Citrus Sinensis ID: 007761

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH
cccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccEEEEccccccccccccHHHcHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEcccccccEEEEEEEEcccccEEEEEcccccccccccEEEEcccccccccccccEEEccccccccccEEcccccccccccccEEccccccccHHHHHHHccccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEccccHHHHHHHHHcccccHHHHHHHcccccccEEEccccccEEEEcccHHHHHHHHHccccccccEEcccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccc
ccEEcccccccccHHcccccccHHHHHHccccccccHHcccHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccEEEccEEEEcccccccEEccEEEEEEcccccEEEEEEEEcccccEEEEEEccccccccccEEEEccccHHHHHHcccEEEEEEEcccEcEEEEcccccccccccEEEEcccccccccHHcccccccEEEEEcccccEcccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEcccccEEEEccHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEEcccHHHHHHHccccccccEEEEcccHHHHHHHccccccccccccccccHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccc
milqmspfisgptllssyrlnpllfskrqrcmklphwhfnrtKQRFFAVAAaennkdtlpktfdftseERIYNWWesqgyfkpnfergsdpfvismpppnvtgslhmghAMFVTLEDIMVRYHRmkgrptlwlpgtdhagIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLgascdwtrerftLDEQLSRAVVEAFIRLHEKGLiyqgsymvnwspnlQTAVSDLEveyseepgtlYYIKYRVAgrsdfltiattrpetlfgdvalavnpqdehysqFIGMMAIvpmtygrhvpiisdkyvdkefgtgvlkispghdhndYLLARKlglpilnvmnkdgtlnEVAGLFRGLDRFEARKKLWSDLEETglavkkephtlrvprsqrggevieplvskqwfvTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQlwwghripvwyivgkeEEYIVARNADEALEKAHQKYGknveiyqdpdvldtwfssalwpfstlgwpdvsaddfkkfypttmletgHDILFFWVARMVMMGIEftgsvpfshvylhglirdsqvKKCQKH
milqmspfisgptllsSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAaaennkdtlpktfdftsEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAegikrvelsrdeftKRVWEwkekyggtitsqikrlgascDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEetglavkkephtlrvprsqrggeviEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGlirdsqvkkcqkh
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH
*******FISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAV***************GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD*********
********ISGPTLLSSYRLNPLLFSKRQRC*********************************FTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKK****
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH
*ILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVA******DTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query590 2.2.26 [Sep-21-2011]
Q83DD0 920 Valine--tRNA ligase OS=Co yes no 0.886 0.568 0.557 1e-174
Q7TUI9 929 Valine--tRNA ligase OS=Pr yes no 0.901 0.572 0.525 1e-172
Q46IA7 933 Valine--tRNA ligase OS=Pr yes no 0.898 0.568 0.540 1e-172
Q8YX97 1014 Valine--tRNA ligase OS=No yes no 0.896 0.521 0.529 1e-172
Q5N3J4 909 Valine--tRNA ligase OS=Sy yes no 0.884 0.574 0.526 1e-172
Q7UZI3 918 Valine--tRNA ligase OS=Pr yes no 0.906 0.582 0.521 1e-170
Q97GG8 881 Valine--tRNA ligase OS=Cl yes no 0.889 0.595 0.524 1e-170
Q7U3N4 914 Valine--tRNA ligase OS=Sy yes no 0.898 0.579 0.541 1e-169
Q8RBN5 879 Valine--tRNA ligase OS=Th yes no 0.877 0.589 0.521 1e-169
Q3AF87 878 Valine--tRNA ligase OS=Ca yes no 0.886 0.595 0.544 1e-169
>sp|Q83DD0|SYV_COXBU Valine--tRNA ligase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=valS PE=3 SV=1 Back     alignment and function desciption
 Score =  610 bits (1574), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/533 (55%), Positives = 388/533 (72%), Gaps = 10/533 (1%)

Query: 59  LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
           + KT+D  + E++  ++WE +   KP  +    P+ I +PPPNVTG+LHMGH    TL D
Sbjct: 1   MEKTYDPKAIEKKWADYWEKRQLSKPTAQ--GSPYCIMLPPPNVTGTLHMGHGFQQTLMD 58

Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
            ++RYHRMKG  TLW  GTDHAGIATQ+VVE+ LA E + R +L R  F KRVWEW+E+ 
Sbjct: 59  TLIRYHRMKGERTLWQGGTDHAGIATQMVVEQQLAQEDLTREDLGRQAFIKRVWEWRERS 118

Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
           GG IT Q++RLG S DW+RERF++DE LSRA  EAFIRLH +GLIY+G  +VNW P L T
Sbjct: 119 GGKITHQMRRLGVSIDWSRERFSMDEGLSRATTEAFIRLHHEGLIYRGKRLVNWDPKLNT 178

Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
           A+SDLEV   E  G L++I+Y +A  S  L IATTRPETL GDVA+AV+PQDE Y  F+G
Sbjct: 179 AISDLEVVTEEVEGHLWHIRYPLAEGSGHLIIATTRPETLLGDVAIAVHPQDERYQPFVG 238

Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
               +P+T  R +P+I+D+ VDKEFGTG LKI+PGHD NDY + ++  LP++N++  +G 
Sbjct: 239 KKVRLPLT-DRTIPVIADEAVDKEFGTGSLKITPGHDFNDYEIGQRHQLPLINILTSEGY 297

Query: 358 LNE-VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
           LNE V   +RGL+RFEARKK+ +DL+   L  K EP+ + VPR +R G +IEPL++ QWF
Sbjct: 298 LNENVPEPYRGLERFEARKKIIADLQRENLLEKTEPYRVPVPRGERSGVIIEPLLTDQWF 357

Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
           + ME LA+ A+ AVE GEL  +P+ +EK Y  WLSNI+DWCISRQLWWGHR+PVWY   +
Sbjct: 358 IKMEALAKPAMEAVESGELKFIPKNWEKTYLQWLSNIQDWCISRQLWWGHRLPVWY--DE 415

Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
           E+   V R+ +E L+K H     +V++ Q+ DVLDTWFS++LWPF+TLGWP+   + FK 
Sbjct: 416 EKNSYVGRSREEILKKYH--LSPDVKLQQETDVLDTWFSASLWPFATLGWPE-KTESFKT 472

Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQK 589
           FYPT +L TG DI+FFWVARMVMMG++ T  +PF  VY+HGLIRDSQ +K  K
Sbjct: 473 FYPTQVLVTGFDIIFFWVARMVMMGLKLTHKIPFHSVYIHGLIRDSQGRKMSK 525
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 9
>sp|Q7TUI9|SYV_PROMM Valine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=valS PE=3 SV=2 Back     alignment and function description
>sp|Q46IA7|SYV_PROMT Valine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q5N3J4|SYV_SYNP6 Valine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q7UZI3|SYV_PROMP Valine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q97GG8|SYV_CLOAB Valine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q7U3N4|SYV_SYNPX Valine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q8RBN5|SYV_THETN Valine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q3AF87|SYV_CARHZ Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=valS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
359487063 959 PREDICTED: valyl-tRNA synthetase-like [V 0.977 0.601 0.871 0.0
296085363 963 unnamed protein product [Vitis vinifera] 0.977 0.599 0.869 0.0
359488299 958 PREDICTED: valyl-tRNA synthetase-like [V 0.977 0.602 0.869 0.0
255580737 694 valyl-tRNA synthetase, putative [Ricinus 0.994 0.845 0.856 0.0
224065184 951 predicted protein [Populus trichocarpa] 0.920 0.570 0.894 0.0
356563701 971 PREDICTED: valyl-tRNA synthetase-like [G 0.966 0.587 0.838 0.0
449456259 923 PREDICTED: valine--tRNA ligase-like [Cuc 0.920 0.588 0.867 0.0
334187718 974 valyl-tRNA synthetase [Arabidopsis thali 0.928 0.562 0.851 0.0
218199135 958 hypothetical protein OsI_25003 [Oryza sa 0.961 0.591 0.816 0.0
222636480 960 hypothetical protein OsJ_23192 [Oryza sa 0.961 0.590 0.812 0.0
>gi|359487063|ref|XP_002270806.2| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1064 bits (2751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/590 (87%), Positives = 549/590 (93%), Gaps = 13/590 (2%)

Query: 10  SGPTLLSS---YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KTF 63
           S P+LLSS   YRLNPLLFS R   ++L H H    K RFFAVAA EN+  T P   K+F
Sbjct: 4   STPSLLSSCSAYRLNPLLFSHRCLRIRLSHSHL---KPRFFAVAARENDVFTSPETAKSF 60

Query: 64  DFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123
           DFTSEERIYNWW+SQGYFKPN +RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH
Sbjct: 61  DFTSEERIYNWWDSQGYFKPNLDRGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 120

Query: 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITS 183
           RMKGRPTLW+PGTDHAGIATQLVVE+MLA+EGIKR ELSRDEFTKRVWEWKEKYGGTIT+
Sbjct: 121 RMKGRPTLWIPGTDHAGIATQLVVERMLASEGIKRAELSRDEFTKRVWEWKEKYGGTITN 180

Query: 184 QIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 243
           QIKRLGASCDWTRE FTLDE+LS AV+EAF+RLHE+GLIYQGSYMVNWSPNLQTAVSDLE
Sbjct: 181 QIKRLGASCDWTREHFTLDEKLSWAVIEAFVRLHERGLIYQGSYMVNWSPNLQTAVSDLE 240

Query: 244 VEYSEEPGTLYYIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
           VEYSEEPGTLYYIKYRVAG  +SD+LTIATTRPETLFGD A+AV+PQD+ YS++IG MAI
Sbjct: 241 VEYSEEPGTLYYIKYRVAGGSKSDYLTIATTRPETLFGDTAIAVHPQDDRYSRYIGRMAI 300

Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
           VPMT+GRHVPIISD+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTFGRHVPIISDRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360

Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
           AGL+RGLDRFEARKKLW DLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLYRGLDRFEARKKLWLDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 420

Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
           LAEKAL AVE+GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK  EEE
Sbjct: 421 LAEKALQAVERGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEE 480

Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
           YIVARNA+EALEKA +KYGK+VEIYQ+PDVLDTWFSSALWPFSTLGWPDVS  DFKKFYP
Sbjct: 481 YIVARNANEALEKAQEKYGKDVEIYQEPDVLDTWFSSALWPFSTLGWPDVSTQDFKKFYP 540

Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQK 589
           TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQ +K  K
Sbjct: 541 TTVLETGHDILFFWVARMVMMGIEFTGAVPFSYVYLHGLIRDSQGRKMSK 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085363|emb|CBI29095.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488299|ref|XP_003633739.1| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580737|ref|XP_002531190.1| valyl-tRNA synthetase, putative [Ricinus communis] gi|223529231|gb|EEF31205.1| valyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224065184|ref|XP_002301705.1| predicted protein [Populus trichocarpa] gi|222843431|gb|EEE80978.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563701|ref|XP_003550098.1| PREDICTED: valyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|449456259|ref|XP_004145867.1| PREDICTED: valine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334187718|ref|NP_568337.4| valyl-tRNA synthetase [Arabidopsis thaliana] gi|332004946|gb|AED92329.1| valyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218199135|gb|EEC81562.1| hypothetical protein OsI_25003 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222636480|gb|EEE66612.1| hypothetical protein OsJ_23192 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
TIGR_CMR|CBU_0808 920 CBU_0808 "valyl-tRNA synthetas 0.886 0.568 0.560 1.2e-163
TIGR_CMR|CHY_0334 878 CHY_0334 "valyl-tRNA synthetas 0.883 0.593 0.547 1.8e-158
TIGR_CMR|GSU_2045 887 GSU_2045 "valyl-tRNA synthetas 0.886 0.589 0.519 7.6e-151
TIGR_CMR|BA_4690 881 BA_4690 "valyl-tRNA synthetase 0.888 0.594 0.510 1.2e-150
TIGR_CMR|DET_0430 880 DET_0430 "valyl-tRNA synthetas 0.867 0.581 0.525 5.4e-150
TIGR_CMR|SO_3424 958 SO_3424 "valyl-tRNA synthetase 0.513 0.316 0.516 2.9e-146
UNIPROTKB|P07118 951 valS "valyl-tRNA synthetase" [ 0.518 0.321 0.507 9.8e-146
UNIPROTKB|Q9KP73 953 valS "Valine--tRNA ligase" [Vi 0.518 0.321 0.488 8.9e-143
TIGR_CMR|VC_2503 953 VC_2503 "valyl-tRNA synthetase 0.518 0.321 0.488 8.9e-143
TIGR_CMR|CPS_0738 973 CPS_0738 "valyl-tRNA synthetas 0.515 0.312 0.479 5e-140
TIGR_CMR|CBU_0808 CBU_0808 "valyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
 Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
 Identities = 299/533 (56%), Positives = 390/533 (73%)

Query:    59 LPKTFDFTSEERIY-NWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
             + KT+D  + E+ + ++WE +   KP  + GS P+ I +PPPNVTG+LHMGH    TL D
Sbjct:     1 MEKTYDPKAIEKKWADYWEKRQLSKPTAQ-GS-PYCIMLPPPNVTGTLHMGHGFQQTLMD 58

Query:   118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
              ++RYHRMKG  TLW  GTDHAGIATQ+VVE+ LA E + R +L R  F KRVWEW+E+ 
Sbjct:    59 TLIRYHRMKGERTLWQGGTDHAGIATQMVVEQQLAQEDLTREDLGRQAFIKRVWEWRERS 118

Query:   178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
             GG IT Q++RLG S DW+RERF++DE LSRA  EAFIRLH +GLIY+G  +VNW P L T
Sbjct:   119 GGKITHQMRRLGVSIDWSRERFSMDEGLSRATTEAFIRLHHEGLIYRGKRLVNWDPKLNT 178

Query:   238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
             A+SDLEV   E  G L++I+Y +A  S  L IATTRPETL GDVA+AV+PQDE Y  F+G
Sbjct:   179 AISDLEVVTEEVEGHLWHIRYPLAEGSGHLIIATTRPETLLGDVAIAVHPQDERYQPFVG 238

Query:   298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
                 +P+T  R +P+I+D+ VDKEFGTG LKI+PGHD NDY + ++  LP++N++  +G 
Sbjct:   239 KKVRLPLT-DRTIPVIADEAVDKEFGTGSLKITPGHDFNDYEIGQRHQLPLINILTSEGY 297

Query:   358 LNE-VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
             LNE V   +RGL+RFEARKK+ +DL+   L  K EP+ + VPR +R G +IEPL++ QWF
Sbjct:   298 LNENVPEPYRGLERFEARKKIIADLQRENLLEKTEPYRVPVPRGERSGVIIEPLLTDQWF 357

Query:   417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
             + ME LA+ A+ AVE GEL  +P+ +EK Y  WLSNI+DWCISRQLWWGHR+PVWY   +
Sbjct:   358 IKMEALAKPAMEAVESGELKFIPKNWEKTYLQWLSNIQDWCISRQLWWGHRLPVWY--DE 415

Query:   477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
             E+   V R+ +E L+K H     +V++ Q+ DVLDTWFS++LWPF+TLGWP+   + FK 
Sbjct:   416 EKNSYVGRSREEILKKYH--LSPDVKLQQETDVLDTWFSASLWPFATLGWPE-KTESFKT 472

Query:   537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQK 589
             FYPT +L TG DI+FFWVARMVMMG++ T  +PF  VY+HGLIRDSQ +K  K
Sbjct:   473 FYPTQVLVTGFDIIFFWVARMVMMGLKLTHKIPFHSVYIHGLIRDSQGRKMSK 525
GO:0004832 "valine-tRNA ligase activity" evidence=ISS
GO:0006438 "valyl-tRNA aminoacylation" evidence=ISS
TIGR_CMR|CHY_0334 CHY_0334 "valyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2045 GSU_2045 "valyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4690 BA_4690 "valyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0430 DET_0430 "valyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3424 SO_3424 "valyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P07118 valS "valyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP73 valS "Valine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2503 VC_2503 "valyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0738 CPS_0738 "valyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.90.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II002297
aminoacyl-tRNA ligase (EC-6.1.1.9) (951 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VII.52.1
branched-chain amino acid aminotransferase (EC-2.6.1.42) (338 aa)
     •• 0.919
estExt_Genewise1_v1.C_LG_II1818
hypothetical protein (319 aa)
     •• 0.915
fgenesh4_pm.C_LG_IX000386
hypothetical protein (339 aa)
     •• 0.914
gw1.1161.2.1
hypothetical protein (342 aa)
     •• 0.911
eugene3.00180323
aminodeoxychorismate lyase (EC-4.1.3.38) (295 aa)
     •• 0.910
estExt_fgenesh4_pm.C_LG_XI0275
aminodeoxychorismate lyase (EC-4.1.3.38) (339 aa)
     •  0.899
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
   •  • 0.799
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
•     • 0.783
eugene3.114390001
Predicted protein (351 aa)
      • 0.756
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
•  •  • 0.748

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
PLN02943 958 PLN02943, PLN02943, aminoacyl-tRNA ligase 0.0
PRK05729 874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 0.0
COG0525 877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 0.0
TIGR00422 861 TIGR00422, valS, valyl-tRNA synthetase 0.0
PTZ00419 995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 0.0
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 0.0
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 0.0
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 0.0
PRK13208 800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 1e-131
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 4e-93
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 6e-87
TIGR00392 861 TIGR00392, ileS, isoleucyl-tRNA synthetase 2e-69
COG0060 933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 2e-67
PRK06039 975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 1e-56
PRK05743 912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 1e-51
PRK13804 961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 8e-38
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 5e-36
TIGR00395 938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 5e-35
PRK12300 897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 6e-35
COG0495 814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 2e-31
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 1e-29
TIGR00396 842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 2e-28
PRK00390 805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 1e-25
PLN02843 974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 3e-25
PLN02843 974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 3e-22
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 6e-20
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 2e-18
PLN02563 963 PLN02563, PLN02563, aminoacyl-tRNA ligase 2e-18
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 2e-16
PTZ00427 1205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 6e-16
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 8e-15
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 1e-14
pfam13603178 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, 2e-13
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 3e-12
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 7e-12
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 2e-11
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 5e-11
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 1e-09
PRK12267 648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 4e-08
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 2e-07
PTZ00427 1205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 6e-07
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 6e-05
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 7e-05
PRK00133 673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 7e-04
COG0143 558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 0.004
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score = 1127 bits (2916), Expect = 0.0
 Identities = 502/590 (85%), Positives = 538/590 (91%), Gaps = 14/590 (2%)

Query: 6   SPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KT 62
            P  +  +  S  RLNPLL S  +R    P     R  +RF A AA+EN+  T P   K+
Sbjct: 5   RPSSALLSCSSIRRLNPLLLSACRRRAWAP----RRAARRFCAAAASENDVFTSPETAKS 60

Query: 63  FDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY 122
           FDFTSEERIYNWWESQGYFKPNF+RG DPFVI MPPPNVTGSLHMGHAMFVTLEDIMVRY
Sbjct: 61  FDFTSEERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRY 120

Query: 123 HRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTIT 182
           +RMKGRPTLW+PGTDHAGIATQLVVEKMLA+EGIKR +L RDEFTKRVWEWKEKYGGTIT
Sbjct: 121 NRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTIT 180

Query: 183 SQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDL 242
           +QIKRLGASCDW+RERFTLDEQLSRAVVEAF+RLHEKGLIYQGSYMVNWSPNLQTAVSDL
Sbjct: 181 NQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDL 240

Query: 243 EVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
           EVEYSEEPGTLYYIKYRVAG S DFLTIATTRPETLFGDVA+AVNP+D+ YS++IG MAI
Sbjct: 241 EVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAI 300

Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
           VPMTYGRHVPII+D+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360

Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
           AGL+     FEAR+KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLY----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 416

Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
           LAEKAL AVE GELTI+PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK  EE+
Sbjct: 417 LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEED 476

Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
           YIVAR+A+EALEKA +KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPDVSA+DFKKFYP
Sbjct: 477 YIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYP 536

Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQK 589
           TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQ +K  K
Sbjct: 537 TTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSK 586

Length = 958
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2 Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 590
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
PLN02943 958 aminoacyl-tRNA ligase 100.0
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 100.0
PLN02381 1066 valyl-tRNA synthetase 100.0
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 100.0
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PLN02843 974 isoleucyl-tRNA synthetase 100.0
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 100.0
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PLN02959 1084 aminoacyl-tRNA ligase 100.0
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PLN02563 963 aminoacyl-tRNA ligase 100.0
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 100.0
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 100.0
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
PRK12268 556 methionyl-tRNA synthetase; Reviewed 100.0
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PRK12267 648 methionyl-tRNA synthetase; Reviewed 100.0
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 100.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
PRK11893 511 methionyl-tRNA synthetase; Reviewed 100.0
PLN02610 801 probable methionyl-tRNA synthetase 100.0
PLN02224 616 methionine-tRNA ligase 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 100.0
KOG0436 578 consensus Methionyl-tRNA synthetase [Translation, 100.0
KOG1247 567 consensus Methionyl-tRNA synthetase [Translation, 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 99.95
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.94
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.94
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.94
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 99.93
PLN02946557 cysteine-tRNA ligase 99.92
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.9
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 99.9
PF13603185 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P 99.9
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 99.89
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.87
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.84
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.83
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.82
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 99.77
cd00674353 LysRS_core_class_I catalytic core domain of class 99.77
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 99.7
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.67
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 99.64
PRK12451562 arginyl-tRNA synthetase; Reviewed 99.57
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 99.54
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 99.54
PLN02286576 arginine-tRNA ligase 99.48
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.32
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.03
cd09287240 GluRS_non_core catalytic core domain of non-discri 98.72
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 98.57
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 98.57
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 98.56
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.49
PLN02907722 glutamate-tRNA ligase 98.36
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 98.28
PTZ00402601 glutamyl-tRNA synthetase; Provisional 98.27
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 98.27
PLN03233523 putative glutamate-tRNA ligase; Provisional 98.27
KOG4426656 consensus Arginyl-tRNA synthetase [Translation, ri 98.26
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 98.23
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.22
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 98.21
PRK05347554 glutaminyl-tRNA synthetase; Provisional 98.19
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 98.17
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 98.1
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 98.09
PLN02859788 glutamine-tRNA ligase 98.03
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.03
KOG1147712 consensus Glutamyl-tRNA synthetase [Translation, r 98.02
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 98.02
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 97.91
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 97.89
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 97.88
PLN02627535 glutamyl-tRNA synthetase 97.74
cd00808239 GluRS_core catalytic core domain of discriminating 97.68
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.65
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.65
KOG1148764 consensus Glutaminyl-tRNA synthetase [Translation, 97.29
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 96.33
PLN02563 963 aminoacyl-tRNA ligase 95.41
cd00802143 class_I_aaRS_core catalytic core domain of class I 95.35
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 94.2
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 92.43
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 92.38
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 91.71
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 90.23
PRK01611 507 argS arginyl-tRNA synthetase; Reviewed 90.21
PRK13354 410 tyrosyl-tRNA synthetase; Provisional 88.88
PRK12556 332 tryptophanyl-tRNA synthetase; Provisional 88.48
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 88.18
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 87.64
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 86.56
PRK12284 431 tryptophanyl-tRNA synthetase; Reviewed 86.55
PRK05912 408 tyrosyl-tRNA synthetase; Validated 86.39
PLN02486383 aminoacyl-tRNA ligase 85.55
PRK12285 368 tryptophanyl-tRNA synthetase; Reviewed 83.69
PRK08560 329 tyrosyl-tRNA synthetase; Validated 83.56
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 80.79
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 80.72
PRK00927 333 tryptophanyl-tRNA synthetase; Reviewed 80.43
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 80.37
PRK12282 333 tryptophanyl-tRNA synthetase II; Reviewed 80.01
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-145  Score=1214.93  Aligned_cols=526  Identities=59%  Similarity=1.068  Sum_probs=500.7

Q ss_pred             CCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 007761           60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH  138 (590)
Q Consensus        60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~  138 (590)
                      ++.||+ ++|++||++|++++.|.+..+...++|+|.+||||+||.||||||++.++.|+|+||+||+||+|++++|+||
T Consensus         2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh   81 (877)
T COG0525           2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH   81 (877)
T ss_pred             CCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence            578998 9999999999999999998665435699999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHh
Q 007761          139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE  218 (590)
Q Consensus       139 ~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~  218 (590)
                      +|+++|.++|+.+.++|+++.+++||+|++.||+|++++.+.|++||++||+++||+++++|+|+++.++|+++|.+|++
T Consensus        82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~  161 (877)
T COG0525          82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE  161 (877)
T ss_pred             CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence            99999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCc
Q 007761          219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM  298 (590)
Q Consensus       219 kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~  298 (590)
                      +|+||++.++|+|||+|+|+|||.||+|++..|.++||+|++.+.+.+|+|||||||||+|++||+|||+|+||++|+|+
T Consensus       162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk  241 (877)
T COG0525         162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGK  241 (877)
T ss_pred             CCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccC-ccCCCCHHHHHHHH
Q 007761          299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKKL  377 (590)
Q Consensus       299 ~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~-~~~G~~~~~a~~~i  377 (590)
                      .+++|+. +++||||++++||++||||+|++||+||++||+++++|+||+++++|++|+++++++ +|+||++++||++|
T Consensus       242 ~v~lPl~-~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kI  320 (877)
T COG0525         242 EVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKI  320 (877)
T ss_pred             EEecCCC-CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHH
Confidence            9999995 699999999999999999999999999999999999999999999999999998875 99999999999999


Q ss_pred             HHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCee
Q 007761          378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC  457 (590)
Q Consensus       378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~  457 (590)
                      ++.|++.|++++.|++.|++|+|+|||.|||+++++|||+++..+++++++++++|+++|+|+++++.+.+|+++++|||
T Consensus       321 v~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWc  400 (877)
T COG0525         321 VEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWC  400 (877)
T ss_pred             HHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCce
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             eeeecCcccccCeeEEcCCcccEEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhc
Q 007761          458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF  537 (590)
Q Consensus       458 ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~  537 (590)
                      ||||+|||||||+|||.+ ++..+++.+..+....  ...+....+++++||||||||||+|||+++|||.++ .+|+++
T Consensus       401 ISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~--~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~f  476 (877)
T COG0525         401 ISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA--AEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKKF  476 (877)
T ss_pred             eeeeeecCcccceEEecC-CCcEEeCCccccchhh--hccCchhcccCCcchhhhhhhcccccccccCCCCcc-hHHHhc
Confidence            999999999999999964 4566666664333322  111222568899999999999999999999999996 889999


Q ss_pred             CCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761          538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH  590 (590)
Q Consensus       538 ~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS  590 (590)
                      ||+|++++|+||+|||+++|+++++.++++.||+.|++||+|+|++|+|||||
T Consensus       477 yPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS  529 (877)
T COG0525         477 YPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKS  529 (877)
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999

>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
1gax_A 862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 1e-143
1qu2_A 917 Insights Into Editing From An Ile-Trna Synthetase S 2e-44
1jzq_A 821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 6e-42
1wka_A147 Structural Basis For Non-Cognate Amino Acid Discrim 3e-28
1wk9_A146 Structural Basis For Non-Cognate Amino Acid Discrim 9e-28
4aq7_A 880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 2e-22
1obh_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 5e-22
2v0c_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 5e-22
1wkb_A 810 Crystal Structure Of Leucyl-Trna Synthetase From Th 7e-17
1wz2_A 967 The Crystal Structure Of Leucyl-Trna Synthetase And 8e-17
3o0a_A219 Crystal Structure Of The Wild Type Cp1 Hydrolitic D 8e-08
2ajg_A196 Crystal Structure Of The Editing Domain Of E. Coli 9e-08
3ziu_A 637 Crystal Structure Of Mycoplasma Mobile Leucyl-trna 1e-07
3pz5_A201 The Crystal Structure Of Aaleurs-Cp1-D20 Length = 2 1e-07
3pz0_A221 The Crystal Structure Of Aaleurs-Cp1 Length = 221 1e-07
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 1e-07
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 1e-07
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 2e-07
1wk8_A194 Isoleucyl-Trna Synthetase Editing Domain Complexed 1e-05
1wny_A186 Isoleucyl-Trna Synthetase Editing Domain Length = 1 1e-05
1ue0_A182 Isoleucyl-Trna Synthetase Editing Domain Complexed 4e-05
1udz_A182 Isoleucyl-Trna Synthetase Editing Domain Length = 1 4e-05
2csx_A497 Crystal Structure Of Aquifex Aeolicus Methionyl-Trn 6e-05
3kfl_A564 Leishmania Major Methionyl-Trna Synthetase In Compl 3e-04
2x1l_A524 Crystal Structure Of Mycobacterium Smegmatis Methio 6e-04
1a8h_A500 Methionyl-Trna Synthetase From Thermus Thermophilus 6e-04
1woy_A500 Crystal Structure Of Methionyl Trna Synthetase Y225 6e-04
2d54_A502 Crystal Structure Of Methionyl Trna Synthetase Y225 7e-04
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure 
Iteration: 1

 Score =  505 bits (1301), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/540 (48%), Positives = 347/540 (64%), Gaps = 20/540 (3%)
Query: 59  LPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDI 118
           LPK +D  S E  +    ++  F  N + G  PFVI MPPPNVTGSLHMGHA+  +L+D 
Sbjct: 3   LPKAYDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDA 62
Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
           ++RY RM+G   +WLPGTDHAGIATQ+VVE++L  EG  R +L R++F +RVW+WKE+ G
Sbjct: 63  LIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122
Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
           GTI  Q+KRLGAS DW+RE FT+DE+ SRAV  AF R + +GL Y+   +VNW P  +T 
Sbjct: 123 GTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETT 182
Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
           +SDLEVE    PG LY ++Y V G   F+ IAT RPET+F D A+AV+P+DE Y   +G 
Sbjct: 183 LSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGK 241
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
            A +P+T    +PI++D  V+K+FGTG LK++P HD  DY +  + GL  ++V+N +G +
Sbjct: 242 RARIPLTEV-WIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM 300
Query: 359 --NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
               V    RGLDRFEAR+K      E G  VK+E +T+ +    R G  IE  +  QW+
Sbjct: 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWW 360
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--- 473
           + M PLAE+ L  + +G++  +PER++K+   WL N+KDW ISRQLWWGH+IP WY    
Sbjct: 361 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 420
Query: 474 ----VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529
               V + E Y+    + EA      K        +D DV DTWFSSALWP STLGWP+ 
Sbjct: 421 QAVNVPRPERYLEDPTSCEACGSPRLK--------RDEDVFDTWFSSALWPLSTLGWPE- 471
Query: 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQK 589
             +D K FYP  +L TG+DILF WV+RM + G  F G  PF  V LHGL+ D + +K  K
Sbjct: 472 ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 531
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 Back     alignment and structure
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 147 Back     alignment and structure
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 146 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain From Aquifex Aeolicus Leucyl-Trna Length = 219 Back     alignment and structure
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl- Trna Synthetase Length = 196 Back     alignment and structure
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 Back     alignment and structure
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20 Length = 201 Back     alignment and structure
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1 Length = 221 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With The Pre-Transfer Editing Substrate Analogue, Val-Ams Length = 194 Back     alignment and structure
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 186 Back     alignment and structure
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L- Valine Length = 182 Back     alignment and structure
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 182 Back     alignment and structure
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 Back     alignment and structure
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 Back     alignment and structure
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 Back     alignment and structure
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 0.0
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-111
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 1e-101
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 2e-73
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 5e-64
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 2e-57
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 1e-29
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 3e-28
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 2e-14
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 7e-14
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 2e-13
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 5e-13
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 8e-13
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 6e-11
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 6e-11
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 2e-10
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 3e-10
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 5e-10
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 6e-10
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 2e-09
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 2e-09
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 9e-06
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
 Score =  959 bits (2481), Expect = 0.0
 Identities = 256/531 (48%), Positives = 344/531 (64%), Gaps = 8/531 (1%)

Query: 59  LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
           LPK +D  S E +    W  +  F  N + G  PFVI MPPPNVTGSLHMGHA+  +L+D
Sbjct: 3   LPKAYDPKSVEPKWAEKWA-KNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61

Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
            ++RY RM+G   +WLPGTDHAGIATQ+VVE++L  EG  R +L R++F +RVW+WKE+ 
Sbjct: 62  ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121

Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
           GGTI  Q+KRLGAS DW+RE FT+DE+ SRAV  AF R + +GL Y+   +VNW P  +T
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181

Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
            +SDLEVE    PG LY ++Y V G   F+ IAT RPET+F D A+AV+P+DE Y   +G
Sbjct: 182 TLSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLG 240

Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
             A +P+T    +PI++D  V+K+FGTG LK++P HD  DY +  + GL  ++V+N +G 
Sbjct: 241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGR 299

Query: 358 LNE--VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415
           +    V    RGLDRFEAR+K      E G  VK+E +T+ +    R G  IE  +  QW
Sbjct: 300 MEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQW 359

Query: 416 FVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475
           ++ M PLAE+ L  + +G++  +PER++K+   WL N+KDW ISRQLWWGH+IP WY   
Sbjct: 360 WLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWY-CE 418

Query: 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
             +   V R      +    +   +  + +D DV DTWFSSALWP STLGWP+   +D K
Sbjct: 419 DCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPE-ETEDLK 477

Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKK 586
            FYP  +L TG+DILF WV+RM + G  F G  PF  V LHGL+ D + +K
Sbjct: 478 AFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQK 528
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Length = 147 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Length = 196 Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Length = 219 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 100.0
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 100.0
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 100.0
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 100.0
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 99.97
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 99.96
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.96
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 99.96
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.96
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 99.96
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 99.94
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.93
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 99.92
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 99.67
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 99.65
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 99.63
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 99.57
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.46
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 98.61
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 98.52
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 98.52
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 98.48
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 98.45
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 98.36
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 98.24
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.22
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.03
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 97.99
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 97.98
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 97.86
2cyb_A 323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 95.22
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 94.95
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 94.2
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 93.23
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 92.03
3tzl_A 322 Tryptophanyl-tRNA synthetase; structural genomics, 91.02
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 89.83
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 89.82
2g36_A 340 Tryptophanyl-tRNA synthetase; TM0492, structural g 89.71
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 89.22
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 88.41
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 88.08
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 88.06
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 87.47
1jil_A 420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 87.47
2ts1_A 419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 87.22
1h3f_A 432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 86.6
1yi8_B 351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 86.33
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 86.33
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 86.14
1i6k_A 328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 85.26
2cya_A 364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 84.94
2el7_A 337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 84.9
3vgj_A 373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 84.45
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 84.14
2yy5_A 348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 83.48
2j5b_A 348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 82.05
3hzr_A 386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 81.76
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 81.14
2zp1_A 314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 80.21
3tze_A 406 Tryptophanyl-tRNA synthetase; structural genomics, 80.19
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
Probab=100.00  E-value=1.3e-132  Score=1155.23  Aligned_cols=525  Identities=49%  Similarity=0.901  Sum_probs=493.4

Q ss_pred             CCCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761           59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD  137 (590)
Q Consensus        59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D  137 (590)
                      .++.|++ ++|++||++|++ +.|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus         3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D   81 (862)
T 1gax_A            3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD   81 (862)
T ss_dssp             CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred             CccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccC
Confidence            3678998 899999999999 99999876678899999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHH
Q 007761          138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH  217 (590)
Q Consensus       138 ~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~  217 (590)
                      |||+|+|.++++.+.+.|+++.++++++|++.||+|++++.+.|+++|++||+++||+++++|++++|.+.|+++|.+|+
T Consensus        82 ~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~  161 (862)
T 1gax_A           82 HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY  161 (862)
T ss_dssp             CCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence            99999999999888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccC
Q 007761          218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG  297 (590)
Q Consensus       218 ~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G  297 (590)
                      ++|+||++.++|+|||.|+|+|||+||+|++..|.++||+|++.+. .+|+|||||||||+||+||+|||+|+||++|+|
T Consensus       162 ~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G  240 (862)
T 1gax_A          162 HEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLLG  240 (862)
T ss_dssp             TTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGTTCCCEEECSSCCTTCSCTT
T ss_pred             HCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC-CEEEEEeCCccccccceEEEECCCccHHHHHcC
Confidence            9999999999999999999999999999999999999999999765 799999999999999999999999999999999


Q ss_pred             cEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceeccc--CccCCCCHHHHHH
Q 007761          298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEARK  375 (590)
Q Consensus       298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~--~~~~G~~~~~a~~  375 (590)
                      +++.+|++ ++.+||++++||++++|||+||+||+||++||++|++||||+++++|++|++++++  |.|.||++++||+
T Consensus       241 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~  319 (862)
T 1gax_A          241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARR  319 (862)
T ss_dssp             CCCBCTTC-CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHH
T ss_pred             CEEECCCC-CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHH
Confidence            99999995 79999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             HHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCC
Q 007761          376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD  455 (590)
Q Consensus       376 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~D  455 (590)
                      .|+++|++.|++++.+++.|++|+|||||+||++++++||||+++++++++++++++++++|+|++.++++.+||++++|
T Consensus       320 ~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~D  399 (862)
T 1gax_A          320 KAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKD  399 (862)
T ss_dssp             HHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             eeeeeecCcccccCeeEEcCCcccEEEeCChhHHHHH--hhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhh
Q 007761          456 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD  533 (590)
Q Consensus       456 W~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~  533 (590)
                      |||||||+||+|||+|+|+++ +...+.. .+++...  ....+|. ..+.|++||||||||||+||+++++||++. ++
T Consensus       400 W~ISRqr~WG~pIP~w~~~~~-~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~-~~  475 (862)
T 1gax_A          400 WNISRQLWWGHQIPAWYCEDC-QAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWFSSALWPLSTLGWPEET-ED  475 (862)
T ss_dssp             CCCBCCCSSSCCCCCEEETTT-CCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHHHHTSCTTGGGTTTSCC-HH
T ss_pred             eeEecccCCCcccCceecCCC-CEEEEec-cccccccchhhhhcCc-hheecCCcccceeeccCCcchhhccCCCch-HH
Confidence            999999999999999999752 3333332 1111100  0012222 268999999999999999999999999765 78


Q ss_pred             hhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761          534 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH  590 (590)
Q Consensus       534 f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS  590 (590)
                      |++|||+|++++|+||+|||+++|+++++.+.++.||++|++||+|+|.+|+|||||
T Consensus       476 ~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKS  532 (862)
T 1gax_A          476 LKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKS  532 (862)
T ss_dssp             HHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTT
T ss_pred             HHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 590
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 6e-50
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 1e-32
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 9e-49
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 1e-36
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 5e-28
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 3e-35
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 5e-23
d1wkaa1143 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) 1e-30
d1ffya2194 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il 5e-26
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 2e-22
d1h3na2192 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS 7e-21
d1udza_179 b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T 4e-19
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 3e-18
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 5e-04
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 8e-16
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 2e-05
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  176 bits (446), Expect = 6e-50
 Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 2/198 (1%)

Query: 59  LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
           LPK +D  S E +    W    +     + G  PFVI MPPPNVTGSLHMGHA+  +L+D
Sbjct: 3   LPKAYDPKSVEPKWAEKWAKNPFVANP-KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61

Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
            ++RY RM+G   +WLPGTDHAGIATQ+VVE++L  EG  R +L R++F +RVW+WKE+ 
Sbjct: 62  ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121

Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
           GGTI  Q+KRLGAS DW+RE FT+DE+ SRAV  AF R + +GL Y+   +VNW P  +T
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181

Query: 238 AVSDLEVEYSEEPGTLYY 255
            +SDLEVE     GT   
Sbjct: 182 TLSDLEVETCSRCGTPIE 199
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 100.0
d1wkaa1143 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1udza_179 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1ffya2194 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.98
d1h3na2192 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.97
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.85
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.59
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.41
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.25
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.58
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.32
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.24
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 93.65
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 88.84
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 86.57
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 86.24
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 82.27
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 81.49
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 80.76
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 80.2
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=4.5e-77  Score=648.27  Aligned_cols=366  Identities=25%  Similarity=0.490  Sum_probs=323.8

Q ss_pred             CCCCCh-HHHHHHHHHHHhcCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761           60 PKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT  136 (590)
Q Consensus        60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~  136 (590)
                      ++++++ ++|++||++|++++.|++..  .+++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++||
T Consensus        15 ~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~   94 (450)
T d1ffya3          15 PMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW   94 (450)
T ss_dssp             CSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEE
T ss_pred             CCCCChHHHHHHHHHHHHHCCCccccccccCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            678897 89999999999999998743  345678999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761          137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL  216 (590)
Q Consensus       137 D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L  216 (590)
                      |+||+|||    .++.+.+.++.+++++++.+.|++++.++.+.+++++++||+++||.+++.|++++|.+.++++|.+|
T Consensus        95 D~~G~pie----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l  170 (450)
T d1ffya3          95 DTHGLPIE----QALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEM  170 (450)
T ss_dssp             BCCSHHHH----HHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHH
T ss_pred             ccCCcHHH----HHHHhhCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHH
Confidence            99999965    44566788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCccccccc
Q 007761          217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI  296 (590)
Q Consensus       217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~  296 (590)
                      +++|+||++.++|+|||.|+|++++.|++                                                   
T Consensus       171 ~~~G~iy~~~~~v~~~p~~~~~~~~~e~~---------------------------------------------------  199 (450)
T d1ffya3         171 ADKGLIYKGKKPVYWSPSSESSLAEAEIE---------------------------------------------------  199 (450)
T ss_dssp             HHTTCEEEEEEEEEEETTTTEECCGGGEE---------------------------------------------------
T ss_pred             HHcCCeeccccccccccccCccccccccc---------------------------------------------------
Confidence            99999999999999999999999998774                                                   


Q ss_pred             CcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHH
Q 007761          297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKK  376 (590)
Q Consensus       297 G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~  376 (590)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (450)
T d1ffya3         200 --------------------------------------------------------------------------------  199 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCe
Q 007761          377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW  456 (590)
Q Consensus       377 i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW  456 (590)
                                          +|+|+||+.+++.+.++|||+++..+++.+++++.  .+.+.|+..+.++.+|+++++||
T Consensus       200 --------------------~~~~~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dw  257 (450)
T d1ffya3         200 --------------------YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEW  257 (450)
T ss_dssp             --------------------EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCE
T ss_pred             --------------------ccccccccCCceeeccccceeccccccccchhhcc--cccccccccceeeeccccCccch
Confidence                                25699999999999999999999999999999987  58899999999999999999999


Q ss_pred             eeeeecCcccccCeeEEcCCcccEEEe-CChhHHHHHh-----------------hhhc----CCCcceeecCceeEEee
Q 007761          457 CISRQLWWGHRIPVWYIVGKEEEYIVA-RNADEALEKA-----------------HQKY----GKNVEIYQDPDVLDTWF  514 (590)
Q Consensus       457 ~ISRqr~WG~pIPi~~~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~----~~~~~~~~~~dvlDvWf  514 (590)
                      ||||||+||+|||+|++..  ...+.. ..........                 ...+    ..+..+.+++||+|+||
T Consensus       258 ~iSRqr~WG~piP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wf  335 (450)
T d1ffya3         258 VISRQRVWGVPLPVFYAEN--GEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWF  335 (450)
T ss_dssp             ECEESCSSSCBCCCEECTT--SCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHH
T ss_pred             heeeecccccCcceeecCC--CCEecchhhhHHHHHhhhhcCccccccccccccccccccccCCCCCcceeeeeeecccc
Confidence            9999999999999999854  222221 1111111100                 0001    12345889999999999


Q ss_pred             cCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761          515 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH  590 (590)
Q Consensus       515 dS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS  590 (590)
                      ||+++++..++++.      ..+||+|++++|+||+|||++++++.++.+.++.||++|++||+|+|.+|+|||||
T Consensus       336 ds~~~~~~~~~~~~------~~~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS  405 (450)
T d1ffya3         336 DSGSSHRGVLETRP------ELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKS  405 (450)
T ss_dssp             HHHTHHHHTTTTST------TCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSS
T ss_pred             cccccccccccccc------cccCCCcccccCcchhhHHHHHHHHHHHHhcCCCCcceEEEcceEECCCCCCCCCC
Confidence            99999988776443      35699999999999999999999999999999999999999999999999999999
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure