Citrus Sinensis ID: 007744

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
MVREKKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAHAIDLGIDDEDSDSDEEDDSESEGEENEGGSRKRRRVDLERGEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
cccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHccccccccccccEEEEEEccccccHHHHHccccccEEEEEEccccccccccccccccEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHccccHHHccccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHccccHHHHcccccccHHccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEcEEEEEEEcccccccccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHccccccEEEEEEEcccccccEEccccccEEEEEEccccccccccccHccccccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEccccHHHEEHcccHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHcHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccEEEEEEEcccccHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHcccEEEEcccccEEEEEcHHHHHHHHHHHHHcc
MVREKKLDSFYTRLResatassdspllifpstsdvdSLCALKIILHVLesdsvryacypvssfqeihkyagpnlgssseTQITILLINWgshrdlkrvlnlgpkarvfvvdshrpihlhnlsdgndnvvvlytpddeqqadlayDFNVSALAHAIDlgiddedsdsdeeddsesegeeneggsrkrrrvdlergedpEKVFKRMKREYYrmgtfhgkpsgclmydlshsLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHInssgnldavtsvtlkdgtkirapesariayddeprLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERflpeygltdfyYRSFLRLHgyssrvsaADVVYGVTALLESFvtsdgscaskqfgvaydalslsNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGairsgrkfrwvkledsadtkflgypQALTKFCYFLMDALKEKGARMKPLVCAclaqepnkvLIVGvcgkprlgalrgnafgvSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
MVREKKLDSFYTRLresatassdsplliFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHlhnlsdgndnVVVLYTPDDEQQADLAYDFNVSALAHAIDLGiddedsdsdeeddsesegeeneggsrkrrrvdlergedpekvfkRMKREYYrmgtfhgkpsGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHinssgnldavTSVTlkdgtkirapesariayddePRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSaaimksgairsgrkfrwvKLEDsadtkflgypQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
MVREKKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAHAIDLGIddedsdsdeeddsesegeeneggsRKRRRVDLERGEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
*************************LLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKY*************TILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAHAIDLG**********************************************KREYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIR***SARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRL****
***EKKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLAYDF********************************************************RMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHI**************************RIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLES*******CA**QFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
MVREKKLDSFYTRL*********SPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAHAIDLGID*********************************GEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
MVREKKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDD**QADLAY*FN********************************************ERGEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGN****************APESARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
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MVREKKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAHAIDLGIDDEDSDSDEEDDSESEGEENEGGSRKRRRVDLERGEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query591 2.2.26 [Sep-21-2011]
O74113638 Cell division control pro yes no 0.964 0.893 0.289 1e-66
O75419566 Cell division control pro yes no 0.901 0.941 0.289 9e-59
Q55GA4644 Cell division control pro yes no 0.631 0.579 0.337 4e-57
Q9Z1X9566 Cell division control pro yes no 0.896 0.936 0.294 7e-53
Q9YHZ6567 Cell division control pro N/A no 0.866 0.902 0.292 3e-52
Q08032650 Cell division control pro yes no 0.932 0.847 0.237 3e-37
Q99107 845 Protein TSD2 OS=Ustilago N/A no 0.358 0.250 0.303 5e-22
>sp|O74113|CDC45_SCHPO Cell division control protein 45 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sna41 PE=1 SV=1 Back     alignment and function desciption
 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 185/638 (28%), Positives = 316/638 (49%), Gaps = 68/638 (10%)

Query: 9   SFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHK 68
           S Y +++E A+ S    + +F +  D D+LCA K++  +L+ D + +   PVS ++++ +
Sbjct: 10  SAYLKIKE-ASVSGGCTVQLFVAL-DPDALCACKLLSTLLKGDFISHKIRPVSGYRDLEQ 67

Query: 69  YAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNV 128
            A   L   +E    I+L+N G+  DL   L       ++V+DSHRP +L+N+   N N+
Sbjct: 68  -ANKTLLEQNEDIKFIILLNCGTMVDLNNYLVSMEDVSIYVIDSHRPHNLNNIYIEN-NI 125

Query: 129 VVLYTPDDEQQADLAYDFNVSALAHAIDLGIDDEDSDSDEEDDSESEGE----------E 178
            V    D E+  +  +D   +  +H +    D+E+SDS  E + E E +          +
Sbjct: 126 FVFDDGDIEEDMNKIHDAWYAFNSHELS---DEENSDSSNEREEEVEDDNRSVESYSSSD 182

Query: 179 NEGGSRKR-------RRVDLERGEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLR 231
            +  SR+R       RR +++      K F  +  EYY  G+++G+    +++ ++  L 
Sbjct: 183 YQARSRRRFSEETTQRRAEIKEKRKKRKEFASILSEYYEKGSWYGESITNILFAVASMLG 242

Query: 232 KNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIR 291
           +  N++LWLA V LT   +H + + + +      L+  +N          +  +   K  
Sbjct: 243 REDNDMLWLAIVGLTCLEIHCQSSKKYFNRSYSLLKDEVNRLNPSPLENQIVGRAHGK-- 300

Query: 292 APESARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALV 351
            P    I  +DE R ML++ W+L+DSML S+Y+ ++L  WS+ G K+L  LLA+MG +LV
Sbjct: 301 TPHDQSIRLEDEFRFMLVRHWSLYDSMLHSAYVGSRLHIWSEEGRKRLHKLLAKMGLSLV 360

Query: 352 DCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTAL 411
           +C+Q + +MN+++K+ +K   +RF P YGL D  + SF R +G+   +SA+DV Y ++AL
Sbjct: 361 ECKQTYIHMNMDLKKTLKSSLKRFAPFYGLDDVIFHSFTRTYGFKCTLSASDVSYAISAL 420

Query: 412 LE--------------------------SFVTSDGSCASKQFGVAYDALSLSNLDQLKSG 445
           LE                           F  +        F  AYDAL   ++D L+  
Sbjct: 421 LEMGNTGVLLQSKTVARSPDMTEEEYLEKFENAQNQEWLHNFYDAYDALD--DVDSLERA 478

Query: 446 MQQAIKVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMD 505
           ++ A+ +QRAI+R G   +++  AI++ R FR+  + +  D K   +P ALTK   ++ +
Sbjct: 479 LKLAMHLQRAIVRTG-ITLLEKRAIKTLRSFRFGLINEGPDLKIFMHPLALTKMSLWIAE 537

Query: 506 ALKEK-----GARMKPLVCACLAQEPNKVLIVGV-----CGKPRLGALRG---NAFGVSF 552
           A+ E+       R  PLV A   +E N+ LIVG                G   N FGV+F
Sbjct: 538 AINEQEREFGKLRHLPLVLAAFVEEKNRYLIVGTSTSAFTSNEDDDDDDGHGHNRFGVAF 597

Query: 553 RNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEK 590
           +  A    A    + FE+S I   +  +  F+  L+ K
Sbjct: 598 QEVANMTSATLQMDCFEASVIECQKSDLGVFLESLSFK 635
Required for initiation of chromosomal DNA replication. May have a role in regulating the MCM proteins nda1 and nda4.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|O75419|CDC45_HUMAN Cell division control protein 45 homolog OS=Homo sapiens GN=CDC45 PE=1 SV=1 Back     alignment and function description
>sp|Q55GA4|CDC45_DICDI Cell division control protein 45 homolog OS=Dictyostelium discoideum GN=cdc45 PE=3 SV=1 Back     alignment and function description
>sp|Q9Z1X9|CDC45_MOUSE Cell division control protein 45 homolog OS=Mus musculus GN=Cdc45 PE=2 SV=2 Back     alignment and function description
>sp|Q9YHZ6|CDC45_XENLA Cell division control protein 45 homolog OS=Xenopus laevis GN=cdc45 PE=1 SV=2 Back     alignment and function description
>sp|Q08032|CDC45_YEAST Cell division control protein 45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC45 PE=1 SV=1 Back     alignment and function description
>sp|Q99107|TSD2_USTMA Protein TSD2 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=TSD2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
255584002595 conserved hypothetical protein [Ricinus 1.0 0.993 0.835 0.0
225446875592 PREDICTED: cell division control protein 0.998 0.996 0.827 0.0
147853521592 hypothetical protein VITISV_006310 [Viti 0.998 0.996 0.826 0.0
449443718593 PREDICTED: cell division control protein 1.0 0.996 0.817 0.0
449526956593 PREDICTED: LOW QUALITY PROTEIN: cell div 1.0 0.996 0.816 0.0
15230255596 cell division control protein 45 [Arabid 1.0 0.991 0.761 0.0
297831382600 hypothetical protein ARALYDRAFT_480015 [ 0.991 0.976 0.745 0.0
356527358592 PREDICTED: cell division control protein 0.993 0.991 0.726 0.0
356567846589 PREDICTED: protein TSD2-like [Glycine ma 0.994 0.998 0.729 0.0
224133838511 predicted protein [Populus trichocarpa] 0.859 0.994 0.826 0.0
>gi|255584002|ref|XP_002532747.1| conserved hypothetical protein [Ricinus communis] gi|223527524|gb|EEF29649.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/595 (83%), Positives = 550/595 (92%), Gaps = 4/595 (0%)

Query: 1   MVREKKLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPV 60
           MVRE++++SFY+RLRES +ASS SPLLIFPSTSDVDSLCALKII H+LESDSVRYACYPV
Sbjct: 1   MVREQRVESFYSRLRESVSASSLSPLLIFPSTSDVDSLCALKIIFHILESDSVRYACYPV 60

Query: 61  SSFQEIHKYAGPNLGSSSETQ-ITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLH 119
           SSFQEIHKYAGP+L S + T  I+ILLINWG  RDL+R+LNLG KARVFV+D HRPIHLH
Sbjct: 61  SSFQEIHKYAGPDLSSQNSTDPISILLINWGCQRDLRRLLNLGTKARVFVIDCHRPIHLH 120

Query: 120 NLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAHAIDLGIDDEDSDSDEEDDSESEGEE- 178
           NLSD N++V+VLY+ DDE QADLAYDF+VSALA+A +L  DDE  D  ++ + +SE E  
Sbjct: 121 NLSDQNESVIVLYSNDDEHQADLAYDFDVSALANASELNSDDEGGDESDDSEEDSESEVE 180

Query: 179 --NEGGSRKRRRVDLERGEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTNE 236
               GGSRKRRRV  E  +DP ++F+++KREYY MGTFHGKPSGCLMYDLSHSLRKNT E
Sbjct: 181 EDGSGGSRKRRRVSKENEDDPVRLFRKLKREYYHMGTFHGKPSGCLMYDLSHSLRKNTTE 240

Query: 237 LLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESA 296
           LLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNL+AV+ VTLKDGTKIRAPES+
Sbjct: 241 LLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLEAVSMVTLKDGTKIRAPESS 300

Query: 297 RIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQK 356
           RIAY+DEPRLMLL+EWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQK
Sbjct: 301 RIAYEDEPRLMLLREWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQK 360

Query: 357 FQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFV 416
           FQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSS+VSAADVVYGVTALLESFV
Sbjct: 361 FQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFV 420

Query: 417 TSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKF 476
           +SDGSCASKQFGVAYDALSLSNLD+LK+GMQQAIKVQR+ILRQGSAAI K G+IRSGRKF
Sbjct: 421 SSDGSCASKQFGVAYDALSLSNLDKLKAGMQQAIKVQRSILRQGSAAITKPGSIRSGRKF 480

Query: 477 RWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVCG 536
           RWVKLEDS DTK LGYPQALTKFCYF+MDAL+EKGAR KPL+CACL+QEPNK+LIVGVCG
Sbjct: 481 RWVKLEDSVDTKLLGYPQALTKFCYFVMDALREKGARAKPLLCACLSQEPNKMLIVGVCG 540

Query: 537 KPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL 591
           KPRLGA++GNAFG++FRNAA EIGAEFFHELFESSWI+LD+GAVNSFMV+LTEKL
Sbjct: 541 KPRLGAVQGNAFGIAFRNAAEEIGAEFFHELFESSWIVLDKGAVNSFMVKLTEKL 595

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446875|ref|XP_002283893.1| PREDICTED: cell division control protein 45 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|147853521|emb|CAN78533.1| hypothetical protein VITISV_006310 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443718|ref|XP_004139624.1| PREDICTED: cell division control protein 45 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526956|ref|XP_004170479.1| PREDICTED: LOW QUALITY PROTEIN: cell division control protein 45 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|15230255|ref|NP_189146.1| cell division control protein 45 [Arabidopsis thaliana] gi|9294166|dbj|BAB02068.1| CDC45 (cell division cycle 45) -like protein [Arabidopsis thaliana] gi|40641826|emb|CAD43725.1| putative cell division cyle protein 45 [Arabidopsis thaliana] gi|332643458|gb|AEE76979.1| cell division control protein 45 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831382|ref|XP_002883573.1| hypothetical protein ARALYDRAFT_480015 [Arabidopsis lyrata subsp. lyrata] gi|297329413|gb|EFH59832.1| hypothetical protein ARALYDRAFT_480015 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527358|ref|XP_003532278.1| PREDICTED: cell division control protein 45 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356567846|ref|XP_003552126.1| PREDICTED: protein TSD2-like [Glycine max] Back     alignment and taxonomy information
>gi|224133838|ref|XP_002321673.1| predicted protein [Populus trichocarpa] gi|222868669|gb|EEF05800.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
TAIR|locus:2090270596 CDC45 "AT3G25100" [Arabidopsis 1.0 0.991 0.748 3.2e-239
DICTYBASE|DDB_G0267748644 cdc45 "cell division cycle pro 0.541 0.496 0.351 1.2e-70
POMBASE|SPAC17D4.02638 cdc45 "DNA replication pre-ini 0.686 0.636 0.300 6.1e-64
UNIPROTKB|O75419566 CDC45 "Cell division control p 0.822 0.858 0.285 2.9e-58
UNIPROTKB|K7GSB7567 CDC45 "Uncharacterized protein 0.807 0.841 0.286 2.3e-56
UNIPROTKB|E2RLA4569 CDC45 "Uncharacterized protein 0.822 0.854 0.276 2.9e-56
UNIPROTKB|E1BYS7568 CDC45 "Uncharacterized protein 0.659 0.686 0.294 2.3e-54
UNIPROTKB|F1RK60598 CDC45 "Uncharacterized protein 0.627 0.620 0.302 5.4e-53
ZFIN|ZDB-GENE-040426-2710572 cdc45 "CDC45 cell division cyc 0.891 0.921 0.282 7.2e-52
RGD|1590928570 Cdc45 "cell division cycle 45" 0.903 0.936 0.289 1.1e-50
TAIR|locus:2090270 CDC45 "AT3G25100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2306 (816.8 bits), Expect = 3.2e-239, P = 3.2e-239
 Identities = 446/596 (74%), Positives = 509/596 (85%)

Query:     1 MVREKKLDSFYTRLRESATA-SSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYP 59
             MVR KK++SFY +LRESAT+ SS +PLLIFPSTSDVDSLCALK+I H+LESDS++Y+C+P
Sbjct:     1 MVRIKKVESFYAKLRESATSLSSQNPLLIFPSTSDVDSLCALKVITHILESDSIQYSCFP 60

Query:    60 VSSFQEIHKYAGP-NLGSSS-ETQ-ITILLINWGSHRDLKRVLNLGPKARVFVVDSHRPI 116
             VSSF EIHKYAGP  L S+S E+  +TILLINWG HRDLK VL LGP ARVFVVDSHRPI
Sbjct:    61 VSSFLEIHKYAGPAGLCSTSLESPPVTILLINWGCHRDLKLVLKLGPSARVFVVDSHRPI 120

Query:   117 HLHNLSDGNDNVVVLYTPDDEQQADLAYDFNVSALAH-AIDLGIXXXXXXXXXXXXXXXX 175
             HLHNLSD N+ VVVL+T DDE+Q DLAYDF+V  LA+ +  L +                
Sbjct:   121 HLHNLSDYNEQVVVLHTDDDERQGDLAYDFDVLKLANESFQLRVEDAGEESDEEEEDEEE 180

Query:   176 XXXXXXXXRKRRRVDLERGEDPEKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTN 235
                        R     +  D  KVFK++KR+YY+MGTFHGKPSGCL+++LSH LRKNTN
Sbjct:   181 DEEDDDDDDGDRPSKRRKMGDGVKVFKKLKRDYYKMGTFHGKPSGCLLFELSHMLRKNTN 240

Query:   236 ELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPES 295
             ELLWLACVSLTDQFVHERLTDERYQA VMELEQHINSSGN+D +TSVTLKDGTK+RAP+ 
Sbjct:   241 ELLWLACVSLTDQFVHERLTDERYQAAVMELEQHINSSGNIDKITSVTLKDGTKVRAPDC 300

Query:   296 ARIAYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQ 355
             +RI+Y++EPRLMLL+EW LFDSMLCSSYIATKLKTWSDNG+KKLKLLLARMGFAL++CQQ
Sbjct:   301 SRISYEEEPRLMLLREWTLFDSMLCSSYIATKLKTWSDNGIKKLKLLLARMGFALIECQQ 360

Query:   356 KFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESF 415
             KF YM+LEVKRKMK EF+RFLPEYGL DFYYRSFLRLHGYSSRVSAADVVYG+TALLESF
Sbjct:   361 KFPYMSLEVKRKMKQEFDRFLPEYGLNDFYYRSFLRLHGYSSRVSAADVVYGITALLESF 420

Query:   416 VTSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRK 475
             + S GS ASKQFG AYDALSL+NLD+L+SGMQQAIKVQRAILRQGSAAI KSG IRSGRK
Sbjct:   421 LGSGGSSASKQFGEAYDALSLNNLDKLRSGMQQAIKVQRAILRQGSAAITKSGCIRSGRK 480

Query:   476 FRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARMKPLVCACLAQEPNKVLIVGVC 535
             FRWVK+EDS D K+LGYPQALTKFCYFLMDAL+EKGARMKP++CAC +Q+P K+L+VGVC
Sbjct:   481 FRWVKIEDSMDAKYLGYPQALTKFCYFLMDALREKGARMKPMLCACASQQPGKILVVGVC 540

Query:   536 GKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEKL 591
             GKPRLGA+RGNAFG +FR AA E  A++FHELFESSWI+LD  AVNSFM+RLTEKL
Sbjct:   541 GKPRLGAVRGNAFGNAFRKAAQESRADYFHELFESSWIVLDASAVNSFMIRLTEKL 596
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0006270 "DNA replication initiation" evidence=IEA
GO:0006279 "premeiotic DNA replication" evidence=IMP
GO:0048229 "gametophyte development" evidence=IMP
GO:0006260 "DNA replication" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
DICTYBASE|DDB_G0267748 cdc45 "cell division cycle protein 45" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC17D4.02 cdc45 "DNA replication pre-initiation complex subunit Cdc45" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|O75419 CDC45 "Cell division control protein 45 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7GSB7 CDC45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLA4 CDC45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYS7 CDC45 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK60 CDC45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2710 cdc45 "CDC45 cell division cycle 45 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1590928 Cdc45 "cell division cycle 45" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018925001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (592 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00006228001
SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (739 aa)
   •••• 0.856
GSVIVG00003433001
SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (783 aa)
   •••• 0.856
GSVIVG00028109001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (718 aa)
   •••• 0.841
GSVIVG00035935001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (721 aa)
   •••• 0.834
GSVIVG00005616001
SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (732 aa)
   •••• 0.807
GSVIVG00014003001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (209 aa)
   •••• 0.751
GSVIVG00024137001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (490 aa)
   • •• 0.725
GSVIVG00019509001
RecName- Full=DNA polymerase; EC=2.7.7.7; (1495 aa)
   •••• 0.720
GSVIVG00017548001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (527 aa)
   •••• 0.695
GSVIVG00002439001
RecName- Full=DNA primase; EC=2.7.7.-; (457 aa)
   • •• 0.685

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
pfam02724583 pfam02724, CDC45, CDC45-like protein 1e-142
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information 
 Score =  425 bits (1094), Expect = e-142
 Identities = 204/596 (34%), Positives = 323/596 (54%), Gaps = 49/596 (8%)

Query: 25  PLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQI-T 83
            +L+     DVD+LCA KI+  +L+ D ++Y   PVS + E+            +  I +
Sbjct: 1   SVLVL-VALDVDALCACKILTSLLKCDLIQYQLVPVSGYGELK-----RAYQELDEDIKS 54

Query: 84  ILLINWGSHRDLKRVLNLGPKARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQADLA 143
           ++LIN G   DL+  L L     V+V+DSHRP +L N+  G+D VV+    D E++    
Sbjct: 55  VILINCGGMVDLEEFLQLDEDVIVYVIDSHRPWNLDNV-FGSDQVVIFDDGDIEEELQDE 113

Query: 144 YDFNVSALAHAIDLGIDDEDSDSDEEDDSESEGEENEGGSRKRRRVDLERGEDPEKVFKR 203
             ++ +      D   DD+D +SDEED+  S+ E++E         D+   E   +  +R
Sbjct: 114 PRYDDAYRDLEED---DDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRR 170

Query: 204 MK---------REYYRMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERL 254
            +           YY  GT++G  S   +Y+L+  L K+ N+LLWLA V LT  ++H ++
Sbjct: 171 RREWEEKRAELEFYYYQGTYYGTSSALTVYELASELGKDNNDLLWLAIVGLTSLYLHGKI 230

Query: 255 TDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQEWNL 314
             ERY+  V  L+  ++         ++  +D T  ++P+   I+++ E RL LL+ W+L
Sbjct: 231 DPERYETLVELLQDEVSRLNP----RNINGEDPTNTKSPDDMSISFEPELRLFLLRHWSL 286

Query: 315 FDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFER 374
           +DSML SSY+A+KLK W++ G K+L  LLA+MG  L   +QK+ +M++++KR++++  E+
Sbjct: 287 YDSMLYSSYVASKLKLWTERGRKRLHKLLAKMGIPLKQAKQKYNHMDMDLKRELRELLEK 346

Query: 375 FLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVTSDGSCASK--------- 425
           + P+YGL D  ++SF+R +GY  ++SA+DVV  VTALLE    S    +           
Sbjct: 347 YAPKYGLDDIVFQSFVRTYGYRGKLSASDVVEAVTALLEVGSKSPAGASDTEEEDIELLK 406

Query: 426 ---------QFGVAYDALSLSNLDQLKSGMQQAIKVQRAILRQGSAAIMKSGAIRSGRKF 476
                     F  AYDALS  N D L +G++ A K+QRAI R GS ++++   I+S   F
Sbjct: 407 EKEDESWLSNFWRAYDALSRKNSDLLHAGLELAKKLQRAIFRTGS-SLLEKRQIKSLGPF 465

Query: 477 RWVKLEDSADTKFLGYPQALTKFCYFLMDAL----KEKGARMKPLVCACLAQEPNKVLIV 532
           R+  L+D  D K   +P ALTK   +L++AL    K + A + PLV A L +E    L+V
Sbjct: 466 RYCVLKDGPDLKLFSHPLALTKLALWLLEALAESEKRRRASLLPLVLAALDEEKGTYLVV 525

Query: 533 GVCGKPRLGALRGNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLT 588
           GV   P       N FG +F+ AA E  A    + FE+S I + +  ++ F+  LT
Sbjct: 526 GV--SPSTEDSDKNFFGRAFQQAAEETNARVRIDSFETSVIEVRKEDLSKFLEALT 579

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 591
PF02724622 CDC45: CDC45-like protein; InterPro: IPR003874 CDC 100.0
KOG2475587 consensus CDC45 (cell division cycle 45)-like prot 100.0
TIGR00644539 recJ single-stranded-DNA-specific exonuclease RecJ 97.72
COG0608491 RecJ Single-stranded DNA-specific exonuclease [DNA 96.71
PF01368145 DHH: DHH family; InterPro: IPR001667 This is a dom 96.64
PRK11070575 ssDNA exonuclease RecJ; Provisional 94.26
PF09026101 CENP-B_dimeris: Centromere protein B dimerisation 84.18
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46 Back     alignment and domain information 
Probab=100.00  E-value=5.2e-163  Score=1367.50  Aligned_cols=560  Identities=39%  Similarity=0.654  Sum_probs=481.5

Q ss_pred             CEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecCChHHHHHhhccccCCCCCCccEEEEEecccccchHHhhCCCCC
Q 007744           25 PLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVSSFQEIHKYAGPNLGSSSETQITILLINWGSHRDLKRVLNLGPK  104 (591)
Q Consensus        25 ~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~gy~eL~~~~~e~~~~~~~~~~~vilINcGg~vDl~~~l~~~~~  104 (591)
                      ||+|+| |+|||||||||||+.|||+|+|+|+|+||+||+||+++++++    ++++++||||||||++||.+||+++++
T Consensus         1 ~Vli~v-~~dvDalcA~kiL~~Llk~d~I~~~l~PV~gy~el~~~~~~~----~~~~~~vilIncGa~~dl~~~l~~~~~   75 (622)
T PF02724_consen    1 SVLILV-ALDVDALCACKILTSLLKSDNIQYSLVPVSGYSELERAYEEL----DEDIKSVILINCGATVDLEEFLELDED   75 (622)
T ss_pred             CEEEEE-cCChHHHHHHHHHHHHHHhcCCCeeEEEeCCHHHHHHHHHHH----hhhhceEEEEecCchhhHHHHhCCCCc
Confidence            699999 599999999999999999999999999999999999999999    789999999999999999999999999


Q ss_pred             cEEEEEcCCCCCccCCCcCCCCcEEEEecCCchhh--hhccccchhHhhhhcccCCC-------CCCCC--CCCCCC---
Q 007744          105 ARVFVVDSHRPIHLHNLSDGNDNVVVLYTPDDEQQ--ADLAYDFNVSALAHAIDLGI-------DDEDS--DSDEED---  170 (591)
Q Consensus       105 ~~iyViDSHRP~~L~Nv~~~~~~v~i~~~~dd~~~--~~~~y~~~~~~~~~~~~~~~-------ede~~--d~d~d~---  170 (591)
                      ++||||||||||||+|||+.+++|+||.+.+++.+  ..+.|..-..++.++++.++       |+|+|  ++++++   
T Consensus        76 ~~iyViDshRP~~L~Nv~~~~~~v~v~ddg~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~D~e~d~~~e~~~~~~~  155 (622)
T PF02724_consen   76 VTIYVIDSHRPWNLDNVFSDNDQVIVFDDGDIEEELQEEPEYRDAYEALEEMPEEEDDEDDEDSDDEDDEEDEESDSSDE  155 (622)
T ss_pred             eEEEEEeCCCCccHhhccCCCCcEEEEECCChhhhcchhhhhHHHHHHhhhccccccccccccCcccccccccccccccc
Confidence            99999999999999999995589999933222221  11111100023322222211       11100  000000   


Q ss_pred             -------CCCccccccCCCccccccccc--cC---CCCh---HHHHHHHHHHHhhcCcccccchHHHHHHHHHHhcccCc
Q 007744          171 -------DSESEGEENEGGSRKRRRVDL--ER---GEDP---EKVFKRMKREYYRMGTFHGKPSGCLMYDLSHSLRKNTN  235 (591)
Q Consensus       171 -------~ed~d~~d~~~~~~kr~r~~~--~~---~~~~---~~~~~~~~~~yY~~gs~~g~s~s~~~y~La~~l~r~~~  235 (591)
                             +++++++++++.+++|+|+..  ..   .+++   +++.++.+..||++|||||+|+|++||+|||+|+|+++
T Consensus       156 ~~~~~d~d~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~r~~~~~~~~~i~~yY~~gs~~g~ssa~~~y~La~~l~r~~~  235 (622)
T PF02724_consen  156 RDSWSDEDEDDDEDDEDEDERSRKRSNSSDSSKKLRRRRRREREEYREEIEKYYSQGSYYGKSSAVLMYELASSLGRDDN  235 (622)
T ss_pred             cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhcCceecccHHHHHHHHHHHhCCCch
Confidence                   000010112223444444322  10   1111   33455567789999999999999999999999999999


Q ss_pred             chhHHHHHhhchHHhhhccchHHHHHHHHHHHHHhhhcCCCCccccccccCCccccCCCcceeecCCCcchhhhhcchhh
Q 007744          236 ELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLDAVTSVTLKDGTKIRAPESARIAYDDEPRLMLLQEWNLF  315 (591)
Q Consensus       236 d~LW~AIvGlT~q~i~~rI~~~~Y~~~~~~L~~~v~r~~~~~~~~~~~~~~~~~~~~~d~~~I~~~~e~rl~LlRHWsLy  315 (591)
                      |+|||||||+|+||+++||++++|.+.+..|++||+|+++.++.++....+.+..+++|+++|++++|||||||||||||
T Consensus       236 d~LW~AIvGlT~q~i~~~i~~~~Y~~~~~~L~~eV~rl~~~~~~~~~~~~~~~~~~s~d~~~I~~~~e~rl~LlRHWSLy  315 (622)
T PF02724_consen  236 DLLWLAIVGLTDQYIHERISSERYDRYVPLLQDEVSRLNPSNDSNSVSSEDPTSARSPDDMSIRFEEELRLMLLRHWSLY  315 (622)
T ss_pred             HHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccccccccccccccccCCCCceeeeccccceeeeccCcHH
Confidence            99999999999999999999999999999999999999887655555555667888999999999999999999999999


Q ss_pred             hhhhcCccchhcccccccchHHHHHHHHHHhCCchhhhhcccccCcHHHHHHHHHHHHhhccccCCCCcccceEEEEecc
Q 007744          316 DSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRLHGY  395 (591)
Q Consensus       316 dSm~~S~yvaskL~lW~~~G~krL~~lLA~MGisL~~~kQ~y~~Md~~~k~~L~~~l~~~a~~ygL~dl~~~sF~r~~Gy  395 (591)
                      |||+||+||||||+|||++|+||||+|||+|||||+||||+|.|||+++|++|+++|+++||+|||++++|+||+|+|||
T Consensus       316 dSm~~S~yvaskL~lWt~~G~krL~~lLAkMGisL~~~~Q~y~~Md~~~K~~L~~~l~~~a~~ygL~dl~~~sF~r~~Gy  395 (622)
T PF02724_consen  316 DSMYHSSYVASKLKLWTEKGRKRLHKLLAKMGISLKQAQQKYSYMDMELKRELREKLEKYAPKYGLDDLVFPSFVRTYGY  395 (622)
T ss_pred             HHHhhchhhHhhcchhhhhhHHHHHHHHHHhCCcHHHHcCCchhCCHHHHHHHHHHHHHHHHhcCCCCceeeeEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhHHHHHHhhhhccc-------------------------cCCCccccccHHHHHHhccCCChHHHHHHHHHHH
Q 007744          396 SSRVSAADVVYGVTALLESFV-------------------------TSDGSCASKQFGVAYDALSLSNLDQLKSGMQQAI  450 (591)
Q Consensus       396 ~~~lSA~D~v~al~ALLe~~~-------------------------~~~~~~~~~nF~~A~DaL~~~~~~~L~~gi~~Ak  450 (591)
                      +++|||+||||||+||||+++                         ..++++|++|||.|||||++.|++.|++||++||
T Consensus       396 ~~~lSA~D~v~al~ALLE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nF~~A~DaL~~~~~~~l~~gi~~Ak  475 (622)
T PF02724_consen  396 RGKLSASDVVYALTALLEVGKSSSNVNNASNPENDSDEEEDNEEDEEKEEESWVDNFWRAYDALSRSNIDLLKKGIELAK  475 (622)
T ss_pred             CCceeHHHHHHHHHHHhcCCccccccccccCcccccccchhhhhhcccccccHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            999999999999999999872                         1135789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCceeecCceEEEEeCCCCCcccccChHHHHHHHHHHHHHHHHhCCCC-----CceEEEeecCC
Q 007744          451 KVQRAILRQGSAAIMKSGAIRSGRKFRWVKLEDSADTKFLGYPQALTKFCYFLMDALKEKGARM-----KPLVCACLAQE  525 (591)
Q Consensus       451 ~lq~ai~r~g~~~i~~~~~I~~~~~fr~~~l~e~~d~~~F~~P~~L~~La~fLl~a~~~~~~~~-----~PlVla~~~~~  525 (591)
                      .+||||++||+++|+ +++|+++|+||||+|+||||+++|+||++|++||+||++|+++++++.     +||||||++++
T Consensus       476 ~lq~ai~~~~~slie-~~~I~~~~~fr~~~l~dg~d~~~F~~P~~L~~La~~L~~a~~~~~~~~~~~~~~PlVla~l~~~  554 (622)
T PF02724_consen  476 SLQRAIFRTGSSLIE-KKQIKSLGPFRYCVLKDGPDLELFSHPLALTKLALFLLDALRESSKKRRAKRSLPLVLAALDEE  554 (622)
T ss_pred             HHHHHHHHHHHHHhc-cCccccCCCeEEEEeCCchhHHHhCCHHHHHHHHHHHHHHHHHhccccccccccceeEEeecCC
Confidence            999999999999995 679999999999999999999999999999999999999998876433     99999999999


Q ss_pred             CCeEEEEeccCCCCCCCCC-CChhhHHHHHHHHHhCCcccccCccceeEEEeccchhHHHHHHHhc
Q 007744          526 PNKVLIVGVCGKPRLGALR-GNAFGVSFRNAATEIGAEFFHELFESSWIILDRGAVNSFMVRLTEK  590 (591)
Q Consensus       526 ~~~~lVvGv~~~~~~~~~~-~N~Fg~aF~~aa~~~~a~~~~D~Fdssviei~~eDl~~Fle~L~~~  590 (591)
                      +|+||||||+++|..|+.. +|+||+||++||++|||+++||+||||||||+++|+++|+|+|+.+
T Consensus       555 ~~~~lVvGv~~~p~~~~~~~~N~Fg~aF~~aa~~~~a~~~~d~Fdssviei~~eDl~~Fle~L~~~  620 (622)
T PF02724_consen  555 RGTYLVVGVSAPPISGDSDGKNFFGRAFQQAAEETGARVRHDSFDSSVIEIKKEDLSKFLEALTLS  620 (622)
T ss_pred             CCeEEEEEeccCCcccccccccHHHHHHHHHHHHhCCeEecccccceEEEEeHHHHHHHHHHHHhh
Confidence            9999999998889888877 9999999999999999999999999999999999999999999975

Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair] Back     alignment and domain information
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ Back     alignment and domain information
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease [] Back     alignment and domain information
>PRK11070 ssDNA exonuclease RecJ; Provisional Back     alignment and domain information
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
2zxr_A666 Single-stranded DNA specific exonuclease RECJ; DNA 92.43
1wpn_A188 Manganese-dependent inorganic pyrophosphatase; met 91.02
3dma_A343 Exopolyphosphatase-related protein; structural gen 90.93
3dev_A320 SH1221; alpha-beta protein., structural genomics, 88.4
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A Back     alignment and structure
Probab=92.43  E-value=0.24  Score=56.18  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEe----cCChHHHHHhhccccCCCCCCc
Q 007744            6 KLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYP----VSSFQEIHKYAGPNLGSSSETQ   81 (591)
Q Consensus         6 ~~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~P----V~gy~eL~~~~~e~~~~~~~~~   81 (591)
                      ....+.+.|.+.-.+  +.+|+|+- -.|+|++||+-+|...|+.-+....++-    -.||.=.....++.    .+..
T Consensus        57 dm~~Av~~i~~aI~~--~ekI~I~G-H~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r~~egygl~~~~I~~~----~~~~  129 (666)
T 2zxr_A           57 GLREAAALLEEALRQ--GKRIRVHG-DYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEH----LEAS  129 (666)
T ss_dssp             THHHHHHHHHHHHHT--TCEEEEEC-CSSHHHHHHHHHHHHHHHHTTCEEEECCC------------------------C
T ss_pred             hHHHHHHHHHHHHHc--CCeEEEEe-ccCCchHHHHHHHHHHHHHcCCcEEEecCCCCCccccCCHHHHHhh----ccCC
Confidence            345566677654433  46899997 5899999999999999988776544331    13444333333433    1346


Q ss_pred             cEEEEEecccccchHHhhCC-CCCcEEEEEcCCCCCc
Q 007744           82 ITILLINWGSHRDLKRVLNL-GPKARVFVVDSHRPIH  117 (591)
Q Consensus        82 ~~vilINcGg~vDl~~~l~~-~~~~~iyViDSHRP~~  117 (591)
                      ..+|.+-||-. +...+-.. ..++.+.|+|-|+|=.
T Consensus       130 ~LIItVD~G~~-s~~~i~~a~~~g~~VIViDHH~~~~  165 (666)
T 2zxr_A          130 DLFLTVDCGIT-NHAELRELLENGVEVIVTDHHTPGK  165 (666)
T ss_dssp             CEEEESCCC---------------CEEEEECCCC---
T ss_pred             CEEEEEcCCch-hhhhHHHHHhCCCCEEEECCcCCCC
Confidence            78999999854 22222111 2467899999999854
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1 Back     alignment and structure
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis} Back     alignment and structure
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
d1ir6a_385 Exonuclease RecJ {Thermus thermophilus [TaxId: 274 95.96
d1wpna_187 Manganese-dependent inorganic pyrophosphatase (fam 94.5
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Exonuclease RecJ
domain: Exonuclease RecJ
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.0074  Score=61.53  Aligned_cols=104  Identities=18%  Similarity=0.196  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHhhhccCCCCCEEEEecCCChhHHHHHHHHHHhHhcCCcceeEEecC----ChHHHHHhhccccCCCCCCc
Q 007744            6 KLDSFYTRLRESATASSDSPLLIFPSTSDVDSLCALKIILHVLESDSVRYACYPVS----SFQEIHKYAGPNLGSSSETQ   81 (591)
Q Consensus         6 ~~~~~Y~~I~~~~~~~~~~~VlI~Vs~~DvDAlCA~rIL~~Llk~D~I~y~l~PV~----gy~eL~~~~~e~~~~~~~~~   81 (591)
                      ...++-+.|++.-..  +.+|+|+- -+|||.+|++-||...|++-++.++.+-..    ||.=-.+..+++.    +..
T Consensus         9 ~m~~A~~~i~~ai~~--~e~I~I~g-DyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~----~~~   81 (385)
T d1ir6a_           9 GLREAAALLEEALRQ--GKRIRVHG-DYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHL----EAS   81 (385)
T ss_dssp             THHHHHHHHHHHHHT--TCEEEEEC-CSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHH----TTC
T ss_pred             CHHHHHHHHHHHHHC--CCEEEEEe-CCCcchHHHHHHHHHHHHHCCCCeEEECCCccccCCCcCHHHHHHHh----hcC
Confidence            456677777755433  56899996 599999999999999999999988876433    3331223333332    234


Q ss_pred             cEEEEEecc-cccchHHhhCCCCCcEEEEEcCCCCCc
Q 007744           82 ITILLINWG-SHRDLKRVLNLGPKARVFVVDSHRPIH  117 (591)
Q Consensus        82 ~~vilINcG-g~vDl~~~l~~~~~~~iyViDSHRP~~  117 (591)
                      ..||.+-|| +..+..+.+. ..++.+.|+|-|.|-.
T Consensus        82 ~LiItvD~G~~~~e~i~~~~-~~gi~vIv~DHH~~~~  117 (385)
T d1ir6a_          82 DLFLTVDCGITNHAELRELL-ENGVEVIVTDHHTPGK  117 (385)
T ss_dssp             SEEEESSCCTTCGGGHHHHT-TSCCEEEEECCSCCCS
T ss_pred             CeEEEecccccchhhHhhHh-hcCCceeccccccccc
Confidence            799999999 4455555443 3488999999999954
>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure