 (591)
                      ....||.|+||.||+|..  .|..  ||||++......  .                      ...+.+|+.+| .+++|
T Consensus        51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~  129 (258)
T 1zth_A           51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNL-ERAKE  129 (258)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHH-HHHHH
T ss_pred             hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHH-HHHHh
Confidence            346799999999999998  4888  999987543111  0                      12688999999 98888


Q ss_pred             CCc
Q 007740          584 FNL  586 (591)
Q Consensus       584 pNL  586 (591)
                      +|+
T Consensus       130 ~~i  132 (258)
T 1zth_A          130 AGV  132 (258)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            865

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=95.48  E-value=0.0024  Score=65.18  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=44.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--C-eEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCC
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--H-MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFN  585 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g-~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpN  585 (591)
                      ++|.....||+|+||.||++...  + ..||||++.... .....+.+|+.++ .+++|+|
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l-~~l~~~~   77 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVL-KKIKEKD   77 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHH-HHHHHHC
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHH-HHHhhcC
Confidence            45666778999999999999875  4 789999996432 2246688999999 8888877

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.91  E-value=0.88  Score=54.12  Aligned_cols=26  Identities=12%  Similarity=0.027  Sum_probs=12.9

Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHH
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELIS  151 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~  151 (591)
                      +...+.||....+-..+ +  ..++++++
T Consensus       475 eeY~~EgI~w~~i~f~d-n--~~~idlie  500 (1080)
T 2dfs_A          475 EEYMKEQIPWTLIDFYD-N--QPCINLIE  500 (1080)
T ss_dssp             HHHHHHTCCTTCCCCCC-C--HHHHHHHH
T ss_pred             HHHhhcCCccccccccc-c--HHHHHHHh
Confidence            44556688765432222 2  33555554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.91  E-value=0.093  Score=63.26  Aligned_cols=12  Identities=8%  Similarity=-0.022  Sum_probs=7.7

Q ss_pred             HHHHHcCCceEE
Q 007740          123 LICRQMGVRAEK  134 (591)
Q Consensus       123 ~~c~~~gV~~e~  134 (591)
                      ..+.+.||....
T Consensus       502 ~ey~~Egi~~~~  513 (1184)
T 1i84_S          502 EEYQREGIEWNF  513 (1184)
T ss_dssp             HHHHHHTCSCCC
T ss_pred             HHHHhcCCCccc
Confidence            445667888654

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.69  E-value=0.68  Score=41.86  Aligned_cols=100  Identities=24%  Similarity=0.199  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          379 EALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQ  458 (591)
Q Consensus       379 ~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~  458 (591)
                      ...+...|++.+-+..+..+.+++.-.....+-..+|..|...+...+...+..+++..++..+...+...+.++..+..
T Consensus        22 a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~  101 (147)
T 2b9c_A           22 ALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG  101 (147)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555555555544444444445666666665555555566666667777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007740          459 TAKELEQKIISAVELLQNYK  478 (591)
Q Consensus       459 ~~~ele~~~~~~~~~l~~~~  478 (591)
                      ++.+|+..+...-..+.++.
T Consensus       102 k~~eLEeeL~~~~~nlKsLE  121 (147)
T 2b9c_A          102 KCAELEEELKTVTNNLKSLE  121 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhH
Confidence            77777777766665555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.65  E-value=0.47  Score=52.35  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          459 TAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEEL  498 (591)
Q Consensus       459 ~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~  498 (591)
                      ....++.+.......+++.++...+++++.....++..++
T Consensus       538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.22  E-value=0.079  Score=63.85  Aligned_cols=8  Identities=25%  Similarity=0.688  Sum_probs=3.9

Q ss_pred             HHHHHHhc
Q 007740           62 LLWALQNS   69 (591)
Q Consensus        62 l~wAl~~~   69 (591)
                      +.|-+..+
T Consensus       438 F~wlv~~i  445 (1184)
T 1i84_S          438 FRWILTRV  445 (1184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            34555544

>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}

Probab=94.03  E-value=1.5  Score=43.73  Aligned_cols=53  Identities=28%  Similarity=0.415  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          357 NLYDQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELK  409 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~  409 (591)
                      .+++.|.....|+++.|++.+++..+..+...++..+.+||+..=....+|-.
T Consensus        98 ~~~~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~e  150 (279)
T 3qwe_A           98 DYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLR  150 (279)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888999999999999999999988888999999999886666555544

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=93.76  E-value=4.9  Score=38.34  Aligned_cols=8  Identities=25%  Similarity=0.223  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 007740          362 LAQAMAEA  369 (591)
Q Consensus       362 l~~~~~e~  369 (591)
                      +.++..++
T Consensus        22 ~~~l~~~l   29 (284)
T 1c1g_A           22 ADEAEADK   29 (284)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.62  E-value=5.9  Score=38.87  Aligned_cols=66  Identities=15%  Similarity=0.199  Sum_probs=34.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 007740          423 LELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVEL----LQNYKKEQDELQMER  488 (591)
Q Consensus       423 ~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~----l~~~~~~~~el~~~r  488 (591)
                      .+++.++.+...+..++.+++.+...+...+.+....+.+++..+......    +.++..+...+..+|
T Consensus        97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r  166 (256)
T 3na7_A           97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKK  166 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666666666666666666665555555555444433322    333334444444444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.18  E-value=4.8  Score=36.46  Aligned_cols=75  Identities=15%  Similarity=0.110  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 007740          357 NLYDQLAQAMAEAENSRREAFE---EALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQ  431 (591)
Q Consensus       357 ~~~~~l~~~~~e~~~~r~e~~~---~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e  431 (591)
                      .+.+.|..+..+++..+....+   ....+..+..+........+.|...+.+|..+|...|....+...+++.+-..
T Consensus        17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas   94 (154)
T 2ocy_A           17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   94 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555533322111   11112222333333334444455555555555555555555444444444433

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}

Probab=92.90  E-value=0.28  Score=52.88  Aligned_cols=97  Identities=13%  Similarity=0.165  Sum_probs=67.1

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMC  121 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~  121 (591)
                      +++|+||+-|. ..|..+|.++....  .|-.|+++||.....      +                    ..+..-....
T Consensus        18 ~~~vlVa~SGG-~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr------g--------------------~~s~~~~~~v   70 (464)
T 3a2k_A           18 GAAVIVGVSGG-PDSLALLHVFLSLRDEWKLQVIAAHVDHMFR------G--------------------RESEEEMEFV   70 (464)
T ss_dssp             SSBEEEECCSS-HHHHHHHHHHHHHHHTTTCBCEEEEEECTTC------T--------------------HHHHHHHHHH
T ss_pred             CCEEEEEEcCc-HHHHHHHHHHHHHHHHcCCeEEEEEEECCCC------c--------------------cccHHHHHHH
Confidence            46899999999 88988887766544  567899999975431      0                    0111223446


Q ss_pred             HHHHHHcCCceEEEEEecC--------Ch--------HHHHHHHHHHcCCCEEEEccCCCch
Q 007740          122 LLICRQMGVRAEKLDTESE--------ST--------EKGILELISHYGIRKLVMGAAADKH  167 (591)
Q Consensus       122 ~~~c~~~gV~~e~~vie~~--------~~--------~~~Ive~a~~~~idlIVmGs~g~~~  167 (591)
                      ..+|...||++..+.+...        ++        ...+.++|.+++++.|++|.|...-
T Consensus        71 ~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~  132 (464)
T 3a2k_A           71 KRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQ  132 (464)
T ss_dssp             HHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHH
T ss_pred             HHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHH
Confidence            6789999999876655311        11        1456678889999999999997543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.43  E-value=2.1  Score=47.02  Aligned_cols=19  Identities=16%  Similarity=0.228  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 007740          462 ELEQKIISAVELLQNYKKE  480 (591)
Q Consensus       462 ele~~~~~~~~~l~~~~~~  480 (591)
                      +++.++...+..+.+++++
T Consensus       548 ~le~~~~~~~~~~~~l~~e  566 (597)
T 3oja_B          548 ALEKQLDNKRAKQAELRQE  566 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHH
Confidence            3333333333333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.28  E-value=5.5  Score=34.94  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          462 ELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELRK  500 (591)
Q Consensus       462 ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~~~  500 (591)
                      +|+.++......+.........|...+.+...+...+..
T Consensus        80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~  118 (129)
T 2fxo_A           80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR  118 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444445555555555555555443

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*

Probab=92.26  E-value=1.2  Score=45.33  Aligned_cols=95  Identities=12%  Similarity=0.140  Sum_probs=63.9

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCe-EEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKR-ICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~-I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      +++|+||+-|. ..|..++.++....  .|-. |+++||.....         +                  ....-...
T Consensus        24 ~~~vlva~SGG-~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r---------~------------------~s~~~~~~   75 (317)
T 1wy5_A           24 ERRVLIAFSGG-VDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR---------E------------------SAERDEEF   75 (317)
T ss_dssp             CCEEEEECCSS-HHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS---------T------------------HHHHHHHH
T ss_pred             CCEEEEEecch-HHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC---------c------------------ccHHHHHH
Confidence            46999999999 88988777766543  3567 99999975321         0                  01112334


Q ss_pred             HHHHHHHcCCceEEEEEec--------CChH--------HHHHHHHHHcCCCEEEEccCCCc
Q 007740          121 CLLICRQMGVRAEKLDTES--------ESTE--------KGILELISHYGIRKLVMGAAADK  166 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~--------~~~~--------~~Ive~a~~~~idlIVmGs~g~~  166 (591)
                      ...+|...||++..+.+..        .++.        ..+.+++.++|++.|+.|.|...
T Consensus        76 v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD  137 (317)
T 1wy5_A           76 CKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLND  137 (317)
T ss_dssp             HHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHH
T ss_pred             HHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhH
Confidence            5567888899987655421        1111        25667889999999999998654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=91.62  E-value=0.042  Score=58.13  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=27.7

Q ss_pred             CCcCCccccccceeEEEEEEc-CeEEEEEEccC
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHP  561 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~  561 (591)
                      +.....||.|+||.||+|... |..||||+++.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~  129 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRL  129 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence            555678999999999999876 89999999854

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.58  E-value=2.4  Score=50.37  Aligned_cols=9  Identities=11%  Similarity=0.276  Sum_probs=3.6

Q ss_pred             CEEEEeecC
Q 007740           45 DKIYVAVAK   53 (591)
Q Consensus        45 ~kIlVAVD~   53 (591)
                      +.|.+|.+.
T Consensus       385 e~i~~~~~~  393 (1080)
T 2dfs_A          385 ETYIKPISK  393 (1080)
T ss_dssp             --EEEECCH
T ss_pred             ceEEeCCCH
Confidence            455555543

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.08  E-value=6.4  Score=34.48  Aligned_cols=42  Identities=26%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          417 ALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQ  458 (591)
Q Consensus       417 ~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~  458 (591)
                      .+...|.++.++++....+..+++.++.++..|+..+++...
T Consensus        30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~   71 (129)
T 3tnu_B           30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ   71 (129)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            344457777778888888888888888887777777666543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.44  E-value=8.6  Score=32.22  Aligned_cols=30  Identities=23%  Similarity=0.374  Sum_probs=11.3

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 007740          414 FEEALANGKLELERMKKQHDEVMEELQIAL  443 (591)
Q Consensus       414 ~E~~l~~ek~~~~~~k~e~~~~~~el~~~~  443 (591)
                      .|..+......+..+..+.+.+...|....
T Consensus        42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~   71 (101)
T 3u1c_A           42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSE   71 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344443333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=89.43  E-value=4.9  Score=32.76  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007740          369 AENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELER  427 (591)
Q Consensus       369 ~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~  427 (591)
                      ++.||..+..-..-....+-+.-.+..-+..+...|.+|...|...|..+...|..+..
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~   60 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN   60 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            44555555544444555556666667777788888888888888888776665544443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.00  E-value=11  Score=32.93  Aligned_cols=12  Identities=25%  Similarity=0.484  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 007740          449 LESQIAESDQTA  460 (591)
Q Consensus       449 l~~~~~e~~~~~  460 (591)
                      |+.++.++...+
T Consensus        81 Le~~l~el~~rl   92 (129)
T 2fxo_A           81 LEAKVKEMNKRL   92 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.73  E-value=11  Score=31.49  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          443 LDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEEL  498 (591)
Q Consensus       443 ~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~  498 (591)
                      .+....++.++..++.++..++..+..+...|......+++-.+....+..++..+
T Consensus        36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L   91 (101)
T 3u1c_A           36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL   91 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555554444444444444444444

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.25  E-value=7.7  Score=34.05  Aligned_cols=41  Identities=27%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          418 LANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQ  458 (591)
Q Consensus       418 l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~  458 (591)
                      +...|.++.++++....+..+++.++.++..|+..+++...
T Consensus        33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~   73 (131)
T 3tnu_A           33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG   73 (131)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34446666677777777777777777777667666655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.64  E-value=9.4  Score=40.80  Aligned_cols=45  Identities=11%  Similarity=0.082  Sum_probs=24.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          427 RMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAV  471 (591)
Q Consensus       427 ~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele~~~~~~~  471 (591)
                      +++++.+...++.+..++++..++..+.+...++.+..+++..+.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (487)
T 3oja_A          432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV  476 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence            344444444555555555666666666666655555555554443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=86.38  E-value=13  Score=30.95  Aligned_cols=16  Identities=13%  Similarity=0.283  Sum_probs=5.9

Q ss_pred             HHHHHHhHHHHHHHHH
Q 007740          425 LERMKKQHDEVMEELQ  440 (591)
Q Consensus       425 ~~~~k~e~~~~~~el~  440 (591)
                      +..+..+.+.+...+.
T Consensus        53 iq~lE~eld~~~e~l~   68 (101)
T 3u59_A           53 LKGTEDEVEKYSESVK   68 (101)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=85.14  E-value=1.4  Score=48.87  Aligned_cols=23  Identities=9%  Similarity=0.164  Sum_probs=17.6

Q ss_pred             EEEEeecCChHHHHHHHHHHHHhc
Q 007740           46 KIYVAVAKQVKESKSVLLWALQNS   69 (591)
Q Consensus        46 kIlVAVD~S~~~S~~Al~wAl~~~   69 (591)
                      .+-|.||.+ ..+...+.-.+..+
T Consensus        15 t~e~~vd~~-tt~~ell~~V~~~L   37 (575)
T 2i1j_A           15 ELEFAIQQT-TTGKQLFDQVVKTI   37 (575)
T ss_dssp             EEEEEEETT-CBHHHHHHHHHHHH
T ss_pred             eEEEEECCC-CCHHHHHHHHHHHc
Confidence            566888988 77888888776655

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*

Probab=84.93  E-value=2.1  Score=45.76  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCC
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTP   82 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~   82 (591)
                      .+||+||+-|- ..|-.++.|+.+.  |..|+.+|+...
T Consensus        10 ~~KVvVA~SGG-lDSSvll~~L~e~--G~eViavtvd~G   45 (455)
T 1k92_A           10 GQRIGIAFSGG-LDTSAALLWMRQK--GAVPYAYTANLG   45 (455)
T ss_dssp             TSEEEEECCSS-HHHHHHHHHHHHT--TCEEEEEEEECC
T ss_pred             CCeEEEEEcCh-HHHHHHHHHHHHc--CCEEEEEEEEcC
Confidence            47999999999 8899999999875  789999999754

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.40  E-value=21  Score=37.88  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          442 ALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQD  482 (591)
Q Consensus       442 ~~~~~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~  482 (591)
                      +......|+.+..+...+++|+|.++....+.|++...+..
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (471)
T 3mq9_A          427 VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE  467 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555565555556666777666655555555444433

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1

Probab=84.15  E-value=1.3  Score=47.22  Aligned_cols=94  Identities=19%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc---CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS---GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~---~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      +++|+||+-|. ..|..+|.++....   .|-.|+++||.....         +.                  ..+-...
T Consensus        13 ~~~vlVa~SGG-~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr---------~~------------------s~~~~~~   64 (433)
T 1ni5_A           13 SRQILVAFSGG-LDSTVLLHQLVQWRTENPGVALRAIHVHHGLS---------AN------------------ADAWVTH   64 (433)
T ss_dssp             CSEEEEECCSB-HHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC---------SS------------------HHHHHHH
T ss_pred             CCEEEEEEcch-HHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC---------cc------------------cHHHHHH
Confidence            46999999999 88987777766544   466899999975431         10                  0112234


Q ss_pred             HHHHHHHcCCceEEEEEecC----Ch---H-----HHHHHHHHHcCCCEEEEccCCCch
Q 007740          121 CLLICRQMGVRAEKLDTESE----ST---E-----KGILELISHYGIRKLVMGAAADKH  167 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~----~~---~-----~~Ive~a~~~~idlIVmGs~g~~~  167 (591)
                      ...+|...||++..+.+...    ++   +     ..+.+++.  +++.|++|.|...-
T Consensus        65 v~~~~~~lgi~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~  121 (433)
T 1ni5_A           65 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQ  121 (433)
T ss_dssp             HHHHHHHTTCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHH
T ss_pred             HHHHHHHcCCcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHH
Confidence            56778889999876544321    11   1     11222222  48899999886543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.68  E-value=25  Score=31.75  Aligned_cols=48  Identities=19%  Similarity=0.154  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          363 AQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKR  410 (591)
Q Consensus       363 ~~~~~e~~~~r~e~~~~~~~~~~ae~e~~~a~~~a~~~e~~~~ee~~~  410 (591)
                      .....|+.+|..++.++..+|..||.+.-...+...+|.-.+++|...
T Consensus        54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~  101 (154)
T 2ocy_A           54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN  101 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777777777777777777777666666666666666666443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.33  E-value=2  Score=37.95  Aligned_cols=37  Identities=22%  Similarity=0.144  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 007740          395 RRAKASESLYAEELKRRKEFEEALANGKLELERMKKQ  431 (591)
Q Consensus       395 ~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e  431 (591)
                      .....+...+.+|..+|...|....+...+++.+-..
T Consensus        46 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas   82 (135)
T 2e7s_A           46 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   82 (135)
T ss_dssp             HHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555544445444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.32  E-value=18  Score=29.97  Aligned_cols=30  Identities=23%  Similarity=0.140  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007740          399 ASESLYAEELKRRKEFEEALANGKLELERM  428 (591)
Q Consensus       399 ~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~  428 (591)
                      .|...+.+|..+|...|....+...+++.+
T Consensus        30 ~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL   59 (97)
T 2eqb_B           30 RLREDIAKENELRTKAEEEADKLNKEVEDL   59 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555544444444443334333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=83.11  E-value=19  Score=29.99  Aligned_cols=54  Identities=15%  Similarity=0.152  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          446 KSLLESQIAESDQTAKELEQKIISAVELLQNYKKEQDELQMERDKAVKEAEELR  499 (591)
Q Consensus       446 ~~~l~~~~~e~~~~~~ele~~~~~~~~~l~~~~~~~~el~~~r~~~~~e~~~~~  499 (591)
                      ...++.++.....++..++..+..+...+......++.....+..+..++..+.
T Consensus        39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn   92 (101)
T 3u59_A           39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN   92 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444445555444444444444444444444444444444443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=82.60  E-value=22  Score=30.33  Aligned_cols=88  Identities=18%  Similarity=0.303  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          384 GKAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKEL  463 (591)
Q Consensus       384 ~~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~el  463 (591)
                      .+||++=+-|.+.-...-.++..++.+          ..+-+.+.+.   ++..=.+.++.....|+.+.+....++++|
T Consensus        10 SeAC~dGLrAq~ECrN~T~lLq~qLTq----------AQe~l~~~ea---QAaTCNqTV~tL~~SL~~ekaq~q~~vqeL   76 (121)
T 3mq7_A           10 SEAARDGLRAVMEARNVTHLLQQELTE----------AQKGFQDVEA---QAATANHTVMALMASLDAEKAQGQKKVEEL   76 (121)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777776666655444444444333          2222222221   122223334444444555444445556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 007740          464 EQKIISAVELLQNYKKEQDEL  484 (591)
Q Consensus       464 e~~~~~~~~~l~~~~~~~~el  484 (591)
                      +.++....+.|+....+.++|
T Consensus        77 qgEI~~Lnq~Lq~a~ae~erl   97 (121)
T 3mq7_A           77 EGEITTLNHKLQDASAEVERL   97 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666655555554444444444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.96  E-value=17  Score=32.27  Aligned_cols=78  Identities=12%  Similarity=0.069  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          385 KAEKDAIESIRRAKASESLYAEELKRRKEFEEALANGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELE  464 (591)
Q Consensus       385 ~ae~e~~~a~~~a~~~e~~~~ee~~~rk~~E~~l~~ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~~~~ele  464 (591)
                      ......+.|..-+.++-....+-    ..++..+.....++..+|.+...+..++..+.+....+..++.+.+.++..||
T Consensus        55 ~~r~aVLaALNiadEl~k~~~~~----~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           55 AELRTDMMYLNIADDYFKAKKMA----DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666665554433322    13334444444555555555555555555554444444444444444444444


Q ss_pred             HH
Q 007740          465 QK  466 (591)
Q Consensus       465 ~~  466 (591)
                      ..
T Consensus       131 ~~  132 (138)
T 3hnw_A          131 TE  132 (138)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}

Probab=81.84  E-value=15  Score=34.37  Aligned_cols=91  Identities=20%  Similarity=0.345  Sum_probs=58.2

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      .++|+|++-|- ..|-.++.++.+.  +..|+.+|+.....         +.     .               -+.....
T Consensus         3 ~~~v~v~lSGG-~DS~~ll~ll~~~--~~~v~~~~~~~~~~---------~~-----~---------------e~~~a~~   50 (219)
T 3bl5_A            3 KEKAIVVFSGG-QDSTTCLLWALKE--FEEVETVTFHYNQR---------HS-----Q---------------EVEVAKS   50 (219)
T ss_dssp             CCEEEEECCSS-HHHHHHHHHHHHH--CSEEEEEEEESSCT---------TC-----H---------------HHHHHHH
T ss_pred             CCCEEEEccCc-HHHHHHHHHHHHc--CCceEEEEEeCCCC---------CH-----H---------------HHHHHHH
Confidence            35899999999 8888888877664  46799999975421         00     0               0223445


Q ss_pred             HHHHcCCceEEEEEec-C----------C--------------------hH-HHHHHHHHHcCCCEEEEccCCCc
Q 007740          124 ICRQMGVRAEKLDTES-E----------S--------------------TE-KGILELISHYGIRKLVMGAAADK  166 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~-~----------~--------------------~~-~~Ive~a~~~~idlIVmGs~g~~  166 (591)
                      +|...||+...+-+.. .          .                    .. ..+.++|.+++++.|+.|.++..
T Consensus        51 ~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd  125 (219)
T 3bl5_A           51 IAEKLGVKNHLLDMSLLNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETD  125 (219)
T ss_dssp             HHHTTCCCEEEEECGGGGGGSTGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC--
T ss_pred             HHHHhCCCeEEEeChHHhhhcccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence            6777788765443321 0          0                    11 23368899999999999998654

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.44  E-value=16  Score=39.17  Aligned_cols=22  Identities=9%  Similarity=0.075  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 007740          358 LYDQLAQAMAEAENSRREAFEE  379 (591)
Q Consensus       358 ~~~~l~~~~~e~~~~r~e~~~~  379 (591)
                      |.++=+++..-++.||.++++-
T Consensus        55 LdkqErDltkrINELKnqLEdl   76 (562)
T 3ghg_A           55 IDEVNQDFTNRINKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHhhcCcHHHHHHHHHHHHHHH
Confidence            4444445555555555555544

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=81.40  E-value=1.3  Score=49.09  Aligned_cols=12  Identities=25%  Similarity=0.390  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 007740          368 EAENSRREAFEE  379 (591)
Q Consensus       368 e~~~~r~e~~~~  379 (591)
                      |++..|..|.++
T Consensus       301 e~qqm~~~a~e~  312 (575)
T 2i1j_A          301 DVQQMKAQAREE  312 (575)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333444444433

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=81.24  E-value=20  Score=29.55  Aligned_cols=38  Identities=13%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740          421 GKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQ  458 (591)
Q Consensus       421 ek~~~~~~k~e~~~~~~el~~~~~~~~~l~~~~~e~~~  458 (591)
                      ||+++..+....+-...++..+.++...|+.++.....
T Consensus         7 EKe~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~   44 (93)
T 3s4r_A            7 EKVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG   44 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45566666666666666666666666666666655443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.77  E-value=21  Score=29.01  Aligned_cols=11  Identities=36%  Similarity=0.483  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q 007740          407 ELKRRKEFEEA  417 (591)
Q Consensus       407 e~~~rk~~E~~  417 (591)
                      +...|++++..
T Consensus        33 ~e~~rkele~~   43 (89)
T 3bas_A           33 TERIKKELEEQ   43 (89)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444444

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}

Probab=80.74  E-value=4.4  Score=42.81  Aligned_cols=36  Identities=11%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCC
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTP   82 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~   82 (591)
                      .++|+|++-|- ..|-.++.|+.+.  |..|+.+||...
T Consensus         5 ~~kVvvalSGG-lDSsvll~lL~e~--G~eV~av~vd~g   40 (413)
T 2nz2_A            5 KGSVVLAYSGG-LDTSCILVWLKEQ--GYDVIAYLANIG   40 (413)
T ss_dssp             CEEEEEECCSS-HHHHHHHHHHHHT--TEEEEEEEEESS
T ss_pred             CCeEEEEEcCh-HHHHHHHHHHHHc--CCEEEEEEEECC
Confidence            35899999999 8899999998775  778999999754

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.29  E-value=55  Score=35.12  Aligned_cols=7  Identities=0%  Similarity=0.240  Sum_probs=3.3

Q ss_pred             cCHHHHH
Q 007740          518 FSFSEIE  524 (591)
Q Consensus       518 ~s~~el~  524 (591)
                      -+|++++
T Consensus       176 ~sY~~~Q  182 (562)
T 3ghg_A          176 KDYEDQQ  182 (562)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3455544

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2

Probab=80.02  E-value=7.5  Score=36.70  Aligned_cols=96  Identities=10%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~  123 (591)
                      +++|+||+-|. +.|...|..+.+..  ..|.++||.....        .+      +               ..+....
T Consensus        44 ~~~v~Va~SGG-kDS~vLL~ll~~~~--~~v~~v~vd~g~~--------~~------e---------------~~~~v~~   91 (215)
T 1sur_A           44 PGEYVLSSSFG-IQAAVSLHLVNQIR--PDIPVILTDTGYL--------FP------E---------------TYRFIDE   91 (215)
T ss_dssp             CSEEEEECCCC-TTHHHHHHHHHHHS--TTCEEEEEECSCB--------CH------H---------------HHHHHHH
T ss_pred             CCCEEEEecCC-HHHHHHHHHHHHhC--CCCeEEEeeCCCC--------CH------H---------------HHHHHHH
Confidence            46999999998 88987777666553  4688999875321        00      0               1222345


Q ss_pred             HHHHcCCceEEEEEecC---------C-----hH-----------HHHHHHHHHcCCCEEEEccCCCchhhHH
Q 007740          124 ICRQMGVRAEKLDTESE---------S-----TE-----------KGILELISHYGIRKLVMGAAADKHYKKK  171 (591)
Q Consensus       124 ~c~~~gV~~e~~vie~~---------~-----~~-----------~~Ive~a~~~~idlIVmGs~g~~~~~R~  171 (591)
                      +|.+.||++..+.....         .     +.           ..+-+++.+++++.|++|.|......|.
T Consensus        92 ~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r~  164 (215)
T 1sur_A           92 LTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRA  164 (215)
T ss_dssp             HHHHTTCEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTTT
T ss_pred             HHHHhCCcEEEEeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhhc
Confidence            67788998765433221         0     00           0234567788888999998875544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	591
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-08
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	6e-07
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-06
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-06
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-06
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	5e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	7e-06
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-05
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-05
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-05
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-05
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-05
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-05
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-05
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-05
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-05
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-05
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-05
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-05
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	7e-05
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-04
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-04
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-04
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-04
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-04
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-04
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	2e-04
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-04
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-04
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-04
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-04
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-04
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-04
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-04
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-04
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-04
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-04
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	0.001
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	0.001
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	0.001
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	0.001
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	0.001
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	0.002
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	0.002
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	0.003
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	0.003
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	0.004

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 514 FFSDFSFSEIEGATHNFDPSL---------KIGEGGYGSIYKGLLR-----HMQVAIKML 559
           F   F+F +   A   F   +          IG G +G +  G L+      + VAIK L
Sbjct: 3   FIDPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTL 62

Query: 560 HP-HSLQGPSEFQQEVGAYESFIFHFNLV 587
              ++ +   +F  E         H N++
Sbjct: 63  KSGYTEKQRRDFLSEASIMGQ-FDHPNVI 90

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 535 KIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           K+G+G +G ++ G      +VAIK L P +   P  F QE       + H  LV
Sbjct: 24  KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVM-KKLRHEKLV 75

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 500 KSRKEASSSSHMPQFFSDFSFSEIE-GATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAI 556
           ++R     ++H P+ + D+    +E G   ++    K+G G Y  +++ +    + +V +
Sbjct: 6   RARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVV 65

Query: 557 KMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           K+L P   +   + ++E+   E+     N++
Sbjct: 66  KILKPVKKK---KIKREIKILENLRGGPNII 93

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 535 KIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G G +G ++ G    H +VA+K L   S   P  F  E    +  + H  LV
Sbjct: 20  RLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQ-LQHQRLV 71

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 5e-06
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 516 SDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQE 573
           S  ++ + E    +     K+G G YG +Y+G+ +   + VA+K L   +++   EF +E
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKE 63

Query: 574 VGAYESFIFHFNLV 587
               +  I H NLV
Sbjct: 64  AAVMKE-IKHPNLV 76

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
            IG+G +G +  G  R  +VA+K +   +      F  E       + H NLV
Sbjct: 14  TIGKGEFGDVMLGDYRGNKVAVKCIKNDATA--QAFLAEASVMTQ-LRHSNLV 63

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 515 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLR----HMQVAIKMLHPH-SLQGPSE 569
           ++D  F +             IGEG +G + K  ++     M  AIK +  + S     +
Sbjct: 9   WNDIKFQD------------VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRD 56

Query: 570 FQQEVGAYESFIFHFNLV 587
           F  E+        H N++
Sbjct: 57  FAGELEVLCKLGHHPNII 74

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 512 PQFFSDFSF---SEIEGATHNFDPSLKIGEGGYGSIYKGLLRHM-------QVAIKMLHP 561
           P++FS        E E A      S ++G+G +G +Y+G+ + +       +VAIK ++ 
Sbjct: 1   PEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNE 60

Query: 562 -HSLQGPSEFQQEVGAYESFIFHFNLVDSF 590
             S++   EF  E    + F    ++V   
Sbjct: 61  AASMRERIEFLNEASVMKEFN-CHHVVRLL 89

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 535 KIGEGGYGSIYKGLLRHMQ-VAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           +IG G +G ++ G   +   VAIK +   +     +F +E       + H  LV
Sbjct: 12  EIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMK-LSHPKLV 63

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 535 KIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNL 586
            +G G +G + +            M VA+KML P +          E+        H N+
Sbjct: 30  TLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNI 89

Query: 587 V 587
           V
Sbjct: 90  V 90

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLV 587
           +IG G +G++YKG      VA+KML+  +   Q    F+ EVG       H N++
Sbjct: 15  RIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRK-TRHVNIL 67

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 534 LKIGEGGYGSIYKGLLRH----MQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNLV 587
           +++G G +GS+ +G+ R     + VAIK+L   + +    E  +E       + +  +V
Sbjct: 15  IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ-LDNPYIV 72

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           +     ++G G +G +  G  R    VAIKM+   S     EF +E     + + H  LV
Sbjct: 5   DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMN-LSHEKLV 62

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 517 DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHM-------QVAIKMLHPHSLQG-PS 568
           +     +E   +N +    IGEG +G +++     +        VA+KML   +     +
Sbjct: 2   NPKLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQA 61

Query: 569 EFQQEV 574
           +FQ+E 
Sbjct: 62  DFQREA 67

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 535 KIGEGGYGSIYKGLLRHMQ--VAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G+G +G +YK   +      A K++   S +   ++  E+    S   H N+V
Sbjct: 19  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILAS-CDHPNIV 72

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 535 KIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
            IG+G +G +++G  R  +VA+K+      +     + E+      + H N++
Sbjct: 10  SIGKGRFGEVWRGKWRGEEVAVKIFSSREERS-WFREAEIYQ-TVMLRHENIL 60

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 535 KIGEGGYGSIYKGLL-----RHMQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNL 586
           K+G+G +G + +G       + + VA+K L P  L   +   +F +EV A  S + H NL
Sbjct: 15  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS-LDHRNL 73

Query: 587 V 587
           +
Sbjct: 74  I 74

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 523 IEGATHNFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQG-PSEFQQEVGAYES 579
           +E    +F+   ++G G  G ++K   +   + +A K++H        ++  +E+     
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 580 FIFHFNLV 587
                 +V
Sbjct: 61  -CNSPYIV 67

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 535 KIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           KIG+G  G++Y  +      +VAI+ ++            E+        + N+V
Sbjct: 27  KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE-NKNPNIV 80

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 521 SEIEGATHNFDPSLKIGEGGYGSIYKGLLR------HMQVAIKMLHPHSLQG-PSEFQQE 573
           +EI            IG G +G +YKG+L+       + VAIK L     +    +F  E
Sbjct: 2   TEIH--PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGE 59

Query: 574 VGAYESFIFHFNLVDSF 590
            G       H N++   
Sbjct: 60  AGIMGQ-FSHHNIIRLE 75

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 535 KIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNL 586
            +G G +G +              +QVA+KML   +          E+        H N+
Sbjct: 44  VLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENI 103

Query: 587 V 587
           V
Sbjct: 104 V 104

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 535 KIGEGGYGSIYKGLLRH--MQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLV 587
           +IG G + ++YKGL     ++VA   L    L       F++E    +  + H N+V
Sbjct: 16  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG-LQHPNIV 71

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 535 KIGEGGYGSIYKGLLRH----MQVAIKMLHPHSLQG--PSEFQQEVGAYESFIFHFNLV 587
           ++G G +G++ KG  +       VA+K+L   +       E   E    +  + +  +V
Sbjct: 14  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQ-LDNPYIV 71

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPS---EFQQEVGAYESFIFH 583
           +F+    +G+G +G++Y    +     +A+K+L    L+      + ++EV   +S + H
Sbjct: 7   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRH 65

Query: 584 FNLV 587
            N++
Sbjct: 66  PNIL 69

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 535 KIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           ++G G +G +++   R      A K +           ++E+      + H  LV
Sbjct: 33  ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSV-LRHPTLV 86

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 535 KIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNLV 587
            IG G +G +Y G L       +  A+K L+  +  G  S+F  E    +    H N++
Sbjct: 34  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD-FSHPNVL 91

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHP-HSLQGPSEFQQEVGAYESFIFHFN 585
           ++D    +GEG YG +   + R     VA+K++    ++  P   ++E+      + H N
Sbjct: 6   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI-CINKMLNHEN 64

Query: 586 LV 587
           +V
Sbjct: 65  VV 66

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 22/141 (15%), Positives = 62/141 (43%)

Query: 360 DQLAQAMAEAENSRREAFEEALRRGKAEKDAIESIRRAKASESLYAEELKRRKEFEEALA 419
             L +   E      +A E      K+++   ++I +   + +   +E++  +   E+  
Sbjct: 158 QDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQ 217

Query: 420 NGKLELERMKKQHDEVMEELQIALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK 479
                L  M+++++++ME+ + +  +     ++  E+D+     EQ+   A++L +  + 
Sbjct: 218 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277

Query: 480 EQDELQMERDKAVKEAEELRK 500
            ++  Q E      E ++L+ 
Sbjct: 278 LKEGFQKESRIMKNEIQDLQT 298

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 535 KIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPS---EFQQEVGAYESFIFHFNLV 587
            +G GG   ++       H  VA+K+L     + PS    F++E     + + H  +V
Sbjct: 14  ILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA-LNHPAIV 70

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 535 KIGEGGYGSIYKGLLRH---------MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHF 584
            +GEG +G +                 +VA+KML   + +   S+   E+   +    H 
Sbjct: 20  PLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHK 79

Query: 585 NLVDSF 590
           N+++  
Sbjct: 80  NIINLL 85

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSE---FQQEVGAYESFIFH 583
           +F     +G+G +G ++    +      AIK L    +    +      E         H
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62

Query: 584 FNLV 587
             L 
Sbjct: 63  PFLT 66

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 535 KIGEGGYGSIYKGLLRHM-------QVAIKMLHPHSLQGP-SEFQQEVGAYESFIFHFNL 586
            +G G +G + +     +        VA+KML   +          E+        H N+
Sbjct: 20  PLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV 79

Query: 587 V 587
           V
Sbjct: 80  V 80

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 5/42 (11%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 535 KIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEV 574
           ++G G +G +++ + +        K ++          + E+
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEI 77

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHF 584
           NF    KIGEG YG +YK   +     VA+K +   +     PS   +E+   +  + H 
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE-LNHP 61

Query: 585 NLV 587
           N+V
Sbjct: 62  NIV 64

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 530 FDPSLKIGEGGYGSIYKGLLRH------MQVAIKMLHP-HSLQGPSEFQQEVGAYESFIF 582
           F     +G G +G++YKGL         + VAIK L    S +   E   E     S + 
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS-VD 69

Query: 583 HFNLV 587
           + ++ 
Sbjct: 70  NPHVC 74

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 535 KIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNLV 587
            +G G +  +     +     VAIK +   +L+G     + E+      I H N+V
Sbjct: 16  VLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHK-IKHPNIV 70

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 535 KIGEGGYGSIYKGLLRHMQ-VAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLV 587
           KIGEG YG +YK    + +  A+K +         PS   +E+   +  + H N+V
Sbjct: 9   KIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKE-LKHSNIV 63

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 535 KIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPS---EFQQEVGAYESFIFHFNLV 587
           +IG G +G++Y          VAIK +     Q      +  +EV   +  + H N +
Sbjct: 22  EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK-LRHPNTI 78

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSE---FQQEVGAYESFIFH 583
           +F     +G G +G ++    RH     A+K+L    +    +      E     S + H
Sbjct: 5   DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML-SIVTH 63

Query: 584 FNLV 587
             ++
Sbjct: 64  PFII 67

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 535 KIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLV 587
           KIG G +G IY G       +VAIK+    +     +   E   Y+       + 
Sbjct: 14  KIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIP 66

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 535 KIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQG-PSEFQQEVGAYESFIFHFNLV 587
            IGEG YG +         ++VAIK + P   Q       +E+        H N++
Sbjct: 15  YIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLR-FRHENII 69

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQEV 574
           +F     IG GG+G +Y           A+K L    +   QG +    E 
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNER 55

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 535 KIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSLQGPSE-FQQEVGAYESFIFHFNLV 587
            IGEG +G +++G+        + VAIK     +     E F QE         H ++V
Sbjct: 14  CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQ-FDHPHIV 71

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 535 KIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF 590
           KIGEG YG+++K   R  H  VA+K +         PS   +E+   +  + H N+V   
Sbjct: 9   KIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLH 67

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEV 574
           +FD    +G+G +G +     +      A+K+L    +    E    V
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTV 53

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 529 NFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHF 584
           +++    IG G YG   K   +     +  K L   S+          EV      + H 
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE-LKHP 63

Query: 585 NLV 587
           N+V
Sbjct: 64  NIV 66

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 535 KIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQE 573
            +G GG+GS+Y G+    ++ VAIK +    +    E    
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNG 51

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 18/97 (18%)

Query: 478 KKEQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIG 537
           KK  ++  ++   A  + + L+K    + +++ + QF       +             +G
Sbjct: 7   KKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQF-------DRIK---------TLG 50

Query: 538 EGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQ 572
            G +G +     +      A+K+L    +    + + 
Sbjct: 51  TGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	591
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.9
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	99.9
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.86
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.83
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.77
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	99.76
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.76
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	98.73
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.63
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.62
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.61
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.61
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	98.57
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.5
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	98.5
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	98.49
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	98.48
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	98.47
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	98.46
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	98.43
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	98.43
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	98.4
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	98.4
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	98.39
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.39
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	98.38
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	98.38
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	98.35
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	98.34
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	98.33
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	98.31
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	98.3
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	98.28
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	98.28
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	98.26
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	98.25
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	98.23
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	98.22
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	98.22
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	98.22
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	98.22
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	98.17
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	98.16
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	98.15
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	98.14
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	98.13
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	98.12
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	98.11
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	98.1
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	98.09
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	98.07
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	98.05
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	98.04
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	98.01
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	97.95
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	97.89
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.88
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	97.87
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	97.87
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	97.68
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	97.68
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	97.66
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	97.62
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	97.45
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	97.09
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	97.04
d1wy5a1	216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	94.14
d1ni5a1	227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	87.74
d2c5sa1	218	Thiamine biosynthesis protein ThiI, C-terminal dom	86.26
d1np7a2	204	Cryptochrome {Synechocystis sp., pcc 6803 [TaxId:	82.72

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=2.3e-23  Score=192.06  Aligned_cols=148  Identities=10%  Similarity=0.129  Sum_probs=121.6

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccc-----cCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPV-----MGTKFPASSLEEEKVQAYREIERQDMHNH  117 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  117 (591)
                      ++||||||+| +.|.+||+||++++  .+++|+|+||.++......     ..+........+.....+.+...+++++.
T Consensus         4 ~~ILvavD~s-~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           4 KKILYPTDFS-ETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             CEEEEECCSC-HHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCC-HHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            6999999999 99999999999998  6889999999877543211     01111111222334455667778889999


Q ss_pred             HHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          118 LDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       118 L~~~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      |+.+...|...||+++..+..| +|+..|+++|+++++|+||||+||++++.++|+||   ++.+|+++++  |+||||.
T Consensus        83 l~~~~~~~~~~gv~~~~~~~~G-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS---~a~~vl~~s~--~pVlvV~  156 (160)
T d1mjha_          83 MENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS---VTENVIKKSN--KPVLVVK  156 (160)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH---HHHHHHHHCC--SCEEEEC
T ss_pred             HHHHHHHHHhcCCeEEEEEEec-cHHHHHhhhhhccccceEEeccCCCCcccccccCc---HHHHHHhcCC--CCEEEEc
Confidence            9999999999999999888876 89999999999999999999999999999999998   9999999999  9999997


Q ss_pred             CC
Q 007740          198 NG  199 (591)
Q Consensus       198 kg  199 (591)
                      +.
T Consensus       157 ~~  158 (160)
T d1mjha_         157 RK  158 (160)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=2.9e-23  Score=194.13  Aligned_cols=146  Identities=17%  Similarity=0.235  Sum_probs=109.8

Q ss_pred             CEEEEeecCChH---------HHHHHHHHHHHhc--CCC---eEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVK---------ESKSVLLWALQNS--GGK---RICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIE  110 (591)
Q Consensus        45 ~kIlVAVD~S~~---------~S~~Al~wAl~~~--~g~---~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (591)
                      .||+||||+| .         .|++||+||++++  .++   .|+++||..+.......   .+...........+.+..
T Consensus         2 ~ki~vavd~s-~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   77 (171)
T d2gm3a1           2 TKVMVAVNAS-TIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDD---VDSIYASPEDFRDMRQSN   77 (171)
T ss_dssp             EEEEEECCBC-SSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-------------CCCCSHHHHHHHTTSH
T ss_pred             CEEEEEEcCC-cccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEecccccccccc---ccccccCHHHHHHHHHHH
Confidence            4899999998 5         7999999999998  445   59999998765322111   111122335555666667


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCc
Q 007740          111 RQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPAS  190 (591)
Q Consensus       111 ~~~~~~lL~~~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~  190 (591)
                      .+.++++|+.+...|...|++++..+..| ++.+.|+++|+++++|+||||+||++++.|+|+||   |+.+|+++++  
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~lGS---v~~~vi~~~~--  151 (171)
T d2gm3a1          78 KAKGLHLLEFFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGT---VSAFCVKHAE--  151 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECCCC--------C---HHHHHHHHCS--
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEEEeC-ChHHHHHHHHhhcCCcEEEeccCCccccccCccCc---HHHHHHhCCC--
Confidence            78889999999999999999999877666 88999999999999999999999999999999999   9999999999  


Q ss_pred             cEEEEEcCCc
Q 007740          191 CHIWFICNGN  200 (591)
Q Consensus       191 C~V~vV~kgk  200 (591)
                      |+|+||..+.
T Consensus       152 cpVlvV~~~~  161 (171)
T d2gm3a1         152 CPVMTIKRNA  161 (171)
T ss_dssp             SCEEEEECCG
T ss_pred             CCEEEEeCCC
Confidence            9999997544

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.1e-21  Score=175.38  Aligned_cols=132  Identities=16%  Similarity=0.182  Sum_probs=106.2

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||||+| +.|.+|++||+.++  .+++|+|+||+++.....  +.         .......+...+.+++.|+.+.
T Consensus         2 k~Ilv~~D~s-~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~l~~~~   69 (135)
T d2z3va1           2 KTILLAYDGS-EHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL--GE---------PFFEEALRRRLERAEGVLEEAR   69 (135)
T ss_dssp             CEEEEECCSS-HHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTC--CT---------THHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCC-HHHHHHHHHHHHHHHHcCCEEEEEEEecCCcccc--cc---------chhHHHHHHHHHHHHHHHHHHH
Confidence            5899999999 99999999999988  789999999998753221  11         1222333344556666666654


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEE
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV  196 (591)
                      .   ..|+.....++..++|.++|+++|+++++|+||||+||++++.|+++||   ++.+|+++++  |+|++|
T Consensus        70 ~---~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs---~~~~ll~~~~--~pVlvV  135 (135)
T d2z3va1          70 A---LTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGS---QSQRVVAEAP--CPVLLV  135 (135)
T ss_dssp             H---HHCCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEESSCSSSCBCSSCBH---HHHHHHHHCS--SCEEEE
T ss_pred             H---hcCCCeEEEEEEcCChHHHHHHHhhhhheeeEEeccCCCCcccccccCc---HHHHHHHhCC--CCEEeC
Confidence            4   4566666566666799999999999999999999999999999999988   9999999999  999997

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=1.2e-20  Score=170.75  Aligned_cols=140  Identities=11%  Similarity=0.094  Sum_probs=105.8

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc-CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS-GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~-~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      =++||||||+| +.|.+||+||+.++ .++.++++|++.+..........        .....+.....+.+++.++.+.
T Consensus         5 yk~ILv~vD~s-~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~   75 (147)
T d1tq8a_           5 YKTVVVGTDGS-DSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADI--------LKDESYKVTGTAPIYEILHDAK   75 (147)
T ss_dssp             CCEEEEECCSS-HHHHHHHHHHHHHHTTTSEEEEEEECCC----------------------------CCTHHHHHHHHH
T ss_pred             CCEEEEEECCC-HHHHHHHHHHHHHHhcCCCEEEEEEEeccccccccccc--------chhhhHHHHHHHHHHHHHHHHH
Confidence            37999999999 99999999999988 55555566665543221111110        1112334455667788999999


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      ..|.+.|+......+..+++.+.|+++++++++|+||||++|++++.++++||   ++.+|+++++  |+||||.
T Consensus        76 ~~~~~~~~~~~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~Gs---~~~~ll~~~~--~pVlvV~  145 (147)
T d1tq8a_          76 ERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGS---VPANVSRRAK--VDVLIVH  145 (147)
T ss_dssp             HHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBB---HHHHHHHHTT--CEEEEEC
T ss_pred             HHHHHcCCCcEEEEEEecChHHHHHHhhhccceeEEEecCCCCCccccccccc---HHHHHHHhCC--CCEEEEe
Confidence            99999998855556666789999999999999999999999999999999999   9999999998  9999996

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.77  E-value=6.6e-20  Score=163.68  Aligned_cols=131  Identities=10%  Similarity=0.039  Sum_probs=102.5

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCccccc--CCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVM--GTKFPASSLEEEKVQAYREIERQDMHNHLD  119 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~  119 (591)
                      =++||||+|+| +.|++||+||++++  .+++|+|+||+++.......  ....+.       .....+...+.+++.|+
T Consensus         4 mk~ILv~~D~S-~~s~~al~~A~~~a~~~~a~l~llhv~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~~~~~~l~   75 (138)
T d1q77a_           4 MKVLLVLTDAY-SDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPF-------PPEIKEESKKRIERRLR   75 (138)
T ss_dssp             CEEEEEEESTT-CCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCC-------CTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-HHHHHHHHHHHHhhhhccceEEEEEEccCcccccccccccccch-------hhhhhhhhhhhccccch
Confidence            47999999999 99999999999998  68999999999754321110  001111       11234445667777888


Q ss_pred             HHHHHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          120 MCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       120 ~~~~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      .+...+...++.++..+..| +|.+.|+++|+++++|+||||+||++++.|.++|+              .|+++||.
T Consensus        76 ~~~~~~~~~~~~~~~~v~~G-~~~~~I~~~a~~~~~DLIV~Gs~g~~~l~r~l~g~--------------~~~~livk  138 (138)
T d1q77a_          76 EVWEKLTGSTEIPGVEYRIG-PLSEEVKKFVEGKGYELVVWACYPSAYLCKVIDGL--------------NLASLIVK  138 (138)
T ss_dssp             HHHHHHHSCCCCCCEEEECS-CHHHHHHHHHTTSCCSEEEECSCCGGGTHHHHHHS--------------SSEEEECC
T ss_pred             hhcccccccceeEEEeeecc-hhHHHHHHhhhhccCCEEEEecCCCcHHHHHhcCC--------------CCCEEEeC
Confidence            88777888888888776665 89999999999999999999999999999999998              38888863

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.76  E-value=4e-19  Score=159.24  Aligned_cols=133  Identities=16%  Similarity=0.125  Sum_probs=101.4

Q ss_pred             CEEEEeecCChHHHHHHHHHHHHhc--CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007740           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (591)
Q Consensus        45 ~kIlVAVD~S~~~S~~Al~wAl~~~--~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~  122 (591)
                      ++||||||+| +.|+.||.||+.++  .+++|+++||++++.....  ...+      .....+.+...+   +....+.
T Consensus         3 k~ILv~vD~s-~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~--~~~~------~~~~~~~~~~~~---~~~~~~~   70 (140)
T d1jmva_           3 KHILVAVDLS-EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT--GLID------VNMSSMQDRIST---ETQKALL   70 (140)
T ss_dssp             SEEEEEECCS-TTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC--CCEE------HHHHHHTTCCCC---HHHHHHH
T ss_pred             CeEEEEECCC-HHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccc--cccc------cchHHHHHHHHH---HHHHHHH
Confidence            6999999999 99999999999988  7899999999987643221  1111      122222222222   3334444


Q ss_pred             HHHHHcCCceEEEEEecCChHHHHHHHHHHcCCCEEEEccCCCchhhHHhccCCcchHHHHhccCCCccEEEEEc
Q 007740          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (591)
Q Consensus       123 ~~c~~~gV~~e~~vie~~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l~Gs~s~Va~~V~~~Ap~~C~V~vV~  197 (591)
                      ..+...++...+.++..+++.++|+++++++++|+||||+||++++   .+||   ++.+|+++++  |+||||.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~I~~~a~~~~~dliV~G~~~~~~~---~lgs---~~~~li~~~~--~pVliVp  137 (140)
T d1jmva_          71 DLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWS---KLMS---STRQVMNTIK--IDMLVVP  137 (140)
T ss_dssp             HHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEECCCCHH---HHHH---HHHHHHTTCC--SEEEEEE
T ss_pred             HHHHhcCCceEEEEEEecCHHHHHHHhhhhchhhEEEeccCCCCCC---Cccc---HHHHHHhccC--CCEEEEe
Confidence            4566667776667777789999999999999999999999998876   3677   9999999998  9999985

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.2e-09  Score=109.69  Aligned_cols=75  Identities=25%  Similarity=0.391  Sum_probs=60.6

Q ss_pred             ccccCHHHHHHhhcCCCcC---------CccccccceeEEEEEEc--C---eEEEEEEccCCCC-CChhHHHHHHHHHHc
Q 007740          515 FSDFSFSEIEGATHNFDPS---------LKIGEGGYGSIYKGLLR--H---MQVAIKMLHPHSL-QGPSEFQQEVGAYES  579 (591)
Q Consensus       515 ~~~~s~~el~~aT~~F~~~---------~~iG~G~~G~Vykg~l~--g---~~VAVK~L~~~~~-~~~~~F~~Ev~il~s  579 (591)
                      ...|+|+++..+|.+|+..         ++||+|+||.||+|...  |   ..||||.+..... ...+.|.+|+.+| .
T Consensus         4 ~d~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~   82 (299)
T d1jpaa_           4 IDPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIM-G   82 (299)
T ss_dssp             CCGGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHH-T
T ss_pred             cCCCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHH-H
Confidence            4568888999999888643         57999999999999985  3   3699999865433 3356799999999 9


Q ss_pred             CCCCCCccccc
Q 007740          580 FIFHFNLVDSF  590 (591)
Q Consensus       580 ~lrHpNLV~li  590 (591)
                      +++|||||+|+
T Consensus        83 ~l~HpnIv~l~   93 (299)
T d1jpaa_          83 QFDHPNVIHLE   93 (299)
T ss_dssp             TCCCTTBCCEE
T ss_pred             hCCCCCCccEE
Confidence            99999999875

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.8e-09  Score=102.36  Aligned_cols=61  Identities=28%  Similarity=0.416  Sum_probs=53.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|....+||+|+||.||+|.++ +..||||+++... ....+|.+|+.++ .+++|||||+|+
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~-~~~~~~~~Ev~~~-~~l~HpnIv~~~   65 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVM-MNLSHEKLVQLY   65 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSS-SCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCc-CCHHHHHHHHHHH-HhcCCCceeeEE
Confidence            46777889999999999999997 6799999997543 3467899999999 999999999985

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6.9e-09  Score=102.48  Aligned_cols=60  Identities=27%  Similarity=0.495  Sum_probs=51.0

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.++ ++.||||++.... ...+.|.+|+.++ .+++|||||+++
T Consensus        14 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l-~~l~HpnIv~~~   74 (272)
T d1qpca_          14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLM-KQLQHQRLVRLY   74 (272)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            3445568999999999999998 6889999996543 4467899999999 999999999975

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.4e-09  Score=101.46  Aligned_cols=58  Identities=26%  Similarity=0.395  Sum_probs=49.2

Q ss_pred             CCcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |....+||+|+||.||+|.+.|+.||||+++..  ...+.|.+|+.++ ++++|||||+++
T Consensus         9 ~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~--~~~~~~~~E~~~l-~~l~HpnIv~~~   66 (262)
T d1byga_           9 LKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKND--ATAQAFLAEASVM-TQLRHSNLVQLL   66 (262)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTEEEEEEECCCC--C--HHHHHTHHHH-TTCCCTTBCCEE
T ss_pred             eEEeEEEecCCCeEEEEEEECCeEEEEEEECcH--HHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            344567999999999999999999999999653  3357899999999 999999999875

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1e-08  Score=100.74  Aligned_cols=60  Identities=23%  Similarity=0.329  Sum_probs=50.9

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.+. +..||||++... .....+|.+|+.++ .+++|||||+|+
T Consensus         6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l-~~l~HpnIv~~~   66 (263)
T d1sm2a_           6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVM-MKLSHPKLVQLY   66 (263)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHH-HhcCCCCccccc
Confidence            3445568999999999999997 678999999654 34467899999999 999999999885

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=9.7e-09  Score=102.30  Aligned_cols=60  Identities=32%  Similarity=0.533  Sum_probs=51.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |+.||||++.... ...++|.+|+.+| .+++|||||+++
T Consensus        18 ~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il-~~l~HpnIv~~~   79 (287)
T d1opja_          18 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVM-KEIKHPNLVQLL   79 (287)
T ss_dssp             GEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHH-HhCCCCCEecCC
Confidence            4555678999999999999986  7899999996543 4467899999999 999999999875

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2e-08  Score=99.37  Aligned_cols=61  Identities=31%  Similarity=0.505  Sum_probs=50.7

Q ss_pred             cCCCcCCccccccceeEEEEEEcCeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|.+.+ .||||+++..  .......|.+|+.++ .+++|||||+++
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~~~~E~~~l-~~l~HpnIv~~~   70 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVL-RKTRHVNILLFM   70 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTTHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             ccEEEEEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHHHHHHHHHHHHHH-HhCCCCCEeeee
Confidence            346667789999999999998765 5999999653  334467899999999 999999999875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=8.8e-09  Score=103.13  Aligned_cols=68  Identities=25%  Similarity=0.377  Sum_probs=55.6

Q ss_pred             HHHHhhcCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          522 EIEGATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       522 el~~aT~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +++..+++|.....||+|+||.||+|.+.|       +.||||+++..... ....|.+|+.+| ++++|||||+++
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il-~~l~h~niv~~~   82 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM-AEFDNPNIVKLL   82 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHH-HhcCCCCcccce
Confidence            344456778888899999999999999753       68999999764433 246799999999 999999999874

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.6e-08  Score=99.07  Aligned_cols=60  Identities=30%  Similarity=0.527  Sum_probs=51.3

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.++ +..||||++... ....+.|.+|+.++ .+++|||||+|+
T Consensus        18 ~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l-~~l~h~nIv~~~   78 (285)
T d1fmka3          18 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVM-KKLRHEKLVQLY   78 (285)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHH-HhcccCCEeEEE
Confidence            4555678999999999999998 568999999654 34567899999999 999999999985

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2e-08  Score=99.54  Aligned_cols=60  Identities=30%  Similarity=0.492  Sum_probs=49.3

Q ss_pred             CCcCCccccccceeEEEEEEcC------eEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRH------MQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g------~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...++||+|+||.||+|.+++      ..||||+++..... ....|.+|+.++ .+++|||||+++
T Consensus         9 ~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il-~~l~H~nIv~~~   75 (283)
T d1mqba_           9 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIM-GQFSHHNIIRLE   75 (283)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             eEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHH-HhcCCCCEeeee
Confidence            5566789999999999999863      47999999654332 245799999999 999999999875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.3e-08  Score=97.79  Aligned_cols=56  Identities=21%  Similarity=0.336  Sum_probs=44.6

Q ss_pred             CccccccceeEEEEEEc----CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR----HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++||+|+||.||+|.++    +..||||++......  ....|.+|+.+| .+++|||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~   74 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM-QQLDNPYIVRMI   74 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHH-HhCCCCCCceEE
Confidence            46999999999999875    367999999653322  246799999999 999999999875

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.1e-08  Score=99.95  Aligned_cols=61  Identities=20%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++........+.|.+|+.+| .+++|||||+|+
T Consensus        13 ~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~   75 (288)
T d2jfla1          13 FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL-ASCDHPNIVKLL   75 (288)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHH-HHCCCTTBCCEE
T ss_pred             CeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            3455568999999999999986  789999999776666678899999999 999999999875

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.1e-08  Score=98.04  Aligned_cols=60  Identities=20%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...  |..||||++........+.|.+|+.++ .+++|||||+++
T Consensus        22 Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~   83 (293)
T d1yhwa1          22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVM-RENKNPNIVNYL   83 (293)
T ss_dssp             BCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHH-HhCCCCCEeeEe
Confidence            445568999999999999875  899999999765555567899999999 999999999875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.5e-08  Score=99.41  Aligned_cols=61  Identities=26%  Similarity=0.389  Sum_probs=49.4

Q ss_pred             CCCcCCccccccceeEEEEEEc--C----eEEEEEEccC-CCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--H----MQVAIKMLHP-HSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g----~~VAVK~L~~-~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||+|+||.||+|.+.  |    ..||||++.. ......+.|.+|+.++ .+++|||||+|+
T Consensus        10 dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~HpnIv~l~   77 (317)
T d1xkka_          10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM-ASVDNPHVCRLL   77 (317)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            4666789999999999999885  3    3699999965 3445567899999999 999999999985

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.7e-08  Score=97.17  Aligned_cols=55  Identities=25%  Similarity=0.420  Sum_probs=46.1

Q ss_pred             ccccccceeEEEEEEc----CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          535 KIGEGGYGSIYKGLLR----HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       535 ~iG~G~~G~Vykg~l~----g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +||+|+||.||+|.++    +..||||++..... .....|.+|+.+| .+++|||||+++
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~   75 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIM-HQLDNPYIVRLI   75 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHH-HhCCCCCEeeEe
Confidence            4999999999999875    35799999965433 2356799999999 999999999875

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=4.8e-08  Score=98.26  Aligned_cols=60  Identities=25%  Similarity=0.253  Sum_probs=50.4

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...+.||+|+||.||+|...  |..||||++.......   ...|.+|+.+| .+++|||||+++
T Consensus        17 y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il-~~l~HpnIv~~~   81 (309)
T d1u5ra_          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL-QKLRHPNTIQYR   81 (309)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             cEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHH-HHCCCCCEeeEE
Confidence            666778999999999999875  7899999996543322   35689999999 999999999875

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.1e-08  Score=96.01  Aligned_cols=62  Identities=23%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||.++.....  ....|.+|+.++ .+++|||||+++
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~   69 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLL-RELKHPNIVRYY   69 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHT-TSCCCTTBCCEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHH-HHCCCCCEeeEE
Confidence            35666678999999999999886  789999999664322  245689999999 999999999875

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.9e-08  Score=98.58  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=53.0

Q ss_pred             hcCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .++|....+||+|+||.||+|...  |..||||+++.... .....|.+|+.+| .+++|||||+++
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il-~~l~HpnIv~l~   70 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-HECNSPYIVGFY   70 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGG-GGCCCTTBCCEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            456777789999999999999986  89999999965433 3356799999999 999999999875

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=98.40  E-value=5.6e-08  Score=96.08  Aligned_cols=61  Identities=28%  Similarity=0.379  Sum_probs=51.1

Q ss_pred             CCCcCCccccccceeEEEEEEc-CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|....+||+|+||.||+|... |..||||++....  ......|.+|+.+| .+++|||||+++
T Consensus         3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~~~   66 (286)
T d1ob3a_           3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISIL-KELKHSNIVKLY   66 (286)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGG-GGCCCTTBCCEE
T ss_pred             CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHH-HhCCCCcEEeee
Confidence            4555678999999999999887 8999999995532  23357899999999 999999999875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.4e-08  Score=97.34  Aligned_cols=56  Identities=27%  Similarity=0.377  Sum_probs=46.5

Q ss_pred             CccccccceeEEEEEEcC-----eEEEEEEccCC-CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLRH-----MQVAIKMLHPH-SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~g-----~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||+|+||.||+|.+..     ..||||+++.. .......|.+|+.+| ++++|||||+++
T Consensus        33 ~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l-~~l~HpnIv~~~   94 (311)
T d1r0pa_          33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIM-KDFSHPNVLSLL   94 (311)
T ss_dssp             EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHH-HTCCCTTBCCCC
T ss_pred             eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHH-HhCCCCCEeEEe
Confidence            579999999999999852     36899999653 333357799999999 999999999985

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8e-08  Score=95.53  Aligned_cols=62  Identities=19%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC------CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL------QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~------~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...  |..||||++.....      .....|.+|+.+| .+++|||||+++
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~   79 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSIL-KEIQHPNVITLH   79 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            34666778999999999999986  88999999854221      2357799999999 999999999875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.2e-08  Score=95.65  Aligned_cols=62  Identities=32%  Similarity=0.425  Sum_probs=50.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|...+.||+|+||.||+|...  |+.||||++....  ......|.+|+.+| .+++|||||+++
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il-~~l~Hp~Iv~~~   67 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL-KELNHPNIVKLL   67 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHH-HhCCCCcEEEec
Confidence            46667789999999999999985  8999999996532  23467899999999 999999999875

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.4e-08  Score=96.04  Aligned_cols=62  Identities=24%  Similarity=0.476  Sum_probs=48.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||+++... ......|.+|+.++ .+++|||||+++
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l-~~l~HpnIv~~~   69 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN-KMLNHENVVKFY   69 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHH-HTCCCTTBCCEE
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHH-HhCCCCCEeeEe
Confidence            34556678999999999999986  7899999996532 23345699999999 999999999875

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.6e-08  Score=96.50  Aligned_cols=61  Identities=23%  Similarity=0.411  Sum_probs=47.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--Ce--EEEEEEccCC-CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HM--QVAIKMLHPH-SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~--~VAVK~L~~~-~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|....+||+|+||.||+|.+.  |.  .||||++... .......|.+|+.+| +++ +|||||+++
T Consensus        11 ~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l-~~l~~HpnIv~~~   77 (309)
T d1fvra_          11 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVL-CKLGHHPNIINLL   77 (309)
T ss_dssp             GCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHH-TTCCCCTTBCCEE
T ss_pred             HcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHH-HhccCCCCEeeEE
Confidence            4555678999999999999986  33  6889998543 333467899999999 998 799999875

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=98.35  E-value=6.1e-08  Score=99.24  Aligned_cols=62  Identities=19%  Similarity=0.303  Sum_probs=52.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||++..........|.+|+.+| .+++|||||+++
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~   89 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTM-SVLRHPTLVNLH   89 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHH-HHTCCTTBCCEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            35666778999999999999986  899999999665444457799999999 999999999875

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-07  Score=93.43  Aligned_cols=56  Identities=27%  Similarity=0.442  Sum_probs=46.8

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .+||+|+||.||+|...  |..||||.+....  ......|.+|+.+| .+++|||||+++
T Consensus        15 ~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~   74 (270)
T d1t4ha_          15 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEML-KGLQHPNIVRFY   74 (270)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHH-HhCCCCCeeeEE
Confidence            36999999999999986  6799999985532  22346799999999 999999999875

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=6.7e-08  Score=96.93  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=49.2

Q ss_pred             CCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.+.       ++.||||+++.... .....|.+|+.++ .+++|||||+++
T Consensus        21 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il-~~l~h~nIv~~~   89 (308)
T d1p4oa_          21 KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM-KEFNCHHVVRLL   89 (308)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHG-GGCCCTTBCCEE
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHH-HHcCCCCEeeee
Confidence            3455678999999999999875       47899999975432 2245699999999 999999999875

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=98.31  E-value=9.3e-08  Score=97.89  Aligned_cols=62  Identities=13%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||+++.........|.+|+.+| .+++|||||+++
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il-~~l~HpnIv~~~   92 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIM-NQLHHPKLINLH   92 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHH-TTCCSTTBCCEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            34666678999999999999975  899999999765444456789999999 999999999875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=2.2e-07  Score=91.35  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---hhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---PSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |+.||||++.......   ...|.+|+.++ .+++|||||+++
T Consensus         8 rY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l-~~~~hpniv~~~   73 (277)
T d1o6ya_           8 RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNA-AALNHPAIVAVY   73 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             eeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHH-HhcCCCCCCccc
Confidence            3555678999999999999875  8999999997644333   35699999999 999999999874

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=9.2e-08  Score=94.29  Aligned_cols=61  Identities=30%  Similarity=0.518  Sum_probs=41.6

Q ss_pred             CCCcCCccccccceeEEEEEEc---C--eEEEEEEccCCCC---CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR---H--MQVAIKMLHPHSL---QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~---g--~~VAVK~L~~~~~---~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.+.   +  ..||||++.....   ...+.|.+|+.+| .+++|||||+++
T Consensus         9 d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l-~~l~H~nIv~~~   77 (273)
T d1u46a_           9 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAM-HSLDHRNLIRLY   77 (273)
T ss_dssp             GEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             HeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            3445568999999999999875   2  4799999965422   2246799999999 999999999875

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.2e-07  Score=92.98  Aligned_cols=61  Identities=21%  Similarity=0.419  Sum_probs=50.9

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++...   .......|.+|+.++ .+++|||||+++
T Consensus         7 dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~~~   72 (263)
T d2j4za1           7 DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ-SHLRHPNILRLY   72 (263)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             HeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHH-HhcCCCCCCeEE
Confidence            4666678999999999999986  789999998542   233457799999999 999999999875

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=1.6e-07  Score=94.15  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC-CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS-LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~-~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...  |..||||++.... ......|.+|+.+| .+++|||||+++
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il-~~l~HpnIv~l~   73 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL-HKIKHPNIVALD   73 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHH-HTCCCTTBCCEE
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHH-HhCCCCCCCcEE
Confidence            34666678999999999999986  7899999996533 22345688999999 999999999875

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.9e-07  Score=91.65  Aligned_cols=61  Identities=25%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             CCCcCCccccccceeEEEEEEc-----CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-----HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-----g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...     +..||||.+...... ....|.+|+.++ .+++|||||+++
T Consensus         8 ~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l-~~l~HpnIv~l~   74 (273)
T d1mp8a_           8 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTM-RQFDHPHIVKLI   74 (273)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHH-HTCCCTTBCCEE
T ss_pred             HeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHH-HhCCCCCEeeEE
Confidence            3445568999999999999875     256999998654332 246799999999 999999999875

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.9e-07  Score=90.66  Aligned_cols=61  Identities=31%  Similarity=0.419  Sum_probs=50.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCC--CCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHS--LQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~--~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++....  ......|.+|+.+| .+++|||||+++
T Consensus         3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il-~~l~h~niv~~~   67 (292)
T d1unla_           3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL-KELKHKNIVRLH   67 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             CCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHH-HhcCcCCEEeec
Confidence            3555678999999999999985  7899999995432  22357899999999 999999999874

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=1.6e-07  Score=94.57  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||+++..   .......|.+|+.++ .+++|||||+++
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~   70 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML-SIVTHPFIIRMW   70 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HSCCBTTBCCEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHH-HhccCcChhhee
Confidence            34666778999999999999976  899999998542   234467899999999 999999999875

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.7e-07  Score=91.70  Aligned_cols=56  Identities=21%  Similarity=0.248  Sum_probs=44.2

Q ss_pred             CccccccceeEEEEEEc--CeEEEEEEccCCCCC-----ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-----GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       534 ~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~-----~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++||+|+||.||+|...  |+.||||++......     -...|.+|+.++ .+++|||||+++
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il-~~l~hpnIv~~~   66 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLL-QELSHPNIIGLL   66 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHH-HhCCCCCEeEEE
Confidence            47999999999999875  789999999543221     135689999999 999999999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.6e-07  Score=93.45  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=50.8

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++...   .......|.+|+.++ .+++|||||+++
T Consensus         9 dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~   74 (288)
T d1uu3a_           9 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVM-SRLDHPFFVKLY   74 (288)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HHCCSTTBCCEE
T ss_pred             CCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHH-HHcCCCCeeEEE
Confidence            4666678999999999999985  789999998542   233457799999999 999999999875

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.6e-07  Score=93.92  Aligned_cols=56  Identities=21%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             CcCCccccccceeEEEEEEcCeEEEEEEccCCCCCChhHHH--HHHHHHHcCCCCCCccccc
Q 007740          531 DPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQ--QEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       531 ~~~~~iG~G~~G~Vykg~l~g~~VAVK~L~~~~~~~~~~F~--~Ev~il~s~lrHpNLV~li  590 (591)
                      .....||+|+||.||+|.+.|..||||+++...   ...|.  .|+..+ .+++|||||+++
T Consensus         6 ~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~---~~~~~~e~ei~~~-~~~~HpnIv~~~   63 (303)
T d1vjya_           6 VLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQT-VMLRHENILGFI   63 (303)
T ss_dssp             EEEEEEECCSSSEEEEEEETTEEEEEEEECGGG---HHHHHHHHHHHTS-TTCCCTTBCCEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCEEEEEEEECccc---hhHHHHHHHHHHH-hhCCCCcCcceE
Confidence            334579999999999999999999999996432   33444  455566 688999999875

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.1e-07  Score=90.99  Aligned_cols=62  Identities=24%  Similarity=0.380  Sum_probs=50.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC--CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH--SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |+.||||++...  .......|.+|+.+| .+++|||+++++
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il-~~l~h~nii~~~   75 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL-QLLKHENVVNLI   75 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHH-HHCCCTTBCCEE
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHH-HHhcCCCccceE
Confidence            45666678999999999999985  899999998543  233457799999999 999999999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.8e-07  Score=91.97  Aligned_cols=60  Identities=12%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||.+.... .....|.+|+.+| .+++|||||+++
T Consensus         6 rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il-~~l~HpnIv~~~   67 (321)
T d1tkia_           6 KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISIL-NIARHRNILHLH   67 (321)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHH-HHSCCTTBCCEE
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHH-HhCCCCCCCeEE
Confidence            3445568999999999999886  7899999996532 2235688999999 999999999875

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.8e-07  Score=92.66  Aligned_cols=61  Identities=23%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC-CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      .|....+||+|+||.||+|...  |+.||||++..... .....|.+|+.+| .+++|||+|+++
T Consensus         9 rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il-~~l~hp~iv~~~   72 (345)
T d1pmea_           9 RYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKIL-LRFRHENIIGIN   72 (345)
T ss_dssp             TEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHH-HHCCCTTBCCCC
T ss_pred             CeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHH-HHcCCCCCCcEE
Confidence            4555678999999999999875  89999999965432 2245789999999 999999999875

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.7e-07  Score=91.79  Aligned_cols=62  Identities=19%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCC--ChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~--~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...  |..||||++......  ....+.+|+.+| .+++|||||+++
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il-~~l~hpniv~l~   83 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLL-KHMRHENVIGLL   83 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHH-HHCCBTTBCCCS
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHH-HhcCCCCeeEEE
Confidence            34555678999999999999975  899999999653221  245689999999 999999999874

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=3.8e-07  Score=93.10  Aligned_cols=61  Identities=20%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |..||||++...   .......|.+|+.+| .+++|||||+++
T Consensus        42 ~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~~~  107 (350)
T d1rdqe_          42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRIL-QAVNFPFLVKLE  107 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-TTCCCTTBCCEE
T ss_pred             CeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHH-HHcCCCcEeecc
Confidence            4555678999999999999986  899999998532   233457799999999 999999999875

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4e-07  Score=92.50  Aligned_cols=62  Identities=18%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||++...  |..||||++...   .......+.+|+.+| .+++|||||+++
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il-~~l~hp~Iv~l~   71 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL-QNTRHPFLTALK   71 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HSCCCTTBCCEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHH-HhCCCCCEEEEE
Confidence            45777789999999999999975  899999999542   233467799999999 999999999875

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7e-07  Score=90.97  Aligned_cols=62  Identities=19%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|....+||+|+||+||+|...  |..||||++.....  .....+.+|+.++ .+++|||||+++
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il-~~l~hpnIv~~~   82 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM-KCVNHKNIISLL   82 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCTTBCCCS
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHH-HhcCCCCeeEEE
Confidence            44666779999999999999875  89999999965332  2235689999999 999999999874

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.7e-07  Score=91.24  Aligned_cols=62  Identities=23%  Similarity=0.377  Sum_probs=48.0

Q ss_pred             cCCCcCCccccccceeEEEEEEcC-------eEEEEEEccCC-CCCChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPH-SLQGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~g-------~~VAVK~L~~~-~~~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|....+||+|+||.||+|...+       ..||||++... .......|.+|+.+| .++ +|||||+++
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~~HpnIv~l~  107 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMM-TQLGSHENIVNLL  107 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHH-HHhcCCCcEeEEE
Confidence            356666789999999999999853       36999999653 334457899999999 887 899999875

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.4e-07  Score=90.18  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=50.5

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC--CChhHHHHHHHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~--~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      +.|.....||+|+||.||+|...  |..||||++.....  .....+.+|+.+| .+++|||+|+++
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il-~~l~h~~iv~~~   83 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL-KHMKHENVIGLL   83 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHH-HHCCCTTBCCCS
T ss_pred             CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHH-HhcCCCCeeeEE
Confidence            34666678999999999999865  89999999965432  2245689999999 999999999864

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.3e-07  Score=90.28  Aligned_cols=61  Identities=25%  Similarity=0.468  Sum_probs=48.7

Q ss_pred             CCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCCC-ChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQ-GPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~~-~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      +|.....||+|+||.||+|.+.       ++.||||+++..... ....|.+|+.++ .++ +|||||+++
T Consensus        24 ~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~-~~l~~HpnIv~~~   93 (311)
T d1t46a_          24 RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL-SYLGNHMNIVNLL   93 (311)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             HeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHH-HhccCCCCEEEEE
Confidence            4445678999999999999873       368999999764432 345699999999 888 799999875

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.05  E-value=8.4e-07  Score=87.46  Aligned_cols=61  Identities=16%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCC---------hhHHHHHHHHHHcCCC-CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG---------PSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~---------~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      +|.....||+|+||.||++...  |+.||||++.......         ...|.+|+.++ .++. |||||+++
T Consensus         4 ~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~~hpnIv~~~   76 (277)
T d1phka_           4 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL-RKVSGHPNIIQLK   76 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHH-HHHTTCTTBCCEE
T ss_pred             cCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHH-HHhcCCCCeEEEE
Confidence            4566778999999999999874  8999999996533221         23588999999 9997 99999875

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=8.6e-07  Score=90.15  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=45.9

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |...++||+|+||.||+|...  |..||||++.....    .+.+|+.+| .+++|||||+++
T Consensus        22 Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il-~~l~h~niv~~~   79 (350)
T d1q5ka_          22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIM-RKLDHCNIVRLR   79 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHH-HHCCCTTBCCEE
T ss_pred             cEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHH-HhcCCCCCCcEE
Confidence            334468999999999999986  88999999965432    235799999 999999999874

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=98.01  E-value=1.1e-06  Score=88.38  Aligned_cols=59  Identities=17%  Similarity=0.372  Sum_probs=49.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCC-CCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIF-HFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lr-HpNLV~li  590 (591)
                      ++|....+||+|+||.||+|...  |+.||||++...   ....+.+|+.+| .+++ |||||+++
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il-~~l~~hpnIv~~~   96 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKIL-ENLRGGPNIITLA   96 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHH-HHHTTSTTBCCEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHH-HhccCCCCCcEEE
Confidence            35666678999999999999975  899999999642   356899999999 8885 99999874

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.2e-06  Score=88.17  Aligned_cols=62  Identities=21%  Similarity=0.213  Sum_probs=49.6

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHHHHHHHc-CCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEVGAYES-FIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~Ev~il~s-~lrHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...  |..||||+++..   .......+..|+.++ . .++|||||+++
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l-~~~~~hp~Iv~~~   69 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVL-SLAWEHPFLTHMF   69 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HHHTTCTTBCCEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHH-HHhCCCCcEEEEE
Confidence            35666779999999999999986  899999999642   234456788888887 5 68999999875

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.5e-06  Score=86.43  Aligned_cols=60  Identities=23%  Similarity=0.371  Sum_probs=42.4

Q ss_pred             CCcCCccccccceeEEEEEEcC---------eEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLRH---------MQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~g---------~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      |.....||+|+||.||+|...+         +.||||+++.... ....+|.+|+..+ .++ +|||||+++
T Consensus        15 ~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l-~~~~~HpnIv~~~   85 (299)
T d1fgka_          15 LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM-KMIGKHKNIINLL   85 (299)
T ss_dssp             EEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             eEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHH-HHhcCCCeEEecc
Confidence            3345689999999999998642         4799999976543 3357789999988 777 899999875

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.3e-06  Score=84.71  Aligned_cols=63  Identities=27%  Similarity=0.357  Sum_probs=46.8

Q ss_pred             hcCCCcCCccccccceeEEEEEEc---CeEEEEEEccCC--CCCChhHHHHHHHHHHcC---CCCCCccccc
Q 007740          527 THNFDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPH--SLQGPSEFQQEVGAYESF---IFHFNLVDSF  590 (591)
Q Consensus       527 T~~F~~~~~iG~G~~G~Vykg~l~---g~~VAVK~L~~~--~~~~~~~F~~Ev~il~s~---lrHpNLV~li  590 (591)
                      .++|.....||+|+||.||+|...   +..||||++...  .......+.+|+.+| ..   ++|||||+++
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l-~~l~~~~HpnIv~~~   76 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL-RHLETFEHPNVVRLF   76 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHH-HHHHHTCCTTBCCEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHH-HHHhhcCCCCcceee
Confidence            345666778999999999999874   567999998542  222344577888776 54   4899999875

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.87  E-value=1.9e-06  Score=88.23  Aligned_cols=62  Identities=24%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             cCCCcCCccccccceeEEEEEEc--CeEEEEEEccCC---CCCChhHHHHH---HHHHHcCCCCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQE---VGAYESFIFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~---~~~~~~~F~~E---v~il~s~lrHpNLV~li  590 (591)
                      ++|...++||+|+||.||+|...  |..||||++...   .......+.+|   +.++ ..++|||||+++
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l-~~~~hpnIv~l~   73 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLV-STGDCPFIVCMS   73 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHH-SSSCCTTBCCEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHH-hcCCCCcEEEEE
Confidence            46777789999999999999986  889999998532   12233445444   7788 889999999874

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=8.6e-07  Score=86.97  Aligned_cols=61  Identities=21%  Similarity=0.410  Sum_probs=47.6

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCC------CChhHHHHHHHHHHcCCC--CCCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL------QGPSEFQQEVGAYESFIF--HFNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~------~~~~~F~~Ev~il~s~lr--HpNLV~li  590 (591)
                      .|.....||+|+||.||+|...  |..||||++.....      .....|.+|+.++ .+++  |||||+++
T Consensus         5 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il-~~l~~~h~nIv~~~   75 (273)
T d1xwsa_           5 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL-KKVSSGFSGVIRLL   75 (273)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHH-HHHCSSSCSBCCEE
T ss_pred             eEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHH-HHhccCCCCccEEE
Confidence            3555678999999999999985  78999999864321      1234578999999 8886  99999875

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=9.8e-06  Score=81.77  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=45.4

Q ss_pred             cCCCcC-CccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcC-CCCCCccccc
Q 007740          528 HNFDPS-LKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESF-IFHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~-~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~-lrHpNLV~li  590 (591)
                      ++|... .+||+|+||.||+|...  |..||||++..     ...+.+|+.++ .+ ++|||||+++
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~-~~~~~hpnIv~l~   71 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELH-WRASQCPHIVRIV   71 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHH-HHHTTSTTBCCEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHH-HHhcCCCCCCeEE
Confidence            345433 35999999999999875  78999999853     35788999987 65 4899999874

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=8.6e-06  Score=80.37  Aligned_cols=58  Identities=24%  Similarity=0.316  Sum_probs=46.8

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCccccc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNLVDSF  590 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNLV~li  590 (591)
                      |.....||+|+||.||+|...  |..||||++.....  ...|..|+.++ ..++|+|+|.++
T Consensus         9 Y~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~-~~l~~~~~i~~~   68 (299)
T d1ckia_           9 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIY-KMMQGGVGIPTI   68 (299)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHH-HHSTTSTTCCCE
T ss_pred             EEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHH-HHccCCCcccEE
Confidence            555678999999999999976  78999999865432  24588999999 999988877543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.1e-06  Score=86.32  Aligned_cols=62  Identities=21%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             cCCCcCCccccccceeEEEEEE-----cCeEEEEEEccCC----CCCChhHHHHHHHHHHcCCCC-CCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLL-----RHMQVAIKMLHPH----SLQGPSEFQQEVGAYESFIFH-FNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l-----~g~~VAVK~L~~~----~~~~~~~F~~Ev~il~s~lrH-pNLV~li  590 (591)
                      ++|.....||+|+||.||++..     .|..||||++...    .......|.+|+.++ .+++| ||||+++
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il-~~l~h~pnIv~~~   95 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVL-EHIRQSPFLVTLH   95 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHH-HHHHTCTTBCCEE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHH-HhccCCCeEEEee
Confidence            4577778999999999999975     2689999998542    122356789999999 99977 8999874

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=6.7e-06  Score=81.27  Aligned_cols=62  Identities=21%  Similarity=0.339  Sum_probs=44.9

Q ss_pred             cCCCcCCccccccceeEEEEEEc-------CeEEEEEEccCCCC-CChhHHHHHHHHHHcCC-CCCCccccc
Q 007740          528 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEVGAYESFI-FHFNLVDSF  590 (591)
Q Consensus       528 ~~F~~~~~iG~G~~G~Vykg~l~-------g~~VAVK~L~~~~~-~~~~~F~~Ev~il~s~l-rHpNLV~li  590 (591)
                      ++|.....||+|+||.||+|...       ++.||||++..... .....|.+|+.++ .++ +|||||.++
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l-~~~~~h~~iv~~~   83 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL-IHIGHHLNVVNLL   83 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHH-HHHCCCTTBCCEE
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHH-HhhcCCCeEEEee
Confidence            34566678999999999999874       25799999965433 2346688888888 665 788998764

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.45  E-value=2.9e-05  Score=76.50  Aligned_cols=59  Identities=25%  Similarity=0.470  Sum_probs=45.1

Q ss_pred             CCCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCC-CCccccc
Q 007740          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFH-FNLVDSF  590 (591)
Q Consensus       529 ~F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrH-pNLV~li  590 (591)
                      +|.....||+|+||.||+|...  |..||||++.....  ...+.+|+.++ ..+.| +|++.++
T Consensus         6 ~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~e~~~~-~~l~~~~~i~~~~   67 (293)
T d1csna_           6 HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTY-KLLAGCTGIPNVY   67 (293)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHH-HHTTTCTTCCCEE
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC--cHHHHHHHHHH-HHhcCCCCCCEEE
Confidence            4555678999999999999975  79999999855432  23577888888 87866 7777653

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.09  E-value=0.0002  Score=65.43  Aligned_cols=56  Identities=11%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             CCccccccceeEEEEEEc-CeEEEEEEccCCCCC-------------C-----hhHHHHHHHHHHcCCCCCCcccc
Q 007740          533 SLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQ-------------G-----PSEFQQEVGAYESFIFHFNLVDS  589 (591)
Q Consensus       533 ~~~iG~G~~G~Vykg~l~-g~~VAVK~L~~~~~~-------------~-----~~~F~~Ev~il~s~lrHpNLV~l  589 (591)
                      .++||+|+||.||+|... |..||||+++.....             .     ...+..|...+ .++.|+|++..
T Consensus         5 g~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~v~~~   79 (191)
T d1zara2           5 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRAL-QKLQGLAVPKV   79 (191)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHH-HHTTTSSSCCE
T ss_pred             CCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHH-HHccCCCcceE
Confidence            468999999999999876 899999988642110             0     12345688888 89999998764

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=5e-05  Score=76.44  Aligned_cols=55  Identities=13%  Similarity=0.173  Sum_probs=42.3

Q ss_pred             CCcCCccccccceeEEEEEEc--CeEEEEEEccCCCCCChhHHHHHHHHHHcCCCCCCc
Q 007740          530 FDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEVGAYESFIFHFNL  586 (591)
Q Consensus       530 F~~~~~iG~G~~G~Vykg~l~--g~~VAVK~L~~~~~~~~~~F~~Ev~il~s~lrHpNL  586 (591)
                      |....+||+|+||.||+|...  |..||||++..... ....+.+|+.++ ..++|+|+
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l-~~l~~~~~   71 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLL-QRVNDADN   71 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHH-HHHHHTCC
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHH-HHhcchhh
Confidence            344578999999999999875  89999999965322 235688999988 87776443

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.14  E-value=0.16  Score=46.58  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=62.9

Q ss_pred             CCCEEEEeecCChHHHHHHHHHHHHhc---CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 007740           43 IEDKIYVAVAKQVKESKSVLLWALQNS---GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD  119 (591)
Q Consensus        43 ~~~kIlVAVD~S~~~S~~Al~wAl~~~---~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~  119 (591)
                      .+++|+|||-|. ..|...|..+....   ....|+++||.....         +      .            ...-..
T Consensus        23 ~~~kv~Va~SGG-~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r---------~------~------------s~~~~~   74 (216)
T d1wy5a1          23 GERRVLIAFSGG-VDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR---------E------S------------AERDEE   74 (216)
T ss_dssp             SCCEEEEECCSS-HHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS---------T------H------------HHHHHH
T ss_pred             CCCeEEEEeCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEeecccc---------c------c------------hhhhhh
Confidence            357999999999 88986666555433   344799999964321         0      0            011112


Q ss_pred             HHHHHHHHcCCceEEEEEec--------CCh--------HHHHHHHHHHcCCCEEEEccCCCch
Q 007740          120 MCLLICRQMGVRAEKLDTES--------EST--------EKGILELISHYGIRKLVMGAAADKH  167 (591)
Q Consensus       120 ~~~~~c~~~gV~~e~~vie~--------~~~--------~~~Ive~a~~~~idlIVmGs~g~~~  167 (591)
                      ....+|...||++...-+..        .+.        ...+.++++++++|.|++|.|....
T Consensus        75 ~~~~~~~~l~i~~~i~~~~~~~~~~~~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~dD~  138 (216)
T d1wy5a1          75 FCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDL  138 (216)
T ss_dssp             HHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHH
T ss_pred             HHHHHHHhhhhhhhhhccchhhhccCCccchHHHHHHHHHHHhhhhccccccceeEeeeeccch
Confidence            34567888899876443321        111        2456788999999999999997644

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.74  E-value=0.38  Score=44.07  Aligned_cols=95  Identities=19%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhc---CCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNS---GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~---~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~  120 (591)
                      .++|+|||-|. ..|..+|..+.+..   .+-.|+++||.+...         +.                  .......
T Consensus        13 ~kkvlva~SGG-~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r---------~~------------------s~~~~~~   64 (227)
T d1ni5a1          13 SRQILVAFSGG-LDSTVLLHQLVQWRTENPGVALRAIHVHHGLS---------AN------------------ADAWVTH   64 (227)
T ss_dssp             CSEEEEECCSB-HHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC---------SS------------------HHHHHHH
T ss_pred             CCcEEEEecCc-HHHHHHHHHHHHHHHhCCCceEEEEEeCCCCC---------cc------------------hhhhHHH
Confidence            57999999999 88987776665543   567899999975321         00                  0112333


Q ss_pred             HHHHHHHcCCceEEEEEecCCh----------HHHHHHHHHHcCCCEEEEccCCCc
Q 007740          121 CLLICRQMGVRAEKLDTESEST----------EKGILELISHYGIRKLVMGAAADK  166 (591)
Q Consensus       121 ~~~~c~~~gV~~e~~vie~~~~----------~~~Ive~a~~~~idlIVmGs~g~~  166 (591)
                      ...+|...||++....+.....          .......+...+++.|++|-|...
T Consensus        65 ~~~~~~~~~i~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~gH~~dD  120 (227)
T d1ni5a1          65 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDD  120 (227)
T ss_dssp             HHHHHHHTTCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHHH
T ss_pred             HHHHHhhccCcceeeeccccccccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            5677999999876544332111          112223445678888888877543

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Thiamine biosynthesis protein ThiI, C-terminal domain
species: Bacillus anthracis [TaxId: 1392]

Probab=86.26  E-value=2.5  Score=37.33  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             CCEEEEeecCChHHHHHHHHHHHHhcCCCeEEEEEEeCC
Q 007740           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTP   82 (591)
Q Consensus        44 ~~kIlVAVD~S~~~S~~Al~wAl~~~~g~~I~llHV~~~   82 (591)
                      ..||+|++-|. ..|--++.++.+  .|..|++||+...
T Consensus         4 ~gKvvv~~SGG-~DS~vla~ll~k--~g~~v~av~~~~~   39 (218)
T d2c5sa1           4 GGKVMVLLSGG-IDSPVAAYLTMK--RGVSVEAVHFHSP   39 (218)
T ss_dssp             TEEEEEECCSS-SHHHHHHHHHHH--BTEEEEEEEEECT
T ss_pred             CCEEEEEecCc-HHHHHHHHHHHH--cCCeEEEEEEeCC
Confidence            34999999999 778777766655  3678999999754

>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: Cryptochrome
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=82.72  E-value=4.5  Score=35.64  Aligned_cols=96  Identities=14%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             HHHHHHHHhcCCCeEEEEEEeCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEec
Q 007740           60 SVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTES  139 (591)
Q Consensus        60 ~Al~wAl~~~~g~~I~llHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~~gV~~e~~vie~  139 (591)
                      .||..|++  .+..|+.|+|++|........+.....        ..+   ..=..+-|..+..-+++.|+..  ++.. 
T Consensus        22 ~aL~~A~~--~~~~vi~vyi~dp~~~~~~~~~~~~~~--------~~r---~~fl~~sL~~L~~~L~~~g~~L--~v~~-   85 (204)
T d1np7a2          22 EPLHRALK--SGLAITAVYCYDPRQFAQTHQGFAKTG--------PWR---SNFLQQSVQNLAESLQKVGNKL--LVTT-   85 (204)
T ss_dssp             HHHHHHHH--TTSEEEEEEEECGGGGSBCTTSCBSSC--------HHH---HHHHHHHHHHHHHHHHHTTCCE--EEEE-
T ss_pred             HHHHHHHh--cCCcEEEEEEECchHhcCccccccccc--------HHH---HHHHHHHHHHHHHHHHhccchh--hhhh-
Confidence            36666664  567899999998864322111100010        011   1223344555556667778773  3444 


Q ss_pred             CChHHHHHHHHHHcCCCEEEEccCCCchhhHHh
Q 007740          140 ESTEKGILELISHYGIRKLVMGAAADKHYKKKM  172 (591)
Q Consensus       140 ~~~~~~Ive~a~~~~idlIVmGs~g~~~~~R~l  172 (591)
                      +++.+.|.+++++++|+.|+. .+..+...+..
T Consensus        86 G~~~~~l~~l~~~~~i~~V~~-n~~~~~~e~~r  117 (204)
T d1np7a2          86 GLPEQVIPQIAKQINAKTIYY-HREVTQEELDV  117 (204)
T ss_dssp             SCHHHHHHHHHHHTTEEEEEE-ECCCSHHHHHH
T ss_pred             hhhHHHHHHHHHHhhhhheee-eccccHHHHHH
Confidence            478999999999999999986 44445555443