Citrus Sinensis ID: 007762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
Protein Sequence
MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQHSPAQGHEDLEAQH
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccEEEcccccccccccccHHHHcccccccEEEcccccccccccccccHHccccccccEEEccccccEEcccHHccccccccEEEccccccccccccccccccccccEEEccccEEEEEccHHcccccccccEEEccccEEEEEcccccccccccccccEEEccccccccccccccccccccccEEEEEccccEEcccHHHHHcccccccEEccccEEEEEccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccEEEEEccHHHHccccccEEEcccccccccccHHHHcccccccEEcccccccccccccccccccccEEEcccccccccccccccccccccEEccccEEEEEccHHHHcccccccEEEccccccccccHHHHHccccccEEccccccccccccHHHHccccccEEEcccccccccccccHHcccHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHccccccEEEEEccccccccccccHHHHHHcccccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccccccHHccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccHHHHHHHccccccccccccccHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mssyevngvlrgqgfphfkslellDMECTRIALNTSFLQIISEsmpslkylslsdstlgtnsskildrglCSLVHLQELYIynndlrgslpwcmaNMTSLRILYVSsnqltgsisssplvhltsieelhlsnnhfqipisleplfnhsrlkVFWAKNNEinaeitqspsltapnfqlsrlslssgygdgvifpkflyhqhdleyvdlshmkmngefptwllenntnleSLFLVndslagpfrlpihshkrlrlldisnnnfrghipveigdvlpgLFSLNISmnaldgsipssfgnmkFLQLLDVtnnqltgeipehlavGCVNLEYLALsnnsleghmfsrnfnltnlkwlqlegnhfvgeipqslskCFVLEglflnnnslsgmiprWLGNLTRLQhimmpknhlegpipvefcqldwlqildisdnnisgslpscfhplsiehVHLSKnmlhgqlkrgtffnyHSLVTLDLsynrlngsisdWVDGLSQLSHLILghnnlegevpVQLCklnqlqlldlsnnnlhgpippcfdnttlhesysnssspnkqFEIFFfiqgpqghprLATLVmnqhspaqghedleaqh
Flexible Loop (DISEMBL)
mssyevngvlrgqgfphFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEitqspsltapNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQHSPaqghedleaqh
Low Complexity Region (SEG)
MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVqlcklnqlqlldlsnnnlHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQHSPAQGHEDLEAQH
Disordered region (IsUnstruct)
******NGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQ***LTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTL************QFEIFFFIQGPQG***L*********************
Disordered Region (DISOPRED)
MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATL******************
Disordered Region (DISEMBL)
MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLH********PNKQFEIFFFIQGPQGHPRLATLVMNQHSPAQGHEDLEAQH
Disordered Region (DISPRO)
****EVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMN***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQHSPAQGHEDLEAQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	590	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.776	0.390	0.324	7e-46
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.772	0.364	0.323	1e-45
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.728	0.378	0.342	2e-45
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.732	0.426	0.322	3e-45
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.772	0.451	0.322	2e-44
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.754	0.356	0.336	2e-43
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.755	0.409	0.320	3e-43
Q9LHP4	1141	Receptor-like protein kin	no	no	0.8	0.413	0.312	1e-42
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.716	0.354	0.316	9e-42
Q42371	976	LRR receptor-like serine/	no	no	0.759	0.459	0.336	4e-41

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  185 bits (470), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 245/509 (48%), Gaps = 51/509 (10%)

Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G CS   L +L +Y+N L G +P  + N+  L+ L +  N+LT SI SS L  LT +  L
Sbjct: 261 GNCS--SLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSS-LFRLTQLTHL 317

Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPS----LTAPNFQLSRLS--L 182
            LS NH   PIS E  F  S L+V    +N    E  QS +    LT      + +S  L
Sbjct: 318 GLSENHLVGPISEEIGFLES-LEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGEL 376

Query: 183 SSGYG-----------DGVI---FPKFLYHQHDLEYVDLSHMKMNGEFPTWL-------- 220
            +  G           D ++    P  + +   L+ +DLSH +M GE P           
Sbjct: 377 PADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFI 436

Query: 221 --------------LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIP 266
                         + N +NLE+L + +++L G  +  I   ++LR+L +S N+  G IP
Sbjct: 437 SIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIP 496

Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
            EIG+ L  L  L +  N   G IP    N+  LQ L + +N L G IPE +      L 
Sbjct: 497 REIGN-LKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEM-FDMKLLS 554

Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
            L LSNN   G + +    L +L +L L+GN F G IP SL    +L    +++N L+G 
Sbjct: 555 VLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGT 614

Query: 387 IP-RWLGNLTRLQ-HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS- 443
           IP   L +L  +Q ++    N L G IP E  +L+ +Q +D+S+N  SGS+P        
Sbjct: 615 IPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKN 674

Query: 444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
           +  +  S+N L G +    F     +++L+LS N  +G I      ++ L  L L  NNL
Sbjct: 675 VFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNL 734

Query: 504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532
            GE+P  L  L+ L+ L L++NNL G +P
Sbjct: 735 TGEIPESLANLSTLKHLKLASNNLKGHVP 763

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  184 bits (468), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 240/491 (48%), Gaps = 35/491 (7%)

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           L SLV+L+ L + +N+L G++P    N+ +L++L ++S +LTG I S     L  ++ L 
Sbjct: 140 LGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSR-FGRLVQLQTLI 198

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
           L +N  + PI  E + N + L +F A  N +N  +   P+       L  L+L      G
Sbjct: 199 LQDNELEGPIPAE-IGNCTSLALFAAAFNRLNGSL---PAELNRLKNLQTLNLGDNSFSG 254

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK 249
            I P  L     ++Y++L   ++ G  P  L E   NL++L L +++L G          
Sbjct: 255 EI-PSQLGDLVSIQYLNLIGNQLQGLIPKRLTE-LANLQTLDLSSNNLTGVIHEEFWRMN 312

Query: 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
           +L  L ++ N   G +P  I      L  L +S   L G IP+   N + L+LLD++NN 
Sbjct: 313 QLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNT 372

Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSK 369
           LTG+IP+ L    V L  L L+NNSLEG + S   NLTNL+   L  N+  G++P+ +  
Sbjct: 373 LTGQIPDSL-FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGF 431

Query: 370 CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD---------- 419
              LE ++L  N  SG +P  +GN TRLQ I    N L G IP    +L           
Sbjct: 432 LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLREN 491

Query: 420 --------------WLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFF 464
                          + ++D++DN +SGS+PS F  L ++E   +  N L G L   +  
Sbjct: 492 ELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPD-SLI 550

Query: 465 NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 524
           N  +L  ++ S N+ NGSIS      S LS  +   N  EG++P++L K   L  L L  
Sbjct: 551 NLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVT-ENGFEGDIPLELGKSTNLDRLRLGK 609

Query: 525 NNLHGPIPPCF 535
           N   G IP  F
Sbjct: 610 NQFTGRIPRTF 620

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 237/467 (50%), Gaps = 37/467 (7%)

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           L +L  LQ L++  N L+G+LP  ++N +SL  L  S N++ G I ++    L  +E L 
Sbjct: 206 LGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAA-YGALPKLEVLS 264

Query: 130 LSNNHFQ--IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYG 187
           LSNN+F   +P SL   F ++ L +     N   ++I + P  TA               
Sbjct: 265 LSNNNFSGTVPFSL---FCNTSLTIVQLGFNAF-SDIVR-PETTA--------------- 304

Query: 188 DGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS 247
                      +  L+ +DL   +++G FP WL  N  +L++L +  +  +G     I +
Sbjct: 305 ---------NCRTGLQVLDLQENRISGRFPLWL-TNILSLKNLDVSGNLFSGEIPPDIGN 354

Query: 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
            KRL  L ++NN+  G IPVEI      L  L+   N+L G IP   G MK L++L +  
Sbjct: 355 LKRLEELKLANNSLTGEIPVEIKQC-GSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGR 413

Query: 308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSL 367
           N  +G +P  + V    LE L L  N+L G        LT+L  L L GN F G +P S+
Sbjct: 414 NSFSGYVPSSM-VNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSI 472

Query: 368 SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 427
           S    L  L L+ N  SG IP  +GNL +L  + + K ++ G +PVE   L  +Q++ + 
Sbjct: 473 SNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQ 532

Query: 428 DNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW 486
            NN SG +P  F  L S+ +V+LS N   G++ + TF     LV+L LS N ++GSI   
Sbjct: 533 GNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQ-TFGFLRLLVSLSLSDNHISGSIPPE 591

Query: 487 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533
           +   S L  L L  N L G +P  L +L +L++LDL  NNL G IPP
Sbjct: 592 IGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPP 638

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  183 bits (465), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 161/499 (32%), Positives = 235/499 (47%), Gaps = 67/499 (13%)

Query: 59  GTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSP 118
           G N S  L   L +LV L+ L +  N  +GSLP    N+  LR L +S N LTG + S  
Sbjct: 149 GNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSV- 207

Query: 119 LVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLS 178
           L  L S+E   L  N F+ PI                                       
Sbjct: 208 LGQLPSLETAILGYNEFKGPI--------------------------------------- 228

Query: 179 RLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA 238
                         P    + + L+Y+DL+  K++GE P+ L +  + LE+L L  ++  
Sbjct: 229 --------------PPEFGNINSLKYLDLAIGKLSGEIPSELGKLKS-LETLLLYENNFT 273

Query: 239 GPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMK 298
           G     I S   L++LD S+N   G IP+EI  +        +  N L GSIP +  ++ 
Sbjct: 274 GTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMR-NKLSGSIPPAISSLA 332

Query: 299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH 358
            LQ+L++ NN L+GE+P  L      L++L +S+NS  G + S   N  NL  L L  N 
Sbjct: 333 QLQVLELWNNTLSGELPSDLGKNS-PLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNT 391

Query: 359 FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL 418
           F G+IP +LS C  L  + + NN L+G IP   G L +LQ + +  N L G IP +    
Sbjct: 392 FTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDS 451

Query: 419 DWLQILDISDNNISGSLPSCFHPLSIEHVH---LSKNMLHGQLKRGTFFNYHSLVTLDLS 475
             L  +D S N I  SLPS    LSI ++    ++ N + G++    F +  SL  LDLS
Sbjct: 452 VSLSFIDFSRNQIRSSLPSTI--LSIHNLQAFLVADNFISGEVPD-QFQDCPSLSNLDLS 508

Query: 476 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF 535
            N L G+I   +    +L  L L +NNL GE+P Q+  ++ L +LDLSNN+L G +P   
Sbjct: 509 SNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESI 568

Query: 536 DNTT----LHESYSNSSSP 550
             +     L+ SY+  + P
Sbjct: 569 GTSPALELLNVSYNKLTGP 587

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 234/478 (48%), Gaps = 22/478 (4%)

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           L SL +L +L +Y N++RG LP  + N+T L  L +S N L G I S  +  LT I  L 
Sbjct: 158 LGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSD-VAQLTQIWSLQ 216

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
           L  N+F   +    L+N S LK+     N  +  +     +  PN  L   ++   Y  G
Sbjct: 217 LVANNFS-GVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN--LLSFNMGGNYFTG 273

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG------PFRL 243
            I P  L +   LE + ++   + G  PT+   N  NL+ LFL  +SL         F  
Sbjct: 274 SI-PTTLSNISTLERLGMNENNLTGSIPTF--GNVPNLKLLFLHTNSLGSDSSRDLEFLT 330

Query: 244 PIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLL 303
            + +  +L  L I  N   G +P+ I ++   L +L++    + GSIP   GN+  LQ L
Sbjct: 331 SLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKL 390

Query: 304 DVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI 363
            +  N L+G +P  L    +NL YL+L +N L G + +   N+T L+ L L  N F G +
Sbjct: 391 ILDQNMLSGPLPTSLG-KLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIV 449

Query: 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 423
           P SL  C  L  L++ +N L+G IP  +  + +L  + M  N L G +P +   L  L  
Sbjct: 450 PTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGT 509

Query: 424 LDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482
           L + DN +SG LP    + L++E + L  N+ +G +          +  +DLS N L+GS
Sbjct: 510 LSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP--DLKGLVGVKEVDLSNNDLSGS 567

Query: 483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI-----PPCF 535
           I ++    S+L +L L  NNLEG+VPV+    N   +  + NN+L G I      PC 
Sbjct: 568 IPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCL 625

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  177 bits (450), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 240/490 (48%), Gaps = 45/490 (9%)

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           L+HL    + +N+L G +P  ++N+TSL  L++ SNQLTG I S  L  L +I  L + +
Sbjct: 97  LIHLD---LSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQ-LGSLVNIRSLRIGD 152

Query: 133 NHF--QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGV 190
           N     IP +L  L N   L++    +  +   I   PS      ++  L L   Y +G 
Sbjct: 153 NELVGDIPETLGNLVN---LQMLALASCRLTGPI---PSQLGRLVRVQSLILQDNYLEGP 206

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWL--LENNTNLESLFLVNDSLAGPFRLPIHSH 248
           I P  L +  DL     +   +NG  P  L  LEN   LE L L N+SL G     +   
Sbjct: 207 I-PAELGNCSDLTVFTAAENMLNGTIPAELGRLEN---LEILNLANNSLTGEIPSQLGEM 262

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
            +L+ L +  N  +G IP  + D L  L +L++S N L G IP  F NM  L  L + NN
Sbjct: 263 SQLQYLSLMANQLQGLIPKSLAD-LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANN 321

Query: 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS 368
            L+G +P+ +     NLE L LS   L G +        +LK L L  N   G IP++L 
Sbjct: 322 HLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALF 381

Query: 369 KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 428
           +   L  L+L+NN+L G +   + NLT LQ +++  N+LEG +P E   L  L++L + +
Sbjct: 382 ELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYE 441

Query: 429 NNISGSLP----SCFH---------------PLSIEH------VHLSKNMLHGQLKRGTF 463
           N  SG +P    +C                 P SI        +HL +N L G L   + 
Sbjct: 442 NRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLP-ASL 500

Query: 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 523
            N H L  LDL+ N+L+GSI      L  L  L+L +N+L+G +P  L  L  L  ++LS
Sbjct: 501 GNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLS 560

Query: 524 NNNLHGPIPP 533
           +N L+G I P
Sbjct: 561 HNRLNGTIHP 570

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 164/512 (32%), Positives = 246/512 (48%), Gaps = 66/512 (12%)

Query: 76  LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
           ++ L +  + L G L   +  + SL  L +S N  +G + S+ L + TS+E L LSNN F
Sbjct: 78  VETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPST-LGNCTSLEYLDLSNNDF 136

Query: 136 --QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFP 193
             ++P     L N   L   +   N ++  I   P+      +L  L +S     G I P
Sbjct: 137 SGEVPDIFGSLQN---LTFLYLDRNNLSGLI---PASVGGLIELVDLRMSYNNLSGTI-P 189

Query: 194 KFLYHQHDLEYVDLSHMKMNGEFPT--WLLENNTNLESLFLVNDSLAGPFRLPIHSHKRL 251
           + L +   LEY+ L++ K+NG  P   +LLEN   L  LF+ N+SL G       + K+L
Sbjct: 190 ELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSSNCKKL 246

Query: 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT 311
             LD+S N+F+G +P EIG+    L SL +    L G+IPSS G ++ + ++D+++N+L+
Sbjct: 247 VSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLS 305

Query: 312 GEIPEHLAVGCVNLEYLALSNNSLEG---------------------------------- 337
           G IP+ L   C +LE L L++N L+G                                  
Sbjct: 306 GNIPQELG-NCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQ 364

Query: 338 ---HMFSRNFNLTN-----------LKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
               M   N  LT            LK L L  N F G+IP SL     LE + L  N  
Sbjct: 365 SLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRF 424

Query: 384 SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 443
           +G IP  L +  +L+  ++  N L G IP    Q   L+ + + DN +SG LP     LS
Sbjct: 425 TGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLS 484

Query: 444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
           + +V+L  N   G + R +  +  +L+T+DLS N+L G I   +  L  L  L L HN L
Sbjct: 485 LSYVNLGSNSFEGSIPR-SLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYL 543

Query: 504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF 535
           EG +P QL    +L   D+ +N+L+G IP  F
Sbjct: 544 EGPLPSQLSGCARLLYFDVGSNSLNGSIPSSF 575

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  174 bits (442), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 249/537 (46%), Gaps = 65/537 (12%)

Query: 47  SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVS 106
           SL+ L++S    G N +  L   L   + L+ L + +N L G +PW ++ + +L  L ++
Sbjct: 106 SLQKLTIS----GANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILN 161

Query: 107 SNQLTGSISSSPLVHLTSIEELHLSNNHF--QIPISLEPLFNHSRLKVFWAKNNEINAEI 164
           SNQLTG I    +   + ++ L L +N     IP  L  L     +++    N EI+ +I
Sbjct: 162 SNQLTGKIPPD-ISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRI--GGNKEISGQI 218

Query: 165 TQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPT------ 218
              PS       L+ L L+     G + P  L     LE + +    ++GE P+      
Sbjct: 219 ---PSEIGDCSNLTVLGLAETSVSGNL-PSSLGKLKKLETLSIYTTMISGEIPSDLGNCS 274

Query: 219 -----WLLENN------------TNLESLFLVNDSLAGPFRLPIHSHKRLRLLD------ 255
                +L EN+            T LE LFL  +SL G     I +   L+++D      
Sbjct: 275 ELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLL 334

Query: 256 ------------------ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNM 297
                             IS+N F G IP  I +    L  L +  N + G IPS  G +
Sbjct: 335 SGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNC-SSLVQLQLDKNQISGLIPSELGTL 393

Query: 298 KFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN 357
             L L    +NQL G IP  LA  C +L+ L LS NSL G + S  F L NL  L L  N
Sbjct: 394 TKLTLFFAWSNQLEGSIPPGLA-DCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISN 452

Query: 358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 417
              G IPQ +  C  L  L L  N ++G IP  +G+L ++  +    N L G +P E   
Sbjct: 453 SLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGS 512

Query: 418 LDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY 476
              LQ++D+S+N++ GSLP+    LS ++ + +S N   G++   +     SL  L LS 
Sbjct: 513 CSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIP-ASLGRLVSLNKLILSK 571

Query: 477 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL-LDLSNNNLHGPIP 532
           N  +GSI   +   S L  L LG N L GE+P +L  +  L++ L+LS+N L G IP
Sbjct: 572 NLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIP 628

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  172 bits (435), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 156/493 (31%), Positives = 223/493 (45%), Gaps = 70/493 (14%)

Query: 76  LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
           L  L + NN   G +P  + +   L+ L ++SN L+GSI    L    S+E + LS N  
Sbjct: 331 LDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRE-LCGSGSLEAIDLSGNLL 389

Query: 136 QIPISLEPLFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPK 194
              I  E +F+  S L      NN+IN  I +          L  L L S    G I PK
Sbjct: 390 SGTI--EEVFDGCSSLGELLLTNNQINGSIPED----LWKLPLMALDLDSNNFTGEI-PK 442

Query: 195 FLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLL 254
            L+   +L     S+ ++ G  P  +  N  +L+ L L ++ L G     I     L +L
Sbjct: 443 SLWKSTNLMEFTASYNRLEGYLPAEI-GNAASLKRLVLSDNQLTGEIPREIGKLTSLSVL 501

Query: 255 DISNNNFRGHIPVEIGD-----------------------VLPGLFSLNISMNALDGSIP 291
           +++ N F+G IPVE+GD                        L  L  L +S N L GSIP
Sbjct: 502 NLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIP 561

Query: 292 SS---------FGNMKFLQ---LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM 339
           S            ++ FLQ   + D++ N+L+G IPE L   C+ L  ++LSNN L G +
Sbjct: 562 SKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGE-CLVLVEISLSNNHLSGEI 620

Query: 340 FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQH 399
            +    LTNL  L L GN   G IP+ +     L+GL L NN L+G IP   G L  L  
Sbjct: 621 PASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVK 680

Query: 400 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLK 459
           + + KN L+GP+P     L  L  +D+S NN+SG L S                      
Sbjct: 681 LNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSS---------------------- 718

Query: 460 RGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 519
                    LV L +  N+  G I   +  L+QL +L +  N L GE+P ++C L  L+ 
Sbjct: 719 --ELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEF 776

Query: 520 LDLSNNNLHGPIP 532
           L+L+ NNL G +P
Sbjct: 777 LNLAKNNLRGEVP 789

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  169 bits (429), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 13/461 (2%)

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           L  L  + +  N L G +P  + + +SL+ L +S N+L+G I  S +  L  +E+L L N
Sbjct: 91  LKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFS-ISKLKQLEQLILKN 149

Query: 133 NHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIF 192
           N    PI    L     LK+     N+++ EI   P L   N  L  L L      G I 
Sbjct: 150 NQLIGPIP-STLSQIPNLKILDLAQNKLSGEI---PRLIYWNEVLQYLGLRGNNLVGNIS 205

Query: 193 PKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLR 252
           P  L     L Y D+ +  + G  P  +  N T  + L L  + L G     I    ++ 
Sbjct: 206 PD-LCQLTGLWYFDVRNNSLTGSIPETI-GNCTAFQVLDLSYNQLTGEIPFDI-GFLQVA 262

Query: 253 LLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG 312
            L +  N   G IP  IG ++  L  L++S N L GSIP   GN+ F + L + +N+LTG
Sbjct: 263 TLSLQGNQLSGKIPSVIG-LMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTG 321

Query: 313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFV 372
            IP  L      L YL L++N L GH+      LT+L  L +  N   G IP  LS C  
Sbjct: 322 SIPPELG-NMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTN 380

Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
           L  L ++ N  SG IPR    L  + ++ +  N+++GPIPVE  ++  L  LD+S+N I+
Sbjct: 381 LNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKIN 440

Query: 433 GSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
           G +PS    L  +  ++LS+N + G +  G F N  S++ +DLS N ++G I + ++ L 
Sbjct: 441 GIIPSSLGDLEHLLKMNLSRNHITGVVP-GDFGNLRSIMEIDLSNNDISGPIPEELNQLQ 499

Query: 492 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532
            +  L L +NNL G V   L     L +L++S+NNL G IP
Sbjct: 500 NIILLRLENNNLTGNVG-SLANCLSLTVLNVSHNNLVGDIP 539

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	590
255581263	912	serine-threonine protein kinase, plant-t	0.871	0.563	0.529	1e-139
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.9	0.362	0.445	1e-110
224123984	1016	predicted protein [Populus trichocarpa]	0.893	0.518	0.450	1e-105
224073436	1014	predicted protein [Populus trichocarpa]	0.889	0.517	0.441	1e-104
224134891	953	predicted protein [Populus trichocarpa]	0.888	0.549	0.443	1e-104
224142481	781	predicted protein [Populus trichocarpa]	0.847	0.640	0.466	1e-102
224102049	577	predicted protein [Populus trichocarpa]	0.776	0.793	0.474	3e-98
224098008	1097	predicted protein [Populus trichocarpa]	0.896	0.482	0.431	3e-98
224073382	1309	predicted protein [Populus trichocarpa]	0.791	0.356	0.458	2e-96
224073422	969	predicted protein [Populus trichocarpa]	0.849	0.517	0.437	3e-94

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/525 (52%), Positives = 363/525 (69%), Gaps = 11/525 (2%)

Query: 10  LRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRG 69
           ++ Q  P+F++LE L ++  +I L  SFLQ +   M SLK LSLS   L      +  +G
Sbjct: 168 IQAQDLPNFENLEELYLD--KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           LC L+HL+ L + +N+  G LPWC++N+TSL++L +SSNQ  G IS+SPL  L S+ +L 
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
           +SNNHFQ+P SL P FNHS LK    +NN I  E       +AP FQL  + + SGYG  
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEAELH---SAPRFQLISI-IFSGYGIC 338

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK 249
             FP FLYHQ++L++VDLSH+ + GEFP WLL NNT LE L LVN+SL+G  +LP+H H 
Sbjct: 339 GTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHV 398

Query: 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
            L  LDISNN+   HIP+EIG  LP L  LN+S N  DGSIPSSFGNM  L++LD++NNQ
Sbjct: 399 NLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQ 458

Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSK 369
           L+G IPEHLA GC +L  L LSNNSL+G MFS+ FNLTNL WL+L+ NHF G IP+SLSK
Sbjct: 459 LSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK 518

Query: 370 CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
              L  + L++N LSGMIP W+GNL+ LQ++++  N L+GPIPVEFCQL +L++LD+++N
Sbjct: 519 S-ALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANN 577

Query: 430 NISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG 489
           ++SG LPSC  P SI HVHLS+NM+ G      F   H LVTLDLS NR+ G I   + G
Sbjct: 578 SVSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGG 636

Query: 490 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC 534
           ++ L  L L  N  +GE+P Q+C L QL L+ L++NNL G IP C
Sbjct: 637 INALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC 681

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/550 (44%), Positives = 339/550 (61%), Gaps = 19/550 (3%)

Query: 17   HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHL 76
            + ++LE+LD+  T I+  +S LQI+ E M SLK LSL  +  G N S+   +GLC L +L
Sbjct: 690  NLRNLEVLDLSSTNIS--SSILQIV-EVMTSLKALSLRSN--GINGSQTALQGLCKLKNL 744

Query: 77   QELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
            QEL + +N   GS+  C+ N+TSLR L +S N+ +G++ SS    L  +E L LS+N FQ
Sbjct: 745  QELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQ 804

Query: 137  IPISLEPLFNHSRLKVF--WAKNNEINAEITQSPSLT-APNFQLSRLSLSSGYGDGVIFP 193
                +     HS+L+V      NN +   + +S   T  P+FQL    LSS        P
Sbjct: 805  TFPPISSFAKHSKLEVLDLICGNNTL---LLESEDQTWVPSFQLKVFRLSSCILKTGSIP 861

Query: 194  KFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRL 253
             FL++QHDL  VDLS+  +  +FPTWL++NNT LE L L N+SL G F LP   +     
Sbjct: 862  SFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSA 921

Query: 254  LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
            +DISNN  +G +P  I   LP L  LN+S N+ +GSIPS FG M+ L  LD++NN  TG 
Sbjct: 922  IDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGG 980

Query: 314  IPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
            IPE LA+GC +LEYL LS N L G MF R  NL +L+ L+L+ NHF G+IP  LS    L
Sbjct: 981  IPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGL 1039

Query: 374  EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
            E L++++NS+SG +P W+GN++ L  ++MP N LEGPIPVEFC LD L++LD+S+NN+SG
Sbjct: 1040 ERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSG 1099

Query: 434  SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQL 493
            SLPSCF P  + HVHL +N L G L +  F     L TLD+  N L+G I DW+   S L
Sbjct: 1100 SLPSCFSPSLLIHVHLQENHLTGPLTKA-FTRSMDLATLDIRNNNLSGGIPDWISMFSGL 1158

Query: 494  SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQ 553
            S L+L  N+ +G++P QLC+L+++ +LDLS N+L G IP C +       + +      +
Sbjct: 1159 SILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSG-----K 1213

Query: 554  FEIFFFIQGP 563
            F I  +   P
Sbjct: 1214 FSIISYFPSP 1223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 248/551 (45%), Positives = 334/551 (60%), Gaps = 24/551 (4%)

Query: 3   SYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNS 62
           S  +NG      F +  +LE L ++ + + LN  FL  I   +P+LK LS  +  L   +
Sbjct: 229 STSINGT-----FFNSTTLEELYLDGSSLPLN--FLHNIG-VLPALKVLSAGECDL---N 277

Query: 63  SKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHL 122
             +  +GLC L +L++L++  N+L GSLP C  N++SL++L VS NQ  G+I+SSPL +L
Sbjct: 278 GTLPAQGLCGLKNLEQLFLSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNL 337

Query: 123 TSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSL 182
            S+E + LSNNHFQ+PIS++P  NHS L+ F + NN +  E      L  P FQL   SL
Sbjct: 338 LSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMSFHDLI-PKFQLVFFSL 396

Query: 183 SSGYGDG--VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGP 240
           S    +   V  P FLY+QHDL  +DLS     G FP+WLL+NNT LE LFL  +S  G 
Sbjct: 397 SKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGT 456

Query: 241 FRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFL 300
            +L  H +  +  +DISNNN  G IP  I  +   L++L ++ N L G IPS  GN   L
Sbjct: 457 LQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSL 516

Query: 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV 360
            +LD++NNQL+    E      + L +L LSNN+L G + +   N + L +L L  N+F 
Sbjct: 517 GVLDLSNNQLSMVELEQF----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFW 572

Query: 361 GEI---PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 417
           G+I   P  +   + +  L L+NN  SGM+PRW  NLT++  I + KNH  GPIPVEFC+
Sbjct: 573 GQISDFPSPIKTIWPV--LDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCK 630

Query: 418 LDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
           LD L+ LD+SDNN+  S+PSCF+P  I HVHLSKN L G L  G F+N  SLVTLDL  N
Sbjct: 631 LDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYG-FYNSSSLVTLDLRDN 689

Query: 478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
              GSIS+W+  LS LS L+L  NN +GE  VQLC L QL +LD+S N L GP+P C  N
Sbjct: 690 NFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGN 749

Query: 538 TTLHESYSNSS 548
            +  ESY  +S
Sbjct: 750 LSFKESYEKAS 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/546 (44%), Positives = 339/546 (62%), Gaps = 21/546 (3%)

Query: 1   MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTL-G 59
           + S  VNG         F S  L ++   R +L  +FLQ I  ++P LK LS+++  L G
Sbjct: 211 LGSTTVNGTF-------FNSSTLEELYLDRTSLPINFLQNIG-ALPDLKVLSVAECDLHG 262

Query: 60  TNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPL 119
           T    +  +G C L +L++L +  N+L GSLP C+ N++SL++L VS NQ TG+I+S PL
Sbjct: 263 T----LPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPL 318

Query: 120 VHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSR 179
            +LTS+E L LSNN F++PIS++P  NHS LK F ++NN++  E     +L  P FQL  
Sbjct: 319 TNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLI-PKFQLVF 377

Query: 180 LSLS-SGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA 238
             LS +     V  P FLY+Q+D+  +DLSH  +   FP+WLL+NNT LE L+L N+S  
Sbjct: 378 FRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFV 437

Query: 239 GPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMK 298
           G  +L  H +  +  LDISNNN  G IP +I  + P ++SL ++ N   G IPS  GN+ 
Sbjct: 438 GTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNIS 497

Query: 299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH 358
            L++LD++NNQL+    E L      + +L LSNN+L G + +  FN + L++L L GN+
Sbjct: 498 SLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNN 553

Query: 359 FVGEIPQSLSKCFVL-EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 417
           F G+I   L   + +   L L++N  SGM+PRWL N T L  I + KN+ +GPI  +FC+
Sbjct: 554 FWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCK 613

Query: 418 LDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
           L+ L+ LD+S+NN+SG +PSCF P  I HVHLS+N L G L  G F+N  SLVT+DL  N
Sbjct: 614 LNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMDLRDN 672

Query: 478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
              GS  +W+  LS LS L+L  N+ +GE+PVQLC L QL +LD+S N L GP+P C  N
Sbjct: 673 NFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGN 732

Query: 538 TTLHES 543
            T  ES
Sbjct: 733 LTFKES 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/543 (44%), Positives = 330/543 (60%), Gaps = 19/543 (3%)

Query: 6   VNGVLRGQG-FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTL-GTNSS 63
            NG+  G G F +  +LE L ++ T + +N  FLQ I  ++P+LK LS+++  L GT   
Sbjct: 159 ANGLTAGSGTFFNSSTLEELYLDNTSLRIN--FLQNIG-ALPALKVLSVAECDLHGT--- 212

Query: 64  KILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT 123
            +  +G C L +L++L +  N+  GSLP C+ N++SL++L VS NQ TG+ +S PL +L 
Sbjct: 213 -LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLI 271

Query: 124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLS 183
           S+E L LSNN F++PIS++P  NHS LK F ++NN +  E     +L  P FQL    LS
Sbjct: 272 SLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTEPVAFDNLI-PKFQLVFFRLS 330

Query: 184 SGYGDGV--IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF 241
           S        + P FLY+Q DL  +DLSH  + G FP+WLL+NNT LE L+L  +   G  
Sbjct: 331 SSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTL 390

Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
           +L  H +  +  LDISNNN  G I  +I  + P L++L ++ N   G IPS  GN+  L 
Sbjct: 391 QLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLL 450

Query: 302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG 361
            LD++NNQL+    E L +       L LSNNSL G + +  FN +  ++L L GN+F G
Sbjct: 451 FLDLSNNQLSTVQLEQLTI-----PVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSG 505

Query: 362 EIPQ-SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420
           +I    L     L  L L+NN  SGM+PR   N T L+ + + KNH +GPIP +FC+L  
Sbjct: 506 QISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGR 565

Query: 421 LQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
           LQ LD+S+NN+SG +PSCF P  + HVHLSKN L G L  G FFN   LVT+DL  N L 
Sbjct: 566 LQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYG-FFNSSYLVTMDLRDNSLT 624

Query: 481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTL 540
           GSI +W+   S LS L+L  N+ +GE+PVQLC L QL +LD+S N L GP+P C  N T 
Sbjct: 625 GSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTF 684

Query: 541 HES 543
            ES
Sbjct: 685 KES 687

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 252/540 (46%), Positives = 329/540 (60%), Gaps = 40/540 (7%)

Query: 5   EVNGVLRGQGFPH---FKSLELLDMECTRIALNT-SFLQIISESMPSLKYLSLSDSTLGT 60
           E+       GF        LE+L++   +I  +T SFL    E + SLK+L+L ++ L  
Sbjct: 11  EIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL----EGLSSLKHLNLDNNQL-- 64

Query: 61  NSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLV 120
               I  +GLC L  LQEL I  NDL G LP C+ N+ +L++L +S N  +G+IS S + 
Sbjct: 65  -KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIG 122

Query: 121 HLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRL 180
            LTSI +L LS+NHFQIPISL P FN S LK     +NEI  E T+      P FQL RL
Sbjct: 123 SLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEI-YESTELVHNLIPRFQLQRL 181

Query: 181 SLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGP 240
           SL+  +G G  FPKFLY+QHDL++VDLSH+K+ GEFP+WLL+NNT LE+L+LVN SL+G 
Sbjct: 182 SLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGS 240

Query: 241 FRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFL 300
            +LP  SH  L  LDIS N+ +  IP +IG   P L  LN+S N   GSIPSS  NM  L
Sbjct: 241 LQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSL 300

Query: 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV 360
            +LD++NN L+G IPE L  GC++L  L LSNN L+G  F R+FNL  L  L L GN   
Sbjct: 301 GVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLT 360

Query: 361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420
           G +P SLS    LE L ++ N+LSG IPRW+G ++ LQ+                     
Sbjct: 361 GILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQY--------------------- 399

Query: 421 LQILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
              LD+S+NN+ GSLPS F    ++  V+LSKN L G L  G      SL  LDLS+N  
Sbjct: 400 ---LDLSENNLYGSLPSSFCSSRTMTEVYLSKNKLEGSLI-GALDGCLSLNRLDLSHNYF 455

Query: 480 NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
            G I + +  L +LS L+LG+NNLEG++P QLCKL +L L+DLS+N+L G I PC   T+
Sbjct: 456 GGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTS 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 221/466 (47%), Positives = 290/466 (62%), Gaps = 8/466 (1%)

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           LC L  LQEL I  N++ GSLP C +N+T+L+ L +S N  TG+IS SP+  LTSI +L+
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
           LS+NHFQIPISL P FN S LK      NE+  E T+      P FQL RLSL+   G G
Sbjct: 67  LSDNHFQIPISLGPFFNLSNLKNLNGDRNEL-YESTELVHNLIPRFQLQRLSLAYT-GSG 124

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK 249
             F K LY+QHDL++VDLSH+KM GEFP+WLL+NNT LE L+LVN+S +G F+L  HS  
Sbjct: 125 GTFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLD 184

Query: 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
           RL  LDIS N+    IP EIG   P L  LN+S N   GSIPSS  NM  L++LD++NN+
Sbjct: 185 RLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNE 244

Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSK 369
           L+G IPEHL   C++L  L LSNN L+G  F RNFNL  L  L L GN   G +P SLS 
Sbjct: 245 LSGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSN 304

Query: 370 CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
              LE L ++ N+LSG IPRW+ N++ L+++ + +N+L G +P  FC    +  + +S N
Sbjct: 305 GSRLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFCSSMMMTEVYLSKN 364

Query: 430 NISGSLPSCFHP-LSIEHVHLSKNMLHGQL--KRGTFFNYHSLVTLDLSYNRLNGSISDW 486
            + GSL   F   LS+  + LS N L G++  K G   N   +  L+LS+N L G I   
Sbjct: 365 KLEGSLIDAFDGCLSLNKLDLSHNSLTGEIPFKLGYLGN---IQVLNLSHNSLTGPIPPT 421

Query: 487 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532
              L ++  L + +NNL GE+P QL  L+ L    ++ NNL G  P
Sbjct: 422 FSNLKKIESLDISYNNLNGEIPYQLVDLDSLSAFSVAYNNLSGKTP 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 236/547 (43%), Positives = 328/547 (59%), Gaps = 18/547 (3%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTL-GTNSSKILDRGLCSL 73
           F +  +LE L ++ T + +N  FLQ  + ++P+LK LS+++  L GT    +  +G C L
Sbjct: 357 FFNSSTLEELHLDNTSLPIN--FLQN-TGALPALKVLSVAECDLHGT----LPAQGWCEL 409

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
            +L++L +  N+  G+LP C+ N++SL++L VS NQ TG+I+  PL  L S+E L LSNN
Sbjct: 410 KNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNN 469

Query: 134 HFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD---GV 190
            F++PIS++P  NHS LK F ++NN +  E     +L  P FQL    LSS        V
Sbjct: 470 LFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLI-PKFQLVFFRLSSSPTSEALNV 528

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKR 250
               FLY+Q+DL  +DLSH  + G FP+WLL+NNT +E L+L  +S  G  +L  H +  
Sbjct: 529 EILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPN 588

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
           +  LDISNNN  G IP +I  + P L+ L ++ N   G IPS  GN   L  LD++NNQL
Sbjct: 589 MTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQL 648

Query: 311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQ-SLSK 369
           +    E L      ++ L LSNNSL G + +  FN +  ++L L GN+F G+I    L  
Sbjct: 649 STVKLEQLTT----IQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFPLYG 704

Query: 370 CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
             V   L L+NN  SGM+PR   N T  + + + KN  +GPIP +FC+LD L+ LD+SDN
Sbjct: 705 WKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDN 764

Query: 430 NISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG 489
            +SG +PSCF+P  I H+HLSKN L G L  G F+N  SLVT+DL  N   GSI +W+  
Sbjct: 765 YLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNWIGN 823

Query: 490 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 549
           LS LS L+L  NN +GE+ VQLC L QL +LD+S N L GP+P C  N TL E   N+  
Sbjct: 824 LSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEIPENARG 883

Query: 550 PNKQFEI 556
               F +
Sbjct: 884 SRIWFSV 890

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 220/480 (45%), Positives = 301/480 (62%), Gaps = 13/480 (2%)

Query: 69   GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
            G C + +L++L +  N+  GSLP C+ N++SL++L +S NQ TG+I+ SPL +L S+E L
Sbjct: 567  GWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFL 626

Query: 129  HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLS-SGYG 187
             LSNN F++P S++P  NHS LK F  +NN +  E      L  P FQL   SLS +   
Sbjct: 627  SLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLI-PKFQLVFFSLSKTTEA 685

Query: 188  DGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS 247
              V  P FLY+Q+ L ++DLSH  + G FP+WLL+NNT LE L+L  +S+ G  +L  H 
Sbjct: 686  LNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHP 745

Query: 248  HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
            + ++  LDISNNN  G IP +I  + P L  L ++ N   G IPS  GNM  L +LD++N
Sbjct: 746  YPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSN 805

Query: 308  NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI---P 364
            NQL+    E L      + +L LSNN+L G + +  FN +  ++L L  N+F G+I   P
Sbjct: 806  NQLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSP 861

Query: 365  QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQI 423
             +  K +++  L L+NN  SG++PRW  N T L  I + KNH EGPI    FC+LD L+ 
Sbjct: 862  LNGWKTWIV--LDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEY 919

Query: 424  LDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI 483
            LD+S+NN+ G +PSCF+   I HVHLSKN L G LK   F+N  SLVT+DL  N   GSI
Sbjct: 920  LDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSI 978

Query: 484  SDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHES 543
             +WV  LS LS L+L  N+L+GE+PVQLC L QL +LD+S N L GP+P C +N T  ES
Sbjct: 979  PNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKES 1038

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 231/528 (43%), Positives = 319/528 (60%), Gaps = 27/528 (5%)

Query: 20  SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTL-GTNSSKILDRGLCSLVHLQE 78
           +LE L ++ T + +N  FLQ  + ++P+LK LS+ +  L GT    +  +G C L +L++
Sbjct: 200 TLEELHLDNTSLPIN--FLQN-TRALPALKVLSVGECDLHGT----LPAQGWCELKNLKQ 252

Query: 79  LYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIP 138
           L +  N+  G+LP C+ N++SL +L VS NQ TG+I S PL +L S+E L LSNN F++P
Sbjct: 253 LDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVP 312

Query: 139 ISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSL-SSGYGDGVIFPKFLY 197
            S++P  NHS LK F ++NN +  E     +L  P FQL  LSL  +     V  P FLY
Sbjct: 313 TSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLI-PKFQLVFLSLLKTTEALNVHIPDFLY 371

Query: 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDIS 257
           +Q+DL  +DLSH  + G FP+WLL+NNT +E L L ++S  G  +LP H +  +  LDIS
Sbjct: 372 YQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDIS 431

Query: 258 NNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH 317
           NNN    IP +I  +LP L SL +  N   G IPS  GN+  L +LD++NNQL+    E 
Sbjct: 432 NNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLEL 491

Query: 318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQ-SLSKCFVLEGL 376
           L      L +L LSNN+L G +    FN + L++L L GN+F G+I   SL +  +   L
Sbjct: 492 LTT----LMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVL 547

Query: 377 FLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSL 435
            L+NN  SGM+PRW  N T L+ I + KNH +GPIP + FC+ D L+ LD+S+NN+SG +
Sbjct: 548 DLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYI 607

Query: 436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSH 495
           PSCF P  I H+HLSKN L G L  G F+N  SLVT+DL  N    SI +W+  LS LS 
Sbjct: 608 PSCFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSV 666

Query: 496 LILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHES 543
           L+L  N+ +           QL +LD+S N L GP+P C  N T  ES
Sbjct: 667 LLLRANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKES 704

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	590
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.884	0.481	0.372	6.2e-78
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.854	0.504	0.357	6.5e-74
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.891	0.545	0.349	2.3e-71
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.901	0.597	0.329	1.2e-67
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.798	0.518	0.363	1.8e-65
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.861	0.520	0.337	7.8e-63
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.866	0.546	0.324	1.9e-56
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.752	0.438	0.346	3.7e-47
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.755	0.392	0.318	2.8e-46
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.718	0.432	0.339	3.9e-46

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 201/540 (37%), Positives = 292/540 (54%)

Query:    47 SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVS 106
             SL+ L    + L       L  G+C L+ L+EL + +N L  SLP+C+ N+T LR L +S
Sbjct:   333 SLQVLDFKRNQLSLTHEGYL--GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLS 389

Query:   107 SNQLTGSISSSPLVHLTSI-EELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEIT 165
             +NQL G++SS  +  L S+ E L L +N+F        L N +RL VF   ++++     
Sbjct:   390 NNQLNGNLSSF-VSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVF-KLSSKVGVIQV 447

Query:   166 QSPSLTAPNFQLSRLSLSS-GYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN 224
             Q+ S  AP FQL  L LS+   G  ++   FL HQ DL +VDLSH K+ G FPTWL++NN
Sbjct:   448 QTESSWAPLFQLKMLYLSNCSLGSTML--GFLVHQRDLCFVDLSHNKLTGTFPTWLVKNN 505

Query:   225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
             T L+++ L  +SL    +LPI  H  L++LDIS+N     I  +IG V P L  +N S N
Sbjct:   506 TRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSN 563

Query:   285 ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF 344
                G+IPSS G MK LQ+LD+++N L G++P     GC +L  L LSNN L+G +FS++ 
Sbjct:   564 HFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHA 623

Query:   345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
             NLT L  L L+GN+F G + + L K   L  L +++N  SGM+P W+G ++RL ++ M  
Sbjct:   624 NLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSG 683

Query:   405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF 464
             N L+GP P    Q  W++++DIS N+ SGS+P   +  S+  + L  N   G L  G  F
Sbjct:   684 NQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLF 741

Query:   465 NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXX 524
                 L  LDL  N  +G I + +D  S+L  L+L +N+ +  +P                
Sbjct:   742 KAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSH 801

Query:   525 XXXHGPIPPCFDNTTLH-ESYSNSSSPNKQFEIFF--FIQGPQ--GHPRLATLVMNQHSP 579
                 GPIP CF   +   E    + S    F+  +  F+   Q   H  L   V N + P
Sbjct:   802 NQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQP 861

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 190/532 (35%), Positives = 285/532 (53%)

Query:    20 SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTN--------SSKILDRGLC 71
             ++ELLD+   R   N S       ++  LK L LSD+   ++         +K L  G C
Sbjct:   199 NVELLDLSRNRF--NGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLS-GTC 255

Query:    72 SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
                +++EL + NN L G  P C+ ++T LR+L +SSNQLTG++ S+ L +L S+E L L 
Sbjct:   256 PWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLF 314

Query:   132 NNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVI 191
              N+F+   SL  L N S+LKV    +   + E+    S   P FQL  ++L S   + V 
Sbjct:   315 GNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWK-PKFQLVVIALRSCNLEKV- 372

Query:   192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRL 251
              P FL HQ DL +VDLS  +++G FP+WLLENNT LE L L N+S    F+LP  +H  L
Sbjct:   373 -PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAHNLL 430

Query:   252 RLLDISNNNFRGHIPVE-IGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
               L++S N F  H+ ++  G +LP L  +N++ N   G++PSS  NMK ++ LD+++N+ 
Sbjct:   431 -FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRF 488

Query:   311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKC 370
              G++P     GC NL  L LS+N L G +F    N T L  + ++ N F G I +     
Sbjct:   489 HGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSL 548

Query:   371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 430
               L  L ++NN L+G+IP W+G    L  + +  N LEG IP     + +LQ+LD+S N 
Sbjct:   549 PSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNR 608

Query:   431 ISGSLPSCFHPLSIEH---VHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV 487
             +SG +P   H  SI H   + L  N L G +      N   ++ LDL  NRL+G++ +++
Sbjct:   609 LSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPEFI 663

Query:   488 DGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTT 539
             +    +S L+L  NN  G++P                   +G IP C  NT+
Sbjct:   664 N-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTS 714

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 192/550 (34%), Positives = 286/550 (52%)

Query:     1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSF-LQIISESMPSLKYLSLSDSTL- 58
             + S  ++G    +      +LELLD+   R   N S  +Q +S S+  LK L LS +   
Sbjct:   163 LRSNNMDGSFPAKELRDLTNLELLDLSRNRF--NGSIPIQELS-SLRKLKALDLSGNEFS 219

Query:    59 ------GTNSSKIL---DRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQ 109
                   G   + +L     G+C L ++QEL +  N L G LP C+ ++T LR+L +SSN+
Sbjct:   220 GSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNK 279

Query:   110 LTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPS 169
             LTG++ SS L  L S+E L L +N F+   S   L N S L V    +   + ++  S S
Sbjct:   280 LTGTVPSS-LGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SES 337

Query:   170 LTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLES 229
                P FQLS ++L S   + V  P FL HQ DL +VDLS   ++G+ P+WLL NNT L+ 
Sbjct:   338 SWKPKFQLSVIALRSCNMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKV 395

Query:   230 LFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGS 289
             L L N+ L   F++P  +H  L  LD+S N+F    P  IG + P L  LN S N    +
Sbjct:   396 LLLQNN-LFTSFQIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQEN 453

Query:   290 IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNL 349
             +PSS GNM  +Q +D++ N   G +P     GC ++  L LS+N L G +F  + N TN+
Sbjct:   454 LPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNI 513

Query:   350 KWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG 409
               L ++ N F G+I Q L     LE L ++NN+L+G+IP W+G L  L  +++  N L+G
Sbjct:   514 LGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKG 573

Query:   410 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSL 469
              IP+       LQ+LD+S N++SG +P      +   + L  N L G +      N    
Sbjct:   574 DIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVE-- 631

Query:   470 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHG 529
               LDL  NR +G I ++++ +  +S L+L  NN  G++P                   +G
Sbjct:   632 -ILDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNG 689

Query:   530 PIPPCFDNTT 539
              IP C  NT+
Sbjct:   690 TIPSCLSNTS 699

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 179/544 (32%), Positives = 289/544 (53%)

Query:     7 NGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKIL 66
             + + +G GFP  + + L  +E   +  N    Q+ ++ + +L+ L   D +    S  + 
Sbjct:   112 DNLFKG-GFPVQELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQ 170

Query:    67 DRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE 126
              +G+C L  LQEL +  N   G +P C +  + LR+L +SSN L+G I    +    S+E
Sbjct:   171 KQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISDFKSME 229

Query:   127 ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGY 186
              L L +N F+   SL  +   + LKVF   +     +I ++        QLS + LS   
Sbjct:   230 YLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSH-C 288

Query:   187 GDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIH 246
               G I P FL++Q +L  +DLS+  ++G FPTWLLENNT L++L L N+S      LP  
Sbjct:   289 NLGKI-PGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-R 345

Query:   247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             + +RL++LD+S NNF   +P ++G +L  L  LN+S N   G++PSS   M+ ++ +D++
Sbjct:   346 TMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLS 405

Query:   307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
              N  +G++P +L  GC +L +L LS+N   G +  ++ + T+L  L ++ N F G+IP++
Sbjct:   406 YNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRT 465

Query:   367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI 426
             L    +L  + L+NN L+G IPRWLGN   L+ + +  N L+G IP     + +L +LD+
Sbjct:   466 LLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDL 524

Query:   427 SDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW 486
             S N +SGSLP          + L  N L G +   T   ++ L  LDL  N+L+G+I  +
Sbjct:   525 SGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIP-DTL--WYGLRLLDLRNNKLSGNIPLF 581

Query:   487 VDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHES-YS 545
                 S +S ++L  NNL G++PV                  +  IP C  N +     +S
Sbjct:   582 RSTPS-ISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHS 640

Query:   546 NSSS 549
             N+ S
Sbjct:   641 NADS 644

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 1.8e-65, Sum P(2) = 1.8e-65
 Identities = 178/490 (36%), Positives = 248/490 (50%)

Query:    20 SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSD-STLGTNSSKILDRGLCSLVHLQE 78
             +LELLD+   RI      + +     P LK L   D S+ G  SS    +  C + +LQE
Sbjct:   171 NLELLDLSGNRI---DGSMPV--REFPYLKKLKALDLSSNGIYSSMEW-QVFCEMKNLQE 224

Query:    79 LYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIP 138
             L +   +  G LP C  N+  LR L +SSNQLTG+I  S    L S+E L LS+N F+  
Sbjct:   225 LDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGF 283

Query:   139 ISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYH 198
              SL PL N ++LKVF   + +   ++ +  S   P FQLS L L     + +  P FL +
Sbjct:   284 FSLNPLTNLTKLKVFIFSSKDDMVQV-KIESTWQPLFQLSVLVLRLCSLEKI--PNFLMY 340

Query:   199 QHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISN 258
             Q +L  VDLS  +++G  PTWLLENN  LE L L N+S    F++P   H  L++LD S 
Sbjct:   341 QKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQVLDFSE 398

Query:   259 NNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHL 318
             NN  G  P   G VLP L  +N S N   G+ PSS G M  +  LD++ N L+GE+P+  
Sbjct:   399 NNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSF 458

Query:   319 AVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL 378
                C +L  L LS+N   GH   R  N T+L  L++  N F G+I   L     L  L +
Sbjct:   459 VSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDM 518

Query:   379 NNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 438
             +NN L G +P  L     L  + +  N L G +P     LD   +L + +NN +G +P  
Sbjct:   519 SNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLD--NVLFLHNNNFTGPIPDT 575

Query:   439 FHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLIL 498
             F   SI+ + L  N L G + +  F +   +  L L  N L G I   +   S++  L L
Sbjct:   576 FLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDL 632

Query:   499 GHNNLEGEVP 508
               N L G +P
Sbjct:   633 SDNKLNGFIP 642

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 7.8e-63, P = 7.8e-63
 Identities = 177/525 (33%), Positives = 271/525 (51%)

Query:    15 FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
             F H + L+ LD+     +      ++  + + +L+ L L+ + L      I     C + 
Sbjct:   206 FTHLEKLKALDLSANDFSSLVELQEL--KVLTNLEVLGLAWNHL---DGPIPKEVFCEMK 260

Query:    75 HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
             +L++L +  N   G LP C+ N+  LR+L +SSNQL+G++ +S    L S+E L LS+N+
Sbjct:   261 NLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNN 319

Query:   135 FQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPK 194
             F+   SL PL N ++LKVF   +     ++ ++ S   P FQL+  +L      G I P 
Sbjct:   320 FEGFFSLNPLANLTKLKVFRLSSTSEMLQV-ETESNWLPKFQLTVAALPF-CSLGKI-PN 376

Query:   195 FLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLL 254
             FL +Q +L  VDLS  +++G+ PTWLLENN  L+ L L N+S    F++P   HK L++L
Sbjct:   377 FLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVL 434

Query:   255 DISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEI 314
             D S N+  G +P  IG VLP L  +N S N   G++PSS G M  +  LD++ N  +GE+
Sbjct:   435 DFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGEL 494

Query:   315 PEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLE 374
             P  L  GC +L  L LS+NS  G +      LT+L  L++  N F GEI   L     L 
Sbjct:   495 PRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLS 554

Query:   375 GLFLNNNSLSGMIPRWLG-NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
                 +NN L+G+I   +  + + L  +++  N LEG +P     +  L  LD+S N +SG
Sbjct:   555 IFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSG 614

Query:   434 SLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ 492
              LPS   + +    + L  N   G L      N +    LDL  N+L+GSI  +V+    
Sbjct:   615 DLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAY---ILDLRNNKLSGSIPQFVNTGKM 671

Query:   493 LSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDN 537
             ++ L+ G NNL G +P                   +G IPPC ++
Sbjct:   672 ITLLLRG-NNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNH 715

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 1.9e-56, P = 1.9e-56
 Identities = 174/537 (32%), Positives = 253/537 (47%)

Query:     5 EVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSK 64
             E++G    +G     +LELLD+   +  LN S  ++I   +  LK L LS +    +SS 
Sbjct:   159 EMDGPFPIKGLKDLTNLELLDLRANK--LNGSMQELIH--LKKLKALDLSSNKF--SSSM 212

Query:    65 ILDRGLCSLVHLQELYIYNNDLRGSLPW-CMANMTSLRILYVSSNQLTGSISSSPLVHLT 123
              L   L +L++L+ L +  N + G +P      + +LR L +  N   G I    L  L 
Sbjct:   213 ELQE-LQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLK 270

Query:   124 SIEELHLSNNHFQ--IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLS 181
              +  L LS+N     +P S   L     L+     +N  +   + +P LT  N    +  
Sbjct:   271 KLRVLDLSSNQLSGDLPSSFSSL---ESLEYLSLSDNNFDGSFSLNP-LT--NLTNLKFV 324

Query:   182 LSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF 241
             +   +      P FL +Q  L  VDLS   ++G  PTWLL NN  LE L L N+S    F
Sbjct:   325 VVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IF 383

Query:   242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
              +P   H  L++ D S NN  G  P ++   LP L  LN S N   G  P+S G MK + 
Sbjct:   384 PIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNIS 441

Query:   302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG 361
              LD++ N  +G++P     GCV++ +L LS+N   G    R  N  +L  L+++ N F G
Sbjct:   442 FLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTG 501

Query:   362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
              I   LS   +L  L ++NN LSG IPRWL     L ++++  N LEG IP     + +L
Sbjct:   502 NIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFL 561

Query:   422 QILDISDNNISGSLPSCFHP-LSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
               LD+S N  SG+LPS     L I ++ L  N   G +   T     S+  LDL  N+L+
Sbjct:   562 SFLDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIP-DTLLK--SVQILDLRNNKLS 617

Query:   481 GSISDWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDN 537
             GSI  + D    ++ L+L  NNL G +P                   +G IP C  N
Sbjct:   618 GSIPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSN 673

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-47, P = 3.7e-47
 Identities = 166/479 (34%), Positives = 250/479 (52%)

Query:    41 ISESMPSLKYL-SLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTS 99
             IS+S+  L  L S + S  G  S  +L +   S+  L+ + I  N   GSL +  +N  S
Sbjct:    87 ISDSISQLSSLVSFNISCNGFES--LLPK---SIPPLKSIDISQNSFSGSL-FLFSN-ES 139

Query:   100 LRILYV--SSNQLTGSISSSPLVHLTSIEELHLSNNHFQ--IPISLEPLFNHSRLKVFWA 155
             L ++++  S N L+G+++   L +L S+E L L  N FQ  +P S +   N  +L+    
Sbjct:   140 LGLVHLNASGNNLSGNLTED-LGNLVSLEVLDLRGNFFQGSLPSSFK---NLQKLRFLGL 195

Query:   156 KNNEINAEITQSPSLTAPNFQLSRLSLSS-GYGD--GVIFPKFLYHQHDLEYVDLSHMKM 212
               N +  E+   PS+     QL  L  +  GY +  G I P+F  + + L+Y+DL+  K+
Sbjct:   196 SGNNLTGEL---PSVLG---QLPSLETAILGYNEFKGPIPPEF-GNINSLKYLDLAIGKL 248

Query:   213 NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDV 272
             +GE P+ L +  + LE+L L  ++  G     I S   L++LD S+N   G IP+EI   
Sbjct:   249 SGEIPSELGKLKS-LETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITK- 306

Query:   273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
             L  L  LN+  N L GSIP +  ++  LQ+L++ NN L+GE+P  L      L++L +S+
Sbjct:   307 LKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSP-LQWLDVSS 365

Query:   333 NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLG 392
             NS  G + S   N  NL  L L  N F G+IP +LS C  L  + + NN L+G IP   G
Sbjct:   366 NSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFG 425

Query:   393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVH---L 449
              L +LQ + +  N L G IP +      L  +D S N I  SLPS    LSI ++    +
Sbjct:   426 KLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTI--LSIHNLQAFLV 483

Query:   450 SKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 508
             + N + G++    F +  SL  LDLS N L G+I   +    +L  L L +NNL GE+P
Sbjct:   484 ADNFISGEVP-DQFQDCPSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIP 541

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.8e-46, P = 2.8e-46
 Identities = 151/474 (31%), Positives = 245/474 (51%)

Query:    44 SMPSLKYLSLSDSTL-GTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM-TSLR 101
             ++P L+ LSLS++   GT    +      ++V L     +++ +R   P   AN  T L+
Sbjct:   256 ALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLG-FNAFSDIVR---PETTANCRTGLQ 311

Query:   102 ILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF--QIPISLEPLFNHSRLKVFWAKNN- 158
             +L +  N+++G      L ++ S++ L +S N F  +IP  +  L     LK+  A N+ 
Sbjct:   312 VLDLQENRISGRFPLW-LTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKL--ANNSL 368

Query:   159 --EINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEF 216
               EI  EI Q  SL   +F+ + L        G I P+FL +   L+ + L     +G  
Sbjct:   369 TGEIPVEIKQCGSLDVLDFEGNSLK-------GQI-PEFLGYMKALKVLSLGRNSFSGYV 420

Query:   217 PTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGL 276
             P+ ++ N   LE L L  ++L G F + + +   L  LD+S N F G +PV I + L  L
Sbjct:   421 PSSMV-NLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISN-LSNL 478

Query:   277 FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLE 336
               LN+S N   G IP+S GN+  L  LD++   ++GE+P  L+ G  N++ +AL  N+  
Sbjct:   479 SFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELS-GLPNVQVIALQGNNFS 537

Query:   337 GHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTR 396
             G +     +L +L+++ L  N F GEIPQ+     +L  L L++N +SG IP  +GN + 
Sbjct:   538 GVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSA 597

Query:   397 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP-SCFHPLSIEHVHLSKNMLH 455
             L+ + +  N L G IP +  +L  L++LD+  NN+SG +P       S+  + L  N L 
Sbjct:   598 LEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLS 657

Query:   456 GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ-LSHLILGHNNLEGEVP 508
             G +  G+F    +L  +DLS N L G I   +  +S  L +  +  NNL+GE+P
Sbjct:   658 GVIP-GSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIP 710

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 3.9e-46, P = 3.9e-46
 Identities = 153/451 (33%), Positives = 239/451 (52%)

Query:    48 LKYLSLSDSTL-GTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCM-ANMTSLRILYV 105
             L YL L  + L G+   ++   G  S   LQ + + NN L G +P     ++  LR L +
Sbjct:   141 LVYLDLGSNRLNGSIPVQLFCNGSSS--SLQYIDLSNNSLTGEIPLNYHCHLKELRFLLL 198

Query:   106 SSNQLTGSISSSPLVHLTSIEELHLSNNHF--QIP---ISLEPLFNHSRLKV--FWAKNN 158
              SN+LTG++ SS L + T+++ + L +N    ++P   IS  P      L    F + NN
Sbjct:   199 WSNKLTGTVPSS-LSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNN 257

Query:   159 EINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPT 218
               N E   + SL A +  L  L L+     G I     +   +L  + L   +++G  P 
Sbjct:   258 NTNLEPFFA-SL-ANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPP 315

Query:   219 WLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFS 278
              +  N  NL  L L ++ L+GP    +    +L  + +SNN+  G IP+E+GD+ P L  
Sbjct:   316 EI-SNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDI-PRLGL 373

Query:   279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGH 338
             L++S N L GSIP SFGN+  L+ L +  N L+G +P+ L   C+NLE L LS+N+L G 
Sbjct:   374 LDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGK-CINLEILDLSHNNLTGT 432

Query:   339 M-FSRNFNLTNLK-WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTR 396
             +      NL NLK +L L  NH  G IP  LSK  ++  + L++N LSG IP  LG+   
Sbjct:   433 IPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIA 492

Query:   397 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLH 455
             L+H+ + +N     +P    QL +L+ LD+S N ++G++P  F   S ++H++ S N+L 
Sbjct:   493 LEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLS 552

Query:   456 GQLK-RGTFFNYHSLVTLD--LSYNRLNGSI 483
             G +  +G+F    S +T++  L  + L GSI
Sbjct:   553 GNVSDKGSF----SKLTIESFLGDSLLCGSI 579

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181071 annotation not avaliable (645 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	590
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  189 bits (482), Expect = 3e-51
 Identities = 165/497 (33%), Positives = 262/497 (52%), Gaps = 24/497 (4%)

Query: 41  ISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSL 100
           I  +  SL+YL+LS++    N +  + RG  S+ +L+ L + NN L G +P  + + +SL
Sbjct: 113 IFTTSSSLRYLNLSNN----NFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF--QIPISLEPLFNHSRLKVFWAKNN 158
           ++L +  N L G I +S L +LTS+E L L++N    QIP  L  + +   LK  +   N
Sbjct: 167 KVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYN 222

Query: 159 EINAEI-TQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFP 217
            ++ EI  +   LT+    L+ L L      G I P  L +  +L+Y+ L   K++G  P
Sbjct: 223 NLSGEIPYEIGGLTS----LNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 218 TWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF 277
             +  +   L SL L ++SL+G     +   + L +L + +NNF G IPV +   LP L 
Sbjct: 278 PSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQ 335

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG 337
            L +  N   G IP + G    L +LD++ N LTGEIPE L     NL  L L +NSLEG
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEG 394

Query: 338 HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397
            +        +L+ ++L+ N F GE+P   +K  ++  L ++NN+L G I     ++  L
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHG 456
           Q + + +N   G +P +      L+ LD+S N  SG++P     LS +  + LS+N L G
Sbjct: 455 QMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 457 QLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 516
           ++      +   LV+LDLS+N+L+G I      +  LS L L  N L GE+P  L  +  
Sbjct: 514 EIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 517 LQLLDLSNNNLHGPIPP 533
           L  +++S+N+LHG +P 
Sbjct: 573 LVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  179 bits (455), Expect = 1e-47
 Identities = 158/479 (32%), Positives = 236/479 (49%), Gaps = 15/479 (3%)

Query: 59  GTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMT-SLRILYVSSNQLTGSISSS 117
           G N S  +   +  L ++Q + + NN L G +P  +   + SLR L +S+N  TGSI   
Sbjct: 78  GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG 137

Query: 118 PLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL 177
            + +L   E L LSNN     I  + + + S LKV     N +  +I   P+       L
Sbjct: 138 SIPNL---ETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKI---PNSLTNLTSL 190

Query: 178 SRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL 237
             L+L+S    G I P+ L     L+++ L +  ++GE P  +    T+L  L LV ++L
Sbjct: 191 EFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNL 248

Query: 238 AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNM 297
            GP    + + K L+ L +  N   G IP  I   L  L SL++S N+L G IP     +
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQL 307

Query: 298 KFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN 357
           + L++L + +N  TG+IP  L      L+ L L +N   G +        NL  L L  N
Sbjct: 308 QNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 417
           +  GEIP+ L     L  L L +NSL G IP+ LG    L+ + +  N   G +P EF +
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 418 LDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY 476
           L  +  LDIS+NN+ G + S    + S++ + L++N   G L     F    L  LDLS 
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSR 484

Query: 477 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF 535
           N+ +G++   +  LS+L  L L  N L GE+P +L    +L  LDLS+N L G IP  F
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (406), Expect = 2e-41
 Identities = 145/444 (32%), Positives = 206/444 (46%), Gaps = 15/444 (3%)

Query: 96  NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWA 155
           N + +  + +S   ++G ISS+ +  L  I+ ++LSNN    PI  +     S L+    
Sbjct: 67  NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 156 KNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGE 215
            NN     I   P  + PN  L  L LS+    G I P  +     L+ +DL    + G+
Sbjct: 126 SNNNFTGSI---PRGSIPN--LETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGK 179

Query: 216 FPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPG 275
            P  L  N T+LE L L ++ L G     +   K L+ + +  NN  G IP EIG  L  
Sbjct: 180 IPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTS 237

Query: 276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
           L  L++  N L G IPSS GN+K LQ L +  N+L+G IP  +      L  L LS+NSL
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSL 296

Query: 336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395
            G +      L NL+ L L  N+F G+IP +L+    L+ L L +N  SG IP+ LG   
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 396 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNML 454
            L  + +  N+L G IP   C    L  L +  N++ G +P       S+  V L  N  
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 455 HGQLKRGTFFNYHSLVT-LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK 513
            G+L     F    LV  LD+S N L G I+     +  L  L L  N   G +P     
Sbjct: 417 SGELPSE--FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFG 473

Query: 514 LNQLQLLDLSNNNLHGPIPPCFDN 537
             +L+ LDLS N   G +P    +
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGS 497

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (353), Expect = 1e-34
 Identities = 123/385 (31%), Positives = 192/385 (49%), Gaps = 38/385 (9%)

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           L +L +LQ L++Y N L G +P  + ++  L  L +S N L+G I    ++ L ++E LH
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILH 314

Query: 130 LSNNHF--QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYG 187
           L +N+F  +IP++L  L    RL+V    +N+ + EI                       
Sbjct: 315 LFSNNFTGKIPVALTSL---PRLQVLQLWSNKFSGEI----------------------- 348

Query: 188 DGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS 247
                PK L   ++L  +DLS   + GE P  L  ++ NL  L L ++SL G     + +
Sbjct: 349 -----PKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
            + LR + + +N+F G +P E    LP ++ L+IS N L G I S   +M  LQ+L +  
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSL 367
           N+  G +P+  + G   LE L LS N   G +  +  +L+ L  L+L  N   GEIP  L
Sbjct: 462 NKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 368 SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 427
           S C  L  L L++N LSG IP     +  L  + + +N L G IP     ++ L  ++IS
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 428 DNNISGSLPSCFHPLSIEHVHLSKN 452
            N++ GSLPS    L+I    ++ N
Sbjct: 580 HNHLHGSLPSTGAFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 9e-11
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 227 LESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNAL 286
           ++ L L N  L G     I   + L+ +++S N+ RG+IP  +G +   L  L++S N+ 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSF 478

Query: 287 DGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHL 318
           +GSIP S G +  L++L++  N L+G +P  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 26/114 (22%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
           L + N   RG IP +I   L  L S+N+S N++ G+IP S G++  L++LD++ N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 314 IPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSL 367
           IPE L                           LT+L+ L L GN   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 9e-10
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 19/127 (14%)

Query: 344 FNLTNLKW----LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQH 399
           F+ T  KW    L L+     G IP  +SK   L+ + L+ NS+ G IP  LG++T L+ 
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 400 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLK 459
           + +  N   G IP    QL  L+IL+++ N++SG +P+                L G+L 
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA---------------LGGRLL 515

Query: 460 RGTFFNY 466
               FN+
Sbjct: 516 HRASFNF 522

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 33/85 (38%), Positives = 44/85 (51%)

Query: 328 LALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMI 387
           L L N  L G + +    L +L+ + L GN   G IP SL     LE L L+ NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 388 PRWLGNLTRLQHIMMPKNHLEGPIP 412
           P  LG LT L+ + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
           I+ + L    L G +          L +++LS N + G+I   +  ++ L  L L +N+ 
Sbjct: 420 IDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 546
            G +P  L +L  L++L+L+ N+L G +P       LH +  N
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           L HLQ + +  N +RG++P  + ++TSL +L +S N   GSI  S L  LTS+  L+L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 133 NHF--QIPISL 141
           N    ++P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 26/60 (43%), Positives = 29/60 (48%)

Query: 468 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
           +L +LDLS NRL         GL  L  L L  NNL    P     L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 443 SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNN 502
           +++ + LS N L   +  G F    +L  LDLS N L     +   GL  L  L L  NN
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 503 L 503
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 227 LESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNAL 286
           L+S+ L  +S+ G     + S   L +LD+S N+F G IP  +G  L  L  LN++ N+L
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSL 502

Query: 287 DGSIPSSFG 295
            G +P++ G
Sbjct: 503 SGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG---HMFSRNFNLTNLKWLQLEG 356
           L+ LD++NN+LT  IP+    G  NL+ L LS N+L       FS    L +L+ L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 357 NHF 359
           N+ 
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 22/249 (8%)

Query: 284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN 343
           N  D ++ S   N   L L   T   L            ++L+ L+ S  S      +  
Sbjct: 36  NFPDSNLESVAVNRLALNLSSNTLLLL-----PSSLSRLLSLDLLSPSGISSLDGSENLL 90

Query: 344 FNLTNLKWLQLEGNHFVGEIP--QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM 401
            NL  L  L L  N     I     L+    L+    N   +  +I     NL  L    
Sbjct: 91  -NLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN---MLHGQL 458
                L  P+      L  L+ LD+S N++S       +  ++ ++ LS N    L  ++
Sbjct: 150 NKIESLPSPL----RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI 205

Query: 459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQ 518
           +  +     +L  LDLS N +   +   +  L  LS L L +N LE ++P  +  L+ L+
Sbjct: 206 ELLS-----ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258

Query: 519 LLDLSNNNL 527
            LDLSNN +
Sbjct: 259 TLDLSNNQI 267

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 54/243 (22%), Positives = 83/243 (34%), Gaps = 69/243 (28%)

Query: 311 TGEIPEHLAV------GCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP 364
           TG IP  L            L+ L LS+N+L                   +G   +    
Sbjct: 63  TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL-----------------GPDGCGVL---- 101

Query: 365 QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL 424
           +SL +   L+ L LNNN L     R L     L+ +                    L+ L
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLA--KGLKDLPPA-----------------LEKL 142

Query: 425 DISDNNISGSLPSCF-------HPLSIEHVHLSKNMLHGQ----LKRGTFFNYHSLVTLD 473
            +  N + G+  SC            ++ ++L+ N +       L  G      +L  LD
Sbjct: 143 VLGRNRLEGA--SCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLD 199

Query: 474 LSYNRLN----GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK-----LNQLQLLDLSN 524
           L+ N L      ++++ +  L  L  L LG NNL       L          L  L LS 
Sbjct: 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259

Query: 525 NNL 527
           N++
Sbjct: 260 NDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
           SL++S N L      +F  +  L++LD++ N LT  I      G  +L  L LS N+L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
            L+ LD+SNN     IP      LP L  L++S N L    P +F  +  L+ LD++ N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 310 L 310
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	590
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
PLN03150	623	hypothetical protein; Provisional	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
PLN03150	623	hypothetical protein; Provisional	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.35
KOG4341	483	consensus F-box protein containing LRR [General fu	98.28
KOG4341	483	consensus F-box protein containing LRR [General fu	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.53
KOG4308	478	consensus LRR-containing protein [Function unknown	92.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.58
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.96
smart00370	26	LRR Leucine-rich repeats, outliers.	89.96
KOG4308	478	consensus LRR-containing protein [Function unknown	89.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.07
smart00370	26	LRR Leucine-rich repeats, outliers.	87.07
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.45

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.4e-57  Score=510.76  Aligned_cols=529  Identities=30%  Similarity=0.417  Sum_probs=321.3

Q ss_pred             CCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEe
Q 007762            2 SSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYI   81 (590)
Q Consensus         2 ~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L   81 (590)
                      ++|++.|.+| .+|..+++|++|++++|  .+.+.+|..++..+++|++|++++|.+++   .++.   ..+++|++|+|
T Consensus        77 ~~~~i~~~~~-~~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~---~~l~~L~~L~L  147 (968)
T PLN00113         77 SGKNISGKIS-SAIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTG---SIPR---GSIPNLETLDL  147 (968)
T ss_pred             cCCCccccCC-hHHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCcccc---ccCc---cccCCCCEEEC
Confidence            3555566555 45666666666666666  44555565555456666666666666544   3332   33555666666


Q ss_pred             ecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCccc
Q 007762           82 YNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEIN  161 (590)
Q Consensus        82 ~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~  161 (590)
                      ++|.+.+..|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ 
T Consensus       148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l-  224 (968)
T PLN00113        148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNL-  224 (968)
T ss_pred             cCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCcc-
Confidence            66666555566666666666666666665545554 45566666666666665554333 3455555666665555544 


Q ss_pred             ccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCC
Q 007762          162 AEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF  241 (590)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  241 (590)
                                                 .+.+|..+..+++|++|++++|.+.+.+|..+ .++++|+.|++++|.+.+..
T Consensus       225 ---------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        225 ---------------------------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             ---------------------------CCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccC
Confidence                                       44455556666666666666666655555553 56666666666666666655


Q ss_pred             cCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcC
Q 007762          242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVG  321 (590)
Q Consensus       242 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  321 (590)
                      +..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+. .
T Consensus       277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~  354 (968)
T PLN00113        277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-K  354 (968)
T ss_pred             chhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-C
Confidence            555666666666666666666555555544 56666666666666666666666666666666666666655555443 3


Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.|+
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            56666666666666665666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG  481 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  481 (590)
                      +++|.+.+.++..+..+++|+.|++++|.+.+..|..+...+|+.|++++|.+.+.++.. +.++++|+.|++++|.+.+
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQLKLSENKLSG  513 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh-hhhhhccCEEECcCCccee
Confidence            666666666666566666666666666666666666555566666666666665555544 5566666666666666666


Q ss_pred             CccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccc----cCCCCCCCccce-
Q 007762          482 SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESY----SNSSSPNKQFEI-  556 (590)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~----~~~~~~~~~~~~-  556 (590)
                      .+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+..++.+...    |...+.+|.... 
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  593 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF  593 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence            666666666666666666666666666666666666666666666666666666555433322    333332332211 


Q ss_pred             -eccccCCCCCCCCCccc
Q 007762          557 -FFFIQGPQGHPRLATLV  573 (590)
Q Consensus       557 -~~~~~~~~~np~~~~~~  573 (590)
                       .+...++.|||.+|+..
T Consensus       594 ~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        594 LAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccChhhhcCCccccCCc
Confidence             12345678999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-53  Score=482.83  Aligned_cols=490  Identities=31%  Similarity=0.449  Sum_probs=432.7

Q ss_pred             CCCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEE
Q 007762            1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELY   80 (590)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~   80 (590)
                      +++|++.|.+|.+.|.++++|++|++++|  .+.+.+|..   .+++|++|+|++|.+.+   .++ ..+.++++|++|+
T Consensus       100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n--~l~~~~p~~---~l~~L~~L~Ls~n~~~~---~~p-~~~~~l~~L~~L~  170 (968)
T PLN00113        100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNN--NFTGSIPRG---SIPNLETLDLSNNMLSG---EIP-NDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCccCCcCChHHhccCCCCCEEECcCC--ccccccCcc---ccCCCCEEECcCCcccc---cCC-hHHhcCCCCCEEE
Confidence            46899999999888889999999999999  667777753   67899999999999876   444 6899999999999


Q ss_pred             eecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcc
Q 007762           81 IYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI  160 (590)
Q Consensus        81 L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~  160 (590)
                      +++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+.++ ..+.++++|+.|++++|.+
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCcee
Confidence            999999989999999999999999999999877777 78999999999999999886555 5678888888888877754


Q ss_pred             cccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCC
Q 007762          161 NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGP  240 (590)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  240 (590)
                      .                            +.+|..+..+++|++|++++|.+.+.+|..+ .++++|+.|++++|.+.+.
T Consensus       249 ~----------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        249 T----------------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             c----------------------------cccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccC
Confidence            3                            3466778888899999999999887888775 6889999999999998888


Q ss_pred             CcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhc
Q 007762          241 FRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV  320 (590)
Q Consensus       241 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  320 (590)
                      .+..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+. 
T Consensus       300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-  377 (968)
T PLN00113        300 IPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-  377 (968)
T ss_pred             CChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-
Confidence            8888888999999999999988888877765 88999999999999888888899999999999999999878887765 


Q ss_pred             CCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEE
Q 007762          321 GCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHI  400 (590)
Q Consensus       321 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  400 (590)
                      .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..++.|+.|++++|.+.+.++..+..+++|+.|
T Consensus       378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  457 (968)
T PLN00113        378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML  457 (968)
T ss_pred             CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence            47889999999999988888888889999999999999988888888999999999999999998888888889999999


Q ss_pred             ECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcC
Q 007762          401 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL  479 (590)
Q Consensus       401 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l  479 (590)
                      ++++|.+.+.+|..+ ..++|+.|++++|.+++..|..+. +++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+
T Consensus       458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l  535 (968)
T PLN00113        458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQL  535 (968)
T ss_pred             ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-HcCccCCCEEECCCCcc
Confidence            999999888777765 458899999999999888876654 778999999999998888876 88899999999999999


Q ss_pred             CCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccc
Q 007762          480 NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC  534 (590)
Q Consensus       480 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  534 (590)
                      ++.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..
T Consensus       536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            9999999999999999999999999999999999999999999999999999965

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-38  Score=304.50  Aligned_cols=387  Identities=23%  Similarity=0.258  Sum_probs=286.3

Q ss_pred             CcEEecCCCCCCCCCCCCCcccccCCCC--CcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCC-CC
Q 007762           48 LKYLSLSDSTLGTNSSKILDRGLCSLVH--LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHL-TS  124 (590)
Q Consensus        48 L~~L~L~~~~~~~~~~~~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l-~~  124 (590)
                      -+.|+.++..+..    +.-..+..+--  -+.|++++|++.+..+..|.++++|+++++..|.++ .||.  +++. .+
T Consensus        54 ~~lldcs~~~lea----~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sgh  126 (873)
T KOG4194|consen   54 TRLLDCSDRELEA----IDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGH  126 (873)
T ss_pred             ceeeecCcccccc----ccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccc
Confidence            3456666666533    21122233222  344777777777777777777777777777777777 7776  4443 34


Q ss_pred             CcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccE
Q 007762          125 IEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEY  204 (590)
Q Consensus       125 L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  204 (590)
                      |+.|++.+|.+. .+.                                                    .+.+..++.|+.
T Consensus       127 l~~L~L~~N~I~-sv~----------------------------------------------------se~L~~l~alrs  153 (873)
T KOG4194|consen  127 LEKLDLRHNLIS-SVT----------------------------------------------------SEELSALPALRS  153 (873)
T ss_pred             eeEEeeeccccc-ccc----------------------------------------------------HHHHHhHhhhhh
Confidence            777777776654 222                                                    233445567777


Q ss_pred             EEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCc
Q 007762          205 VDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN  284 (590)
Q Consensus       205 L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n  284 (590)
                      ||+|.|.+. +++..-|..-.++++|++++|.|+......|..+.+|..|.++.|+++ .+|...++.+++|+.|+|..|
T Consensus       154 lDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  154 LDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence            777777766 555544445567888888888888877778888889999999999998 888888877999999999999


Q ss_pred             eecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCC
Q 007762          285 ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP  364 (590)
Q Consensus       285 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  364 (590)
                      .+.-.-.-.|+++++|+.|.+..|.+. .+.+..|..+.++++|++..|++......++.++++|+.|+++.|.+....+
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            887444667889999999999999998 8888888889999999999999988777888889999999999999998888


Q ss_pred             ccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC----C
Q 007762          365 QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF----H  440 (590)
Q Consensus       365 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~  440 (590)
                      ..+..+++|++|++++|.++...+..|..+..|++|.|++|++...-...|..+++|+.||++.|.+...+.+.-    .
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            889999999999999999998888889999999999999999987777788899999999999998875544321    1


Q ss_pred             CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECc
Q 007762          441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG  499 (590)
Q Consensus       441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~  499 (590)
                      +++|+.|++.||++ +.|+..+|.+++.|+.|||.+|.|..+.|+.|..+ .|++|.++
T Consensus       391 l~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             chhhhheeecCcee-eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            44555555555555 35555555555555555555555555555555555 55555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-37  Score=299.59  Aligned_cols=360  Identities=26%  Similarity=0.298  Sum_probs=317.1

Q ss_pred             cceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEc
Q 007762          177 LSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDI  256 (590)
Q Consensus       177 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  256 (590)
                      -+.|++ +.+.+...-+..|.++++|+++.+..|.++ .+|... .-..+|+.|++.+|.|+......+..++.|++||+
T Consensus        80 t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            334444 444455556678889999999999999997 888743 34456999999999999988888999999999999


Q ss_pred             cCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCC
Q 007762          257 SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLE  336 (590)
Q Consensus       257 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~  336 (590)
                      +.|.++ +++...+..-.++++|+|++|.++..-...|..+.+|..|.++.|+++ .+|...|..+++|+.|++..|.|.
T Consensus       157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence            999998 777665554579999999999999888888999999999999999999 999999988999999999999987


Q ss_pred             CccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccC
Q 007762          337 GHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC  416 (590)
Q Consensus       337 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  416 (590)
                      -.-...|.++++|+.|.+..|.+.......|-.+.++++|+++.|++...-..++.+++.|++|+|+.|.+..+-++++.
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            55466788999999999999999988888999999999999999999988888999999999999999999988899999


Q ss_pred             CCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccc---cccccCC
Q 007762          417 QLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD---WVDGLSQ  492 (590)
Q Consensus       417 ~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~l~~  492 (590)
                      .+++|+.|++++|+++...++.+. +..|++|+|++|.+ ..+...+|..+.+|+.|||++|.+...+.+   .|.++++
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            999999999999999988888776 67899999999999 578888899999999999999998865543   4788999


Q ss_pred             CCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccc
Q 007762          493 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (590)
Q Consensus       493 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~  542 (590)
                      |+.|.+.+|++.......|.+++.|+.|||.+|.|..+-|+.|..+.+.+
T Consensus       394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~  443 (873)
T KOG4194|consen  394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE  443 (873)
T ss_pred             hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence            99999999999966567899999999999999999988899998875443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-38  Score=291.90  Aligned_cols=455  Identities=23%  Similarity=0.336  Sum_probs=305.0

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT  123 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~  123 (590)
                      .+..|.+|+++.|++..    .| .+++.+..++.++.+.|++. ++|+.+..+.+|++++++.|.+. +++. .+..+-
T Consensus        66 nL~~l~vl~~~~n~l~~----lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~-~i~~~~  137 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQ----LP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPD-SIGRLL  137 (565)
T ss_pred             cccceeEEEeccchhhh----CC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCc-hHHHHh
Confidence            44444555555544432    22 34444444444555555444 44444444445555555544444 3333 344444


Q ss_pred             CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762          124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE  203 (590)
Q Consensus       124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  203 (590)
                      .|+.++..+|++. ..+ ..+..+.++..+.+.+|++..-....    .....+++++.  +.+.-+.+|..++.+.+|.
T Consensus       138 ~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~l~~~~----i~m~~L~~ld~--~~N~L~tlP~~lg~l~~L~  209 (565)
T KOG0472|consen  138 DLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKALPENH----IAMKRLKHLDC--NSNLLETLPPELGGLESLE  209 (565)
T ss_pred             hhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhhCCHHH----HHHHHHHhccc--chhhhhcCChhhcchhhhH
Confidence            4444444444443 111 22333444444444444332211111    00113334433  2333345788899999999


Q ss_pred             EEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccC
Q 007762          204 YVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM  283 (590)
Q Consensus       204 ~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~  283 (590)
                      .|++..|++. .+|+  |.+|..|.+++++.|.+.-........++++..||+.+|+++ ++|..++- +.+|++||+++
T Consensus       210 ~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSN  284 (565)
T KOG0472|consen  210 LLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSN  284 (565)
T ss_pred             HHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccC
Confidence            9999999987 7774  589999999999999887655555668899999999999998 89998876 78999999999


Q ss_pred             ceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCC--CCcEEE-------ccCCc---C-CCc-cC---ccccCc
Q 007762          284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCV--NLEYLA-------LSNNS---L-EGH-MF---SRNFNL  346 (590)
Q Consensus       284 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~-------l~~n~---i-~~~-~~---~~~~~l  346 (590)
                      |.++ .+|..++++ +|+.|-+.+|.+. ++-..+...-+  -|++|.       ++...   - ... .+   ......
T Consensus       285 N~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~  361 (565)
T KOG0472|consen  285 NDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI  361 (565)
T ss_pred             Cccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence            9999 788889999 9999999999876 55444332111  122221       11110   0 000 01   111234


Q ss_pred             cccCceeccCccccccCCccccCCC---CCCEEEccCCcccccCccccCCCCCccE-EECCCCcCcCCCCcccCCCCCCc
Q 007762          347 TNLKWLQLEGNHFVGEIPQSLSKCF---VLEGLFLNNNSLSGMIPRWLGNLTRLQH-IMMPKNHLEGPIPVEFCQLDWLQ  422 (590)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~n~~~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~  422 (590)
                      .+.+.|++++-+++ .+|.......   -...++++.|++. .+|..+..+..+.+ +.+++|.+ +..|..++.+++|.
T Consensus       362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt  438 (565)
T KOG0472|consen  362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLT  438 (565)
T ss_pred             hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcce
Confidence            57788888888887 4553332333   3789999999998 66776766665554 45555554 47888899999999


Q ss_pred             EEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCc
Q 007762          423 ILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNN  502 (590)
Q Consensus       423 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  502 (590)
                      .|++++|.+...+...+....|+.++++.|.+ ..+|.. +.....++.+-.++|++....|+.+.++.+|..|||.+|.
T Consensus       439 ~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  439 FLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPEC-LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             eeecccchhhhcchhhhhhhhhheeccccccc-ccchHH-HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            99999999986666666777899999999998 677876 6667778888888999997777779999999999999999


Q ss_pred             ccCCCcccccCCCCCCEEECcCCccC
Q 007762          503 LEGEVPVQLCKLNQLQLLDLSNNNLH  528 (590)
Q Consensus       503 l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (590)
                      +. .+|..+++|.+|++|++++|++.
T Consensus       517 lq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  517 LQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hh-hCChhhccccceeEEEecCCccC
Confidence            98 88999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-34  Score=292.59  Aligned_cols=475  Identities=27%  Similarity=0.269  Sum_probs=347.4

Q ss_pred             cccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762            8 GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR   87 (590)
Q Consensus         8 ~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~   87 (590)
                      ..||.+.+.+-. +..|+++.|-  +. ..|-.+.++.-+|++|++++|.+..    .| ..+..+.+|+.|+++.|.|.
T Consensus        11 ~~ip~~i~~~~~-~~~ln~~~N~--~l-~~pl~~~~~~v~L~~l~lsnn~~~~----fp-~~it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen   11 ELIPEQILNNEA-LQILNLRRNS--LL-SRPLEFVEKRVKLKSLDLSNNQISS----FP-IQITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             cccchhhccHHH-HHhhhccccc--cc-cCchHHhhheeeeEEeecccccccc----CC-chhhhHHHHhhcccchhhHh
Confidence            467766665555 8889988883  22 3333333355569999999998864    44 57788889999999999888


Q ss_pred             ccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762           88 GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS  167 (590)
Q Consensus        88 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~  167 (590)
                       ..|.+..++.+|+++.|.+|.+. ..|. .+..+.+|++|++++|.+. .+| ..+..+..+..+.+++|.......+ 
T Consensus        82 -~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~lg~-  155 (1081)
T KOG0618|consen   82 -SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQRLGQ-  155 (1081)
T ss_pred             -hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhhhcc-
Confidence             67888888999999999999887 7777 7888999999999999876 444 3566677777777777722222111 


Q ss_pred             CCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCC
Q 007762          168 PSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS  247 (590)
Q Consensus       168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  247 (590)
                             ..++.+++ ..+...+.++.....+..  .|++.+|.+. ...   +.++++|+.+....|++.....    .
T Consensus       156 -------~~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~  217 (1081)
T KOG0618|consen  156 -------TSIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----S  217 (1081)
T ss_pred             -------ccchhhhh-hhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----c
Confidence                   13555555 445555555555555544  6999999876 222   4688899999888887765321    4


Q ss_pred             CCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcE
Q 007762          248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEY  327 (590)
Q Consensus       248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  327 (590)
                      -++|+.|+.++|.++ .......  ..+|++++++.+.++ .+|+++..+.+|+.++...|.+. .+|..++. ..+|+.
T Consensus       218 g~~l~~L~a~~n~l~-~~~~~p~--p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~  291 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLT-TLDVHPV--PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVS  291 (1081)
T ss_pred             CcchheeeeccCcce-eeccccc--cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHH
Confidence            568889999999887 2222221  458999999999998 67799999999999999999997 88888774 788999


Q ss_pred             EEccCCcCCCccCccccCccccCceeccCccccccCCccccCCC-CCCEEEccCCcccccCccccCCCCCccEEECCCCc
Q 007762          328 LALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH  406 (590)
Q Consensus       328 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  406 (590)
                      +.+..|.+.. +|.....+..|++|++..|.+....+..+.-.. +++.++.+.+++.......=.....|+.|.+.+|.
T Consensus       292 l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  292 LSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             HHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence            9999998874 566667789999999999998733333333332 36777777777763332222345678888999998


Q ss_pred             CcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccc
Q 007762          407 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD  485 (590)
Q Consensus       407 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  485 (590)
                      +++.....+.+..+|+.|++++|++...+...+. +..|+.|++|||++ ..+|.. +..+..|++|...+|++. ..| 
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~t-va~~~~L~tL~ahsN~l~-~fP-  446 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDT-VANLGRLHTLRAHSNQLL-SFP-  446 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHH-HHhhhhhHHHhhcCCcee-ech-
Confidence            8877777788888999999999988744444433 66788889999988 477765 778888999988888887 667 


Q ss_pred             cccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCc
Q 007762          486 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNN  526 (590)
Q Consensus       486 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  526 (590)
                      .+..++.|+.+|++.|+++...-......|+|++||+++|.
T Consensus       447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            57788899999999888885443333344789999999987

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=4.1e-35  Score=270.54  Aligned_cols=451  Identities=26%  Similarity=0.339  Sum_probs=339.9

Q ss_pred             CCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCC
Q 007762           46 PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSI  125 (590)
Q Consensus        46 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L  125 (590)
                      ..|+.+.+++|.+..     ....+.++..|.+|++++|++. ..|++++.+..++.++.+.|++. .+|. .+..+.+|
T Consensus        45 v~l~~lils~N~l~~-----l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-----LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL  116 (565)
T ss_pred             cchhhhhhccCchhh-----ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence            458899999999854     3368899999999999999998 88999999999999999999998 8888 78889999


Q ss_pred             cEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEE
Q 007762          126 EELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYV  205 (590)
Q Consensus       126 ~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  205 (590)
                      +.+++++|.+.. .+ +.++.+..+..++..+|.+.                             ..|..+..+.++..+
T Consensus       117 ~~l~~s~n~~~e-l~-~~i~~~~~l~dl~~~~N~i~-----------------------------slp~~~~~~~~l~~l  165 (565)
T KOG0472|consen  117 VKLDCSSNELKE-LP-DSIGRLLDLEDLDATNNQIS-----------------------------SLPEDMVNLSKLSKL  165 (565)
T ss_pred             hhhhccccceee-cC-chHHHHhhhhhhhccccccc-----------------------------cCchHHHHHHHHHHh
Confidence            999999998862 22 45666666776666555432                             367778888899999


Q ss_pred             EcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCce
Q 007762          206 DLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNA  285 (590)
Q Consensus       206 ~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  285 (590)
                      ++.+|++. ..|.... +++.|++|+.-.|.+.. +|..++.+.+|..|++..|++. .+| .|. ++..|++++++.|.
T Consensus       166 ~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  166 DLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQ  239 (565)
T ss_pred             hccccchh-hCCHHHH-HHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccH
Confidence            99999998 5555543 48999999998887664 6777899999999999999997 777 343 37899999999999


Q ss_pred             ecccCCcccC-CCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCC
Q 007762          286 LDGSIPSSFG-NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP  364 (590)
Q Consensus       286 ~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  364 (590)
                      +. .+|.... .+.++.+||+.+|+++ ++|++++. +.+|++||+++|.+++ .|..++++ .|+.|.+.+|++...-.
T Consensus       240 i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  240 IE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             HH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHH
Confidence            98 6676554 8899999999999998 99999875 8899999999999986 67888888 89999999887642110


Q ss_pred             ccc-----------------------------------------cCCCCCCEEEccCCcccccCccccCC--CCCccEEE
Q 007762          365 QSL-----------------------------------------SKCFVLEGLFLNNNSLSGMIPRWLGN--LTRLQHIM  401 (590)
Q Consensus       365 ~~l-----------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~  401 (590)
                      +.+                                         ....+.+.|+++.-+++....+.|..  -.-.+..+
T Consensus       315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn  394 (565)
T KOG0472|consen  315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN  394 (565)
T ss_pred             HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence            000                                         11123444555554444222222321  11245555


Q ss_pred             CCCCcCcCCCCcccCCCCCCc-EEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQ-ILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN  480 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (590)
                      ++.|++. .+|..+..+..+. .+.+++|.+.......-..++|..|++++|.+ ..+|.. +..+..|+.|+++.|.+.
T Consensus       395 fskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e-~~~lv~Lq~LnlS~NrFr  471 (565)
T KOG0472|consen  395 FSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL-NDLPEE-MGSLVRLQTLNLSFNRFR  471 (565)
T ss_pred             cccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh-hhcchh-hhhhhhhheecccccccc
Confidence            5666555 4444444443332 23444444432222222377899999999988 688887 777888999999999998


Q ss_pred             CCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCCC
Q 007762          481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPN  551 (590)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~  551 (590)
                       .+|.++..+..++.+-.++|++....|..+.++.+|..||+.+|.+. .+|+.+.+++-..-.....+|.
T Consensus       472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence             88998888888888888889998777777999999999999999998 7899999887665555555553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-32  Score=278.47  Aligned_cols=469  Identities=25%  Similarity=0.249  Sum_probs=333.6

Q ss_pred             CCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCc
Q 007762           13 QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPW   92 (590)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~   92 (590)
                      +..+++-+|+.|+++++.+   +..|..+. .+.+|+.|+++.|.|..    .+ .+..++.+|++++|.+|.+. .+|.
T Consensus        39 ~~~~~~v~L~~l~lsnn~~---~~fp~~it-~l~~L~~ln~s~n~i~~----vp-~s~~~~~~l~~lnL~~n~l~-~lP~  108 (1081)
T KOG0618|consen   39 EFVEKRVKLKSLDLSNNQI---SSFPIQIT-LLSHLRQLNLSRNYIRS----VP-SSCSNMRNLQYLNLKNNRLQ-SLPA  108 (1081)
T ss_pred             HHhhheeeeEEeecccccc---ccCCchhh-hHHHHhhcccchhhHhh----Cc-hhhhhhhcchhheeccchhh-cCch
Confidence            3556677799999999976   78888888 88999999999999854    55 78899999999999999888 8999


Q ss_pred             cccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCC
Q 007762           93 CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTA  172 (590)
Q Consensus        93 ~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~  172 (590)
                      .+..+.+|++|+++.|.+. .+|. .+..++.+..+..++|...     ..++... ++.+++..+.+.........   
T Consensus       109 ~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~-----~~lg~~~-ik~~~l~~n~l~~~~~~~i~---  177 (1081)
T KOG0618|consen  109 SISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKI-----QRLGQTS-IKKLDLRLNVLGGSFLIDIY---  177 (1081)
T ss_pred             hHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhh-----hhhcccc-chhhhhhhhhcccchhcchh---
Confidence            9999999999999999997 8887 7888899999999988322     1222222 66666666655443332211   


Q ss_pred             CCcccc-eEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcc
Q 007762          173 PNFQLS-RLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRL  251 (590)
Q Consensus       173 ~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  251 (590)
                         .++ .+++ ..+.+.   ...+..+.+|+.|....|.+. .+.    ...++++.|+...|.+.......  ...+|
T Consensus       178 ---~l~~~ldL-r~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~p--~p~nl  243 (1081)
T KOG0618|consen  178 ---NLTHQLDL-RYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVHP--VPLNL  243 (1081)
T ss_pred             ---hhheeeec-ccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecccc--ccccc
Confidence               233 3666 333332   233556777788877777665 222    24578888888888777433322  34578


Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc
Q 007762          252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS  331 (590)
Q Consensus       252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  331 (590)
                      ++++++.+.+. .+|.|+.. +++|+.++..+|.++ .+|..+..+.+|+.+.+..|++. .+|.... +...|++|++.
T Consensus       244 ~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~  318 (1081)
T KOG0618|consen  244 QYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQ  318 (1081)
T ss_pred             eeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeeh
Confidence            88888888887 77777766 788888888888886 67777778888888888888877 6666554 37788888888


Q ss_pred             CCcCCCccCccccCcc-ccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCC
Q 007762          332 NNSLEGHMFSRNFNLT-NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP  410 (590)
Q Consensus       332 ~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  410 (590)
                      .|++.......+.-.. .++.|..+.+++.......=...+.|+.|++.+|.+++.....+.+..+|+.|+|++|++...
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            8887654443333222 256666666665522211122345677788888888877767777888888888888887744


Q ss_pred             CCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC-ccccccc
Q 007762          411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS-ISDWVDG  489 (590)
Q Consensus       411 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~  489 (590)
                      ....+.++..|+.|++++|+++........+..|++|...+|.+ ...| . +..++.|+.+|+|.|+++.. +|.....
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l-~~fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p~  475 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL-LSFP-E-LAQLPQLKVLDLSCNNLSEVTLPEALPS  475 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce-eech-h-hhhcCcceEEecccchhhhhhhhhhCCC
Confidence            34457778888888888888875554444567788888888877 3555 3 77889999999999999853 3433333


Q ss_pred             cCCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762          490 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  525 (590)
Q Consensus       490 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (590)
                       ++|++||+++|.-....-+.|..+.++...++.-|
T Consensus       476 -p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  476 -PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             -cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             89999999999755455556666666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.4e-32  Score=264.38  Aligned_cols=370  Identities=23%  Similarity=0.303  Sum_probs=234.4

Q ss_pred             CCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCc
Q 007762           47 SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE  126 (590)
Q Consensus        47 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~  126 (590)
                      -.+-.++++|.+++   ...+.+...+..++.|.|..+++. .+|+.++.|.+|++|.+++|++. .+-. .+..++.|+
T Consensus         8 FVrGvDfsgNDFsg---~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LR   81 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSG---DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLR   81 (1255)
T ss_pred             eeecccccCCcCCC---CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhH
Confidence            34555566665554   233355555666666666666655 56666666666666666666665 4433 455566666


Q ss_pred             EEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEE
Q 007762          127 ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVD  206 (590)
Q Consensus       127 ~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  206 (590)
                      .+.+..|.+..+                                                    -+|..+..+..|..||
T Consensus        82 sv~~R~N~LKns----------------------------------------------------GiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   82 SVIVRDNNLKNS----------------------------------------------------GIPTDIFRLKDLTILD  109 (1255)
T ss_pred             HHhhhccccccC----------------------------------------------------CCCchhcccccceeee
Confidence            666665554311                                                    1455566677777888


Q ss_pred             cCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCcee
Q 007762          207 LSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNAL  286 (590)
Q Consensus       207 ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~  286 (590)
                      +|+|++. +.|..+ ...+++-.|++++|.|..+...-+.++..|-.||+++|++. .+|..                  
T Consensus       110 LShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ------------------  168 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ------------------  168 (1255)
T ss_pred             cchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHH------------------
Confidence            8888776 666654 45555555555555554433333334444444444444443 44444                  


Q ss_pred             cccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCC-CccCccccCccccCceeccCccccccCCc
Q 007762          287 DGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLE-GHMFSRNFNLTNLKWLQLEGNHFVGEIPQ  365 (590)
Q Consensus       287 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  365 (590)
                             ++.+..|++|++++|.+. ...-.....+.+|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. .+|+
T Consensus       169 -------~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  169 -------IRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             -------HHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence                   444444444444444332 111011112344555555544322 345667777888888899888887 7888


Q ss_pred             cccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCccc
Q 007762          366 SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIE  445 (590)
Q Consensus       366 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~  445 (590)
                      .+.++++|+.|++++|+++ .+....+.+.+|++|+++.|+++ .+|.+++++++|+.|.+.+|+++.            
T Consensus       240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F------------  305 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF------------  305 (1255)
T ss_pred             HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc------------
Confidence            8888999999999999988 45556777889999999999998 789999999999999999998762            


Q ss_pred             EEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762          446 HVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  525 (590)
Q Consensus       446 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (590)
                                .-||.+ +..+..|+++..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.||+.+|
T Consensus       306 ----------eGiPSG-IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  306 ----------EGIPSG-IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             ----------cCCccc-hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence                      124444 666667777777777776 67777777777777777777776 66777777777777777777


Q ss_pred             ccCCCC
Q 007762          526 NLHGPI  531 (590)
Q Consensus       526 ~l~~~~  531 (590)
                      +-.-..
T Consensus       373 pnLVMP  378 (1255)
T KOG0444|consen  373 PNLVMP  378 (1255)
T ss_pred             cCccCC
Confidence            665333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=8.6e-32  Score=261.61  Aligned_cols=348  Identities=26%  Similarity=0.323  Sum_probs=300.5

Q ss_pred             CcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCC-CCchh
Q 007762          190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRG-HIPVE  268 (590)
Q Consensus       190 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~  268 (590)
                      +.+|.....+++++.|.+...++. .+|+.+ ..+.+|+.|.+..|++.... ..+..++.|+.+.+.+|.+.. -+|..
T Consensus        22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~d   98 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTD   98 (1255)
T ss_pred             CcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCch
Confidence            357888889999999999999887 889886 89999999999999888744 447789999999999998753 47888


Q ss_pred             hhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccc
Q 007762          269 IGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN  348 (590)
Q Consensus       269 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~  348 (590)
                      ++. +..|..|++++|+++ ..|..+..-+++-+|++++|+|. +||..++.++..|-.|++++|++.. +|.....+..
T Consensus        99 iF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~  174 (1255)
T KOG0444|consen   99 IFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSM  174 (1255)
T ss_pred             hcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhh
Confidence            887 889999999999999 78999999999999999999998 9999999999999999999999975 6667888999


Q ss_pred             cCceeccCccccccCCccccCCCCCCEEEccCCcc-cccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcc
Q 007762          349 LKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL-SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS  427 (590)
Q Consensus       349 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  427 (590)
                      |++|.+++|++.-.--..+..+++|+.|.+++.+- ...+|..+..+.+|..+|++.|.+. ..|+++.++++|+.|+++
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS  253 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS  253 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence            99999999987633334555677888999998653 3568889999999999999999998 789999999999999999


Q ss_pred             cCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCC-CccccccccCCCCEEECcCCcccCC
Q 007762          428 DNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG-SISDWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       428 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      +|+|++.....-.-.+|++|++|.|++ ..+|.. +..++.|+.|.+.+|+++- -+|..++.+.+|+++..++|.+. .
T Consensus       254 ~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-l  330 (1255)
T KOG0444|consen  254 GNKITELNMTEGEWENLETLNLSRNQL-TVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-L  330 (1255)
T ss_pred             cCceeeeeccHHHHhhhhhhccccchh-ccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-c
Confidence            999986555444467899999999999 466766 8999999999999999873 48899999999999999999997 8


Q ss_pred             CcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCC
Q 007762          507 VPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS  549 (590)
Q Consensus       507 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~  549 (590)
                      .|+.++.|+.|+.|.|+.|.+. .+|+.+.-++-....+...+
T Consensus       331 VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence            9999999999999999999998 78988776664444444444

>PLN03210 Resistant to P

Probab=99.91  E-value=1.4e-22  Score=229.89  Aligned_cols=346  Identities=20%  Similarity=0.214  Sum_probs=223.4

Q ss_pred             ccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCC-CcccEEEcCCCcCccccchH
Q 007762          141 LEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQ-HDLEYVDLSHMKMNGEFPTW  219 (590)
Q Consensus       141 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~  219 (590)
                      ...|.+|.+|+.|.+..+.....                      ......+|..+..+ .+|+.|.+.++.+. .+|..
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~----------------------~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~  607 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQK----------------------KEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN  607 (1153)
T ss_pred             HHHHhcCccccEEEEeccccccc----------------------ccceeecCcchhhcCcccEEEEecCCCCC-CCCCc
Confidence            34567788888887765432110                      01111233344333 35777777776664 55655


Q ss_pred             HhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCC
Q 007762          220 LLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF  299 (590)
Q Consensus       220 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~  299 (590)
                      +  ...+|+.|++.++.+.. .+..+..+++|+.|+++++.....+|. +. .+++|++|++++|.....+|..+..+++
T Consensus       608 f--~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~  682 (1153)
T PLN03210        608 F--RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNK  682 (1153)
T ss_pred             C--CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCC
Confidence            3  45677777777776654 333455677777777776643335553 22 2667777777776555567777777777


Q ss_pred             CcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEcc
Q 007762          300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  379 (590)
Q Consensus       300 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  379 (590)
                      |+.|++++|.....+|...  .+++|+.|++++|......|..   ..+|++|++++|.+. .+|..+ .+++|+.|.+.
T Consensus       683 L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~  755 (1153)
T PLN03210        683 LEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILC  755 (1153)
T ss_pred             CCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccccc
Confidence            7777777765444666544  4677777777777544433322   356777777777765 445433 46667777776


Q ss_pred             CCccc-------ccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCc
Q 007762          380 NNSLS-------GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN  452 (590)
Q Consensus       380 ~n~~~-------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  452 (590)
                      ++...       ...+......++|+.|++++|.....+|..+.++++|+.|++++|...+.+|....+++|+.|++++|
T Consensus       756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c  835 (1153)
T PLN03210        756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC  835 (1153)
T ss_pred             ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence            64321       11111223346788888888876667788888888888888888765556666666778888888887


Q ss_pred             cCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCc
Q 007762          453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNN  526 (590)
Q Consensus       453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  526 (590)
                      .....+|..    .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|+
T Consensus       836 ~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        836 SRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             Ccccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            654444432    357888888888887 677788888888888888865555677777788888888888875

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=6.6e-22  Score=224.43  Aligned_cols=343  Identities=19%  Similarity=0.195  Sum_probs=216.2

Q ss_pred             CCCcccccCCCCCcEEEeecccc------cccCCccccCCC-CCcEEEccccccccccCCCCccCCCCCcEEECcCCccc
Q 007762           64 KILDRGLCSLVHLQELYIYNNDL------RGSLPWCMANMT-SLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ  136 (590)
Q Consensus        64 ~~~~~~l~~l~~L~~L~L~~n~i------~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~  136 (590)
                      .+...+|.++++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+. .+|. .+ ...+|++|+++++.+.
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLE  624 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccc
Confidence            34556778888888888865532      224566666553 5888888887776 6666 34 4577888888877664


Q ss_pred             cccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCcccc
Q 007762          137 IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEF  216 (590)
Q Consensus       137 ~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~  216 (590)
                       ..+ ..+..+++|+.++++++..                            ...+| .+..+++|+.|++++|.....+
T Consensus       625 -~L~-~~~~~l~~Lk~L~Ls~~~~----------------------------l~~ip-~ls~l~~Le~L~L~~c~~L~~l  673 (1153)
T PLN03210        625 -KLW-DGVHSLTGLRNIDLRGSKN----------------------------LKEIP-DLSMATNLETLKLSDCSSLVEL  673 (1153)
T ss_pred             -ccc-cccccCCCCCEEECCCCCC----------------------------cCcCC-ccccCCcccEEEecCCCCcccc
Confidence             221 2234556666666554421                            11122 2455678888888888665677


Q ss_pred             chHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCC
Q 007762          217 PTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGN  296 (590)
Q Consensus       217 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  296 (590)
                      |..+ .++++|+.|++++|.....+|..+ .+++|+.|++++|...+.+|.    ..++|+.|++++|.+. .+|..+ .
T Consensus       674 p~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~  745 (1153)
T PLN03210        674 PSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-R  745 (1153)
T ss_pred             chhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-c
Confidence            7765 788888888888876555555544 677888888888754434443    2457888888888876 566554 4


Q ss_pred             CCCCcEEEccCcccc---c---ccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCC
Q 007762          297 MKFLQLLDVTNNQLT---G---EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKC  370 (590)
Q Consensus       297 l~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  370 (590)
                      +++|+.|.+.++...   +   .++......+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+
T Consensus       746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L  824 (1153)
T PLN03210        746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL  824 (1153)
T ss_pred             ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence            677777777654321   0   1111122234577777777776666667777777777777777765544555544 56


Q ss_pred             CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCc-CCCCCCCCCCCCcccEEEC
Q 007762          371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHPLSIEHVHL  449 (590)
Q Consensus       371 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l  449 (590)
                      ++|+.|++++|.....+|..   .++|+.|+|++|.+. .+|..+..+++|+.|++++|. +....+....++.|+.+++
T Consensus       825 ~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l  900 (1153)
T PLN03210        825 ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF  900 (1153)
T ss_pred             cccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence            77777777777544343332   356777777777776 466677777777777777754 3333333334566666666


Q ss_pred             cCcc
Q 007762          450 SKNM  453 (590)
Q Consensus       450 ~~n~  453 (590)
                      ++|.
T Consensus       901 ~~C~  904 (1153)
T PLN03210        901 SDCG  904 (1153)
T ss_pred             CCCc
Confidence            6664

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.2e-24  Score=198.52  Aligned_cols=277  Identities=20%  Similarity=0.184  Sum_probs=157.6

Q ss_pred             ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCC-CCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762            9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSD-STLGTNSSKILDRGLCSLVHLQELYIYNNDLR   87 (590)
Q Consensus         9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~   87 (590)
                      .||+.+|..+++||.||||.|  .++..-|..|. ++++|..|-+.+ |+|++    ++...|.++..|+.|.+.-|.+.
T Consensus        81 ~iP~~aF~~l~~LRrLdLS~N--~Is~I~p~AF~-GL~~l~~Lvlyg~NkI~~----l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen   81 SIPPGAFKTLHRLRRLDLSKN--NISFIAPDAFK-GLASLLSLVLYGNNKITD----LPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             cCChhhccchhhhceeccccc--chhhcChHhhh-hhHhhhHHHhhcCCchhh----hhhhHhhhHHHHHHHhcChhhhc
Confidence            445555555555555555555  33333333333 555544444433 44443    45455555555555555555555


Q ss_pred             ccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762           88 GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS  167 (590)
Q Consensus        88 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~  167 (590)
                      -....+|..+++|..|.+.+|.+. .++...+..+..++.+++..|.+..      ..+++.+........ +..     
T Consensus       154 Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~a~~~-iet-----  220 (498)
T KOG4237|consen  154 CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDLAMNP-IET-----  220 (498)
T ss_pred             chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc------ccccchhhhHHhhch-hhc-----
Confidence            444455555555555555555554 4444445555555555555544321      111111111100000 000     


Q ss_pred             CCCCCCCcccceEeccCCCCCCCcCChhc-cCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCC
Q 007762          168 PSLTAPNFQLSRLSLSSGYGDGVIFPKFL-YHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIH  246 (590)
Q Consensus       168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  246 (590)
                        .+..  ...-..+ +...+...-+..+ .....+..--.+.+......|...|..+++|++|++++|+++.+...+|.
T Consensus       221 --sgar--c~~p~rl-~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  221 --SGAR--CVSPYRL-YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             --ccce--ecchHHH-HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence              0000  0000000 0001111111111 11222322233444455678888899999999999999999999999999


Q ss_pred             CCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccc
Q 007762          247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT  311 (590)
Q Consensus       247 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  311 (590)
                      ...+++.|.+..|++. .+....+..+..|++|+|.+|.++...|..|..+..|.+|++-.|.+.
T Consensus       296 ~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9999999999999997 777777777999999999999999889999999999999999887665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=9.3e-21  Score=199.54  Aligned_cols=267  Identities=25%  Similarity=0.272  Sum_probs=170.9

Q ss_pred             CcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEcc
Q 007762          227 LESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT  306 (590)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~  306 (590)
                      -..|+++++.++. +|..+.  ++|+.|++.+|.++ .+|.    .+++|++|++++|.++ .+|..   .++|+.|+++
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            4445555555443 232222  24556666666555 3442    1456666666666665 34432   2456666666


Q ss_pred             CcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCccccc
Q 007762          307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM  386 (590)
Q Consensus       307 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  386 (590)
                      +|.+. .+|..    ..+|+.|++++|++... |.   ..++|+.|++++|++.+ +|..   ...|+.|++++|.+++ 
T Consensus       271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        271 SNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             CCchh-hhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence            66665 44431    34566666666666542 22   23566777777776663 3321   2346667777777763 


Q ss_pred             CccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccC
Q 007762          387 IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNY  466 (590)
Q Consensus       387 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  466 (590)
                      +|..   ..+|+.|++++|++.+ +|..   ..+|+.|++++|.+.. +|..  +.+|+.|++++|.+. .+|..    .
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~Lt-~LP~l----~  401 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLT-SLPVL----P  401 (788)
T ss_pred             cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--ccccceEEecCCccc-CCCCc----c
Confidence            3321   2467788888887773 4432   3467777888888774 4432  357888888888884 45543    2


Q ss_pred             CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762          467 HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                      ++|+.|++++|.+++ +|...   .+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus       402 s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        402 SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            579999999999984 66543   47889999999998 7899999999999999999999998888886554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=1.4e-23  Score=194.40  Aligned_cols=311  Identities=19%  Similarity=0.210  Sum_probs=201.7

Q ss_pred             EccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccC-C
Q 007762          255 DISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN-N  333 (590)
Q Consensus       255 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n  333 (590)
                      +-++-.++ ++|..+   ++.-+.++|..|.++...+..|+.+++|+.||+++|.|+ .|....|.+++.+..|-+.+ |
T Consensus        52 dCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCC
Confidence            33333444 555544   346666666666666555556666666666677666666 55555555666666555544 6


Q ss_pred             cCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCc-----
Q 007762          334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE-----  408 (590)
Q Consensus       334 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-----  408 (590)
                      +|+......|.++..++.|.+.-|++.......|..++++..|.+.+|.+.......|..+..++++.+..|.+.     
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            666655666666666666666666666555566666666666666666666444446666666666666665532     


Q ss_pred             -------CCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCC--cccEEECcCccCCCCCCccccccCCCCcEEEcCCCcC
Q 007762          409 -------GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL  479 (590)
Q Consensus       409 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l  479 (590)
                             ...|..++......-..+.+.++....+..|...  .+.+--.+.+......|...|..+++|+.|++++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                   1122223333333333344444443333333322  2222222334344566777799999999999999999


Q ss_pred             CCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCCCCcccee--
Q 007762          480 NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIF--  557 (590)
Q Consensus       480 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~--  557 (590)
                      +++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|..|+.+......+..++|.-+-...  
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w  366 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW  366 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence            998999999999999999999999877678899999999999999999999999999988888787777776553321  


Q ss_pred             ----ccccCCCCCCCCC
Q 007762          558 ----FFIQGPQGHPRLA  570 (590)
Q Consensus       558 ----~~~~~~~~np~~~  570 (590)
                          +...+-.|||+-.
T Consensus       367 l~~Wlr~~~~~~~~~Cq  383 (498)
T KOG4237|consen  367 LGEWLRKKSVVGNPRCQ  383 (498)
T ss_pred             HHHHHhhCCCCCCCCCC
Confidence                2223455777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.8e-19  Score=189.97  Aligned_cols=267  Identities=24%  Similarity=0.308  Sum_probs=209.3

Q ss_pred             CcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEE
Q 007762          200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL  279 (590)
Q Consensus       200 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  279 (590)
                      ..-..|+++++.++ .+|..+.   ++|+.|++.+|.++.. |.   .+++|++|++++|.++ .+|.    .+++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccC----ccccccee
Confidence            34668999999887 7887652   4799999999988863 32   3578999999999998 5664    25689999


Q ss_pred             EccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccc
Q 007762          280 NISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF  359 (590)
Q Consensus       280 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  359 (590)
                      ++++|.++ .+|..+   +.|+.|++++|++. .+|..    .++|+.|++++|.+.+. |..   ..+|+.|++++|.+
T Consensus       268 ~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L  334 (788)
T PRK15387        268 SIFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQL  334 (788)
T ss_pred             eccCCchh-hhhhch---hhcCEEECcCCccc-ccccc----ccccceeECCCCccccC-CCC---cccccccccccCcc
Confidence            99999987 555533   56889999999998 77652    57899999999998863 332   34688899999998


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC
Q 007762          360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  439 (590)
Q Consensus       360 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  439 (590)
                      . .+|..   ..+|+.|++++|++++ +|..   ..+|+.|++++|++.. +|..   ..+|+.|++++|.+++ +|.. 
T Consensus       335 ~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l-  400 (788)
T PRK15387        335 T-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL-  400 (788)
T ss_pred             c-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-
Confidence            7 35532   2579999999999984 4443   3578889999999884 5543   3579999999999985 4433 


Q ss_pred             CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccC
Q 007762          440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK  513 (590)
Q Consensus       440 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  513 (590)
                       +.+|+.|++++|.+. .+|..    ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus       401 -~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        401 -PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             -ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence             468999999999995 56653    347899999999998 78888999999999999999999887776633

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.5e-19  Score=190.09  Aligned_cols=254  Identities=25%  Similarity=0.362  Sum_probs=136.8

Q ss_pred             CCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEc
Q 007762          226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV  305 (590)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  305 (590)
                      +...|++++++++. +|..+  .+.|+.|++++|.++ .+|..+.   ++|++|++++|.++ .+|..+.  ..|+.|++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            34555555555543 22211  234555566655555 4444332   35555555555555 3343332  24555555


Q ss_pred             cCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762          306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG  385 (590)
Q Consensus       306 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  385 (590)
                      ++|.+. .+|..+   ..+|+.|++++|++..                         +|..+  .++|+.|++++|++++
T Consensus       249 s~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~-------------------------LP~~l--~~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        249 SINRIT-ELPERL---PSALQSLDLFHNKISC-------------------------LPENL--PEELRYLSVYDNSIRT  297 (754)
T ss_pred             cCCccC-cCChhH---hCCCCEEECcCCccCc-------------------------ccccc--CCCCcEEECCCCcccc
Confidence            555554 444433   1244555555444442                         23222  1345555555555542


Q ss_pred             cCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcccccc
Q 007762          386 MIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFN  465 (590)
Q Consensus       386 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  465 (590)
                       +|..+.  ++|+.|++++|.+.. +|..+  .++|+.|++++|.+++ +|..+ +++|+.|++++|.+. .+|.. +  
T Consensus       298 -LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~-~LP~~-l--  365 (754)
T PRK15370        298 -LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT-VLPET-L--  365 (754)
T ss_pred             -Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh-cCcccEEECCCCCCC-cCChh-h--
Confidence             232222  355666666666552 33322  2456666666666654 33322 356777777777763 45543 2  


Q ss_pred             CCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccc----cCCCCCCEEECcCCccCCCCccccccCC
Q 007762          466 YHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQL----CKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       466 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                      .++|+.|++++|.++ .+|..+.  ..|+.|++++|+++ .+|..+    ..++.+..|++.+|+++.   ..+++++
T Consensus       366 p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~~L~  436 (754)
T PRK15370        366 PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQNMQ  436 (754)
T ss_pred             cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHHHHHH
Confidence            257888888888887 4555554  36888888888887 555443    345778888888888873   3444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.6e-17  Score=176.46  Aligned_cols=203  Identities=22%  Similarity=0.389  Sum_probs=134.4

Q ss_pred             CcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEE
Q 007762          200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL  279 (590)
Q Consensus       200 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  279 (590)
                      .+...|+++++.++ .+|..+   .+.|+.|++++|.+... +..+  .++|+.|++++|.++ .+|..+.   ++|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENL--QGNIKTLYANSNQLT-SIPATLP---DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCccc-cCChhhh---ccccEE
Confidence            35678888888877 667543   35788999999988863 3332  358999999999887 6776553   479999


Q ss_pred             EccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccc
Q 007762          280 NISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF  359 (590)
Q Consensus       280 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  359 (590)
                      ++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+   .++|+.|++++|++.. +|..+  .++|+.|++++|.+
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~L  316 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSL  316 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcc
Confidence            99999888 6676654  57999999999888 677654   3578889998888775 33322  24677777777777


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762          360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       360 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      .. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.++
T Consensus       317 t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        317 TA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             cc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            63 34322  2466666676666653 343332  45666666666555 2343332  35555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1e-18  Score=172.93  Aligned_cols=61  Identities=26%  Similarity=0.332  Sum_probs=37.3

Q ss_pred             CCCcEEEcCCCcCCC----CccccccccCCCCEEECcCCcccCC----CcccccCC-CCCCEEECcCCcc
Q 007762          467 HSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGE----VPVQLCKL-NQLQLLDLSNNNL  527 (590)
Q Consensus       467 ~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l  527 (590)
                      +.|+.|++++|.+++    .+...+..+++|+++++++|.++..    ....+... +.|+.+++.+|++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            567777777777652    2233445556777777777777744    33344444 5677777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.8e-18  Score=171.11  Aligned_cols=261  Identities=24%  Similarity=0.252  Sum_probs=125.0

Q ss_pred             EeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc------cCCccccCC
Q 007762           24 LDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG------SLPWCMANM   97 (590)
Q Consensus        24 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~------~~~~~~~~l   97 (590)
                      |+|.++  .+.+.....++..++.|++|+++++.+++.+.......+...++|++++++++.+..      .++..+..+
T Consensus         3 l~L~~~--~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGE--LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccC--cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            455555  444322223332555666666666665442222222344555566666666665541      122344556


Q ss_pred             CCCcEEEccccccccccCCCCccCC---CCCcEEECcCCccccccC---ccccccC-CCccEEEccCCcccccccCCCCC
Q 007762           98 TSLRILYVSSNQLTGSISSSPLVHL---TSIEELHLSNNHFQIPIS---LEPLFNH-SRLKVFWAKNNEINAEITQSPSL  170 (590)
Q Consensus        98 ~~L~~L~ls~n~l~~~~~~~~l~~l---~~L~~L~ls~n~~~~~~~---~~~l~~l-~~L~~l~l~~~~~~~~~~~~~~~  170 (590)
                      ++|++|++++|.+....+. .+..+   ++|++|++++|.+.+...   ...+..+ ++|+.+++++|.+.....     
T Consensus        81 ~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-----  154 (319)
T cd00116          81 CGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-----  154 (319)
T ss_pred             CceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-----
Confidence            6666666666665422211 22222   236666666665542100   0122333 455555555554332100     


Q ss_pred             CCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHH---hhcCCCCcEEEccCCCCCCCC----cC
Q 007762          171 TAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL---LENNTNLESLFLVNDSLAGPF----RL  243 (590)
Q Consensus       171 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~----~~  243 (590)
                                         ..++..+..+++|++|++++|.+.+.....+   +..+++|+.|++++|.+.+..    ..
T Consensus       155 -------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         155 -------------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             -------------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence                               0122334455566677776666653322222   123346666666666655321    22


Q ss_pred             CCCCCCcccEEEccCCcCCCCCchhhhhc----CCCCcEEEccCceecc----cCCcccCCCCCCcEEEccCcccc
Q 007762          244 PIHSHKRLRLLDISNNNFRGHIPVEIGDV----LPGLFSLNISMNALDG----SIPSSFGNMKFLQLLDVTNNQLT  311 (590)
Q Consensus       244 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~  311 (590)
                      .+..+++|+.|++++|.+++.....+...    .+.|++|++++|.++.    .+...+..++.|+++++++|.+.
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            34455667777777766654233333222    2466666666665541    22233344455666666666555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=7.6e-18  Score=138.59  Aligned_cols=166  Identities=29%  Similarity=0.460  Sum_probs=119.7

Q ss_pred             CccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762          345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL  424 (590)
Q Consensus       345 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  424 (590)
                      .+.+++.|.+++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4566777778888887 56666778888888888888887 66777888888888888888776 678888888888888


Q ss_pred             EcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762          425 DISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       425 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      |+.+|.+.+.                      .+| +.|..++.|+-|+++.|.+. .+|..++.+.+|+.|.+..|.+.
T Consensus       108 dltynnl~e~----------------------~lp-gnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  108 DLTYNNLNEN----------------------SLP-GNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             hccccccccc----------------------cCC-cchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence            8888877631                      122 22555666777777777776 66666777777777777777766


Q ss_pred             CCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762          505 GEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       505 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                       .+|..++.+..|+.|.+.+|+++ .+|+.+.++.
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence             66777777777777777777776 5666666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.52  E-value=3.3e-16  Score=129.04  Aligned_cols=155  Identities=29%  Similarity=0.490  Sum_probs=75.7

Q ss_pred             CCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcE
Q 007762          248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEY  327 (590)
Q Consensus       248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  327 (590)
                      +..++.|.+++|+++ .+|..+.. +.+|+.|++++|+++ .+|..++.+++|++|+++.|++. .+|..+. .++.|+.
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhh
Confidence            344455555555554 44444444 445555555555554 44445555555555555555444 4444433 2444444


Q ss_pred             EEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcC
Q 007762          328 LALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL  407 (590)
Q Consensus       328 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~  407 (590)
                      |++..|++...                       .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+
T Consensus       107 ldltynnl~e~-----------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  107 LDLTYNNLNEN-----------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hhccccccccc-----------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            44444444321                       23444444444444555555444 4444455555555555555554


Q ss_pred             cCCCCcccCCCCCCcEEEcccCcCC
Q 007762          408 EGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      . .+|..++.+++|+.|.+.+|+++
T Consensus       163 l-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  163 L-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             h-hCcHHHHHHHHHHHHhcccceee
Confidence            4 34555555555555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=2.4e-12  Score=125.97  Aligned_cols=169  Identities=30%  Similarity=0.391  Sum_probs=83.2

Q ss_pred             EEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCc
Q 007762          327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH  406 (590)
Q Consensus       327 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  406 (590)
                      ..+++.|++.. +|..+..+-.|+.+.++.|.+. .+|..+.++..|+.++++.|+++ ..|..+..++ |+.|.+++|+
T Consensus        79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            34455554442 3444444445555555555544 44444445555555555555544 3333333332 4445555554


Q ss_pred             CcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccc
Q 007762          407 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW  486 (590)
Q Consensus       407 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  486 (590)
                      ++ .+|..++....|..||.+.|.+.                        .++.. +.++.+|+.|.++.|++. .+|..
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~------------------------slpsq-l~~l~slr~l~vrRn~l~-~lp~E  207 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ------------------------SLPSQ-LGYLTSLRDLNVRRNHLE-DLPEE  207 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh------------------------hchHH-hhhHHHHHHHHHhhhhhh-hCCHH
Confidence            44 34444444444555555555444                        33333 455555555555555555 33333


Q ss_pred             ccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccC
Q 007762          487 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH  528 (590)
Q Consensus       487 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (590)
                      +..+ .|..||++.|+++ .+|..|..|..|++|-|.+|+++
T Consensus       208 l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  208 LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            4432 3555555555555 55555555555555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=2e-12  Score=119.36  Aligned_cols=91  Identities=29%  Similarity=0.351  Sum_probs=40.5

Q ss_pred             CCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecc---cccccCCc-------cccCCCCCcEEEcccccccccc
Q 007762           45 MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNN---DLRGSLPW-------CMANMTSLRILYVSSNQLTGSI  114 (590)
Q Consensus        45 l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n---~i~~~~~~-------~~~~l~~L~~L~ls~n~l~~~~  114 (590)
                      +..+++++|++|.+.....+.....+.+.+.|+.-++++-   +....+|+       ++..+++|++||||+|.+.-..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            4445555555555544333333344444445555555442   11112222       2334455666666665543111


Q ss_pred             CC---CCccCCCCCcEEECcCCcc
Q 007762          115 SS---SPLVHLTSIEELHLSNNHF  135 (590)
Q Consensus       115 ~~---~~l~~l~~L~~L~ls~n~~  135 (590)
                      +.   ..+.+++.|++|.+.+|-+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCC
Confidence            11   0134455566666655544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=1.9e-12  Score=126.56  Aligned_cols=171  Identities=27%  Similarity=0.402  Sum_probs=131.9

Q ss_pred             CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCcc
Q 007762          374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNM  453 (590)
Q Consensus       374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  453 (590)
                      ...+++.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|++++++.|+++ ..|.-+...-|+.|.+++|+
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNK  154 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCc
Confidence            34566666665 55666666667777777777766 56777777777777777777776 33333334457777888888


Q ss_pred             CCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcc
Q 007762          454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP  533 (590)
Q Consensus       454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  533 (590)
                      + +.+|.. +...+.|..||.+.|++. .+|..++.+.+|+.|++..|++. .+|+.++.|+ |..||++.|+++ .||-
T Consensus       155 l-~~lp~~-ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  155 L-TSLPEE-IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             c-ccCCcc-cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecch
Confidence            7 467776 668899999999999998 67777999999999999999998 6788888665 899999999999 7999


Q ss_pred             ccccCCccccccCCCCCCCc
Q 007762          534 CFDNTTLHESYSNSSSPNKQ  553 (590)
Q Consensus       534 ~~~~l~~~~~~~~~~~~~~~  553 (590)
                      +|..++.+...-...+|...
T Consensus       229 ~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhheeeeeccCCCCC
Confidence            99999877777777776544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=9.9e-11  Score=101.61  Aligned_cols=103  Identities=28%  Similarity=0.311  Sum_probs=35.7

Q ss_pred             CCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc-cccccccCCCCEE
Q 007762          418 LDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI-SDWVDGLSQLSHL  496 (590)
Q Consensus       418 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L  496 (590)
                      +.+|+.|++++|.++ .+++.-.++.|+.|++++|.++ .+.......+++|+.|++++|+|...- -..+..+++|++|
T Consensus        41 l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   41 LDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            344444444444444 2222222334444444444442 333321234677777777777776421 1345667777777


Q ss_pred             ECcCCcccCCC---cccccCCCCCCEEEC
Q 007762          497 ILGHNNLEGEV---PVQLCKLNQLQLLDL  522 (590)
Q Consensus       497 ~L~~n~l~~~~---~~~~~~l~~L~~L~l  522 (590)
                      ++.+|+++...   ...+..+|+|+.||-
T Consensus       119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             eccCCcccchhhHHHHHHHHcChhheeCC
Confidence            77777776331   123566777777654

>PLN03150 hypothetical protein; Provisional

Probab=99.09  E-value=1.5e-10  Score=123.11  Aligned_cols=94  Identities=27%  Similarity=0.472  Sum_probs=86.3

Q ss_pred             cccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEEC
Q 007762          443 SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL  522 (590)
Q Consensus       443 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  522 (590)
                      .++.|+|++|.+.+.+|.. +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3778899999998888877 888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCcccccc
Q 007762          523 SNNNLHGPIPPCFDN  537 (590)
Q Consensus       523 ~~n~l~~~~p~~~~~  537 (590)
                      ++|+++|.+|..+..
T Consensus       498 s~N~l~g~iP~~l~~  512 (623)
T PLN03150        498 NGNSLSGRVPAALGG  512 (623)
T ss_pred             cCCcccccCChHHhh
Confidence            999999999988765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=9e-12  Score=115.06  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=83.0

Q ss_pred             CCCCCCEEEccCCccccc----CccccCCCCCccEEECCCCcCcCCC----CcccCCCCCCcEEEcccCcCCCCCCCCCC
Q 007762          369 KCFVLEGLFLNNNSLSGM----IPRWLGNLTRLQHIMMPKNHLEGPI----PVEFCQLDWLQILDISDNNISGSLPSCFH  440 (590)
Q Consensus       369 ~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  440 (590)
                      .-+.|+.+...+|++...    +...|...+.|+.+.+..|.+....    ...|..+++|+.||+.+|.++....    
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----  230 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----  230 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----
Confidence            345666676666665532    2234555666777777666655322    2345666777777777776652111    


Q ss_pred             CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc-----cccCCCCEEECcCCcccCC----Ccccc
Q 007762          441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-----DGLSQLSHLILGHNNLEGE----VPVQL  511 (590)
Q Consensus       441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~  511 (590)
                                      .....++..+++|+.|++++|.+...-...|     ...++|++|.+.+|.++..    +...+
T Consensus       231 ----------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~  294 (382)
T KOG1909|consen  231 ----------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM  294 (382)
T ss_pred             ----------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence                            1112235556778888888887765433222     3367888888888887733    22334


Q ss_pred             cCCCCCCEEECcCCcc
Q 007762          512 CKLNQLQLLDLSNNNL  527 (590)
Q Consensus       512 ~~l~~L~~L~l~~n~l  527 (590)
                      ...|.|+.|+|++|.+
T Consensus       295 ~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  295 AEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcchhhHHhcCCcccc
Confidence            5577888888888888

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=8.2e-11  Score=102.11  Aligned_cols=137  Identities=22%  Similarity=0.363  Sum_probs=50.4

Q ss_pred             cccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccc
Q 007762            6 VNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND   85 (590)
Q Consensus         6 ~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~   85 (590)
                      .+.++|  -+.+..+++.|+|++++|  . .+ +.+...+.+|+.|++++|.+..    +  +.+..+++|++|++++|.
T Consensus         8 ~i~~~~--~~~n~~~~~~L~L~~n~I--~-~I-e~L~~~l~~L~~L~Ls~N~I~~----l--~~l~~L~~L~~L~L~~N~   75 (175)
T PF14580_consen    8 MIEQIA--QYNNPVKLRELNLRGNQI--S-TI-ENLGATLDKLEVLDLSNNQITK----L--EGLPGLPRLKTLDLSNNR   75 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS-
T ss_pred             cccccc--cccccccccccccccccc--c-cc-cchhhhhcCCCEEECCCCCCcc----c--cCccChhhhhhcccCCCC
Confidence            445566  367777889999999965  2 22 3344357789999999999864    4  368888999999999999


Q ss_pred             ccccCCccc-cCCCCCcEEEccccccccccCC-CCccCCCCCcEEECcCCccccccC--ccccccCCCccEEEcc
Q 007762           86 LRGSLPWCM-ANMTSLRILYVSSNQLTGSISS-SPLVHLTSIEELHLSNNHFQIPIS--LEPLFNHSRLKVFWAK  156 (590)
Q Consensus        86 i~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~-~~l~~l~~L~~L~ls~n~~~~~~~--~~~l~~l~~L~~l~l~  156 (590)
                      |+. +...+ ..+++|++|++++|+|. .+.. ..+..+++|++|++.+|+++....  ...+..+++|+.|+-.
T Consensus        76 I~~-i~~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   76 ISS-ISEGLDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --S--CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCc-cccchHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            984 44444 46899999999999887 3332 246778999999999998874322  1345678888887643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=2.4e-11  Score=109.74  Aligned_cols=199  Identities=20%  Similarity=0.185  Sum_probs=123.6

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccC-CcccccCccccCCCCCccEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN-NSLSGMIPRWLGNLTRLQHI  400 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L  400 (590)
                      +.+|+.+.++.|.-.. +......-|.|+++...+..+. ..|. +--...+....... .-.+|.....+..+..|+++
T Consensus       213 f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel  289 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTEL  289 (490)
T ss_pred             hhhhheeeeeccchhh-eeceeecCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence            5678888888775332 1111223466777777655443 1111 11111121111111 11223333445566778888


Q ss_pred             ECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762          401 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN  480 (590)
Q Consensus       401 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (590)
                      ||++|.+. .+.++..-.+.++.|++++|.+.. +.....+++|+.||+++|.++ .+... -..+-+.+.|.|+.|.+.
T Consensus       290 DLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  290 DLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             cccccchh-hhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH-hhhhh-HhhhcCEeeeehhhhhHh
Confidence            88888877 556667777888888888888873 333444778888888888874 33322 344567888888888876


Q ss_pred             CCccccccccCCCCEEECcCCcccCCC-cccccCCCCCCEEECcCCccCC
Q 007762          481 GSISDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      +.  ..++.+-+|..||+++|+|.... -..++++|.|+.+.+.+||+.+
T Consensus       366 ~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  366 TL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            33  34677778888888888887322 2457888888888888888884

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=3.1e-11  Score=108.96  Aligned_cols=133  Identities=25%  Similarity=0.319  Sum_probs=95.6

Q ss_pred             cCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEE
Q 007762          368 SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHV  447 (590)
Q Consensus       368 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  447 (590)
                      .....|+.+++++|.++ .+.+++.-.+.++.|+++.|.+..  .+.+..+++|+.||+++|.++........+.+++.|
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            33456777777777776 444556667777777887777763  233667778888888888776444333346678888


Q ss_pred             ECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC-ccccccccCCCCEEECcCCcccCC
Q 007762          448 HLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       448 ~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      .+++|.+. . ..+ +..+.+|..||+++|+|... -...+++++.|+.+.|.+|++.+.
T Consensus       358 ~La~N~iE-~-LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  358 KLAQNKIE-T-LSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ehhhhhHh-h-hhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            88888772 2 222 77788999999999999852 335689999999999999999844

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.6e-11  Score=115.21  Aligned_cols=112  Identities=21%  Similarity=0.227  Sum_probs=50.0

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc--cCCccccCCCCCcEEEccccccccccCCCCccC
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG--SLPWCMANMTSLRILYVSSNQLTGSISSSPLVH  121 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~  121 (590)
                      .+.+|+...|.++.+...+.+   +....|++++.||||.|-+..  ........+|+|+.|+++.|.+........-..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            345555666666555431111   344555666666666654432  111222345566666666665542222212223


Q ss_pred             CCCCcEEECcCCccccccCccccccCCCccEEEccCC
Q 007762          122 LTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNN  158 (590)
Q Consensus       122 l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~  158 (590)
                      +++|+.|.++.|.++-..-...+..++.|+.|++.+|
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            4555555555554431111122234444444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=1.9e-10  Score=117.04  Aligned_cols=194  Identities=33%  Similarity=0.386  Sum_probs=102.0

Q ss_pred             EEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCcc-ccCceeccCccccccCCccccCCCCCCEEEccC
Q 007762          302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLT-NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  380 (590)
Q Consensus       302 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  380 (590)
                      .++...+.+...+... . ....++.+++.+|.+.. ++....... +|+.|++++|.+. .++..+..++.|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~~-~-~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISEL-L-ELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhh-h-cccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            5666666663232222 2 24667778888777765 333333443 7777777777776 4444566777777777777


Q ss_pred             CcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCc
Q 007762          381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKR  460 (590)
Q Consensus       381 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  460 (590)
                      |++. .++......+.|+.|++++|++. .+|........|+++.+++|.+...+........+..+.+.+|++. .++.
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccc
Confidence            7776 33333335667777777777766 4444444445566666666643322222223334444444444431 1111


Q ss_pred             cccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762          461 GTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       461 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (590)
                      . +..+++++.|++++|.++...+  +..+.+++.|++++|.++.
T Consensus       250 ~-~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         250 S-IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             h-hccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence            1 3344444444444444442221  4444444444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=5.3e-10  Score=113.82  Aligned_cols=152  Identities=35%  Similarity=0.471  Sum_probs=64.6

Q ss_pred             CCCcEEEccCceecccCCcccCCCC-CCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCce
Q 007762          274 PGLFSLNISMNALDGSIPSSFGNMK-FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL  352 (590)
Q Consensus       274 ~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  352 (590)
                      +.++.+++.++.++ .++......+ +|+.|++++|++. .++.... .+++|+.|+++.|++... +......++|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhhhh-hhhhhhhhhhhhe
Confidence            34444444444444 3333333332 4444444444444 3322222 244444444444444431 1111134444444


Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762          353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       353 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      ++++|++. .+|........|+.+.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..+++++.|++++|.++
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence            55544444 33332223333555555554322 22333444445555555555444 22344444555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6.1e-11  Score=112.71  Aligned_cols=211  Identities=21%  Similarity=0.186  Sum_probs=133.5

Q ss_pred             hcCCCCcEEEccCCCCCCCCc-CCCCCCCcccEEEccCCcCCCCC-chhhhhcCCCCcEEEccCceecccCCcc-cCCCC
Q 007762          222 ENNTNLESLFLVNDSLAGPFR-LPIHSHKRLRLLDISNNNFRGHI-PVEIGDVLPGLFSLNISMNALDGSIPSS-FGNMK  298 (590)
Q Consensus       222 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~-l~~l~  298 (590)
                      .++.+|+++.+.++.+..... .-...|++++.||++.|-+.... ...+...+|+|+.|+++.|.+.....+. -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            466788888888887664321 23567889999999998665322 2345566889999999988876211111 12457


Q ss_pred             CCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccC-CccccCCCCCCEEE
Q 007762          299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI-PQSLSKCFVLEGLF  377 (590)
Q Consensus       299 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~  377 (590)
                      +|+.|.++.|.++..--..+...+|+|+.|++..|...........-+..|++|++++|.+.... ....+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            78888888888774333333445888888888888533222333344677888888888776332 14456777888888


Q ss_pred             ccCCcccccC-ccc-----cCCCCCccEEECCCCcCcCC-CCcccCCCCCCcEEEcccCcCC
Q 007762          378 LNNNSLSGMI-PRW-----LGNLTRLQHIMMPKNHLEGP-IPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       378 l~~n~~~~~~-~~~-----~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      ++.|.+...- |+.     ....++|+.|++..|++... ....+..+++|+.|.+..|.++
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8888776432 111     24466777777777776421 1123444566666666666665

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=2.4e-09  Score=114.03  Aligned_cols=112  Identities=32%  Similarity=0.458  Sum_probs=75.1

Q ss_pred             ccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCC
Q 007762          397 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY  476 (590)
Q Consensus       397 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~  476 (590)
                      ++.|+|++|.+.+.+|..+..+++|+.|++++|.+.                       +.+|.. +..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-----------------------g~iP~~-~~~l~~L~~LdLs~  475 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-----------------------GNIPPS-LGSITSLEVLDLSY  475 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-----------------------CcCChH-HhCCCCCCEEECCC
Confidence            455555555555555555555555555555555554                       555554 66777788888888


Q ss_pred             CcCCCCccccccccCCCCEEECcCCcccCCCcccccCC-CCCCEEECcCCccCCCCc
Q 007762          477 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       477 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p  532 (590)
                      |.+++.+|..++.+++|++|+|++|++++.+|..+..+ .++..+++.+|+.....|
T Consensus       476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            88887778878888888888888888887787777653 356677777776554444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=9.9e-10  Score=78.26  Aligned_cols=61  Identities=43%  Similarity=0.518  Sum_probs=42.4

Q ss_pred             CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCcc
Q 007762          467 HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL  527 (590)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  527 (590)
                      |+|+.|++++|+++...+.+|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777755556677777777777777777755556677777777777777764

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.2e-09  Score=118.69  Aligned_cols=289  Identities=22%  Similarity=0.237  Sum_probs=149.3

Q ss_pred             CcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCC--CCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCc
Q 007762          200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDS--LAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF  277 (590)
Q Consensus       200 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  277 (590)
                      ...+.+.+-++.+. .++..  ..+++|++|-+..+.  +.......|..++.|+.||+++|.-.+.+|..+.. +-+|+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr  598 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR  598 (889)
T ss_pred             hheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence            45566666666554 33332  356677777777775  44444445667788888888877554577777776 67888


Q ss_pred             EEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCC--CccCccccCccccCceecc
Q 007762          278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLE--GHMFSRNFNLTNLKWLQLE  355 (590)
Q Consensus       278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~  355 (590)
                      +|++++..+. .+|.++++++.|.+|++..+.....++.. ...+.+|++|.+......  ......+..+..|+.+.+.
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            8888887777 77778888888888887776654334333 334777777777654321  1112222334444444443


Q ss_pred             CccccccCCccccCCCCCC----EEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCC------CCCCcEEE
Q 007762          356 GNHFVGEIPQSLSKCFVLE----GLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ------LDWLQILD  425 (590)
Q Consensus       356 ~~~~~~~~~~~l~~~~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~------l~~L~~L~  425 (590)
                      ....  .+-..+...+.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+..........      ++++..+.
T Consensus       677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~  753 (889)
T KOG4658|consen  677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS  753 (889)
T ss_pred             cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence            2221  0001112222222    2222222222 23345566677777777777665322212111      22333333


Q ss_pred             cccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC-ccccccccCCCCEEEC
Q 007762          426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS-ISDWVDGLSQLSHLIL  498 (590)
Q Consensus       426 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L  498 (590)
                      +.+|...........+++|+.|.+..|.....+.+. ...+..+..+.+..+.+.+. .-...++++++..+.+
T Consensus       754 ~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~-~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l  826 (889)
T KOG4658|consen  754 ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK-LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL  826 (889)
T ss_pred             hhccccccccchhhccCcccEEEEecccccccCCCH-HHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence            333333222222223667777777777664444433 44444455444555544433 2233333444443333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.2e-09  Score=75.02  Aligned_cols=61  Identities=38%  Similarity=0.444  Sum_probs=53.1

Q ss_pred             CcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcc
Q 007762          442 LSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL  503 (590)
Q Consensus       442 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  503 (590)
                      ++|++|++++|.+ ..++...|.++++|++|++++|.++...+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4577788888877 477877799999999999999999988888999999999999999975

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=1.8e-09  Score=110.06  Aligned_cols=226  Identities=27%  Similarity=0.274  Sum_probs=118.0

Q ss_pred             cCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCC
Q 007762          294 FGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL  373 (590)
Q Consensus       294 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  373 (590)
                      +..+++|+.+++.+|.+. .+.... ..+++|++|++++|.|....  .+..++.|+.|++.+|.+...  ..+..++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhh
Confidence            334444445555554444 222211 12445555555555554321  223344455555555555422  223335556


Q ss_pred             CEEEccCCcccccCc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCc--ccEEECc
Q 007762          374 EGLFLNNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS--IEHVHLS  450 (590)
Q Consensus       374 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--L~~L~l~  450 (590)
                      +.+++++|.+...-+ . ...+.+++.+.+.+|.+..  ...+..+..+..+++..|.++. ..+......  |+.++++
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLS  240 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcc
Confidence            666666665553322 1 3555666666666666542  2223333444444666666552 222222222  6677777


Q ss_pred             CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCC---Cccc-ccCCCCCCEEECcCCc
Q 007762          451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE---VPVQ-LCKLNQLQLLDLSNNN  526 (590)
Q Consensus       451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~l~~n~  526 (590)
                      +|.+. .++.. +..+..+..|++++|.+...  ..+.....+..+....|++...   .... ....+.+..+.+.+|+
T Consensus       241 ~n~i~-~~~~~-~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (414)
T KOG0531|consen  241 GNRIS-RSPEG-LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP  316 (414)
T ss_pred             cCccc-ccccc-ccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence            77663 33222 56667788888888877643  2244556667777777766522   1121 4566778888888888


Q ss_pred             cCCCCcc
Q 007762          527 LHGPIPP  533 (590)
Q Consensus       527 l~~~~p~  533 (590)
                      +....+.
T Consensus       317 ~~~~~~~  323 (414)
T KOG0531|consen  317 IRKISSL  323 (414)
T ss_pred             ccccccc
Confidence            8765553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=1.6e-08  Score=110.18  Aligned_cols=271  Identities=23%  Similarity=0.251  Sum_probs=155.6

Q ss_pred             CCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCc--CCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCc
Q 007762          224 NTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNN--FRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ  301 (590)
Q Consensus       224 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~  301 (590)
                      ....+...+-++.+......  ..+++|++|-+..|.  +. .++..++..++.|+.||+++|.--+.+|..++.+-+|+
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             hhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            34556666666655442222  244578888888875  44 66666666688888888888766568888888888888


Q ss_pred             EEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc--ccCCccccCCCCCCEEEcc
Q 007762          302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV--GEIPQSLSKCFVLEGLFLN  379 (590)
Q Consensus       302 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~  379 (590)
                      +|++++..+. .+|..+. .+..|.+|++..+.-....+.....+.+|++|.+......  ...-..+..+..|+.+...
T Consensus       599 yL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            8888888887 7887776 4778888888877654444555556788888877654311  1111233344444444443


Q ss_pred             CCcccccCccccCCCCCcc----EEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-------CCcccEEE
Q 007762          380 NNSLSGMIPRWLGNLTRLQ----HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-------PLSIEHVH  448 (590)
Q Consensus       380 ~n~~~~~~~~~~~~l~~L~----~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~~L~~L~  448 (590)
                      ....  .+...+..+++|.    .+.+.++... ..+..+..+.+|+.|.+.+|.+.+.......       ++++..+.
T Consensus       677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~  753 (889)
T KOG4658|consen  677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS  753 (889)
T ss_pred             cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence            3322  1112223333333    3332222222 3455677788888888888887643332211       22333333


Q ss_pred             CcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762          449 LSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       449 l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      ..+|.....+.+  ..-.++|+.|.+..+...+.+......+..++.+.+..+.+.
T Consensus       754 ~~~~~~~r~l~~--~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  754 ILNCHMLRDLTW--LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             hhccccccccch--hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            344433222211  123467888888777665544444444555554444444444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.8e-10  Score=102.02  Aligned_cols=182  Identities=20%  Similarity=0.119  Sum_probs=88.2

Q ss_pred             CCcEEEeecccccc-cCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCc-cccccCccccccCCCccE
Q 007762           75 HLQELYIYNNDLRG-SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH-FQIPISLEPLFNHSRLKV  152 (590)
Q Consensus        75 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~-~~~~~~~~~l~~l~~L~~  152 (590)
                      .||+|||++..|+. .+-..++.|.+|+.|.+-++.+.+.+.. .+.+-.+|+.|+++.+. ++.....-.+..|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            36677777666653 2223445666677776666666544444 45556667777776654 221111224456677777


Q ss_pred             EEccCCcccccccCCCCCCCCCcccceEeccCCCC---CCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcE
Q 007762          153 FWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYG---DGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLES  229 (590)
Q Consensus       153 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~  229 (590)
                      |+++.|....+..... .......++.|++ +++.   ....+..-...+++|..||++++..........+..++.|++
T Consensus       265 LNlsWc~l~~~~Vtv~-V~hise~l~~LNl-sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVA-VAHISETLTQLNL-SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             cCchHhhccchhhhHH-Hhhhchhhhhhhh-hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            7777665543331110 0111124444444 1111   001122223456666666666653222222223345666666


Q ss_pred             EEccCCCCCC-CCcCCCCCCCcccEEEccCC
Q 007762          230 LFLVNDSLAG-PFRLPIHSHKRLRLLDISNN  259 (590)
Q Consensus       230 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n  259 (590)
                      |.++.|.... .....+...|.|.+|++.++
T Consensus       343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            6666553221 11123445555666665554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.1e-09  Score=99.16  Aligned_cols=179  Identities=22%  Similarity=0.178  Sum_probs=113.0

Q ss_pred             cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCC-cCCCCCchhhhhcCCCCcEE
Q 007762          201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNN-NFRGHIPVEIGDVLPGLFSL  279 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L  279 (590)
                      .|+.+|++...++..-...++..|.+|+.|.+.++.+.+.+...+++...|+.|+++.+ .++......+...++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            58889999988876667777889999999999999999888778888899999999987 45533334455568888899


Q ss_pred             EccCceecccCCc-ccCC-CCCCcEEEccCccc--ccccchhhhcCCCCCcEEEccCCc-CCCccCccccCccccCceec
Q 007762          280 NISMNALDGSIPS-SFGN-MKFLQLLDVTNNQL--TGEIPEHLAVGCVNLEYLALSNNS-LEGHMFSRNFNLTNLKWLQL  354 (590)
Q Consensus       280 ~L~~n~~~~~~~~-~l~~-l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l  354 (590)
                      +++.|.+...... .+.. -++|+.|++++..-  ...--..+...+++|.+||++.|. +.......|..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            9988876532211 1111 24677777776531  111112333457777777777663 22222333445566666666


Q ss_pred             cCccccccCCc---cccCCCCCCEEEccCC
Q 007762          355 EGNHFVGEIPQ---SLSKCFVLEGLFLNNN  381 (590)
Q Consensus       355 ~~~~~~~~~~~---~l~~~~~L~~L~l~~n  381 (590)
                      +.|..  ..|.   .+...++|.+|++.+|
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66543  2232   2233445555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=8.1e-09  Score=105.25  Aligned_cols=245  Identities=22%  Similarity=0.229  Sum_probs=103.3

Q ss_pred             cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcE
Q 007762          223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL  302 (590)
Q Consensus       223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  302 (590)
                      .+..++.+.+..+.+.. +...+..+.+|+.+++.+|.+. .+...+. .+++|+.|++++|.++..  ..+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchh-hhhcchheeccccccccc--cchhhccchhh
Confidence            34444555555554443 1122344555555555555554 2222111 144555555555555421  12344444555


Q ss_pred             EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccC-ccccCccccCceeccCccccccCCccccCCCCCCEEEccCC
Q 007762          303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF-SRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN  381 (590)
Q Consensus       303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  381 (590)
                      |++.+|.+. .+....  .+..|+.+++++|.+..... . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|
T Consensus       145 L~l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  145 LNLSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             heeccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence            555555554 332221  14445555555554443222 1 23344444444444444311  11222233333344444


Q ss_pred             cccccCccccCCCCC--ccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCC
Q 007762          382 SLSGMIPRWLGNLTR--LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLK  459 (590)
Q Consensus       382 ~~~~~~~~~~~~l~~--L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~  459 (590)
                      .+...-  .+..+..  |+.+++++|++. ..+..+..+.+                       +..+++.++.+...- 
T Consensus       219 ~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~-----------------------l~~l~~~~n~~~~~~-  271 (414)
T KOG0531|consen  219 KISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKN-----------------------LPVLDLSSNRISNLE-  271 (414)
T ss_pred             cceecc--CcccchhHHHHHHhcccCccc-ccccccccccc-----------------------ccccchhhccccccc-
Confidence            433211  1111122  444444444443 11123334444                       444444444432111 


Q ss_pred             ccccccCCCCcEEEcCCCcCCC---Ccccc-ccccCCCCEEECcCCcccCCC
Q 007762          460 RGTFFNYHSLVTLDLSYNRLNG---SISDW-VDGLSQLSHLILGHNNLEGEV  507 (590)
Q Consensus       460 ~~~~~~~~~L~~L~ls~n~l~~---~~~~~-~~~l~~L~~L~L~~n~l~~~~  507 (590)
                        .+...+.+..+....+.+..   ..... ....+.++...+.+|.+....
T Consensus       272 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  272 --GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             --cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence              13334455555555555442   11111 344566777777777666443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.35  E-value=8.3e-08  Score=101.98  Aligned_cols=162  Identities=22%  Similarity=0.294  Sum_probs=112.8

Q ss_pred             CCCcEEecCCCCCCCCCCCCCccccc-CCCCCcEEEeecccccc-cCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762           46 PSLKYLSLSDSTLGTNSSKILDRGLC-SLVHLQELYIYNNDLRG-SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT  123 (590)
Q Consensus        46 ~~L~~L~L~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~  123 (590)
                      .+|++|++++...-.   .-.+..++ -+|.|+.|.+++-.+.. .+.....++|+|..||+|+++++ .+.  .+++++
T Consensus       122 ~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLK  195 (699)
T ss_pred             HhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccc
Confidence            578888888865322   22222333 38888998888865542 23344457889999999999887 553  488899


Q ss_pred             CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762          124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE  203 (590)
Q Consensus       124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  203 (590)
                      +|+.|.+.+-.+........+.++++|+.|+++........           .+...           .-+.-..+|+||
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii~q-----------Ylec~~~LpeLr  253 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KIIEQ-----------YLECGMVLPELR  253 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHHHH-----------HHHhcccCcccc
Confidence            99999888877765556677888999999998876543221           01111           112233478999


Q ss_pred             EEEcCCCcCccccchHHhhcCCCCcEEEccCC
Q 007762          204 YVDLSHMKMNGEFPTWLLENNTNLESLFLVND  235 (590)
Q Consensus       204 ~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~  235 (590)
                      .||.|+..+.+.+.+.+....++|+.+..-++
T Consensus       254 fLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  254 FLDCSGTDINEEILEELLNSHPNLQQIAALDC  285 (699)
T ss_pred             EEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence            99999999988888888888888888766543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.28  E-value=1.8e-08  Score=95.70  Aligned_cols=286  Identities=17%  Similarity=0.078  Sum_probs=138.7

Q ss_pred             CCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccc-cCCCCCcEEEeecc-cccccCCc-ccc
Q 007762           19 KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGL-CSLVHLQELYIYNN-DLRGSLPW-CMA   95 (590)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-~~l~~L~~L~L~~n-~i~~~~~~-~~~   95 (590)
                      ..|+.|.++|++ .....--..+...++++++|++.+|...+   ...-..+ ..+++|++|++..| .+++..-. ...
T Consensus       138 g~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iT---d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKIT---DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceecc---HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            478888899884 22223334455578999999998887322   1111223 34788999999885 34432222 334


Q ss_pred             CCCCCcEEEccccc-cccccCCCCccCCCCCcEEECcCCccccccC-ccccccCCCccEEEccCCcccccccCCCCCCCC
Q 007762           96 NMTSLRILYVSSNQ-LTGSISSSPLVHLTSIEELHLSNNHFQIPIS-LEPLFNHSRLKVFWAKNNEINAEITQSPSLTAP  173 (590)
Q Consensus        96 ~l~~L~~L~ls~n~-l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~-~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  173 (590)
                      .|++|++|+++.|. |++.--....+++.+++.+...+|.-.+... ...-+.+..+..+++..|....+..        
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~--------  285 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED--------  285 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH--------
Confidence            78899999998885 3321111134566777777666664211100 0112334445555544442111100        


Q ss_pred             CcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCc-CccccchHHhhcCCCCcEEEccCCCCCC-CCcCC-CCCCCc
Q 007762          174 NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMK-MNGEFPTWLLENNTNLESLFLVNDSLAG-PFRLP-IHSHKR  250 (590)
Q Consensus       174 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~-~~~~~~  250 (590)
                                        +...-..+..|+.++.+++. +++..-..+..++++|+.+.+..|+.-+ .-... -.+++.
T Consensus       286 ------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  286 ------------------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             ------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence                              01111234455555555543 2222233333455566666665554211 11111 123455


Q ss_pred             ccEEEccCCcCC-CCCchhhhhcCCCCcEEEccCceec-cc----CCcccCCCCCCcEEEccCcccccccchhhhcCCCC
Q 007762          251 LRLLDISNNNFR-GHIPVEIGDVLPGLFSLNISMNALD-GS----IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVN  324 (590)
Q Consensus       251 L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~~~-~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  324 (590)
                      |+.+++..+... +.--......++.|+.+.++.|... +.    +...-..+..|..+.++++....+-.-.....+++
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~  427 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN  427 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence            666666555321 1101122233556666666655432 11    11222334556666666665332222222234667


Q ss_pred             CcEEEccCCc
Q 007762          325 LEYLALSNNS  334 (590)
Q Consensus       325 L~~L~l~~n~  334 (590)
                      |+.+++-.+.
T Consensus       428 Leri~l~~~q  437 (483)
T KOG4341|consen  428 LERIELIDCQ  437 (483)
T ss_pred             cceeeeechh
Confidence            7777766654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.27  E-value=1.6e-08  Score=96.00  Aligned_cols=233  Identities=18%  Similarity=0.121  Sum_probs=110.5

Q ss_pred             CCCcccEEEcCCC-cCccccchHHhhcCCCCcEEEccCCCCCCC--CcCCCCCCCcccEEEccCCc-CCCCCchhhhhcC
Q 007762          198 HQHDLEYVDLSHM-KMNGEFPTWLLENNTNLESLFLVNDSLAGP--FRLPIHSHKRLRLLDISNNN-FRGHIPVEIGDVL  273 (590)
Q Consensus       198 ~~~~L~~L~ls~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~  273 (590)
                      .+++|+.|++..| .++....+.+...|++|++|++++|.....  +......+..++.+...+|. ...+.-......+
T Consensus       188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~  267 (483)
T KOG4341|consen  188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC  267 (483)
T ss_pred             hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence            4556666666653 344444444455666666666666642221  11112334445555444432 1111111122223


Q ss_pred             CCCcEEEccCce-eccc-CCcccCCCCCCcEEEccCcc-cccccchhhhcCCCCCcEEEccCCcC-CCccCccc-cCccc
Q 007762          274 PGLFSLNISMNA-LDGS-IPSSFGNMKFLQLLDVTNNQ-LTGEIPEHLAVGCVNLEYLALSNNSL-EGHMFSRN-FNLTN  348 (590)
Q Consensus       274 ~~L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~i-~~~~~~~~-~~l~~  348 (590)
                      ..+.++++..|. +++. +...-..+..|++++.+++. +++..-..+...+++|+.+.+..|+- +..-...+ .+++.
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence            345555554442 2211 11112334556666665543 22223334445566677776666642 21111111 23566


Q ss_pred             cCceeccCcccccc--CCccccCCCCCCEEEccCCcccccC-----ccccCCCCCccEEECCCCcCcC-CCCcccCCCCC
Q 007762          349 LKWLQLEGNHFVGE--IPQSLSKCFVLEGLFLNNNSLSGMI-----PRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDW  420 (590)
Q Consensus       349 L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~  420 (590)
                      |+.+++.++.....  +...-.+|+.|+.+.++.|......     ...-..+..|..+.|++++... ..-+.+..+++
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~  427 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN  427 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence            66666666543211  1222346677777777766532111     1223445667777777776432 22234556677


Q ss_pred             CcEEEcccCc
Q 007762          421 LQILDISDNN  430 (590)
Q Consensus       421 L~~L~l~~n~  430 (590)
                      |+.+++-+|+
T Consensus       428 Leri~l~~~q  437 (483)
T KOG4341|consen  428 LERIELIDCQ  437 (483)
T ss_pred             cceeeeechh
Confidence            7777777665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=1.3e-07  Score=85.90  Aligned_cols=205  Identities=18%  Similarity=0.203  Sum_probs=103.0

Q ss_pred             CCCCcEEEeecccccc--cCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCc
Q 007762           73 LVHLQELYIYNNDLRG--SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRL  150 (590)
Q Consensus        73 l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L  150 (590)
                      +..++.+||.+|.|++  ++...+.++|.|++|+++.|.+...|.. .-....+|+.|-+.+..+.-......+..++++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4456666666666553  2333445566666666666655432222 112344566665555544322222344555566


Q ss_pred             cEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCcc--ccchHHhhcCCCCc
Q 007762          151 KVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNG--EFPTWLLENNTNLE  228 (590)
Q Consensus       151 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~--~~~~~~~~~l~~L~  228 (590)
                      +.++++.|.+.                 .+.+ ..+.....       -+.++++.+..|....  +... +..-+|++.
T Consensus       149 telHmS~N~~r-----------------q~n~-Dd~c~e~~-------s~~v~tlh~~~c~~~~w~~~~~-l~r~Fpnv~  202 (418)
T KOG2982|consen  149 TELHMSDNSLR-----------------QLNL-DDNCIEDW-------STEVLTLHQLPCLEQLWLNKNK-LSRIFPNVN  202 (418)
T ss_pred             hhhhhccchhh-----------------hhcc-cccccccc-------chhhhhhhcCCcHHHHHHHHHh-HHhhcccch
Confidence            66666555322                 2222 11111111       1234444444442210  1111 123467888


Q ss_pred             EEEccCCCCCCCC-cCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCc------ccCCCCCCc
Q 007762          229 SLFLVNDSLAGPF-RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPS------SFGNMKFLQ  301 (590)
Q Consensus       229 ~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~------~l~~l~~L~  301 (590)
                      .+.+-.|.+.... ......+|.+..|+++.+++.....-.-.+.++.|..|.++++++...+..      .++.+++++
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~  282 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ  282 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence            8888777665532 234556677778888888776333322334478888888888877633222      234455555


Q ss_pred             EEE
Q 007762          302 LLD  304 (590)
Q Consensus       302 ~L~  304 (590)
                      .|+
T Consensus       283 vLN  285 (418)
T KOG2982|consen  283 VLN  285 (418)
T ss_pred             Eec
Confidence            554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=2e-08  Score=101.67  Aligned_cols=159  Identities=27%  Similarity=0.261  Sum_probs=85.7

Q ss_pred             CccccCccccCceeccCccccccCC-----ccccCC--------------------------CCCCEEEccCCcccccCc
Q 007762          340 FSRNFNLTNLKWLQLEGNHFVGEIP-----QSLSKC--------------------------FVLEGLFLNNNSLSGMIP  388 (590)
Q Consensus       340 ~~~~~~l~~L~~L~l~~~~~~~~~~-----~~l~~~--------------------------~~L~~L~l~~n~~~~~~~  388 (590)
                      |..+..+.+|+.|.++++.+.....     ..+.++                          -.|...+++.|.+. ...
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            5556678899999999998763100     000000                          12344455555554 333


Q ss_pred             cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCC
Q 007762          389 RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHS  468 (590)
Q Consensus       389 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  468 (590)
                      .++.-++.|++|+|++|++...  +.+..++.|++|||++|.+.-..........|..|.+++|.++. + .+ +.++.+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L-~g-ie~Lks  255 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-L-RG-IENLKS  255 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHh-h-hh-HHhhhh
Confidence            4555566677777777766532  25556667777777777665333222223346666666665521 1 11 445556


Q ss_pred             CcEEEcCCCcCCCCcc-ccccccCCCCEEECcCCccc
Q 007762          469 LVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       469 L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  504 (590)
                      |+.||+++|-+.+.-. ..+..+..|++|+|.||++-
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6666666665543110 11334555666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=7.5e-07  Score=81.09  Aligned_cols=83  Identities=22%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC-ccccccccCCCCEEECcCCcccCCCcc------cccC
Q 007762          441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVPV------QLCK  513 (590)
Q Consensus       441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~  513 (590)
                      ++++..+.+-.|++........+..++.+..|+|+.++|... ..+.+.+++.|..|-++++++.+.+..      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            455666666666654443333355566777788888887642 234567788888888888877754321      2466


Q ss_pred             CCCCCEEECc
Q 007762          514 LNQLQLLDLS  523 (590)
Q Consensus       514 l~~L~~L~l~  523 (590)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            6777776543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.17  E-value=2.4e-07  Score=83.15  Aligned_cols=163  Identities=24%  Similarity=0.278  Sum_probs=95.9

Q ss_pred             ccCCCcccEEEcCCCcCccccchHHhhcCC---CCcEEEccCCCCCC-----------CCcCCCCCCCcccEEEccCCcC
Q 007762          196 LYHQHDLEYVDLSHMKMNGEFPTWLLENNT---NLESLFLVNDSLAG-----------PFRLPIHSHKRLRLLDISNNNF  261 (590)
Q Consensus       196 l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~-----------~~~~~~~~~~~L~~L~l~~n~l  261 (590)
                      +..+..++.+++|+|.+..+...++.....   +|+..+++.- +++           ....++.+||+|+.+++++|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            445788999999999998777777654444   5555555543 122           1123466889999999999988


Q ss_pred             CCCCchhhhh---cCCCCcEEEccCceecccCCcc-------------cCCCCCCcEEEccCcccccccchh----hhcC
Q 007762          262 RGHIPVEIGD---VLPGLFSLNISMNALDGSIPSS-------------FGNMKFLQLLDVTNNQLTGEIPEH----LAVG  321 (590)
Q Consensus       262 ~~~~~~~~~~---~~~~L~~L~L~~n~~~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~~----~~~~  321 (590)
                      ....|..+..   .-+.|++|.+++|.+....-..             ...-|.|+++.+..|++. ..+..    .+..
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence            7677665433   2467889999888765221111             123366777777777665 33321    1222


Q ss_pred             CCCCcEEEccCCcCCCcc-----CccccCccccCceeccCcccc
Q 007762          322 CVNLEYLALSNNSLEGHM-----FSRNFNLTNLKWLQLEGNHFV  360 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~l~~~~~~  360 (590)
                      -.+|+.+.+..|.|....     ...+..+.+|+.|++.+|.++
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            246666666666654221     111223445555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=2.7e-07  Score=82.80  Aligned_cols=218  Identities=19%  Similarity=0.188  Sum_probs=102.2

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccc---cccCC-------ccccCCCCCcEEEccccccccc
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDL---RGSLP-------WCMANMTSLRILYVSSNQLTGS  113 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i---~~~~~-------~~~~~l~~L~~L~ls~n~l~~~  113 (590)
                      .+..+..++|++|.|+....+.....+.+-.+|+..+++.-..   .+.++       .++-+||+|+..++|+|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3556666666666665533333334444555566666654211   11222       2344567777777777766533


Q ss_pred             cCCC---CccCCCCCcEEECcCCccccccCccc-------------cccCCCccEEEccCCcccccccCCCCCCCCCccc
Q 007762          114 ISSS---PLVHLTSIEELHLSNNHFQIPISLEP-------------LFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL  177 (590)
Q Consensus       114 ~~~~---~l~~l~~L~~L~ls~n~~~~~~~~~~-------------l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L  177 (590)
                      .+..   .+.+-+.|.+|.+++|-+. ++.-..             .+.-+.|+++.+..|++......           
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~-----------  175 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE-----------  175 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH-----------
Confidence            3321   2344566777777666542 222111             12345566665555544211000           


Q ss_pred             ceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHH----hhcCCCCcEEEccCCCCCCCC----cCCCCCCC
Q 007762          178 SRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL----LENNTNLESLFLVNDSLAGPF----RLPIHSHK  249 (590)
Q Consensus       178 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~  249 (590)
                                   .....+..-..|+++.+..|.+..+....+    +..+.+|+.|++..|.++...    ..++...+
T Consensus       176 -------------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         176 -------------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             -------------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence                         011122233456666666665543322111    124555666666655544321    12233444


Q ss_pred             cccEEEccCCcCCCCCchhhhhc-----CCCCcEEEccCcee
Q 007762          250 RLRLLDISNNNFRGHIPVEIGDV-----LPGLFSLNISMNAL  286 (590)
Q Consensus       250 ~L~~L~l~~n~l~~~~~~~~~~~-----~~~L~~L~L~~n~~  286 (590)
                      .|+.|.+.+|-++......+...     .|+|..|...+|..
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            56666666665544433333221     34555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.12  E-value=5.9e-08  Score=98.42  Aligned_cols=128  Identities=28%  Similarity=0.429  Sum_probs=91.3

Q ss_pred             CCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCc-cccCCC
Q 007762           20 SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPW-CMANMT   98 (590)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~   98 (590)
                      .|.+.++++|++   ......+. -++.|+.|+|+.|+++.    .  ..+..|++|++|||++|.+. .+|. ....|.
T Consensus       165 ~L~~a~fsyN~L---~~mD~SLq-ll~ale~LnLshNk~~~----v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~  233 (1096)
T KOG1859|consen  165 KLATASFSYNRL---VLMDESLQ-LLPALESLNLSHNKFTK----V--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK  233 (1096)
T ss_pred             hHhhhhcchhhH---HhHHHHHH-HHHHhhhhccchhhhhh----h--HHHHhcccccccccccchhc-cccccchhhhh
Confidence            466667777744   22333343 56788888888888754    3  36788888888888888887 4443 222344


Q ss_pred             CCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccc
Q 007762           99 SLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINA  162 (590)
Q Consensus        99 ~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  162 (590)
                       |+.|.+++|.++ ++-.  +.++++|+.||+++|-+.+-.....+..+..|+.|++.+|++..
T Consensus       234 -L~~L~lrnN~l~-tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  234 -LQLLNLRNNALT-TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             -heeeeecccHHH-hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence             888888888877 5554  78888888888888877765556677778888888888887643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.09  E-value=9.9e-06  Score=67.93  Aligned_cols=128  Identities=23%  Similarity=0.314  Sum_probs=76.0

Q ss_pred             ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc
Q 007762            9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG   88 (590)
Q Consensus         9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~   88 (590)
                      +|+..+|.++++|+.+.+... +   ..+....++.+++|+.+.+..+ +.    .+...+|..+++++.+.+.+ .+..
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~~-~---~~I~~~~F~~~~~l~~i~~~~~-~~----~i~~~~F~~~~~l~~i~~~~-~~~~   71 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPNT-I---KKIGENAFSNCTSLKSINFPNN-LT----SIGDNAFSNCKSLESITFPN-NLKS   71 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TS----CE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred             EECHHHHhCCCCCCEEEECCC-e---eEeChhhccccccccccccccc-cc----ccceeeeecccccccccccc-cccc
Confidence            578899999999999999853 2   4566666658889999999886 43    47778899998999999976 4444


Q ss_pred             cCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCcc
Q 007762           89 SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLK  151 (590)
Q Consensus        89 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~  151 (590)
                      ....+|..+++|+.+++..+ +. .++...+.++ +|+.+.+..+ +. .++...|.++++|+
T Consensus        72 i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~~-~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPSN-IT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             E-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TTB--S-S----GGG------
T ss_pred             cccccccccccccccccCcc-cc-EEchhhhcCC-CceEEEECCC-cc-EECCccccccccCC
Confidence            55678888999999999875 54 6777678887 9999998763 22 34556677776664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.05  E-value=3.5e-06  Score=54.65  Aligned_cols=36  Identities=36%  Similarity=0.603  Sum_probs=19.0

Q ss_pred             CCCEEECcCCcccCCCcccccCCCCCCEEECcCCccC
Q 007762          492 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH  528 (590)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (590)
                      +|++|++++|+++ .+|..+.+|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=1e-05  Score=52.53  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=29.3

Q ss_pred             CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762          467 HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      ++|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46888999999998 45666888999999999999887

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=4.9e-07  Score=72.62  Aligned_cols=85  Identities=22%  Similarity=0.354  Sum_probs=54.2

Q ss_pred             ccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECc
Q 007762          444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS  523 (590)
Q Consensus       444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  523 (590)
                      |+.+++++|.+ ..+|...-..++.++.|++++|.+. .+|+.+..++.|+.|+++.|++. ..|..+..+.++-.|+..
T Consensus        55 l~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            33344444444 2444442344556777777777777 55666777777777777777777 456666667777777777


Q ss_pred             CCccCCCCc
Q 007762          524 NNNLHGPIP  532 (590)
Q Consensus       524 ~n~l~~~~p  532 (590)
                      +|.+. .+|
T Consensus       132 ~na~~-eid  139 (177)
T KOG4579|consen  132 ENARA-EID  139 (177)
T ss_pred             CCccc-cCc
Confidence            77776 444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.88  E-value=3e-05  Score=66.96  Aligned_cols=130  Identities=19%  Similarity=0.252  Sum_probs=89.7

Q ss_pred             CCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCC
Q 007762           20 SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTS   99 (590)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   99 (590)
                      +=+.+++.+.++    ...+.+..-......+||++|.+..    +  ..|..++.|.+|.|.+|+|+...|.--..+++
T Consensus        20 ~e~e~~LR~lki----p~ienlg~~~d~~d~iDLtdNdl~~----l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~   89 (233)
T KOG1644|consen   20 RERELDLRGLKI----PVIENLGATLDQFDAIDLTDNDLRK----L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPN   89 (233)
T ss_pred             cccccccccccc----cchhhccccccccceecccccchhh----c--ccCCCccccceEEecCCcceeeccchhhhccc
Confidence            345667776644    1222233234567788999988743    3  46888888999999999998766666667788


Q ss_pred             CcEEEccccccccccCCCCccCCCCCcEEECcCCccccc--cCccccccCCCccEEEccCCc
Q 007762          100 LRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIP--ISLEPLFNHSRLKVFWAKNNE  159 (590)
Q Consensus       100 L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~--~~~~~l~~l~~L~~l~l~~~~  159 (590)
                      |+.|.+.+|.|..--....+..|++|++|.+-+|.+...  .-..++..+++|++|++.+-.
T Consensus        90 l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   90 LKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999999998876222222467788999999888876532  123456778888888887654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=1.6e-06  Score=69.71  Aligned_cols=112  Identities=23%  Similarity=0.359  Sum_probs=52.0

Q ss_pred             cccEEEcCCCcCccccchHH--hhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcE
Q 007762          201 DLEYVDLSHMKMNGEFPTWL--LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFS  278 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  278 (590)
                      .+..+++++|.+. .+++..  +.....|...++++|.+....+..-..++.++.+++++|.+. .+|..+.. ++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhh
Confidence            3455667777654 333322  122334444455555544433332233444555555555554 44544333 455555


Q ss_pred             EEccCceecccCCcccCCCCCCcEEEccCcccccccchh
Q 007762          279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH  317 (590)
Q Consensus       279 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  317 (590)
                      ++++.|++. ..|..+..+.++-.|+..+|... +++..
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            555555544 34444444444444555444444 44433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=7.4e-05  Score=73.46  Aligned_cols=136  Identities=18%  Similarity=0.254  Sum_probs=91.4

Q ss_pred             ccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccC-cCCCCCCCCCCCCccc
Q 007762          367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN-NISGSLPSCFHPLSIE  445 (590)
Q Consensus       367 l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~  445 (590)
                      +..|..++.|++++|.++ .+|.   -..+|++|.+++|.-...+|..+  .++|++|++++| .+. .+     +.+|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL-----P~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL-----PESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc-----ccccc
Confidence            445788999999999887 4452   23579999999876545667655  358999999998 443 23     35688


Q ss_pred             EEECcCccCC--CCCCccccccCCCCcEEEcCCCc-CC-CCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEE
Q 007762          446 HVHLSKNMLH--GQLKRGTFFNYHSLVTLDLSYNR-LN-GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD  521 (590)
Q Consensus       446 ~L~l~~n~~~--~~~~~~~~~~~~~L~~L~ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  521 (590)
                      .|+++++...  +.+|       ++|+.|.+.+++ .. ..+|..+.  ++|++|++++|+.. ..|..+.  .+|+.|+
T Consensus       116 ~L~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~  183 (426)
T PRK15386        116 SLEIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSIT  183 (426)
T ss_pred             eEEeCCCCCcccccCc-------chHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence            8888766542  2233       357888885433 11 12222222  68999999999876 4554443  5899999


Q ss_pred             CcCCc
Q 007762          522 LSNNN  526 (590)
Q Consensus       522 l~~n~  526 (590)
                      ++.|.
T Consensus       184 ls~n~  188 (426)
T PRK15386        184 LHIEQ  188 (426)
T ss_pred             ecccc
Confidence            98773

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=0.0001  Score=72.46  Aligned_cols=54  Identities=17%  Similarity=0.085  Sum_probs=30.1

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCC
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN  381 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  381 (590)
                      +.+++.|++++|.+... |.   -..+|++|.+++|.-...+|..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            56677777777765542 31   12356777776654433444433  245666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=7.4e-05  Score=64.65  Aligned_cols=132  Identities=22%  Similarity=0.292  Sum_probs=97.3

Q ss_pred             CcEEecCCCCCCCCCCCCCcccccC-CCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCc
Q 007762           48 LKYLSLSDSTLGTNSSKILDRGLCS-LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE  126 (590)
Q Consensus        48 L~~L~L~~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~  126 (590)
                      =+.++|++.++..    +  +.++. +.....+||++|.+..  -..|..+++|.+|.+.+|.|+ .|....-..+++|+
T Consensus        21 e~e~~LR~lkip~----i--enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~   91 (233)
T KOG1644|consen   21 ERELDLRGLKIPV----I--ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK   91 (233)
T ss_pred             ccccccccccccc----h--hhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence            5677777776643    2  11222 3457889999998873  335778999999999999999 77663445578899


Q ss_pred             EEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEE
Q 007762          127 ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVD  206 (590)
Q Consensus       127 ~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  206 (590)
                      .|.+.+|.+..-.....+..|++|+.|.+-+|++.......                         ...+..+++|+.||
T Consensus        92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR-------------------------~yvl~klp~l~~LD  146 (233)
T KOG1644|consen   92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR-------------------------LYVLYKLPSLRTLD  146 (233)
T ss_pred             eEEecCcchhhhhhcchhccCCccceeeecCCchhcccCce-------------------------eEEEEecCcceEee
Confidence            99999999987777788999999999999888765432111                         12355678999999


Q ss_pred             cCCCcCc
Q 007762          207 LSHMKMN  213 (590)
Q Consensus       207 ls~~~~~  213 (590)
                      +....-.
T Consensus       147 F~kVt~~  153 (233)
T KOG1644|consen  147 FQKVTRK  153 (233)
T ss_pred             hhhhhHH
Confidence            9876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=4.1e-05  Score=81.85  Aligned_cols=128  Identities=21%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             CCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCC-CCchhhhhcCCCC
Q 007762          198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRG-HIPVEIGDVLPGL  276 (590)
Q Consensus       198 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L  276 (590)
                      .+|.|++|.+++-.+.......++.++|+|..|+++++.++..  ..+.++++|+.|.+.+-.+.. ..-..++. +++|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L  222 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKL  222 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCC
Confidence            3567777777776554333344456677777777777766653  335566677777666665542 11123344 6677


Q ss_pred             cEEEccCceeccc------CCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEE
Q 007762          277 FSLNISMNALDGS------IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL  328 (590)
Q Consensus       277 ~~L~L~~n~~~~~------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  328 (590)
                      +.||+|.......      ..+.-..+|+|+.||.++..+...+-+.....-++|+.+
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            7777766543311      111122356666666666655544443333333444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.49  E-value=0.00036  Score=58.37  Aligned_cols=122  Identities=19%  Similarity=0.238  Sum_probs=45.0

Q ss_pred             ccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCC
Q 007762          293 SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFV  372 (590)
Q Consensus       293 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  372 (590)
                      .|.++++|+.+.+.. .+. .++...+..+.+|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            344555555555543 233 444454555555555555543 4333344455555555555543 222223344555666


Q ss_pred             CCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCC
Q 007762          373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL  421 (590)
Q Consensus       373 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  421 (590)
                      ++.+.+..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666665443 333333445555 666666554 2232334455555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=6.3e-06  Score=74.50  Aligned_cols=80  Identities=26%  Similarity=0.353  Sum_probs=38.8

Q ss_pred             CcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEc
Q 007762           76 LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWA  155 (590)
Q Consensus        76 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l  155 (590)
                      .+.|++.+|.+++  .....+++.|+.|.||=|+|+ .+..  +..|++|++|+|..|.|..-..+..+.++++|++||+
T Consensus        21 vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   21 VKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             hhhhcccCCCccH--HHHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444444444442  112234455555555555554 3332  4555555555555555543223344556666666666


Q ss_pred             cCCcc
Q 007762          156 KNNEI  160 (590)
Q Consensus       156 ~~~~~  160 (590)
                      ..|+.
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            66543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.16  E-value=4.8e-05  Score=79.94  Aligned_cols=63  Identities=24%  Similarity=0.140  Sum_probs=27.8

Q ss_pred             CCCCCcEEEeeccc-ccccCCcccc-CCCCCcEEEccccc-cccccCCCCccCCCCCcEEECcCCc
Q 007762           72 SLVHLQELYIYNND-LRGSLPWCMA-NMTSLRILYVSSNQ-LTGSISSSPLVHLTSIEELHLSNNH  134 (590)
Q Consensus        72 ~l~~L~~L~L~~n~-i~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~l~~l~~L~~L~ls~n~  134 (590)
                      .+++|+.|+++++. +++..-.++. .|++|++|.+.+|. ++..--......+++|++|++++|.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            34555555555555 3332222222 25555555554444 3311111123344555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.15  E-value=4.4e-05  Score=80.24  Aligned_cols=14  Identities=29%  Similarity=0.226  Sum_probs=7.3

Q ss_pred             cCCCCEEECcCCcc
Q 007762          490 LSQLSHLILGHNNL  503 (590)
Q Consensus       490 l~~L~~L~L~~n~l  503 (590)
                      +..++.+++.++..
T Consensus       426 ~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRV  439 (482)
T ss_pred             hhccccCCccCccc
Confidence            44555555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.00026  Score=64.13  Aligned_cols=86  Identities=26%  Similarity=0.402  Sum_probs=58.6

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecc--cccccCCccccCCCCCcEEEccccccccccCC-CCcc
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNN--DLRGSLPWCMANMTSLRILYVSSNQLTGSISS-SPLV  120 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~l~  120 (590)
                      .+..|+.|++.+..++.    +  ..|..+++|++|.++.|  .+.+.++.....+|+|++|++++|+|. .+.. ..+.
T Consensus        41 ~~~~le~ls~~n~gltt----~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~pl~  113 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT----L--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRPLK  113 (260)
T ss_pred             cccchhhhhhhccceee----c--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccchhh
Confidence            45567777777776643    2  46777888888888888  666566655667788888888888876 2211 1255


Q ss_pred             CCCCCcEEECcCCccc
Q 007762          121 HLTSIEELHLSNNHFQ  136 (590)
Q Consensus       121 ~l~~L~~L~ls~n~~~  136 (590)
                      .+.+|..|++.+|...
T Consensus       114 ~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhcchhhhhcccCCcc
Confidence            5667777788777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.97  E-value=0.00028  Score=63.88  Aligned_cols=72  Identities=19%  Similarity=0.080  Sum_probs=40.4

Q ss_pred             cccCCCCcEEEcCCCcCCCC-ccccccccCCCCEEECcCCcccCCC---cccccCCCCCCEEECcCCccCCCCcccc
Q 007762          463 FFNYHSLVTLDLSYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGEV---PVQLCKLNQLQLLDLSNNNLHGPIPPCF  535 (590)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~p~~~  535 (590)
                      ...+++|++|++++|++... --..+..+.+|..|++.+|..+...   -..|.-+++|++||-....=. ..|.+.
T Consensus        87 ~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~-Ea~~~~  162 (260)
T KOG2739|consen   87 AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE-EAPEAD  162 (260)
T ss_pred             hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc-cccccc
Confidence            34457777777777777631 0112445666777777777665421   234666777777665543332 344443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=5.9e-05  Score=68.40  Aligned_cols=99  Identities=23%  Similarity=0.244  Sum_probs=59.4

Q ss_pred             CCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc-cccccccCCCCEEE
Q 007762          419 DWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLI  497 (590)
Q Consensus       419 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~  497 (590)
                      .+.+.|++.+|.++ .+.-+..++.|+.|.|+-|+++. +.+  +..|+.|+.|+|+.|.|.+.. -..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIss-L~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISS-LAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCcc-HHHHHHhcccceeEEeecccccc-chh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            34555666666655 22223335555566666555532 221  677778888888888776421 13456777888888


Q ss_pred             CcCCcccCCCcc-----cccCCCCCCEEE
Q 007762          498 LGHNNLEGEVPV-----QLCKLNQLQLLD  521 (590)
Q Consensus       498 L~~n~l~~~~~~-----~~~~l~~L~~L~  521 (590)
                      |..|+-.+.-+.     .+..||+|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            887777665443     355677777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.72  E-value=0.004  Score=33.42  Aligned_cols=19  Identities=58%  Similarity=0.917  Sum_probs=9.2

Q ss_pred             CCEEECcCCccCCCCccccc
Q 007762          517 LQLLDLSNNNLHGPIPPCFD  536 (590)
Q Consensus       517 L~~L~l~~n~l~~~~p~~~~  536 (590)
                      |++||+++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.53  E-value=0.0054  Score=32.89  Aligned_cols=19  Identities=37%  Similarity=0.508  Sum_probs=9.7

Q ss_pred             CCEEECcCCcccCCCccccc
Q 007762          493 LSHLILGHNNLEGEVPVQLC  512 (590)
Q Consensus       493 L~~L~L~~n~l~~~~~~~~~  512 (590)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.66  E-value=0.00051  Score=70.32  Aligned_cols=39  Identities=31%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CcccEEEccCCcCCCCCchhhhhc---CCCCcEEEccCceec
Q 007762          249 KRLRLLDISNNNFRGHIPVEIGDV---LPGLFSLNISMNALD  287 (590)
Q Consensus       249 ~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~L~~n~~~  287 (590)
                      +.++.++++.|.+++.....+.+.   ++.++.+.+++|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            456677777776665544443321   346677777777665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.58  E-value=0.073  Score=26.36  Aligned_cols=13  Identities=62%  Similarity=0.805  Sum_probs=4.9

Q ss_pred             CCCEEECcCCccC
Q 007762          516 QLQLLDLSNNNLH  528 (590)
Q Consensus       516 ~L~~L~l~~n~l~  528 (590)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.96  E-value=0.03  Score=49.02  Aligned_cols=81  Identities=20%  Similarity=0.188  Sum_probs=40.0

Q ss_pred             CCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCccccc-CCCCCcEEEeecc-cccccCCccccCC
Q 007762           20 SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLC-SLVHLQELYIYNN-DLRGSLPWCMANM   97 (590)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~~~~~l   97 (590)
                      .++.++.+++  ++.....+.+. .++.++.|.+.+|..-+   .---+.+. -.++|+.|++++| +|++..-..+..+
T Consensus       102 ~IeaVDAsds--~I~~eGle~L~-~l~~i~~l~l~~ck~~d---D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  102 KIEAVDASDS--SIMYEGLEHLR-DLRSIKSLSLANCKYFD---DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             eEEEEecCCc--hHHHHHHHHHh-ccchhhhheeccccchh---hHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence            3556666666  55566666666 66667777776665321   00001111 2344555555544 3343333344444


Q ss_pred             CCCcEEEcc
Q 007762           98 TSLRILYVS  106 (590)
Q Consensus        98 ~~L~~L~ls  106 (590)
                      ++|+.|.++
T Consensus       176 knLr~L~l~  184 (221)
T KOG3864|consen  176 KNLRRLHLY  184 (221)
T ss_pred             hhhHHHHhc
Confidence            555544443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.96  E-value=0.27  Score=27.45  Aligned_cols=16  Identities=50%  Similarity=0.576  Sum_probs=9.7

Q ss_pred             CCCCEEECcCCccCCC
Q 007762          515 NQLQLLDLSNNNLHGP  530 (590)
Q Consensus       515 ~~L~~L~l~~n~l~~~  530 (590)
                      ++|+.|+|++|+|...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.96  E-value=0.27  Score=27.45  Aligned_cols=16  Identities=50%  Similarity=0.576  Sum_probs=9.7

Q ss_pred             CCCCEEECcCCccCCC
Q 007762          515 NQLQLLDLSNNNLHGP  530 (590)
Q Consensus       515 ~~L~~L~l~~n~l~~~  530 (590)
                      ++|+.|+|++|+|...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.63  E-value=0.0031  Score=64.71  Aligned_cols=193  Identities=25%  Similarity=0.244  Sum_probs=125.4

Q ss_pred             CCCeEeCcCCcCccccccchHhhh---cCCCCcEEecCCCCCCCCCCCCCcccccCC-CCCcEEEeecccccc----cCC
Q 007762           20 SLELLDMECTRIALNTSFLQIISE---SMPSLKYLSLSDSTLGTNSSKILDRGLCSL-VHLQELYIYNNDLRG----SLP   91 (590)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~~----~~~   91 (590)
                      .+..+.+.+|  .+....+..+..   ..+.|..|++++|.+.+.+.......+... ..|++|++..|.++.    .+.
T Consensus        88 ~l~~L~L~~~--~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   88 SLLHLSLANN--RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA  165 (478)
T ss_pred             hHHHhhhhhC--ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence            3788889998  444444444433   567889999999999886666655555554 668889998888875    334


Q ss_pred             ccccCCCCCcEEEcccccccc----ccCCCCcc----CCCCCcEEECcCCccccccC---ccccccCCC-ccEEEccCCc
Q 007762           92 WCMANMTSLRILYVSSNQLTG----SISSSPLV----HLTSIEELHLSNNHFQIPIS---LEPLFNHSR-LKVFWAKNNE  159 (590)
Q Consensus        92 ~~~~~l~~L~~L~ls~n~l~~----~~~~~~l~----~l~~L~~L~ls~n~~~~~~~---~~~l~~l~~-L~~l~l~~~~  159 (590)
                      ..+.....++.++++.|.+..    .++. .+.    ...++++|++++|.++....   ...+...+. +..+++..|.
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            556668889999999987630    1111 222    46678999999988762211   122344444 6668888887


Q ss_pred             ccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCC-CcccEEEcCCCcCccccchHH---hhcCCCCcEEEccCC
Q 007762          160 INAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQ-HDLEYVDLSHMKMNGEFPTWL---LENNTNLESLFLVND  235 (590)
Q Consensus       160 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~  235 (590)
                      +.+....                        ...+.+..+ ..+++++++.|.+.+....++   ...++.++.+.+++|
T Consensus       245 l~d~g~~------------------------~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  245 LGDVGVE------------------------KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             cchHHHH------------------------HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence            6544211                        122333334 577888888888875544333   345668888888888


Q ss_pred             CCCC
Q 007762          236 SLAG  239 (590)
Q Consensus       236 ~~~~  239 (590)
                      .+..
T Consensus       301 ~l~~  304 (478)
T KOG4308|consen  301 PLTD  304 (478)
T ss_pred             cccc
Confidence            8776

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.55  E-value=0.017  Score=51.49  Aligned_cols=82  Identities=21%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             cccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEEC
Q 007762          443 SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL  522 (590)
Q Consensus       443 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  522 (590)
                      ..+.||++.|.+ ..+... |+-++.|..||++.|++. ..|..+.....+..+++..|..+ ..|.++...|.++++++
T Consensus        43 r~tvld~~s~r~-vn~~~n-~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   43 RVTVLDLSSNRL-VNLGKN-FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             eeeeehhhhhHH-Hhhccc-hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            344444444443 122222 666778899999999998 78888888889999999988887 78999999999999999


Q ss_pred             cCCccC
Q 007762          523 SNNNLH  528 (590)
Q Consensus       523 ~~n~l~  528 (590)
                      -+|++.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.85  E-value=0.014  Score=51.99  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=43.1

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT  123 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~  123 (590)
                      .+.+.+.||++.+.+..     ....|+.+..|..||++.|.+. ..|..+..+..+++++...|..+ ..|. .+...+
T Consensus        40 ~~kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~  111 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP  111 (326)
T ss_pred             ccceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence            44555555555554422     1134444455555555555554 44555555555555555555544 4444 455555


Q ss_pred             CCcEEECcCCcc
Q 007762          124 SIEELHLSNNHF  135 (590)
Q Consensus       124 ~L~~L~ls~n~~  135 (590)
                      .++++++-.+.+
T Consensus       112 ~~k~~e~k~~~~  123 (326)
T KOG0473|consen  112 HPKKNEQKKTEF  123 (326)
T ss_pred             CcchhhhccCcc
Confidence            555555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.07  E-value=0.56  Score=26.11  Aligned_cols=14  Identities=36%  Similarity=0.472  Sum_probs=6.9

Q ss_pred             CCCCEEECcCCccc
Q 007762          491 SQLSHLILGHNNLE  504 (590)
Q Consensus       491 ~~L~~L~L~~n~l~  504 (590)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.07  E-value=0.56  Score=26.11  Aligned_cols=14  Identities=36%  Similarity=0.472  Sum_probs=6.9

Q ss_pred             CCCCEEECcCCccc
Q 007762          491 SQLSHLILGHNNLE  504 (590)
Q Consensus       491 ~~L~~L~L~~n~l~  504 (590)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.77  E-value=0.13  Score=28.07  Aligned_cols=13  Identities=31%  Similarity=0.452  Sum_probs=4.3

Q ss_pred             CCCEEECcCCccc
Q 007762          492 QLSHLILGHNNLE  504 (590)
Q Consensus       492 ~L~~L~L~~n~l~  504 (590)
                      +|++|++++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3334444444333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.45  E-value=0.12  Score=45.37  Aligned_cols=35  Identities=23%  Similarity=0.201  Sum_probs=20.1

Q ss_pred             CCcEEECcCCccccccCccccccCCCccEEEccCCc
Q 007762          124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNE  159 (590)
Q Consensus       124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~  159 (590)
                      .++.++.+++.+. .++...+.++++++.+.+..|.
T Consensus       102 ~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHH-HHHHHHHhccchhhhheecccc
Confidence            4556666666554 3444555666666666665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	590
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-35
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-35
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		9e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 245/544 (45%), Gaps = 71/544 (13%)
Query: 17  HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHL 76
              SLE+LD+    I+       ++S+    LK+L++S    G   S  +D   C  V+L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNL 199
Query: 77  QELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
           + L + +N+    +P+ + + ++L+ L +S N+L+G  S + +   T ++ L++S+N F 
Sbjct: 200 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 257
Query: 137 IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF- 195
            PI   PL     L+      N+   EI     L+     L+ L LS  +  G + P F 
Sbjct: 258 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 196 -----------------------LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL 232
                                  L     L+ +DLS  + +GE P  L   + +L +L L
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 233 VNDSLAGPF--RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSI 290
            +++ +GP    L  +    L+ L + NN F G IP  + +    L SL++S N L G+I
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 431
Query: 291 PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLK 350
           PSS G++  L+ L +  N L GEIP+ L      LE L L  N L G + S   N TNL 
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP 410
           W+ L  N   GEIP+ + +   L  L L+NNS SG IP  LG+   L  + +  N   G 
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIE-HVHLSKNMLHGQLKRG-------- 461
           IP       + Q   I+ N I+G          ++   H + N+L  Q  R         
Sbjct: 551 IPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 462 -----------------TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
                            TF N  S++ LD+SYN L+G I   +  +  L  L LGHN++ 
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 505 GEVP 508
           G +P
Sbjct: 667 GSIP 670

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 245/544 (45%), Gaps = 71/544 (13%)
Query: 17  HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHL 76
              SLE+LD+    I+       ++S+    LK+L++S    G   S  +D   C  V+L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNL 202
Query: 77  QELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
           + L + +N+    +P+ + + ++L+ L +S N+L+G  S + +   T ++ L++S+N F 
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260
Query: 137 IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF- 195
            PI   PL     L+      N+   EI     L+     L+ L LS  +  G + P F 
Sbjct: 261 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 196 -----------------------LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL 232
                                  L     L+ +DLS  + +GE P  L   + +L +L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 233 VNDSLAGPF--RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSI 290
            +++ +GP    L  +    L+ L + NN F G IP  + +    L SL++S N L G+I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 434
Query: 291 PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLK 350
           PSS G++  L+ L +  N L GEIP+ L      LE L L  N L G + S   N TNL 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP 410
           W+ L  N   GEIP+ + +   L  L L+NNS SG IP  LG+   L  + +  N   G 
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIE-HVHLSKNMLHGQLKRG-------- 461
           IP       + Q   I+ N I+G          ++   H + N+L  Q  R         
Sbjct: 554 IPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 462 -----------------TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
                            TF N  S++ LD+SYN L+G I   +  +  L  L LGHN++ 
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 505 GEVP 508
           G +P
Sbjct: 670 GSIP 673

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 290 IPSSFGNMKFLQLLDVTN-NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN 348
           IPSS  N+ +L  L +   N L G IP  +A                          LT 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 349 LKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE 408
           L +L +   +  G IP  LS+   L  L  + N+LSG +P  + +L  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 409 GPIPVEFCQLDWL-QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ---------- 457
           G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G           
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 458 ------LKRGTFFNY------HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505
                  K    F+        +L  LDL  NR+ G++   +  L  L  L +  NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 506 EVP 508
           E+P
Sbjct: 283 EIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 363 IPQSLSKCFVLEGLFLNN-NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
           IP SL+    L  L++   N+L G IP  +  LT+L ++ +   ++ G IP    Q+  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 422 QILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVT-LDLSYNRL 479
             LD S N +SG+LP     L ++  +    N + G +   ++ ++  L T + +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL 186
Query: 480 NGSISDWVDGLSQLSHLILGHNNLEGEVPV 509
            G I      L+ L+ + L  N LEG+  V
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 156/347 (44%), Gaps = 40/347 (11%)
Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L +L ++   NN L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 62  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 116
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            L NN       ++PL N + L      +N I ++I+    LT+    L +LS    +G+
Sbjct: 117 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLS----FGN 164
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            V   K L +   LE +D+S  K++      +L   TNLESL   N+ ++    L I ++
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 221
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             L  L ++ N  +     +IG +  L  L  L+++ N +    P     +  L  L + 
Sbjct: 222 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 272
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
            NQ++   P     G   L  L L+ N LE    S   NL NL +L L  N+     P  
Sbjct: 273 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 325
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
           +S    L+ LF  NN +S +    L NLT +  +    N +    P+
Sbjct: 326 VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 370

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 39/347 (11%)
Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L +L ++   NN L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            L NN       ++PL N + L      +N I ++I+    LT+    L +LS SS    
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSSNQ-- 162
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            V   K L +   LE +D+S  K++      +L   TNLESL   N+ ++    L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             L  L ++ N  +     +IG +  L  L  L+++ N +    P     +  L  L + 
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
            NQ++   P     G   L  L L+ N LE    S   NL NL +L L  N+     P  
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
           +S    L+ LF +NN +S +    L NLT +  +    N +    P+
Sbjct: 323 VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 367

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 156/347 (44%), Gaps = 40/347 (11%)
Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L +L ++   NN L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 117
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            L NN       ++PL N + L      +N I ++I+    LT+    L +LS    +G+
Sbjct: 118 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLS----FGN 165
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            V   K L +   LE +D+S  K++      +L   TNLESL   N+ ++    L I ++
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 222
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             L  L ++ N  +     +IG +  L  L  L+++ N +    P     +  L  L + 
Sbjct: 223 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
            NQ++   P     G   L  L L+ N LE    S   NL NL +L L  N+     P  
Sbjct: 274 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 326
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
           +S    L+ LF  NN +S +    L NLT +  +    N +    P+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 371

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 157/347 (45%), Gaps = 40/347 (11%)
Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L +L ++   NN L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            L NN       ++PL N + L      +N I ++I+    LT+    L +L+    +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLN----FGN 160
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            V   K L +   LE +D+S  K++      +L   TNLESL   N+ ++    L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             L  L ++ N  +     +IG +  L  L  L+++ N +    P     +  L  L + 
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
            NQ++   P     G   L  L L+ N LE    S   NL NL +L L  N+     P  
Sbjct: 269 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 321
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
           +S    L+ LF +NN +S +    L NLT +  +    N +    P+
Sbjct: 322 VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 366

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 39/347 (11%)
Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L +L ++   NN L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            L NN       ++PL N + L      +N I ++I+    LT+    L +LS SS   +
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSS---N 161
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            V   K L +   LE +D+S  K++      +L   TNLESL   N+ ++    L I ++
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             L  L ++ N  +     +IG +  L  L  L+++ N +    P     +  L  L + 
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
            NQ++   P     G   L  L L+ N LE    S   NL NL +L L  N+     P  
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
           +S    L+ LF  NN +S +    L NLT +  +    N +    P+
Sbjct: 323 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 367

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 40/347 (11%)
Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L +L ++   NN L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            L NN       ++PL N + L      +N I ++I+    LT+    L +L+    +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLN----FGN 160
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            V   K L +   LE +D+S  K++      +L   TNLESL   N+ ++    L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             L  L ++ N  +     +IG +  L  L  L+++ N +    P     +  L  L + 
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
            NQ++   P     G   L  L L+ N LE    S   NL NL +L L  N+     P  
Sbjct: 269 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 321
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
           +S    L+ LF  NN +S +    L NLT +  +    N +    P+
Sbjct: 322 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 366

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 155/347 (44%), Gaps = 39/347 (11%)
Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L +L ++   NN L    P  + N+T L  + +++NQ+      +PL +LT++  L
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            L NN       ++PL N + L      +N I ++I+    LT+    L +L+ SS    
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLNFSSNQ-- 162
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            V   K L +   LE +D+S  K++      +L   TNLESL   N+ ++    L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             L  L ++ N  +     +IG +  L  L  L+++ N +    P     +  L  L + 
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
            NQ++   P     G   L  L L+ N LE    S   NL NL +L L  N+     P  
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
           +S    L+ LF  NN +S +    L NLT +  +    N +    P+
Sbjct: 323 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 367

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	590
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-105
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  343 bits (882), Expect = e-109
 Identities = 144/513 (28%), Positives = 230/513 (44%), Gaps = 24/513 (4%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPW--CMANMTSLR 101
           S+  L+ L LS+S +  + S     G      L  L +  N L G +     + + + L+
Sbjct: 75  SLTGLESLFLSNSHINGSVS-----GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 102 ILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF--QIPISLEPLFNHSRLKVFWAKNNE 159
            L VSSN L      S  + L S+E L LS N       +          LK      N+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 160 INAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTW 219
           I+ ++  S         L  L +SS      I P FL     L+++D+S  K++G+F   
Sbjct: 190 ISGDVDVS-RCV----NLEFLDVSSNNFSTGI-P-FLGDCSALQHLDISGNKLSGDFSRA 242

Query: 220 LLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL 279
           +    T L+ L + ++   GP  +P    K L+ L ++ N F G IP  +      L  L
Sbjct: 243 IS-TCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 280 NISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM 339
           ++S N   G++P  FG+   L+ L +++N  +GE+P    +    L+ L LS N   G +
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

Query: 340 FSRNFNLT-NLKWLQLEGNHFVGEIPQSLSKCF--VLEGLFLNNNSLSGMIPRWLGNLTR 396
                NL+ +L  L L  N+F G I  +L +     L+ L+L NN  +G IP  L N + 
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 397 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLH 455
           L  + +  N+L G IP     L  L+ L +  N + G +P     + ++E + L  N L 
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 456 GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 515
           G++      N  +L  + LS NRL G I  W+  L  L+ L L +N+  G +P +L    
Sbjct: 480 GEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 516 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 548
            L  LDL+ N  +G IP      +   + +  +
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  333 bits (855), Expect = e-105
 Identities = 142/536 (26%), Positives = 231/536 (43%), Gaps = 23/536 (4%)

Query: 2   SSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTN 61
           SS  ++   +  G     SLE+LD+    I+       ++S+    LK+L++S + +   
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--- 190

Query: 62  SSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVH 121
           S  +    +   V+L+ L + +N+    +P+ + + ++L+ L +S N+L+G  S + +  
Sbjct: 191 SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-IST 245

Query: 122 LTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLS 181
            T ++ L++S+N F  PI   P      L+      N+   EI     L+     L+ L 
Sbjct: 246 CTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEI--PDFLSGACDTLTGLD 300

Query: 182 LSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF 241
           LS  +  G + P F      LE + LS    +GE P   L     L+ L L  +  +G  
Sbjct: 301 LSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

Query: 242 RLPIHS-HKRLRLLDISNNNFRGHIPVEIGDV-LPGLFSLNISMNALDGSIPSSFGNMKF 299
              + +    L  LD+S+NNF G I   +       L  L +  N   G IP +  N   
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
           L  L ++ N L+G IP  L      L  L L  N LEG +      +  L+ L L+ N  
Sbjct: 420 LVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 419
            GEIP  LS C  L  + L+NN L+G IP+W+G L  L  + +  N   G IP E     
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 420 WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN-- 477
            L  LD++ N  +G++P+     S +   ++ N + G+       N         + N  
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGK---IAANFIAGKR-YVYIKNDGMKKECHGAGNLL 594

Query: 478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533
              G  S+ ++ LS  +   +      G           +  LD+S N L G IP 
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  295 bits (758), Expect = 6e-91
 Identities = 130/480 (27%), Positives = 211/480 (43%), Gaps = 51/480 (10%)

Query: 71  CSLVHLQELYIYNNDLR---GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEE 127
           C    +  + + +  L     ++   + ++T L  L++S++ + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 128 LHLSNNHF--QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSG 185
           L LS N     +      L + S LK                            L++SS 
Sbjct: 105 LDLSRNSLSGPVTTLTS-LGSCSGLKF---------------------------LNVSSN 136

Query: 186 YGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN--TNLESLFLVNDSLAGPFRL 243
             D           + LE +DLS   ++G      + ++    L+ L +  + ++G   +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V 194

Query: 244 PIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLL 303
            +     L  LD+S+NNF   IP  +GD    L  L+IS N L G    +      L+LL
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 304 DVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM-FSRNFNLTNLKWLQLEGNHFVGE 362
           ++++NQ  G IP        +L+YL+L+ N   G +    +     L  L L GNHF G 
Sbjct: 253 NISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 363 IPQSLSKCFVLEGLFLNNNSLSGMIPR-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW- 420
           +P     C +LE L L++N+ SG +P   L  +  L+ + +  N   G +P     L   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 421 LQILDISDNNISGSLPSCF---HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
           L  LD+S NN SG +          +++ ++L  N   G++   T  N   LV+L LS+N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFN 428

Query: 478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
            L+G+I   +  LS+L  L L  N LEGE+P +L  +  L+ L L  N+L G IP    N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  228 bits (583), Expect = 8e-66
 Identities = 93/328 (28%), Positives = 154/328 (46%), Gaps = 15/328 (4%)

Query: 223 NNTNLESLFLVNDSLAGPFRL---PIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL 279
            +  + S+ L +  L   F      + S   L  L +SN++  G +          L SL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 280 NISMNALDGSIPS--SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG 337
           ++S N+L G + +  S G+   L+ L+V++N L         +   +LE L LS NS+ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 338 HM---FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
                +  +     LK L + GN   G++   +S+C  LE L +++N+ S  IP +LG+ 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNML 454
           + LQH+ +  N L G           L++L+IS N   G +P      S++++ L++N  
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-SLQYLSLAENKF 281

Query: 455 HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCK 513
            G++         +L  LDLS N   G++  +    S L  L L  NN  GE+P+  L K
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 514 LNQLQLLDLSNNNLHGPIPPCFDNTTLH 541
           +  L++LDLS N   G +P    N +  
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSAS 369

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  205 bits (523), Expect = 1e-57
 Identities = 107/445 (24%), Positives = 174/445 (39%), Gaps = 70/445 (15%)

Query: 44  SMPSLKYLSLSDSTL-GTNSSKILDRGLCSLVHLQELYIYNNDLRGSLP--WCMANMTSL 100
            M  LK L LS +   G     +      S   L  L + +N+  G +    C     +L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESL---TNLSA-SLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI 160
           + LY+ +N  TG I  + L + + +  LHLS N+    I    L + S+L+      N +
Sbjct: 397 QELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNML 454

Query: 161 NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL 220
             EI                            P+ L +   LE + L    + GE P+ L
Sbjct: 455 EGEI----------------------------PQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
             N TNL  + L N+ L G     I   + L +L +SNN+F G+IP E+GD    L  L+
Sbjct: 487 S-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLD 544

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN--SLEGH 338
           ++ N  +G+IP++       Q   +  N + G+   ++       +    + N    +G 
Sbjct: 545 LNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIK-NDGMKKECHGAGNLLEFQGI 599

Query: 339 MFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
              +   L+      +    + G    +      +  L ++ N LSG IP+ +G++  L 
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQL 458
            + +  N + G IP E   L  L ILD+S N + G +P                      
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--------------------- 698

Query: 459 KRGTFFNYHSLVTLDLSYNRLNGSI 483
                     L  +DLS N L+G I
Sbjct: 699 ---AMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 18/142 (12%)

Query: 17  HFKSLELLDM--------------ECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNS 62
             +SL  LD+              + +               + +               
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 63  -SKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVH 121
              I    L  L       I +    G       N  S+  L +S N L+G I    +  
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGS 654

Query: 122 LTSIEELHLSNNHF--QIPISL 141
           +  +  L+L +N     IP  +
Sbjct: 655 MPYLFILNLGHNDISGSIPDEV 676

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  223 bits (571), Expect = 9e-65
 Identities = 105/518 (20%), Positives = 191/518 (36%), Gaps = 32/518 (6%)

Query: 45  MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILY 104
             +L  L L  +++     KI +       +L  L + +N L  +       + +L+ L 
Sbjct: 96  CTNLTELHLMSNSI----QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 105 VSSNQLTGSISSS-PLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
           +S+N++    S    +   +S+++L LS+N  +            RL   +  N ++   
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPS 210

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFL-YHQHDLEYVDLSHMKMNGEFPTWLLE 222
           +T+   L   N  +  LSLS+          FL     +L  +DLS+  +N         
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFA 269

Query: 223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPV-EIGDVLPGLFS--- 278
               LE  FL  +++   F   +H    +R L++  +  +  I +  +  +    F    
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 279 ----LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLA---VGCVNLEYLALS 331
               LN+  N + G   + F  +  L+ L ++N+  +     +     +    L  L L+
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 332 NNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGMIPR 389
            N +   + S  F  L +L+ L L  N    E+  Q       +  ++L+ N    +   
Sbjct: 390 KNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 390 WLGNLTRLQHIMMPKNHLEG--PIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEH 446
               +  LQ +M+ +  L+     P  F  L  L ILD+S+NNI+         L  +E 
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 447 VHLSKNMLH-------GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 499
           + L  N L                     L  L+L  N  +    +    L +L  + LG
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 500 HNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
            NNL             L+ L+L  N +       F  
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (548), Expect = 2e-61
 Identities = 113/556 (20%), Positives = 203/556 (36%), Gaps = 71/556 (12%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISES---MPSLKYLSLSDSTLGTNSSKILDRGLC 71
           F  +  L  LD+    I+      ++  E    +P LK L+L  + L    S++ D+   
Sbjct: 45  FTRYSQLTSLDVGFNTIS------KLEPELCQKLPMLKVLNLQHNEL----SQLSDKTFA 94

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
              +L EL++ +N ++           +L  L +S N L+ +   +  V L +++EL LS
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLS 153

Query: 132 NNHFQ-IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGV 190
           NN  Q +      +F +S LK     +N+I                              
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKE---------------------------- 185

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE--NNTNLESLFLVNDSLAGPFRLPIHS- 247
             P   +    L  + L+++++       L     NT++ +L L N  L+          
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 248 -HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
               L +LD+S NN            LP L    +  N +      S   +  ++ L++ 
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 307 NNQLTG--------EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH 358
            +            +I +        LE+L + +N + G   +    L NLK+L L  + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 359 FVGEIPQSLS----KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV- 413
                  + +        L  L L  N +S +       L  L+ + +  N +   +   
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 414 EFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKR-GTFFNYHSLVT 471
           E+  L+ +  + +S N       + F  + S++ + L +  L         F    +L  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 472 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE--------GEVPVQLCKLNQLQLLDLS 523
           LDLS N +     D ++GL +L  L L HNNL         G     L  L+ L +L+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 524 NNNLHGPIPPCFDNTT 539
           +N         F +  
Sbjct: 545 SNGFDEIPVEVFKDLF 560

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (526), Expect = 2e-58
 Identities = 93/511 (18%), Positives = 172/511 (33%), Gaps = 38/511 (7%)

Query: 39  QIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMT 98
           Q+  +   ++  L+L+ + L     ++          L  L +  N +    P     + 
Sbjct: 18  QVPDDLPTNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP 73

Query: 99  SLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNN 158
            L++L +  N+L+     +     T++ ELHL +N  Q   +  P      L      +N
Sbjct: 74  MLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHN 131

Query: 159 EINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF-LYHQHDLEYVDLSHMKMNGEFP 217
            +++              L  L LS+     +   +  ++    L+ ++LS  ++    P
Sbjct: 132 GLSSTK---LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 218 TWLLENNTNLESLFLVNDSLAG---PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD-VL 273
                    L  LFL N  L            ++  +R L +SN+               
Sbjct: 189 GC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333
             L  L++S N L+     SF  +  L+   +  N +       L  G  N+ YL L   
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKR- 305

Query: 334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGN 393
                         +     +           S      LE L + +N + G+       
Sbjct: 306 --------------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 394 LTRLQHIMMPKNHLEGPIPVE----FCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVH 448
           L  L+++ +  +                   L IL+++ N IS      F  L  +E + 
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 449 LSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG--E 506
           L  N +  +L    +    ++  + LSYN+      +    +  L  L+L    L+    
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 507 VPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
            P     L  L +LDLSNNN+        + 
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (483), Expect = 2e-52
 Identities = 102/462 (22%), Positives = 171/462 (37%), Gaps = 31/462 (6%)

Query: 98  TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKN 157
            S  +   S  +LT      P    T+I  L+L++N  +   +      +S+L       
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGF 58

Query: 158 NEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFP 217
           N I+      P L      L  L+L       +   K      +L  + L    +     
Sbjct: 59  NTISKLE---PELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 218 TWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDV-LPGL 276
                   NL +L L ++ L+          + L+ L +SNN  +     E+       L
Sbjct: 115 N-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 277 FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVN--LEYLALSNNS 334
             L +S N +    P  F  +  L  L + N QL   + E L +   N  +  L+LSN+ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 335 LEG---HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWL 391
           L       F      TNL  L L  N+       S +    LE  FL  N++  +    L
Sbjct: 234 LSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 392 GNLTRLQHIMMPKN---------HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL 442
             L  ++++ + ++          L       F  L  L+ L++ DN+I G   + F  L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 443 -SIEHVHLSKNMLHGQ-LKRGTFFN--YHSLVTLDLSYNRLNGSISDWVDGLSQLSHLIL 498
            +++++ LS +    + L   TF +  +  L  L+L+ N+++   SD    L  L  L L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 499 GHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
           G N +  E+  Q    L  +  + LS N         F    
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  165 bits (420), Expect = 6e-44
 Identities = 85/457 (18%), Positives = 153/457 (33%), Gaps = 39/457 (8%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
           F     L  L +   ++  + +    +  +  S++ LSLS+S L T S+           
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF--LGLKWT 248

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
           +L  L +  N+L        A +  L   ++  N +    S S L  L ++  L+L  + 
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSF 307

Query: 135 FQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPK 194
            +  ISL  L                +        L   +  +    +        I   
Sbjct: 308 TKQSISLASL------------PKIDDFSFQWLKCLE--HLNMEDNDIPG------IKSN 347

Query: 195 FLYHQHDLEYVDLSHMKMNGEFP---TWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRL 251
                 +L+Y+ LS+   +       T++   ++ L  L L  + ++            L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT 311
            +LD+  N     +  +    L  +F + +S N       +SF  +  LQ L +    L 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 312 G--EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH--------FVG 361
                P        NL  L LSNN++          L  L+ L L+ N+          G
Sbjct: 468 NVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
                L     L  L L +N    +      +L  L+ I +  N+L       F     L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 422 QILDISDNNISGSLPSCFHPL--SIEHVHLSKNMLHG 456
           + L++  N I+      F P   ++  + +  N    
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 22/237 (9%)

Query: 7   NGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKIL 66
              L GQ +   +++  + +   +        +     +PSL+ L L    L    S   
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKY---LQLTRNSFALVPSLQRLMLRRVALKNVDS--S 472

Query: 67  DRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLT-------GSISSSPL 119
                 L +L  L + NN++       +  +  L IL +  N L               L
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 120 VHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSR 179
             L+ +  L+L +N F   I +E   +   LK+     N +N       S+      L  
Sbjct: 533 KGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLP---ASVFNNQVSLKS 588

Query: 180 LSLSSGYGDGVIFPKFLYHQHDLEYVDLSH------MKMNGEFPTWLLENNTNLESL 230
           L+L       V    F     +L  +D+         +    F  W+ E +TN+  L
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 645

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (548), Expect = 5e-62
 Identities = 103/506 (20%), Positives = 183/506 (36%), Gaps = 27/506 (5%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
           S P L+ L LS   +      I D    SL HL  L +  N ++       + ++SL+ L
Sbjct: 50  SFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
                 L    +   + HL +++EL++++N  Q     E   N + L+     +N+I + 
Sbjct: 106 VAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLEN 223
                        L  LSL              + +  L  + L +   +       ++ 
Sbjct: 165 YCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 224 NTNLESLFLVNDSLAGPFRLPIHSHKRLRLL--------DISNNNFRGHIPVEIGDVLPG 275
              LE   LV         L       L  L         ++  ++     +++ + L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
           + S ++    ++     S+      Q L++ N +        L     +L+ L  ++N  
Sbjct: 284 VSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK----SLKRLTFTSNKG 337

Query: 336 EGHMFSRNFNLTNLKWLQLEGNH--FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGN 393
                    +L +L++L L  N   F G   QS      L+ L L+ N +   +      
Sbjct: 338 GN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG 394

Query: 394 LTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSK 451
           L +L+H+    ++L+       F  L  L  LDIS  +   +    F+ L S+E + ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 452 NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQL 511
           N          F    +L  LDLS  +L        + LS L  L + HNN         
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 512 CKLNQLQLLDLSNNNLHGPIPPCFDN 537
             LN LQ+LD S N++         +
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  208 bits (531), Expect = 1e-59
 Identities = 108/567 (19%), Positives = 197/567 (34%), Gaps = 61/567 (10%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISES---MPSLKYLSLSDSTLGTNSSKILDRGLC 71
           F  F  L++LD+             I   +   +  L  L L+ + +      +      
Sbjct: 48  FFSFPELQVLDLS------RCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFS 97

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
            L  LQ+L     +L     + + ++ +L+ L V+ N +          +LT++E L LS
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 132 NNHFQ--IPISLEPL------------------------FNHSRLKVFWAKNNEINAEIT 165
           +N  Q      L  L                        F   RL     +NN  +  + 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLY-----HQHDLEYVDLSHMKMNGEFPTWL 220
           ++        ++ RL L     +G +               +E   L+++    +    L
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
               TN+ S  LV+ ++        +     + L++ N  F           L  L  L 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPT----LKLKSLKRLT 331

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLA-VGCVNLEYLALSNNSLEGHM 339
            + N   G    S  ++  L+ LD++ N L+ +     +  G  +L+YL LS N +   M
Sbjct: 332 FTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 340 FSRNFNLTNLKWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
            S    L  L+ L  + ++       S       L  L +++             L+ L+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 399 HIMMPKNHLEGPI-PVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHG 456
            + M  N  +    P  F +L  L  LD+S   +    P+ F+ L S++ +++S N    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 457 QLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGL-SQLSHLILGHNNLEGEVPVQ--LCK 513
            L    +   +SL  LD S N +  S    +    S L+ L L  N+       Q  L  
Sbjct: 509 -LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 514 LNQLQLLDLSNNNLHGPIPPCFDNTTL 540
           +   + L +    +    P       +
Sbjct: 568 IKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  194 bits (495), Expect = 1e-54
 Identities = 90/521 (17%), Positives = 174/521 (33%), Gaps = 55/521 (10%)

Query: 33  LNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPW 92
           +  +F +I      S K L LS + L      +      S   LQ L +   +++     
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 93  CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKV 152
              +++ L  L ++ N +      +    L+S+++L     +                  
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLA---------------- 113

Query: 153 FWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKM 212
                +  N  I    +L         L+++         P++  +  +LE++DLS  K+
Sbjct: 114 -----SLENFPIGHLKTLK-------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 213 NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS---HKRLRLLDISNNNFRGHIPVEI 269
              + T L      +  L L  D    P            RL  L + NN    ++    
Sbjct: 162 QSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 270 GDVLPGLFSLNISMNALDGS------IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV--G 321
              L GL    + +              S+   +  L + +     L   + + + +   
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 381
             N+   +L + ++E             + L+L    F       L          L   
Sbjct: 281 LTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFT 333

Query: 382 SLSGMIPRWLGNLTRLQHIMMPKNHL--EGPIPVEFCQLDWLQILDISDNNISGSLPSCF 439
           S  G       +L  L+ + + +N L  +G           L+ LD+S N +     +  
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 499
               +EH+    + L    +   F +  +L+ LD+S+     + +   +GLS L  L + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 500 HNNLEGEV-PVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
            N+ +    P    +L  L  LDLS   L    P  F++ +
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (347), Expect = 1e-34
 Identities = 59/332 (17%), Positives = 110/332 (33%), Gaps = 20/332 (6%)

Query: 233 VNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPS 292
                   +++P +     + LD+S N  R           P L  L++S   +      
Sbjct: 12  YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDG 70

Query: 293 SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352
           ++ ++  L  L +T N +        + G  +L+ L     +L         +L  LK L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 353 QLEGNHFVG-EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP----KNHL 407
            +  N     ++P+  S    LE L L++N +  +    L  L ++  + +      N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 408 EGPIPVEFCQLDWLQILDISDNNISGSLPSCF----HPLSIEHVHLSKNMLHGQLKRGTF 463
               P  F ++  L  L + +N  S ++          L +  + L +    G L++   
Sbjct: 190 NFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 464 FNYHSLVTLDLSYNRLN------GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 517
                L  L +   RL         I D  + L+ +S   L    +E             
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW 306

Query: 518 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 549
           Q L+L N            +       SN   
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (329), Expect = 3e-32
 Identities = 78/434 (17%), Positives = 135/434 (31%), Gaps = 51/434 (11%)

Query: 121 HLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS-PSLTAPNFQLSR 179
            + +I    +  N ++IP +L         K      N +    + S  S      +L  
Sbjct: 6   VVPNITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFP----ELQV 56

Query: 180 LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG 239
           L LS      +           L  + L+   +            ++L+ L  V  +LA 
Sbjct: 57  LDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLAS 114

Query: 240 PFRLPIHSHKRLRLLDISNNNFRG-HIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMK 298
               PI   K L+ L++++N  +   +P    + L  L  L++S N +     +    + 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 299 FLQL----LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQ 353
            + L    LD++ N +    P   A   + L  L L NN    ++       L  L+  +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 354 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE---GP 410
           L    F                   N  +L       L  L  L        +L+     
Sbjct: 232 LVLGEF------------------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLV 470
           I   F  L  +    +    I       ++    +H+ L       +  +       SL 
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNC----KFGQFPTLKLKSLK 328

Query: 471 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL--EGEVPVQLCKLNQLQLLDLSNNNLH 528
            L  + N+   + S+    L  L  L L  N L  +G           L+ LDLS N + 
Sbjct: 329 RLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 529 GPIPPCFDNTTLHE 542
                      L  
Sbjct: 387 TMSSNFLGLEQLEH 400

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  203 bits (518), Expect = 1e-60
 Identities = 79/284 (27%), Positives = 119/284 (41%), Gaps = 32/284 (11%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGS--IPSSFGNMKFLQLLDVTN-NQL 310
            D  N  + G +          + +L++S   L     IPSS  N+ +L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKC 370
            G IP  +A                          LT L +L +   +  G IP  LS+ 
Sbjct: 90  VGPIPPAIA-------------------------KLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL-QILDISDN 429
             L  L  + N+LSG +P  + +L  L  I    N + G IP  +     L   + IS N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 430 NISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG 489
            ++G +P  F  L++  V LS+NML G      F +  +   + L+ N L   +   V  
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGL 242

Query: 490 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533
              L+ L L +N + G +P  L +L  L  L++S NNL G IP 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (446), Expect = 2e-50
 Identities = 64/261 (24%), Positives = 108/261 (41%), Gaps = 11/261 (4%)

Query: 223 NNTNLESLFLVNDSLAGPFRLP--IHSHKRLRLLDISN-NNFRGHIPVEIGDVLPGLFSL 279
               + +L L   +L  P+ +P  + +   L  L I   NN  G IP  I   L  L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYL 106

Query: 280 NISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM 339
            I+   + G+IP     +K L  LD + N L+G +P  ++    NL  +    N + G +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAI 165

Query: 340 FSRNFNLTNL-KWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
                + + L   + +  N   G+IP + +    L  + L+ N L G      G+    Q
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQ 457
            I + KN L   +  +      L  LD+ +N I G+LP     L  +  +++S N L G+
Sbjct: 225 KIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 458 LKRGTFFNYHSLVTLDLSYNR 478
           + +G             + N+
Sbjct: 284 IPQGGNLQ--RFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (446), Expect = 3e-50
 Identities = 65/265 (24%), Positives = 107/265 (40%), Gaps = 33/265 (12%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE--IPEHLAVGCVNLEYLALSNNSL 335
           + +       G +  +      +  LD++   L     IP  LA                
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA---------------- 73

Query: 336 EGHMFSRNFNLTNLKWLQLEG-NHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
                    NL  L +L + G N+ VG IP +++K   L  L++ + ++SG IP +L  +
Sbjct: 74  ---------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS--IEHVHLSKN 452
             L  +    N L G +P     L  L  +    N ISG++P  +   S     + +S+N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLC 512
            L G++   TF N  +L  +DLS N L G  S           + L  N+L  ++  ++ 
Sbjct: 185 RLTGKIPP-TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241

Query: 513 KLNQLQLLDLSNNNLHGPIPPCFDN 537
               L  LDL NN ++G +P     
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (414), Expect = 8e-46
 Identities = 69/277 (24%), Positives = 116/277 (41%), Gaps = 11/277 (3%)

Query: 167 SPSLTAPNFQLSRLSLSSGYGDGVI-FPKFLYHQHDLEYVDLSHMKM-NGEFPTWLLENN 224
                   ++++ L LS          P  L +   L ++ +  +    G  P  +    
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKL 100

Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
           T L  L++ + +++G     +   K L  LD S N   G +P  I   LP L  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGN 159

Query: 285 ALDGSIPSSFGNMKFL-QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN 343
            + G+IP S+G+   L   + ++ N+LTG+IP       +NL ++ LS N LEG      
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLF 217

Query: 344 FNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
            +  N + + L  N    ++   +     L GL L NN + G +P+ L  L  L  + + 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNI--SGSLPSC 438
            N+L G IP     L    +   ++N       LP+C
Sbjct: 277 FNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (328), Expect = 8e-34
 Identities = 67/294 (22%), Positives = 114/294 (38%), Gaps = 42/294 (14%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYN-NDLRGSLPWCMANMTSLRI 102
               +  L LS   L      I    L +L +L  LYI   N+L G +P  +A +T L  
Sbjct: 48  QTYRVNNLDLSGLNL-PKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF--QIPISLEPLFNHSRLKVFWAKNNEI 160
           LY++   ++G+I    L  + ++  L  S N     +P S+    +   L       N I
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSI---SSLPNLVGITFDGNRI 161

Query: 161 NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL 220
           +  I    S        S+L                        + +S  ++ G+ P   
Sbjct: 162 SGAI--PDSY----GSFSKL---------------------FTSMTISRNRLTGKIPPTF 194

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
              N NL  + L  + L G   +   S K  + + ++ N+    +  ++G     L  L+
Sbjct: 195 --ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLD 250

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS 334
           +  N + G++P     +KFL  L+V+ N L GEIP+         +  A +NN 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (304), Expect = 1e-30
 Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 28/188 (14%)

Query: 357 NHFVGEIPQSLSKCFVLEGLFLNNNSLSG--MIPRWLGNLTRLQHIMMPK-NHLEGPIPV 413
             ++G +  + ++ + +  L L+  +L     IP  L NL  L  + +   N+L GPIP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 414 EFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD 473
              +L  L  L I+  N+SG++P                    Q+K        +LVTLD
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFL----------------SQIK--------TLVTLD 131

Query: 474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL-QLLDLSNNNLHGPIP 532
            SYN L+G++   +  L  L  +    N + G +P      ++L   + +S N L G IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 533 PCFDNTTL 540
           P F N  L
Sbjct: 192 PTFANLNL 199

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (271), Expect = 4e-26
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 31/183 (16%)

Query: 362 EIPQSLSKCFVL----EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG--PIPVEF 415
           +I + L     L          N +  G++        R+ ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 416 CQLDWLQILDISD-NNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474
             L +L  L I   NN+ G +P                    +L +        L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAI----------------AKLTQ--------LHYLYI 108

Query: 475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC 534
           ++  ++G+I D++  +  L  L   +N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 535 FDN 537
           + +
Sbjct: 169 YGS 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  208 bits (531), Expect = 1e-59
 Identities = 105/529 (19%), Positives = 181/529 (34%), Gaps = 34/529 (6%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISES---MPSLKYLSLSDSTLGTNSSKILDRGLC 71
           F    +L  LD+             I  ++      L  L L+ + L      + +  L 
Sbjct: 53  FSRLINLTFLDLT------RCQIYWIHEDTFQSQHRLDTLVLTANPL----IFMAETALS 102

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
               L+ L+     +       + N  +L  LY+ SN ++ SI          ++ L   
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQ 161

Query: 132 NNHFQ--IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
           NN         +  L   + L +    N+     I         +     L+        
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGND-----IAGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 190 VIFPKFLYHQ-HDLEYVDLSHMKMNGEFPTWLLEN-NTNLESLFLVNDSLAGPFRLPIHS 247
           VIF          L       M      P         ++ES+ L             H 
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
              L+ LD++  +    +P  +   L  L  L +S N  +     S  N   L  L +  
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN--FNLTNLKWLQLEGNHFVGEIPQ 365
           N    E+         NL  L LS++ +E          NL++L+ L L  N  +    +
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 366 SLSKCFVLEGLFLNNNSLSGMIPR-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL 424
           +  +C  LE L L    L     +    NL  L+ + +  + L+      F  L  LQ L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 425 DISDNNISGSLPSCFHPL----SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
           ++  N+         + L     +E + LS   L   + +  F +   +  +DLS+NRL 
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLT 513

Query: 481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529
            S  + +  L  + +L L  N++   +P  L  L+Q + ++L  N L  
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  183 bits (467), Expect = 1e-50
 Identities = 107/530 (20%), Positives = 181/530 (34%), Gaps = 69/530 (13%)

Query: 18  FKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQ 77
             S E L+     +    +        + +L +L L+   +      I +    S   L 
Sbjct: 32  PNSTECLEFSFNVL---PTIQNTTFSRLINLTFLDLTRCQI----YWIHEDTFQSQHRLD 84

Query: 78  ELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQI 137
            L +  N L       ++   +L+ L+     ++ SI   PL +  ++E L+L +NH   
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS 143

Query: 138 PISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLY 197
            I L   F   +LKV   +NN I+     S    +   Q + LSL+    D        +
Sbjct: 144 -IKLPKGFPTEKLKVLDFQNNAIH---YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDIS 257
                + ++    +        L  +                           L L    
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-----------------------SLWLGTFE 236

Query: 258 NNNFRGHIPVEI-GDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE 316
           + +     P    G     + S+N+  +       ++F     LQ LD+T   L+ E+P 
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295

Query: 317 HLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGL 376
            L                           L+ LK L L  N F      S S    L  L
Sbjct: 296 GL-------------------------VGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 377 FLNNNSLSGMI-PRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILDISDNNISG 433
            +  N+    +    L NL  L+ + +  + +E      ++   L  LQ L++S N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 434 SLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ 492
                F     +E + L+   L  +  +  F N H L  L+LS++ L+ S     DGL  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 493 LSHLILGHNNLEGEVPVQ---LCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
           L HL L  N+       +   L  L +L++L LS  +L       F +  
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (429), Expect = 1e-45
 Identities = 94/545 (17%), Positives = 178/545 (32%), Gaps = 50/545 (9%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
           F     L+ L +    +       +       +LK+L    + +    S I    L +  
Sbjct: 77  FQSQHRLDTLVLTANPL---IFMAETALSGPKALKHLFFIQTGI----SSIDFIPLHNQK 129

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
            L+ LY+ +N +             L++L   +N +   +S   +  L     L L+ N 
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNG 188

Query: 135 FQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTA---------------------- 172
             I       F+ +  +       +    I +    +                       
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 173 ---PNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLES 229
                  +  ++L   Y   +      +    L+ +DL+   ++ E P+ L    + L+ 
Sbjct: 249 EGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKK 305

Query: 230 LFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGS 289
           L L  +      ++   +   L  L I  N  R  +     + L  L  L++S + ++ S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 290 --IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NL 346
                   N+  LQ L+++ N+      E     C  LE L L+   L+       F NL
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMI---PRWLGNLTRLQHIMMP 403
             LK L L  +       Q       L+ L L  N            L  L RL+ +++ 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463
              L       F  L  +  +D+S N ++ S       L   +++L+ N +   +     
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLL 543

Query: 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK-LNQLQLLDL 522
                  T++L  N L+ + S               +     +    LC+    L+ + L
Sbjct: 544 PILSQQRTINLRQNPLDCTCS-----NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRL 598

Query: 523 SNNNL 527
           S+  L
Sbjct: 599 SDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (398), Expect = 3e-41
 Identities = 83/448 (18%), Positives = 148/448 (33%), Gaps = 22/448 (4%)

Query: 101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI 160
           +     +  L       P     S E L  S N     I          L        +I
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 161 NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL 220
                          +L  L L++     +     L     L+++      ++       
Sbjct: 70  YWIH---EDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFI-P 124

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGL--FS 278
           L N   LESL+L ++ ++          ++L++LD  NN    ++  E    L      S
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLS 183

Query: 279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLA-VGCVNLEYLALSNNSLEG 337
           LN++ N +   I     +    Q L+    Q    I + L      +L      +   E 
Sbjct: 184 LNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 338 --HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395
                       +++ + L+ ++F      +      L+ L L    LS  +P  L  L+
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLS 301

Query: 396 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHPL-SIEHVHLSKNM 453
            L+ +++  N  E    +       L  L I  N     L + C   L ++  + LS + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 454 LHG-QLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPVQL 511
           +           N   L +L+LSYN      ++      QL  L L    L+  +     
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 512 CKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
             L+ L++L+LS++ L       FD   
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLP 449

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  195 bits (498), Expect = 4e-55
 Identities = 96/532 (18%), Positives = 185/532 (34%), Gaps = 43/532 (8%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISES---MPSLKYLSLSDSTLGTNSSKILDRGLC 71
           F +F  L+ LD+    I        I  ++   +  L  L L+ + +             
Sbjct: 52  FSNFSELQWLDLSRCEIE------TIEDKAWHGLHHLSNLILTGNPI----QSFSPGSFS 101

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
            L  L+ L      L     + +  + +L+ L V+ N +      +   +LT++  + LS
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 132 NNHFQ--IPISLEPLFN-HSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            N+ Q      L+ L              N I               +L  L+L   +  
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPI----DFIQDQAFQGIKLHELTLRGNFNS 217

Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNT-------NLESLFLVNDSLAGPF 241
             I    L +   L    L   +   E    + E +         ++   L   +     
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
            +  H    +  + ++  + +    +E         SL+I    L         ++ FL+
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLK 331

Query: 302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLE--GHMFSRNFNLTNLKWLQLEGNHF 359
            L +T N+ +    +   V   +L YL LS N+L   G     +    +L+ L L  N  
Sbjct: 332 SLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW-LGNLTRLQHIMMPKNHLEGPIPVEFCQL 418
           +  +  +      L+ L   +++L  +       +L +L ++ +   + +      F  L
Sbjct: 389 I-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 419 DWLQILDISDNNISGSLPSCF--HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY 476
             L  L ++ N+   +  S    +  ++  + LSK  L   +  G F   H L  L++S+
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSH 506

Query: 477 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
           N L    S   + L  LS L    N +E    +       L   +L+NN++ 
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (321), Expect = 3e-31
 Identities = 52/300 (17%), Positives = 103/300 (34%), Gaps = 24/300 (8%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
               +      +P +I        ++++S N L      SF N   LQ LD++  ++   
Sbjct: 16  YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 314 IPEHLAVGCVNLEYLALSNNSLEG---HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKC 370
             +    G  +L  L L+ N ++      FS    LT+L+ L              + + 
Sbjct: 72  EDKAWH-GLHHLSNLILTGNPIQSFSPGSFS---GLTSLENLVAVETKLASLESFPIGQL 127

Query: 371 FVLEGLFLNNNSLSGM-IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL----DWLQILD 425
             L+ L + +N +    +P +  NLT L H+ +  N+++     +   L         LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS- 484
           +S N I       F  + +  + L  N     + +    N   L    L         + 
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 485 -----DWVDGLSQLS--HLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
                  ++GL  ++     L + N   +  V+   L  +  + L+  ++          
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (307), Expect = 2e-29
 Identities = 52/360 (14%), Positives = 106/360 (29%), Gaps = 14/360 (3%)

Query: 1   MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGT 60
           +     +  +      +   L +  +         +        M  L  +++ +  L  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 61  NSSKILDRG-LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPL 119
            +    D      L ++  + +    +       +      + L +   QL       P 
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK----QFPT 324

Query: 120 VHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSR 179
           + L  ++ L L+ N   I            L       N ++               L  
Sbjct: 325 LDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRH 380

Query: 180 LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG 239
           L LS  +   +I         +L+++D  H  +          +   L  L +   +   
Sbjct: 381 LDLS--FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 240 PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF 299
            F         L  L ++ N+F+ +    +      L  L++S   L+      F  +  
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
           LQLL++++N L      H      +L  L  S N +E           +L +  L  N  
Sbjct: 499 LQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (294), Expect = 9e-28
 Identities = 68/356 (19%), Positives = 118/356 (33%), Gaps = 25/356 (7%)

Query: 202 LEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNF 261
           L+++DLS  ++             +L +L L  + +             L  L       
Sbjct: 58  LQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 262 RGHIPVEIGDVLPGLFSLNISMNALDG-SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV 320
                  IG  L  L  LN++ N +    +P+ F N+  L  +D++ N +       L  
Sbjct: 117 ASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 321 GC---VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP-------QSLSKC 370
                     L +S N ++  +  + F    L  L L GN     I          L   
Sbjct: 176 LRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQ--HIMMPKNHLEGPIPVEFCQLDWLQILDISD 428
            ++ G F +  +L    P  +  L  +      +   +      V+F  L  +  + ++ 
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 429 NNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD 488
            +I   L         + + + +     QLK+    +   L +L L+ N+ + S      
Sbjct: 295 VSIK-YLEDVPKHFKWQSLSIIRC----QLKQFPTLDLPFLKSLTLTMNKGSISFKKV-- 347

Query: 489 GLSQLSHLILGHNNLE--GEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542
            L  LS+L L  N L   G         N L+ LDLS N              L  
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 7e-12
 Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 23/219 (10%)

Query: 20  SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQEL 79
           SL  LD+      + ++        +  L++L    STL   +         SL  L  L
Sbjct: 377 SLRHLDLSFNGAIIMSANFM----GLEELQHLDFQHSTLKRVTEFSA---FLSLEKLLYL 429

Query: 80  YIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPI 139
            I   + +         +TSL  L ++ N    +  S+   + T++  L LS    +  I
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-I 488

Query: 140 SLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQ 199
           S        RL++    +N +        S     + LS L  S             +  
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLL---FLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFP 544

Query: 200 HDLEYVDLSHMKMN--------GEFPTWLLENNTNLESL 230
             L + +L++   N         +F  W+ E    L ++
Sbjct: 545 KSLAFFNLTN---NSVACICEHQKFLQWVKEQKQFLVNV 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  198 bits (504), Expect = 1e-54
 Identities = 85/501 (16%), Positives = 163/501 (32%), Gaps = 48/501 (9%)

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           L +   +  L +     +G +P  +  +T L++L   ++  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEINA--EITQSPSLTAPNFQLSRLSLSSGYG 187
              +  ++      L    RL +     + IN   E+      +  + + +++   +   
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 188 DGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS 247
             +   K +     L+ +  ++     +          + E              L   +
Sbjct: 438 TFI--SKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSN 489

Query: 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDG---------SIPSSFGNMK 298
            K L  +++ N      +P  + D LP L SLNI+ N              +        
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH 358
            +Q+  +  N L            V L  L   +N +             L  L+L+ N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQ 606

Query: 359 FVGEIPQSLSKCF-VLEGLFLNNNSLSGMIPRW--LGNLTRLQHIMMPKNHLEGPIPVEF 415
              EIP+        +EGL  ++N L   IP      ++  +  +    N +        
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 416 CQLDW-----LQILDISDNNISGSLPSCFHPL-SIEHVHLSKNML------HGQLKRGTF 463
           C +D         + +S N I       F     I  + LS N++        + K G +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 464 FNYHSLVTLDLSYNRLNG-SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL 522
            N + L T+DL +N+L   S       L  LS++ + +N      P Q    +QL+   +
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGI 783

Query: 523 ------SNNNLHGPIPPCFDN 537
                   N +    P     
Sbjct: 784 RHQRDAEGNRILRQWPTGITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (423), Expect = 7e-44
 Identities = 79/533 (14%), Positives = 145/533 (27%), Gaps = 87/533 (16%)

Query: 19  KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQE 78
           + L L D+    I  N     I  +S  SLK   + + T   N    + + +  L  LQ 
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT---NRITFISKAIQRLTKLQI 452

Query: 79  LYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF--Q 136
           +Y  N+                        +   +   S   +L  + ++ L N     Q
Sbjct: 453 IYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQ 506

Query: 137 IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFL 196
           +P  L  L     L+      N                      S +    D        
Sbjct: 507 LPDFLYDL---PELQSLNIACNRGI-------------------SAAQLKADWTRLADDE 544

Query: 197 YHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDI 256
                ++   + +  +     +  L+    L  L                        D 
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL------------------------DC 580

Query: 257 SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE 316
            +N  R H+    G     L  L +  N ++            ++ L  ++N+L   IP 
Sbjct: 581 VHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636

Query: 317 HLAVG-CVNLEYLALSNNSLEGH-----MFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKC 370
                    +  +  S N +            ++   N   + L  N       +  +  
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 371 FVLEGLFLNNNSLS-------GMIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDWLQ 422
             +  + L+NN ++               N   L  I +  N L           L +L 
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 423 ILDISDNNISGSLPSCFHPLS-------IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS 475
            +D+S N  S S P+     S               N +  Q          SL+ L + 
Sbjct: 757 NMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIG 814

Query: 476 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            N +   + + +    QL  L +  N         +C   +  +  L  +   
Sbjct: 815 SNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (420), Expect = 2e-43
 Identities = 64/497 (12%), Positives = 135/497 (27%), Gaps = 61/497 (12%)

Query: 112 GSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLT 171
           G      L +   +  L L+    +  +    +   + LKV     +             
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSE---TVSGRLFG 367

Query: 172 APNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLF 231
                                  FL +   L   DL    +N       ++ ++ +    
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 232 LVNDSLAGPF-RLP--IHSHKRLRLLDISNNNFRG-------------------HIPVEI 269
               +L      +   I    +L+++  +N+ F                     +  +  
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 270 GDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV--------G 321
            + L  L  + +        +P    ++  LQ L++  N+                    
Sbjct: 488 SN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 322 CVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 380
              ++   +  N+LE    S +   +  L  L    N       ++      L  L L+ 
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY 604

Query: 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDWLQILDISDNNISGSLPSCF 439
           N +  +   +     +++ +    N L+  P       +  +  +D S N I     +  
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 440 HPL------SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL-------NGSISDW 486
             +      +   V LS N +        F     + T+ LS N +              
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 487 VDGLSQLSHLILGHNNLEGEVP--VQLCKLNQLQLLDLSNNNLHGPIPPCFDN----TTL 540
                 L+ + L  N L   +    +   L  L  +D+S N      P    N       
Sbjct: 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 541 HESYSNSSSPNKQFEIF 557
              +   +  N+    +
Sbjct: 782 GIRHQRDAEGNRILRQW 798

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (268), Expect = 2e-24
 Identities = 34/279 (12%), Positives = 80/279 (28%), Gaps = 39/279 (13%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG 337
           + N  ++           N   +  L +      G +P+ +      L+ L+   +S   
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETV 361

Query: 338 -------HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW 390
                     + + +      +++       +  Q L+   +L+     N  +  +    
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 391 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
             +L   Q   +  N +   I     +L  LQI+  +++  +    +             
Sbjct: 422 RISLKDTQIGNL-TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVD----------- 468

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510
                                 +  Y +   +       L  L+ + L +     ++P  
Sbjct: 469 ------------------WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 511 LCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 549
           L  L +LQ L+++ N          D T L +       
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (251), Expect = 3e-22
 Identities = 50/356 (14%), Positives = 100/356 (28%), Gaps = 77/356 (21%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
            M  L  L         N  + L+    + V L +L +  N +        A    +  L
Sbjct: 571 KMVKLGLLDCVH-----NKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
             S N+L    +      +  +  +  S N                              
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG----------------------SEGRN 662

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLEN 223
           I+ S      +++                            V LS+ ++   FPT L   
Sbjct: 663 ISCSM----DDYKGIN----------------------ASTVTLSYNEIQK-FPTELFAT 695

Query: 224 NTNLESLFL-------VNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIG-DVLPG 275
            + + ++ L       + ++   P      +   L  +D+  N     +  +     LP 
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

Query: 276 LFSLNISMNALDGSIPSSFGNMKFLQLL------DVTNNQLTGEIPEHLAVGCVNLEYLA 329
           L ++++S N    S P+   N   L+        D   N++  + P  +   C +L  L 
Sbjct: 755 LSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQ 812

Query: 330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHF-VGEIPQSLSKC-FVLEGLFLNNNSL 383
           + +N +             L  L +  N     ++          +  L  +    
Sbjct: 813 IGSNDIRK--VDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (488), Expect = 2e-53
 Identities = 64/485 (13%), Positives = 140/485 (28%), Gaps = 67/485 (13%)

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
           S   +  L +      G +P  +  +T L +L + S+    +        +++       
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 132 NNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVI 191
                                     +     +   P     +  L +  ++S      I
Sbjct: 139 QKMR---------------------MHYQKTFVDYDPREDFSD--LIKDCINSDPQQKSI 175

Query: 192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRL 251
             K          +      +       ++   T L   ++ N                 
Sbjct: 176 -KKSSRITLKDTQIGQLSNNI-TFVSKAVM-RLTKLRQFYMGNSPFVAENICEA-----W 227

Query: 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT 311
              +           ++  + L  L  + +        +P+    +  +QL++V  N+  
Sbjct: 228 ENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 312 GEIPEHLAVG-------CVNLEYLALSNNSL-EGHMFSRNFNLTNLKWLQLEGNHFVGEI 363
                               ++ + +  N+L    + +    +  L  L+   N   G++
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDWLQ 422
           P +      L  L L  N ++ +   + G   +++++    N L+  P   +   +  + 
Sbjct: 347 P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 423 ILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482
            +D S N I       F PL                     F   ++ +++LS N+++  
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPT-----------------PFKGINVSSINLSNNQISKF 448

Query: 483 ISDWVDGLSQLSHLILGHNNLEG-------EVPVQLCKLNQLQLLDLSNNNLHGPIPPCF 535
             +     S LS + L  N L         +          L  +DL  N L   +   F
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF 507

Query: 536 DNTTL 540
             TTL
Sbjct: 508 RATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  189 bits (481), Expect = 2e-52
 Identities = 78/540 (14%), Positives = 168/540 (31%), Gaps = 81/540 (15%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG----SLPWCMANMTS 99
           S   +  LSL         S  +   +  L  L+ L + ++  +       P  ++   S
Sbjct: 79  SNGRVTGLSLEGFGA----SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 100 LRILYVSSNQLTGSI-SSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNN 158
                        +     P    + + +  ++++  Q  I           ++    NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 159 --EINAEITQSPSLT-----------APNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYV 205
              ++  + +   L                +      S              +  DL  V
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 206 DLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP--------IHSHKRLRLLDIS 257
           ++ +     + PT+L +    ++ + +  +      +L             ++++++ I 
Sbjct: 255 EVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 258 NNNFR-GHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE 316
            NN +   +   +   +  L  L    N L+G +P+ FG+   L  L++  NQ+T  IP 
Sbjct: 314 YNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPA 370

Query: 317 HLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVG-------EIPQSLS 368
           +       +E L+ ++N L+      +  +++ +  +    N            +  +  
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 369 KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG-------PIPVEFCQLDWL 421
           K   +  + L+NN +S          + L  I +  N L              F     L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG 481
             +D+  N ++                LS +     L          LV +DLSYN  + 
Sbjct: 491 TSIDLRFNKLTK---------------LSDDFRATTLP--------YLVGIDLSYNSFSK 527

Query: 482 SISDWVDGLSQLSHLILGH------NNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF 535
                    S L    + +      N    E P  +     L  L + +N++   +    
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  186 bits (473), Expect = 2e-51
 Identities = 77/544 (14%), Positives = 170/544 (31%), Gaps = 56/544 (10%)

Query: 17  HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDR-GLCSLVH 75
               LE+L +      +N        + + +                  +D         
Sbjct: 103 QLTELEVLALGSHGEKVN--ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 76  LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
           L +  I ++  + S+            +   SN +T  +S + ++ LT + + ++ N+ F
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA-VMRLTKLRQFYMGNSPF 218

Query: 136 QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF 195
                 E  + +   +    +    + +      LT  + ++      +        P F
Sbjct: 219 VAENICE-AWENENSEYAQ-QYKTEDLKWDNLKDLT--DVEVYNCPNLT------KLPTF 268

Query: 196 LYHQHDLEYVDLSH--------MKMNGEFPTWLLENNTNLESLFLVNDSLA-GPFRLPIH 246
           L    +++ ++++         +K + +           ++ +++  ++L   P    + 
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADA-PVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             K+L +L+   N   G +P   G     L SLN++ N +     +  G  + ++ L   
Sbjct: 328 KMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 307 NNQLTGEIPEHLAVG-CVNLEYLALSNNSLEG-------HMFSRNFNLTNLKWLQLEGNH 358
           +N+L   IP          +  +  S N +          +    F   N+  + L  N 
Sbjct: 386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 359 FVGEIPQSLSKCFVLEGLFLNNNSLSGM-------IPRWLGNLTRLQHIMMPKNHLEG-P 410
                 +  S    L  + L  N L+ +             N   L  I +  N L    
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-------IEHVHLSKNMLHGQLKRGTF 463
                  L +L  +D+S N+ S   P+     S               N    +      
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GI 562

Query: 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 523
               SL  L +  N +   +++ +     +S L +  N         +C   +  +  L 
Sbjct: 563 TLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 524 NNNL 527
            +  
Sbjct: 620 YDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  157 bits (398), Expect = 4e-41
 Identities = 36/309 (11%), Positives = 96/309 (31%), Gaps = 22/309 (7%)

Query: 245 IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDG----SIPSSFGNMKFL 300
           ++S+ R+  L +      G +P  IG  L  L  L +  +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 301 QLLDVTNNQLTGEIPEHLA-VGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
           +              ++       +L    ++++  +  +   +        +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 419
              + +++ +   L   ++ N+                ++             +++  L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 420 WLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKR-------GTFFNYHSLVT 471
            L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 472 LDLSYNRL-NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP 530
           + + YN L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 531 IPPCFDNTT 539
                  T 
Sbjct: 369 PANFCGFTE 377

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  132 bits (335), Expect = 7e-33
 Identities = 58/381 (15%), Positives = 129/381 (33%), Gaps = 42/381 (11%)

Query: 33  LNTSFLQIISES---MPSLKYLSLSDSTLGTNSSKILDRG----LCSLVHLQELYIYNND 85
            N   L  +      +P ++ ++++ +   +      D            +Q +YI  N+
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 86  LR-GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ-IPISLEP 143
           L+   +   +  M  L +L    NQL G + +        +  L+L+ N    IP +   
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANF-- 372

Query: 144 LFNHSRLKVFWAKNNEI-----NAEITQSPSLTAPNFQLSRLSLSSGYGDGVI-FPKFLY 197
                +++     +N++       +      ++A     S   + S  G          +
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA--IDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL-------VNDSLAGPFRLPIHSHKR 250
              ++  ++LS+ +++  FP  L    + L S+ L       +  +          +   
Sbjct: 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 251 LRLLDISNNNFRGHIPVEIGDV-LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN-- 307
           L  +D+  N     +  +     LP L  +++S N+     P+   N   L+   + N  
Sbjct: 490 LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547

Query: 308 ----NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI 363
               N+   E PE +   C +L  L + +N +     +      N+  L ++ N  +   
Sbjct: 548 DAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIRK--VNEKI-TPNISVLDIKDNPNISID 603

Query: 364 PQSLSKCFVLEGLFLNNNSLS 384
              +          L  +   
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (294), Expect = 1e-27
 Identities = 32/285 (11%), Positives = 81/285 (28%), Gaps = 37/285 (12%)

Query: 270 GDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA 329
           G      ++ N  ++        S  +   +  L +     +G +P+ +      LE LA
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLA 111

Query: 330 LSNNSLEGHMFSRNF----NLTNLKWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSL 383
           L ++  + +             + +  Q    H+         +     L    +N++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 384 SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 443
              I +      +   I    N++   +     +L  L+   + ++              
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN- 229

Query: 444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
                                        +  Y +   +     D L  L+ + + +   
Sbjct: 230 ----------------------------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 548
             ++P  L  L ++QL++++ N          D   L ++     
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 7/171 (4%)

Query: 390 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHP-----LSI 444
            L +  R+  + +      G +P    QL  L++L +  +    +            +S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 445 EHVHLSKNMLHG-QLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
           E     +       +      ++  L+   ++ +    SI        + + +    NN+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQF 554
              V   + +L +L+   + N+                E      + + ++
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  168 bits (426), Expect = 3e-44
 Identities = 107/568 (18%), Positives = 197/568 (34%), Gaps = 64/568 (11%)

Query: 15  FPHFKSLELLDMECTRIA--LNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS 72
                + E L +    I     +SF       +  L+ L L           I      +
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSF-----PFLEQLQLLELGSQYT---PLTIDKEAFRN 71

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLT-GSISSSPLVHLTSIEELHLS 131
           L +L+ L + ++ +    P     +  L  L +    L+   +      +L ++  L LS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 132 NNHFQIPISLEPLFNH-SRLKVFWAKNNEINAEITQS-PSLTAPNFQLSRLSLSSGYGDG 189
            N  +  + L P F   + LK     +N+I          L      LS  SL++     
Sbjct: 132 KNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT--LSFFSLAANSLYS 188

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK 249
            +   +    +    + L  +         +  N   ++     +++++      +    
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 250 RLRLLDISNNNFRGHIPVEI--GDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
            +       +N +         G     +  L++S   +       F  +K L++L++  
Sbjct: 241 HIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQS 366
           N++  +I +    G  NL+ L LS N L   ++S NF  L  + ++ L+ NH      Q+
Sbjct: 300 NKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG----------------- 409
                 L+ L L +N+L+      +  +  +  I +  N L                   
Sbjct: 358 FKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412

Query: 410 ----PIPVEFCQLDWLQILDISDNNISGSLPSCF--HPLSIEHVHLSKNMLHG----QLK 459
                I     ++  LQIL ++ N  S            S+E + L +NML      +L 
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 460 RGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 519
              F     L  L L++N LN         L+ L  L L  N L       L     L++
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEI 530

Query: 520 LDLSNNNLHGPIPPCFDNTTLHESYSNS 547
           LD+S N L  P P  F + ++ +   N 
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  104 bits (262), Expect = 1e-23
 Identities = 85/484 (17%), Positives = 171/484 (35%), Gaps = 60/484 (12%)

Query: 15  FPHFKSLELLDMECTRI-ALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           F    SL+ +D    +I  +    L+ +     +L + SL+ ++L +  S    + +   
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 74  --VHLQELYIYNNDLRGSLPWCMAN------------MTSLRILYVSSNQLTGSISSSPL 119
             + L+ L +  N     +    +N               +       + +      +  
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTF 260

Query: 120 VHL--TSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL 177
             L  +S+  L LS+      ++         LKV     N+IN     +         L
Sbjct: 261 AGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKIN---KIADEAFYGLDNL 316

Query: 178 SRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL 237
             L+LS       ++    Y    + Y+DL    +         +    L++L L +++L
Sbjct: 317 QVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL 374

Query: 238 AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDG-SIPSSFGN 296
                  IH    +  + +S N         +  +      +++S N L+   I      
Sbjct: 375 TT-----IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 297 MKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEG 356
           +  LQ+L +  N+ +    +       +LE L L  N L+                    
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL----------------AWE 468

Query: 357 NHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 416
                ++ + LS    L+ L+LN+N L+ + P    +LT L+ + +  N L      +  
Sbjct: 469 TELCWDVFEGLSH---LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

Query: 417 QLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY 476
               L+ILDIS N +    P  F  LS+  + ++ N    + +  TF N+ +   + ++ 
Sbjct: 526 AN--LEILDISRNQLLAPNPDVFVSLSV--LDITHNKFICECELSTFINWLNHTNVTIAG 581

Query: 477 NRLN 480
              +
Sbjct: 582 PPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 48/226 (21%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMI-PRWLGNLTRLQHIMMP 403
            L   + L L  N+       S      L+ L L +      I      NL  L+ + + 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSL--PSCFHPL-SIEHVHLSKNMLHGQLKR 460
            + +    P  F  L  L  L +    +S ++     F  L ++  + LSKN +      
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 461 GTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ--LSHLILGHNNLEGEVPVQLCKLNQ-- 516
            +F   +SL ++D S N++       ++ L    LS   L  N+L   V V   K     
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 517 ----LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFF 558
               L++LD+S N     I   F N        +    +      F
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (408), Expect = 7e-43
 Identities = 98/523 (18%), Positives = 188/523 (35%), Gaps = 48/523 (9%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGL 70
           F  F  L++LD       L+   +Q I +    S+  L  L L+ + +      +     
Sbjct: 48  FFSFPELQVLD-------LSRCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAF 96

Query: 71  CSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHL 130
             L  LQ+L     +L     + + ++ +L+ L V+ N +          +LT++E L L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 131 SNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGV 190
           S+N  Q  I    L    ++ +     +     +           +L +L+L + +    
Sbjct: 157 SSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKR 250
           +    +     LE   L   +           N  NLE              L    +  
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGE---------FRNEGNLEKFD--------KSALEGLCNLT 258

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSF-GNMKFLQLLDVTNNQ 309
           +    ++  ++     +++ + L  + S ++    ++     S+    + L+L++    Q
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN--HFVGEIPQSL 367
                     +   +L+ L  ++N           +L +L++L L  N   F G   QS 
Sbjct: 319 FP-------TLKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 368 SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDWLQILDI 426
                L+ L L+ N +   +      L +L+H+    ++L+       F  L  L  LDI
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 427 SDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD 485
           S  +   +    F+ L S+E + ++ N          F    +L  LDLS  +L      
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 486 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
             + LS L  L +  N L+        +L  LQ + L  N   
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (369), Expect = 1e-37
 Identities = 97/521 (18%), Positives = 186/521 (35%), Gaps = 61/521 (11%)

Query: 36  SFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMA 95
           +F +I      S K L LS + L      +      S   LQ L +   +++        
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 96  NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWA 155
           +++ L  L ++ N +  S++      L+S+++L     +    +   P+ +   LK    
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNV 131

Query: 156 KNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGE 215
            +N I +                              P++  +  +LE++DLS  K+   
Sbjct: 132 AHNLIQS---------------------------FKLPEYFSNLTNLEHLDLSSNKIQ-S 163

Query: 216 FPTWLLENNTNLESLFLVNDSLAGPFRLPIH----SHKRLRLLDISNNNFRGHIPVEIGD 271
                L     +  L L  D L+      I        RL  L + NN    ++      
Sbjct: 164 IYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 272 VLPGLFSLNISMNALDGSI------PSSFGNMKFLQLLDVTNNQLTGEIPEHLAV--GCV 323
            L GL    + +              S+   +  L + +     L   + + + +     
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 324 NLEYLALSNNSLEG-HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 382
           N+   +L + ++E    FS NF   +L+ +  +   F     +SL +      L   +N 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR------LTFTSNK 336

Query: 383 LSGMIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFH 440
                     +L  L+ + + +N L   G           L+ LD+S N +  ++ S F 
Sbjct: 337 GGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 441 PL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 499
            L  +EH+    + L    +   F +  +L+ LD+S+     + +   +GLS L  L + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 500 HNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
            N+ +         +L  L  LDLS   L    P  F++ +
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (302), Expect = 6e-29
 Identities = 84/456 (18%), Positives = 159/456 (34%), Gaps = 48/456 (10%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
           F    SL+ L    T +    S        + +LK L+++ + +    S  L     +L 
Sbjct: 96  FSGLSSLQKLVAVETNL---ASLENFPIGHLKTLKELNVAHNLI---QSFKLPEYFSNLT 149

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRI----LYVSSNQLTGSISSSPLVHLTSIEELHL 130
           +L+ L + +N ++      +  +  + +    L +S N +   I       +  + +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTL 207

Query: 131 SNNHFQIPISLEPLFNHSRLKVFWAKNNEIN-----AEITQSPSLTAPNFQLSRLSLSSG 185
            NN   + +    +   + L+V      E        +  +S      N  +    L+  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 186 YGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPI 245
                          ++    L  + +           N   + L LVN        L +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 246 HSHKRLRL-------------------LDISNNNFRG-HIPVEIGDVLPGLFSLNISMNA 285
            S KRL                     LD+S N         +       L  L++S N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 286 LDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG---HMFSR 342
           +  ++ S+F  ++ L+ LD  ++ L       + +   NL YL +S+         +F+ 
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN- 442

Query: 343 NFNLTNLKWLQLEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM 401
              L++L+ L++ GN F         ++   L  L L+   L  + P    +L+ LQ + 
Sbjct: 443 --GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 437
           M  N L+      F +L  LQ + +  N    S P 
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 2e-22
 Identities = 55/306 (17%), Positives = 103/306 (33%), Gaps = 19/306 (6%)

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
            + LD+S N  R H+        P L  L++S   +      ++ ++  L  L +T N +
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF-VGEIPQSLSK 369
              +      G  +L+ L     +L         +L  LK L +  N     ++P+  S 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 370 CFVLEGLFLNNNSLSGMIPRWLGNLTRLQ----HIMMPKNHLEGPIPVEFCQLDWLQILD 425
              LE L L++N +  +    L  L ++      + +  N +   I     +   L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 426 ISDNNISGSLPSCF----HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG 481
           + +N  S ++          L +  + L +    G L++        L  L +   RL  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 482 ------SISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIPPC 534
                  I D  + L+ +S   L    +E             L+L++             
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 535 FDNTTL 540
               T 
Sbjct: 327 LKRLTF 332

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 62/398 (15%), Positives = 127/398 (31%), Gaps = 31/398 (7%)

Query: 11  RGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTL--GTNSSKILDR 68
             + F +  +LE LD+       +     I    +  L  + L + +L    N    +  
Sbjct: 141 LPEYFSNLTNLEHLDLS------SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 69  GLCSLVHLQELYIYNNDLRGSLPW-CMANMTSLRILYVSSNQLTG-----SISSSPLVHL 122
           G    + L +L + NN    ++   C+  +  L +  +   +            S L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 123 TSIEELHLSNNHFQIPISLEP--LFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRL 180
            ++        +    +          + +  F   +  I      S +    + +L   
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 181 SLSSGYGDGVIFPKFLYHQH-------------DLEYVDLSHMKMNG-EFPTWLLENNTN 226
                    +   K L                  LE++DLS   ++     +      T+
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 227 LESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNAL 286
           L+ L L  + +           ++L  LD  ++N +      +   L  L  L+IS    
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 287 DGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNL 346
             +    F  +  L++L +  N         +     NL +L LS   LE    +   +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 384
           ++L+ L +  N           +   L+ ++L+ N   
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 53/267 (19%), Positives = 90/267 (33%), Gaps = 25/267 (9%)

Query: 304 DVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFV 360
                    +IP++L     + + L LS N    L  + F    +   L+ L L      
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQ 65

Query: 361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420
                +      L  L L  N +  +       L+ LQ ++  + +L          L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 421 LQILDISDNNI-SGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSL----VTLDL 474
           L+ L+++ N I S  LP  F  L ++EH+ LS N +   +        H +    ++LDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184

Query: 475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDL------SNNNL 527
           S N +N  I        +L  L L +N     V       L  L++  L      +  NL
Sbjct: 185 SLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 528 HGPIPPCFDNTTLHESYSNSSSPNKQF 554
                   +            +    +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYY 270

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (357), Expect = 4e-36
 Identities = 98/516 (18%), Positives = 175/516 (33%), Gaps = 66/516 (12%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYV 105
            ++K L LS + +    + I    L +  +LQ L + ++ +         ++ SL  L +
Sbjct: 26  AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEIT 165
           S N L+ S+SSS    L+S++ L+L  N +Q  + +  LF +                  
Sbjct: 82  SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLT---------------- 123

Query: 166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNT 225
                      L  L + +      I          L  +++  + +   + +  L++  
Sbjct: 124 ----------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIR 172

Query: 226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNA 285
           ++  L L     A    +       +R L++ + N           V      +      
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFR 231

Query: 286 LDGSIPSSFGNM----------KFLQLLDVTNNQLT-------GEIPEHLAVGCVNLEYL 328
                  SF  +            ++  D T N L          + E   V  V +  L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIP 388
            +    L   + +    L  +K + +E +               LE L L+ N +     
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 389 RW---LGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 443
           +     G    LQ +++ +NHL            L  L  LDIS N       SC  P  
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411

Query: 444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
           +  ++LS   +   +K        +L  LD+S N L+ S S     L +L  L +  N L
Sbjct: 412 MRFLNLSSTGIR-VVKTCIP---QTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKL 463

Query: 504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
           +  +P        L ++ +S N L       FD  T
Sbjct: 464 K-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (340), Expect = 7e-34
 Identities = 86/504 (17%), Positives = 165/504 (32%), Gaps = 60/504 (11%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
           +  +L+ L L  S +    + I      SL  L+ L + +N L          ++SL+ L
Sbjct: 48  ACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
            +  N       +S   +LT+++ L + N      I        + L     K   +   
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-- 161

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL--- 220
                        +  L+L        +   F      + Y++L    +     + L   
Sbjct: 162 -NYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 221 ----LENNTNLESLFLVNDSLAGPFRLP--IHSHKRLRLLDISNNNFRGHIPVEIGDV-- 272
                          L ++S     +L   I     +   D + N      P E   V  
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 273 -----LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEY 327
                   +  L+I    L   + + +  ++ ++ + V N+++   +P   +    +LE+
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEF 338

Query: 328 LALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 384
           L LS N          +      +L+ L L  NH      +S+ K               
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-----RSMQK--------------- 378

Query: 385 GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSI 444
                 L  L  L  + + +N    P+P      + ++ L++S   I   + +C  P ++
Sbjct: 379 --TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-PQTL 433

Query: 445 EHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
           E + +S N L              L  L +S N+L  ++ D       L  + +  N L+
Sbjct: 434 EVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK 486

Query: 505 GEVPVQLCKLNQLQLLDLSNNNLH 528
                   +L  LQ + L  N   
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (315), Expect = 1e-30
 Identities = 76/448 (16%), Positives = 141/448 (31%), Gaps = 50/448 (11%)

Query: 99  SLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNN 158
           +  +    S   T    S P     +++ L LS N     I    L   + L+V   K++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 159 EINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPT 218
            IN                             I     Y    LE++DLS   ++    +
Sbjct: 61  RIN----------------------------TIEGDAFYSLGSLEHLDLSDNHLS-SLSS 91

Query: 219 WLLENNTNLESLFLVNDSLAG-PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF 277
                 ++L+ L L+ +            +   L+ L I N      I       L  L 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG 337
            L I   +L      S  +++ +  L +  ++    + E  A    ++ YL L + +L  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 338 HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397
             FS          ++           +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLN 264

Query: 398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHG 456
                  +  +    +   +   ++ L I    +   L + +  L  ++ + +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 457 QLKRGTFFNYHSLVTLDLSYNRLNGSI---SDWVDGLSQLSHLILGHNNLE--GEVPVQL 511
            +      +  SL  LDLS N +       S        L  L+L  N+L    +    L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 512 CKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
             L  L  LD+S N  H P+P       
Sbjct: 384 LTLKNLTSLDISRNTFH-PMPDSCQWPE 410

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 14/256 (5%)

Query: 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHF 359
            D  +   T  IP  L      ++ L LS N    +            NL+ L L+ +  
Sbjct: 10  CDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKSSRI 62

Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL-EGPIPVEFCQL 418
                 +      LE L L++N LS +   W G L+ L+++ +  N      +   F  L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 419 DWLQILDISDNNISGSLP-SCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY 476
             LQ L I +      +    F  L S+  + +    L    +  +  +   +  L L  
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHL 181

Query: 477 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFD 536
           +     +  + D LS + +L L   NL       L        +              F+
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 537 NTTLHESYSNSSSPNK 552
                  Y    S  +
Sbjct: 242 ELLKLLRYILELSEVE 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  138 bits (350), Expect = 1e-35
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 10/291 (3%)

Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
            +P       RLLD+  N  +  +  +     P L  L ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNH 358
            L + +N+L   IP  +  G  NL  L +S N    L  +MF    +L NLK L++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 359 FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL 418
            V    ++ S    LE L L   +L+ +    L +L  L  + +   ++       F +L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 419 DWLQILDISDNNISGSL-PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
             L++L+IS      ++ P+C + L++  + ++   L   +      +   L  L+LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            ++      +  L +L  + L    L    P     LN L++L++S N L 
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (303), Expect = 2e-29
 Identities = 56/283 (19%), Positives = 105/283 (37%), Gaps = 17/283 (6%)

Query: 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT 311
           R +      F   +P  I         L++  N +       F +   L+ L++  N ++
Sbjct: 14  RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 312 GEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS 368
             +         NL  L L +N    +   +F+    L+NL  L +  N  V  +     
Sbjct: 70  -AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIVILLDYMFQ 125

Query: 369 KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDIS 427
             + L+ L + +N L  +  R    L  L+ + + K +L   IP E    L  L +L + 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLR 184

Query: 428 DNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW 486
             NI+      F  L  ++ + +S       +     +   +L +L +++  L  ++   
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLT-AVPYL 242

Query: 487 V-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
               L  L  L L +N +       L +L +LQ + L    L 
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 1e-27
 Identities = 67/311 (21%), Positives = 120/311 (38%), Gaps = 19/311 (6%)

Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL----AGPFRLPIHSHKRLRLLDI 256
           +   +DL   ++          +  +LE L L  + +     G F    ++   LR L +
Sbjct: 33  ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGL 87

Query: 257 SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE 316
            +N  +  IP+ +   L  L  L+IS N +   +   F ++  L+ L+V +N L   I  
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 317 HLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
               G  +LE L L      S+     S   +L  L  L+L   +       S  + + L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
           + L +++      +         L  + +   +L     +    L +L+ L++S N IS 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 434 SLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ 492
              S  H L  ++ + L    L   ++   F   + L  L++S N+L          +  
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 493 LSHLILGHNNL 503
           L  LIL  N L
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 4e-25
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 13/237 (5%)

Query: 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGN 357
           + +     +    +PE +         L L  N   +L    F+   +  +L+ L+L  N
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNEN 66

Query: 358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 417
                 P + +  F L  L L +N L  +       L+ L  + + +N +   +   F  
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 418 LDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY 476
           L  L+ L++ DN++       F  L S+E + L K  L   +      + H L+ L L +
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 477 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533
             +N         L +L  L + H      +         L  L +++ NL   +P 
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.9 bits (244), Expect = 7e-22
 Identities = 68/345 (19%), Positives = 126/345 (36%), Gaps = 49/345 (14%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYV 105
              + L L  + +      +      S  HL+EL +  N +    P    N+ +LR L +
Sbjct: 32  TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEP-LFNH-SRLKVFWAKNNEINAE 163
            SN+L   I       L+++ +L +S N       L   +F     LK     +N     
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDN----- 138

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLEN 223
                        L  +S            +     + LE + L    +    PT  L +
Sbjct: 139 ------------DLVYIS-----------HRAFSGLNSLEQLTLEKCNLT-SIPTEALSH 174

Query: 224 NTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM 283
              L  L L + ++            RL++L+IS+  +   +       L  L SL+I+ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITH 233

Query: 284 NALDGSIPS-SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHM 339
             L  ++P  +  ++ +L+ L+++ N ++  I   +    + L+ + L       +E + 
Sbjct: 234 CNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 340 FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 384
           F     L  L+ L + GN               LE L L++N L+
Sbjct: 292 FR---GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 75/329 (22%), Positives = 123/329 (37%), Gaps = 44/329 (13%)

Query: 9   VLRGQGFPHFKSLELLDMECTRIAL--NTSFLQIISESMPSLKYLSLSDSTLGTNSSKIL 66
            L    F  F  LE L++    ++     +F      ++ +L+ L L  + L      I 
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAF-----NNLFNLRTLGLRSNRL----KLIP 96

Query: 67  DRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE 126
                 L +L +L I  N +   L +   ++ +L+ L V  N L   IS      L S+E
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLE 155

Query: 127 ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGY 186
           +L L   +    I  E L +   L V   ++  INA                        
Sbjct: 156 QLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINA------------------------ 190

Query: 187 GDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIH 246
               I        + L+ +++SH           L    NL SL + + +L     L + 
Sbjct: 191 ----IRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVR 245

Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
               LR L++S N     I   +   L  L  + +    L    P +F  + +L++L+V+
Sbjct: 246 HLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
            NQLT  + E +     NLE L L +N L
Sbjct: 305 GNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 35/258 (13%), Positives = 80/258 (31%), Gaps = 46/258 (17%)

Query: 9   VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDR 68
           +L    F    +L+ L++    +             + SL+ L+L    L    + I   
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEKCNL----TSIPTE 170

Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
            L  L  L  L + + ++     +    +  L++L +S      +++ + L +  ++  L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSL 229

Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
            +++ +    +    + +   L+      N I+                           
Sbjct: 230 SITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIST-------------------------- 262

Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL----AGPFRLP 244
             I    L+    L+ + L   ++      +       L  L +  + L       F   
Sbjct: 263 --IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF--- 316

Query: 245 IHSHKRLRLLDISNNNFR 262
            HS   L  L + +N   
Sbjct: 317 -HSVGNLETLILDSNPLA 333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (345), Expect = 6e-35
 Identities = 99/481 (20%), Positives = 172/481 (35%), Gaps = 90/481 (18%)

Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
              +L    +  +   ++  ++     ++  +  L      +    S   + +L ++ ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
           + SNN       + PL N ++L      NN+I                L+ L+       
Sbjct: 74  NFSNNQLT---DITPLKNLTKLVDILMNNNQIADITP-----------LANLT------- 112

Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
                       +L  + L + ++    P   L+N TNL  L L +++++      +   
Sbjct: 113 ------------NLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI--SALSGL 155

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
             L+ L   N       P+     L  L  L+IS N +  S  S    +  L+ L  TNN
Sbjct: 156 TSLQQLSFGNQ-VTDLKPLA---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 209

Query: 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS 368
           Q++   P        NL+ L+L+ N L+        +LTNL  L L  N      P  LS
Sbjct: 210 QISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 262

Query: 369 KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 428
               L  L L  N +S + P  L  LT L ++ + +N LE   P     L  L  L +  
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318

Query: 429 NNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD 488
           NNIS   P                            +   L  L    N+++   S  + 
Sbjct: 319 NNISDISP--------------------------VSSLTKLQRLFFYNNKVSDVSS--LA 350

Query: 489 GLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 548
            L+ ++ L  GHN +    P  L  L ++  L L++            N ++  +  N +
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

Query: 549 S 549
            
Sbjct: 409 G 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.3 bits (217), Expect = 2e-18
 Identities = 64/344 (18%), Positives = 129/344 (37%), Gaps = 43/344 (12%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
             +  +L  L++    I+  ++        + SL+ LS  +       + +    L +L 
Sbjct: 130 LKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLSFGN-----QVTDLK--PLANLT 177

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
            L+ L I +N +       +A +T+L  L  ++NQ++     +PL  LT+++EL L+ N 
Sbjct: 178 TLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQ 232

Query: 135 FQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPK 194
            +    +  L + + L      NN+I+     S  LT    +L+ L L +     +    
Sbjct: 233 LK---DIGTLASLTNLTDLDLANNQISNLAPLS-GLT----KLTELKLGANQISNISPLA 284

Query: 195 FLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLL 254
            L     L  ++L+  ++    P   + N  NL  L L  ++++     P+ S  +L+ L
Sbjct: 285 GLTA---LTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRL 336

Query: 255 DISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEI 314
              NN       +     L  +  L+   N +    P    N+  +  L + +   T   
Sbjct: 337 FFYNNKVSDVSSLAN---LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391

Query: 315 PEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGN 357
             + A    N+       N     +      +  +     +  N
Sbjct: 392 VNYKA----NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 8e-34
 Identities = 81/378 (21%), Positives = 136/378 (35%), Gaps = 35/378 (9%)

Query: 56  STLGTNSSKILD-RGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSI 114
           +TL T  + I        L       +    +   +      + S+  L V+  ++    
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA--- 57

Query: 115 SSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
           S   + +LT++E L+L+ N       + PL N  +L   +   N+I  +I+   +LT   
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT--- 110

Query: 175 FQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVN 234
             L  L L     D +     L +   +  ++L       +     L N T L  L +  
Sbjct: 111 -NLRELYL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTE 164

Query: 235 DSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSF 294
             +      PI +   L  L ++ N      P+     L  L      +N +    P   
Sbjct: 165 SKVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--V 217

Query: 295 GNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL 354
            NM  L  L + NN++T   P         L +L +  N +     +   +LT LK L +
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272

Query: 355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE 414
             N         L+    L  LFLNNN L       +G LT L  + + +NH+    P  
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 415 FCQLDWLQILDISDNNIS 432
              L  +   D ++  I 
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (304), Expect = 3e-30
 Identities = 83/452 (18%), Positives = 156/452 (34%), Gaps = 108/452 (23%)

Query: 76  LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
              L      +    P   A++       +    +T  +       L SI +L ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 136 QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF 195
               S++ +   + L+      N+I         ++     LS L               
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQIT-------DISP----LSNLV-------------- 88

Query: 196 LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD 255
                 L  + +   K+        L+N TNL  L+L  D+++     P+ +  ++  L+
Sbjct: 89  -----KLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNISDI--SPLANLTKMYSLN 138

Query: 256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIP 315
           +  N+                            S  S   NM  L  L VT +++    P
Sbjct: 139 LGANHNL--------------------------SDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 316 EHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEG 375
             +A    +L  L+L+ N +E    S   +LT+L +     N      P  ++    L  
Sbjct: 173 --IA-NLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 435
           L + NN ++ + P  L NL++L  + +  N +          L  L++L++  N IS   
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS--- 278

Query: 436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSH 495
                   I  +          L          L +L L+ N+L     + + GL+ L+ 
Sbjct: 279 -------DISVL--------NNLS--------QLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 496 LILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
           L L  N++    P  L  L+++   D +N  +
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (298), Expect = 2e-29
 Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 27/341 (7%)

Query: 202 LEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNF 261
                L    +         E   ++  L +  + +A      I     L  L+++ N  
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQI 78

Query: 262 RGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVG 321
               P+     L  L +L I  N +  +  S+  N+  L+ L +  + ++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 381
              +  L L  N     + S   N+T L +L +  +      P  ++    L  L LN N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 382 SLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHP 441
            +  + P  L +LT L +     N +    P     +  L  L I +N I+   P     
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS 243

Query: 442 LSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501
             +  + +  N +          +   L  L++  N+++  IS  ++ LSQL+ L L +N
Sbjct: 244 -QLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNN 297

Query: 502 NLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542
            L  E    +  L  L  L LS N++   I P    + +  
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (253), Expect = 2e-23
 Identities = 81/371 (21%), Positives = 139/371 (37%), Gaps = 63/371 (16%)

Query: 14  GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
                +S+  L +   ++    S   I  E + +L+YL+L+ + +   S       L +L
Sbjct: 39  TQEELESITKLVVAGEKV---ASIQGI--EYLTNLEYLNLNGNQITDISP------LSNL 87

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
           V L  LYI  N +         N+T+LR LY++ + ++     SPL +LT +  L+L  N
Sbjct: 88  VKLTNLYIGTNKITDISAL--QNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGAN 142

Query: 134 HFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFP 193
                  L PL N + L       +    ++     +                       
Sbjct: 143 --HNLSDLSPLSNMTGLNYLTVTES----KVKDVTPIA---------------------- 174

Query: 194 KFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRL 253
               +  DL  + L++ ++    P   L + T+L       + +      P+ +  RL  
Sbjct: 175 ----NLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDI--TPVANMTRLNS 225

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
           L I NN      P+     L  L  L I  N +  S  ++  ++  L++L+V +NQ++  
Sbjct: 226 LKIGNNKITDLSPLAN---LSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD- 279

Query: 314 IPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
               L      L  L L+NN L          LTNL  L L  NH     P  L+    +
Sbjct: 280 -ISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 374 EGLFLNNNSLS 384
           +     N  + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 24/138 (17%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSD------STLGTNSS-KI 65
               +   L  L +   +I   +        ++  L +L +        + +   +  K+
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPL-----ANLSQLTWLEIGTNQISDINAVKDLTKLKM 269

Query: 66  LD---------RGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISS 116
           L+           L +L  L  L++ NN L       +  +T+L  L++S N +T     
Sbjct: 270 LNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DI 326

Query: 117 SPLVHLTSIEELHLSNNH 134
            PL  L+ ++    +N  
Sbjct: 327 RPLASLSKMDSADFANQV 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 1e-30
 Identities = 64/311 (20%), Positives = 118/311 (37%), Gaps = 22/311 (7%)

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
           L+ +     + +   +    F     +    +++   N+  R  +P  + D    +  LN
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEG 337
           ++   ++     +F     +Q L +  N +   +P H+      L  L L  N   SL  
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 338 HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397
            +F    N   L  L +  N+       +      L+ L L++N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ 457
            H  +  N L             ++ LD S N+I+         + +  + L  N L   
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT-- 239

Query: 458 LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 517
                  NY  LV +DLSYN L   +      + +L  L + +N L   + +    +  L
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 518 QLLDLSNNNLH 528
           ++LDLS+N+L 
Sbjct: 298 KVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (305), Expect = 4e-30
 Identities = 72/369 (19%), Positives = 137/369 (37%), Gaps = 24/369 (6%)

Query: 161 NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL 220
             E     S    +     + +     D     + +   +  + V   +  M  + P  L
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMR-KLPAAL 64

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
           L++   +E L L +  +             ++ L +  N  R ++P  +   +P L  L 
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF 340
           +  N L       F N   L  L ++NN L   I +       +L+ L LS+N L     
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDL 182

Query: 341 SRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHI 400
           S    + +L    +  N        +L+    +E L  ++NS++ ++         L  +
Sbjct: 183 S---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTIL 231

Query: 401 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLK 459
            +  N+L             L  +D+S N +   +   F  +  +E +++S N L     
Sbjct: 232 KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-- 287

Query: 460 RGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 519
                   +L  LDLS+N L   +        +L +L L HN++     ++L   + L+ 
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKN 343

Query: 520 LDLSNNNLH 528
           L LS+N+  
Sbjct: 344 LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (277), Expect = 2e-26
 Identities = 74/415 (17%), Positives = 145/415 (34%), Gaps = 50/415 (12%)

Query: 60  TNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPL 119
               K +D  L       +++I          +    + + +I+   ++ +   + ++ L
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65

Query: 120 VHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSR 179
                +E L+L++   +  I          ++  +   N I                   
Sbjct: 66  DSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------- 107

Query: 180 LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG 239
                      + P    +   L  + L    ++   P  +  N   L +L + N++L  
Sbjct: 108 -----------LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 240 PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF 299
                  +   L+ L +S+N    H+ +    ++P LF  N+S N L     S+      
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
           ++ LD ++N +   +   +    V L  L L +N+L     +   N   L  + L  N  
Sbjct: 207 VEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 260

Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 419
              +     K   LE L+++NN L   +  +   +  L+ + +  NHL   +     Q D
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFD 318

Query: 420 WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474
            L+ L +  N+I     S  H L  +++ LS N       R  F N       D 
Sbjct: 319 RLENLYLDHNSIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 72/394 (18%), Positives = 147/394 (37%), Gaps = 61/394 (15%)

Query: 7   NGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKIL 66
             V  G       + +++  + + +         + +S   ++ L+L+D  +     +I 
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQI----EEID 85

Query: 67  DRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE 126
                    +Q+LY+  N +R   P    N+  L +L +  N L+ S+      +   + 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 127 ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGY 186
            L +SNN+ +  I  +     + L+     +N                 +L+ + LS   
Sbjct: 145 TLSMSNNNLER-IEDDTFQATTSLQNLQLSSN-----------------RLTHVDLS--- 183

Query: 187 GDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIH 246
               + P        L + ++S+  ++       L     +E L   ++S+     +   
Sbjct: 184 ----LIPS-------LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVRGP 223

Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
            +  L +L + +NN        +    PGL  +++S N L+  +   F  M+ L+ L ++
Sbjct: 224 VNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN-FNLTNLKWLQLEGNHFVGEIPQ 365
           NN+L   +  +       L+ L LS+N L      RN      L+ L L+ N  V     
Sbjct: 281 NNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLKLS 336

Query: 366 SLSKCFVLEGLFLNNNSLSGM-IPRWLGNLTRLQ 398
           +      L+ L L++N      +     N+ R  
Sbjct: 337 THHT---LKNLTLSHNDWDCNSLRALFRNVARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 437 SCFHPLSIEHVHLSKNMLHGQLKRG-TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSH 495
           +  +      VH+  +M    +  G      ++   +    + +    +  +D   Q+  
Sbjct: 16  NLQYDCVFYDVHI--DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 496 LILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
           L L    +E          + +Q L +  N +    P  F N  
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (304), Expect = 1e-29
 Identities = 82/494 (16%), Positives = 158/494 (31%), Gaps = 61/494 (12%)

Query: 41  ISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSL 100
           I ++    K   ++DS+L     + L     S  +++EL +  N L       +A  T L
Sbjct: 5   IKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI 160
            +L +SSN L     +  L  L+++  L L+NN+      ++ L     ++   A NN  
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANN-- 109

Query: 161 NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL 220
                           +SR+S S G G               + + L++ K+        
Sbjct: 110 ---------------NISRVSCSRGQG--------------KKNIYLANNKIT-MLRDLD 139

Query: 221 LENNTNLESLFLVNDSLAG-PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL 279
               + ++ L L  + +    F     S   L  L++  N     +  ++      L +L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTL 196

Query: 280 NISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM 339
           ++S N L   +   F +   +  + + NN+L   I + L     NLE+  L  N      
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CG 252

Query: 340 FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQH 399
             R+F   N +   +          Q+  +C V             +   +   L  L+ 
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 400 IMMPKNHLEG----PIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNML 454
                   +G     +  E       + +D         +        +   +   K  L
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 455 HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLI-LGHNNLEGEVPVQLCK 513
             +        +  L             +    +  S L  L  +     E  V  Q  +
Sbjct: 373 D-EQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 514 LNQLQLLDLSNNNL 527
            N ++  D+  +  
Sbjct: 431 NNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (286), Expect = 3e-27
 Identities = 62/456 (13%), Positives = 121/456 (26%), Gaps = 77/456 (16%)

Query: 89  SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHS 148
           ++     N    +I  V+ + L     +S      +++EL LS N               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN--------------- 44

Query: 149 RLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLS 208
                                       LS++S              L     LE ++LS
Sbjct: 45  ---------------------------PLSQIS-----------AADLAPFTKLELLNLS 66

Query: 209 HMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVE 268
              +        LE+ + L +L L N+ +       +     +  L  +NNN    +   
Sbjct: 67  SNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCS 117

Query: 269 IGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL 328
                 G  ++ ++ N +        G    +Q LD+  N++       LA     LE+L
Sbjct: 118 R---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIP 388
            L  N +             LK L L  N     +         +  + L NN L  +I 
Sbjct: 175 NLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 389 RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSI-EHV 447
           + L     L+H  +  N        +F      ++  ++   +           ++    
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 448 HLSKNML----HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
           H               R           L    +     +    +  ++   +       
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQY 348

Query: 504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
              +     +      L+     L   +        
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (289), Expect = 1e-28
 Identities = 58/295 (19%), Positives = 111/295 (37%), Gaps = 19/295 (6%)

Query: 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
                   ++ ++L  ++ S   +   ++ LD++ N L+ +I          LE L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 333 NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLG 392
           N L  +      +L+ L+ L L  N+      Q L     +E L   NN++S +      
Sbjct: 68  NVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG-SLPSCFHPL-SIEHVHLS 450
               +    +  N +     ++      +Q LD+  N I   +         ++EH++L 
Sbjct: 121 GKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510
            N ++  +K    F    L TLDLS N+L   +       + ++ + L +N L   +   
Sbjct: 178 YNFIY-DVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 511 LCKLNQLQLLDLSNNNLH-GPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQ 564
           L     L+  DL  N  H G +   F      ++ +  +      +       P 
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 56/344 (16%), Positives = 103/344 (29%), Gaps = 71/344 (20%)

Query: 89  SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHS 148
           ++     N    +I  V+ + L     +S      +++EL LS N               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN--------------- 44

Query: 149 RLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLS 208
                                       LS++S              L     LE ++LS
Sbjct: 45  ---------------------------PLSQIS-----------AADLAPFTKLELLNLS 66

Query: 209 HMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVE 268
              +        LE+ + L +L L N+ +       +     +  L  +NNN    +   
Sbjct: 67  SNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCS 117

Query: 269 IGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL 328
                 G  ++ ++ N +        G    +Q LD+  N++       LA     LE+L
Sbjct: 118 R---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIP 388
            L  N +             LK L L  N     +         +  + L NN L  +I 
Sbjct: 175 NLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 389 RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
           + L     L+H  +  N       +        ++  ++   + 
Sbjct: 231 KALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 9e-22
 Identities = 69/363 (19%), Positives = 128/363 (35%), Gaps = 53/363 (14%)

Query: 38  LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM 97
           +  I ++    K   ++DS+L     + L     S  +++EL +  N L       +A  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 98  TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKN 157
           T L +L +SSN L     +  L  L+++  L L+NN+      ++ L     ++   A N
Sbjct: 58  TKLELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN 108

Query: 158 NEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFP 217
           N                  +SR+S S G G               + + L++ K+     
Sbjct: 109 N-----------------NISRVSCSRGQG--------------KKNIYLANNKIT-MLR 136

Query: 218 TWLLENNTNLESLFLVNDSLAG-PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGL 276
                  + ++ L L  + +    F     S   L  L++  N     +  ++      L
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKL 193

Query: 277 FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLE 336
            +L++S N L   +   F +   +  + + NN+L   I + L     NLE+  L  N   
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH 250

Query: 337 GHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTR 396
                R+F   N +   +          Q+  +C V             +   +   L  
Sbjct: 251 -CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 397 LQH 399
           L H
Sbjct: 310 LGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 47/329 (14%), Positives = 116/329 (35%), Gaps = 26/329 (7%)

Query: 202 LEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNF 261
            +   ++   +  +    L ++  N++ L L  + L+      +    +L LL++S+N  
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 262 RGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVG 321
                 ++   L  L +L+++ N +             ++ L   NN ++  +       
Sbjct: 71  Y-ETL-DLES-LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--- 118

Query: 322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG-EIPQSLSKCFVLEGLFLNN 380
               + + L+NN +           + +++L L+ N        +  +    LE L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 440
           N +   +   +    +L+ + +  N L   +  EF     +  + + +N +   +     
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 441 PL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 499
              ++EH  L  N  H    R  F     + T+     +    ++   +    +  L   
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHY 291

Query: 500 HNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
                 ++P         +L+ L +++ H
Sbjct: 292 GAYCCEDLP----APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 25/166 (15%), Positives = 63/166 (37%), Gaps = 13/166 (7%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
           EI Q+ ++    +   + ++SL   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG 481
           ++L++S N +           ++  + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 482 SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
            +S          ++ L +N +     +     +++Q LDL  N +
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSK 451
           N  R +   +  + L+  +         ++ LD+S N +S    +   P   +E ++LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 452 NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQL 511
           N+L+   +     +  +L TLDL+ N +       +     +  L   +NN+     V  
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSC 116

Query: 512 CKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
            +    + + L+NN +           +
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRS 144

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 32/233 (13%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSD---STLGTNSS-------- 63
              F  LELL++    +           ES+ +L+ L L++     L    S        
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDL-----ESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108

Query: 64  -KILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHL 122
             I           + +Y+ NN +           + ++ L +  N++     +      
Sbjct: 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 123 TSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNN---EINAEITQSPSLTAPNFQLSR 179
            ++E L+L  N       ++     ++LK     +N    +  E   +  +T     L  
Sbjct: 169 DTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT--WISLRN 223

Query: 180 LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL 232
             L           K L    +LE+ DL     +          N  ++++  
Sbjct: 224 NKLVL-------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL 522
             N +      ++ + L  +++        +  L L  N L       L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 523 SNNNLHGPIPPCFDNTTLHE 542
           S+N L+         +TL  
Sbjct: 66  SSNVLYE-TLDLESLSTLRT 84

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (296), Expect = 2e-28
 Identities = 77/473 (16%), Positives = 157/473 (33%), Gaps = 48/473 (10%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
           S+  L+ L +S + +      +          L+ L + +N L   +        +L+ L
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKF----NQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
            +S N            +++ ++ L LS  H +   S+ P+ + +  KV          +
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEK 154

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMK---MNGEFPTWL 220
                 L   N +   +   +      I    +    +LE  ++  +        F + L
Sbjct: 155 E-DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIH-----SHKRLRLLDISNNNFRGHIPVE----IGD 271
            +  TN +   L  +++   +   I       H  +    ISN   +G +        G 
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 272 VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS 331
            L  L    +  +         +     + + + T +     +            +L  S
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFS 332

Query: 332 NNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWL 391
           NN L   +F    +LT L+ L L+ N       + LSK      +               
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQL-----KELSKIA---EMTT------------- 371

Query: 392 GNLTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
             +  LQ + + +N +        C     L  L++S N ++ ++  C  P  I+ + L 
Sbjct: 372 -QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLH 429

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
            N +   + +       +L  L+++ N+L        D L+ L  + L  N  
Sbjct: 430 SNKIK-SIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 2e-24
 Identities = 90/478 (18%), Positives = 166/478 (34%), Gaps = 48/478 (10%)

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
               L I  N +       + +++ LRIL +S N++   +  S       +E L LS+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 135 FQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNF-----QLSRLSLSSGYGDG 189
               IS  P  N   LK      N  +       +L          QL  L LS+ + + 
Sbjct: 81  LVK-ISCHPTVN---LKHLDLSFNAFD-------ALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE-NNTNLESLFLVNDSLAGPFRLPIHSH 248
                  +       + L       E P  L + N  +L  +F  N        + + + 
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
             L L +I            +  +     +  +S   L+    +    ++ LQL+  T  
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT- 248

Query: 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-----NLTNLKWLQLEGNHFVGEI 363
                           + Y ++SN  L+G +  R+F     +L  L   Q+  + F    
Sbjct: 249 ----------------VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 423
                    +       +    +       ++   H+    N L   +      L  L+ 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 424 LDISDNNISGSLPSC---FHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
           L +  N +   L         + S++ + +S+N +    K+G      SL++L++S N L
Sbjct: 353 LILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 480 NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
             +I        ++  L L  N ++  +P Q+ KL  LQ L++++N L       FD 
Sbjct: 412 TDTIFR--CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 4e-16
 Identities = 81/403 (20%), Positives = 137/403 (33%), Gaps = 22/403 (5%)

Query: 15  FPHFKSLELLDMEC---TRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILD--RG 69
                +L+ LD+       + +   F      +M  LK+L LS + L  +S   +     
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEF-----GNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILY--VSSNQLTGSISSSPLVHLTSIEE 127
              L+ L E Y    D    L         +           L  S+ +   + L++I+ 
Sbjct: 141 SKVLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 128 LHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSS-GY 186
           +   N        L  L  + +L      N E              +  +   S+S+   
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 187 GDGVIFPKFLYHQHDLEYVDLSHMKMN--GEFPTWLLENNTNLESLFLVNDSLAGPFRLP 244
              + F  F Y    L+ + +  +  +  G   +++ E  +N+               L 
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 245 IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALD--GSIPSSFGNMKFLQL 302
                    LD SNN        E    L  L +L + MN L     I      MK LQ 
Sbjct: 320 PSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE 362
           LD++ N ++ +  +       +L  L +S+N L   +F        +K L L  N     
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-S 435

Query: 363 IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN 405
           IP+ + K   L+ L + +N L  +       LT LQ I +  N
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 55/330 (16%), Positives = 111/330 (33%), Gaps = 36/330 (10%)

Query: 253 LLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG 312
           L+D S N    H+P ++         LNIS N +     S   ++  L++L +++N++  
Sbjct: 4   LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF-VGEIPQSLSKCF 371
            +   +      LEYL LS+N L            NLK L L  N F    I +      
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 372 VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI 431
            L+ L L+   L       + +L   + +++                + LQ  +    +I
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED-----PEGLQDFNTESLHI 170

Query: 432 SGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG-- 489
                  FH +    V    N+    +K     N  S     L+  + N  +S+      
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 490 ---------------LSQLSHLILGHNNLEGEVPVQL-----CKLNQLQLLDLSNNNLHG 529
                           + + +  + +  L+G++  +        L  L +  + ++    
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 530 PIPPCFDNTTLHESYSNSSSPNKQFEIFFF 559
           P    ++  +     + + S  +   +   
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 6/203 (2%)

Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
              L ++ N +S +    + +L++L+ +++  N ++      F     L+ LD+S N + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 433 GSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
             +    HP  +++H+ LS N          F N   L  L LS   L  S    +  L+
Sbjct: 83  -KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 492 QLS-HLILGHNNLEGEVPVQLCKLNQLQL-LDLSNNNLHGPIPPCFDNTTLHESYSNSSS 549
                L+LG    E E P  L   N   L +    N     I      T  +   SN   
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 550 PNKQFEIFFFIQGPQGHPRLATL 572
             +  +  +F+           L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKL 222

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 10/122 (8%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
               KSL+ LD+      ++    +       SL  L++S + L     + L        
Sbjct: 370 TTQMKSLQQLDISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------ 421

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
            ++ L +++N ++ S+P  +  + +L+ L V+SNQL  S+       LTS++++ L  N 
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479

Query: 135 FQ 136
           + 
Sbjct: 480 WD 481

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (288), Expect = 3e-28
 Identities = 52/344 (15%), Positives = 107/344 (31%), Gaps = 48/344 (13%)

Query: 195 FLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLL 254
             +H    E +          +   L    +  +  +  + +         +S+   ++ 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIE 61

Query: 255 DISNNNFRGHIPVEIGD-VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
             +    +      + D   PG  +L +    L    P     +  LQ + +    L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 314 IPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQSLSKCFV 372
           +P+ +      LE L L+ N L       +  +L  L+ L +     + E+P+ L+    
Sbjct: 119 LPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 373 ---------LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 423
                    L+ L L    +   +P  + NL  L+ + +  + L   +      L  L+ 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233

Query: 424 LDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI 483
           LD+       + P  F                G            L  L L       ++
Sbjct: 234 LDLRGCTALRNYPPIF----------------GGRA--------PLKRLILKDCSNLLTL 269

Query: 484 SDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
              +  L+QL  L L        +P  + +L    ++ +  +  
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 26/266 (9%)

Query: 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
             G  +L    +             +     D                   N +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 333 NSLEGHMFS-RNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWL 391
            +L+       +        L+L       + P    +   L+ + ++   L   +P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTM 123

Query: 392 GNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSK 451
                L+ + + +N L   +P     L+ L+ L I        LP               
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDAS------ 176

Query: 452 NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQL 511
                    G      +L +L L +  +  S+   +  L  L  L + ++ L   +   +
Sbjct: 177 ---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 512 CKLNQLQLLDLSNNNLHGPIPPCFDN 537
             L +L+ LDL         PP F  
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.6 bits (223), Expect = 1e-19
 Identities = 55/331 (16%), Positives = 107/331 (32%), Gaps = 37/331 (11%)

Query: 121 HLTSIEELHLSNNHFQIPISLEPLFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSR 179
           H +  E L+   +      +L P  +  S+ +  +  +        +  +   P  +   
Sbjct: 10  HSSGRENLYFQGST-----ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 180 LSLSSGYGDGVIFPKFLYH--QHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL 237
                           L    Q     ++L  + +  +FP       ++L+ + +    L
Sbjct: 65  GRALK------ATADLLEDATQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGL 116

Query: 238 AGPFRLP--IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFG 295
                LP  +     L  L ++ N  R  +P  I   L  L  L+I        +P    
Sbjct: 117 M---ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLA 171

Query: 296 NMKF---------LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-N 345
           +            LQ L +    +   +P  +A    NL+ L + N+ L          +
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA--LGPAIHH 227

Query: 346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN 405
           L  L+ L L G   +   P        L+ L L + S    +P  +  LT+L+ + +   
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 406 HLEGPIPVEFCQLDWLQILDISDNNISGSLP 436
                +P    QL    I+ +  +  +    
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 59/355 (16%), Positives = 107/355 (30%), Gaps = 48/355 (13%)

Query: 47  SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVS 106
             + L    ST        L      L   Q  Y  + +      W  AN  + +I   +
Sbjct: 13  GRENLYFQGSTA-------LRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRT 64

Query: 107 SNQLTGSISSSPLVHLTSIEELHLSNNHFQ-IPISLEPLFNHSRLKVFWAKNNEIN---A 162
              L  +              L L +      P   +  F  S L+        +     
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPD 121

Query: 163 EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE 222
            + Q   L      L+R  L +        P  +   + L  + +       E P  L  
Sbjct: 122 TMQQFAGLE--TLTLARNPLRA-------LPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNIS 282
            + + E   LVN                L+ L +     R  +P  I + L  L SL I 
Sbjct: 173 TDASGEHQGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIR 214

Query: 283 MNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN-NSLEGHMFS 341
            + L  ++  +  ++  L+ LD+         P     G   L+ L L + ++L      
Sbjct: 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLL--TLP 270

Query: 342 RNF-NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395
            +   LT L+ L L G   +  +P  +++      + +  +  + +         
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 43/261 (16%), Positives = 74/261 (28%), Gaps = 46/261 (17%)

Query: 288 GSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLT 347
           GS      +    + L    +       + L+      +    ++ +   H   R  N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRW-HSAWRQANSN 56

Query: 348 NLKWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN 405
           N +     G          L          L L +  L    P     L+ LQH+ +   
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 406 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFN 465
            L   +P    Q   L+ L ++ N +  +LP+                    L       
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLR-ALPASI----------------ASLN------ 150

Query: 466 YHSLVTLDLSY-NRL--------NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 516
              L  L +     L        +   S    GL  L  L L    +   +P  +  L  
Sbjct: 151 --RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 517 LQLLDLSNNNLHGPIPPCFDN 537
           L+ L + N+ L   + P   +
Sbjct: 208 LKSLKIRNSPLSA-LGPAIHH 227

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 27/206 (13%), Positives = 55/206 (26%), Gaps = 32/206 (15%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
           + +  + L  +G+  +      LS+         N    +        N    Q      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 405 NHLEG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463
             L+     +E         L++    +    P                    +L     
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQA----------------FRLS---- 104

Query: 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 523
                L  + +    L   + D +   + L  L L  N L   +P  +  LN+L+ L + 
Sbjct: 105 ----HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 524 NNNLHGPIPPCFDNTTLHESYSNSSS 549
                  +P    +T     +    +
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVN 184

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 13/98 (13%)

Query: 17  HFKSLELLDMECTRIALNTSFLQIISES---MPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           H   LE LD+         + L+           LK L L D     ++   L   +  L
Sbjct: 227 HLPKLEELDLR------GCTALRNYPPIFGGRAPLKRLILKDC----SNLLTLPLDIHRL 276

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLT 111
             L++L +        LP  +A + +  I+ V  +   
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (294), Expect = 6e-28
 Identities = 64/311 (20%), Positives = 118/311 (37%), Gaps = 22/311 (7%)

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
           L+ +     + +   +    F     +    +++   N+  R  +P  + D    +  LN
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEG 337
           ++   ++     +F     +Q L +  N +   +P H+      L  L L  N   SL  
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 338 HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397
            +F    N   L  L +  N+       +      L+ L L++N L+  +   L  +  L
Sbjct: 141 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 194

Query: 398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ 457
            H  +  N L             ++ LD S N+I+         + +  + L  N L   
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT-- 245

Query: 458 LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 517
                  NY  LV +DLSYN L   +      + +L  L + +N L   + +    +  L
Sbjct: 246 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

Query: 518 QLLDLSNNNLH 528
           ++LDLS+N+L 
Sbjct: 304 KVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (266), Expect = 2e-24
 Identities = 83/496 (16%), Positives = 172/496 (34%), Gaps = 68/496 (13%)

Query: 34  NTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWC 93
              +      ++ + K ++  +ST+     K+    L S   ++ L + +  +     + 
Sbjct: 39  QDVYFGFEDITLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYA 94

Query: 94  MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVF 153
            A   +++ LY+  N +   +      ++  +  L L  N     +      N  +L   
Sbjct: 95  FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTL 152

Query: 154 WAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMN 213
              NN +                              I          L+ + LS  ++ 
Sbjct: 153 SMSNNNLER----------------------------IEDDTFQATTSLQNLQLSSNRLT 184

Query: 214 GEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVL 273
                 L+    +L    +  + L+      +     +  LD S+N+    +    G V 
Sbjct: 185 -HVDLSLI---PSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVN 231

Query: 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333
             L  L +  N L  +  +   N   L  +D++ N+L  +I  H  V    LE L +SNN
Sbjct: 232 VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

Query: 334 SLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLG 392
            L     +     +  LK L L  NH +  + ++  +   LE L+L++NS+   +   L 
Sbjct: 289 RLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LS 342

Query: 393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN 452
               L+++ +  N  +             +  +++   +  +   C     +EH    K 
Sbjct: 343 THHTLKNLTLSHNDWD-----CNSLRALFR--NVARPAVDDADQHCKIDYQLEHGLCCKE 395

Query: 453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLC 512
                L R   +   + V   +   +   S +D ++ +  LSH I      +G VP+Q  
Sbjct: 396 SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYI----TQQGGVPLQGN 451

Query: 513 KLNQLQLLDLSNNNLH 528
           +  + ++ +L      
Sbjct: 452 EQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.8 bits (155), Expect = 7e-11
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 2/154 (1%)

Query: 387 IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIE 445
           I   L        + +     +     E   L+  +I+   ++ +     +       +E
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 446 HVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505
            ++L+   +  ++    F   H++  L + +N +          +  L+ L+L  N+L  
Sbjct: 79  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 506 EVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
                     +L  L +SNNNL       F  TT
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (287), Expect = 6e-27
 Identities = 70/324 (21%), Positives = 105/324 (32%), Gaps = 46/324 (14%)

Query: 224 NTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM 283
           N     L +    L     LP      +  L I +NN    +P         L +L +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN 343
           N L  S+P     +  L +       L              L  L +  N L     S  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT----SLP 137

Query: 344 FNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
                L+ L +  N     +P   S+   L  L+  NN L+  +P     L  L    + 
Sbjct: 138 VLPPGLQELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELS---VS 189

Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463
            N L   +P    +L     L   +N ++ SLP+   P  ++ + +S N L         
Sbjct: 190 DNQLAS-LPTLPSEL---YKLWAYNNRLT-SLPA--LPSGLKELIVSGNRL-----TSLP 237

Query: 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 523
                L  L +S NRL    +      S L  L +  N L   +P  L  L+    ++L 
Sbjct: 238 VLPSELKELMVSGNRL----TSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 524 NNNLHGPIPPCFDNTTLHESYSNS 547
            N L           T    YS  
Sbjct: 293 GNPLSERTLQALREITSAPGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 2e-22
 Identities = 77/430 (17%), Positives = 136/430 (31%), Gaps = 66/430 (15%)

Query: 71  CSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHL 130
           C       L +  + L  +LP C+     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 131 SNNHFQ-IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
           S N    +P+    L     L +F      + A  +    L     QL+ L +       
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP---- 141

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK 249
                       L+ + +S  ++    P       + L  L+  N+ L     LP     
Sbjct: 142 -----------GLQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPS 181

Query: 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
            L+ L +S+N     +P         L+ L    N L  S+P+       L+ L V+ N+
Sbjct: 182 GLQELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSG---LKELIVSGNR 232

Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSK 369
           LT  +P   +     L+ L +S N L     S     + L  L +  N     +P+SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 370 CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
                 + L  N LS    + L  +T       P         +                
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR----FDMAGASAPRETRALHLAA 338

Query: 430 NISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNR---LNGSISDW 486
                      P   +  H+     +       F  +   ++   ++ +       IS W
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNAD----AFSLFLDRLSETENFIKDAGFKAQISSW 394

Query: 487 VDGLSQLSHL 496
           +  L++   L
Sbjct: 395 LAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 1e-19
 Identities = 70/346 (20%), Positives = 122/346 (35%), Gaps = 56/346 (16%)

Query: 202 LEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNF 261
              +++    +    P  L     ++ +L + +++L     LP      LR L++S N  
Sbjct: 42  NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 262 RGHIPVEIG----------------DVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV 305
              +PV                    +  GL  L I  N L  S+P        LQ L V
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL-TSLPVLPPG---LQELSV 148

Query: 306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQ 365
           ++NQL   +P   +     L  L   NN L     S     + L+ L +  N     +P 
Sbjct: 149 SDNQLA-SLPALPS----ELCKLWAYNNQLT----SLPMLPSGLQELSVSDNQLA-SLPT 198

Query: 366 SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425
             S+   L  L+  NN L+  +P     L  L    +  N L   +PV   +L   + L 
Sbjct: 199 LPSE---LYKLWAYNNRLT-SLPALPSGLKELI---VSGNRLTS-LPVLPSEL---KELM 247

Query: 426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD 485
           +S N ++ SLP    P  +  + + +N L  +L      +  S  T++L  N L+     
Sbjct: 248 VSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPLSERTLQ 302

Query: 486 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI 531
            +  ++       G             +  +   L  ++  +    
Sbjct: 303 ALREITSA-PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.3 bits (216), Expect = 3e-18
 Identities = 68/383 (17%), Positives = 114/383 (29%), Gaps = 64/383 (16%)

Query: 19  KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQE 78
               +L++  + +        +       +  L + D     N+   L         L+ 
Sbjct: 40  NGNAVLNVGESGLT------TLPDCLPAHITTLVIPD-----NNLTSLPALPP---ELRT 85

Query: 79  LYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF-QI 137
           L +  N L  SLP     +  L I       L            + + +L +  N    +
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSL 136

Query: 138 PISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLY 197
           P+          L V   +   + A  ++   L A N QL+ L +               
Sbjct: 137 PVLPP---GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS------------ 181

Query: 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDIS 257
               L+ + +S  ++    PT      + L  L+  N+ L     LP      L+ L +S
Sbjct: 182 ---GLQELSVSDNQLA-SLPTLP----SELYKLWAYNNRLT---SLP-ALPSGLKELIVS 229

Query: 258 NNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH 317
            N     +PV   +    L  L +S N L  S+P        L  L V  NQLT  +PE 
Sbjct: 230 GNRLT-SLPVLPSE----LKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPES 279

Query: 318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLF 377
           L     +   + L  N L          +T+          F      +  +   L    
Sbjct: 280 LI-HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--L 336

Query: 378 LNNNSLSGMIPRWLGNLTRLQHI 400
              + L            R    
Sbjct: 337 AAADWLVPAREGEPAPADRWHMF 359

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (276), Expect = 1e-26
 Identities = 60/296 (20%), Positives = 109/296 (36%), Gaps = 29/296 (9%)

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
           LR++  S+      +P ++    P    L++  N +       F N+K L  L + NN++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 311 TGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSL 367
           + +I        V LE L LS N    L   M         L+ L++  N          
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVF 141

Query: 368 SKCFVLEGLFLNNNSL--SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425
           +    +  + L  N L  SG+       + +L +I +   ++   IP        L  L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH 198

Query: 426 ISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS 484
           +  N I+    +    L ++  + LS N +   +  G+  N   L  L L+ N+L   + 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 485 DWVDGLSQLSHLILGHNNLEG------EVPVQLCKLNQLQLLDLSNNNL-HGPIPP 533
             +     +  + L +NN+          P    K      + L +N + +  I P
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 53/291 (18%), Positives = 104/291 (35%), Gaps = 31/291 (10%)

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
             LLD+ NN     I       L  L +L +  N +    P +F  +  L+ L ++ NQL
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 311 TGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEI--PQ 365
             E+PE +      L+ L +  N    +   +F+    L  +  ++L  N          
Sbjct: 113 K-ELPEKMPK---TLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENG 165

Query: 366 SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425
           +      L  + + + +++  IP+  G    L  + +  N +          L+ L  L 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 426 ISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKR--GTFFNYHSLVTLDLSYNRLNG- 481
           +S N+IS            +  +HL+ N    +L +  G   ++  +  + L  N ++  
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNN----KLVKVPGGLADHKYIQVVYLHNNNISAI 278

Query: 482 -----SISDWVDGLSQLSHLILGHNNLEGEV--PVQLCKLNQLQLLDLSNN 525
                    +    +  S + L  N ++     P     +     + L N 
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 62/291 (21%), Positives = 114/291 (39%), Gaps = 26/291 (8%)

Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL----AGPFRLPIHSHKRLRLLDI 256
           D   +DL + K+  E      +N  NL +L L+N+ +     G F        +L  L +
Sbjct: 53  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLYL 107

Query: 257 SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT-GEIP 315
           S N  +  +P     +   L  L +  N +     S F  +  + ++++  N L    I 
Sbjct: 108 SKNQLK-ELP---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 316 EHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEG 375
                G   L Y+ +++ ++   +        +L  L L+GN        SL     L  
Sbjct: 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 435
           L L+ NS+S +    L N   L+ + +  N L   +P       ++Q++ + +NNIS   
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIG 279

Query: 436 PSCFHPL-------SIEHVHLSKNML-HGQLKRGTFFNYHSLVTLDLSYNR 478
            + F P        S   V L  N + + +++  TF   +    + L   +
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 51/293 (17%), Positives = 98/293 (33%), Gaps = 24/293 (8%)

Query: 98  TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKN 157
               +L + +N++T  I      +L ++  L L NN     IS        +L+  +   
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 158 NEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMK-MNGEF 216
           N    ++ + P        L  L +        +        + +  V+L      +   
Sbjct: 110 N----QLKELPEKMPKT--LQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 217 PTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGL 276
                +    L  + + + ++     +P      L  L +  N     +       L  L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNL 218

Query: 277 FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN--- 333
             L +S N++      S  N   L+ L + NN+L  ++P  LA     ++ + L NN   
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNIS 276

Query: 334 SLEGHMFSRNF---NLTNLKWLQLEGNHF-VGEIPQSLSKCF-VLEGLFLNNN 381
           ++  + F          +   + L  N     EI  S  +C  V   + L N 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 55/235 (23%), Positives = 88/235 (37%), Gaps = 42/235 (17%)

Query: 299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLE 355
            L+++  ++  L  ++P+ L     +   L L NN    ++   F    NL NL  L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 84

Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 415
            N      P + +    LE L+L+ N L   +P             MPK           
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE-----------KMPKT---------- 122

Query: 416 CQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLH-GQLKRGTFFNYHSLVTLD 473
                LQ L + +N I+    S F+ L  +  V L  N L    ++ G F     L  + 
Sbjct: 123 -----LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
           ++   +  +I   +     L+ L L  N +       L  LN L  L LS N++ 
Sbjct: 178 IADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 52/319 (16%), Positives = 101/319 (31%), Gaps = 48/319 (15%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYV 105
           P    L L         ++I D    +L +L  L + NN +    P   A +  L  LY+
Sbjct: 52  PDTALLDLQ----NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEIT 165
           S NQL       P     +++EL +  N     +        +++ V     N +     
Sbjct: 108 SKNQLK----ELPEKMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLK---- 158

Query: 166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNT 225
                                    I          L Y+ ++   +    P  L     
Sbjct: 159 ----------------------SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---P 192

Query: 226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNA 285
           +L  L L  + +       +     L  L +S N+    +        P L  L+++ N 
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNK 251

Query: 286 LDGSIPSSFGNMKFLQLLDVTNNQLT-----GEIPEHLAVGCVNLEYLALSNNSLEGHMF 340
           L   +P    + K++Q++ + NN ++        P        +   ++L +N ++    
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 341 SRN--FNLTNLKWLQLEGN 357
             +    +     +QL   
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 50/307 (16%), Positives = 103/307 (33%), Gaps = 62/307 (20%)

Query: 15  FPHFKSLELLDMECTRIAL--NTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS 72
           F + K+L  L +   +I+     +F       +  L+ L LS      N  K L   +  
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAF-----APLVKLERLYLSK-----NQLKELPEKM-- 119

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLT-GSISSSPLVHLTSIEELHLS 131
              LQEL ++ N++          +  + ++ + +N L    I +     +  +  + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 132 NNHFQ-IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGV 190
           + +   IP     L     L       N+I                     + +      
Sbjct: 180 DTNITTIPQG---LP--PSLTELHLDGNKIT-------------------KVDAAS---- 211

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP--IHSH 248
                L   ++L  + LS   ++       L N  +L  L L N+ L    ++P  +  H
Sbjct: 212 -----LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV---KVPGGLADH 262

Query: 249 KRLRLLDISNNNFR-----GHIPVEIGDVLPGLFSLNISMNALDGSI--PSSFGNMKFLQ 301
           K ++++ + NNN          P            +++  N +      PS+F  +    
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 302 LLDVTNN 308
            + + N 
Sbjct: 323 AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 17/176 (9%)

Query: 373 LEGLFLNNNSLSGM---IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
           L  +  ++  L  +   +P     L  LQ+     N +      +F  L  L  L + +N
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPDTALLD-LQN-----NKITEIKDGDFKNLKNLHTLILINN 86

Query: 430 NISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD 488
            IS   P  F PL  +E ++LSKN L  +L         +L  L +  N +        +
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFN 142

Query: 489 GLSQLSHLILGHNNLEGEV--PVQLCKLNQLQLLDLSNNNLHGPIPPCFDN-TTLH 541
           GL+Q+  + LG N L+           + +L  + +++ N+         + T LH
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (284), Expect = 1e-26
 Identities = 83/496 (16%), Positives = 155/496 (31%), Gaps = 74/496 (14%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
            +  L+ L LS + + +    +          L+ L + +N L+ ++      M SLR L
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLF----NQDLEYLDVSHNRLQ-NISC--CPMASLRHL 126

Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPL-FNHSRLKVFWAKNNEINA 162
            +S N            +LT +  L LS   F+    L+ L   H  L          + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 163 EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE 222
           +  ++ SL  PN  +  L         V     +     L+  ++     N +     L 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 223 N---NTNLESLFLVNDSLAGPFRLPIHS---HKRLRLLDISNNNFRGHIPVEIGD----V 272
                  L ++ L +        + +      + +  L+I N      I  E        
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
           L  L   ++       S  + +     + +  ++ +     I         +  +L  + 
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQ 362

Query: 333 NSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWL 391
           N        +    L  L+ L L+ N       ++  K                      
Sbjct: 363 NVFT-DSVFQGCSTLKRLQTLILQRNGL-----KNFFKVA-----------------LMT 399

Query: 392 GNLTRLQHIMMPKNHLEGPIPVEFCQL-DWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
            N++ L+ + +  N L        C   + + +L++S N ++GS+  C  P         
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--------- 450

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510
                             +  LDL  NR+  SI   V  L  L  L +  N L+      
Sbjct: 451 -----------------KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 511 LCKLNQLQLLDLSNNN 526
             +L  LQ + L +N 
Sbjct: 493 FDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 55/351 (15%), Positives = 114/351 (32%), Gaps = 21/351 (5%)

Query: 245 IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLD 304
           I     LR+L +S+N  R  +   +      L  L++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 305 VTNNQLTGEIPEHLAVGC-VNLEYLALSNNSLEGHMFSRNFNL-TNLKWLQLEGNHFVGE 362
           ++ N     +P     G    L +L LS             +L  +   L L   H  G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 363 IPQSLS--KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ--HIMMPKNHLEGPIPVEFCQL 418
             +SL      VL  +F  N+  S  +   +  L  LQ  +I +   + +  +       
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 419 DWLQILDISDNNISGSLPSCFHPLS------IEHVHLSKNMLHGQLKRGTFFNYH----S 468
               +L+++  +I  +               +E++++    +  ++ R  F        S
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 469 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
           L+   +       S        ++++  +L  ++      V     +    L+ + N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 529 GPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQHSP 579
             +          ++     +  K F     +           + +N  + 
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.8 bits (181), Expect = 5e-14
 Identities = 57/354 (16%), Positives = 118/354 (33%), Gaps = 21/354 (5%)

Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNN 260
           +L  + LSH ++       +   N +LE L + ++ L     +       LR LD+S N+
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND 132

Query: 261 FRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL-LDVTNNQLTGEIPEHLA 319
           F      +    L  L  L +S             ++    + LD+ +  + G   E L 
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 320 VGCVNLEYLALSNNSLEGHMFSRNFN------LTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
           +    + +L    NSL     + + N      L+N+K         +  + +      +L
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 374 EGLFLNNNSLSGMIPRWLGNL--TRLQHIMMPKNHLEGPIPVEF-----CQLDWLQILDI 426
                +  +      +         ++++ +    +   I  E        L  L I  +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 427 SDNNISGSLPSCFHPLSIEHV-HLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD 485
            +     S  + +   +  ++  LS +     +      +  S   L+ + N    S+  
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 486 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
               L +L  LIL  N L+            +  L+  + +L+      +D T 
Sbjct: 372 GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 60/363 (16%), Positives = 122/363 (33%), Gaps = 24/363 (6%)

Query: 10  LRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRG 69
            R         L L  +    ++ +    +  S  +P+   L L      +  S  ++  
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN-SLFSVQVNMS 216

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHL------T 123
           + +L HLQ   I  ND          +  +     ++        +    V L       
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 124 SIEELHLSNNHFQIPISLEPL-FNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSL 182
            +E L++ N      I  E   ++ + LK    ++ +       S       F    + +
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-VFLFSKEALYSVFAEMNIKM 335

Query: 183 SSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVN---DSLAG 239
            S      I            +++ +      +           L++L L      +   
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 240 PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF 299
              +   +   L  LD+S N+   H           +  LN+S N L GS+         
Sbjct: 395 VALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK-- 451

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEG 356
           +++LD+ NN++   IP+ +      L+ L +++N   S+   +F     LT+L+++ L  
Sbjct: 452 VKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHD 506

Query: 357 NHF 359
           N +
Sbjct: 507 NPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
             +  SLE LD+     +LN+           S+  L+LS + L  +  + L        
Sbjct: 399 TKNMSSLETLDVSLN--SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------PP 450

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
            ++ L ++NN +  S+P  + ++ +L+ L V+SNQL  S+       LTS++ + L +N 
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

Query: 135 FQ 136
           + 
Sbjct: 509 WD 510

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (274), Expect = 1e-25
 Identities = 91/496 (18%), Positives = 164/496 (33%), Gaps = 100/496 (20%)

Query: 33  LNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPW 92
              +  ++          L L++  L +              HL+ L    N L   LP 
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPE--------LPPHLESLVASCNSLT-ELPE 108

Query: 93  CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKV 152
              ++ SL +   +   L+             +E L +SNN  +    L  L N S LK+
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKI 157

Query: 153 FWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKM 212
               NN +                                P        LE++   + ++
Sbjct: 158 IDVDNNSLKK-----------------------------LPDLPPS---LEFIAAGNNQL 185

Query: 213 NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDV 272
             E P   L+N   L +++  N+SL     LP+     L  +   NN        E+ + 
Sbjct: 186 E-ELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAGNNIL--EELPELQN- 235

Query: 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
           LP L ++    N L  ++P    +   L+ L+V +N LT ++PE       +L +L +S 
Sbjct: 236 LPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSE 286

Query: 333 NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLG 392
           N         +    NL +L    N     +         LE L ++NN L   +P    
Sbjct: 287 NIFS----GLSELPPNLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPP 337

Query: 393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN 452
            L RL   +   NHL   +P     L   + L +  N +    P     +    ++    
Sbjct: 338 RLERL---IASFNHLAE-VPELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLC 512
            +    +        +L  L +  N L     ++ D    +  L +    +         
Sbjct: 390 EVPELPQ--------NLKQLHVETNPL----REFPDIPESVEDLRMNSERVVDPYEFAHE 437

Query: 513 KLNQLQLLDLSNNNLH 528
             ++L+     +++ H
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 5e-22
 Identities = 96/501 (19%), Positives = 171/501 (34%), Gaps = 98/501 (19%)

Query: 71  CSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSS------------P 118
            S   LQE   ++++L   +P    N+ S    Y + ++   +                 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 119 LVHLTSIEELHLSNNHFQ-IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL 177
                   EL L+N     +P     L     L        E+        SL   N  L
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNL 123

Query: 178 SRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL 237
             LS                    LEY+ +S+ ++  + P   L+N++ L+ + + N+SL
Sbjct: 124 KALSDLP---------------PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSL 165

Query: 238 AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNM 297
                LP      L  +   NN     +P E+ + LP L ++    N+L   +P    + 
Sbjct: 166 KKLPDLP----PSLEFIAAGNNQLE-ELP-ELQN-LPFLTAIYADNNSLK-KLPDLPLS- 216

Query: 298 KFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN 357
             L+ +   NN L  E+PE        L  +   NN L+    +      +L+ L +  N
Sbjct: 217 --LESIVAGNNILE-ELPELQ--NLPFLTTIYADNNLLK----TLPDLPPSLEALNVRDN 267

Query: 358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 417
           +   ++P+       L  L ++ N  SG +     NL  L       N +          
Sbjct: 268 YLT-DLPELPQS---LTFLDVSENIFSG-LSELPPNLYYLN---ASSNEIRSLCD----L 315

Query: 418 LDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLH---GQLKRGTFFNYHSLVTLDL 474
              L+ L++S+N +   LP+      +E +  S N L       +        +L  L +
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPP--RLERLIASFNHLAEVPELPQ--------NLKQLHV 364

Query: 475 SYNRL---------------NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 519
            YN L               N  +++  +    L  L +  N L  E P        ++ 
Sbjct: 365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD---IPESVED 420

Query: 520 LDLSNNNLHGPIPPCFDNTTL 540
           L +++  +  P     + T  
Sbjct: 421 LRMNSERVVDPYEFAHETTDK 441

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (269), Expect = 4e-25
 Identities = 77/381 (20%), Positives = 134/381 (35%), Gaps = 46/381 (12%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLC-SLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
            +  L++L +   T G     ++       L  L  L +  N            + +L +
Sbjct: 52  RLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107

Query: 103 LYVSSNQLTGS-ISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNH-SRLKVFWAKNNEI 160
           L ++   L G+ +S +    LTS+E L L +N+ +  I     F +  R  V     N++
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKV 166

Query: 161 ---------NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMK 211
                    N +      L   +  L    ++  +               +  +DLS   
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITL--QDMNEYWLGWEKCGNPF-KNTSITTLDLSGNG 223

Query: 212 MNGEFPTWL--LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEI 269
                          T ++SL L N            S       D  N  F+G      
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSN------SYNMGSSFGHTNFKDPDNFTFKGLEA--- 274

Query: 270 GDVLPGLFSLNISMNALDGSIPS-SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL 328
                G+ + ++S + +  ++    F +   L+ L +  N++  +I ++   G  +L  L
Sbjct: 275 ----SGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 329 ALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLS 384
            LS N   S++  MF    NL  L+ L L  NH    +  QS      L+ L L+ N L 
Sbjct: 329 NLSQNFLGSIDSRMFE---NLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK 384

Query: 385 GMIPRWLGNLTRLQHIMMPKN 405
            +       LT LQ I +  N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (268), Expect = 6e-25
 Identities = 67/320 (20%), Positives = 110/320 (34%), Gaps = 41/320 (12%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPS-SFGNMKFLQLLDVTNNQLTG 312
           +D+S N+    +       L  L  L +        I + +F  +  L +L +  NQ   
Sbjct: 35  VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92

Query: 313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF--NLTNLKWLQLEGNHFV----GEIPQS 366
           ++      G  NLE L L+  +L+G + S NF   LT+L+ L L  N+           +
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 367 LSKCFVLEGLFLNNN-----------SLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 415
           + +      L L  N           +  G     L  L+ +    M +  L        
Sbjct: 153 MRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNP 208

Query: 416 CQLDWLQILDISDNNISGSLPSCFHPL----SIEHVHLSKNMLHGQ---------LKRGT 462
            +   +  LD+S N    S+   F        I+ + LS +   G              T
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 463 FFN--YHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 519
           F       + T DLS +++  ++   V    + L  L L  N +          L  L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 520 LDLSNNNLHGPIPPCFDNTT 539
           L+LS N L       F+N  
Sbjct: 328 LNLSQNFLGSIDSRMFENLD 347

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 1e-23
 Identities = 67/358 (18%), Positives = 128/358 (35%), Gaps = 59/358 (16%)

Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
            ++  + L  +S+A          + L+ L +        I       L  L  L +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 285 ALDGSIPSS-FGNMKFLQLLDVTNNQLTG-EIPEHLAVGCVNLEYLALSNNSLEGHMFSR 342
                + +  F  +  L++L +T   L G  +  +      +LE L L +N+++    + 
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 343 NF-NLTNLKWLQLEGNH----------------------------------FVGEIPQSL 367
            F N+     L L  N                                      E   + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 368 SKCFVLEGLFLNNNSLSGMIPRW---LGNLTRLQHIMM----------PKNHLEGPIPVE 414
            K   +  L L+ N     + +        T++Q +++             + + P    
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 415 FCQLDW--LQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVT 471
           F  L+   ++  D+S + I   L S F   + +E + L++N ++ ++    F+    L+ 
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327

Query: 472 LDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQL-CKLNQLQLLDLSNNNL 527
           L+LS N L GSI   + + L +L  L L +N++   +  Q    L  L+ L L  N L
Sbjct: 328 LNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 79/439 (17%), Positives = 140/439 (31%), Gaps = 70/439 (15%)

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
            H+  + +  N +        + +  L+ L V        I ++    L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 134 HFQIPISLEP-LFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVI 191
            F     LE   FN  + L+V                        L    LS  +     
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQC-----------------NLDGAVLSGNF----- 124

Query: 192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG--PFRLPIHSHK 249
           F         LE + L    +    P     N      L L  + +       L     K
Sbjct: 125 FKPL----TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
              LL +S+                     +++   L      +      +  LD++ N 
Sbjct: 181 HFTLLRLSSITL-----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 310 LTGEIPEHL--AVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSL 367
               + +    A+    ++ L LSN+   G  F          +   +   F G     +
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------NFKDPDNFTFKGLEASGV 277

Query: 368 SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 427
                     L+ + +  ++     + T L+ + + +N +       F  L  L  L++S
Sbjct: 278 KT------CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 428 DNNISGSLPSC-FHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD 485
            N +  S+ S  F  L  +E + LS N +   L   +F    +L  L L  N+L  S+ D
Sbjct: 332 QNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPD 388

Query: 486 WV-DGLSQLSHLILGHNNL 503
            + D L+ L  + L  N  
Sbjct: 389 GIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 51/268 (19%), Positives = 101/268 (37%), Gaps = 33/268 (12%)

Query: 289 SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLT 347
            +P    ++ ++ L   + N +  E+ E       +L++L +   +    + +  F  L+
Sbjct: 24  QVPELPAHVNYVDL---SLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 348 NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL-SGMIPR-WLGNLTRLQHIMMPKN 405
           +L  L+L+ N F+     + +    LE L L   +L   ++   +   LT L+ +++  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 406 HLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPLSIEHV---HLSKNMLH------ 455
           +++   P   F  +    +LD++ N +             +H     LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 456 -GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLI-------------LGHN 501
            G  K G  F   S+ TLDLS N    S++         + +               GH 
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 502 NLEGEVPVQLCKL--NQLQLLDLSNNNL 527
           N +         L  + ++  DLS + +
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKI 287

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 71/383 (18%), Positives = 128/383 (33%), Gaps = 60/383 (15%)

Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH-KRLRLLDISNN 259
            + YVDLS   +  E          +L+ L +   +     R         L +L +  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 260 NFRGHIPVEIGDVLPGLFSLNISMNALDGSI--PSSFGNMKFLQLLDVTNNQLTGEIPEH 317
            F   +     + L  L  L ++   LDG++   + F  +  L++L + +N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 318 LAVGCVNLEYLALSNN---SLEGHMFS-------RNFNLTNLKWLQLEGNHFVGEIPQSL 367
             +       L L+ N   S+                 L+++    +       E   + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 368 SKCFVLEGLFLNNNSLSGMIPRW---LGNLTRLQHIMMPKNHLEGP-------------- 410
            K   +  L L+ N     + +        T++Q +++  ++  G               
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 411 ---------------------IPVE-FCQLDWLQILDISDNNISGSLPS-CFHPL-SIEH 446
                                +    F     L+ L ++ N I+  +    F  L  +  
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327

Query: 447 VHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEG 505
           ++LS+N L G +    F N   L  LDLSYN +  ++ D    GL  L  L L  N L+ 
Sbjct: 328 LNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKS 385

Query: 506 EVPVQLCKLNQLQLLDLSNNNLH 528
                  +L  LQ + L  N   
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGL 70
           F HF  LE L        L  + +  I +     +  L  L+LS + LG+  S++ +   
Sbjct: 295 FSHFTDLEQLT-------LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-- 345

Query: 71  CSLVHLQELYIYNNDLRGSLPWCM-ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
             L  L+ L +  N +R +L       + +L+ L + +NQL  S+       LTS++++ 
Sbjct: 346 --LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIW 401

Query: 130 LSNNHFQ 136
           L  N + 
Sbjct: 402 LHTNPWD 408

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (265), Expect = 1e-24
 Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 22/239 (9%)

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEG 356
            + L++  N +   I         +LE L L  N    +E   F+    L +L  L+L  
Sbjct: 77  TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN---GLASLNTLELFD 132

Query: 357 NHFVGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK-NHLEGPI 411
           N  +  IP    + LSK   L  L+L NN +  +       +  L  + + +   LE  I
Sbjct: 133 NW-LTVIPSGAFEYLSK---LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-I 187

Query: 412 PVE-FCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLV 470
               F  L  L+ L++   NI   +P+    + +E + +S N    +++ G+F    SL 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLK 245

Query: 471 TLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            L +  ++++  I     DGL+ L  L L HNNL          L  L  L L +N  +
Sbjct: 246 KLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.1 bits (247), Expect = 3e-22
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 17/229 (7%)

Query: 306 TNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGE 362
           T   L+ E+P+ +     N  YL L  N    ++   F    +L +L+ LQL  N     
Sbjct: 62  TRRGLS-EVPQGIPS---NTRYLNLMENNIQMIQADTFR---HLHHLEVLQLGRNSIRQI 114

Query: 363 IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWL 421
              + +    L  L L +N L+ +       L++L+ + +  N +E  IP   F ++  L
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSL 173

Query: 422 QILDISDNNISGSLPS-CFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
             LD+ +      +    F  L ++++++L    +              L  L++S N  
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF 230

Query: 480 NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
                    GLS L  L + ++ +          L  L  L+L++NNL 
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 8/192 (4%)

Query: 348 NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
               +         E+PQ +        L L  N++  +      +L  L+ + + +N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 408 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNY 466
                  F  L  L  L++ DN ++      F  L  +  + L  N +   +    F   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 467 HSLVTLDLS-YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 525
            SL+ LDL    +L        +GL  L +L LG  N++ ++P  L  L  L+ L++S N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 526 NLHGPIPPCFDN 537
           +     P  F  
Sbjct: 229 HFPEIRPGSFHG 240

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 57/236 (24%), Positives = 94/236 (39%), Gaps = 18/236 (7%)

Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL----AGPFRLPIHSHKRLRLLDI 256
           +  Y++L    +          +  +LE L L  +S+     G F         L  L++
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLEL 130

Query: 257 SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPS-SFGNMKFLQLLDVTN-NQLTGEI 314
            +N     IP    + L  L  L +  N +  SIPS +F  +  L  LD+    +L   I
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE-YI 187

Query: 315 PEHLAVGCVNLEYLALSNNSLEG-HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
            E    G  NL+YL L   +++     +    L  L+ L++ GNHF    P S      L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
           + L++ N+ +S +       L  L  + +  N+L       F  L +L  L +  N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 7e-14
 Identities = 54/291 (18%), Positives = 94/291 (32%), Gaps = 64/291 (21%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYV 105
            + +YL+L ++ +      I       L HL+ L +  N +R         + SL  L +
Sbjct: 75  SNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEIT 165
             N LT  I S    +L+ + EL L NN  +  I          L               
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLD----------- 177

Query: 166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN- 224
               L     +L  +S  +                +L+Y++L                N 
Sbjct: 178 ----LGELK-KLEYISEGA-----------FEGLFNLKYLNLGM-------------CNI 208

Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
            ++ +L                    L  L++S N+F   I       L  L  L +  +
Sbjct: 209 KDMPNL---------------TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS 252

Query: 285 ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
            +     ++F  +  L  L++ +N L+  +P  L      L  L L +N  
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 49/258 (18%)

Query: 10  LRGQGFPHFKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKI 65
           ++   F H   LE+L        L  + ++ I       + SL  L L D+ L    + I
Sbjct: 90  IQADTFRHLHHLEVLQ-------LGRNSIRQIEVGAFNGLASLNTLELFDNWL----TVI 138

Query: 66  LDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSS-NQLTGSISSSPLVHLTS 124
                  L  L+EL++ NN +     +    + SL  L +    +L   IS      L +
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFN 197

Query: 125 IEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSS 184
           ++ L+L   + +    +  L     L+      N                          
Sbjct: 198 LKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPE---------------------- 232

Query: 185 GYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP 244
                 I P   +    L+ + + + +++        +   +L  L L +++L+      
Sbjct: 233 ------IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 245 IHSHKRLRLLDISNNNFR 262
               + L  L + +N + 
Sbjct: 286 FTPLRYLVELHLHHNPWN 303

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 2e-24
 Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 35/280 (12%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT-G 312
           +  ++      +P     +      L +  N L       F  +  L  L +++N L+  
Sbjct: 12  IRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQSL-SKC 370
                   G  +L+YL LS N +     S NF  L  L+ L  + ++       S+    
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN-HLEGPIPVEFCQLDWLQILDISDN 429
             L  L +++             L+ L+ + M  N   E  +P  F +L  L  LD+S  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 430 NISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG 489
            +                         QL    F +  SL  L++S+N      +     
Sbjct: 186 QLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 490 LSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNNLH 528
           L+ L  L    N++      +L    + L  L+L+ N+  
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 6e-19
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 7/182 (3%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLD 419
            +P  +        L L +N L  +       LT+L  + +  N L   G          
Sbjct: 21  SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 420 WLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNR 478
            L+ LD+S N +  ++ S F  L  +EH+    + L    +   F +  +L+ LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 479 LNGSISDWVDGLSQLSHLILGHNN-LEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
              + +   +GLS L  L +  N+  E  +P    +L  L  LDLS   L    P  F++
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 538 TT 539
            +
Sbjct: 198 LS 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 8e-15
 Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 191 IFPKFLYHQHDLEYVDLSHMKMN-GEFPTWLLENNTNLESLFLVN---DSLAGPFRLPIH 246
           +          L  + LS   ++     +      T+L+ L L      +++  F     
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---- 98

Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
             ++L  LD  ++N +      +   L  L  L+IS      +    F  +  L++L + 
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEI 363
            N         +     NL +L LS      L    F+   +L++L+ L +  N+F    
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLD 215

Query: 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL-TRLQHIMMPKN 405
                    L+ L  + N +     + L +  + L  + + +N
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 57/290 (19%), Positives = 105/290 (36%), Gaps = 63/290 (21%)

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLT-GSISSSPLVHLTSIEELHLSNN 133
               L + +N L+         +T L  L +SSN L+     S      TS++ L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 134 HFQIPISLEPLFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIF 192
                 ++   F    +L+    +++                  L ++S  S        
Sbjct: 89  GVI---TMSSNFLGLEQLEHLDFQHS-----------------NLKQMSEFS-------- 120

Query: 193 PKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLR 252
                   +L Y+D+SH               T+    F  N    G   L       L 
Sbjct: 121 --VFLSLRNLIYLDISH---------------THTRVAF--NGIFNG---LS-----SLE 153

Query: 253 LLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG 312
           +L ++ N+F+ +   +I   L  L  L++S   L+   P++F ++  LQ+L++++N    
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF- 212

Query: 313 EIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHF 359
            +         +L+ L  S N   + +          ++L +L L  N F
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH--FPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 48/292 (16%), Positives = 81/292 (27%), Gaps = 61/292 (20%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDL--RGSLPWCMANMTSLRIL 103
            S   L L  + L      +       L  L +L + +N L  +G         TSL+ L
Sbjct: 28  SSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
            +S N +     SS  + L  +E L   +++ +         +   L             
Sbjct: 84  DLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD--------- 132

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLEN 223
                        +S             F         LE + ++       F   +   
Sbjct: 133 -------------ISHTHTRV------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 224 NTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM 283
             NL  L L                        S       +     + L  L  LN+S 
Sbjct: 174 LRNLTFLDL------------------------SQCQLE-QLSPTAFNSLSSLQVLNMSH 208

Query: 284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
           N         +  +  LQ+LD + N +     + L     +L +L L+ N  
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 26/231 (11%)

Query: 10  LRGQGFPHFKSLELLDMECTRI-ALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDR 68
              Q      SL+ LD+    +  ++++F       +  L++L    S L     ++ + 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNF-----LGLEQLEHLDFQHSNL----KQMSEF 119

Query: 69  GL-CSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEE 127
            +  SL +L  L I +   R +       ++SL +L ++ N    +        L ++  
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 128 LHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYG 187
           L LS    +  +S     + S L+V    +N      +           L  L  S  + 
Sbjct: 180 LDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFF---SLDTFPYKCLNSLQVLDYSLNHI 235

Query: 188 DGVIFPKFLYHQHDLEYVDLSHMKMN--------GEFPTWLLENNTNLESL 230
                 +  +    L +++L+    N          F  W+ +    L  +
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIKDQRQLLVEV 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 2e-24
 Identities = 60/297 (20%), Positives = 112/297 (37%), Gaps = 32/297 (10%)

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
           LR++  S+   +  +P EI    P    L++  N +       F  ++ L  L + NN++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 311 TGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSL 367
           + +I E        L+ L +S N    +  ++ S      +L  L++  N          
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVF 143

Query: 368 SKCFVLEGLFLNNNSL--SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425
           S    +  + +  N L  SG  P     L +L ++ + +  L G IP +    + L  L 
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL--PETLNELH 199

Query: 426 ISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS 484
           +  N I             +  + L  N +   ++ G+     +L  L L  N+L+  + 
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 485 DWVDGLSQLSHLILGHNNLEGEVPVQ-------LCKLNQLQLLDLSNNNL-HGPIPP 533
             +  L  L  + L  NN+  +V V          K      + L NN + +  + P
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 54/267 (20%), Positives = 100/267 (37%), Gaps = 18/267 (6%)

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
            +   +L +L LVN+ ++          ++L+ L IS N+    IP    ++   L  L 
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNLPSSLVELR 129

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF 340
           I  N +       F  ++ +  +++  N L     E  A   + L YL +S   L   + 
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP 188

Query: 341 SRNFNLTNLKWLQLEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQH 399
                   L  L L+ N     I    L +   L  L L +N +  +    L  L  L+ 
Sbjct: 189 KDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 400 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-------SIEHVHLSKN 452
           + +  N L   +P     L  LQ++ +  NNI+    + F P+           + L  N
Sbjct: 246 LHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 453 ML-HGQLKRGTFFNYHSLVTLDLSYNR 478
            + + +++  TF      + +     +
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 8e-20
 Identities = 50/263 (19%), Positives = 100/263 (38%), Gaps = 20/263 (7%)

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
           + L  L + NN     I  +    L  L  L IS N L    P+   +   L  L + +N
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDN 133

Query: 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN-FNLTNLKWLQLEGNHFVGEIPQSL 367
           ++  ++P+ +  G  N+  + +  N LE   F    F+   L +L++        IP+ L
Sbjct: 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191

Query: 368 SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 427
            +   L  L L++N +  +    L   ++L  + +  N +          L  L+ L + 
Sbjct: 192 PET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 428 DNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTF------FNYHSLVTLDLSYNRL- 479
           +N +S  +P+    L  ++ V+L  N +  ++    F              + L  N + 
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 480 NGSISDWV-DGLSQLSHLILGHN 501
              +       ++    +  G+ 
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 58/320 (18%), Positives = 106/320 (33%), Gaps = 51/320 (15%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYV 105
           P    L L ++ +    S++       L HL  L + NN +        + +  L+ LY+
Sbjct: 54  PDTTLLDLQNNDI----SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEIT 165
           S N L       P    +S+ EL + +N  +  +          +       N       
Sbjct: 110 SKNHLV----EIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGN------- 157

Query: 166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNT 225
                      L       G  DG+           L Y+ +S  K+    P  L     
Sbjct: 158 ----------PLENSGFEPGAFDGL----------KLNYLRISEAKLT-GIPKDLP---E 193

Query: 226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNA 285
            L  L L ++ +       +  + +L  L + +N  R  I       LP L  L++  N 
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNK 252

Query: 286 LDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE------HLAVGCVNLEYLALSNNSLEGHM 339
           L   +P+   ++K LQ++ +  N +T ++           V       ++L NN +    
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 340 FSRN--FNLTNLKWLQLEGN 357
                   +T+   +Q    
Sbjct: 311 VQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 53/343 (15%), Positives = 104/343 (30%), Gaps = 58/343 (16%)

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
           HL+ +   +  L+ ++P  ++      +L + +N ++  +       L  +  L L NN 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 135 FQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPK 194
               I  +      +L+  +   N +         +                        
Sbjct: 90  ISK-IHEKAFSPLRKLQKLYISKNHLV-------EIPPNLPS------------------ 123

Query: 195 FLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA-GPFRLPIHSHKRLRL 253
                  L  + +   ++  + P  +     N+  + +  + L    F        +L  
Sbjct: 124 ------SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 176

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPS-SFGNMKFLQLLDVTNNQLTG 312
           L IS       IP    D+   L  L++  N +  +I          L  L + +NQ+  
Sbjct: 177 LRISEAKLT-GIPK---DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR- 230

Query: 313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQS----- 366
            I          L  L L NN L          +L  L+ + L  N+   ++  +     
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPV 287

Query: 367 --LSKCFVLEGLFLNNNSLS--GMIPRWLGNLTRLQHIMMPKN 405
               K     G+ L NN +    + P     +T    I     
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 46/323 (14%), Positives = 91/323 (28%), Gaps = 70/323 (21%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
           F   + L  L +   +I   +   +     +  L+ L +S      N    +   L    
Sbjct: 74  FKGLQHLYALVLVNNKI---SKIHEKAFSPLRKLQKLYISK-----NHLVEIPPNL--PS 123

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
            L EL I++N +R       + + ++  + +  N L  S           +  L +S   
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 135 F-QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFP 193
              IP  L        L      +N+I        ++   +                   
Sbjct: 184 LTGIPKDL-----PETLNELHLDHNKIQ-------AIELEDLL----------------- 214

Query: 194 KFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP--IHSHKRL 251
                   L  + L H ++        L     L  L L N+ L+   R+P  +   K L
Sbjct: 215 ----RYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLL 266

Query: 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT 311
           +++ +  NN                    + +N              +   + + NN + 
Sbjct: 267 QVVYLHTNNIT-----------------KVGVNDFCP--VGFGVKRAYYNGISLFNNPVP 307

Query: 312 -GEIPEHLAVGCVNLEYLALSNN 333
             E+         +   +   N 
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNY 330

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (256), Expect = 2e-23
 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 22/239 (9%)

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEG 356
            +LL++  NQ+   I  +      +LE L LS N   ++E   F+    L NL  L+L  
Sbjct: 66  TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN---GLANLNTLELFD 121

Query: 357 NHFVGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK-NHLEGPI 411
           N  +  IP      LSK   L+ L+L NN +  +       +  L+ + + +   L   I
Sbjct: 122 NR-LTTIPNGAFVYLSK---LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-I 176

Query: 412 PVE-FCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLV 470
               F  L  L+ L+++  N+   +P+    + ++ + LS N L   ++ G+F     L 
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQ 234

Query: 471 TLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            L +  +++   I     D L  L  + L HNNL          L+ L+ + L +N  +
Sbjct: 235 KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (252), Expect = 6e-23
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 15/228 (6%)

Query: 306 TNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGE 362
               L  E+P+ ++    N   L L  N    ++ + F    +L +L+ LQL  NH    
Sbjct: 51  VRKNLR-EVPDGIST---NTRLLNLHENQIQIIKVNSFK---HLRHLEILQLSRNHIRTI 103

Query: 363 IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 422
              + +    L  L L +N L+ +       L++L+ + +  N +E      F ++  L+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 423 ILDISDNNISGSLPS-CFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
            LD+ +      +    F  L ++ +++L+   L    +         L  LDLS N L+
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLS 220

Query: 481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
                   GL  L  L +  + ++         L  L  ++L++NNL 
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 7/178 (3%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
           E+P  +S       L L+ N +  +      +L  L+ + + +NH+       F  L  L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 422 QILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS-YNRL 479
             L++ DN ++      F  L  ++ + L  N +   +    F    SL  LDL    RL
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 480 NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
           +       +GLS L +L L   NL  E+P  L  L +L  LDLS N+L    P  F  
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 15/215 (6%)

Query: 221 LENNTNLESLFLVNDSL----AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGL 276
            ++  +LE L L  + +     G F         L  L++ +N     IP      L  L
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTLELFDNRLT-TIPNGAFVYLSKL 138

Query: 277 FSLNISMNALDGSIPSSFGNMKFLQLLDVT-NNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
             L +  N ++     +F  +  L+ LD+    +L+  I E    G  NL YL L+  +L
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNL 197

Query: 336 EG-HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
                 +    L  L  L L GNH     P S      L+ L++  + +  +      NL
Sbjct: 198 REIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
             L  I +  N+L       F  L  L+ + +  N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 55/262 (20%), Positives = 98/262 (37%), Gaps = 36/262 (13%)

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH 134
           + + L ++ N ++        ++  L IL +S N +  +I       L ++  L L +N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 135 FQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPK 194
               I        S+LK  W +NN I        S+ +  F      + S          
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPIE-------SIPSYAFN----RIPS---------- 161

Query: 195 FLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH-KRLRL 253
                  L  +DL  +K          E  +NL  L L   +L     +P  +   +L  
Sbjct: 162 -------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDE 211

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
           LD+S N+    I       L  L  L +  + +     ++F N++ L  +++ +N LT  
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269

Query: 314 IPEHLAVGCVNLEYLALSNNSL 335
           +P  L     +LE + L +N  
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 42/245 (17%), Positives = 84/245 (34%), Gaps = 20/245 (8%)

Query: 24  LDMECTRIALNTSFLQIISES----MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQEL 79
           +      + L+ + +QII  +    +  L+ L LS + +      I       L +L  L
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTL 117

Query: 80  YIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPI 139
            +++N L          ++ L+ L++ +N +  SI S     + S+  L L        I
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 140 SLEPLFNHSRLKVFWAKNNEINA--EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLY 197
           S       S L+        +     +T    L      LS   LS+      I P    
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD--ELDLSGNHLSA------IRPGSFQ 228

Query: 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDIS 257
               L+ + +   ++         +N  +L  + L +++L             L  + + 
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 258 NNNFR 262
           +N + 
Sbjct: 288 HNPWN 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.8 bits (249), Expect = 6e-23
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 22/287 (7%)

Query: 255 DISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEI 314
             S+ +    IP  +      + SL++S N +     S       LQ L +T+N +   I
Sbjct: 37  KGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TI 91

Query: 315 PEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSL-SKC 370
            E       +LE+L LS N   +L    F     L++L +L L GN +      SL S  
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 371 FVLEGLFLNNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 429
             L+ L + N      I  +    LT L+ + +  + L+   P     +  +  L +   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 430 NISGSLPSCFHPL-SIEHVHLSKNMLHG----QLKRGTFF---NYHSLVTLDLSYNRLNG 481
                L        S+E + L    L      +L  G         +   + ++   L  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 482 SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            +   ++ +S L  L    N L+        +L  LQ + L  N   
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 4e-19
 Identities = 43/246 (17%), Positives = 93/246 (37%), Gaps = 15/246 (6%)

Query: 246 HSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSS-FGNMKFLQLLD 304
                L+ L +++N     I  +    L  L  L++S N L  ++ SS F  +  L  L+
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130

Query: 305 VTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEI 363
           +  N         L      L+ L + N      +  ++F  LT L+ L+++ +      
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE--------F 415
           P+SL     +  L L+      ++  ++   + ++ + +    L+     E         
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 416 CQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474
            +    + + I+D ++   +    + +  +  +  S+N L   +  G F    SL  + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 475 SYNRLN 480
             N  +
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 56/325 (17%), Positives = 107/325 (32%), Gaps = 74/325 (22%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYV 105
            ++K L LS++ +    + I +  L   V+LQ L + +N +        +++ SL  L +
Sbjct: 52  EAVKSLDLSNNRI----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEIT 165
           S N L+ ++SSS    L+S+  L+L  N ++  +    LF+H          N       
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGN------- 158

Query: 166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNT 225
                       +++             K       LE +++    +   +    L++  
Sbjct: 159 --------MDTFTKIQ-----------RKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQ 198

Query: 226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNA 285
           N+  L L                                +     DV   +  L +    
Sbjct: 199 NVSHLIL------------------------HMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 286 LDG----SIPS----SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---S 334
           LD      + +    S       + + +T+  L       L      L  L  S N   S
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKS 291

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHF 359
           +   +F     LT+L+ + L  N +
Sbjct: 292 VPDGIFD---RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 30/171 (17%)

Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNI 431
           ++ L L+NN ++ +    L     LQ +++  N +   I  + F  L  L+ LD+S N +
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYL 112

Query: 432 SGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD--WVDG 489
           S +L S                         F    SL  L+L  N    ++ +      
Sbjct: 113 S-NLSS-----------------------SWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147

Query: 490 LSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
           L++L  L +G+ +   ++  +    L  L+ L++  ++L    P    +  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 9/126 (7%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRG----L 70
               +++  L +   +       L+I  +   S++ L L D+ L T     L  G    L
Sbjct: 194 LKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 71  CSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHL 130
                 + + I +  L   +   +  ++ L  L  S NQL  S+       LTS++++ L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308

Query: 131 SNNHFQ 136
             N + 
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 54/282 (19%), Positives = 92/282 (32%), Gaps = 48/282 (17%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGL 70
                +L+ L        L ++ +  I E    S+ SL++L LS + L   SS       
Sbjct: 72  LQRCVNLQALV-------LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK--- 121

Query: 71  CSLVHLQELYIYNNDLRGSLPWCM-ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
             L  L  L +  N  +      + +++T L+IL V +      I       LT +EEL 
Sbjct: 122 -PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 130 LSNNHFQIPISLEP-LFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYG 187
           +  +  Q   S EP        +        +                      L   + 
Sbjct: 181 IDASDLQ---SYEPKSLKSIQNVSHLILHMKQHI-------------------LLLEIFV 218

Query: 188 DGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS 247
           D     + L    +L   DL     + E  T    +     +   V  +    F++    
Sbjct: 219 DVTSSVECL----ELRDTDLDTFHFS-ELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 248 HK--RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALD 287
           ++   L  L+ S N  +  +P  I D L  L  + +  N  D
Sbjct: 274 NQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 50/237 (21%), Positives = 84/237 (35%), Gaps = 16/237 (6%)

Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
            ++            +  +PV I         + +  N +     +SF   + L +L + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNN----SLEGHMFSRNFNLTNLKWLQLEGNHFVGE 362
           +N L   I      G   LE L LS+N    S++   F     L  L  L L+      E
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-E 119

Query: 363 IPQ-SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
           +          L+ L+L +N+L  +      +L  L H+ +  N +       F  L  L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 422 QILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
             L +  N ++   P  F  L  +  ++L  N L   L         +L  L L+ N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 56/246 (22%), Positives = 87/246 (35%), Gaps = 38/246 (15%)

Query: 289 SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFN 345
           ++P         Q + +  N+++  +P      C NL  L L +N    ++   F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 346 LTNLKWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
           L  L+ L L  N  +  +  +       L  L L+   L  + P     L  LQ++ +  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 405 NHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463
           N L+  +P + F  L  L  L +  N IS                         +    F
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRIS------------------------SVPERAF 173

Query: 464 FNYHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL 522
              HSL  L L  NR+   +       L +L  L L  NNL       L  L  LQ L L
Sbjct: 174 RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 523 SNNNLH 528
           ++N   
Sbjct: 233 NDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 7/181 (3%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
            +P  +      + +FL+ N +S +          L  + +  N L       F  L  L
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 422 QILDISDNNISGSLPS-CFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
           + LD+SDN    S+    FH L  +  +HL +  L  +L  G F    +L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 480 NGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP-CFDNT 538
                D    L  L+HL L  N +          L+ L  L L  N +   + P  F + 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDL 200

Query: 539 T 539
            
Sbjct: 201 G 201

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 45/249 (18%), Positives = 79/249 (31%), Gaps = 49/249 (19%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYV 105
            + + + L     G   S +      +  +L  L++++N L          +  L  L +
Sbjct: 32  AASQRIFLH----GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEP-LFNH-SRLKVFWAKNNEINAE 163
           S N    S+  +    L  +  LHL     Q    L P LF   + L+  + ++N     
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDN----- 139

Query: 164 ITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLEN 223
                        L  L                    +L ++ L   +++   P      
Sbjct: 140 ------------ALQALP-----------DDTFRDLGNLTHLFLHGNRIS-SVPERAFRG 175

Query: 224 NTNLESLFLVNDSL----AGPFR-LPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFS 278
             +L+ L L  + +       FR L      RL  L +  NN    +P E    L  L  
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLS-ALPTEALAPLRALQY 229

Query: 279 LNISMNALD 287
           L ++ N   
Sbjct: 230 LRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 45  MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILY 104
           + +L+YL L D+ L      + D     L +L  L+++ N +          + SL  L 
Sbjct: 128 LAALQYLYLQDNAL----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 105 VSSNQLTGSISSSPLVHLTSIEELHLSNN 133
           +  N++   +       L  +  L+L  N
Sbjct: 184 LHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 77/431 (17%), Positives = 152/431 (35%), Gaps = 60/431 (13%)

Query: 27  ECTRIALNTSFLQIISES-MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND 85
                A        ISE  + +L  L   +S++   +      G+  L  L +L   +N+
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT------GIEKLTGLTKLICTSNN 75

Query: 86  LRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLF 145
           +  +L   ++  T+L  L   SN+LT    +  +  LT +  L+   N     ++   + 
Sbjct: 76  IT-TLD--LSQNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNK----LTKLDVS 124

Query: 146 NHSRLKVFWAKNNEINA-EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEY 204
            +  L       N +   +++ +  LT            +           +  Q  L  
Sbjct: 125 QNPLLTYLNCARNTLTEIDVSHNTQLT--ELDCHLNKKIT--------KLDVTPQTQLTT 174

Query: 205 VDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGH 264
           +D S  K+  E     +  N  L  L    +++    +L ++ + +L  LD S+N     
Sbjct: 175 LDCSFNKIT-ELD---VSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT-E 226

Query: 265 IPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVN 324
           I V     L  L   + S+N L   +  S   +  L  L      L  EI          
Sbjct: 227 IDVTP---LTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID---LTHNTQ 276

Query: 325 LEYLALS-NNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
           L Y        ++    +   + T L  L  +      E+   LS+   L  L+LNN  L
Sbjct: 277 LIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

Query: 384 SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 443
           +  +   + + T+L+ +     H++        ++  L     ++     ++P      +
Sbjct: 331 T-ELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTI-TMPKETLTNN 384

Query: 444 IEHVHLSKNML 454
              + +S ++L
Sbjct: 385 SLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 58/304 (19%), Positives = 92/304 (30%), Gaps = 33/304 (10%)

Query: 224 NTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM 283
           + N  S       +     +       L  LD  N++      +E    L GL  L  + 
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTS 73

Query: 284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN 343
           N +  ++         L  L   +N+LT  +          L YL    N L     S  
Sbjct: 74  NNIT-TLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVS-- 124

Query: 344 FNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
                L +L    N    EI   +S    L  L  + N     +   +   T+L  +   
Sbjct: 125 -QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463
            N +     ++  Q   L  L+   NNI+  L    +   +  +  S N    +L     
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNIT-KLDLNQNI-QLTFLDCSSN----KLTEIDV 229

Query: 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 523
                L   D S N L   +      LS+L+ L     +L     + L    QL      
Sbjct: 230 TPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAE 283

Query: 524 NNNL 527
               
Sbjct: 284 GCRK 287

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 87.3 bits (217), Expect = 2e-18
 Identities = 80/412 (19%), Positives = 140/412 (33%), Gaps = 49/412 (11%)

Query: 19  KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQE 78
             ++ LD++C  +  + +    +   +   + + L D  L     K +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 79  LYIYNNDL--RGSLPWCMA---NMTSLRILYVSSNQLT----GSISSSPLVHLTSIEELH 129
           L + +N+L   G              ++ L + +  LT    G +SS+ L  L +++ELH
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 130 LSNNHFQIP----ISLEPLFNHSRLKVFWAKNNEINAEITQSPSLT-APNFQLSRLSLS- 183
           LS+N         +    L    RL+    +   ++A   +  +           L++S 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 184 ---SGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWL---LENNTNLESLFLVNDSL 237
              +  G  V+          LE + L    +  +    L   + +  +L  L L ++ L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 238 --AGPFRL---PIHSHKRLRLLDISNNNFRGHIPVEIGDVL---PGLFSLNISMNALDGS 289
              G   L    +H   RLR L I           ++  VL     L  L+++ N L   
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 290 IPSSFGNM-----KFLQLLDVTNNQLTGEIPEHLAVG---CVNLEYLALSNNSLEG---H 338
                          L+ L V +   T     H +        L  L +SNN LE     
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 339 MFSR--NFNLTNLKWLQLEGNHF----VGEIPQSLSKCFVLEGLFLNNNSLS 384
              +      + L+ L L            +  +L     L  L L+NN L 
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 57/316 (18%), Positives = 96/316 (30%), Gaps = 63/316 (19%)

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALD----GSIPSSFGNMKFLQLLDVT 306
           ++ LDI           E+  +L     + +    L       I S+      L  L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 307 NNQLTGE----IPEHLAVGCVNLEYLALSNNSLE-------GHMFSRNFNLTNLKWLQLE 355
           +N+L       + + L      ++ L+L N  L                    L+ L L 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELHLS 121

Query: 356 GNHFVGEIPQSLSK-----CFVLEGLFLNNNSLSGMIPRWLGN-LTRLQHIMMPKNHLEG 409
            N       Q L +        LE L L   SLS      L + L               
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD---------- 171

Query: 410 PIPVEFCQLDWLQILDISDNNISGS----LPSCF--HPLSIEHVHLSKNMLHGQLKRG-- 461
                       + L +S+N+I+ +    L       P  +E + L    +     R   
Sbjct: 172 -----------FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 462 -TFFNYHSLVTLDLSYNRLNGS-----ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL- 514
               +  SL  L L  N+L            +   S+L  L +    +  +    LC++ 
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 515 ---NQLQLLDLSNNNL 527
                L+ L L+ N L
Sbjct: 281 RAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 58/350 (16%), Positives = 111/350 (31%), Gaps = 79/350 (22%)

Query: 12  GQGFPHFKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILD 67
                     + L +    I  N + ++++ +    S   L+ L L    + +++ + L 
Sbjct: 163 ASVLRAKPDFKELTVSNNDI--NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 68  RGLCSLVHLQELYIYNNDLRGS-----LPWCMANMTSLRILYVSSNQLT----GSISSSP 118
             + S   L+EL + +N L         P  +   + LR L++    +T    G +    
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV- 279

Query: 119 LVHLTSIEELHLSNNHFQ----IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
           L    S++EL L+ N         +    L    +L+  W K+    A            
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA----------- 328

Query: 175 FQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGE----FPTWLLENNTNLESL 230
                   SS           L     L  + +S+ ++           L +  + L  L
Sbjct: 329 ---CCSHFSSV----------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 231 FLVNDSL----AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNAL 286
           +L +  +           + ++  LR LD+SNN         +GD           +  L
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNC--------LGDA---------GILQL 418

Query: 287 DGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLE 336
             S+         L+ L + +   + E           L+ L     SL 
Sbjct: 419 VESVRQ---PGCLLEQLVLYDIYWSEE-------MEDRLQALEKDKPSLR 458

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 57/317 (17%), Positives = 98/317 (30%), Gaps = 49/317 (15%)

Query: 220 LLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL 279
           L     +LE L    D+ A            ++ L +     R                 
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLG----QFTDIIKSLSLKRLTVR----------------- 76

Query: 280 NISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCV-NLEYLALSNNSLEGH 338
              + +           +  LQ L + N ++TG  P  L      +L  L L N S    
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 339 MFS----RNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
                  + +    LK L +   H +    + +     L  L L++N   G         
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------ 190

Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNM 453
                       +    P++F  L  L + +      SG   +       ++ + LS N 
Sbjct: 191 -----------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK 513
           L       +      L +L+LS+  L   +   +   ++LS L L +N L+   P    +
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNPSPD-E 294

Query: 514 LNQLQLLDLSNNNLHGP 530
           L Q+  L L  N     
Sbjct: 295 LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 55/305 (18%), Positives = 86/305 (28%), Gaps = 19/305 (6%)

Query: 93  CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKV 152
           C  N +  +  + S+    G+          S+E L    +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 153 FWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQH-DLEYVDLSHMK 211
              +   I + I            L  L+L +    G   P  L     DL  ++L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 212 MNGEFPTWLLE----NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPV 267
                  WL E        L+ L +            +     L  LD+S+N   G   +
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 268 E---IGDVLPGLFSLNISMN---ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVG 321
                    P L  L +         G   +       LQ LD+++N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG-EIPQSLSKCFVLEGLFLNN 380
              L  L LS   L+  +         L  L L  N       P  L +   +  L L  
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQ---VGNLSLKG 305

Query: 381 NSLSG 385
           N    
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 5e-15
 Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 17/269 (6%)

Query: 79  LYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHL--TSIEELHLSNNHFQ 136
           L   + +        +    SL+ L V + ++   I    L  L  + ++EL L N    
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 137 IPISLEPL-FNHSRLKVFWAKNNEINAEITQSPSLTAPNFQ-LSRLSLSSGYGDGVIFPK 194
                  L      L +   +N            L       L  LS++  +        
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE- 167

Query: 195 FLYHQHDLEYVDLSHMKMNGEFP---TWLLENNTNLESLFLVN---DSLAGPFRLPIHSH 248
            +     L  +DLS     GE              L+ L L N   ++ +G       + 
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
            +L+ LD+S+N+ R        D    L SLN+S   L             L +LD++ N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYN 284

Query: 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEG 337
           +L    P         +  L+L  N    
Sbjct: 285 RLD-RNPSPD--ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 5e-12
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 20/218 (9%)

Query: 333 NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW-- 390
            + +  ++    +L  L  L+             + K   L+ L +    +   I     
Sbjct: 32  GAADVELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL 89

Query: 391 -LGNLTRLQHIMMPKNHLEGPIPVEFCQLDW--LQILDISDNNISGSLP-----SCFHPL 442
            +  ++ LQ + +    + G  P    +     L IL++ + + +           +   
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 443 SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI----SDWVDGLSQLSHLIL 498
            ++ + +++              + +L TLDLS N   G      +        L  L L
Sbjct: 150 GLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 499 GHNNLE---GEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533
            +  +E   G          QLQ LDLS+N+L      
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 63/282 (22%)

Query: 8   GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILD 67
           G LR  G    + L L ++E T     T+   ++  + P L  L+L + +  T  + + +
Sbjct: 87  GALRVLGISGLQELTLENLEVTG----TAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142

Query: 68  RGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSIS---SSPLVHLTS 124
                   L+ L I            +    +L  L +S N   G      +   +   +
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 125 IEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSS 184
           ++ L L N   +                                + +     L+   +  
Sbjct: 203 LQVLALRNAGME--------------------------------TPSGVCSALAAARVQ- 229

Query: 185 GYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP 244
                            L+ +DLSH  +         +  + L SL L    L    ++P
Sbjct: 230 -----------------LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---QVP 269

Query: 245 IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNAL 286
                +L +LD+S N      P      LP + +L++  N  
Sbjct: 270 KGLPAKLSVLDLSYNRLD-RNPSPDE--LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 21/144 (14%)

Query: 15  FPHFKSLELLDMECTRIALNTSFL-QIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
              F +L  LD+           +  +     P+L+ L+L ++ +    S +      + 
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAAR 227

Query: 74  VHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTG-----------------SIS 115
           V LQ L + +N LR +         + L  L +S   L                    + 
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLD 287

Query: 116 SSPLV-HLTSIEELHLSNNHFQIP 138
            +P    L  +  L L  N F   
Sbjct: 288 RNPSPDELPQVGNLSLKGNPFLDS 311

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 57/330 (17%), Positives = 97/330 (29%), Gaps = 81/330 (24%)

Query: 223 NNTNLESLFLVNDSLAGPFRLPIHSHK--RLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
           NN +L      N              K  +  L   + N     +   +   +     L 
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQ 65

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF 340
           ++   L  S+P +      + +L++T N L   +PE  A    +LEYL   +N L     
Sbjct: 66  LNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA----SLEYLDACDNRLS---- 113

Query: 341 SRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHI 400
           +      +LK L ++ N     +P+  +    LE +  +NN L+ M+P    +L  L   
Sbjct: 114 TLPELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSLEVL--- 165

Query: 401 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKR 460
                                    + +N ++  LP                        
Sbjct: 166 ------------------------SVRNNQLT-FLPELPE-------------------- 180

Query: 461 GTFFNYHSLVTLDLSYNRLNG---SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 517
                  SL  LD+S N L                        N +   +P  +  L+  
Sbjct: 181 -------SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

Query: 518 QLLDLSNNNLHGPIPPCFDNTTLHESYSNS 547
             + L +N L   I       T    Y   
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 2e-13
 Identities = 60/331 (18%), Positives = 108/331 (32%), Gaps = 38/331 (11%)

Query: 202 LEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNF 261
           +  ++++   +    P        +LE L   ++ L+    LP      L+ LD+ NN  
Sbjct: 82  ITVLEITQNAL-ISLPELP----ASLEYLDACDNRLS---TLP-ELPASLKHLDVDNNQL 132

Query: 262 RGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVG 321
              +P         L  +N   N L   +P    +   L++L V NNQLT  +PE     
Sbjct: 133 T-MLPELPA----LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPE-- 180

Query: 322 CVNLEYLALSNNSLEG--HMFSRNFNLTNL-KWLQLEGNHFVGEIPQSLSKCFVLEGLFL 378
             +LE L +S N LE    +  RN +      + +   N     IP+++        + L
Sbjct: 181 --SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237

Query: 379 NNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE--FCQLDWLQILDISDNNISGSLP 436
            +N LS  I   L   T       P+ +       +    +     +      N    + 
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

Query: 437 SCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHL 496
             +H    E    + +    +L         S              ++ W++ LS  + L
Sbjct: 298 QIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG---------FREQVAAWLEKLSASAEL 348

Query: 497 ILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
                 +  +          L   +L    L
Sbjct: 349 RQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 56/322 (17%), Positives = 92/322 (28%), Gaps = 65/322 (20%)

Query: 71  CSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHL 130
           C +    EL +   +L  SLP  +     + +L ++ N L  S+   P     S+E L  
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP----ASLEYLDA 107

Query: 131 SNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGV 190
            +N      +L  L   + LK     NN                 QL+ L          
Sbjct: 108 CDNRLS---TLPELP--ASLKHLDVDNN-----------------QLTMLPELPA----- 140

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKR 250
                      LEY++  + ++     T L E  T+LE L + N+ L     LP    + 
Sbjct: 141 ----------LLEYINADNNQL-----TMLPELPTSLEVLSVRNNQLTFLPELP----ES 181

Query: 251 LRLLDISNNNFRGHIPVEIGDV---LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
           L  LD+S N     +P                    N +   IP +  ++     + + +
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILED 239

Query: 308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM-----FSRNFNLTNLKWLQLEGNHFVGE 362
           N L+                                   R        W        V +
Sbjct: 240 NPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 363 IPQSLSKCFVLEGLFLNNNSLS 384
           I  +              + LS
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 49/224 (21%), Positives = 72/224 (32%), Gaps = 45/224 (20%)

Query: 16  PHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVH 75
               SLE LD    R       L  + E   SLK+L + +     N   +L         
Sbjct: 97  ELPASLEYLDACDNR-------LSTLPELPASLKHLDVDN-----NQLTMLPELPAL--- 141

Query: 76  LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
           L+ +   NN L   LP      TSL +L V +NQLT  +   P     S+E L +S N  
Sbjct: 142 LEYINADNNQLT-MLP---ELPTSLEVLSVRNNQLT-FLPELP----ESLEALDVSTNLL 192

Query: 136 -QIPISLEPLFNHSRLKV-FWAKNNEIN---AEITQSPSLT-----------APNFQLSR 179
             +P       +    ++ F  + N I      I                       LS+
Sbjct: 193 ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 180 LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLEN 223
            +    Y    I+      Q +  +  L+          W  EN
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA-----WFPEN 291

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 4e-16
 Identities = 47/171 (27%), Positives = 66/171 (38%), Gaps = 9/171 (5%)

Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
              L L+ N L       L   TRL  + + +  L   + V    L  L  LD+S N + 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQLQ 90

Query: 433 GSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGL 490
            SLP     L  +  + +S N L   L  G       L  L L  N L  ++   +    
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 491 SQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNNLHGPIPPCFDNTTL 540
            +L  L L +NNL  E+P  L   L  L  L L  N+L+      F +  L
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 20/188 (10%)

Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
            +   L L  + L       +  + RL  L++        + V     LP L +L++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 285 ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFS 341
            L  S+P     +  L +LDV+ N+LT  +P     G   L+ L L  N   +L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 342 RNFNLTNLKWLQLEGNHFVGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397
                  L+ L L  N+   E+P      L     L+ L L  NSL   IP+       L
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLEN---LDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 398 QHIMMPKN 405
               +  N
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 17/147 (11%)

Query: 15  FPHFKSLELLDMECTRIA-LNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
                 L  LD+   ++  L         +++P+L  L +S + L +     L      L
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLG-----QTLPALTVLDVSFNRLTSLPLGALRG----L 123

Query: 74  VHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
             LQELY+  N+L+ +LP   +     L  L +++N LT  + +  L  L +++ L L  
Sbjct: 124 GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181

Query: 133 NHFQ-IPISLEPLFNHSRLKVFWAKNN 158
           N    IP   +  F    L   +   N
Sbjct: 182 NSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 46/241 (19%), Positives = 69/241 (28%), Gaps = 72/241 (29%)

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
                L++  N L       +   T L  L +   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 134 HFQIPISLEPLFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIF 192
             Q   SL  L      L V     N +                    SL  G   G+  
Sbjct: 88  QLQ---SLPLLGQTLPALTVLDVSFNRLT-------------------SLPLGALRGL-- 123

Query: 193 PKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL----AGPF-RLPIHS 247
                                             L+ L+L  + L     G     P   
Sbjct: 124 --------------------------------GELQELYLKGNELKTLPPGLLTPTP--- 148

Query: 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
             +L  L ++NNN    +P  + + L  L +L +  N+L  +IP  F     L    +  
Sbjct: 149 --KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 308 N 308
           N
Sbjct: 205 N 205

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.7 bits (194), Expect = 5e-16
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN----SLEGHMFSRNFNLTNLKWLQLE 355
              L     +L   I +    G  +LE + +S N     +E  +FS   NL  L  +++E
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS---NLPKLHEIRIE 87

Query: 356 GNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN-HLEGPIPV 413
             + +  I  ++      L+ L ++N  +  +      +  +   + +  N ++      
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 414 EFCQL-DWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTL 472
            F  L     IL ++ N I     S F+   ++ ++LS N    +L    F      V L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 473 DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 525
           D+S  R++ S+  +  GL  L  L         ++P  L KL  L    L+  
Sbjct: 208 DISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 51/243 (20%), Positives = 81/243 (33%), Gaps = 14/243 (5%)

Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSS-FGNMKFL 300
            +P    +    L       R  I          L  + IS N +   I +  F N+  L
Sbjct: 23  EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 301 QLLDVTN-NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
             + +   N L   I         NL+YL +SN  ++        +      L ++ N  
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 360 VGEIPQSLSK--CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FC 416
           +  I ++      F    L+LN N +  +           +  +   N+LE  +P + F 
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFH 199

Query: 417 QLDWLQILDISDNNISGSLPSC-FHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS 475
                 ILDIS   I  SLPS     L      L     +   K  T     +L+   L+
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENLK----KLRARSTYNLKKLPTLEKLVALMEASLT 254

Query: 476 YNR 478
           Y  
Sbjct: 255 YPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 46/246 (18%), Positives = 81/246 (32%), Gaps = 42/246 (17%)

Query: 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHF 359
                +++T EIP  L     N   L         ++   FS      +L+ +++  N  
Sbjct: 14  FLCQESKVT-EIPSDLPR---NAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQNDV 66

Query: 360 VGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 415
           +  I      +L K   +       N+L  + P    NL  LQ++++    ++    V  
Sbjct: 67  LEVIEADVFSNLPKLHEIR--IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 416 CQLDWLQILDISDNNISGSLPS-CFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474
                  +LDI DN    ++    F  LS E                        V L L
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFE-----------------------SVILWL 161

Query: 475 SYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533
           + N +   I +   +G       +  +NNLE          +   +LD+S   +H     
Sbjct: 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 534 CFDNTT 539
             +N  
Sbjct: 221 GLENLK 226

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 36/284 (12%), Positives = 69/284 (24%), Gaps = 59/284 (20%)

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN-N 133
           +  EL      LR       +    L  + +S N +   I +    +L  + E+ +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 134 HFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFP 193
           +    I+ E   N   L+     N  I                              +  
Sbjct: 91  NLLY-INPEAFQNLPNLQYLLISNTGIK----------------------------HLPD 121

Query: 194 KFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRL 253
               H      +D+                N N+ ++          F           +
Sbjct: 122 VHKIHSLQKVLLDIQD--------------NINIHTI------ERNSFV---GLSFESVI 158

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
           L ++ N  +  I     +            N L+      F       +LD++  ++   
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 314 IPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN 357
           +P +       L   +  N             L  L    L   
Sbjct: 217 LPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 39/259 (15%), Positives = 83/259 (32%), Gaps = 54/259 (20%)

Query: 9   VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISES----MPSLKYLSLSDSTLGTNSSK 64
           V++   F  F  LE +++    +      L++I       +P L  + +  +    N+  
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDV------LEVIEADVFSNLPKLHEIRIEKA----NNLL 93

Query: 65  ILDRGLCS-LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT 123
            ++      L +LQ L I N  ++        +     +L +  N    +I  +  V L+
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 124 S-IEELHLSNNHFQIPISLEP-LFNHSRL-KVFWAKNNEINAEITQSPSLTAPNFQLSRL 180
                L L+ N  Q    +    FN ++L ++  + NN +                    
Sbjct: 154 FESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNLE------------------- 191

Query: 181 SLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGP 240
                     +     +       +D+S  +++   P++ LEN   L +    N      
Sbjct: 192 ---------ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT 241

Query: 241 FRLPIHSHKRLRLLDISNN 259
                     L    ++  
Sbjct: 242 L----EKLVALMEASLTYP 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 8e-16
 Identities = 44/258 (17%), Positives = 93/258 (36%), Gaps = 19/258 (7%)

Query: 271 DVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLAL 330
           D        N+   ++  ++      +  +  +   N+ +   + + +     N+  L L
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFL 72

Query: 331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW 390
           + N L         NL NL WL L+ N  + ++  SL     L+ L L +N +S +    
Sbjct: 73  NGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGISDING-- 126

Query: 391 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
           L +L +L+ + +  N +         +L  L  L + DN IS  +        +++++LS
Sbjct: 127 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 183

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510
           KN +             +L  L+L          +    L   + +     +L    P  
Sbjct: 184 KNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 238

Query: 511 LCKLNQLQLLDLSNNNLH 528
           +      +  ++  +   
Sbjct: 239 ISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 2e-15
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 16/226 (7%)

Query: 321 GCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 380
                    L   S+          L ++  +    +  +  + Q +     +  LFLN 
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNG 74

Query: 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 440
           N L+ + P  L NL  L  + + +N ++         L  L+ L +  N IS  +    H
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DINGLVH 129

Query: 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 500
              +E ++L  N +              L TL L  N+++  I   + GL++L +L L  
Sbjct: 130 LPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 184

Query: 501 NNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 546
           N++       L  L  L +L+L +            N  +  +  N
Sbjct: 185 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.8 bits (183), Expect = 3e-14
 Identities = 47/308 (15%), Positives = 99/308 (32%), Gaps = 75/308 (24%)

Query: 76  LQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
           + E    +  ++   P             +    +T    +     L SI+++  +N+  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 136 QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF 195
           +   S++ +     +   +   N++                              I P  
Sbjct: 56  K---SVQGIQYLPNVTKLFLNGNKLT----------------------------DIKP-- 82

Query: 196 LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD 255
           L +  +L ++ L   K         +++ ++L+ L                  K+L+ L 
Sbjct: 83  LTNLKNLGWLFLDENK---------IKDLSSLKDL------------------KKLKSLS 115

Query: 256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIP 315
           + +N       +     LP L SL +  N +  +  +    +  L  L + +NQ++ +I 
Sbjct: 116 LEHNGISD---INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 316 EHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEG 375
                G   L+ L LS N +          L NL  L+L     + +     S   V   
Sbjct: 170 PL--AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 376 LFLNNNSL 383
           +   + SL
Sbjct: 226 VKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 7e-14
 Identities = 48/271 (17%), Positives = 104/271 (38%), Gaps = 34/271 (12%)

Query: 43  ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
           ++       +L   ++    +         L  + ++   N+D++ S+   +  + ++  
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 69

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINA 162
           L+++ N+LT      PL +L ++  L L  N  +I   L  L +  +LK    ++N I+ 
Sbjct: 70  LFLNGNKLT---DIKPLTNLKNLGWLFLDEN--KI-KDLSSLKDLKKLKSLSLEHNGIS- 122

Query: 163 EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE 222
           +I     L     QL  L L     + +     L     L+ + L   +++   P   L 
Sbjct: 123 DINGLVHLP----QLESLYLG---NNKITDITVLSRLTKLDTLSLEDNQISDIVP---LA 172

Query: 223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNIS 282
             T L++L+L  + ++      +   K L +L++ +         +  +    L   N  
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE----CLNKPINHQSNLVVPNTV 226

Query: 283 MNALDGSI--PSSFGNMKFLQLLDVTNNQLT 311
            N  DGS+  P    +    +  +V  +   
Sbjct: 227 KN-TDGSLVTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 6e-12
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 30/224 (13%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILD-RGLC 71
           QG  +  ++  L +   ++   T    +   ++ +L +L L ++       KI D   L 
Sbjct: 59  QGIQYLPNVTKLFLNGNKL---TDIKPL--TNLKNLGWLFLDEN-------KIKDLSSLK 106

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
            L  L+ L + +N +   +   + ++  L  LY+ +N++T     + L  LT ++ L L 
Sbjct: 107 DLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLE 161

Query: 132 NNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVI 191
           +N       + PL   ++L+  +   N I +++     L      L  L L S       
Sbjct: 162 DNQIS---DIVPLAGLTKLQNLYLSKNHI-SDLRALAGLK----NLDVLELFSQE----C 209

Query: 192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVND 235
             K + HQ +L   +             ++ ++ + E   +   
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 33/193 (17%)

Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
           +      +  +  + P             + K  +   +     +L+ +  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 433 GSLPSCFHPLSIEHVHLSKNMLHGQLKR-GTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
            S+    +  ++  + L+ N    +L       N  +L  L L  N++   +S  +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 492 QLSHLILGHNNLEGEVPVQ--------------------LCKLNQLQLLDLSNNNLHGPI 531
           +L  L L HN +     +                     L +L +L  L L +N +   I
Sbjct: 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-I 168

Query: 532 PPCFDNTTLHESY 544
            P    T L   Y
Sbjct: 169 VPLAGLTKLQNLY 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 29/225 (12%)

Query: 290 IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNL 346
           +P S       + LD++ N L   +  +       L+ L LS     ++E   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 347 TNLKWLQLEGNH---FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
           ++L  L L GN            LS    L+ L     +L+ +    +G+L  L+ + + 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSS---LQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 404 KNHL-EGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHPLS-----IEHVHLSKNMLHG 456
            N +    +P  F  L  L+ LD+S N I  S+       L         + LS N ++ 
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 457 QLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501
            ++ G F     L  L L  N+L        D L+ L  + L  N
Sbjct: 191 FIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 13/208 (6%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---S 334
           +L++S N L      SF +   LQ+LD++  ++   I +       +L  L L+ N   S
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMI-PRWLGN 393
           L    FS    L++L+ L     +        +     L+ L + +N +     P +  N
Sbjct: 91  LALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 394 LTRLQHIMMPKNHLEGPIPVEFCQLDWLQI----LDISDNNISGSLPSCFHPLSIEHVHL 449
           LT L+H+ +  N ++     +   L  + +    LD+S N ++   P  F  + ++ + L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 450 SKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
             N L   +  G F    SL  + L  N
Sbjct: 208 DTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 13/179 (7%)

Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNI 431
            + L L+ N L  +      +   LQ + + +  ++  I    +  L  L  L ++ N I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI 88

Query: 432 SGSLPS-CFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-D 488
             SL    F  L S++ +   +  L   L+     +  +L  L++++N +          
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 489 GLSQLSHLILGHNNL---EGEVPVQLCKLNQLQL-LDLSNNNLHGPIPP-CFDNTTLHE 542
            L+ L HL L  N +          L ++  L L LDLS N ++  I P  F    L E
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKE 204

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 47/225 (20%), Positives = 72/225 (32%), Gaps = 36/225 (16%)

Query: 323 VNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN 379
            + + L LS N    L  + F    +   L+ L L           +      L  L L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 380 NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 439
            N +  +       L+ LQ ++  + +L          L  L+ L+++ N I  S     
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL-- 141

Query: 440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQL----S 494
                                  F N  +L  LDLS N++  SI       L Q+     
Sbjct: 142 --------------------PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 495 HLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
            L L  N +   +     K  +L+ L L  N L       FD  T
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGL 70
           F  F  L++LD       L+   +Q I +    S+  L  L L+ + + + +        
Sbjct: 48  FFSFPELQVLD-------LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-- 98

Query: 71  CSLVHLQELYIYNNDLRGSLPWCMA-NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
             L  LQ+L     +L  SL      ++ +L+ L V+ N +          +LT++E L 
Sbjct: 99  --LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 130 LSNNHFQIPISLEP-LFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSS 184
           LS+N  Q   S+         ++ +     +     +           +L  L+L +
Sbjct: 156 LSSNKIQ---SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 46/248 (18%), Positives = 87/248 (35%), Gaps = 53/248 (21%)

Query: 98  TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEP-LFNH-SRLKVFWA 155
            S + L +S N L   + S        ++ L LS    Q   ++E   +   S L     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL 83

Query: 156 KNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGE 215
             N                  +   SL+ G      F         L+ +      +   
Sbjct: 84  TGN-----------------PIQ--SLALG-----AF----SGLSSLQKLVAVETNLA-S 114

Query: 216 FPTWLLENNTNLESLFLVNDSL-----AGPF-RLPIHSHKRLRLLDISNNNFRGHIPVEI 269
              + + +   L+ L + ++ +        F  L       L  LD+S+N  +  I    
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ-SIYCTD 168

Query: 270 GDVLPGL----FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNL 325
             VL  +     SL++S+N ++   P +F  ++ L+ L +  NQL   +P+ +     +L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSL 226

Query: 326 EYLALSNN 333
           + + L  N
Sbjct: 227 QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 52/252 (20%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLP-WCMANMTSLRILY 104
            S K L LS + L    S        S   LQ L +   +++ ++      +++ L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82

Query: 105 VSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEP-LFNH-SRLKVFWAKNNEINA 162
           ++ N +  S++      L+S+++L     +     SLE     H   LK     +N I  
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 163 EITQSPSLTAPN-FQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLL 221
                 S   P  F     +L++                 LE++DLS  K+        L
Sbjct: 138 ------SFKLPEYFS----NLTN-----------------LEHLDLSSNKIQ-SIYCTDL 169

Query: 222 ENNTNLE----SLFLVNDSLAGPFRLPIHSHKRLRL--LDISNNNFRGHIPVEIGDVLPG 275
                +     SL L  + +     +   + K +RL  L +  N  +  +P  I D L  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN---FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTS 225

Query: 276 LFSLNISMNALD 287
           L  + +  N  D
Sbjct: 226 LQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQ-ELYIYNNDLRGSLPWCMANMTSLRI 102
           ++ +L++L LS + + +     L   L  +  L   L +  N +   +         L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
           L + +NQL  S+       LTS++++ L  N + 
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 50/277 (18%), Positives = 96/277 (34%), Gaps = 43/277 (15%)

Query: 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
           L     +    + +      +  ++  +  L      +T  I E +     NL  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQ-YLNNLIGLELKD 72

Query: 333 NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLG 392
           N +     +   NLT +  L+L GN    +   +++    ++ L L +  ++ + P  L 
Sbjct: 73  NQIT--DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN 452
            L+ LQ + +  N +    P     L  LQ L I +  +S           +  +     
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS----------DLTPLA---- 170

Query: 453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLC 512
                       N   L TL    N+++  IS  +  L  L  + L +N +    P  L 
Sbjct: 171 ------------NLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LA 214

Query: 513 KLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 549
             + L ++ L+N  +        +N  +       S 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 27/292 (9%)

Query: 60  TNSSKILD-RGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSP 118
           T  + I       +L +  ++    +++  ++    A++  +  L      +T   +   
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEG 58

Query: 119 LVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLS 178
           + +L ++  L L +N       L PL N +++       N +   ++    L      + 
Sbjct: 59  VQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIK 110

Query: 179 RLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA 238
            L L+S     +     L    +L+ + L   ++    P   L   TNL+ L + N  ++
Sbjct: 111 TLDLTST---QITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS 164

Query: 239 GPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMK 298
                P+ +  +L  L   +N      P+     LP L  +++  N +  S  S   N  
Sbjct: 165 DL--TPLANLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKNNQI--SDVSPLANTS 217

Query: 299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLK 350
            L ++ +TN  +T +   +     V       S   +     S N    +  
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPN 269

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 15/198 (7%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
            L N   +    ++    +    +    +  L      ++ +    +  L  L  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF 464
           N +    P++   L  +  L++S N +  ++ +     SI+ + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 465 NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 524
              +L  L L  N++  +IS  + GL+ L +L +G+  +    P  L  L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 525 NNLHGPIPPCFDNTTLHE 542
           N +   I P      L E
Sbjct: 183 NKISD-ISPLASLPNLIE 199

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 41/289 (14%), Positives = 90/289 (31%), Gaps = 51/289 (17%)

Query: 95  ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFW 154
             + +   +    + +T    +     L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 155 AKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNG 214
            K+N+I  ++    +LT                              +  ++LS   +  
Sbjct: 70  LKDNQIT-DLAPLKNLT-----------------------------KITELELSGNPLKN 99

Query: 215 EFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLP 274
                 +    ++++L L +  +      P+     L++L +  N      P+     L 
Sbjct: 100 VSA---IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISPLA---GLT 151

Query: 275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS 334
            L  L+I    +  S  +   N+  L  L   +N+++ +I         NL  + L NN 
Sbjct: 152 NLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQ 206

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
           +     S   N +NL  + L       +     +   V   +   + + 
Sbjct: 207 IS--DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 19/148 (12%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS 72
               +   +  L++    +   ++        + S+K L L+ + +   +       L  
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAI-----AGLQSIKTLDLTSTQITDVT------PLAG 127

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           L +LQ LY+  N +    P  +A +T+L+ L + + Q++     +PL +L+ +  L   +
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADD 182

Query: 133 NHFQIPISLEPLFNHSRLKVFWAKNNEI 160
           N       + PL +   L     KNN+I
Sbjct: 183 NKIS---DISPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 14/154 (9%)

Query: 375 GLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 434
           G      +++ + P     L     I   K+++   +      LD +  L      ++ +
Sbjct: 1   GSITQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-T 55

Query: 435 LPSCFHPLSIEHVHLSKNMLHGQLKRGTFF-NYHSLVTLDLSYNRLNGSISDWVDGLSQL 493
           +    +  ++  + L  N    Q+       N   +  L+LS N L  ++S  + GL  +
Sbjct: 56  IEGVQYLNNLIGLELKDN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSI 109

Query: 494 SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
             L L    +    P  L  L+ LQ+L L  N +
Sbjct: 110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI 141

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 14/151 (9%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS 72
            G  +  +++ L +       N + +      + +L+ L +    + ++        L  
Sbjct: 60  TGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLRIMGKDVTSDKIP----NLSG 110

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           L  L  L I ++    S+   +  +  +  + +S N     I   PL  L  ++ L++  
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQF 168

Query: 133 NHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
           +          + +  +L   +A +  I  +
Sbjct: 169 DGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 31/183 (16%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
            + +L ++ L   + V ++   +     ++ L +NN   +   P  +  L+ L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF 464
             +          L  L +LDIS +    S+ +  + L                      
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--------------------- 136

Query: 465 NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 524
               + ++DLSYN     I   +  L +L  L +  + +       +    +L  L   +
Sbjct: 137 ---KVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 525 NNL 527
             +
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 293 SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352
           +   M  L  + + N  +T ++   +     N++ L ++N       ++    L+NL+ L
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP 412
           ++ G     +   +LS    L  L +++++    I   +  L ++  I +  N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 413 VEFCQLDWLQILDISDNNIS 432
                L  L+ L+I  + + 
Sbjct: 154 -PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 27  ECTRIALNTSFLQIISES-MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND 85
                 L  S    I+E+ M SL Y++L++  +    + +   G+    ++++L I N  
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINV----TDL--TGIEYAHNIKDLTINNIH 77

Query: 86  LRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLF 145
                P  ++ +++L  L +    +T S     L  LTS+  L +S++       L  + 
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDD-SILTKIN 133

Query: 146 NHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSS 184
              ++       N    +I    +L     +L  L++  
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTLP----ELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
             ++ L I+N +   + P+     L  L  L I    +      +   +  L LLD++++
Sbjct: 66  HNIKDLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS 368
                I   +      +  + LS N     +      L  LK L ++ +         + 
Sbjct: 123 AHDDSILTKIN-TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IE 178

Query: 369 KCFVLEGLFLNNNSLSG 385
               L  L+  + ++ G
Sbjct: 179 DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
           +   +NLE L ++   +       +     L LLDIS++     I  +I   LP + S++
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIP-EHLAVGCVNLEYLALSNN 333
           +S N     I      +  L+ L++  + +      E        L  L   + 
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 28/188 (14%), Positives = 68/188 (36%), Gaps = 35/188 (18%)

Query: 343 NFNLTNLKWLQLE--GNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQH 399
           N   +  K       G      I ++ ++    L  + L N +++ +    +     ++ 
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKD 70

Query: 400 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLK 459
           + +   H     P+    L  L+ L I   +++         L+                
Sbjct: 71  LTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLT---------------- 112

Query: 460 RGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 519
                   SL  LD+S++  + SI   ++ L +++ + L +N    ++   L  L +L+ 
Sbjct: 113 --------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKS 163

Query: 520 LDLSNNNL 527
           L++  + +
Sbjct: 164 LNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 16/168 (9%)

Query: 94  MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVF 153
            A M SL  + +++  +T     + + +  +I++L ++N H     +  P+   S L+  
Sbjct: 40  EAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERL 93

Query: 154 WAKNNEI-NAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKM 212
                ++ + +I     LT     L+ L +S    D  I  K +     +  +DLS+   
Sbjct: 94  RIMGKDVTSDKIPNLSGLT----SLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGA 148

Query: 213 NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNN 260
             +     L+    L+SL +  D +       I    +L  L   +  
Sbjct: 149 ITDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 22/175 (12%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 61  NSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLV 120
             S   +     +  L  + + N ++       +    +++ L +++   T   + +P+ 
Sbjct: 31  GQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT---NYNPIS 85

Query: 121 HLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI-NAEITQSPSLTAPNFQLSR 179
            L+++E L +          +  L   + L +    ++   ++ +T+  +L     +++ 
Sbjct: 86  GLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP----KVNS 140

Query: 180 LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVN 234
           + LS       I P  L    +L+ +++    ++       +E+   L  L+  +
Sbjct: 141 IDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFS 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 19/258 (7%)

Query: 271 DVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLAL 330
           D        N+   ++      +   +  +  +   N+ +   + + +     N+  L L
Sbjct: 21  DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFL 75

Query: 331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW 390
           + N L         NL NL WL L+ N  V ++  SL     L+ L L +N +S +    
Sbjct: 76  NGNKLT--DIKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGISDING-- 129

Query: 391 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
           L +L +L+ + +  N +     +   +L  L  L + DN IS  +        +++++LS
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 186

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510
           KN +             +L  L+L          +    L   + +     +L    P  
Sbjct: 187 KNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 241

Query: 511 LCKLNQLQLLDLSNNNLH 528
           +      +  ++  +   
Sbjct: 242 ISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 43/331 (12%), Positives = 102/331 (30%), Gaps = 74/331 (22%)

Query: 56  STLGTNSSKILD-RGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSI 114
           S   T  + I       +     +  +    +  ++      + S+  +  +++ +    
Sbjct: 5   SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--- 59

Query: 115 SSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
           S   + +L ++ +L L+ N  ++   ++PL N   L   +   N++  +++    L    
Sbjct: 60  SVQGIQYLPNVTKLFLNGN--KL-TDIKPLANLKNLGWLFLDENKVK-DLSSLKDLKK-- 113

Query: 175 FQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVN 234
                                      L+ + L H  ++       L +   LESL+L N
Sbjct: 114 ---------------------------LKSLSLEHNGISDING---LVHLPQLESLYLGN 143

Query: 235 DSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSF 294
           + +       +    +L  L + +N         I D+                      
Sbjct: 144 NKITDI--TVLSRLTKLDTLSLEDNQ--------ISDI-------------------VPL 174

Query: 295 GNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL 354
             +  LQ L ++ N ++ ++      G  NL+ L L +        +   NL     ++ 
Sbjct: 175 AGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 385
                V     S    +    +  +    + 
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 21/149 (14%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILD-RGLC 71
           QG  +  ++  L +   ++  +   L     ++ +L +L L ++       K+ D   L 
Sbjct: 62  QGIQYLPNVTKLFLNGNKLT-DIKPL----ANLKNLGWLFLDEN-------KVKDLSSLK 109

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
            L  L+ L + +N +   +   + ++  L  LY+ +N++T     + L  LT ++ L L 
Sbjct: 110 DLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLE 164

Query: 132 NNHFQIPISLEPLFNHSRLKVFWAKNNEI 160
           +N       + PL   ++L+  +   N I
Sbjct: 165 DNQIS---DIVPLAGLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 46/271 (16%), Positives = 99/271 (36%), Gaps = 40/271 (14%)

Query: 43  ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
           ++       +L   ++              L  + ++   N+D++ S+   +  + ++  
Sbjct: 21  DAFAETIKDNLKKKSVTDAV------TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 72

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINA 162
           L+++ N+LT      PL +L ++  L L  N  +    L  L +  +LK    ++N I+ 
Sbjct: 73  LFLNGNKLT---DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS- 125

Query: 163 EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSH---MKMNGEFPTW 219
           +I     L     QL  L L     + +     L     L+ + L       +       
Sbjct: 126 DINGLVHLP----QLESLYLG---NNKITDITVLSRLTKLDTLSLEDNQISDIVP----- 173

Query: 220 LLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL 279
            L   T L++L+L  + ++      +   K L +L++ +         +  +    L   
Sbjct: 174 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE----CLNKPINHQSNLVVP 226

Query: 280 NISMNALDGSI--PSSFGNMKFLQLLDVTNN 308
           N   N  DGS+  P    +    +  +V  +
Sbjct: 227 NTVKN-TDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 30/170 (17%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
                L   S++  +      L  +  I+   + ++    +++     +  L ++ N ++
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFLNGNKLT 81

Query: 433 GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ 492
             +    +  ++  + L +N +       +  +   L +L L +N ++  I+  +  L Q
Sbjct: 82  -DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQ 135

Query: 493 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542
           L  L LG+N +       L +L +L  L L +N +   I P    T L  
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQN 182

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 24/195 (12%)

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDV-----LPG 275
           ++   N+  LFL  + L      P+ + K L  L +  N         + D+     L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
           L SL++  N +  S  +   ++  L+ L + NN++T      L+     L+ L+L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 168

Query: 336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395
                     LT L+ L L  NH + ++ ++L+    L+ L L +            NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 396 RLQHIMMPKNHLEGP 410
               +      L  P
Sbjct: 225 VPNTVKNTDGSLVTP 239

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 7e-13
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 421 LQILDISDNNISGSLPS--CFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
             +LD+S NN+S  L +      L+ +  + LS N L+  +    F    +L  LDLS N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 478 RLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            L+ ++ +++   L  L  L+L +N++          + QLQ L LS N + 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 36/185 (19%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRW-LGNLTRLQHIMMPKNHLEGPIPVE-FCQLD 419
            +PQSL        L L++N+LS +   W    LT L  +++  NHL   I  E F  + 
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 420 WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
            L+ LD+S N++  +L                           F +  +L  L L  N +
Sbjct: 89  NLRYLDLSSNHLH-TLDE-----------------------FLFSDLQALEVLLLYNNHI 124

Query: 480 NGSISDWV-DGLSQLSHLILGHNNLEGEVPVQ----LCKLNQLQLLDLSNNNLHGPIPPC 534
              +     + ++QL  L L  N +    PV+      KL +L LLDLS+N L       
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 535 FDNTT 539
                
Sbjct: 183 LQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 347 TNLKWLQLEGNHFV----GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM 402
           +    L L  N+         P  L+    L  L L++N L+ +       +  L+++ +
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTN---LHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 403 PKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKR 460
             NHL   +    F  L  L++L + +N+I     + F  +  ++ ++LS+N +  +   
Sbjct: 96  SSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

Query: 461 GTFFNY---HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG-HNN 502
               +      L+ LDLS N+L       +  L       L  HNN
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 11/118 (9%)

Query: 46  PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCM-ANMTSLRILY 104
                L LS + L    ++     L    +L  L + +N L   +       + +LR L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRL---TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 105 VSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEP-LFNH-SRLKVFWAKNNEI 160
           +SSN L  ++       L ++E L L NNH      ++   F   ++L+  +   N+I
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI 148

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 8/168 (4%)

Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGS 434
           L L +N LS +  +    LT+L+ + +  N L+  +P   F +L  L+ L ++DN +  +
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 435 LPSC-FHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLS 491
           LP   F  L ++  + L +N L   L    F +   L  L L YN L  S+   V D L+
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 492 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539
            L  L L +N L+        KL +L+ L L NN L       FD+  
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 16/183 (8%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---S 334
            L++  N L      +F  +  L+LL + +N+L   +P  +     NLE L +++N   +
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQ----SLSKCFVLEGLFLNNNSLSGMIPRW 390
           L   +F     L NL  L+L+ N     +P     SL+K   L  L L  N L  +    
Sbjct: 100 LPIGVFD---QLVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQSLPKGV 152

Query: 391 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHL 449
              LT L+ + +  N L+      F +L  L+ L + +N +       F  L  ++ + L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 450 SKN 452
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 52/219 (23%), Positives = 83/219 (37%), Gaps = 45/219 (20%)

Query: 290 IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNL 346
           IP+        + LD+ +N+L+  +P         L  L L++N   +L   +F     L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---L 84

Query: 347 TNLKWLQLEGNHFV---GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
            NL+ L +  N        +   L     L  L L+ N L  + PR   +LT+L ++ + 
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 404 KNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGT 462
            N L+  +P   F +L  L+ L + +N +   +P                        G 
Sbjct: 142 YNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVP-----------------------EGA 176

Query: 463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501
           F     L TL L  N+L        D L +L  L L  N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)

Query: 18  FKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           F  L  L      + LN + LQ +       + +L+ L ++D+ L      + D+    L
Sbjct: 57  FHRLTKL----RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ----L 108

Query: 74  VHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           V+L EL +  N L+ SLP     ++T L  L +  N+L  S+       LTS++EL L N
Sbjct: 109 VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166

Query: 133 NHFQ 136
           N  +
Sbjct: 167 NQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCM-ANMTSLRI 102
           S+  L YLSL  + L +    + D+    L  L+EL +YNN L+  +P      +T L+ 
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDK----LTSLKELRLYNNQLK-RVPEGAFDKLTELKT 185

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
           L + +NQL   +       L  ++ L L  N
Sbjct: 186 LKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 51/243 (20%), Positives = 82/243 (33%), Gaps = 71/243 (29%)

Query: 98  TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEP-LFNH-SRLKVFWA 155
              + L + SN+L+ S+ S     LT +  L+L++N  Q   +L   +F     L+  W 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 156 KNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGE 215
            +N++                    +L  G     +F                       
Sbjct: 93  TDNKLQ-------------------ALPIG-----VF----------------------- 105

Query: 216 FPTWLLENNTNLESLFLVNDSL----AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD 271
                 +   NL  L L  + L       F     S  +L  L +  N  +  +P  + D
Sbjct: 106 ------DQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 272 VLPGLFSLNISMNALDGSIPSS-FGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLAL 330
            L  L  L +  N L   +P   F  +  L+ L + NNQL   +PE        L+ L L
Sbjct: 155 KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212

Query: 331 SNN 333
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 70/242 (28%)

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
              ++L + +N L          +T LR+LY++ N+L  ++ +     L ++E L +++N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 134 HFQIPISLEP-LFNH-SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVI 191
             Q   +L   +F+    L       N++                    SL        +
Sbjct: 96  KLQ---ALPIGVFDQLVNLAELRLDRNQLK-------------------SLPPR-----V 128

Query: 192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSL----AGPF-RLPIH 246
           F                                T L  L L  + L     G F +L   
Sbjct: 129 FDSL-----------------------------TKLTYLSLGYNELQSLPKGVFDKLT-- 157

Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
               L+ L + NN  +  +P    D L  L +L +  N L      +F +++ L++L + 
Sbjct: 158 ---SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 307 NN 308
            N
Sbjct: 214 EN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 45/237 (18%), Positives = 77/237 (32%), Gaps = 59/237 (24%)

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN----SLEGHMFSRNFNLTNLKWLQLE 355
            Q L +    L   IP H      N+  + +S +     LE H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG-PIPVE 414
                                  N  +L+ + P  L  L  L+ + +    L+  P   +
Sbjct: 89  -----------------------NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 415 FCQLDWLQILDISDNNISGSLPS-CFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD 473
               D   IL+I+DN    S+P   F  L  E                        +TL 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-----------------------TLTLK 162

Query: 474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK--LNQLQLLDLSNNNLH 528
           L  N    S+  +    ++L  + L  N     +         +   LLD+S  ++ 
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 14/202 (6%)

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPS-SFGNMKFLQLLDVTNNQ 309
            + L +   + R  IP      LP +  + +S++     + S SF N+  +  +++ N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSLEG-HMFSRNFNLTNLKWLQLEGNHFVGEIP---- 364
               I          L++L + N  L+     ++ ++      L++  N ++  IP    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 365 QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQL-DWLQ 422
           Q L        L L NN  +  +  +  N T+L  + + KN     I  + F  +     
Sbjct: 152 QGLCN--ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 423 ILDISDNNISGSLPS-CFHPLS 443
           +LD+S  +++ +LPS     L 
Sbjct: 209 LLDVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 23/211 (10%)

Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFL-VNDSL----AGPFRLPIHSHKRLRLLD 255
             + + L    +    P+    N  N+  +++ ++ +L    +  F    ++  ++  ++
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIE 86

Query: 256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIP--SSFGNMKFLQLLDVTNNQLTGE 313
           I N     +I  +    LP L  L I    L    P  +   +     +L++T+N     
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 314 IPEHLAVGCVN-LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCF- 371
           IP +   G  N    L L NN     +    FN T L  + L  N ++  I       F 
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID---KDAFG 201

Query: 372 ----VLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
                   L ++  S++ +  + L +L  L 
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 421 LQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
            Q L + + ++       F  L  I  +++S ++   QL+  +F+N   +  +++   R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 480 NGSISDWV-DGLSQLSHLILGHNNLEGEVP--VQLCKLNQLQLLDLSNNNLHGPIPP 533
              I       L  L  L + +  L+   P   ++   +   +L++++N     IP 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 38  LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPW-CMAN 96
           +Q I    PS + L L ++ L      I      +L ++  +Y+  +     L      N
Sbjct: 23  IQRIPSLPPSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 97  MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
           ++ +  + + + +    I    L  L  ++ L + N   +
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.2 bits (158), Expect = 3e-11
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILD-RGLC 71
           +   +F +L+ +D    R A               LK        L      +     L 
Sbjct: 403 ETLQYFSTLKAVD--PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE 460

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
            L+ +  L + +N LR +LP  +A +  L +L  S N L    +   + +L  ++EL L 
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLC 516

Query: 132 NNHFQIPISLEPLFNHSRLKVFWAKNNEI 160
           NN  Q   +++PL +  RL +   + N +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 51/324 (15%), Positives = 102/324 (31%), Gaps = 21/324 (6%)

Query: 216 FPTWLL-----ENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIG 270
           +  WLL      +      +      L+  F  P+    R+  L +  +     +     
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 271 DVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVN------ 324
           D       + +              +   +      + +    + +     C +      
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 384
           L    LS       + S   +   L+ L+ E    +  I   +     L+ L     +L 
Sbjct: 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRA---LDPLLYEKETLQ 406

Query: 385 GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSI 444
                   +  R  ++   ++       V   +   +++L ++  +++  L      L +
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLV 465

Query: 445 EHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
            H+ LS N L   L          L  L  S N L  ++   V  L +L  L+L +N L+
Sbjct: 466 THLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

Query: 505 G-EVPVQLCKLNQLQLLDLSNNNL 527
                  L    +L LL+L  N+L
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 43  ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
           E +  + +L LS      N  + L   L +L  L+ L   +N L  ++   +AN+  L+ 
Sbjct: 460 EQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE 512

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
           L + +N+L  S +  PLV    +  L+L  N   
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 37/257 (14%)

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP--IHSH 248
             P+  +              +  + P     ++   E LF    S+     L   + S 
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESC 371

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
           K L+ L+  N                 L ++ + M ALD  +        F  L  V   
Sbjct: 372 KELQELEPENK--------------WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417

Query: 309 QLTGEIPEH---------LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
           +                 L +   ++  L L++  L   +      L  +  L L  N  
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL 475

Query: 360 VGEIPQSLSKCFVLEGLFLNNN---SLSGMIPRWLGNLTRLQHIMMPKNHLEG-PIPVEF 415
              +P +L+    LE L  ++N   ++ G     + NL RLQ +++  N L+        
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQSAAIQPL 529

Query: 416 CQLDWLQILDISDNNIS 432
                L +L++  N++ 
Sbjct: 530 VSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 47/301 (15%), Positives = 93/301 (30%), Gaps = 29/301 (9%)

Query: 228 ESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGL-FSLNISMNAL 286
           +S +  +  L G               + +  +     P+ +G  +  L   ++ +  ++
Sbjct: 226 QSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSV 285

Query: 287 DGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNL 346
           +   P        + L D+    L  ++P+H                 L+        + 
Sbjct: 286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH 406
              + L             S+ K  VL+    +   L  + P     L  +  +M   + 
Sbjct: 346 ATDEQLF--------RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 407 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNY 466
           L          L +   L   D   +  L        +E+                   Y
Sbjct: 398 LLYEK----ETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN-------------SVLKMEY 440

Query: 467 HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNN 526
             +  L L++  L   +   ++ L  ++HL L HN L   +P  L  L  L++L  S+N 
Sbjct: 441 ADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497

Query: 527 L 527
           L
Sbjct: 498 L 498

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
             +  LD+S+N  R  +P  +   L  L  L  S NAL+ ++     N+  LQ L + NN
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNN 518

Query: 309 QLTG-EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL 354
           +L      + L   C  L  L L  NSL      +      L  +  
Sbjct: 519 RLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 63/402 (15%), Positives = 121/402 (30%), Gaps = 45/402 (11%)

Query: 17  HFKSLELLDME-CTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVH 75
               LE L ++ C+     T  L  I      +K L + +S+      K L         
Sbjct: 136 RADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193

Query: 76  LQELYIYNNDLRG----SLPWCMANMTSLRILYVSS-NQLTGSISSSPLVHLTSIEELHL 130
           L+ L  Y  +        L     N  SL  + V     L          +L       L
Sbjct: 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSL 253

Query: 131 SN--NHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
           +      +  ++L       RL + +   NE+      +  +        +L L     +
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR-------KLDLLYALLE 306

Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL---VNDSLAGPFRLPI 245
                  +    +LE ++  ++  +      L +    L+ L +    ++         +
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLV 365

Query: 246 HSH---------KRLRLLDISNNNFRGHIPVEIGDVLPGLFSL---------NISMNALD 287
                       + L  + +  ++        IG  L  L             I+   LD
Sbjct: 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425

Query: 288 GSIPSSFGNMKFLQLLDVTNN--QLTGEIPEHLAVGCVNLEYLALSN--NSLEGHMFSRN 343
             + S     K L+          LT     ++     N+ ++ L     S EG +   +
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-LMEFS 484

Query: 344 FNLTNLKWLQLEGNHFVGE-IPQSLSKCFVLEGLFLNNNSLS 384
               NL+ L++ G  F    I  +++K   L  L++     S
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 49/351 (13%), Positives = 96/351 (27%), Gaps = 52/351 (14%)

Query: 14  GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLG-------------- 59
           G P      L+          T ++  IS ++  LK +      +               
Sbjct: 82  GKPRAAMFNLIPENWG--GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD 139

Query: 60  ------TNSSKILDRGLCSLV----HLQELYIYNNDLR-------GSLPWCMANMTSLRI 102
                    S     GL S+V     ++ L +  +            L     ++  L  
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINA 162
                 +++     +   +  S+  + + +      +       +       + N +I  
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259

Query: 163 EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE 222
                  +         LS        ++FP        +  +DL +  +  E    L++
Sbjct: 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPILFP----FAAQIRKLDLLYALLETEDHCTLIQ 315

Query: 223 NNTNLESLFLVND-SLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNI 281
              NLE L   N     G   L     K+L+ L I        +  E G V         
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVL-AQYCKQLKRLRIERGADEQGMEDEEGLV--------- 365

Query: 282 SMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
                   + +     + L+ + V  + +T E  E +     NL    L  
Sbjct: 366 ----SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGS 434
           + L  N++  + P       +L+ I +  N +   +  + F  L  L  L +  N I+  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 435 LPS-CFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ 492
           LP   F  L S++ + L+ N ++  L+   F + H+L  L L  N+L          L  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 493 LSHLILGHN 501
           +  + L  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SL 335
           + +  N +    P +F   K L+ +D++NNQ++ E+      G  +L  L L  N    L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRWL 391
              +F     L +L+ L L  N  +  +     Q L     L  L L +N L  +     
Sbjct: 96  PKSLFEG---LFSLQLLLLNANK-INCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGTF 148

Query: 392 GNLTRLQHIMMPKN 405
             L  +Q + + +N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCM-ANMTSLRI 102
               L+ + LS++ +   +          L  L  L +Y N +   LP  +   + SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
           L +++N++   +       L ++  L L +N  Q
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 422 QILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
             + +  N I    P  F P   +  + LS N +  +L    F    SL +L L  N++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 481 GSISDWV-DGLSQLSHLILGHNNLEGEVPVQL-CKLNQLQLLDLSNNNLHGPIPPCFDN 537
             +   + +GL  L  L+L  N +   + V     L+ L LL L +N L       F  
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 323 VNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP----QSLSKCFVLEG 375
             +  + L  N    +    FS       L+ + L  N  + E+     Q L     L  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQ-ISELAPDAFQGLRS---LNS 84

Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGS 434
           L L  N ++ +       L  LQ +++  N +   + V+ F  L  L +L + DN +   
Sbjct: 85  LVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTI 143

Query: 435 LPSCFHPL-SIEHVHLSKN 452
               F PL +I+ +HL++N
Sbjct: 144 AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 246 HSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSS-FGNMKFLQLLD 304
             +K+LR +D+SNN     +  +    L  L SL +  N +   +P S F  +  LQLL 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 305 VTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHF 359
           +  N++   +         NL  L+L +N   ++    FS    L  ++ + L  N F
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP---LRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 18  FKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           F   + L     RI L+ + +  ++      + SL  L L  + +      + +     L
Sbjct: 52  FSPYKKL----RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG----L 103

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
             LQ L +  N +         ++ +L +L +  N+L  +I+      L +I+ +HL+ N
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

Query: 134 HF 135
            F
Sbjct: 163 PF 164

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 51/352 (14%), Positives = 105/352 (29%), Gaps = 28/352 (7%)

Query: 16  PHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVH 75
             + SL  L++ C    ++ S L+ +    P+LK L L+ +      + +L +    L  
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEE 239

Query: 76  LQELYIYNNDLRGSLPWCMANMTSLRILYVSS--NQLTGSISSSPLVHLTSIEELHLSNN 133
           L                    ++  + L   S       +   +     + +  L+LS  
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 134 HFQIPISLEPLFNHSRLKVFWA----KNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
             Q    ++ L    +L+  W     ++  +    +    L     ++          + 
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR--ELRVFPSEPFVMEPNV 357

Query: 190 VI----FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPI 245
            +              LE V     +M       +  N  N+    L       P     
Sbjct: 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP----- 412

Query: 246 HSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV 305
             +  L  LDI            I +    L  L++S    D          K +++L V
Sbjct: 413 -DYLTLEPLDIG--------FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSV 463

Query: 306 TNNQLTGEIPEHLAVGCVNLEYLALSN-NSLEGHMFSRNFNLTNLKWLQLEG 356
                +     H+  GC +L  L + +    +  + +    L  ++ L +  
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 56/347 (16%), Positives = 103/347 (29%), Gaps = 62/347 (17%)

Query: 14  GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           G PHF    L+            +++ +S S   L+ + L           + D  L  +
Sbjct: 75  GKPHFADFNLVPDGWG--GYVYPWIEAMSSSYTWLEEIRLKRMV-------VTDDCLELI 125

Query: 74  V----HLQELYIYNNDL--RGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHL----T 123
                + + L + + +      L    A   +L+ L +  + +   +S   L H     T
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYT 184

Query: 124 SIEELHLSNNHFQI-PISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSL 182
           S+  L++S    ++   +LE L                                L  L L
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCP--------------------------NLKSLKL 218

Query: 183 SSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTW-----LLENNTNLESLFLVNDSL 237
           +       +    L     LE +             +      L     L  L    D++
Sbjct: 219 NRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 238 AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNM 297
                       RL  L++S    + +  V++    P L  L +     D  +       
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 298 KFLQLLDVT---------NNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
           K L+ L V          N  LT +    +++GC  LE +      +
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 66/438 (15%), Positives = 134/438 (30%), Gaps = 63/438 (14%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS 72
           + F +FK L L    C     +T  L  I+ +  +LK L L +S +   S   L     +
Sbjct: 127 KSFKNFKVLVLSS--CEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 73  LVHLQELYIYNNDLR---GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
              L  L I          +L   +    +L+ L ++       +++  L     +EEL 
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELG 241

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNF-QLSRLSLSSGYGD 188
                                        E+  ++    S+      +L  LS       
Sbjct: 242 TGGY-----------------------TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVND-SLAGPFRLPIHS 247
             + P        L  ++LS+  +       LL     L+ L++++    AG   L    
Sbjct: 279 AYL-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307
              LR L +  +                 F +  ++   +  + S       L+ +    
Sbjct: 338 KD-LRELRVFPSEP---------------FVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381

Query: 308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGH-----------MFSRNFNLTNLKWLQLEG 356
            Q+T      +A    N+    L     +               +   +  +L+ L L G
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441

Query: 357 NHFVGEIPQSLSKCFVLEGLFLNNNSLSGM-IPRWLGNLTRLQHIMMPK-NHLEGPIPVE 414
                      +    +E L +     S + +   L     L+ + +      +  +   
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501

Query: 415 FCQLDWLQILDISDNNIS 432
             +L+ ++ L +S  ++S
Sbjct: 502 ASKLETMRSLWMSSCSVS 519

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 15/183 (8%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
            L N     L     V ++  S  +   ++    +N+++  +    +   T L+ + +  
Sbjct: 17  GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF 464
           N +    P++   L  L+ L ++ N +     +      +  + L  N L       +  
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRLKN--LNGIPSACLSRLFLDNNELR---DTDSLI 125

Query: 465 NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 524
           +  +L  L +  N+L  SI   +  LS+L  L L  N +       L +L ++  +DL+ 
Sbjct: 126 HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTG 181

Query: 525 NNL 527
              
Sbjct: 182 QKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 29/245 (11%)

Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
               L +  +  +    +   +      ++ ++     ++ +    S + +   T+++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
           HLS+N  QI   L PL + ++L+      N +   +   PS       LSRL L     +
Sbjct: 69  HLSHN--QI-SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSAC-----LSRLFLD---NN 116

Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
            +     L H  +LE + + + K+        L   + LE L L  + +       +   
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNT--GGLTRL 171

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSI--PSSFGNMKFLQLLDVT 306
           K++  +D++          E     P L+  N   +  DG    P    N        V 
Sbjct: 172 KKVNWIDLTGQK----CVNEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVL 226

Query: 307 NNQLT 311
                
Sbjct: 227 WELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 21/169 (12%)

Query: 7   NGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKIL 66
           + +    G   F +L+ L +   +I+ + S L    + +  L+ LS++ +       ++ 
Sbjct: 51  SNIQSLAGMQFFTNLKELHLSHNQIS-DLSPL----KDLTKLEELSVNRN-------RLK 98

Query: 67  DRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE 126
           +        L  L++ NN+LR +    + ++ +L IL + +N+L    S   L  L+ +E
Sbjct: 99  NLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLE 153

Query: 127 ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI-NAEITQSPSLTAPN 174
            L L  N      +   L    ++        +  N  +   P L   N
Sbjct: 154 VLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 35/213 (16%), Positives = 77/213 (36%), Gaps = 29/213 (13%)

Query: 220 LLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL 279
            ++  T +  +F            P          ++   +    +  +    L G+ + 
Sbjct: 2   SIQRPTPINQVF------------PDPGLANAVKQNLGKQSVTDLVSQKE---LSGVQNF 46

Query: 280 NISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM 339
           N   + +     +       L+ L +++NQ++ ++   L      LE L+++ N L+   
Sbjct: 47  NGDNSNI--QSLAGMQFFTNLKELHLSHNQIS-DL-SPLK-DLTKLEELSVNRNRLKN-- 99

Query: 340 FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQH 399
                    L  L L+ N        SL     LE L + NN L  ++   LG L++L+ 
Sbjct: 100 -LNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEV 154

Query: 400 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
           + +  N +     +   +L  +  +D++     
Sbjct: 155 LDLHGNEITNTGGLT--RLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 19/155 (12%)

Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 435
                  ++ + P     L       + K  +   +  +  +L  +Q  +  ++NI  SL
Sbjct: 2   SIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SL 56

Query: 436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFF-NYHSLVTLDLSYNRLNGSISDWVDGLS--Q 492
                  +++ +HLS N    Q+   +   +   L  L ++ NR    + + ++G+    
Sbjct: 57  AGMQFFTNLKELHLSHN----QISDLSPLKDLTKLEELSVNRNR----LKN-LNGIPSAC 107

Query: 493 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
           LS L L +N L       L  L  L++L + NN L
Sbjct: 108 LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 37/236 (15%), Positives = 72/236 (30%), Gaps = 30/236 (12%)

Query: 202 LEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNF 261
               +L    +         +  + +++    N ++       +     L+ L +S+N  
Sbjct: 21  AVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ- 74

Query: 262 RGHIPVEIGDV-----LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE 316
                  I D+     L  L  L+++ N L             L  L + NN+L     +
Sbjct: 75  -------ISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRD--TD 122

Query: 317 HLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGL 376
            L     NLE L++ NN L+         L+ L+ L L GN  +      L++   +  +
Sbjct: 123 SLI-HLKNLEILSIRNNKLK--SIVMLGFLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWI 177

Query: 377 FLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
            L          ++   L     +  P      P  +            +      
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS--NGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 45/268 (16%), Positives = 82/268 (30%), Gaps = 49/268 (18%)

Query: 117 SPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQ 176
            P   L +  + +L          L      S ++ F   N+ I                
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ--------------- 54

Query: 177 LSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDS 236
               SL+            +    +L+ + LSH +++   P   L++ T LE L +  + 
Sbjct: 55  ----SLAG-----------MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR 96

Query: 237 LAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGN 296
           L     L       L  L + NN  R    +     L  L  L+I  N L  SI    G 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNNKLK-SI-VMLGF 148

Query: 297 MKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEG 356
           +  L++LD+  N++T             + ++ L+              L     ++   
Sbjct: 149 LSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 357 NHFVGEIPQSLSKCFVLEGLFLNNNSLS 384
             ++   P  +S         +      
Sbjct: 206 GRWIS--PYYISNGGSYVDGCVLWELPV 231

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT---GEIPEHLAVGCVNLEYLALSNN- 333
            L +  N +    P  F ++  L+ L + +NQL      + + L      L  L L  N 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQ 99

Query: 334 --SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWL 391
              L   +F R   L +LK L +  N    E+P+ + +   L  L L+ N L  +     
Sbjct: 100 LTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 392 GNLTRLQHI 400
             L+ L H 
Sbjct: 156 DRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 422 QILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
           QIL + DN I+   P  F  L  ++ ++L  N L   L  G F +   L  LDL  N+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 481 GSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN 537
             +   V D L  L  L +  N L  E+P  + +L  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 18  FKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           F SL  L      + L ++ L  +      S+  L  L L  + L    S + DR    L
Sbjct: 60  FDSLINL----KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR----L 111

Query: 74  VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
           VHL+EL++  N L   LP  +  +T L  L +  NQL  SI       L+S+   +L  N
Sbjct: 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF----VGEIPQSLSKCFVLEGLFL 378
            N + L L +N +         +L NLK L L  N      VG +  SL++   L  L L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSLTQ---LTVLDL 95

Query: 379 NNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 438
             N L+ +       L  L+ + M  N L   +P    +L  L  L +  N +       
Sbjct: 96  GTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 439 FHPL-SIEHVHLSKN 452
           F  L S+ H +L  N
Sbjct: 155 FDRLSSLTHAYLFGN 169

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 45/329 (13%), Positives = 105/329 (31%), Gaps = 58/329 (17%)

Query: 47  SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDL--RGSLPWCMA--NMTSLRI 102
           S++  SL    + T   K +   L     ++E+ +  N +    +        +   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 103 LYVSSNQLTGSISSSP---------LVHLTSIEELHLSNNHF----QIPISLEPLFNHSR 149
              S           P         L+    +  + LS+N F    Q P+  + L  H+ 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTP 123

Query: 150 LKVFWAKNNEINAEITQ--SPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDL 207
           L+  +  NN +  +     + +L          +                    L  +  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-----------------LRSIIC 166

Query: 208 SHMKMNGEFPTWL---LENNTNLESLFLVNDSL-----AGPFRLPIHSHKRLRLLDISNN 259
              ++            +++  L ++ +V + +            +   + L++LD+ +N
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 260 NFRGHIPVEIGDVLPG---LFSLNISMNALDG----SIPSSFGNMKFLQL--LDVTNNQL 310
            F       +   L     L  L ++   L      ++  +F  ++ + L  L +  N++
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

Query: 311 TGE----IPEHLAVGCVNLEYLALSNNSL 335
             +    +   +     +L +L L+ N  
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 58/364 (15%), Positives = 113/364 (31%), Gaps = 103/364 (28%)

Query: 221 LENNTNLESLFLVNDSL----AGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVL--- 273
           L  + +++ + L  +++    A      I S K L + + S+  F G +  EI + L   
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLL 86

Query: 274 -------PGLFSLNISMNAL--DG--SIPSSFGNMKFLQLLDVTNNQLTGE--------- 313
                  P L ++ +S NA        +         L+ L + NN L  +         
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 314 ---IPEHLAVGCVNLEYLALSNNSLE-------GHMFSRNFNLTNLKWLQLEGNHF---- 359
                   A     L  +    N LE          F  +     L  +++  N      
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEG 203

Query: 360 -VGEIPQSLSKCFVLEGLFLNNNSLS--GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 416
               + + L+ C  L+ L L +N+ +  G     L          +              
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGS--SALAI-------ALKSWPN--------- 245

Query: 417 QLDWLQILDISDNNIS--GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474
               L+ L ++D  +S  G+              +          +        L TL L
Sbjct: 246 ----LRELGLNDCLLSARGA------------AAVVDA-----FSKLEN---IGLQTLRL 281

Query: 475 SYNRLNG----SISDWV-DGLSQLSHLILGHNNL--EGEVPVQLCKL----NQLQLLDLS 523
            YN +      ++   + + +  L  L L  N    E +V  ++ ++     + +L +L 
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

Query: 524 NNNL 527
           +   
Sbjct: 342 DMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 12  GQGFPHFKSLELLDMECTRIALNTSFLQIISE---SMPSLKYLSLSDSTLGTNSSKILDR 68
            + F   + L  + M    I        ++ E       LK L L D+T     S  L  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIR-PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 69  GLCSLVHLQELYIYNNDLRGSLPWCMANM------TSLRILYVSSNQLTG----SISSSP 118
            L S  +L+EL + +  L       + +         L+ L +  N++      ++ +  
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 119 LVHLTSIEELHLSNNHF 135
              +  +  L L+ N F
Sbjct: 299 DEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 67/273 (24%)

Query: 300 LQLLDVTNNQLTGEIPEHLA---VGCVNLEYLALSNNSLE-------GHMFSRNFNLTNL 349
           ++   +  + +T E  + +    +   +++ + LS N++            +   +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 350 KWLQLEGNHFVGEIP-------QSLSKCFVLEGLFLNNNSLS--GMIP--RWLGNLTRLQ 398
           ++  +       EIP       Q+L KC  L  + L++N+       P   +L   T L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF------HPLSIEHVHLSKN 452
           H+ +  N                 +   +   I+ +L          +   +  +   +N
Sbjct: 126 HLYLHNN----------------GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 453 MLHGQ--------LKRGTFFNYHSLVTLDLSYNRLN--GSISDWVDGLS---QLSHLILG 499
            L            +         L T+ +  N +   G     ++GL+   +L  L L 
Sbjct: 170 RLENGSMKEWAKTFQSHR-----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 500 HNNLEGEVPVQ-----LCKLNQLQLLDLSNNNL 527
            N     +        L     L+ L L++  L
Sbjct: 225 DNTF-THLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 26/173 (15%)

Query: 16  PHFKSLELLDMECTRI-ALNTSFLQIISESM---PSLKYLSLSDSTLGTNSSKILDRGLC 71
              +  E  D+   R+       L+++ +++   P L  + LSD+  G  + + L   L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 72  SLVHLQELYIYNNDL-------------RGSLPWCMANMTSLRILYVSSNQLT--GSIS- 115
               L+ LY++NN L               ++     N   LR +    N+L        
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 116 SSPLVHLTSIEELHLSNNHF-----QIPISLEPLFNHSRLKVFWAKNNEINAE 163
           +        +  + +  N       +  +  E L     LKV   ++N     
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHL 231

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 19  KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQE 78
             L L + E T +     F     + +P L+ ++ S++ +        +        + E
Sbjct: 35  AELRLNNNEFTVLEATGIF-----KKLPQLRKINFSNNKITDIEEGAFE----GASGVNE 85

Query: 79  LYIYNNDLRGSLPWCM-ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
           + + +N L  ++   M   + SL+ L + SN++T  + +   + L+S+  L L +N   
Sbjct: 86  ILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 422 QILDISDNNISGSLPS-CFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
             L +++N  +    +  F  L  +  ++ S N +   ++ G F     +  + L+ NRL
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 480 NGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP-CFDN 537
             ++   +  GL  L  L+L  N +          L+ ++LL L +N +   + P  FD 
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
           L ++NN F       I   LP L  +N S N +      +F     +  + +T+N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 314 IPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP----QS 366
           +   +  G  +L+ L L +N    +    F     L++++ L L  N     +      +
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 367 LSKCFVLEGLFLNNN 381
           L     L  L L  N
Sbjct: 152 LHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 225 TNLESLFLVNDSLAG-PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM 283
                L L N+               +LR ++ SNN     I     +   G+  + ++ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 284 NALDGSIPSS-FGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHM 339
           N L+ ++    F  ++ L+ L + +N++T  +     +G  ++  L+L +N   ++    
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 340 FSRNFNLTNLKWLQLEGNHF 359
           F     L +L  L L  N F
Sbjct: 149 FD---TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILG 499
           P     + L+ N        G F     L  ++ S N++   I +   +G S ++ ++L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 500 HNNLEGEVPVQLC-KLNQLQLLDLSNNNLHGPIPP-CFDNTT 539
            N LE  V  ++   L  L+ L L +N +   +    F   +
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLS 129

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 376 LFLNNNSLSGMIPR-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 434
           L LNNN  + +        L +L+ I    N +       F     +  + ++ N +  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 435 LPS-CFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLS 491
           +    F  L S++ + L  N +   +   +F    S+  L L  N++  +++    D L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 492 QLSHLILGHN 501
            LS L L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 323 VNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIP----QSLSKCFVLEGLF 377
                L L+NN       +  F  L  L+ +    N  + +I     +  S    +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASG---VNEIL 87

Query: 378 LNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLP 436
           L +N L  +  +    L  L+ +M+  N +   +  + F  L  +++L + DN I+   P
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAP 146

Query: 437 SCFHPL-SIEHVHLSKN 452
             F  L S+  ++L  N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 15/124 (12%)

Query: 18  FKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           FK L  L     +I  + + +  I E        +  + L+ + L     K+       L
Sbjct: 53  FKKLPQL----RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG----L 104

Query: 74  VHLQELYIYNNDLRGSLPWCM-ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
             L+ L + +N +   +       ++S+R+L +  NQ+T +++      L S+  L+L  
Sbjct: 105 ESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLA 162

Query: 133 NHFQ 136
           N F 
Sbjct: 163 NPFN 166

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 43/338 (12%), Positives = 100/338 (29%), Gaps = 66/338 (19%)

Query: 38  LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV-HLQELYIYNNDLRGSLPWCMAN 96
           ++  +     +  L LS + L + S+  L +   +    +  L +  N L       +  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 97  M-----TSLRILYVSSNQLTG----SISSSPLVHLTSIEELHLSNNHFQ----IPISLEP 143
           +      ++  L +S N L+      +  +      +I  L L  N F            
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 144 LFNHSRLKVFWAKNNEINAEITQ--SPSLTAPNFQLSRLSLSS-GYGD-GVIFPKFLYHQ 199
               + +     + N++  + +      L A    ++ L+L                   
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA-------- 185

Query: 200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVN--------DSLAGPFRLPIHSHKRL 251
                 +L+           L     ++ SL L            LA  F         +
Sbjct: 186 ------ELAKF---------LASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNHV 227

Query: 252 RLLDISNNNFRGHIPVEIGDVL---PGLFSLNISMNALDG-------SIPSSFGNMKFLQ 301
             L++  N   G     +  +      L ++ +  + +         ++ ++F N++ + 
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287

Query: 302 LLDVTNNQLTGE----IPEHLAVGCVNLEYLALSNNSL 335
           L+D    ++       I   +       +  +L N  L
Sbjct: 288 LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 54/276 (19%), Positives = 95/276 (34%), Gaps = 49/276 (17%)

Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVN----LEYLALSNNSLE---GHMFSR--NFNLTNLK 350
           +  LD++ N L       L     N    +  L LS NSL         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 351 WLQLEGNHF----VGEIPQSLSKC-FVLEGLFLNNNSLSGMIPRWLGNL-----TRLQHI 400
            L L GN        E+ ++L+   F +  L L  N  S                 +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 401 MMPKNHLEGPIPVEFCQL-----DWLQILDISDNNI--------SGSLPSCFHPLSIEHV 447
            +  N L      E  Q+       +  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 448 HLSKNMLHGQ----LKRGTFFNYHSLVTLDLSYNRLNGS----ISDWVDGLSQLSHLILG 499
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 500 HNNLEGEVPVQ-------LCKLNQLQLLDLSNNNLH 528
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 51/342 (14%), Positives = 95/342 (27%), Gaps = 56/342 (16%)

Query: 119 LVHLTSIEELHLSNNHFQIPISLEPLF-----NHSRLKVFWAKNNEINAEITQ--SPSLT 171
                 +  L LS N+    IS   L        + +       N +  + +      L 
Sbjct: 18  TSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 172 APNFQLSRLSLSS---GYGDGVIFPKFLYHQH-DLEYVDLSHMKMNGE----FPTWLLEN 223
           A    ++ L+LS     Y       K L      +  +DL     + +    F       
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 224 NTNLESLFLVN--------DSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPG 275
             ++ SL L          D L             +  L++  NN       E+   L  
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILA---AIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 276 ----LFSLNISMNALDGSIPSSFG-----NMKFLQLLDVTNNQLTGEIPEHLAVG---CV 323
               + SL++S N L     +            +  L++  N L G   E+L +      
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 324 NLEYLALSNNSLEG-------HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSK-----CF 371
           +L+ + L  + ++         + +   N+  +  +   G          +S        
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG 313

Query: 372 VLEGLFLNNNSLS-----GMIPRWLGNLTRLQHIMMPKNHLE 408
             +   L N  L            L     L+  +     L 
Sbjct: 314 KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 4e-09
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 68  RGLCSLVHLQELYIYNNDLRGSLPW-CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE 126
             L    +L ELYI N      L    +  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 127 ELHLSNNHFQIPISLEP-LFNHSRLKVFWAKNNEIN 161
            L+LS N  +   SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRW-LGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420
           +    L     L  L++ N      +    L  L  L+++ + K+ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 421 LQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLH 455
           L  L++S N +          LS++ + LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 468 SLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNN 526
           +L  L +   +    +      GL +L +L +  + L    P       +L  L+LS N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 527 LHGPIPPCFDNTTLHE 542
           L           +L E
Sbjct: 92  LESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 416 CQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS 475
           C       L  + +    SL       ++  +++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 476 YNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            + L   ++        +LS L L  N LE  +  +  +   LQ L LS N LH
Sbjct: 65  KSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 7/98 (7%)

Query: 289 SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFN 345
                    + L  L + N Q    +      G   L  L +  +    +    F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
              L  L L  N     +     +   L+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308
           + L  L I N     H+ +     L  L +L I  + L    P +F     L  L+++ N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 309 QLTGEIPEHLAVGCVNLEYLALSNNSL 335
            L   +      G ++L+ L LS N L
Sbjct: 91  ALE-SLSWKTVQG-LSLQELVLSGNPL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 7   NGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKIL 66
             + +   + +      LD+   +I      ++ +  ++     +  SD     N  + L
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD-----NEIRKL 57

Query: 67  DRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIE 126
           D G   L  L+ L + NN +          +  L  L +++N L       PL  L S+ 
Sbjct: 58  D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 127 ELHLSNNHFQIPISLEPLFNHSRLKVFWA 155
            L +  N    P++ +    H RL V + 
Sbjct: 117 YLCILRN----PVTNKK---HYRLYVIYK 138

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 43  ESMPSLKYLSLSDSTLGTNSSKILDRGLCS-LVHLQELYIYNNDLRGSLPWCMANMTSLR 101
            +    + L L     G     I    L + L     +   +N++R  L      +  L+
Sbjct: 16  TNAVRDRELDLR----GYKIPVI--ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLK 67

Query: 102 ILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI 160
            L V++N++   I       L  + EL L+NN       L+PL +   L       N +
Sbjct: 68  TLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 423 ILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482
           ++ ++   I        + +    + L    +   +             +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
           +  +   L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
           N    + L L G   +  I    +     + +  ++N +  +       L RL+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNN 73

Query: 405 NHLEGPIPVEFCQLDWLQILDISDNNIS 432
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 249 KRLRLLDISNNNFRGHIPV--EIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
            R R LD+        IPV   +G  L    +++ S N +   +   F  ++ L+ L V 
Sbjct: 19  VRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVN 72

Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEG-HMFSRNFNLTNLKWLQLEGN 357
           NN++   I E L     +L  L L+NNSL          +L +L +L +  N
Sbjct: 73  NNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 28/136 (20%)

Query: 391 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
             N  R + + +    +   I      LD    +D SDN I            ++   L 
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR----------KLDGFPLL 63

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510
           +                 L TL ++ NR+          L  L+ LIL +N+L     + 
Sbjct: 64  RR----------------LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 107

Query: 511 -LCKLNQLQLLDLSNN 525
            L  L  L  L +  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 221 LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
             N      L L    +     L   +  +   +D S+N  R    ++   +L  L +L 
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLT--GEIPEHLAVGCVNLEYLALSNNSLEGH 338
           ++ N +          +  L  L +TNN L   G++ + LA    +L YL +  N +   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 339 MFSRNFNLTNLKWLQ 353
              R + +  +  ++
Sbjct: 129 KHYRLYVIYKVPQVR 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 10  LRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRG 69
           LR +     K L L +       L       +++    L++LS  +  L    + I    
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEG-----LTDEFEELEFLSTINVGL----TSI--AN 59

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           L  L  L++L + +N + G L        +L  L +S N++    +  PL  L +++ L 
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWA 155
           L N      ++        R  VF  
Sbjct: 120 LFNC----EVTNLN---DYRENVFKL 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 10/125 (8%)

Query: 38  LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR--GSLPWCMA 95
           L++ + +   +K L L +S   +N  K+          L+ L   N  L    +LP    
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLTSIANLP---- 61

Query: 96  NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWA 155
            +  L+ L +S N+++            ++  L+LS N  +   ++EPL     LK    
Sbjct: 62  KLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 156 KNNEI 160
            N E+
Sbjct: 121 FNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 27/110 (24%)

Query: 417 QLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY 476
           + + L+ L   +  ++          SI ++                     L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLPKLNK----------------LKKLELSD 73

Query: 477 NRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPVQLCKLNQLQLLDLSNN 525
           NR++G +    +    L+HL L  N ++       L KL  L+ LDL N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 222 ENNTNLESLFL-VNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280
              ++++ L L  + S  G         + L  L   N        +     L  L  L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLE 70

Query: 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG-EIPEHLAVGCVNLEYLALSNNSLEGHM 339
           +S N + G +         L  L+++ N++      E L     NL+ L L N  +    
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLN 129

Query: 340 FSRNFNLTNLKWLQ 353
             R      L  L 
Sbjct: 130 DYRENVFKLLPQLT 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 499
            P  ++ + L  +  +     G    +  L  L      L  SI++ +  L++L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 500 HNNLEGEVPVQLCKLNQLQLLDLSNNNL 527
            N + G + V   K   L  L+LS N +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 43  ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
            ++ + K+L+LS + +     KI    L  + +L+ L +  N ++  +    A   +L  
Sbjct: 45  STLKACKHLALSTNNI----EKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINA 162
           L++S NQ+    S S +  L ++  L++SNN       ++ L    +L+      N +  
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 163 EITQSPSLT 171
           +  ++ + +
Sbjct: 155 DYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 17/127 (13%)

Query: 41  ISESMPSLKYLSLSDSTLGTNSSKI--LDRGLCSLVHLQELYIYNN---DLRGSLPWCMA 95
           I E   S+         L      I  +D  L +L   + L +  N    +       ++
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LS 67

Query: 96  NMTSLRILYVSSNQLTGSISSSPLVHLT-SIEELHLSNNHFQIPISLEPLFNHSRLKVFW 154
            M +LRIL +  N +   I    L  +  ++EEL +S N      SL  +     L+V +
Sbjct: 68  GMENLRILSLGRNLIK-KI--ENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLY 121

Query: 155 AKNNEIN 161
             NN+I 
Sbjct: 122 MSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 22/141 (15%)

Query: 17  HFKSLELLDMECTRIALNTSFLQIIS--ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
             K+ + L +    I       + IS    M +L+ LSL       N  K ++       
Sbjct: 46  TLKACKHLALSTNNI-------EKISSLSGMENLRILSLGR-----NLIKKIENLDAVAD 93

Query: 75  HLQELYIYNN---DLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
            L+EL+I  N    L G     +  + +LR+LY+S+N++T       L  L  +E+L L+
Sbjct: 94  TLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

Query: 132 NNHFQIPISLEPLFNHSRLKV 152
            N            +  R++V
Sbjct: 149 GNPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 49/195 (25%)

Query: 343 NFNLTNLKWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM 401
           +   T  + ++L G    + ++  +LS     + L L+ N++  +    L  +  L+ + 
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILS 76

Query: 402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRG 461
           + +N ++  I       D L+ L IS N I+          S+  +              
Sbjct: 77  LGRNLIKK-IENLDAVADTLEELWISYNQIA----------SLSGIE------------- 112

Query: 462 TFFNYHSLVTLDLSYNRLNGSISDWVD-----GLSQLSHLILGHNNLEGEVPVQ------ 510
                 +L  L +S N+    I++W +      L +L  L+L  N L  +          
Sbjct: 113 ---KLVNLRVLYMSNNK----ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

Query: 511 ----LCKLNQLQLLD 521
               + +L  L+ LD
Sbjct: 166 RIEVVKRLPNLKKLD 180

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---S 334
            L++  N+L       F  +  L  L +  N+L   +P  +     +L YL LS N   S
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS-----KCFVLEGLFLNNNSLSGMIPR 389
           L   +F +   LT LK L L  N       QSL      K   L+ L L  N L   +P 
Sbjct: 91  LPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPD 141

Query: 390 -WLGNLTRLQHIMMPKN 405
                LT LQ+I +  N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLP-WCMANMTSLRI 102
            + SL  L L  + L +  + + ++    L  L  L +  N L+ SLP      +T L+ 
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNK----LTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKE 104

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ-IP 138
           L +++NQL  S+       LT +++L L  N  + +P
Sbjct: 105 LALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 422 QILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
             LD+  N++       F  L+ +  ++L  N L   L  G F    SL  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 481 GSISDWV-DGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNNLHGPIPPCFDN 537
            S+ + V D L+QL  L L  N L+  +P  +  KL QL+ L L  N L       FD 
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 10  LRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRG 69
           LR +     + L L + +     +       ++    +L++LSL +  L      +    
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEG-----LTAEFVNLEFLSLINVGL----ISV--SN 66

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
           L  L  L++L +  N + G L      + +L  L +S N+L    +  PL  L  ++ L 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFW 154
           L N      ++        R  VF 
Sbjct: 127 LFNC----EVTNLN---DYRESVFK 144

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 38  LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR--GSLPWCMA 95
           L++ + +  +++ L L +    +N  KI        V+L+ L + N  L    +LP    
Sbjct: 16  LELRNRTPAAVRELVLDNC--KSNDGKIEG-LTAEFVNLEFLSLINVGLISVSNLP---- 68

Query: 96  NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWA 155
            +  L+ L +S N++           L ++  L+LS N  +   +LEPL     LK    
Sbjct: 69  KLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 156 KNNEI 160
            N E+
Sbjct: 128 FNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 342 RNFNLTNLKWLQLEGNHF-VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHI 400
           RN     ++ L L+      G+I    ++   LE L L N  L  +    L  L +L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKL 76

Query: 401 MMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432
            + +N + G + +   +L  L  L++S N + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 423 ILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482
           +LD   +N           +++E + L    L              L  L+LS NR+ G 
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIFGG 86

Query: 483 ISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNN 525
           +    + L  L+HL L  N L+    ++ L KL  L+ LDL N 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 223 NNTNLESLFLVNDSLAGPFRLPIHSH-KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNI 281
               +  L L N          + +    L  L + N        V     LP L  L +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 282 SMNALDGSIPSSFGNMKFLQLLDVTNNQLT--GEIPEHLAVGCVNLEYLALSNNSLEGHM 339
           S N + G +      +  L  L+++ N+L     + E L      L+ L L N  +    
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNCEVTNLN 136

Query: 340 FSRNFNLTNLKWLQ 353
             R      L  L 
Sbjct: 137 DYRESVFKLLPQLT 150

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 34/180 (18%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---S 334
            L++    L     ++F  +  L  L++  NQL   +   +      L  L L+NN   S
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLAS 97

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
           L   +F     LT L  L L GN       +SL       G+F                L
Sbjct: 98  LPLGVFDH---LTQLDKLYLGGNQL-----KSLP-----SGVF--------------DRL 130

Query: 395 TRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKN 452
           T+L+ + +  N L+  IP   F +L  LQ L +S N +       F  L  ++ + L  N
Sbjct: 131 TKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 45/166 (27%), Positives = 64/166 (38%), Gaps = 28/166 (16%)

Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
           E L L +  L+ +       LT+L  + +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQ 492
           SLP                        G F +   L  L L  N+L  S+   V D L++
Sbjct: 97  SLPL-----------------------GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 493 LSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNNLHGPIPPCFDN 537
           L  L L  N L+  +P     KL  LQ L LS N L       FD 
Sbjct: 133 LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 15  FPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLV 74
           F     L  L +   ++    S    + + +  L  L L  + L +  S + DR    L 
Sbjct: 79  FDDLTELGTLGLANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LT 131

Query: 75  HLQELYIYNNDLRGSLPW-CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
            L+EL +  N L+ S+P      +T+L+ L +S+NQL  S+       L  ++ + L  N
Sbjct: 132 KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

Query: 134 HF 135
            F
Sbjct: 190 QF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)

Query: 323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV---GEIPQSLSKCFVLEGLFLN 379
            + E L L +  L     +    LT L WL L+ N        +   L++   L  L L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE---LGTLGLA 91

Query: 380 NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-C 438
           NN L+ +      +LT+L  + +  N L+      F +L  L+ L ++ N +  S+P+  
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150

Query: 439 FHPLS-IEHVHLSKNMLHGQLK---RGTFFNYHSLVTLDLSYN 477
           F  L+ ++ + LS N    QL+    G F     L T+ L  N
Sbjct: 151 FDKLTNLQTLSLSTN----QLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 18  FKSLELLDMECTRIALNTSFLQIISE----SMPSLKYLSLSDSTLGTNSSKILDRGLCSL 73
           F+ L  L    T + L+ + LQ +S      +  L  L L+++ L +    + D     L
Sbjct: 55  FRGLTKL----TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH----L 106

Query: 74  VHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
             L +LY+  N L+ SLP      +T L+ L +++NQL  SI +     LT+++ L LS 
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLST 164

Query: 133 NHFQIPISLEPLFNHSRLKVFWAKNN 158
           N  Q  +         +L+      N
Sbjct: 165 NQLQ-SVPHGAFDRLGKLQTITLFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILG 499
           P  +  ++L  N     L      NY  L  +DLS NR++ ++S+     ++QL  LIL 
Sbjct: 30  PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86

Query: 500 HNNLEGEVPVQLC-KLNQLQLLDLSNNNL 527
           +N L   +P +    L  L+LL L  N++
Sbjct: 87  YNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---S 334
            L +  N     +P    N K L L+D++NN+++  +          L  L LS N    
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQ----SLSKCFVLEGLFLNNN 381
           +    F     L +L+ L L GN  +  +P+     LS    L  L +  N
Sbjct: 93  IPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSA---LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 58  LGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTGSISS 116
           L  N   ++ + L +  HL  + + NN +  +L     +NMT L  L +S N+L   I  
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPP 95

Query: 117 SPLVHLTSIEELHLSNNHFQ-IP 138
                L S+  L L  N    +P
Sbjct: 96  RTFDGLKSLRLLSLHGNDISVVP 118

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 12/255 (4%)

Query: 153 FWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKM 212
            W   +     +    +    +  +        + D  +   F   +  ++++DLS+  +
Sbjct: 48  LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVI 105

Query: 213 NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISN-NNFRGHIPVEIGD 271
                  +L   + L++L L    L+ P    +  +  L  L++S  + F       +  
Sbjct: 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165

Query: 272 VLPGLFSLNIS------MNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNL 325
               L  LN+S         +  ++      +  L L     N L       L   C NL
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-LQKSDLSTLVRRCPNL 224

Query: 326 EYLALSN-NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI-PQSLSKCFVLEGLFLNNNSL 383
            +L LS+   L+   F   F L  L+ L L   + +       L +   L+ L +     
Sbjct: 225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 284

Query: 384 SGMIPRWLGNLTRLQ 398
            G +      L  LQ
Sbjct: 285 DGTLQLLKEALPHLQ 299

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILG 499
           PL    + L+ N L      G F     LV L+L  N+L   I     +G S +  L LG
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 500 HNNLEGEVPVQLC-KLNQLQLLDLSNNNLHGPIPP-CFDN 537
            N ++ E+  ++   L+QL+ L+L +N +   + P  F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 20/115 (17%)

Query: 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWLQLEGN 357
             L + +N+L     + L     +L  L L  N    +E + F      ++++ LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 358 HFVGEIPQ----SLSKCFVLEGLFLNNNSLSGMIPRWLG---NLTRLQHIMMPKN 405
               EI       L +   L+ L L +N +S  +    G   +L  L  + +  N
Sbjct: 89  KI-KEISNKMFLGLHQ---LKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 12/118 (10%)

Query: 19  KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQE 78
             L L D E  RI+ +  F       +P L  L L  + L        +       H+QE
Sbjct: 32  TELLLNDNELGRISSDGLF-----GRLPHLVKLELKRNQLTGIEPNAFEG----ASHIQE 82

Query: 79  LYIYNNDLRGSLPWCM-ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
           L +  N ++  +   M   +  L+ L +  NQ++  +      HL S+  L+L++N F
Sbjct: 83  LQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 11/111 (9%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSS-FGNMKFLQLLDVTNNQLTG 312
           L +++N         +   LP L  L +  N L   I  + F     +Q L +  N++  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 313 EIPEHLAVGCVNLEYLALSNNSL----EGHMFSRNFNLTNLKWLQLEGNHF 359
           EI   + +G   L+ L L +N +     G  F    +L +L  L L  N F
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPG-SFE---HLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 72  SLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
            L HL +L +  N L G  P      + ++ L +  N++   IS+   + L  ++ L+L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110

Query: 132 NNHFQ-IP 138
           +N    + 
Sbjct: 111 DNQISCVM 118

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 52/188 (27%), Positives = 76/188 (40%), Gaps = 30/188 (15%)

Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
            +++ +   N  +       I     +R L +  N     I       L  L  L ++ N
Sbjct: 41  NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISA--LKELTNLTYLILTGN 95

Query: 285 ALDGSIPSS-FGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMF 340
            L  S+P+  F  +  L+ L +  NQL   +P+ +     NL YL L++N   SL   +F
Sbjct: 96  QL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153

Query: 341 SRNFNLTNLKWLQLEGNHFVGEIPQSLS-----KCFVLEGLFLNNNSLSGMIPRWLG--- 392
            +   LTNL  L L  N       QSL      K   L+ L L  N L   +P   G   
Sbjct: 154 DK---LTNLTELDLSYNQL-----QSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFD 202

Query: 393 NLTRLQHI 400
            LT LQ+I
Sbjct: 203 RLTSLQYI 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 16/161 (9%)

Query: 373 LEGLFLNNNSLSGM--IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 430
           ++ +  NN+ +  +  I      L  ++++ +  N L   I     +L  L  L ++ N 
Sbjct: 43  IDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQ 96

Query: 431 ISGSLPS-CFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV- 487
           +  SLP+  F  L+ ++ + L +N L   L  G F    +L  L+L++N+L  S+   V 
Sbjct: 97  LQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVF 153

Query: 488 DGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNNL 527
           D L+ L+ L L +N L+  +P  +  KL QL+ L L  N L
Sbjct: 154 DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 16/126 (12%)

Query: 14  GFPHFKSLELLDMECTRIALNTSFLQIIS--ESMPSLKYLSLSDSTLGTNSSKILDRGLC 71
           G  +  ++  L        L  + L  IS  + + +L YL L+ + L +  + + D+   
Sbjct: 58  GIQYLPNVRYLA-------LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDK--- 107

Query: 72  SLVHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHL 130
            L +L+EL +  N L+ SLP      +T+L  L ++ NQL  S+       LT++ EL L
Sbjct: 108 -LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDL 164

Query: 131 SNNHFQ 136
           S N  Q
Sbjct: 165 SYNQLQ 170

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 46  PSLKYLSLSDS-TLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM----TSL 100
           P L+ ++L++   +   + K     L +  ++++  I        + + +A M     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 101 RILYVSSNQLTG----SISSSPLVHLTSIEELHLSNNHFQI 137
           + L V SN ++G    ++  + L   TS+ EL + N    +
Sbjct: 96  KSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 59/478 (12%), Positives = 134/478 (28%), Gaps = 163/478 (34%)

Query: 158 NEINAEITQSPSLTAPNF--QLSRLSLSSGYGDGVIFPKF--------------LYHQHD 201
           + I  E  + PS+    +  Q  RL     Y D  +F K+              L     
Sbjct: 96  SPIKTE-QRQPSMMTRMYIEQRDRL-----YNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 202 LEYVDLSHMKMNGEFPTWL-LE--NNTNLESLFLVNDSLAGPFR---LPIHSHKRLRLLD 255
            + V +  +  +G+  TW+ L+   +  ++            F+   L + +      + 
Sbjct: 150 AKNVLIDGVLGSGK--TWVALDVCLSYKVQCKM--------DFKIFWLNLKNCNSPETVL 199

Query: 256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF----LQLLDVTNNQLT 311
                    I            ++ + ++++   +     +  +    L LL+V N    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--- 256

Query: 312 GEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCF 371
            +      + C  L             + +R   +T+        +  +     +L+   
Sbjct: 257 -KAWNAFNLSCKIL-------------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 372 VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI 431
           V   L L           +L               L    P E                 
Sbjct: 303 VKS-LLLK----------YLD---------CRPQDL----PREVLTT------------- 325

Query: 432 SGSLPSCFHPLSIEHVHLSKNMLHGQLKRG--TFFNYHSLVTLDLSYNRLNGSISDWVDG 489
                   +P  +       +++   ++ G  T+ N+       ++ ++L   I   ++ 
Sbjct: 326 --------NPRRL-------SIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNV 365

Query: 490 LS---------QLSHL------------ILGHNNLEGEVPVQLCKLNQLQLLDLSNNN-- 526
           L          +LS              ++  + ++ +V V + KL++  L++       
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 527 --LHGPI----PPCFDNTTLH----ESY-------SNSSSPNKQFE-IFFFIQGPQGH 566
             +            +   LH    + Y       S+   P    +  +  I    GH
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GH 479

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 50/311 (16%), Positives = 91/311 (29%), Gaps = 97/311 (31%)

Query: 19  KSLELLDMECTRIALNTSFLQII-SESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQ 77
           K+    ++ C +I L T F Q+    S  +  ++SL   ++     ++    L       
Sbjct: 257 KAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKY--- 310

Query: 78  ELYIYNNDLR----GSLPWCMA---------NMTSLRILYVSSNQLTGSISSSPLVHLTS 124
            L     DL      + P  ++           T     +V+ ++LT  I SS L  L  
Sbjct: 311 -LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEP 368

Query: 125 IE------ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEIT----QSPSLTAPN 174
            E       L +      IP  L        L + W    + +  +        SL    
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTIL--------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 175 FQLSRLSLSSGY------------------------------------GDGVIFPKFLYH 198
            + S +S+ S Y                                     D   +    +H
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 199 QHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL----VNDSLAGPFRLPIHSHKRLRLL 254
             ++E+ +   +     F    L    +    FL     +DS A      I +     L 
Sbjct: 481 LKNIEHPERMTL-----FRMVFL----DFR--FLEQKIRHDSTAWNASGSILN----TLQ 525

Query: 255 DISNNNFRGHI 265
            +    ++ +I
Sbjct: 526 QL--KFYKPYI 534

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 19/188 (10%)

Query: 200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNN 259
            D+++ +     +     + +L+    L +L +          +       L+ L+I + 
Sbjct: 147 GDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISG 203

Query: 260 NFRGHIPVEIGDV-LPGLFSLNISMNA----LDGSIPS-----SFGNMKFLQLLDVTNNQ 309
                +  +I    LP L  L + +       DG +       S      L+ L + + +
Sbjct: 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 310 LTGEIPEHLAVGCV--NLEYLALSNNSL--EG--HMFSRNFNLTNLKWLQLEGNHFVGEI 363
               + E      +   LE + +S   L  EG   +      + +LK++ ++ N+   E+
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 364 PQSLSKCF 371
            + L K  
Sbjct: 324 KKELQKSL 331

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 38  LQIISESMPSLKYLSLSDS-TLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMAN 96
           +  + E    LK +++++   +     + L    C+  H+++  + N  +  S    +  
Sbjct: 33  INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92

Query: 97  M----TSLRILYVSSNQLTG----SISSSPLVHLTSIEELHLSNNHFQI 137
           +     SLR+L V SN LT      +  S  +   SI E    N    +
Sbjct: 93  LIETSPSLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQRQSV 140

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 15/139 (10%)

Query: 39  QIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM- 97
            ++      +  L LS++ L      +L  GL     +  L + +  L       +A   
Sbjct: 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207

Query: 98  ---TSLRILYVSSNQLTGS----ISSSPLVHLTSIEELHLSNNHFQ------IPISLEPL 144
                L+ L V+ N    +    ++ +      S+E LHL  N         +       
Sbjct: 208 DRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266

Query: 145 FNHSRLKVFWAKNNEINAE 163
              +R+ V   +   ++  
Sbjct: 267 EGGARVVVSLTEGTAVSEY 285

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 44  SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCM-ANMTSLRI 102
            +  L  LSLS + + +    + D+    L  L  LY++ N L+ SLP  +   +T L+ 
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDK----LTKLTILYLHENKLQ-SLPNGVFDKLTQLKE 104

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
           L + +NQL  S+       LTS++++ L  N
Sbjct: 105 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	590
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.35

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.7e-64  Score=552.34  Aligned_cols=557  Identities=31%  Similarity=0.413  Sum_probs=386.5

Q ss_pred             CCCCCCCCCeEeCcCCcCccccccch--HhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCC
Q 007762           14 GFPHFKSLELLDMECTRIALNTSFLQ--IISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLP   91 (590)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~   91 (590)
                      .|+++++|++|++++|  .+.+.+|.  .+. .+++|++|++++|.+.+   .++...+.++++|++|++++|.+++..+
T Consensus        95 ~~~~l~~L~~L~Ls~n--~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  168 (768)
T 3rgz_A           95 GFKCSASLTSLDLSRN--SLSGPVTTLTSLG-SCSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANV  168 (768)
T ss_dssp             CCCCCTTCCEEECCSS--EEEEEGGGGGGGG-GCTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETH
T ss_pred             hhccCCCCCEEECCCC--cCCCcCCChHHHh-CCCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCC
Confidence            5666666666666666  55555555  555 66666666666666544   3333333555556666665555554444


Q ss_pred             cc---ccC----------------------CCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCcccccc
Q 007762           92 WC---MAN----------------------MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFN  146 (590)
Q Consensus        92 ~~---~~~----------------------l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~  146 (590)
                      ..   +.+                      +++|++|++++|.+++.++.  +.++++|++|++++|.+.+.++ ..+..
T Consensus       169 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~  245 (768)
T 3rgz_A          169 VGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAIST  245 (768)
T ss_dssp             HHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTT
T ss_pred             hhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhc
Confidence            33   344                      44445555555544433332  4555555555555555543222 34455


Q ss_pred             CCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCC-CcccEEEcCCCcCccccchHHhhcCC
Q 007762          147 HSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQ-HDLEYVDLSHMKMNGEFPTWLLENNT  225 (590)
Q Consensus       147 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~~~~~l~  225 (590)
                      +++|+.|++++|.+.+.....     ...+|++|++ ..+.+.+.+|..+... ++|++|++++|.+.+.+|..+ ..++
T Consensus       246 l~~L~~L~Ls~n~l~~~~~~~-----~l~~L~~L~L-~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~  318 (768)
T 3rgz_A          246 CTELKLLNISSNQFVGPIPPL-----PLKSLQYLSL-AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCS  318 (768)
T ss_dssp             CSSCCEEECCSSCCEESCCCC-----CCTTCCEEEC-CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCT
T ss_pred             CCCCCEEECCCCcccCccCcc-----ccCCCCEEEC-cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCC
Confidence            555555555555554332221     2336777777 5666666666666553 777777777777776666664 6777


Q ss_pred             CCcEEEccCCCCCCCCcCC-CCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCC--CCCCcE
Q 007762          226 NLESLFLVNDSLAGPFRLP-IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGN--MKFLQL  302 (590)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--l~~L~~  302 (590)
                      +|+.|++++|.+.+.++.. +..+++|++|++++|.+++.+|..+....++|++|++++|.+++.+|..+..  +++|++
T Consensus       319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~  398 (768)
T 3rgz_A          319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE  398 (768)
T ss_dssp             TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred             CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence            7777777777776555543 6677777777777777776777776663347777777777777766666665  677888


Q ss_pred             EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCc
Q 007762          303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS  382 (590)
Q Consensus       303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  382 (590)
                      |++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       399 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence            88888887766666654 47888888888888877777778888888888888888887788888888888888888888


Q ss_pred             ccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCcc
Q 007762          383 LSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRG  461 (590)
Q Consensus       383 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~  461 (590)
                      +++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+. +++|+.|++++|.+.+.+|..
T Consensus       478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence            8877888888888888888888888878888888888888888888888777776554 678888888888877666643


Q ss_pred             c---------------------------------------------------------------------cccCCCCcEE
Q 007762          462 T---------------------------------------------------------------------FFNYHSLVTL  472 (590)
Q Consensus       462 ~---------------------------------------------------------------------~~~~~~L~~L  472 (590)
                      .                                                                     +..+++|+.|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L  637 (768)
T 3rgz_A          558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL  637 (768)
T ss_dssp             GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred             HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence            2                                                                     3345778999


Q ss_pred             EcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccc----cccCCC
Q 007762          473 DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE----SYSNSS  548 (590)
Q Consensus       473 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~----~~~~~~  548 (590)
                      |+++|++++.+|..++.+++|++|+|++|++++.+|..+..+++|+.||+++|+++|.+|..+..++.++    ++|..+
T Consensus       638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998887444    445555


Q ss_pred             CCCCccce--eccccCCCCCCCCCcccccCCCCCCCCcccc
Q 007762          549 SPNKQFEI--FFFIQGPQGHPRLATLVMNQHSPAQGHEDLE  587 (590)
Q Consensus       549 ~~~~~~~~--~~~~~~~~~np~~~~~~~~~~~~~~~~~~~~  587 (590)
                      |++|....  .+...+|.|||.+||..+...+...+.+..+
T Consensus       718 g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~  758 (768)
T 3rgz_A          718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH  758 (768)
T ss_dssp             EECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------
T ss_pred             ccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCC
Confidence            55554322  2345678999999998877544444444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-60  Score=523.81  Aligned_cols=514  Identities=30%  Similarity=0.411  Sum_probs=439.4

Q ss_pred             CCccccccCCCCCCCCCCCCeEeCcCCcCccccccchH---hhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEE
Q 007762            3 SYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQI---ISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQEL   79 (590)
Q Consensus         3 ~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L   79 (590)
                      +|.+.|.+|...+.++++|++|++++|  .+.+..+..   +. .+++|++|++++|.+.+   ..   .+..+++|++|
T Consensus       135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~---~~---~~~~l~~L~~L  205 (768)
T 3rgz_A          135 SNTLDFPGKVSGGLKLNSLEVLDLSAN--SISGANVVGWVLSD-GCGELKHLAISGNKISG---DV---DVSRCVNLEFL  205 (768)
T ss_dssp             SSEEECCSSCCSCCCCTTCSEEECCSS--CCEEETHHHHHHTT-CCTTCCEEECCSSEEES---CC---BCTTCTTCCEE
T ss_pred             CCccCCcCCHHHhccCCCCCEEECCCC--ccCCcCChhhhhhc-cCCCCCEEECCCCcccc---cC---CcccCCcCCEE
Confidence            444444444333344455555555555  333333333   23 55666666666665543   22   23678899999


Q ss_pred             EeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCc
Q 007762           80 YIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNE  159 (590)
Q Consensus        80 ~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~  159 (590)
                      ++++|.+.+..|. +.++++|++|++++|.+++.++. .+.++++|++|++++|.+.+.++..   .+++|+.|++++|.
T Consensus       206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK  280 (768)
T ss_dssp             ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSE
T ss_pred             ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCc
Confidence            9999999877776 99999999999999999877776 7899999999999999998666543   88999999999999


Q ss_pred             ccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC
Q 007762          160 INAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG  239 (590)
Q Consensus       160 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  239 (590)
                      +.+..+.....  ...+|+.|++ ..+.+.+..|..+..+++|++|++++|.+.+.+|...+..+++|+.|++++|.+.+
T Consensus       281 l~~~ip~~~~~--~~~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~  357 (768)
T 3rgz_A          281 FTGEIPDFLSG--ACDTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG  357 (768)
T ss_dssp             EEESCCCCSCT--TCTTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred             cCCccCHHHHh--hcCcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence            87655443221  1258999999 88888889999999999999999999999989998867899999999999999998


Q ss_pred             CCcCCCCCCC-cccEEEccCCcCCCCCchhhhhc-CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchh
Q 007762          240 PFRLPIHSHK-RLRLLDISNNNFRGHIPVEIGDV-LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH  317 (590)
Q Consensus       240 ~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  317 (590)
                      ..+..+..++ +|+.|++++|.+++.++..+... +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..
T Consensus       358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  437 (768)
T 3rgz_A          358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS  437 (768)
T ss_dssp             CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence            8888888887 99999999999988787776532 578999999999999999999999999999999999999888877


Q ss_pred             hhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCc
Q 007762          318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL  397 (590)
Q Consensus       318 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L  397 (590)
                      +. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.+|..+..+++|
T Consensus       438 l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          438 LG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             Hh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            65 59999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-------------------------------------
Q 007762          398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-------------------------------------  440 (590)
Q Consensus       398 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------------------  440 (590)
                      +.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+.                                     
T Consensus       517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF  596 (768)
T ss_dssp             CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred             CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999876664321                                     


Q ss_pred             ----------------------------------CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccc
Q 007762          441 ----------------------------------PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW  486 (590)
Q Consensus       441 ----------------------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  486 (590)
                                                        +.+|+.|++++|.+++.+|.. +..+++|+.|+|++|.+++.+|..
T Consensus       597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChH
Confidence                                              356899999999999999987 999999999999999999999999


Q ss_pred             ccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcccc
Q 007762          487 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF  535 (590)
Q Consensus       487 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  535 (590)
                      ++.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..-
T Consensus       676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence            9999999999999999999999999999999999999999999999763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.9e-54  Score=468.85  Aligned_cols=545  Identities=21%  Similarity=0.197  Sum_probs=415.2

Q ss_pred             CCCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEE
Q 007762            1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELY   80 (590)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~   80 (590)
                      +++|++.+..+ .+|+++++|++|++++|  .+.+..|..+. .+++|++|++++|.++.    +++.+|.++++|++|+
T Consensus        32 Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           32 LTHNQLRRLPA-ANFTRYSQLTSLDVGFN--TISKLEPELCQ-KLPMLKVLNLQHNELSQ----LSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CCSSCCCCCCG-GGGGGGTTCSEEECCSS--CCCCCCTTHHH-HCTTCCEEECCSSCCCC----CCTTTTTTCTTCSEEE
T ss_pred             CCCCCCCCcCH-HHHhCCCcCcEEECCCC--ccCccCHHHHh-cccCcCEEECCCCccCc----cChhhhccCCCCCEEE
Confidence            35666666444 67888889999999888  55666677776 88889999998888865    6766788888899999


Q ss_pred             eecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCcccc--ccCCCccEEEccCC
Q 007762           81 IYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPL--FNHSRLKVFWAKNN  158 (590)
Q Consensus        81 L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l--~~l~~L~~l~l~~~  158 (590)
                      +++|.+.+..+..|.++++|++|++++|.+++..+. .+.++++|++|++++|.+.+. +...+  ..+++|+.|++++|
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCC
Confidence            998888866667888888999999998888744443 678888899999988887633 22333  35678888888888


Q ss_pred             cccccccCCCCCC------------------------CCCcccceEeccCCCCCCCcCChhccCCCc--ccEEEcCCCcC
Q 007762          159 EINAEITQSPSLT------------------------APNFQLSRLSLSSGYGDGVIFPKFLYHQHD--LEYVDLSHMKM  212 (590)
Q Consensus       159 ~~~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~--L~~L~ls~~~~  212 (590)
                      .+...........                        ....+++.|++ ..+.+.+..+..+..++.  |++|++++|.+
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L-~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL-SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC-TTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc-cCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            7765433211100                        01146778888 677777777777777654  99999999988


Q ss_pred             ccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCC-----Cch---hhhhcCCCCcEEEccCc
Q 007762          213 NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGH-----IPV---EIGDVLPGLFSLNISMN  284 (590)
Q Consensus       213 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~---~~~~~~~~L~~L~L~~n  284 (590)
                      .+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|+++++...+.     +|.   ..+..+++|++|++++|
T Consensus       261 ~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n  339 (680)
T 1ziw_A          261 NVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN  339 (680)
T ss_dssp             CEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred             CccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence            7555544 47888999999999988887777888889999999987654432     221   12234788999999999


Q ss_pred             eecccCCcccCCCCCCcEEEccCccccc-ccchhhhcC--CCCCcEEEccCCcCCCccCccccCccccCceeccCccccc
Q 007762          285 ALDGSIPSSFGNMKFLQLLDVTNNQLTG-EIPEHLAVG--CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG  361 (590)
Q Consensus       285 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~  361 (590)
                      .+++..+..+..+++|++|++++|.+.. .++...+..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus       340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence            9888778888899999999999887542 233333222  3589999999999988888888889999999999999876


Q ss_pred             cCC-ccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCc--CCCCcccCCCCCCcEEEcccCcCCCCCCCC
Q 007762          362 EIP-QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSC  438 (590)
Q Consensus       362 ~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  438 (590)
                      .++ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..|..+++|++|++++|.+++..+..
T Consensus       420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~  499 (680)
T 1ziw_A          420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM  499 (680)
T ss_dssp             ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence            555 67888999999999999988888888889999999999999876  456788899999999999999998777765


Q ss_pred             CC-CCcccEEECcCccCCCCC-------CccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc
Q 007762          439 FH-PLSIEHVHLSKNMLHGQL-------KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ  510 (590)
Q Consensus       439 ~~-~~~L~~L~l~~n~~~~~~-------~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  510 (590)
                      +. +++|++|++++|.+++..       +...+.++++|+.|++++|.++...+..|.++++|++|++++|++++..+..
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  579 (680)
T 1ziw_A          500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV  579 (680)
T ss_dssp             TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence            54 788999999999885321       1223678899999999999998655567889999999999999999666667


Q ss_pred             ccCCCCCCEEECcCCccCCCCccccc-cCCccccccCCCCCCCccceeccccCCCCCCCCCcccc
Q 007762          511 LCKLNQLQLLDLSNNNLHGPIPPCFD-NTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVM  574 (590)
Q Consensus       511 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~  574 (590)
                      |..+++|+.|++++|++++..|..+. .++...                 ...+.|||+.|++.+
T Consensus       580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-----------------~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT-----------------ELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS-----------------EEECTTCCCCBCCCC
T ss_pred             hCCCCCCCEEECCCCcCCccChhHhcccccccC-----------------EEEccCCCcccCCcc
Confidence            78899999999999999987776554 322222                 234457777777763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-51  Score=443.20  Aligned_cols=495  Identities=23%  Similarity=0.199  Sum_probs=318.1

Q ss_pred             CCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCC
Q 007762           20 SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTS   99 (590)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   99 (590)
                      .+++|++++|  .+.+..+..+. .+++|++|++++|.+..    +.+.+|.++++|++|++++|.+.+..|.+|.++++
T Consensus        34 ~l~~L~Ls~n--~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  106 (606)
T 3t6q_A           34 STECLEFSFN--VLPTIQNTTFS-RLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA  106 (606)
T ss_dssp             TCCEEECTTC--CCSEECTTTST-TCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred             cCcEEEccCC--ccCcCChhHhc-cCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence            5677777777  44444455555 67777777777776654    44466777777777777777776666667777777


Q ss_pred             CcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccc-
Q 007762          100 LRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLS-  178 (590)
Q Consensus       100 L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~-  178 (590)
                      |++|++++|.++ .++...+.++++|++|++++|.+.+ ++...+..+++|+.|++++|.+........   ....+++ 
T Consensus       107 L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~  181 (606)
T 3t6q_A          107 LKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDM---SSLQQATN  181 (606)
T ss_dssp             CCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHH---HTTTTCCS
T ss_pred             ccEeeccccCcc-cCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhh---hhhcccce
Confidence            777777777766 4433356677777777777776652 222334446777777777776654322110   0112444 


Q ss_pred             -eEeccCCCCCCCcCChhccCCCcccEEEcCCCcCcc-------------------------ccchHHhhcCC--CCcEE
Q 007762          179 -RLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNG-------------------------EFPTWLLENNT--NLESL  230 (590)
Q Consensus       179 -~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-------------------------~~~~~~~~~l~--~L~~L  230 (590)
                       .|++ ..+.+.+..+..+.. .+|+.|+++++....                         .++...+..+.  +|+.|
T Consensus       182 l~L~l-~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L  259 (606)
T 3t6q_A          182 LSLNL-NGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI  259 (606)
T ss_dssp             EEEEC-TTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred             eEEec-CCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence             5666 555555555544433 466777776654110                         11111222222  56777


Q ss_pred             EccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCccc
Q 007762          231 FLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL  310 (590)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  310 (590)
                      ++++|.+.+..+..+..+++|+.|++++|.++ .+|..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            77777777666666777777777777777776 66665544 66777777777777766666677777777777777776


Q ss_pred             ccccchhhhcCCCCCcEEEccCCcCCCcc--CccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCc
Q 007762          311 TGEIPEHLAVGCVNLEYLALSNNSLEGHM--FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIP  388 (590)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  388 (590)
                      .+.++...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            66666655556777777777777776544  5566677777777777777766666667777777777777777765544


Q ss_pred             c-ccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCC-C--C-CCCCCcccEEECcCccCCCCCCcccc
Q 007762          389 R-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL-P--S-CFHPLSIEHVHLSKNMLHGQLKRGTF  463 (590)
Q Consensus       389 ~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~--~-~~~~~~L~~L~l~~n~~~~~~~~~~~  463 (590)
                      . .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.. +  . ...+++|+.|++++|.+++..+. .+
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~  496 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AF  496 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TT
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hh
Confidence            3 3667777777777777777666667777777777777777765421 1  1 22356777777777777533333 36


Q ss_pred             ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      ..+++|+.|++++|.+++..|..+..+++| +|++++|++++..|..+..+++|+.|++++|++....+
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            777777777777777777777777777777 77777777776666667777777777777777765443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.6e-51  Score=439.53  Aligned_cols=500  Identities=17%  Similarity=0.184  Sum_probs=411.8

Q ss_pred             CCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCC
Q 007762           21 LELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSL  100 (590)
Q Consensus        21 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  100 (590)
                      -+.++.++..+   ..+|..+.   +++++|++++|.++.    +++.+|.++++|++|++++|.+.+..|.+|.++++|
T Consensus        14 ~~~~~c~~~~l---~~iP~~l~---~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   83 (606)
T 3t6q_A           14 NKTYNCENLGL---NEIPGTLP---NSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL   83 (606)
T ss_dssp             TTEEECTTSCC---SSCCTTSC---TTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CceEECCCCCc---ccCcCCCC---CcCcEEEccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCcccc
Confidence            34677777744   57777665   479999999999976    767899999999999999999998889999999999


Q ss_pred             cEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceE
Q 007762          101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRL  180 (590)
Q Consensus       101 ~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L  180 (590)
                      ++|++++|.+++..+. .+.++++|++|++++|.+.+ ++...+.++++|++|++++|.+.......   .....+|+.|
T Consensus        84 ~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L  158 (606)
T 3t6q_A           84 DTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK---GFPTEKLKVL  158 (606)
T ss_dssp             CEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCCCTTCCEE
T ss_pred             CeeeCCCCcccccChh-hhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCccc---ccCCcccCEE
Confidence            9999999999844444 89999999999999999874 33456889999999999999987643222   1224589999


Q ss_pred             eccCCCCCCCcCChhccCCCccc--EEEcCCCcCccccchHHhhcCCCCcEEEccCCCCC--------------------
Q 007762          181 SLSSGYGDGVIFPKFLYHQHDLE--YVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA--------------------  238 (590)
Q Consensus       181 ~l~~~~~~~~~~~~~l~~~~~L~--~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------------------  238 (590)
                      ++ ..+.+.+..+..+..+++|+  .|++++|.+.+..+..+  ...+|+.|++++|...                    
T Consensus       159 ~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~  235 (606)
T 3t6q_A          159 DF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF  235 (606)
T ss_dssp             EC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCC
T ss_pred             Ec-ccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhh
Confidence            99 78888888888899999999  89999999986555543  4568888888876410                    


Q ss_pred             ------CCCcCCCCCCC--cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCccc
Q 007762          239 ------GPFRLPIHSHK--RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL  310 (590)
Q Consensus       239 ------~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  310 (590)
                            ......+..+.  +|+.|++++|.+++ ++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l  313 (606)
T 3t6q_A          236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF  313 (606)
T ss_dssp             TTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCC
T ss_pred             ccccccccChhHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCc
Confidence                  01111122222  78999999999984 45444444899999999999998 7888899999999999999999


Q ss_pred             ccccchhhhcCCCCCcEEEccCCcCCCccC-ccccCccccCceeccCccccccC--CccccCCCCCCEEEccCCcccccC
Q 007762          311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMF-SRNFNLTNLKWLQLEGNHFVGEI--PQSLSKCFVLEGLFLNNNSLSGMI  387 (590)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~  387 (590)
                      . .++...+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..
T Consensus       314 ~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  392 (606)
T 3t6q_A          314 E-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK  392 (606)
T ss_dssp             S-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred             C-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence            8 4443444569999999999999885554 45888999999999999988665  677899999999999999999888


Q ss_pred             ccccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCC-C-Ccccc
Q 007762          388 PRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQ-L-KRGTF  463 (590)
Q Consensus       388 ~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~-~-~~~~~  463 (590)
                      +..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+. +++|++|++++|.+.+. + ....+
T Consensus       393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence            88999999999999999999876654 488999999999999999887777654 78999999999998652 2 22348


Q ss_pred             ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccc
Q 007762          464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (590)
Q Consensus       464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~  542 (590)
                      ..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++| .|++++|++++.+|..+..++.+.
T Consensus       473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence            889999999999999998888999999999999999999999999999999999 999999999988888877655444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-49  Score=434.64  Aligned_cols=550  Identities=22%  Similarity=0.193  Sum_probs=368.9

Q ss_pred             cccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762            8 GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR   87 (590)
Q Consensus         8 ~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~   87 (590)
                      .+||. .+.  +++++|++++|  .+.+..+..+. .+++|++|++++|.+++    +.+.+|.++++|++|++++|.++
T Consensus        17 ~~ip~-~~~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A           17 TQVPD-DLP--TNITVLNLTHN--QLRRLPAANFT-RYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             SSCCS-CSC--TTCSEEECCSS--CCCCCCGGGGG-GGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCC
T ss_pred             ccccc-ccC--CCCcEEECCCC--CCCCcCHHHHh-CCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccC
Confidence            45884 344  79999999999  55655555666 99999999999999976    66688999999999999999999


Q ss_pred             ccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762           88 GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS  167 (590)
Q Consensus        88 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~  167 (590)
                      ...+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+.+ .+...+.++++|+.|++++|.+.......
T Consensus        87 ~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           87 QLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             ccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHH
Confidence            655568999999999999999998 6665589999999999999999874 34466789999999999999876543321


Q ss_pred             CCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcC---------------------------CCcCccccchHH
Q 007762          168 PSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLS---------------------------HMKMNGEFPTWL  220 (590)
Q Consensus       168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls---------------------------~~~~~~~~~~~~  220 (590)
                      .. .....+|+.|++ ..+.+.+..+..+..+.+|+.++++                           +|.+.+..+.++
T Consensus       165 ~~-~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  242 (680)
T 1ziw_A          165 LD-IFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF  242 (680)
T ss_dssp             HG-GGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred             hh-ccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence            10 112248999999 7778888777777766555555554                           444443333332


Q ss_pred             hhcCC--CCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecc-----cCCc-
Q 007762          221 LENNT--NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDG-----SIPS-  292 (590)
Q Consensus       221 ~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-----~~~~-  292 (590)
                       ..++  +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|...+     .+|. 
T Consensus       243 -~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          243 -LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             -GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC------CCEE
T ss_pred             -hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhccccccccccc
Confidence             3332  2555555555555544445555555555555555555433333332 5555555555443221     1121 


Q ss_pred             ---ccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCc--cCccccC--ccccCceeccCccccccCCc
Q 007762          293 ---SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGH--MFSRNFN--LTNLKWLQLEGNHFVGEIPQ  365 (590)
Q Consensus       293 ---~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~--l~~L~~L~l~~~~~~~~~~~  365 (590)
                         .+..+++|++|++++|.+. .++...+..+++|++|++++|.+...  ....+..  .++|+.|++++|.+.+..+.
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~  399 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD  399 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred             ChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence               4455556666666666655 33333334456666666666543211  1112221  24566666666777666667


Q ss_pred             cccCCCCCCEEEccCCcccccCc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC--CCCCCCC-CC
Q 007762          366 SLSKCFVLEGLFLNNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS--GSLPSCF-HP  441 (590)
Q Consensus       366 ~l~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~-~~  441 (590)
                      .+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.  +..|..+ .+
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            77777788888888887765544 56777788888888888777666777777888888888887765  3344433 36


Q ss_pred             CcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc--------ccccccCCCCEEECcCCcccCCCcccccC
Q 007762          442 LSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS--------DWVDGLSQLSHLILGHNNLEGEVPVQLCK  513 (590)
Q Consensus       442 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  513 (590)
                      ++|+.|++++|.++ .++...+.++++|+.|++++|.+++..+        ..+.++++|++|++++|+++...+..|..
T Consensus       480 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          480 RNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            78888888888885 5555557888888888888888875322        23677888888888888888444456888


Q ss_pred             CCCCCEEECcCCccCCCCccccccCCccccccCCCCCCCccceeccccCCCCCCCCCcccccCCC
Q 007762          514 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQHS  578 (590)
Q Consensus       514 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~~~~~  578 (590)
                      +++|+.|++++|++++..|..|.+++.++..+...+.+..+....+..   ..|.+....+...+
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP---AFRNLTELDMRFNP  620 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH---HHTTCSEEECTTCC
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc---cccccCEEEccCCC
Confidence            888888888888888766666777776666666666554443321110   12445555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-49  Score=426.91  Aligned_cols=519  Identities=20%  Similarity=0.172  Sum_probs=316.9

Q ss_pred             cccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762            8 GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR   87 (590)
Q Consensus         8 ~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~   87 (590)
                      ..||.+ +.  ++|++|++++|  .+.+..+..+. .+++|++|++++|.++.    +++.+|.++++|++|++++|.+.
T Consensus        24 ~~ip~~-~~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           24 SKVPDD-IP--SSTKNIDLSFN--PLKILKSYSFS-NFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             SSCCTT-SC--TTCCEEECTTS--CCCEECTTTTT-TCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCC
T ss_pred             ccCCCC-CC--CCcCEEECCCC--CcCEeChhhcc-CCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCccc
Confidence            367743 33  78999999999  55655565666 89999999999999875    66678999999999999999999


Q ss_pred             ccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762           88 GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS  167 (590)
Q Consensus        88 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~  167 (590)
                      +..|.+|+++++|++|++++|.++ .++...+.++++|++|++++|.+.+......+.++++|+.|++++|.+.......
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~  172 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND  172 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence            777999999999999999999998 6664479999999999999999874222357889999999999999887654332


Q ss_pred             CCCCCC-CcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCC-----
Q 007762          168 PSLTAP-NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF-----  241 (590)
Q Consensus       168 ~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----  241 (590)
                      ...... ...+..+++ ..+.+....+..+... +|+.|++++|.+.+......+.+++.++.+.+....+....     
T Consensus       173 ~~~l~~L~~~l~~L~l-~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~  250 (606)
T 3vq2_A          173 LQFLRENPQVNLSLDM-SLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF  250 (606)
T ss_dssp             THHHHHCTTCCCEEEC-TTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             hhhhhccccccceeec-cCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence            110000 001447888 6777766555555544 89999999998865444444588888888777443322210     


Q ss_pred             -cCCCCCCC--cccEEEc-cCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchh
Q 007762          242 -RLPIHSHK--RLRLLDI-SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH  317 (590)
Q Consensus       242 -~~~~~~~~--~L~~L~l-~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  317 (590)
                       ...+..+.  .++.+++ ..+.+.+..|. + ..+++|+.|+++++.+. .+| .+..+++|++|++++|.+. .+|. 
T Consensus       251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~-~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-  324 (606)
T 3vq2_A          251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F-HCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-  324 (606)
T ss_dssp             CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C-GGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-
T ss_pred             ChHHhhhhhhccHhheeccccccccccccc-c-ccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-
Confidence             00111111  2444444 33444444443 2 22555666666655554 333 4555555666666666552 5552 


Q ss_pred             hhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccccc--CCccccCCCCCCEEEccCCcccccCccccCCCC
Q 007762          318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE--IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT  395 (590)
Q Consensus       318 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~  395 (590)
                      +  .+++|++|++++|...+..  .+..+++|++|++++|.+.+.  .+..+..+++|+.|++++|.+.+ ++..+..++
T Consensus       325 ~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~  399 (606)
T 3vq2_A          325 L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE  399 (606)
T ss_dssp             C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCT
T ss_pred             C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCC
Confidence            2  3555666666555333221  344555566666665555433  24445555556666666555553 334555555


Q ss_pred             CccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEE
Q 007762          396 RLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD  473 (590)
Q Consensus       396 ~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  473 (590)
                      +|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. +++|++|++++|.+.+.+.+..+..+++|+.|+
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  479 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD  479 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence            66666666655554444 3455555666666666655554444332 455666666666554432222255555666666


Q ss_pred             cCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC-ccccccCCCCCC
Q 007762          474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT-LHESYSNSSSPN  551 (590)
Q Consensus       474 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~~~~~~~~~~~~  551 (590)
                      +++|.+++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..+. .+...+...+|.
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence            6666555555555555566666666666655555555555566666666666555 4454454443 233444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-48  Score=434.59  Aligned_cols=506  Identities=21%  Similarity=0.162  Sum_probs=404.4

Q ss_pred             ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc
Q 007762            9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG   88 (590)
Q Consensus         9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~   88 (590)
                      .||.    -.++|++|++++|  .+.+..+..+. .+++|++|+|++|....   .+++.+|.++++|++|+|++|.+.+
T Consensus        18 ~vP~----lp~~l~~LdLs~N--~i~~i~~~~~~-~l~~L~~LdLs~n~~~~---~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           18 QVPQ----VLNTTERLLLSFN--YIRTVTASSFP-FLEQLQLLELGSQYTPL---TIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CCCS----SCTTCCEEEEESC--CCCEECSSSCS-SCCSCSEEEECTTCCCC---EECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCC----CCCCcCEEECCCC--cCCccChhHCc-ccccCeEEeCCCCCCcc---ccCHHHhcCCCCCCEEECCCCcCcc
Confidence            5773    4579999999999  66666777777 99999999999996655   6767899999999999999999998


Q ss_pred             cCCccccCCCCCcEEEccccccccccCC-CCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762           89 SLPWCMANMTSLRILYVSSNQLTGSISS-SPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS  167 (590)
Q Consensus        89 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~  167 (590)
                      ..|.+|.++++|++|++++|.+++.++. ..+.++++|++|++++|.+.+..+...+.++++|+.|++++|.+.......
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence            8899999999999999999999865554 248999999999999999986555567899999999999999886554332


Q ss_pred             CCCCCCCcccceEeccCCCCCCCcCChhccCCCc------ccEEEcCCCcCccccchHHhhcC--CCCcEEEccCCC---
Q 007762          168 PSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHD------LEYVDLSHMKMNGEFPTWLLENN--TNLESLFLVNDS---  236 (590)
Q Consensus       168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~------L~~L~ls~~~~~~~~~~~~~~~l--~~L~~L~l~~~~---  236 (590)
                      ... ....+|+.|++ ..+.+.+..+..+..+.+      |+.|++++|.+.+..+..+....  .+++.+.+..+.   
T Consensus       168 l~~-l~~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~  245 (844)
T 3j0a_A          168 LEP-LQGKTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA  245 (844)
T ss_dssp             GHH-HHHCSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred             ccc-ccCCccceEEC-CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence            111 01147889999 677777777766665554      99999999988877776654333  578888876432   


Q ss_pred             ------CCCCCcCCCCCC--CcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCc
Q 007762          237 ------LAGPFRLPIHSH--KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN  308 (590)
Q Consensus       237 ------~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  308 (590)
                            +.+.....+..+  ++|+.|++++|.+.+..+..+. .+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus       246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN  324 (844)
T ss_dssp             SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred             cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence                  222223334333  6899999999998855454444 4889999999999999888888999999999999999


Q ss_pred             ccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCc
Q 007762          309 QLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIP  388 (590)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  388 (590)
                      .+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.     ..+++|+.+++++|+++ .++
T Consensus       325 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~  397 (844)
T 3j0a_A          325 LLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP  397 (844)
T ss_dssp             CCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred             CCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence            998 55444455789999999999999887788888999999999999988732     33788999999999988 334


Q ss_pred             cccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCC--CCCCCcccEEECcCccCCCC----CCcc
Q 007762          389 RWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPS--CFHPLSIEHVHLSKNMLHGQ----LKRG  461 (590)
Q Consensus       389 ~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~~~~~----~~~~  461 (590)
                      ..   ..+++.|++++|.+.+... ..+..+++|+.|++++|.+++..+.  ...+++|+.|++++|.+...    ....
T Consensus       398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~  474 (844)
T 3j0a_A          398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD  474 (844)
T ss_dssp             CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred             cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence            32   5678999999999886432 3456899999999999999865543  23368999999999998532    2234


Q ss_pred             ccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762          462 TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                      .|.++++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+.  ++|+.|++++|++++.+|..|..+.
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~  550 (844)
T 3j0a_A          475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS  550 (844)
T ss_dssp             CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred             hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence            478899999999999999998889999999999999999999976666555  8999999999999999998887554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.3e-49  Score=421.57  Aligned_cols=503  Identities=18%  Similarity=0.103  Sum_probs=395.4

Q ss_pred             CCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCC
Q 007762           21 LELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSL  100 (590)
Q Consensus        21 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  100 (590)
                      -++++.++..+   ..+|..+.   +++++|++++|.+++    +++.+|.++++|++|++++|.+++..|.+|.++++|
T Consensus        13 ~~~~~c~~~~l---~~ip~~~~---~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L   82 (606)
T 3vq2_A           13 NITYQCMDQKL---SKVPDDIP---SSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL   82 (606)
T ss_dssp             TTEEECTTSCC---SSCCTTSC---TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCceEccCCCc---ccCCCCCC---CCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence            46788888855   56776654   789999999999976    776789999999999999999998888899999999


Q ss_pred             cEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceE
Q 007762          101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRL  180 (590)
Q Consensus       101 ~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L  180 (590)
                      ++|++++|.++ .++...+.++++|++|++++|.+.+ .+...+.++++|++|++++|.+...                 
T Consensus        83 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-----------------  143 (606)
T 3vq2_A           83 SNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSC-----------------  143 (606)
T ss_dssp             CEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCC-----------------
T ss_pred             CEeECCCCccc-ccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccce-----------------
Confidence            99999999998 5533489999999999999999873 4445688999999999988875421                 


Q ss_pred             eccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCC----CcEEEccCCCCCCCCcCCCCCCCcccEEEc
Q 007762          181 SLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTN----LESLFLVNDSLAGPFRLPIHSHKRLRLLDI  256 (590)
Q Consensus       181 ~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  256 (590)
                                .+|..+.++++|++|++++|.+.+..+..+ ..+++    +..|++++|.+.+..+..+... +|+.|++
T Consensus       144 ----------~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L  211 (606)
T 3vq2_A          144 ----------KLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTL  211 (606)
T ss_dssp             ----------CCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEE
T ss_pred             ----------echHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeec
Confidence                      245566677777777777777664433332 33333    3367777777665544444333 6777777


Q ss_pred             cCCcCCCCCchhhhhcCCCCcEEEc---------------------------------cCceecccCCcccCCCCCCcEE
Q 007762          257 SNNNFRGHIPVEIGDVLPGLFSLNI---------------------------------SMNALDGSIPSSFGNMKFLQLL  303 (590)
Q Consensus       257 ~~n~l~~~~~~~~~~~~~~L~~L~L---------------------------------~~n~~~~~~~~~l~~l~~L~~L  303 (590)
                      ++|.+.+.........+++++.+++                                 ..+.+.+..|. +..+++|+.|
T Consensus       212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L  290 (606)
T 3vq2_A          212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAM  290 (606)
T ss_dssp             ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEE
T ss_pred             cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEE
Confidence            7776643222222222455554444                                 44556656665 8889999999


Q ss_pred             EccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcc
Q 007762          304 DVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL  383 (590)
Q Consensus       304 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  383 (590)
                      +++++.+. .++  .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+
T Consensus       291 ~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  362 (606)
T 3vq2_A          291 SLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL  362 (606)
T ss_dssp             EEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred             EecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence            99999997 777  344688999999999999 4566 45 8999999999999655443  567899999999999999


Q ss_pred             ccc--CccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCC-CC-CCCCcccEEECcCccCCCCCC
Q 007762          384 SGM--IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP-SC-FHPLSIEHVHLSKNMLHGQLK  459 (590)
Q Consensus       384 ~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~~~~L~~L~l~~n~~~~~~~  459 (590)
                      ++.  .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ .. ..+++|++|++++|.+.+..+
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  441 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD  441 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence            866  37788999999999999999884 56889999999999999999988776 33 358899999999999976566


Q ss_pred             ccccccCCCCcEEEcCCCcCCC-CccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762          460 RGTFFNYHSLVTLDLSYNRLNG-SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT  538 (590)
Q Consensus       460 ~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  538 (590)
                      .. +..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+..+
T Consensus       442 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  520 (606)
T 3vq2_A          442 GI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL  520 (606)
T ss_dssp             TT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred             hh-hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence            55 8999999999999999997 478899999999999999999998889999999999999999999999889999988


Q ss_pred             CccccccCCCCCCCcccee-------ccccCCCCCCCCCccccc
Q 007762          539 TLHESYSNSSSPNKQFEIF-------FFIQGPQGHPRLATLVMN  575 (590)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~np~~~~~~~~  575 (590)
                      +.+...+...+.+..++..       .....+.|||..|++.+.
T Consensus       521 ~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            8777666666655443321       233467899999988754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.3e-46  Score=397.44  Aligned_cols=474  Identities=23%  Similarity=0.207  Sum_probs=371.7

Q ss_pred             ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc
Q 007762            9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG   88 (590)
Q Consensus         9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~   88 (590)
                      +||. .+.  +++++|++++|  .+.+..+..+. .+++|++|++++|.++.    +++.+|.++++|++|++++|.+++
T Consensus        21 ~ip~-~l~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~   90 (570)
T 2z63_A           21 KIPD-NLP--FSTKNLDLSFN--PLRHLGSYSFF-SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQS   90 (570)
T ss_dssp             SCCS-SSC--SSCCEEECCSC--CCCEECTTTTT-TCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ccCC-Ccc--ccccEEEccCC--ccCccChhHhh-CCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCCc
Confidence            4663 232  47888888888  55555555666 88888888888888765    666778888888888888888887


Q ss_pred             cCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCC
Q 007762           89 SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSP  168 (590)
Q Consensus        89 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~  168 (590)
                      ..+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+.+......+.++++|+.|++++|.+...     
T Consensus        91 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-----  164 (570)
T 2z63_A           91 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----  164 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-----
T ss_pred             cCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-----
Confidence            77788888888888888888887 566556888888888888888876422235677788888888877765332     


Q ss_pred             CCCCCCcccceEeccCCCCCCCcCChhccCCCcc----cEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC-----
Q 007762          169 SLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDL----EYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG-----  239 (590)
Q Consensus       169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L----~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----  239 (590)
                                             .+..+..+++|    +.+++++|.+.+..+.. +... +|+.|++++|....     
T Consensus       165 -----------------------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~  219 (570)
T 2z63_A          165 -----------------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKT  219 (570)
T ss_dssp             -----------------------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHH
T ss_pred             -----------------------cHHHccchhccchhhhhcccCCCCceecCHHH-hccC-cceeEecccccccccchhh
Confidence                                   33445555556    78999999887554443 3443 78999888773221     


Q ss_pred             --------------------------CCcCCCCCCC--cccEEEccCC-cCCCCCchhhhhcCCCCcEEEccCceecccC
Q 007762          240 --------------------------PFRLPIHSHK--RLRLLDISNN-NFRGHIPVEIGDVLPGLFSLNISMNALDGSI  290 (590)
Q Consensus       240 --------------------------~~~~~~~~~~--~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~  290 (590)
                                                .....+..++  .++.++++++ .+.+..+..+.. +++|++|++++|.++ .+
T Consensus       220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l  297 (570)
T 2z63_A          220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RV  297 (570)
T ss_dssp             HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SC
T ss_pred             hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hh
Confidence                                      0111122222  3456666666 555566666654 789999999999998 68


Q ss_pred             CcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccC--Ccccc
Q 007762          291 PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI--PQSLS  368 (590)
Q Consensus       291 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~  368 (590)
                      |..+..+ +|++|++++|.+. .+|..   .+++|+.|++++|.+.+..+.  ..+++|++|++++|.+.+..  +..+.
T Consensus       298 ~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~  370 (570)
T 2z63_A          298 KDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF  370 (570)
T ss_dssp             CBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred             hhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence            8888888 9999999999998 77763   488999999999988765544  67899999999999987543  56788


Q ss_pred             CCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccE
Q 007762          369 KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEH  446 (590)
Q Consensus       369 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~  446 (590)
                      .+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. +++|++
T Consensus       371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            899999999999999865554 8899999999999999987665 5688999999999999999887777664 789999


Q ss_pred             EECcCccCC-CCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762          447 VHLSKNMLH-GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  525 (590)
Q Consensus       447 L~l~~n~~~-~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (590)
                      |++++|.+. +.+|.. +..+++|+.|++++|.+++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|
T Consensus       450 L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          450 LKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             EECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECcCCcCccccchhh-hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            999999986 356655 899999999999999999888999999999999999999999888888999999999999999


Q ss_pred             ccCCCCccc
Q 007762          526 NLHGPIPPC  534 (590)
Q Consensus       526 ~l~~~~p~~  534 (590)
                      ++++..|..
T Consensus       529 ~~~~~~~~~  537 (570)
T 2z63_A          529 PWDCSCPRI  537 (570)
T ss_dssp             CBCCCTTTT
T ss_pred             cccCCCcch
Confidence            999887743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-45  Score=391.86  Aligned_cols=473  Identities=17%  Similarity=0.170  Sum_probs=374.7

Q ss_pred             cccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762            8 GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR   87 (590)
Q Consensus         8 ~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~   87 (590)
                      .+||+..+   ++|++|++++|  .+.+..+..+. .+++|++|++++|.+++    +++.+|..+++|++|++++|.+.
T Consensus        18 ~~ip~~~~---~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           18 TSIPSGLT---AAMKSLDLSFN--KITYIGHGDLR-ACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             SSCCSCCC---TTCCEEECCSS--CCCEECSSTTS-SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccCC---CCccEEECcCC--ccCccChhhhh-cCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccC
Confidence            36775332   68888888888  55666666666 88888888888888875    66577888888888888888888


Q ss_pred             ccCCccccCCCCCcEEEcccccccc-ccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccC
Q 007762           88 GSLPWCMANMTSLRILYVSSNQLTG-SISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQ  166 (590)
Q Consensus        88 ~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~  166 (590)
                      +..+.+|+++++|++|++++|.+++ .++. .+.++++|++|++++|.+.+.++...+.++++|+.|++++|.+.     
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----  161 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-----  161 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence            6666668888888888888888873 2333 67888888888888887555666667777888888877776543     


Q ss_pred             CCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCC--c-C
Q 007762          167 SPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF--R-L  243 (590)
Q Consensus       167 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~  243 (590)
                                             +..|..+..+++|++|+++++.+. .++..++..+++|+.|++++|.+.+..  + .
T Consensus       162 -----------------------~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  217 (549)
T 2z81_A          162 -----------------------NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP  217 (549)
T ss_dssp             -----------------------EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred             -----------------------ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc
Confidence                                   335667788899999999999876 677777788999999999999988742  1 2


Q ss_pred             CCCCCCcccEEEccCCcCCCCCchhhh---hcCCCCcEEEccCceeccc------CCcccCCCCCCcEEEccCcccccc-
Q 007762          244 PIHSHKRLRLLDISNNNFRGHIPVEIG---DVLPGLFSLNISMNALDGS------IPSSFGNMKFLQLLDVTNNQLTGE-  313 (590)
Q Consensus       244 ~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~~~~~------~~~~l~~l~~L~~L~l~~n~~~~~-  313 (590)
                      ....+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+.      ....+..+++++.+++.++.+... 
T Consensus       218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~  297 (549)
T 2z81_A          218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY  297 (549)
T ss_dssp             SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred             hhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence            234578999999999988765554442   3367999999999988742      123456788999999998876521 


Q ss_pred             ----cchhhhcCCCCCcEEEccCCcCCCccCccc-cCccccCceeccCccccccCC---ccccCCCCCCEEEccCCcccc
Q 007762          314 ----IPEHLAVGCVNLEYLALSNNSLEGHMFSRN-FNLTNLKWLQLEGNHFVGEIP---QSLSKCFVLEGLFLNNNSLSG  385 (590)
Q Consensus       314 ----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~  385 (590)
                          ++. .+...++|+.|++++|.+.. +|..+ ..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+++
T Consensus       298 ~~~~l~~-~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  375 (549)
T 2z81_A          298 LFYDLST-VYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS  375 (549)
T ss_dssp             GSCCCCH-HHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred             hcccchh-hhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence                111 12236789999999999875 45444 579999999999999987653   347789999999999999986


Q ss_pred             cCc--cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcccc
Q 007762          386 MIP--RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF  463 (590)
Q Consensus       386 ~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  463 (590)
                      ..+  ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++. +..+ +++|++|++++|.+++.     .
T Consensus       376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~-~~~L~~L~Ls~N~l~~~-----~  447 (549)
T 2z81_A          376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI-PQTLEVLDVSNNNLDSF-----S  447 (549)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS-CTTCSEEECCSSCCSCC-----C
T ss_pred             cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh-cCCceEEECCCCChhhh-----c
Confidence            532  45888999999999999998 6788889999999999999999844 3332 46899999999999653     2


Q ss_pred             ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      ..+++|+.|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            46789999999999999 5665 4678999999999999998888889999999999999999998777

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-45  Score=409.18  Aligned_cols=503  Identities=20%  Similarity=0.230  Sum_probs=404.1

Q ss_pred             CCCCccccccCCCCCCCCCCCCeEeCcCCcCcccccc-chHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEE
Q 007762            1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSF-LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQEL   79 (590)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L   79 (590)
                      +|+|.+.+..| .+|+++++|++|++++|  ...+.+ |..+. .+++|++|+|++|.+..    +.+..|.++++|++|
T Consensus        31 Ls~N~i~~i~~-~~~~~l~~L~~LdLs~n--~~~~~i~~~~f~-~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           31 LSFNYIRTVTA-SSFPFLEQLQLLELGSQ--YTPLTIDKEAFR-NLPNLRILDLGSSKIYF----LHPDAFQGLFHLFEL  102 (844)
T ss_dssp             EESCCCCEECS-SSCSSCCSCSEEEECTT--CCCCEECTTTTS-SCTTCCEEECTTCCCCE----ECTTSSCSCSSCCCE
T ss_pred             CCCCcCCccCh-hHCcccccCeEEeCCCC--CCccccCHHHhc-CCCCCCEEECCCCcCcc----cCHhHccCCcccCEe
Confidence            35777777666 78999999999999999  555666 55565 99999999999999976    656899999999999


Q ss_pred             EeecccccccCCcc--ccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccC--CCccEEEc
Q 007762           80 YIYNNDLRGSLPWC--MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNH--SRLKVFWA  155 (590)
Q Consensus        80 ~L~~n~i~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l--~~L~~l~l  155 (590)
                      +|++|.+.+..+..  +.++++|++|++++|.+++..+...+.++++|++|++++|.+.+. ....+..+  ++|+.+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCEE
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEEC
Confidence            99999999766654  899999999999999998544444689999999999999998743 33556665  89999999


Q ss_pred             cCCcccccccCCCCC---CCCCcccceEeccCCCCCCCcCChhccC---CCcccEEEcCCCc---------CccccchHH
Q 007762          156 KNNEINAEITQSPSL---TAPNFQLSRLSLSSGYGDGVIFPKFLYH---QHDLEYVDLSHMK---------MNGEFPTWL  220 (590)
Q Consensus       156 ~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~ls~~~---------~~~~~~~~~  220 (590)
                      ++|.+..........   ......|+.|++ ..+.+.+..+..+..   ..+++.+.++.+.         +.+.... .
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L-s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~  259 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDV-SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN-T  259 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBC-SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT-T
T ss_pred             CCCccccccccchhhcCCccccCceeEEec-CCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh-h
Confidence            999987654433211   122336999999 777777776666543   3578888887332         2211111 1


Q ss_pred             hhc--CCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCC
Q 007762          221 LEN--NTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMK  298 (590)
Q Consensus       221 ~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~  298 (590)
                      +..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.+++..+..+..++
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCC
Confidence            233  378999999999999888888999999999999999998655555544 89999999999999988889999999


Q ss_pred             CCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEc
Q 007762          299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL  378 (590)
Q Consensus       299 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  378 (590)
                      +|++|++++|.+. .++...+..+++|+.|++++|.+.+.     ..+++|+.|++++|.+. .+|..   ...++.+++
T Consensus       339 ~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l  408 (844)
T 3j0a_A          339 KVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL  408 (844)
T ss_dssp             TCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred             CCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence            9999999999997 66666666799999999999998753     23789999999999998 44443   568999999


Q ss_pred             cCCcccccCc-cccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCC-----CCCC-CCCcccEEECc
Q 007762          379 NNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSL-----PSCF-HPLSIEHVHLS  450 (590)
Q Consensus       379 ~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-----~~~~-~~~~L~~L~l~  450 (590)
                      ++|.+.+... ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+....     +..+ .+++|+.|+++
T Consensus       409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls  488 (844)
T 3j0a_A          409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN  488 (844)
T ss_dssp             CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred             ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence            9999986432 3456899999999999999865443 4667899999999999997433     2333 36899999999


Q ss_pred             CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCC
Q 007762          451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP  530 (590)
Q Consensus       451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (590)
                      +|.++ .+++..|.++++|+.|+|++|.+++..+..+.  ++|++|++++|++++..|..+   ++|+.|++++|++...
T Consensus       489 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          489 HNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE  562 (844)
T ss_dssp             HHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred             CCccc-ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence            99996 45555589999999999999999987777776  899999999999998888765   5899999999999864


Q ss_pred             C
Q 007762          531 I  531 (590)
Q Consensus       531 ~  531 (590)
                      -
T Consensus       563 c  563 (844)
T 3j0a_A          563 C  563 (844)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-45  Score=387.60  Aligned_cols=483  Identities=20%  Similarity=0.223  Sum_probs=386.6

Q ss_pred             CCCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEE
Q 007762            1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELY   80 (590)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~   80 (590)
                      +++|++.+..+ .+|+++++|++|++++|  .+.+..+..+. .+++|++|++++|.++.    +++..|..+++|++|+
T Consensus        35 Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~-~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           35 LSFNPLRHLGS-YSFFSFPELQVLDLSRC--EIQTIEDGAYQ-SLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CCSCCCCEECT-TTTTTCSSCCEEECTTC--CCCEECTTTTT-TCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEE
T ss_pred             ccCCccCccCh-hHhhCCCCceEEECCCC--cCCccCccccc-CchhCCEEeCcCCcCCc----cCHhhhcCcccccccc
Confidence            46777776555 78999999999999999  55555555566 99999999999999875    6768899999999999


Q ss_pred             eecccccccCCccccCCCCCcEEEcccccccc-ccCCCCccCCCCCcEEECcCCccccccCccccccCCCc----cEEEc
Q 007762           81 IYNNDLRGSLPWCMANMTSLRILYVSSNQLTG-SISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRL----KVFWA  155 (590)
Q Consensus        81 L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L----~~l~l  155 (590)
                      +++|.+++..+..++++++|++|++++|.+++ .+|. .+.++++|++|++++|.+. .++...+..+++|    +.+++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence            99999996555579999999999999999984 3555 7899999999999999987 3445667777777    89999


Q ss_pred             cCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCc-----cccchHHhhcCC--CCc
Q 007762          156 KNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMN-----GEFPTWLLENNT--NLE  228 (590)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~-----~~~~~~~~~~l~--~L~  228 (590)
                      ++|.+.......    ....+++.|++.........++..+..+.+++...+....+.     ..++...+..+.  .++
T Consensus       185 ~~n~l~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  260 (570)
T 2z63_A          185 SLNPMNFIQPGA----FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  260 (570)
T ss_dssp             TTCCCCEECTTT----TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred             CCCCceecCHHH----hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence            999887655433    233378899884443333445666777777776655432111     122332233443  356


Q ss_pred             EEEccCC-CCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccC
Q 007762          229 SLFLVND-SLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN  307 (590)
Q Consensus       229 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~  307 (590)
                      .+.+.++ .+.+..+..+..+++|+.|++++|.+. .+|..+.. + +|++|++++|.+. .+|.  ..+++|++|++++
T Consensus       261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~  334 (570)
T 2z63_A          261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTS  334 (570)
T ss_dssp             EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEES
T ss_pred             hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCcC
Confidence            6777766 566667777888999999999999987 67877765 5 9999999999988 5665  4788999999999


Q ss_pred             cccccccchhhhcCCCCCcEEEccCCcCCCcc--CccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762          308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM--FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG  385 (590)
Q Consensus       308 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  385 (590)
                      |.+.+..+.   ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+
T Consensus       335 n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~  410 (570)
T 2z63_A          335 NKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ  410 (570)
T ss_dssp             CBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred             Ccccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence            988755554   35899999999999987643  56677899999999999998855444 8899999999999999987


Q ss_pred             cCc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC-CCCCCCC-CCCcccEEECcCccCCCCCCccc
Q 007762          386 MIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS-GSLPSCF-HPLSIEHVHLSKNMLHGQLKRGT  462 (590)
Q Consensus       386 ~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~  462 (590)
                      ..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+ .+++|++|++++|.+++..+.. 
T Consensus       411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-  489 (570)
T 2z63_A          411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-  489 (570)
T ss_dssp             CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-
T ss_pred             ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh-
Confidence            665 56889999999999999999888889999999999999999987 4555544 4789999999999996554554 


Q ss_pred             cccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCc
Q 007762          463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP  508 (590)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  508 (590)
                      +..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus       490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            8899999999999999998888889999999999999999997665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=374.18  Aligned_cols=453  Identities=17%  Similarity=0.165  Sum_probs=280.0

Q ss_pred             CCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEe
Q 007762            2 SSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYI   81 (590)
Q Consensus         2 ~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L   81 (590)
                      ++|+++ +||.. +.  ++|++|++++|  .+.+..+..+. .+++|++|++++|.+++    +.+.+|..+++|++|++
T Consensus         8 s~n~l~-~ip~~-~~--~~L~~L~Ls~n--~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            8 SKNGLI-HVPKD-LS--QKTTILNISQN--YISELWTSDIL-SLSKLRILIISHNRIQY----LDISVFKFNQELEYLDL   76 (520)
T ss_dssp             TTSCCS-SCCCS-CC--TTCSEEECCSS--CCCCCCHHHHT-TCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEEC
T ss_pred             CCCCcc-ccccc-cc--ccccEEECCCC--cccccChhhcc-ccccccEEecCCCccCC----cChHHhhcccCCCEEec
Confidence            456665 46643 32  66777777777  44444445555 66777777777776654    44456667777777777


Q ss_pred             ecccccccCCccccCCCCCcEEEcccccccc-ccCCCCccCCCCCcEEECcCCccccccCccccccCCCc--cEEEccCC
Q 007762           82 YNNDLRGSLPWCMANMTSLRILYVSSNQLTG-SISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRL--KVFWAKNN  158 (590)
Q Consensus        82 ~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L--~~l~l~~~  158 (590)
                      ++|.++ .+|..  .+++|++|++++|.+++ .+|. .+.++++|++|++++|.+.+    ..+..+++|  +.+++++|
T Consensus        77 s~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           77 SHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEEC
T ss_pred             CCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecc
Confidence            777666 34444  56677777777776663 2333 56667777777777766653    234455555  66666665


Q ss_pred             cccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCC-cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCC-
Q 007762          159 EINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQH-DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDS-  236 (590)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  236 (590)
                      .+..                          .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|. 
T Consensus       149 ~l~~--------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          149 ETYG--------------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             TTTT--------------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred             cccc--------------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence            5411                          222333333333 233456677766666665555667777777777765 


Q ss_pred             ------CCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhh--cCCCCcEEEccCceecccCCccc-----CCCCCCcEE
Q 007762          237 ------LAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD--VLPGLFSLNISMNALDGSIPSSF-----GNMKFLQLL  303 (590)
Q Consensus       237 ------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L  303 (590)
                            +.+..+ .+..+++|+.|+++++.+.+..+..+..  ..++|++|++++|.+++.+|..+     ..++.|+.+
T Consensus       203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence                  333333 4566777888888777765433322211  14578888888888877777777     777778888


Q ss_pred             EccCcccccccch-hhhcC--CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccC
Q 007762          304 DVTNNQLTGEIPE-HLAVG--CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  380 (590)
Q Consensus       304 ~l~~n~~~~~~~~-~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  380 (590)
                      ++++|.+  .+|. .+...  ..+|+.|++++|.+....  .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred             cccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence            8877776  4552 22210  145777777777654322  113456666666666666555555555666666666666


Q ss_pred             Ccccc--cCccccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCC
Q 007762          381 NSLSG--MIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ  457 (590)
Q Consensus       381 n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  457 (590)
                      |.+++  .++..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.++                       +.
T Consensus       358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-----------------------~~  414 (520)
T 2z7x_B          358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-----------------------DT  414 (520)
T ss_dssp             SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-----------------------GG
T ss_pred             CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC-----------------------cc
Confidence            66554  2334455555555555555555543333 2444455555555555443                       44


Q ss_pred             CCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCCccCCCCc
Q 007762          458 LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       458 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      ++.. +.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       415 ~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          415 IFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            4333 21  68999999999998 67777778999999999999998 55654 8889999999999999987654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.4e-43  Score=371.11  Aligned_cols=483  Identities=20%  Similarity=0.189  Sum_probs=361.8

Q ss_pred             CCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCC
Q 007762           18 FKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM   97 (590)
Q Consensus        18 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l   97 (590)
                      |+...+.+.+++++   ..+|..++   ++|++|++++|.+++    +++.+|..+++|++|++++|.+++..|.+|..+
T Consensus         4 C~~~~~c~~~~~~l---~~ip~~~~---~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   73 (549)
T 2z81_A            4 CDASGVCDGRSRSF---TSIPSGLT---AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSL   73 (549)
T ss_dssp             ECTTSEEECTTSCC---SSCCSCCC---TTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCceEECCCCcc---ccccccCC---CCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence            44445567777744   46666543   678899999988865    555778888889999999988887777888888


Q ss_pred             CCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCccc
Q 007762           98 TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL  177 (590)
Q Consensus        98 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L  177 (590)
                      ++|++|++++|.++ .++...+.++++|++|++++|.+.+......+.++++|+.|++++|.+..               
T Consensus        74 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~---------------  137 (549)
T 2z81_A           74 GSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS---------------  137 (549)
T ss_dssp             TTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------
T ss_pred             ccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc---------------
Confidence            89999999988887 44443578888899999988887642223467778888888877765221               


Q ss_pred             ceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEcc
Q 007762          178 SRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDIS  257 (590)
Q Consensus       178 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  257 (590)
                                  ...+..+..+++|++|++++|.+.+..|..+ ..+++|+.|+++.|.+.......+..+++|+.|+++
T Consensus       138 ------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  204 (549)
T 2z81_A          138 ------------EIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR  204 (549)
T ss_dssp             ------------EECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred             ------------ccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence                        1123456778899999999999887777765 788899999998887765333333467889999999


Q ss_pred             CCcCCCCC--chhhhhcCCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCccccccc--c---hhhhcCCCCCc
Q 007762          258 NNNFRGHI--PVEIGDVLPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQLTGEI--P---EHLAVGCVNLE  326 (590)
Q Consensus       258 ~n~l~~~~--~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~--~---~~~~~~~~~L~  326 (590)
                      +|.+++..  +..+...+++|+.|++++|.+++.    ++..+..++.|+.+++++|.+.+..  +   ......+++++
T Consensus       205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~  284 (549)
T 2z81_A          205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE  284 (549)
T ss_dssp             SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred             CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence            99887431  223334467899999999888753    3334566788999999988876321  1   11123467889


Q ss_pred             EEEccCCcCCCcc-----CccccCccccCceeccCccccccCCccc-cCCCCCCEEEccCCcccccCc---cccCCCCCc
Q 007762          327 YLALSNNSLEGHM-----FSRNFNLTNLKWLQLEGNHFVGEIPQSL-SKCFVLEGLFLNNNSLSGMIP---RWLGNLTRL  397 (590)
Q Consensus       327 ~L~l~~n~i~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L  397 (590)
                      .+.+.++.+....     +..+...++|+.|++++|.+. .+|..+ .++++|++|++++|.+.+..+   ..+..+++|
T Consensus       285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L  363 (549)
T 2z81_A          285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL  363 (549)
T ss_dssp             EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred             cccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence            9998888765421     111233578999999999987 566554 679999999999999987653   347889999


Q ss_pred             cEEECCCCcCcCCCC--cccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcC
Q 007762          398 QHIMMPKNHLEGPIP--VEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS  475 (590)
Q Consensus       398 ~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls  475 (590)
                      +.|++++|.+.+..+  ..+..+++|++|++++|.++........+++|++|++++|.+. .++.. +  .++|+.|+++
T Consensus       364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~-~--~~~L~~L~Ls  439 (549)
T 2z81_A          364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC-I--PQTLEVLDVS  439 (549)
T ss_dssp             CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTT-S--CTTCSEEECC
T ss_pred             cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccch-h--cCCceEEECC
Confidence            999999999985432  4588999999999999999955544556789999999999984 55544 2  2689999999


Q ss_pred             CCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCC
Q 007762          476 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSP  550 (590)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~  550 (590)
                      +|++++.+    ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|..+..++.+...+...++
T Consensus       440 ~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          440 NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            99999643    57899999999999998 6776 5689999999999999999888888887665544444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-44  Score=388.04  Aligned_cols=359  Identities=17%  Similarity=0.183  Sum_probs=311.2

Q ss_pred             CCCCCCcCChhccCCCcccEEEcCCCcCccc-----------------cchHHhh--cCCCCcEEEccCCCCCCCCcCCC
Q 007762          185 GYGDGVIFPKFLYHQHDLEYVDLSHMKMNGE-----------------FPTWLLE--NNTNLESLFLVNDSLAGPFRLPI  245 (590)
Q Consensus       185 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~  245 (590)
                      .+.+++ +|..++++++|++|++++|.+.+.                 +|..+ .  ++++|+.|++++|.+.+.+|..+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHH
Confidence            445666 899999999999999999999875                 88775 5  89999999999999999999999


Q ss_pred             CCCCcccEEEccCCc-CCC-CCchhhhhc-----CCCCcEEEccCceecccCCc--ccCCCCCCcEEEccCcccccccch
Q 007762          246 HSHKRLRLLDISNNN-FRG-HIPVEIGDV-----LPGLFSLNISMNALDGSIPS--SFGNMKFLQLLDVTNNQLTGEIPE  316 (590)
Q Consensus       246 ~~~~~L~~L~l~~n~-l~~-~~~~~~~~~-----~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~  316 (590)
                      ..+++|+.|++++|. +++ .+|..+...     +++|++|++++|.++ .+|.  .++.+++|++|++++|.+.+.+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            999999999999998 887 788887652     389999999999999 8888  89999999999999999998999 


Q ss_pred             hhhcCCCCCcEEEccCCcCCCccCccccCccc-cCceeccCccccccCCccccCCC--CCCEEEccCCcccccCccccC-
Q 007762          317 HLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN-LKWLQLEGNHFVGEIPQSLSKCF--VLEGLFLNNNSLSGMIPRWLG-  392 (590)
Q Consensus       317 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~-  392 (590)
                      . +..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+....  +|+.|++++|.+.+..|..+. 
T Consensus       348 ~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          348 A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            3 446899999999999998 67778999999 999999999998 7787776655  899999999999998888888 


Q ss_pred             ------CCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCC--------cccEEECcCccCCCCC
Q 007762          393 ------NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--------SIEHVHLSKNMLHGQL  458 (590)
Q Consensus       393 ------~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------~L~~L~l~~n~~~~~~  458 (590)
                            .+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+...        +|+.|++++|.++ .+
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  503 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL  503 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence                  88899999999999995544557779999999999999995555555433        8999999999996 78


Q ss_pred             Ccccc-ccCCCCcEEEcCCCcCCCCccccccccCCCCEEEC------cCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762          459 KRGTF-FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLIL------GHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI  531 (590)
Q Consensus       459 ~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  531 (590)
                      |...+ ..+++|+.|++++|.+++ +|..+..+++|++|++      ++|++.+.+|..+..+++|+.|++++|++ +.+
T Consensus       504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i  581 (636)
T 4eco_A          504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV  581 (636)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence            87633 389999999999999997 8899999999999999      56788889999999999999999999999 578


Q ss_pred             ccccccCCccccccCCCCCCCccc
Q 007762          532 PPCFDNTTLHESYSNSSSPNKQFE  555 (590)
Q Consensus       532 p~~~~~l~~~~~~~~~~~~~~~~~  555 (590)
                      |..+.  +.+...+...+++.++.
T Consensus       582 p~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          582 NEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CHhHh--CcCCEEECcCCCCcccc
Confidence            88765  45556666666655544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-44  Score=387.36  Aligned_cols=445  Identities=17%  Similarity=0.206  Sum_probs=261.0

Q ss_pred             CCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCC-------CCC--CCCcccccCCCCCcEEEeeccccccc
Q 007762           19 KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGT-------NSS--KILDRGLCSLVHLQELYIYNNDLRGS   89 (590)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-------~~~--~~~~~~l~~l~~L~~L~L~~n~i~~~   89 (590)
                      .+++.|+|+++  .+.+.+|..+. .+++|++|+|++|.+..       .+.  .++...   +..|+ ++++++.+.+.
T Consensus        81 ~~V~~L~L~~~--~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~  153 (636)
T 4eco_A           81 GRVTGLSLEGF--GASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYD  153 (636)
T ss_dssp             CCEEEEECTTS--CCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCC
T ss_pred             CCEEEEEecCc--ccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccC
Confidence            57888888888  66788888877 88888888888885410       000  122111   33455 56665555544


Q ss_pred             CCccccC-------------------CCCCcEEEc--cccccccccCCCCccCCCCCcEEECcCCccccc----------
Q 007762           90 LPWCMAN-------------------MTSLRILYV--SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIP----------  138 (590)
Q Consensus        90 ~~~~~~~-------------------l~~L~~L~l--s~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~----------  138 (590)
                      .+..+..                   ...++.+.+  ..|.+++ +|. .+.++++|++|++++|.+.+.          
T Consensus       154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  231 (636)
T 4eco_A          154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENEN  231 (636)
T ss_dssp             GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred             chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccc
Confidence            4433331                   112222222  2456665 666 677778888888888777652          


Q ss_pred             -------cCccccc--cCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCC
Q 007762          139 -------ISLEPLF--NHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSH  209 (590)
Q Consensus       139 -------~~~~~l~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~  209 (590)
                             ++ ..+.  ++++|+.|++++|.+                            .+.+|..+.++++|++|++++
T Consensus       232 ~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l----------------------------~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          232 SEYAQQYKT-EDLKWDNLKDLTDVEVYNCPN----------------------------LTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             SHHHHHHTT-SCCCGGGCTTCCEEEEECCTT----------------------------CSSCCTTTTTCSSCCEEECTT
T ss_pred             cchhcccCc-hhhhhcccCCCCEEEecCCcC----------------------------CccChHHHhcCCCCCEEECcC
Confidence                   22 2333  555555555544432                            233556666777777777777


Q ss_pred             Cc-Ccc-ccchHHhhcC------CCCcEEEccCCCCCCCCcC--CCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEE
Q 007762          210 MK-MNG-EFPTWLLENN------TNLESLFLVNDSLAGPFRL--PIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL  279 (590)
Q Consensus       210 ~~-~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  279 (590)
                      |. +.+ .+|..+ ..+      ++|+.|++++|.+. .++.  .+..+++|+.|++++|.++|.+| .+.. +++|++|
T Consensus       283 n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~-l~~L~~L  358 (636)
T 4eco_A          283 NRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASL  358 (636)
T ss_dssp             CTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE-EEEESEE
T ss_pred             CCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC-CCCCCEE
Confidence            76 666 666665 333      66777777666666 4544  56666666666666666665666 3332 5566666


Q ss_pred             EccCceecccCCcccCCCCC-CcEEEccCcccccccchhhhc-CCCCCcEEEccCCcCCCccCcccc-------CccccC
Q 007762          280 NISMNALDGSIPSSFGNMKF-LQLLDVTNNQLTGEIPEHLAV-GCVNLEYLALSNNSLEGHMFSRNF-------NLTNLK  350 (590)
Q Consensus       280 ~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~  350 (590)
                      ++++|.++ .+|..+..+++ |++|++++|.+. .+|..+.. .+++|+.|++++|.+.+..|..+.       .+++|+
T Consensus       359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            66666666 56666666666 666666666665 55543321 122566666666666555554444       444555


Q ss_pred             ceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCc
Q 007762          351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN  430 (590)
Q Consensus       351 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~  430 (590)
                      +|++++|.+....+..+..+++|+.|++++|.++...+..+....                 ..+.++++|++|++++|.
T Consensus       437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-----------------EECTTGGGCCEEECCSSC
T ss_pred             EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-----------------ccccccCCccEEECcCCc
Confidence            555555555422222333445555555555554421111111111                 000111255555555555


Q ss_pred             CCCCCCCCC--CCCcccEEECcCccCCCCCCccccccCCCCcEEEc------CCCcCCCCccccccccCCCCEEECcCCc
Q 007762          431 ISGSLPSCF--HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL------SYNRLNGSISDWVDGLSQLSHLILGHNN  502 (590)
Q Consensus       431 l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l------s~n~l~~~~~~~~~~l~~L~~L~L~~n~  502 (590)
                      ++......+  .+++|+.|++++|.+++ +|.. +..+++|+.|++      ++|.+.+.+|.++..+++|++|++++|+
T Consensus       500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          500 LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             CCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             CCccChhhhhccCCCcCEEECCCCCCCC-cChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence            552222222  34555555555555544 5554 667778888888      5678888999999999999999999999


Q ss_pred             ccCCCcccccCCCCCCEEECcCCccCC
Q 007762          503 LEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       503 l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      + +.+|..+.  ++|+.|++++|++..
T Consensus       578 l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          578 I-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             C-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             C-CccCHhHh--CcCCEEECcCCCCcc
Confidence            9 47887765  899999999998874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.4e-41  Score=368.15  Aligned_cols=527  Identities=21%  Similarity=0.173  Sum_probs=375.7

Q ss_pred             ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc
Q 007762            9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG   88 (590)
Q Consensus         9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~   88 (590)
                      +||. .+.  +.+++|+|++|  .+.+..+..+. ++++|++|+|++|.++.    +++.+|.++++|++|+|++|++++
T Consensus        45 ~vP~-~lp--~~~~~LdLs~N--~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           45 KIPD-NLP--FSTKNLDLSFN--PLRHLGSYSFF-SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             SCCS-SSC--TTCCEEECTTS--CCCEECTTTTT-TCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ccCC-CCC--cCCCEEEeeCC--CCCCCCHHHHh-CCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCC
Confidence            5663 232  47899999999  44544455666 99999999999999975    777889999999999999999997


Q ss_pred             cCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCC
Q 007762           89 SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSP  168 (590)
Q Consensus        89 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~  168 (590)
                      ..+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+........+..+++|+.|++++|.+........
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence            66678999999999999999998 67766799999999999999998744344667889999999999998876543221


Q ss_pred             CCC-CCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCC------CCCCC
Q 007762          169 SLT-APNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDS------LAGPF  241 (590)
Q Consensus       169 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~------~~~~~  241 (590)
                      ... ........+++ ..+.+....+. ......++.+++.++.....++...+..+..++...+..+.      +....
T Consensus       194 ~~L~~l~~~~~~~~l-s~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  271 (635)
T 4g8a_A          194 RVLHQMPLLNLSLDL-SLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  271 (635)
T ss_dssp             HHHHTCTTCCCEEEC-TTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred             cchhhhhhhhhhhhc-ccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence            100 00112234455 44444443333 33445677888888766555556666788888876664332      22222


Q ss_pred             cCCCCCCCcccEEEccCCcCCC---CCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhh
Q 007762          242 RLPIHSHKRLRLLDISNNNFRG---HIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHL  318 (590)
Q Consensus       242 ~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  318 (590)
                      ...+.....++...+..+....   ..... +....+++.+.+..+.+....  .+.....++.|++.+|.+. .++.. 
T Consensus       272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~-  346 (635)
T 4g8a_A          272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL-  346 (635)
T ss_dssp             TTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC-
T ss_pred             ccccccccchhhhhhhhhhhcccccchhhh-hhhhccccccccccccccccc--ccccchhhhhhhccccccc-CcCcc-
Confidence            3334455556665555443221   11112 223568888888888776322  3456678888998888876 44332 


Q ss_pred             hcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccc--cCCccccCCCCCCEEEccCCcccccCccccCCCCC
Q 007762          319 AVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTR  396 (590)
Q Consensus       319 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  396 (590)
                        .+..|+.+.+..|.....  .....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+.... .+..+..+++
T Consensus       347 --~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~  421 (635)
T 4g8a_A          347 --KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQ  421 (635)
T ss_dssp             --BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTT
T ss_pred             --cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccccc
Confidence              367788888888876543  234467888888888887653  344555677888889888887764 3456778888


Q ss_pred             ccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762          397 LQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL  474 (590)
Q Consensus       397 L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  474 (590)
                      |+.+++..+......+ ..|..+++++.++++.|.+.+..+..+. .+.++.|++++|.....+.+..+..+++|+.|+|
T Consensus       422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L  501 (635)
T 4g8a_A          422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  501 (635)
T ss_dssp             CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence            9999988887665443 4577888899999999888877666554 6788899998887655555555888889999999


Q ss_pred             CCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccC-CccccccCCCCCCCc
Q 007762          475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT-TLHESYSNSSSPNKQ  553 (590)
Q Consensus       475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~~~~~~~~~~~~~~  553 (590)
                      ++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+ +.+.           
T Consensus       502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~-----------  570 (635)
T 4g8a_A          502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-----------  570 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC-----------
T ss_pred             CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC-----------
Confidence            9999988888888889999999999999987777888888999999999999988888877764 2222           


Q ss_pred             cceeccccCCCCCCCCCccccc
Q 007762          554 FEIFFFIQGPQGHPRLATLVMN  575 (590)
Q Consensus       554 ~~~~~~~~~~~~np~~~~~~~~  575 (590)
                            .....|||..|+|.+.
T Consensus       571 ------~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          571 ------FLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             ------EEECTTCCBCCSGGGH
T ss_pred             ------EEEeeCCCCcccCCcH
Confidence                  2234577777776643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-43  Score=370.56  Aligned_cols=450  Identities=20%  Similarity=0.197  Sum_probs=297.5

Q ss_pred             CeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCc
Q 007762           22 ELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLR  101 (590)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  101 (590)
                      ++|+++++++  . .+|..++   ++|++|++++|.+.+    +++.+|..+++|++|++++|.+++..|.+|.++++|+
T Consensus         3 ~~l~ls~n~l--~-~ip~~~~---~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGL--I-HVPKDLS---QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCC--S-SCCCSCC---TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             ceEecCCCCc--c-ccccccc---ccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence            5788999844  3 5776554   789999999998875    6667888999999999999999877788899999999


Q ss_pred             EEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEe
Q 007762          102 ILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLS  181 (590)
Q Consensus       102 ~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~  181 (590)
                      +|++++|.++ .+|..   .+++|++|++++|.+.+......+.++++|+.|++++|.+...                  
T Consensus        73 ~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------------------  130 (520)
T 2z7x_B           73 YLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------------------  130 (520)
T ss_dssp             EEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------------------
T ss_pred             EEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------------------
Confidence            9999999988 77773   7888999999888876321124455555555555555543210                  


Q ss_pred             ccCCCCCCCcCChhccCCCcc--cEEEcCCCcC--ccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCC-cccEEEc
Q 007762          182 LSSGYGDGVIFPKFLYHQHDL--EYVDLSHMKM--NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK-RLRLLDI  256 (590)
Q Consensus       182 l~~~~~~~~~~~~~l~~~~~L--~~L~ls~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l  256 (590)
                                   .+..+++|  ++|++++|.+  .+..|                         ..+..+. ....+++
T Consensus       131 -------------~~~~l~~L~L~~L~l~~n~l~~~~~~~-------------------------~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B          131 -------------SVLPIAHLNISKVLLVLGETYGEKEDP-------------------------EGLQDFNTESLHIVF  172 (520)
T ss_dssp             -------------GGGGGTTSCEEEEEEEECTTTTSSCCT-------------------------TTTTTCCEEEEEEEC
T ss_pred             -------------hccccccceeeEEEeeccccccccccc-------------------------ccccccccceEEEEe
Confidence                         11222333  5555555544  33333                         3332222 1223344


Q ss_pred             cCCcCCCCCchhhhhcCCCCcEEEccCce-------ecccCCcccCCCCCCcEEEccCcccccccchhhhc--CCCCCcE
Q 007762          257 SNNNFRGHIPVEIGDVLPGLFSLNISMNA-------LDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV--GCVNLEY  327 (590)
Q Consensus       257 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-------~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~  327 (590)
                      ++|.+.+.++......+++|+.+++++|.       +.+.++ .++.+++|++|++++|.+.+..+..+..  ..++|++
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~  251 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY  251 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence            44444444443333334555555555544       333333 4556666666666666555332221110  1346777


Q ss_pred             EEccCCcCCCccCccc-----cCccccCceeccCccccccCC-ccccCC---CCCCEEEccCCcccccCccccCCCCCcc
Q 007762          328 LALSNNSLEGHMFSRN-----FNLTNLKWLQLEGNHFVGEIP-QSLSKC---FVLEGLFLNNNSLSGMIPRWLGNLTRLQ  398 (590)
Q Consensus       328 L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~  398 (590)
                      |++++|.+.+..|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|+
T Consensus       252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~  327 (520)
T 2z7x_B          252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence            7777777666566655     6677777777777766  333 333332   56777777777765332  125677777


Q ss_pred             EEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC--CCCC-CCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcC
Q 007762          399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG--SLPS-CFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS  475 (590)
Q Consensus       399 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls  475 (590)
                      +|++++|.+.+..|..+..+++|++|++++|.+++  ..|. ...+++|++|++++|.+.+.++...+..+++|+.|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            77777777777677777777777888887777764  2222 22367788888888887665777768889999999999


Q ss_pred             CCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccc-cccCCccccccCCCCC
Q 007762          476 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC-FDNTTLHESYSNSSSP  550 (590)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~  550 (590)
                      +|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..++.+...+...++
T Consensus       408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          408 SNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             SSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            9999988777665  79999999999999 78888889999999999999999 46655 7666555444433333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.7e-42  Score=373.78  Aligned_cols=312  Identities=21%  Similarity=0.295  Sum_probs=178.1

Q ss_pred             CChhccCCCcccEEEcCCCc-Ccc-ccchHHh------hcCCCCcEEEccCCCCCCCCcC--CCCCCCcccEEEccCCcC
Q 007762          192 FPKFLYHQHDLEYVDLSHMK-MNG-EFPTWLL------ENNTNLESLFLVNDSLAGPFRL--PIHSHKRLRLLDISNNNF  261 (590)
Q Consensus       192 ~~~~l~~~~~L~~L~ls~~~-~~~-~~~~~~~------~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~l  261 (590)
                      +|..+.++++|+.|++++|. +.+ .+|..+.      ..+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.+
T Consensus       507 iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l  585 (876)
T 4ecn_A          507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV  585 (876)
T ss_dssp             CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC
T ss_pred             ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc
Confidence            44455555555556665555 554 4554331      12235666666666555 3444  455556666666666655


Q ss_pred             CCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCC-CcEEEccCcccccccchhhhcCC--CCCcEEEccCCcCCCc
Q 007762          262 RGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF-LQLLDVTNNQLTGEIPEHLAVGC--VNLEYLALSNNSLEGH  338 (590)
Q Consensus       262 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~i~~~  338 (590)
                      + .+| .+.. +++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+. ..  ++|+.|++++|.+.+.
T Consensus       586 ~-~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          586 R-HLE-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             C-BCC-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTT
T ss_pred             c-cch-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCc
Confidence            5 555 3322 556666666666655 55555566665 666666666655 5553322 12  2366666666666554


Q ss_pred             cCccc---c--CccccCceeccCccccccCCc-cccCCCCCCEEEccCCcccccCccc-cC-------CCCCccEEECCC
Q 007762          339 MFSRN---F--NLTNLKWLQLEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSLSGMIPRW-LG-------NLTRLQHIMMPK  404 (590)
Q Consensus       339 ~~~~~---~--~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~-~~-------~l~~L~~L~L~~  404 (590)
                      ++...   .  .+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+|.. +.       ++++|+.|+|++
T Consensus       660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred             cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence            33211   1  2346777777777776 3443 3346677777777777776 33332 22       233788888888


Q ss_pred             CcCcCCCCcccC--CCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762          405 NHLEGPIPVEFC--QLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS  482 (590)
Q Consensus       405 n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  482 (590)
                      |.+. .+|..+.  .+++|+.|++++|.+++.+.....+++|+.|++++|+                   ++++|.+.+.
T Consensus       738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~-------------------~ls~N~l~~~  797 (876)
T 4ecn_A          738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR-------------------DAEGNRILRQ  797 (876)
T ss_dssp             SCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB-------------------CTTCCBCCCC
T ss_pred             CCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC-------------------Cccccccccc
Confidence            8777 5666665  7777888888777776532223334444444444432                   2234666666


Q ss_pred             ccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcccc
Q 007762          483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF  535 (590)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  535 (590)
                      +|.++..+++|++|+|++|++ +.+|..+.  ++|+.|++++|++...-+..+
T Consensus       798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            676777777777777777777 46666544  567777777777665444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.8e-41  Score=355.73  Aligned_cols=465  Identities=20%  Similarity=0.156  Sum_probs=281.4

Q ss_pred             CCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcccc
Q 007762           16 PHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMA   95 (590)
Q Consensus        16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~   95 (590)
                      ..|...++++++++.+  . .+|..++   ++|++|++++|.++.    +++.+|..+++|++|++++|.+++..|.+|.
T Consensus        28 ~~~~~~~~l~ls~~~L--~-~ip~~~~---~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   97 (562)
T 3a79_B           28 FSNELESMVDYSNRNL--T-HVPKDLP---PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRSLDFHVFL   97 (562)
T ss_dssp             -----CCEEECTTSCC--C-SCCTTSC---TTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred             cccCCCcEEEcCCCCC--c-cCCCCCC---CCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence            4455668999999954  4 5776554   789999999999976    7778999999999999999999988889999


Q ss_pred             CCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCc
Q 007762           96 NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNF  175 (590)
Q Consensus        96 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~  175 (590)
                      ++++|++|++++|.++ .+|..   .+++|++|++++|.+.+......+.++++|+.|++++|.+.....    ......
T Consensus        98 ~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L  169 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHL  169 (562)
T ss_dssp             TCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTS
T ss_pred             CCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhc
Confidence            9999999999999998 88873   799999999999998742223678899999999999988754211    011111


Q ss_pred             ccceEeccCCCCC--CCcCChhccCCC-cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC----CCcCCCCCC
Q 007762          176 QLSRLSLSSGYGD--GVIFPKFLYHQH-DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG----PFRLPIHSH  248 (590)
Q Consensus       176 ~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~  248 (590)
                      +|+.|++ ..+.+  .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|...-    .....+..+
T Consensus       170 ~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l  248 (562)
T 3a79_B          170 HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG  248 (562)
T ss_dssp             CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred             eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence            3366666 44444  444455544433 111345555555544444444455556666665553100    001123344


Q ss_pred             CcccEEEccCCcCCCCCchhhh--hcCCCCcEEEccCceecccCCccc-----CCCCCCcEEEccCcccccccchhhhcC
Q 007762          249 KRLRLLDISNNNFRGHIPVEIG--DVLPGLFSLNISMNALDGSIPSSF-----GNMKFLQLLDVTNNQLTGEIPEHLAVG  321 (590)
Q Consensus       249 ~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~~  321 (590)
                      ++|+.+++.++.+.+.....+.  ...++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+|......
T Consensus       249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~  326 (562)
T 3a79_B          249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS  326 (562)
T ss_dssp             SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred             CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh
Confidence            5555555555444321111110  012355666666655555555544     3334444444443333  223111100


Q ss_pred             ---CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCcc
Q 007762          322 ---CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ  398 (590)
Q Consensus       322 ---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~  398 (590)
                         ..+|+.|++++|.+..                        ..  ....+++|++|++++|.+++..+..+..+++|+
T Consensus       327 ~~~~~~L~~L~l~~n~~~~------------------------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  380 (562)
T 3a79_B          327 VFAEMNIKMLSISDTPFIH------------------------MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ  380 (562)
T ss_dssp             HHHTCCCSEEEEESSCCCC------------------------CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC
T ss_pred             hhccCcceEEEccCCCccc------------------------cc--CccCCCCceEEECCCCccccchhhhhcccCCCC
Confidence               1334455555444432                        11  113445555555555555554555555555555


Q ss_pred             EEECCCCcCcCCC--CcccCCCCCCcEEEcccCcCCCCCCC-CC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762          399 HIMMPKNHLEGPI--PVEFCQLDWLQILDISDNNISGSLPS-CF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL  474 (590)
Q Consensus       399 ~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  474 (590)
                      .|++++|.+.+..  |..+..+++|++|++++|.+++.++. .+ .+++|++|++++|.+++.++.. +.  ++|+.|++
T Consensus       381 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L  457 (562)
T 3a79_B          381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDL  457 (562)
T ss_dssp             EEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEEC
T ss_pred             EEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEEC
Confidence            5555555555321  23455555566666666655542222 12 2455666666666654444433 22  68999999


Q ss_pred             CCCcCCCCccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCCccCCCCc
Q 007762          475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      ++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus       458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            999998 66766668999999999999998 56655 8899999999999999987655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-40  Score=361.31  Aligned_cols=356  Identities=18%  Similarity=0.197  Sum_probs=303.7

Q ss_pred             CCCCCcCChhccCCCcccEEEcCCCcCcc-----------------ccchHH-hhcCCCCcEEEccCCCCCCCCcCCCCC
Q 007762          186 YGDGVIFPKFLYHQHDLEYVDLSHMKMNG-----------------EFPTWL-LENNTNLESLFLVNDSLAGPFRLPIHS  247 (590)
Q Consensus       186 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~  247 (590)
                      +.+.+ +|..+.++++|+.|++++|.+.+                 .+|..+ |.++++|+.|++++|.+.+.+|..+..
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            45555 78899999999999999999987                 388876 349999999999999999999999999


Q ss_pred             CCcccEEEccCCc-CCC-CCchhhhh------cCCCCcEEEccCceecccCCc--ccCCCCCCcEEEccCcccccccchh
Q 007762          248 HKRLRLLDISNNN-FRG-HIPVEIGD------VLPGLFSLNISMNALDGSIPS--SFGNMKFLQLLDVTNNQLTGEIPEH  317 (590)
Q Consensus       248 ~~~L~~L~l~~n~-l~~-~~~~~~~~------~~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~  317 (590)
                      +++|+.|++++|. +++ .+|..+..      .+++|+.|++++|.++ .+|.  .++.+++|++|++++|.+. .+|  
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--  589 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--  589 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence            9999999999998 887 78876654      2359999999999999 8888  8999999999999999998 888  


Q ss_pred             hhcCCCCCcEEEccCCcCCCccCccccCccc-cCceeccCccccccCCccccCCCC--CCEEEccCCcccccCcccc---
Q 007762          318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTN-LKWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSLSGMIPRWL---  391 (590)
Q Consensus       318 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~~~~~~~~~~---  391 (590)
                      .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.....  |+.|++++|.+.+.+|...   
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence            4456899999999999998 67888999999 999999999998 77877776654  9999999999987665322   


Q ss_pred             C--CCCCccEEECCCCcCcCCCCcc-cCCCCCCcEEEcccCcCCCCCCCCCCCC--------cccEEECcCccCCCCCCc
Q 007762          392 G--NLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPL--------SIEHVHLSKNMLHGQLKR  460 (590)
Q Consensus       392 ~--~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------~L~~L~l~~n~~~~~~~~  460 (590)
                      .  .+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+....+..+...        +|+.|++++|.+. .+|.
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~  745 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD  745 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred             ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence            2  3458999999999999 45554 5689999999999999995555555433        8999999999996 7887


Q ss_pred             cccc--cCCCCcEEEcCCCcCCCCccccccccCCCCEEECcC------CcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          461 GTFF--NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH------NNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       461 ~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      . +.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|++++|++ +.+|
T Consensus       746 ~-l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          746 D-FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             G-GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             H-hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence            6 54  89999999999999996 788899999999999976      888889999999999999999999999 6888


Q ss_pred             cccccCCccccccCCCCCCCccc
Q 007762          533 PCFDNTTLHESYSNSSSPNKQFE  555 (590)
Q Consensus       533 ~~~~~l~~~~~~~~~~~~~~~~~  555 (590)
                      ..+.  +.+...+...+++..+.
T Consensus       823 ~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          823 EKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             SCCC--SSSCEEECCSCTTCEEE
T ss_pred             Hhhc--CCCCEEECCCCCCCccC
Confidence            8765  35555666667665444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.3e-39  Score=349.62  Aligned_cols=505  Identities=20%  Similarity=0.182  Sum_probs=374.6

Q ss_pred             CCCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEE
Q 007762            1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELY   80 (590)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~   80 (590)
                      +|+|+++ +||+.+|+++++|++|+|++|+  +.+..+..+. .+++|++|+|++|.++.    +++..|.++++|++|+
T Consensus        59 Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~-~L~~L~~L~Ls~N~l~~----l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           59 LSFNPLR-HLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQ-SLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLV  130 (635)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEECTTCC--CCEECTTTTT-TCTTCCEEECTTCCCCE----ECGGGGTTCTTCCEEE
T ss_pred             eeCCCCC-CCCHHHHhCCCCCCEEECCCCc--CCCcChhHhc-CCCCCCEEEccCCcCCC----CCHHHhcCCCCCCEEE
Confidence            4677776 5666899999999999999994  4444444455 99999999999999975    7878899999999999


Q ss_pred             eecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCc----cEEEcc
Q 007762           81 IYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRL----KVFWAK  156 (590)
Q Consensus        81 L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L----~~l~l~  156 (590)
                      |++|.+++..+.+|+++++|++|++++|.+++.-....+..+++|++|++++|.+.+ +....+..+.++    ..++++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhcc
Confidence            999999977777899999999999999998732223367889999999999999874 333455444433    467788


Q ss_pred             CCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCc-----cccchHHhhcCCCCcEEE
Q 007762          157 NNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMN-----GEFPTWLLENNTNLESLF  231 (590)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~-----~~~~~~~~~~l~~L~~L~  231 (590)
                      .|.+......    ......++.+++..........+..+..+..++...+......     .......+..+..+....
T Consensus       210 ~n~l~~i~~~----~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  285 (635)
T 4g8a_A          210 LNPMNFIQPG----AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  285 (635)
T ss_dssp             TCCCCEECTT----TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred             cCcccccCcc----cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence            8877654322    2233356666663222222223445566677666555322111     011112234455566555


Q ss_pred             ccCCCCCC---CCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCc
Q 007762          232 LVNDSLAG---PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN  308 (590)
Q Consensus       232 l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  308 (590)
                      +..+....   .....+.....++.+.+.++.+. .++..  .....++.|++.+|.+....+   ..++.|+.+++..|
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n  359 (635)
T 4g8a_A          286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDF--SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN  359 (635)
T ss_dssp             EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGG--GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred             hhhhhhcccccchhhhhhhhcccccccccccccc-ccccc--ccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence            54433222   22334556778899999988776 33322  226789999999998874433   34577889999988


Q ss_pred             ccccccchhhhcCCCCCcEEEccCCcCCC--ccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCccccc
Q 007762          309 QLTGEIPEHLAVGCVNLEYLALSNNSLEG--HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM  386 (590)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  386 (590)
                      ... ..+...  .+++|+.++++.|.+..  ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+.....
T Consensus       360 ~~~-~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~  435 (635)
T 4g8a_A          360 KGG-NAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM  435 (635)
T ss_dssp             CSC-CBCCCC--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEEST
T ss_pred             cCC-CCcccc--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccc
Confidence            876 333222  48899999999998763  234445567889999999888763 455677899999999998876655


Q ss_pred             Cc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC-CCCCCCCC-CCcccEEECcCccCCCCCCcccc
Q 007762          387 IP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS-GSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTF  463 (590)
Q Consensus       387 ~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~  463 (590)
                      .+ ..+..+++++.++++.|.+.+..+..+..++.|+.|++++|.+. ...|..+. +++|++|++++|.+++ +++..|
T Consensus       436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f  514 (635)
T 4g8a_A          436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAF  514 (635)
T ss_dssp             TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTT
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHH
Confidence            43 46788999999999999999888888999999999999999754 34555544 7899999999999964 444559


Q ss_pred             ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCC-CCCCEEECcCCccCC
Q 007762          464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNNLHG  529 (590)
Q Consensus       464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~  529 (590)
                      .++++|++|+|++|++++..+..|.++++|++|++++|++++..|..+..+ ++|+.|++++|++..
T Consensus       515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            999999999999999998888999999999999999999999999999988 589999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.7e-40  Score=348.55  Aligned_cols=456  Identities=19%  Similarity=0.170  Sum_probs=351.4

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT  123 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~  123 (590)
                      .+...++++++++.++.    +|. .+.  ++|++|++++|.+.+..+..|.++++|++|++++|.++ .++...+.+++
T Consensus        29 ~~~~~~~l~ls~~~L~~----ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~  100 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH----VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQ  100 (562)
T ss_dssp             ----CCEEECTTSCCCS----CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCT
T ss_pred             ccCCCcEEEcCCCCCcc----CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCC
Confidence            45566999999999875    664 343  78999999999999777789999999999999999998 55444899999


Q ss_pred             CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762          124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE  203 (590)
Q Consensus       124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  203 (590)
                      +|++|++++|.+. .++..   .+++|+.|++++|.+...                           ..|..+..+++|+
T Consensus       101 ~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l---------------------------~~p~~~~~l~~L~  149 (562)
T 3a79_B          101 DLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVL---------------------------PVCKEFGNLTKLT  149 (562)
T ss_dssp             TCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBC---------------------------CCCGGGGGCTTCC
T ss_pred             CCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCcccc---------------------------CchHhhcccCccc
Confidence            9999999999987 45533   788888888888765321                           2456788899999


Q ss_pred             EEEcCCCcCccccchHHhhcCCCC--cEEEccCCCC--CCCCcCCCCCCC-cccEEEccCCcCCCCCchhhhhcCCCCcE
Q 007762          204 YVDLSHMKMNGEFPTWLLENNTNL--ESLFLVNDSL--AGPFRLPIHSHK-RLRLLDISNNNFRGHIPVEIGDVLPGLFS  278 (590)
Q Consensus       204 ~L~ls~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  278 (590)
                      +|++++|.+.+..    +..+++|  +.|++++|.+  .+..+..+..+. ..-.+++++|.+.+.++......+++|+.
T Consensus       150 ~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~  225 (562)
T 3a79_B          150 FLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL  225 (562)
T ss_dssp             EEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred             EEecCCCccccCc----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence            9999999987532    3455666  9999999998  666666555543 12256888888877777666555789999


Q ss_pred             EEccCce-----ecccCCcccCCCCCCcEEEccCcccccc----cchhhhcCCCCCcEEEccCCcCCCccCccc-----c
Q 007762          279 LNISMNA-----LDGSIPSSFGNMKFLQLLDVTNNQLTGE----IPEHLAVGCVNLEYLALSNNSLEGHMFSRN-----F  344 (590)
Q Consensus       279 L~L~~n~-----~~~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-----~  344 (590)
                      +++++|.     +. .....+..++.|+.+++.++.+.+.    ++...  ..++|++|++++|.+.+.+|..+     .
T Consensus       226 L~l~~n~~~~~~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~  302 (562)
T 3a79_B          226 SNIKLNDENCQRLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSET  302 (562)
T ss_dssp             EEEECCSTTHHHHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred             ecccccccccchHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccc
Confidence            9999874     22 2233567788999999988876643    22222  24699999999999998777766     5


Q ss_pred             CccccCceeccCccccccCC-cccc---CCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCC
Q 007762          345 NLTNLKWLQLEGNHFVGEIP-QSLS---KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW  420 (590)
Q Consensus       345 ~l~~L~~L~l~~~~~~~~~~-~~l~---~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  420 (590)
                      .++.|+.+++..+.+  .+| ..+.   ...+|+.|++++|.+....  ....+++|++|++++|.+.+..|..+..+++
T Consensus       303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  378 (562)
T 3a79_B          303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR  378 (562)
T ss_dssp             SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred             cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC
Confidence            566666666666555  233 2221   2267999999999986432  2368899999999999999888999999999


Q ss_pred             CcEEEcccCcCCCCC--CC-CCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEE
Q 007762          421 LQILDISDNNISGSL--PS-CFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLI  497 (590)
Q Consensus       421 L~~L~l~~n~l~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  497 (590)
                      |++|++++|.+++..  +. ...+++|+.|++++|.+.+.++...+..+++|+.|++++|.+++..|..+.  ++|++|+
T Consensus       379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~  456 (562)
T 3a79_B          379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD  456 (562)
T ss_dssp             CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred             CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence            999999999998643  22 335789999999999998768888789999999999999999887776654  7999999


Q ss_pred             CcCCcccCCCcccccCCCCCCEEECcCCccCCCCccc-cccCCccccccCCCCCCCc
Q 007762          498 LGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC-FDNTTLHESYSNSSSPNKQ  553 (590)
Q Consensus       498 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~  553 (590)
                      +++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..++.+...+...+|..+
T Consensus       457 L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          457 LHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence            9999999 78888889999999999999999 46665 7777666655555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-37  Score=320.36  Aligned_cols=378  Identities=18%  Similarity=0.198  Sum_probs=229.0

Q ss_pred             CCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEE
Q 007762           74 VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVF  153 (590)
Q Consensus        74 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l  153 (590)
                      ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++|.+.+ .....+.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEE
Confidence            3455555555555444444455555555555555544434433344455555555555554431 111233333334443


Q ss_pred             EccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEcc
Q 007762          154 WAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLV  233 (590)
Q Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~  233 (590)
                      ++++|.+.+...                          ....+..+++|++|++++|.+.+..|..++.++++|+.|+++
T Consensus       109 ~L~~n~l~~~~~--------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A          109 TLTQCNLDGAVL--------------------------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             ECTTSCCBTHHH--------------------------HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             eCCCCCCCcccc--------------------------CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            333333221100                          011244556677777777776655555545666777777777


Q ss_pred             CCCCCCCCcCCCCCC--CcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccc
Q 007762          234 NDSLAGPFRLPIHSH--KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT  311 (590)
Q Consensus       234 ~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  311 (590)
                      +|.+.+..+..+..+  .+|+.|++++|.+.+..+..+.                 ......+..+++|++|++++|.+.
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~-----------------~~~~~~~~~~~~L~~L~Ls~n~l~  225 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG-----------------WEKCGNPFKNTSITTLDLSGNGFK  225 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT-----------------HHHHCCTTTTCEEEEEECTTSCCC
T ss_pred             CCcccccChhhhhccccccccccccccCcccccchhhcc-----------------ccccccccccceeeeEecCCCccc
Confidence            776666555544443  4566666666655422111110                 001112345567888888888877


Q ss_pred             cccchhhhcC--CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCcccc--CCCCCCEEEccCCcccccC
Q 007762          312 GEIPEHLAVG--CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS--KCFVLEGLFLNNNSLSGMI  387 (590)
Q Consensus       312 ~~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~n~~~~~~  387 (590)
                      +..+..+...  ..+|+.|++++|...+....              .+.+....+..+.  ..++|+.|++++|.+.+..
T Consensus       226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence            6666554321  36788888887765542110              0111111111111  2357778888888877777


Q ss_pred             ccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCC
Q 007762          388 PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYH  467 (590)
Q Consensus       388 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  467 (590)
                      +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.                        .++...+..++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~  347 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG------------------------SIDSRMFENLD  347 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------------------EECGGGGTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC------------------------CcChhHhcCcc
Confidence            777777778888888887777666667777777777777777664                        33333477889


Q ss_pred             CCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcc
Q 007762          468 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP  533 (590)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  533 (590)
                      +|+.|++++|.+++..|.+|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999988899999999999999999999976667789999999999999999998873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.9e-37  Score=315.45  Aligned_cols=397  Identities=22%  Similarity=0.273  Sum_probs=175.0

Q ss_pred             CCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCC
Q 007762           45 MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTS  124 (590)
Q Consensus        45 l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~  124 (590)
                      .++|++|++++|.+ +   ++| .+++++++|++|++++|.+.+.+|..++++++|+.+++.+|..            .+
T Consensus        10 ~~~L~~L~l~~n~l-~---~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~   72 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-T---EMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQ   72 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HT
T ss_pred             cccchhhhcccCch-h---hCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cC
Confidence            45677777777776 3   355 4577777777777777777767777777666553333332211            12


Q ss_pred             CcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccE
Q 007762          125 IEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEY  204 (590)
Q Consensus       125 L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  204 (590)
                      +++|++++|.+++ ++.    ..++|+.+++++|.+.+                             +|..   .++|++
T Consensus        73 l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-----------------------------lp~~---~~~L~~  115 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-----------------------------LPEL---PQSLKS  115 (454)
T ss_dssp             CSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-----------------------------CCCC---CTTCCE
T ss_pred             CCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-----------------------------cccc---cCCCcE
Confidence            3444444444331 110    11333344333333221                             1111   134555


Q ss_pred             EEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCc
Q 007762          205 VDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN  284 (590)
Q Consensus       205 L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n  284 (590)
                      |++++|.+. .++.    ..++|++|++++|.+.+ ++ .+..+++|++|++++|.++ .+|..    .++|++|++++|
T Consensus       116 L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n  183 (454)
T 1jl5_A          116 LLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNN  183 (454)
T ss_dssp             EECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSS
T ss_pred             EECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCC
Confidence            555555544 2221    11455555555555554 33 3555556666666665555 23321    235666666666


Q ss_pred             eecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCC
Q 007762          285 ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP  364 (590)
Q Consensus       285 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  364 (590)
                      .+++ +| .++.+++|++|++++|.+. .+|..    .++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ +|
T Consensus       184 ~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~  253 (454)
T 1jl5_A          184 QLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LP  253 (454)
T ss_dssp             CCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred             cCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cc
Confidence            5553 33 3555666666666666555 33321    2356666666665552 33 25556666666666665553 22


Q ss_pred             ccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcc
Q 007762          365 QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSI  444 (590)
Q Consensus       365 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L  444 (590)
                      .   ..++|+.|++++|.+++ +|..   .++|+.|++++|.+.+. +.   ..++|++|++++|.+++.. .  .+.+|
T Consensus       254 ~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~-~--~~~~L  319 (454)
T 1jl5_A          254 D---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC-D--LPPSL  319 (454)
T ss_dssp             S---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC-C--CCTTC
T ss_pred             c---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc-C--CcCcC
Confidence            2   12556666666666553 2222   25566666666665531 11   1145666666666655321 1  12356


Q ss_pred             cEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC--CCcccccCC--------
Q 007762          445 EHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKL--------  514 (590)
Q Consensus       445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l--------  514 (590)
                      +.|++++|.+.+ ++..    +++|+.|++++|.++ .+|.   .+++|++|++++|++++  .+|..+..+        
T Consensus       320 ~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~  390 (454)
T 1jl5_A          320 EELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE  390 (454)
T ss_dssp             CEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred             CEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence            666666666642 4432    356666666666666 3443   24566666666666665  455555555        


Q ss_pred             -----CCCCEEECcCCccCC--CCccccccCCc
Q 007762          515 -----NQLQLLDLSNNNLHG--PIPPCFDNTTL  540 (590)
Q Consensus       515 -----~~L~~L~l~~n~l~~--~~p~~~~~l~~  540 (590)
                           ++|+.|++++|++++  .+|.++..+..
T Consensus       391 i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~  423 (454)
T 1jl5_A          391 VPELPQNLKQLHVETNPLREFPDIPESVEDLRM  423 (454)
T ss_dssp             ---------------------------------
T ss_pred             cccccCcCCEEECCCCcCCccccchhhHhheeC
Confidence                 789999999999997  78888877654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.6e-36  Score=309.04  Aligned_cols=367  Identities=19%  Similarity=0.160  Sum_probs=224.3

Q ss_pred             CCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccccc-CCccccCCCCCcEEEccccccccccCCCCccCCCC
Q 007762           46 PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS-LPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTS  124 (590)
Q Consensus        46 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~  124 (590)
                      ++|++|+|++|.+++    +.+..|..+++|++|++++|.+.+. .+..|.++++|++|++++|.+++..+. .+.++++
T Consensus        30 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~  104 (455)
T 3v47_A           30 AHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLAN  104 (455)
T ss_dssp             TTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTT
T ss_pred             CccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCccc
Confidence            345555555555543    3334455555555555555554422 234455555555555555555422222 4555555


Q ss_pred             CcEEECcCCccccccC-ccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChh-ccCCCcc
Q 007762          125 IEELHLSNNHFQIPIS-LEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF-LYHQHDL  202 (590)
Q Consensus       125 L~~L~ls~n~~~~~~~-~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L  202 (590)
                      |++|++++|.+.+..+ ...+..+++|+.|++++|.+...                            .|.. +..+++|
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------------~~~~~~~~l~~L  156 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI----------------------------QPASFFLNMRRF  156 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC----------------------------CCCGGGGGCTTC
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc----------------------------CcccccCCCCcc
Confidence            5555555555443111 12244455555555544443211                            1222 4455566


Q ss_pred             cEEEcCCCcCccccchHHhhcC--CCCcEEEccCCCCCCCCcCC--------CCCCCcccEEEccCCcCCCCCchhhhhc
Q 007762          203 EYVDLSHMKMNGEFPTWLLENN--TNLESLFLVNDSLAGPFRLP--------IHSHKRLRLLDISNNNFRGHIPVEIGDV  272 (590)
Q Consensus       203 ~~L~ls~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~~  272 (590)
                      ++|++++|.+.+..+..+ ..+  .+|+.|++++|.+.+..+..        +..+++|+.|++++|.+++..+..+...
T Consensus       157 ~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CEEECTTCCBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             cEEeCCCCcccccChhhh-hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            666666666554444332 232  46666666666665543322        3456789999999999887777766543


Q ss_pred             --CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccC
Q 007762          273 --LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLK  350 (590)
Q Consensus       273 --~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  350 (590)
                        .++|+.|++++|...+.... ...++.+     ...    .+.   ....++|+.|++++|.+.+..+..+..+++|+
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~-----~~~----~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  302 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFG-HTNFKDP-----DNF----TFK---GLEASGVKTCDLSKSKIFALLKSVFSHFTDLE  302 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTT-CCSSCCC-----CTT----TTG---GGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccccceeeEeeccccccccccc-hhhhccC-----ccc----ccc---cccccCceEEEecCccccccchhhcccCCCCC
Confidence              26899999988875532111 1111110     000    000   01246788888888888777777777888888


Q ss_pred             ceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCc
Q 007762          351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN  430 (590)
Q Consensus       351 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~  430 (590)
                      +|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus       303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            88888888877777778888888888888888877777778888888888888888877777788888888888888888


Q ss_pred             CCCCCCCCC-CCCcccEEECcCccCCCCCC
Q 007762          431 ISGSLPSCF-HPLSIEHVHLSKNMLHGQLK  459 (590)
Q Consensus       431 l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~  459 (590)
                      +++..+..+ .+++|+.|++++|++.+..+
T Consensus       383 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            887666554 36788888888888876665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.1e-36  Score=306.04  Aligned_cols=413  Identities=21%  Similarity=0.240  Sum_probs=216.1

Q ss_pred             CCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCC-------------CcEEEeecc
Q 007762           18 FKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVH-------------LQELYIYNN   84 (590)
Q Consensus        18 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~-------------L~~L~L~~n   84 (590)
                      .++|++|+++++  .+ +.+|..+. .+++|++|++++|.+.+   .++ ..++.+.+             +++|++++|
T Consensus        10 ~~~L~~L~l~~n--~l-~~iP~~i~-~L~~L~~L~l~~n~~~~---~~p-~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A           10 NTFLQEPLRHSS--NL-TEMPVEAE-NVKSKTEYYNAWSEWER---NAP-PGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHH---TSC-TTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             cccchhhhcccC--ch-hhCChhHh-cccchhhhhccCCcccc---cCC-cccccchhcchhhhhhhhccCCCEEEecCC
Confidence            356666666666  33 56666665 66666666666665544   233 44555544             377777777


Q ss_pred             cccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccc
Q 007762           85 DLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEI  164 (590)
Q Consensus        85 ~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  164 (590)
                      .+++ +|..   .++|++|++++|.++ .+|. .   +++|++|++++|.+.+ ++  .  ..++|++|++++|.+    
T Consensus        82 ~l~~-lp~~---~~~L~~L~l~~n~l~-~lp~-~---~~~L~~L~l~~n~l~~-l~--~--~~~~L~~L~L~~n~l----  143 (454)
T 1jl5_A           82 GLSS-LPEL---PPHLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLKA-LS--D--LPPLLEYLGVSNNQL----  143 (454)
T ss_dssp             CCSC-CCSC---CTTCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCSC-CC--S--CCTTCCEEECCSSCC----
T ss_pred             cccc-CCCC---cCCCCEEEccCCcCC-cccc-c---cCCCcEEECCCCccCc-cc--C--CCCCCCEEECcCCCC----
Confidence            7663 3432   356777777777776 3554 1   3667777777776652 11  0  013455555544432    


Q ss_pred             cCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCC
Q 007762          165 TQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP  244 (590)
Q Consensus       165 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  244 (590)
                                              .+ +| .+..+++|++|++++|.+. .+|.    ...+|+.|++++|.+.+ .+ .
T Consensus       144 ------------------------~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~  190 (454)
T 1jl5_A          144 ------------------------EK-LP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-E  190 (454)
T ss_dssp             ------------------------SS-CC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-C
T ss_pred             ------------------------CC-Cc-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-c
Confidence                                    22 33 3666777888888888776 3553    23578888888887776 33 4


Q ss_pred             CCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCC
Q 007762          245 IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVN  324 (590)
Q Consensus       245 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  324 (590)
                      +..+++|+.|++++|.++ .+|..    .++|++|++++|.++ .+|. ++.+++|++|++++|.+. .+|.    .+++
T Consensus       191 ~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~  258 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPS  258 (454)
T ss_dssp             CTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTT
T ss_pred             ccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC-cccc----cccc
Confidence            777888888888888877 34432    358888888888887 5664 778888888888888887 4553    2467


Q ss_pred             CcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762          325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK  404 (590)
Q Consensus       325 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  404 (590)
                      |+.|++++|.+.+ ++..   .++|++|++++|.+.+. +.   ..++|++|++++|.+++. +.   ..++|+.|++++
T Consensus       259 L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~  326 (454)
T 1jl5_A          259 LEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSN  326 (454)
T ss_dssp             CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCS
T ss_pred             cCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCC
Confidence            8888888888776 3332   36788888888877642 21   125788888888877642 11   124788888888


Q ss_pred             CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCC--CCCccccccCCCCcEEEcCCCcCCCC
Q 007762          405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHG--QLKRGTFFNYHSLVTLDLSYNRLNGS  482 (590)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~  482 (590)
                      |++.+ +|..   +++|++|++++|.+++ +|.  .+++|++|++++|.+++  .+|..       +..|  +.|.+.+.
T Consensus       327 N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~--~l~~L~~L~L~~N~l~~l~~ip~~-------l~~L--~~n~~~~~  390 (454)
T 1jl5_A          327 NKLIE-LPAL---PPRLERLIASFNHLAE-VPE--LPQNLKQLHVEYNPLREFPDIPES-------VEDL--RMNSHLAE  390 (454)
T ss_dssp             SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSSCCCCCTT-------CCEE--ECCC----
T ss_pred             Ccccc-cccc---CCcCCEEECCCCcccc-ccc--hhhhccEEECCCCCCCcCCCChHH-------HHhh--hhcccccc
Confidence            88775 4443   4678888888888774 343  36778888888887765  44433       2222  33555555


Q ss_pred             ccccccccCCCCEEECcCCcccC--CCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762          483 ISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT  538 (590)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  538 (590)
                      +|..   +++|++|++++|++++  .+|.      +++.|.+.+|.+.+.+|......
T Consensus       391 i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          391 VPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             ----------------------------------------------------------
T ss_pred             cccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence            5553   4789999999999986  4553      46778899999988777665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5e-34  Score=295.91  Aligned_cols=345  Identities=24%  Similarity=0.313  Sum_probs=190.7

Q ss_pred             CCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccE
Q 007762           73 LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKV  152 (590)
Q Consensus        73 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~  152 (590)
                      +++++.|+++++.+. .+| .+..+++|++|++++|.++ .++.  +.++++|++|++++|.+.+               
T Consensus        45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~---------------  104 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIAD---------------  104 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC---------------
T ss_pred             hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCcccc---------------
Confidence            445666666666655 233 2555666666666666655 3332  5555556666655554431               


Q ss_pred             EEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEc
Q 007762          153 FWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL  232 (590)
Q Consensus       153 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l  232 (590)
                                                             .+. +..+++|++|++++|.+.+ ++.  +..+++|+.|++
T Consensus       105 ---------------------------------------~~~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l  141 (466)
T 1o6v_A          105 ---------------------------------------ITP-LANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLEL  141 (466)
T ss_dssp             ---------------------------------------CGG-GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEEE
T ss_pred             ---------------------------------------Chh-hcCCCCCCEEECCCCCCCC-ChH--HcCCCCCCEEEC
Confidence                                                   111 4456677777777777663 332  356666666666


Q ss_pred             cCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCccccc
Q 007762          233 VNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG  312 (590)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  312 (590)
                      ++|.+.+..  .+..+++|+.|++++ .+. ..+. +. .+++|+.|++++|.+++ + ..+..+++|++|++++|.+. 
T Consensus       142 ~~n~l~~~~--~~~~l~~L~~L~l~~-~~~-~~~~-~~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~-  212 (466)
T 1o6v_A          142 SSNTISDIS--ALSGLTSLQQLSFGN-QVT-DLKP-LA-NLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQIS-  212 (466)
T ss_dssp             EEEEECCCG--GGTTCTTCSEEEEEE-SCC-CCGG-GT-TCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-
T ss_pred             CCCccCCCh--hhccCCcccEeecCC-ccc-Cchh-hc-cCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccc-
Confidence            666655522  245566666666642 232 1111 22 24555555555555542 1 12444555555555555554 


Q ss_pred             ccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccC
Q 007762          313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLG  392 (590)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  392 (590)
                                              +..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +.
T Consensus       213 ------------------------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          213 ------------------------DITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             ------------------------CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             ------------------------cccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence                                    3222  33344444444444444321  234445555555555555543322  45


Q ss_pred             CCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEE
Q 007762          393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTL  472 (590)
Q Consensus       393 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  472 (590)
                      .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+.+..+   +..+++|+.|
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L  336 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL  336 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEE
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCEe
Confidence            55555555555555553222  5555555566665555554332 2335556666666666543332   5567777888


Q ss_pred             EcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          473 DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       473 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      ++++|.+++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            8888777754  356777788888888888776655  6777788888888887775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.5e-34  Score=297.27  Aligned_cols=357  Identities=20%  Similarity=0.215  Sum_probs=185.8

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT  123 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~  123 (590)
                      .+++|++|++++|.+++    ++  .+..+++|++|++++|.+++ ++  +..+++|++|++++|.++ .++   +.+++
T Consensus        40 ~l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~  106 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT-NLD---VTPLT  106 (457)
T ss_dssp             HHTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC---CTTCT
T ss_pred             HcCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc-eee---cCCCC
Confidence            55666666666666654    32  46666666666666666664 22  556666666666666665 232   55666


Q ss_pred             CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762          124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE  203 (590)
Q Consensus       124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  203 (590)
                      +|++|++++|.+.+ ++   +..+++|+.|++++|.+...                               .+..+++|+
T Consensus       107 ~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~l~~L~  151 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-------------------------------DVSHNTQLT  151 (457)
T ss_dssp             TCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-------------------------------CCTTCTTCC
T ss_pred             cCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-------------------------------ccccCCcCC
Confidence            66666666666542 11   44445555554444432210                               023344555


Q ss_pred             EEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccC
Q 007762          204 YVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM  283 (590)
Q Consensus       204 ~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~  283 (590)
                      +|++++|...+.++   +..+++|+.|++++|.+.+. +  +..+++|+.|++++|.+++ ++  +.. +++|++|++++
T Consensus       152 ~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~-~~--l~~-l~~L~~L~Ls~  221 (457)
T 3bz5_A          152 ELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK-LD--LNQ-NIQLTFLDCSS  221 (457)
T ss_dssp             EEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC-CC--CTT-CTTCSEEECCS
T ss_pred             EEECCCCCcccccc---cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCe-ec--ccc-CCCCCEEECcC
Confidence            55555553333332   24455555555555555442 1  4444555555555555442 11  111 44444444444


Q ss_pred             ceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccC
Q 007762          284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI  363 (590)
Q Consensus       284 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~  363 (590)
                      |.+++ +|  ++.++                         +|+.|++++|.+.+..   +..+++|+.|+++++      
T Consensus       222 N~l~~-ip--~~~l~-------------------------~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------  264 (457)
T 3bz5_A          222 NKLTE-ID--VTPLT-------------------------QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------  264 (457)
T ss_dssp             SCCSC-CC--CTTCT-------------------------TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------
T ss_pred             Ccccc-cC--ccccC-------------------------CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------
Confidence            44443 22  34444                         4444444444444322   223344444443332      


Q ss_pred             CccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCc
Q 007762          364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS  443 (590)
Q Consensus       364 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  443 (590)
                              +|+.+++++|...+.+|  +..+++|+.|++++|...+.+|.   ..++|+.|++++|            ++
T Consensus       265 --------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~  319 (457)
T 3bz5_A          265 --------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PK  319 (457)
T ss_dssp             --------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TT
T ss_pred             --------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc------------cc
Confidence                    23334444444433332  33445555555555554433332   2334444444443            35


Q ss_pred             ccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECc
Q 007762          444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS  523 (590)
Q Consensus       444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  523 (590)
                      |++|++++|.+++ ++   +..+++|+.|++++|++++        ++.|+.|++++|.+.+.     ..+..|..++++
T Consensus       320 L~~L~L~~N~l~~-l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~  382 (457)
T 3bz5_A          320 LVYLYLNNTELTE-LD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT  382 (457)
T ss_dssp             CCEEECTTCCCSC-CC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred             CCEEECCCCcccc-cc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence            5666666666644 32   6667778888888887774        24556667777777754     234556677888


Q ss_pred             CCccCCCCcccccc
Q 007762          524 NNNLHGPIPPCFDN  537 (590)
Q Consensus       524 ~n~l~~~~p~~~~~  537 (590)
                      +|+++|.+|..+..
T Consensus       383 ~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          383 NNSLTIAVSPDLLD  396 (457)
T ss_dssp             TTBEEEECCTTCBC
T ss_pred             cCcEEEEcChhHhc
Confidence            88888877766543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-33  Score=291.52  Aligned_cols=347  Identities=27%  Similarity=0.358  Sum_probs=230.5

Q ss_pred             CCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcccc
Q 007762           16 PHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMA   95 (590)
Q Consensus        16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~   95 (590)
                      ..+++|+.|+++++.+   ..++. +. .+++|++|++++|.+.+    +++  +..+++|++|++++|.+.+..+  +.
T Consensus        43 ~~l~~l~~L~l~~~~i---~~l~~-~~-~l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~--~~  109 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGI---KSIDG-VE-YLNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP--LA  109 (466)
T ss_dssp             HHHHTCCEEECCSSCC---CCCTT-GG-GCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred             hHhccccEEecCCCCC---ccCcc-hh-hhcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh--hc
Confidence            4466777777777743   23442 44 67777777777777754    442  7777777777777777774333  77


Q ss_pred             CCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCc
Q 007762           96 NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNF  175 (590)
Q Consensus        96 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~  175 (590)
                      ++++|++|++++|.++ .++.  +.++++|++|++++|.+.+   ...+..+++|+.++++++ +               
T Consensus       110 ~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~---~~~~~~l~~L~~L~l~~~-~---------------  167 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQ-V---------------  167 (466)
T ss_dssp             TCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC---CGGGTTCTTCSEEEEEES-C---------------
T ss_pred             CCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCC---ChhhccCCcccEeecCCc-c---------------
Confidence            7777777777777776 4443  6777777777777777653   124666677777665421 1               


Q ss_pred             ccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEE
Q 007762          176 QLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD  255 (590)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  255 (590)
                                   .. . ..+..+++|++|++++|.+.+ ++.  +..+++|+.|++++|.+.+..+  +..+++|+.|+
T Consensus       168 -------------~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  227 (466)
T 1o6v_A          168 -------------TD-L-KPLANLTTLERLDISSNKVSD-ISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELS  227 (466)
T ss_dssp             -------------CC-C-GGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             -------------cC-c-hhhccCCCCCEEECcCCcCCC-Chh--hccCCCCCEEEecCCccccccc--ccccCCCCEEE
Confidence                         01 1 126677788888888887763 332  4678888888888887776544  55677888888


Q ss_pred             ccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcC
Q 007762          256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL  335 (590)
Q Consensus       256 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i  335 (590)
                      +++|.+++ ++ .+. .+++|++|++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|+.|++++|.+
T Consensus       228 l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l  299 (466)
T 1o6v_A          228 LNGNQLKD-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQL  299 (466)
T ss_dssp             CCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCC
T ss_pred             CCCCCccc-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcc
Confidence            88887763 33 233 36778888888887774433  677777888888877776 3443  33577777777777777


Q ss_pred             CCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCccc
Q 007762          336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF  415 (590)
Q Consensus       336 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  415 (590)
                      .+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++.+..|  +
T Consensus       300 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  371 (466)
T 1o6v_A          300 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L  371 (466)
T ss_dssp             SCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred             cCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h
Confidence            65433  5567777777777777665443  55677777777777776644  356667777777777777665544  6


Q ss_pred             CCCCCCcEEEcccCcCCC
Q 007762          416 CQLDWLQILDISDNNISG  433 (590)
Q Consensus       416 ~~l~~L~~L~l~~n~l~~  433 (590)
                      ..+++|+.|++++|.+++
T Consensus       372 ~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          372 ANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCTTCCEEECCCEEEEC
T ss_pred             hcCCCCCEEeccCCcccC
Confidence            666777777777776664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.7e-34  Score=291.20  Aligned_cols=358  Identities=18%  Similarity=0.191  Sum_probs=263.5

Q ss_pred             CCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcc
Q 007762           14 GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWC   93 (590)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~   93 (590)
                      .++++++|++|+++++  .+.+ +| .+. .+++|++|++++|.+++    +   .+..+++|++|++++|.+++. +  
T Consensus        37 ~~~~l~~L~~L~Ls~n--~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS--SITD-MT-GIE-KLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             EHHHHTTCCEEECCSS--CCCC-CT-TGG-GCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCC-C--
T ss_pred             ChhHcCCCCEEEccCC--Cccc-Ch-hhc-ccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCcee-e--
Confidence            5888999999999999  4454 45 566 89999999999999976    4   288999999999999999953 3  


Q ss_pred             ccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCC
Q 007762           94 MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAP  173 (590)
Q Consensus        94 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  173 (590)
                      +..+++|++|++++|.++ .++   +..+++|++|++++|.+.+ +   .+..+++|+.+++++|...+.          
T Consensus       102 ~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~----------  163 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITK----------  163 (457)
T ss_dssp             CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCC----------
T ss_pred             cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccc----------
Confidence            889999999999999998 453   7899999999999999885 2   377889999999988742211          


Q ss_pred             CcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccE
Q 007762          174 NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRL  253 (590)
Q Consensus       174 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  253 (590)
                                        +  .+..+++|+.|++++|.+.+ +|   +..+++|+.|++++|.+.+.   .+..+++|+.
T Consensus       164 ------------------~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~  216 (457)
T 3bz5_A          164 ------------------L--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF  216 (457)
T ss_dssp             ------------------C--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred             ------------------c--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence                              1  24567899999999999984 55   47899999999999999985   4788999999


Q ss_pred             EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCC
Q 007762          254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN  333 (590)
Q Consensus       254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  333 (590)
                      |++++|.+++ +|  +. .+++|+.|++++|.+++..   ++.+++|+.|++++|               +|+.+++++|
T Consensus       217 L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n  274 (457)
T 3bz5_A          217 LDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHN  274 (457)
T ss_dssp             EECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTC
T ss_pred             EECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCC
Confidence            9999999985 66  43 3889999999999998643   456778888887654               3455667777


Q ss_pred             cCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCc
Q 007762          334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV  413 (590)
Q Consensus       334 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  413 (590)
                      ...+..|  +..+++|+.|++++|...+.+|.   ....|+.+++++|             ++|+.|++++|++.+.   
T Consensus       275 ~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---  333 (457)
T 3bz5_A          275 TQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---  333 (457)
T ss_dssp             TTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---
T ss_pred             ccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---
Confidence            6655444  34567777777777765554442   2334444433333             5666677777666652   


Q ss_pred             ccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCC
Q 007762          414 EFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQL  493 (590)
Q Consensus       414 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  493 (590)
                      .+..+++|+.|++++|++++                                ++.|..|++++|.+.+.     ..+..|
T Consensus       334 ~l~~l~~L~~L~l~~N~l~~--------------------------------l~~L~~L~l~~n~l~g~-----~~~~~l  376 (457)
T 3bz5_A          334 DVSHNTKLKSLSCVNAHIQD--------------------------------FSSVGKIPALNNNFEAE-----GQTITM  376 (457)
T ss_dssp             CCTTCTTCSEEECCSSCCCB--------------------------------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred             ccccCCcCcEEECCCCCCCC--------------------------------ccccccccccCCcEEec-----ceeeec
Confidence            25566666666666666653                                12344455556655543     234456


Q ss_pred             CEEECcCCcccCCCcccc
Q 007762          494 SHLILGHNNLEGEVPVQL  511 (590)
Q Consensus       494 ~~L~L~~n~l~~~~~~~~  511 (590)
                      +.+++++|+++|.+|..+
T Consensus       377 ~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          377 PKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CCBCCBTTBEEEECCTTC
T ss_pred             CccccccCcEEEEcChhH
Confidence            666777777776666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=292.45  Aligned_cols=321  Identities=19%  Similarity=0.139  Sum_probs=269.8

Q ss_pred             cEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEcc
Q 007762          203 EYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNIS  282 (590)
Q Consensus       203 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  282 (590)
                      +.++.++..+. .+|..+   .++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence            56788887776 677643   468999999999999887888999999999999999998555666655 8899999999


Q ss_pred             CceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccccc
Q 007762          283 MNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE  362 (590)
Q Consensus       283 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~  362 (590)
                      +|.++...+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            99998666667889999999999999998 44444455689999999999999888888888999999999999998866


Q ss_pred             CCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CC
Q 007762          363 IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HP  441 (590)
Q Consensus       363 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~  441 (590)
                      .+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+++..+..+ .+
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence            66778899999999999999988877889999999999999988777777666666799999999999885543333 47


Q ss_pred             CcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEE
Q 007762          442 LSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD  521 (590)
Q Consensus       442 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  521 (590)
                      ++|+.|++++|.+. .++...+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|+
T Consensus       248 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  326 (477)
T 2id5_A          248 VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI  326 (477)
T ss_dssp             TTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred             cccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence            88999999999985 55555588899999999999999988888899999999999999999977777788899999999


Q ss_pred             CcCCccCCC
Q 007762          522 LSNNNLHGP  530 (590)
Q Consensus       522 l~~n~l~~~  530 (590)
                      +++|++...
T Consensus       327 l~~N~l~c~  335 (477)
T 2id5_A          327 LDSNPLACD  335 (477)
T ss_dssp             CCSSCEECS
T ss_pred             ccCCCccCc
Confidence            999998854

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=291.49  Aligned_cols=341  Identities=20%  Similarity=0.185  Sum_probs=282.2

Q ss_pred             CChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhh
Q 007762          192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD  271 (590)
Q Consensus       192 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  271 (590)
                      +|..+  .++++.|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+++|+.|++++|.++ .++...+.
T Consensus        26 ip~~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~  101 (477)
T 2id5_A           26 VPEGI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFT  101 (477)
T ss_dssp             CCSCC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSST
T ss_pred             CCCCC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCccccc
Confidence            44433  358999999999998544444 589999999999999999988889999999999999999998 66665555


Q ss_pred             cCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCc
Q 007762          272 VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKW  351 (590)
Q Consensus       272 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  351 (590)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus       102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred             CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence            5899999999999999888889999999999999999998 454444557999999999999999877777889999999


Q ss_pred             eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcC
Q 007762          352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI  431 (590)
Q Consensus       352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  431 (590)
                      |++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred             EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence            99999999988788899999999999999988777777666677999999999999965556899999999999999999


Q ss_pred             CCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc
Q 007762          432 SGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ  510 (590)
Q Consensus       432 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  510 (590)
                      ++..+..+. +++|+.|++++|.+.+ ++...|..+++|+.|++++|.+++..+..|..+++|++|++++|++...-+..
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          261 STIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             CEECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred             CccChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence            977776554 7899999999999965 44445999999999999999999888888999999999999999998543211


Q ss_pred             ccCCCCCCEEECcCCccCCCCccccccCC
Q 007762          511 LCKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       511 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                      + -......+++.++...-.-|..+++..
T Consensus       340 ~-~~~~~~~~~~~~~~~~C~~p~~~~g~~  367 (477)
T 2id5_A          340 W-VFRRRWRLNFNRQQPTCATPEFVQGKE  367 (477)
T ss_dssp             H-HHTTTTSSCCTTCCCBEEESGGGTTCB
T ss_pred             h-HHhhhhccccCccCceeCCchHHcCCc
Confidence            1 112233344555554444455555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.3e-31  Score=267.13  Aligned_cols=307  Identities=21%  Similarity=0.300  Sum_probs=248.7

Q ss_pred             ccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCC
Q 007762          196 LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPG  275 (590)
Q Consensus       196 l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  275 (590)
                      +..+++|++|+++++.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++ .+. .+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTT
T ss_pred             chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCCc
Confidence            346778999999998886 4554  4789999999999998887544  778899999999999887 444 343 3889


Q ss_pred             CcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceecc
Q 007762          276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLE  355 (590)
Q Consensus       276 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  355 (590)
                      |++|++++|.+++ ++. +..+++|++|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus       112 L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          112 LRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             CSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             CCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            9999999999884 343 88899999999999966545544  3468899999999998876543  7788999999999


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCC
Q 007762          356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL  435 (590)
Q Consensus       356 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  435 (590)
                      +|.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. 
T Consensus       186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred             CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence            998874433  7788999999999999885543  7888999999999999885433  88899999999999998853 


Q ss_pred             CCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC
Q 007762          436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN  515 (590)
Q Consensus       436 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  515 (590)
                      +....+++|+.|++++|.+.+ ++  .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|  +..++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence            445567899999999998854 43  37889999999999999998888899999999999999999996655  88899


Q ss_pred             CCCEEECcCCccC
Q 007762          516 QLQLLDLSNNNLH  528 (590)
Q Consensus       516 ~L~~L~l~~n~l~  528 (590)
                      +|+.|++++|+++
T Consensus       334 ~L~~L~l~~N~i~  346 (347)
T 4fmz_A          334 KMDSADFANQVIK  346 (347)
T ss_dssp             TCSEESSSCC---
T ss_pred             ccceeehhhhccc
Confidence            9999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-31  Score=268.95  Aligned_cols=310  Identities=22%  Similarity=0.197  Sum_probs=251.9

Q ss_pred             CCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCc
Q 007762          198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF  277 (590)
Q Consensus       198 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  277 (590)
                      .+++++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCC
Confidence            3578899999998876 678777788999999999999988877778888999999999999988544444444 88999


Q ss_pred             EEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCc
Q 007762          278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN  357 (590)
Q Consensus       278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  357 (590)
                      +|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+.   .+..+++|+.|++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence            9999999988544445688999999999999988 55555455688999999999988764   2456788999999988


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCC
Q 007762          358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS  437 (590)
Q Consensus       358 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  437 (590)
                      .+.+     +...++|+.|++++|.+... +.  ...++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+.
T Consensus       197 ~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          197 LLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence            8763     23456899999999988754 32  2347899999999998753  5788899999999999999877666


Q ss_pred             CC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCC
Q 007762          438 CF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ  516 (590)
Q Consensus       438 ~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  516 (590)
                      .+ .+++|++|++++|.++ .++.. +..+++|+.|++++|.++ .+|..+..+++|++|++++|+++.. +  +..+++
T Consensus       267 ~~~~l~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~  340 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT  340 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCC-EEECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred             HccccccCCEEECCCCcCc-ccCcc-cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhcc
Confidence            55 4788999999999984 45554 577899999999999998 5677788899999999999999844 3  778899


Q ss_pred             CCEEECcCCccCC
Q 007762          517 LQLLDLSNNNLHG  529 (590)
Q Consensus       517 L~~L~l~~n~l~~  529 (590)
                      |+.|++++|++..
T Consensus       341 L~~L~l~~N~~~~  353 (390)
T 3o6n_A          341 LKNLTLSHNDWDC  353 (390)
T ss_dssp             CSEEECCSSCEEH
T ss_pred             CCEEEcCCCCccc
Confidence            9999999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.2e-30  Score=276.74  Aligned_cols=310  Identities=22%  Similarity=0.192  Sum_probs=241.9

Q ss_pred             CCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcE
Q 007762          199 QHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFS  278 (590)
Q Consensus       199 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  278 (590)
                      +.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCCE
Confidence            467888888888876 67777778888888888888888887777788888888888888888754444444 3788888


Q ss_pred             EEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcc
Q 007762          279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH  358 (590)
Q Consensus       279 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  358 (590)
                      |++++|.+++..+..|+.+++|++|++++|.+. .++...+..+++|++|++++|.+.+..   +..+++|+.|++++|.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            888888888555555688888888888888887 444444446888888888888887642   4557888888888887


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC
Q 007762          359 FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC  438 (590)
Q Consensus       359 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  438 (590)
                      +.+     +...++|+.|++++|.+....+. +  .++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence            763     33456788888888888744322 2  3678889999888875  467788888999999999888776665


Q ss_pred             C-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCC
Q 007762          439 F-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL  517 (590)
Q Consensus       439 ~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  517 (590)
                      + .+++|+.|++++|.++ .++.. +..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++. +  +..+++|
T Consensus       274 ~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L  347 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL  347 (597)
T ss_dssp             GTTCSSCCEEECTTSCCC-EEECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred             hcCccCCCEEECCCCCCC-CCCcc-cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence            5 3788899999998885 45554 567899999999999998 6777888999999999999999854 3  7788999


Q ss_pred             CEEECcCCccCCC
Q 007762          518 QLLDLSNNNLHGP  530 (590)
Q Consensus       518 ~~L~l~~n~l~~~  530 (590)
                      +.|++++|++.+.
T Consensus       348 ~~L~l~~N~~~~~  360 (597)
T 3oja_B          348 KNLTLSHNDWDCN  360 (597)
T ss_dssp             SEEECCSSCEEHH
T ss_pred             CEEEeeCCCCCCh
Confidence            9999999999854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.3e-30  Score=262.32  Aligned_cols=309  Identities=20%  Similarity=0.196  Sum_probs=257.4

Q ss_pred             ccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEE
Q 007762          176 QLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD  255 (590)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  255 (590)
                      +++.+++ ..+.+....+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus        46 ~l~~l~l-~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           46 NQKIVTF-KNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCSEEEE-ESCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEe-cCCchhhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            3344444 3333333344557889999999999999974 4443458999999999999999998888899999999999


Q ss_pred             ccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcC
Q 007762          256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL  335 (590)
Q Consensus       256 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i  335 (590)
                      +++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++.   ..+++|+.+++++|.+
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~---~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG---GGCTTCSEEECCSSCC
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc---ccccccceeecccccc
Confidence            9999998 777776555899999999999999877888999999999999999998 4442   2478999999999988


Q ss_pred             CCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCccc
Q 007762          336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF  415 (590)
Q Consensus       336 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  415 (590)
                      .+.     ...++|++|++++|.+... +.  ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..|
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            753     2356899999999998754 33  2357999999999999864  578899999999999999998889999


Q ss_pred             CCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCE
Q 007762          416 CQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSH  495 (590)
Q Consensus       416 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  495 (590)
                      ..+++|++|++++|.+++.......+++|+.|++++|.+. .++.. +..+++|+.|++++|.+++. +  +..+++|++
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~  343 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN  343 (390)
T ss_dssp             TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGG-HHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred             cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcc-ccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence            9999999999999999876555556899999999999995 66666 78899999999999999854 3  678899999


Q ss_pred             EECcCCcccCC
Q 007762          496 LILGHNNLEGE  506 (590)
Q Consensus       496 L~L~~n~l~~~  506 (590)
                      |++++|++...
T Consensus       344 L~l~~N~~~~~  354 (390)
T 3o6n_A          344 LTLSHNDWDCN  354 (390)
T ss_dssp             EECCSSCEEHH
T ss_pred             EEcCCCCccch
Confidence            99999999854

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=9.4e-30  Score=253.68  Aligned_cols=303  Identities=21%  Similarity=0.292  Sum_probs=253.7

Q ss_pred             hcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCc
Q 007762          222 ENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ  301 (590)
Q Consensus       222 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~  301 (590)
                      ..+++|+.|+++++.+....  .+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++ .+..+++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~  113 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT-DISP-LS-NLVKLTNLYIGTNKITD-IS-ALQNLTNLR  113 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccc-cchh-hh-cCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence            57899999999999988643  3788999999999999998 4555 43 48999999999999884 43 689999999


Q ss_pred             EEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCC
Q 007762          302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN  381 (590)
Q Consensus       302 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  381 (590)
                      +|++++|.+. .++.  +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|
T Consensus       114 ~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          114 ELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             EEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             EEECcCCccc-Cchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            9999999998 5655  4469999999999996655443 48889999999999999875433  789999999999999


Q ss_pred             cccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcc
Q 007762          382 SLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRG  461 (590)
Q Consensus       382 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  461 (590)
                      .+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+ ...+++|++|++++|.+.+ ++  
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--  259 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-IN--  259 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG--
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-Ch--
Confidence            9985433  8889999999999999985443  8889999999999999986554 5568899999999999854 42  


Q ss_pred             ccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCcc
Q 007762          462 TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLH  541 (590)
Q Consensus       462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~  541 (590)
                      .+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|  +..++.+
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence            388899999999999999964  458899999999999999998888999999999999999999997666  5555555


Q ss_pred             ccccCCCC
Q 007762          542 ESYSNSSS  549 (590)
Q Consensus       542 ~~~~~~~~  549 (590)
                      ...+...+
T Consensus       336 ~~L~l~~N  343 (347)
T 4fmz_A          336 DSADFANQ  343 (347)
T ss_dssp             SEESSSCC
T ss_pred             ceeehhhh
Confidence            54444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.4e-30  Score=278.16  Aligned_cols=330  Identities=20%  Similarity=0.168  Sum_probs=269.1

Q ss_pred             cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcE
Q 007762          223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL  302 (590)
Q Consensus       223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  302 (590)
                      .+++++.++++++.+....+..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.+++..|..|+.+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            5678999999999988866666788999999999999998544445544 899999999999999888888999999999


Q ss_pred             EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCc
Q 007762          303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS  382 (590)
Q Consensus       303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  382 (590)
                      |++++|.+. .+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.   .+..+++|+.|++++|.
T Consensus       128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence            999999998 88887777799999999999999998888899999999999999998854   25668899999999998


Q ss_pred             ccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccc
Q 007762          383 LSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGT  462 (590)
Q Consensus       383 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  462 (590)
                      +++     +...++|+.|++++|.+... +..+  .++|+.|++++|.+++. +....+++|+.|++++|.+.+..+.. 
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~-  273 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP-  273 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG-
T ss_pred             ccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHH-
Confidence            874     34557899999999998743 3222  36899999999999863 44556899999999999997655555 


Q ss_pred             cccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccc
Q 007762          463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (590)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~  542 (590)
                      +..+++|+.|+|++|.+++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..+..   +.
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---L~  348 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LK  348 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC---CS
T ss_pred             hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCC---CC
Confidence            8999999999999999995 6777788999999999999999 78888999999999999999999765444444   33


Q ss_pred             cccCCCCCCCccc-----eeccccCCCCCCCCCcc
Q 007762          543 SYSNSSSPNKQFE-----IFFFIQGPQGHPRLATL  572 (590)
Q Consensus       543 ~~~~~~~~~~~~~-----~~~~~~~~~~np~~~~~  572 (590)
                      ..+...++..+-.     ..+....+.+++..|+.
T Consensus       349 ~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             EEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred             EEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence            4444455443211     11223445677777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=9.1e-31  Score=256.14  Aligned_cols=233  Identities=32%  Similarity=0.477  Sum_probs=140.8

Q ss_pred             CCcEEEccCceecc--cCCcccCCCCCCcEEEccC-cccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCc
Q 007762          275 GLFSLNISMNALDG--SIPSSFGNMKFLQLLDVTN-NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKW  351 (590)
Q Consensus       275 ~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  351 (590)
                      +++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+. .+++|++|++++|.+.+              
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEE--------------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCC--------------
Confidence            55566666666555  5555555555555555553 555444444433 24455555555554444              


Q ss_pred             eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCC-CCcEEEcccCc
Q 007762          352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD-WLQILDISDNN  430 (590)
Q Consensus       352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~  430 (590)
                                ..|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.
T Consensus       116 ----------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          116 ----------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ----------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ----------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                      4444444455555555555555444444455555555555555555444455555554 55555555555


Q ss_pred             CCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc
Q 007762          431 ISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ  510 (590)
Q Consensus       431 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  510 (590)
                      +++..|..+....|+.|++++|.+.+.++.. +..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..
T Consensus       186 l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             EEEECCGGGGGCCCSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred             eeccCChHHhCCcccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence            5544444444333555555555554444433 77778888888888888765555 677788888888888888888888


Q ss_pred             ccCCCCCCEEECcCCccCCCCccc
Q 007762          511 LCKLNQLQLLDLSNNNLHGPIPPC  534 (590)
Q Consensus       511 ~~~l~~L~~L~l~~n~l~~~~p~~  534 (590)
                      +..+++|+.|++++|++++.+|..
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS
T ss_pred             HhcCcCCCEEECcCCcccccCCCC
Confidence            888888888888888888877765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.3e-29  Score=248.94  Aligned_cols=266  Identities=20%  Similarity=0.241  Sum_probs=137.6

Q ss_pred             cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762          250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA  329 (590)
Q Consensus       250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  329 (590)
                      +|+.|++++|.+++..+..+.. +++|++|++++|.+++..|..++.+++|++|++++|.+. .+|..++   ++|++|+
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~  129 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELR  129 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEE
T ss_pred             CCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEE
Confidence            4444444444444222222222 444555555555444444444555555555555555544 4443331   4455555


Q ss_pred             ccCCcCCCccCccccCccccCceeccCccccc--cCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcC
Q 007762          330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL  407 (590)
Q Consensus       330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~  407 (590)
                      +++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i  205 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI  205 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence            55555544444444455555555555555431  333444444 55555555555543 222222  4555555665555


Q ss_pred             cCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccc
Q 007762          408 EGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW  486 (590)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  486 (590)
                      .+..+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+. .+|.. +..+++|+.|++++|.+++..+..
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhH
Confidence            55444555555566666666665554444322 2445555555555553 45554 666677777777777777655555


Q ss_pred             ccc------cCCCCEEECcCCccc--CCCcccccCCCCCCEEECcCCc
Q 007762          487 VDG------LSQLSHLILGHNNLE--GEVPVQLCKLNQLQLLDLSNNN  526 (590)
Q Consensus       487 ~~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~  526 (590)
                      |..      ...|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            543      355677777777766  4556667777777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.2e-30  Score=253.36  Aligned_cols=252  Identities=31%  Similarity=0.442  Sum_probs=205.2

Q ss_pred             CcccEEEccCCcCCC--CCchhhhhcCCCCcEEEccC-ceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCC
Q 007762          249 KRLRLLDISNNNFRG--HIPVEIGDVLPGLFSLNISM-NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNL  325 (590)
Q Consensus       249 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  325 (590)
                      .+++.|+++++.+++  .+|..+.. +++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+. .+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCC
Confidence            467888888888877  67777765 78888888884 777777888888888888888888888767776654 48888


Q ss_pred             cEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCC-CCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762          326 EYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK  404 (590)
Q Consensus       326 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  404 (590)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ .|+.|++++|.+++.+|..+..++ |+.|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            8888888888877777888888888888888888877888888887 888888888888888888888776 88888888


Q ss_pred             CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762          405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS  484 (590)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  484 (590)
                      |.+.+..+..|..+++|++|++++|.+++.+                       +.  +..+++|++|++++|.+++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------~~--~~~l~~L~~L~Ls~N~l~~~~p  261 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-----------------------GK--VGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBG-----------------------GG--CCCCTTCCEEECCSSCCEECCC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeec-----------------------Cc--ccccCCCCEEECcCCcccCcCC
Confidence            8888778888888888888888888776322                       22  4556788999999999988888


Q ss_pred             ccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCc-cCC
Q 007762          485 DWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNN-LHG  529 (590)
Q Consensus       485 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~  529 (590)
                      .++..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus       262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            88988999999999999998888876 788899999999998 444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.2e-29  Score=245.26  Aligned_cols=290  Identities=21%  Similarity=0.207  Sum_probs=147.7

Q ss_pred             cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762          201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN  280 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  280 (590)
                      +++.++++++.+. .+|..+   .++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence            4566666666554 444322   245555555555555544444555555555555555555333333333 45555555


Q ss_pred             ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc
Q 007762          281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV  360 (590)
Q Consensus       281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  360 (590)
                      +++|.++ .+|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+..                      .
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~  160 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS----------------------S  160 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG----------------------G
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCc----------------------c
Confidence            5555554 3333322  45555555555554 3333333345555555555554432                      0


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-
Q 007762          361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-  439 (590)
Q Consensus       361 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-  439 (590)
                      +..+..+..+++|++|++++|.++. ++..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ 
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            1223334444444444444444442 222221  455555555555554444455555555555555555544333222 


Q ss_pred             CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccc------cCCCCEEECcCCcccC--CCcccc
Q 007762          440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG------LSQLSHLILGHNNLEG--EVPVQL  511 (590)
Q Consensus       440 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~--~~~~~~  511 (590)
                      .+++|++|++++|.+. .+|.. +..+++|+.|++++|.+++..+..|..      ...++.|++++|++..  ..|..|
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f  315 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  315 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence            2344555555555442 44444 566677777777777777655555532      3567777777777653  445667


Q ss_pred             cCCCCCCEEECcCCc
Q 007762          512 CKLNQLQLLDLSNNN  526 (590)
Q Consensus       512 ~~l~~L~~L~l~~n~  526 (590)
                      ..+++++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            777778888877774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.2e-33  Score=293.60  Aligned_cols=337  Identities=18%  Similarity=0.126  Sum_probs=206.2

Q ss_pred             CChhccCCCcccEEEcCCCcCccccchHHhhcCC----CCcEEEccCCCCCC----CCcCCCCCCCcccEEEccCCcCCC
Q 007762          192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNT----NLESLFLVNDSLAG----PFRLPIHSHKRLRLLDISNNNFRG  263 (590)
Q Consensus       192 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~  263 (590)
                      ++..+..+++|++|++++|.+.+..+..++..++    +|++|++++|.+..    .++..+..+++|++|++++|.+++
T Consensus        48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            3455666778888888888776655655556666    68888888887774    235566778888888888888764


Q ss_pred             CCchhhhhc----CCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCcccccccchhhh----cCCCCCcEEEcc
Q 007762          264 HIPVEIGDV----LPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQLTGEIPEHLA----VGCVNLEYLALS  331 (590)
Q Consensus       264 ~~~~~~~~~----~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~  331 (590)
                      ..+..+...    .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.    ...++|++|+++
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  207 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE  207 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence            444443322    34688888888877752    355566678888888888887643333222    235578888888


Q ss_pred             CCcCCCc----cCccccCccccCceeccCccccccC-----CccccCCCCCCEEEccCCccccc----CccccCCCCCcc
Q 007762          332 NNSLEGH----MFSRNFNLTNLKWLQLEGNHFVGEI-----PQSLSKCFVLEGLFLNNNSLSGM----IPRWLGNLTRLQ  398 (590)
Q Consensus       332 ~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~  398 (590)
                      +|.+.+.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+..+++|+
T Consensus       208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  287 (461)
T 1z7x_W          208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK  287 (461)
T ss_dssp             TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred             CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence            8877653    3444556777888888877765432     22233567788888888877653    345566677788


Q ss_pred             EEECCCCcCcCCCCcccC-----CCCCCcEEEcccCcCCCCCCCCC-----CCCcccEEECcCccCCCCCCccccc----
Q 007762          399 HIMMPKNHLEGPIPVEFC-----QLDWLQILDISDNNISGSLPSCF-----HPLSIEHVHLSKNMLHGQLKRGTFF----  464 (590)
Q Consensus       399 ~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~----  464 (590)
                      +|++++|.+.+..+..+.     ..++|++|++++|.+++.....+     ..++|++|++++|.+.+..+.. +.    
T Consensus       288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~  366 (461)
T 1z7x_W          288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE-LCQGLG  366 (461)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH-HHHHHT
T ss_pred             eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH-HHHHHc
Confidence            888887776543332222     23577777777777664321111     1356666666666553221111 11    


Q ss_pred             -cCCCCcEEEcCCCcCCC----CccccccccCCCCEEECcCCcccCCCccccc-----CCCCCCEEECcCCccCC
Q 007762          465 -NYHSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGEVPVQLC-----KLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       465 -~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~  529 (590)
                       ..++|+.|++++|.+++    .++..+..+++|++|++++|++++.....+.     ....|+.|++.++.+..
T Consensus       367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence             14566666666666664    4555566666666666666666543211111     12346666666655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.3e-28  Score=243.53  Aligned_cols=288  Identities=19%  Similarity=0.218  Sum_probs=191.6

Q ss_pred             cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762          201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN  280 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  280 (590)
                      +++.++++++.+. .+|..+   .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence            4666677666665 555433   356777777777766655556667777777777777776444444443 66777777


Q ss_pred             ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCC--ccCccccCccccCceeccCcc
Q 007762          281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG--HMFSRNFNLTNLKWLQLEGNH  358 (590)
Q Consensus       281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~  358 (590)
                      +++|.++ .+|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+..  ..+..+..+ +|++|++++|.
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            7777766 4454443  56777777777776 5555555567777777777777642  445555555 77777777777


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC
Q 007762          359 FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC  438 (590)
Q Consensus       359 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  438 (590)
                      +.+ +|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++......
T Consensus       184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l  260 (332)
T 2ft3_A          184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL  260 (332)
T ss_dssp             CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTG
T ss_pred             CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhh
Confidence            763 443332  57777777777777666667777777777777777777666666777777777777777777443334


Q ss_pred             CCCCcccEEECcCccCCCCCCcccccc------CCCCcEEEcCCCcCC--CCccccccccCCCCEEECcCCc
Q 007762          439 FHPLSIEHVHLSKNMLHGQLKRGTFFN------YHSLVTLDLSYNRLN--GSISDWVDGLSQLSHLILGHNN  502 (590)
Q Consensus       439 ~~~~~L~~L~l~~n~~~~~~~~~~~~~------~~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~  502 (590)
                      ..+++|+.|++++|.++ .++...|..      .++|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       261 ~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            44677777777777774 444443433      467899999999987  5778889999999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.6e-33  Score=289.10  Aligned_cols=367  Identities=20%  Similarity=0.194  Sum_probs=208.9

Q ss_pred             CCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccc-cCC
Q 007762           19 KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCM-ANM   97 (590)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~-~~l   97 (590)
                      ++|++|+++++  .+.......++..+++|++|++++|.+++.+....+..+..+++|++|++++|.+.+..+..+ ..+
T Consensus         3 ~~l~~L~Ls~~--~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESC--CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhc--ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            57889999999  555544455444889999999999988642222334667888999999999998875434333 234


Q ss_pred             C----CCcEEEcccccccc----ccCCCCccCCCCCcEEECcCCccccccCcc----ccccCCCccEEEccCCccccccc
Q 007762           98 T----SLRILYVSSNQLTG----SISSSPLVHLTSIEELHLSNNHFQIPISLE----PLFNHSRLKVFWAKNNEINAEIT  165 (590)
Q Consensus        98 ~----~L~~L~ls~n~l~~----~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~----~l~~l~~L~~l~l~~~~~~~~~~  165 (590)
                      +    +|++|++++|.++.    .++. .+..+++|++|++++|.+.......    .....++|+.|++++|.+.....
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            4    69999999998873    3344 5778889999999998876321111    12224567777776665443211


Q ss_pred             CCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhh----cCCCCcEEEccCCCCCCC-
Q 007762          166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE----NNTNLESLFLVNDSLAGP-  240 (590)
Q Consensus       166 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~-  240 (590)
                      .                        .++..+..+++|++|++++|.+.+..+..+..    ..++|+.|++++|.+.+. 
T Consensus       160 ~------------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          160 E------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             H------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             H------------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence            0                        13445566778888888888776544443322    345777777777776653 


Q ss_pred             ---CcCCCCCCCcccEEEccCCcCCCCCch----hhhhcCCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCcc
Q 007762          241 ---FRLPIHSHKRLRLLDISNNNFRGHIPV----EIGDVLPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQ  309 (590)
Q Consensus       241 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~  309 (590)
                         ++..+..+++|+.|++++|.+++....    .+...+++|++|++++|.++..    ++..+..+++|++|++++|.
T Consensus       216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence               233344566777777777766532221    1111245666666666666532    44445556666666666666


Q ss_pred             cccccchhhh----cCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762          310 LTGEIPEHLA----VGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG  385 (590)
Q Consensus       310 ~~~~~~~~~~----~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  385 (590)
                      +.+..+..+.    ...++|++|++++|.+.+.....                    ++..+..+++|++|++++|.+++
T Consensus       296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH--------------------FSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH--------------------HHHHHHHCSSCCEEECCSSBCHH
T ss_pred             CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH--------------------HHHHHhhCCCccEEEccCCcccc
Confidence            5432222211    11245555555555554321100                    12233344455555555554443


Q ss_pred             cCccccC----C-CCCccEEECCCCcCcC----CCCcccCCCCCCcEEEcccCcCC
Q 007762          386 MIPRWLG----N-LTRLQHIMMPKNHLEG----PIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       386 ~~~~~~~----~-l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      ..+..+.    . .++|++|++++|.+.+    .++..+..+++|++|++++|.++
T Consensus       356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            3222111    1 3455555555555543    33444445555555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1e-27  Score=236.95  Aligned_cols=278  Identities=20%  Similarity=0.241  Sum_probs=184.3

Q ss_pred             CcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEE
Q 007762          249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL  328 (590)
Q Consensus       249 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  328 (590)
                      .+++.++++++.++ .+|..+   .++++.|++++|.+++..+..++.+++|++|++++|.+.+..|..+ ..+++|++|
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence            36777777777776 556543   3577777777777776555567777777777777777763334333 357777777


Q ss_pred             EccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc--cCccccCCCCCccEEECCCCc
Q 007762          329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG--MIPRWLGNLTRLQHIMMPKNH  406 (590)
Q Consensus       329 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~  406 (590)
                      ++++|.+.. ++..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.
T Consensus       106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            777777664 333322  577777777777776555667777888888888877753  455667777788888888877


Q ss_pred             CcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccc
Q 007762          407 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD  485 (590)
Q Consensus       407 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  485 (590)
                      +.. +|..+.  ++|++|++++|.+++..+..+. +++|++|++++|.+.+ ++...+..+++|+.|++++|.++ .+|.
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~  257 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPG  257 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcCc-cCCh
Confidence            763 444332  6777777777777766554443 5677777777777743 33333667777777777777777 5666


Q ss_pred             cccccCCCCEEECcCCcccCCCcccccC------CCCCCEEECcCCccCC--CCccccccCC
Q 007762          486 WVDGLSQLSHLILGHNNLEGEVPVQLCK------LNQLQLLDLSNNNLHG--PIPPCFDNTT  539 (590)
Q Consensus       486 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~p~~~~~l~  539 (590)
                      ++..+++|++|++++|++++..+..|..      .+.|+.|++++|++..  ..|..|..+.
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~  319 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  319 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence            6777777777777777777555555533      2567777777777753  3445555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.4e-30  Score=277.38  Aligned_cols=439  Identities=13%  Similarity=0.041  Sum_probs=240.8

Q ss_pred             cchHhhhcCCCCcEEecCCCCCCCCCCCCC-----------cccccCCCCCcEEEeecccccccCCccccC-CCC-CcEE
Q 007762           37 FLQIISESMPSLKYLSLSDSTLGTNSSKIL-----------DRGLCSLVHLQELYIYNNDLRGSLPWCMAN-MTS-LRIL  103 (590)
Q Consensus        37 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-----------~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L  103 (590)
                      .+..+..++++|++|+++++......-.++           ......+++|++|+|++|.+++..+..+.. ++. |++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            344444467778888877653210000011           011125777888888887776555555544 334 8888


Q ss_pred             Eccccc-ccc-ccCCCCccCCCCCcEEECcCCccccccC---ccccccCCCccEEEccCCcccccccCCCCCCCCCcccc
Q 007762          104 YVSSNQ-LTG-SISSSPLVHLTSIEELHLSNNHFQIPIS---LEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLS  178 (590)
Q Consensus       104 ~ls~n~-l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~---~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~  178 (590)
                      ++++|. +.. .++. ...++++|++|++++|.+.+...   ......+++|+.|++++|.+....              
T Consensus       144 ~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~--------------  208 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS--------------  208 (592)
T ss_dssp             EEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC--------------
T ss_pred             ECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC--------------
Confidence            887775 221 1111 23467788888888877653211   123356677777777666543110              


Q ss_pred             eEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCC---CCCcCCCCCCCcccEEE
Q 007762          179 RLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA---GPFRLPIHSHKRLRLLD  255 (590)
Q Consensus       179 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~  255 (590)
                                ...++..+..+++|++|++++|.+. .++.. +..+++|+.|.++.....   ......+..+++|+.++
T Consensus       209 ----------~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~  276 (592)
T 3ogk_B          209 ----------PKDLETIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG  276 (592)
T ss_dssp             ----------HHHHHHHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred             ----------HHHHHHHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence                      0124455667889999999998876 35544 578899999999754322   22334566778888888


Q ss_pred             ccCCcCCCCCchhhhhcCCCCcEEEccCceecccCC-cccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccC--
Q 007762          256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIP-SSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN--  332 (590)
Q Consensus       256 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~--  332 (590)
                      ++++... .++..+.. +++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++  
T Consensus       277 l~~~~~~-~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~  353 (592)
T 3ogk_B          277 LSYMGPN-EMPILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGA  353 (592)
T ss_dssp             ETTCCTT-TGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred             ccccchh-HHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCc
Confidence            8876433 45554433 7788888888888654322 345778888888888 4443333334444577888888873  


Q ss_pred             ---------CcCCCccC-ccccCccccCceeccCccccccCCccccC-CCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          333 ---------NSLEGHMF-SRNFNLTNLKWLQLEGNHFVGEIPQSLSK-CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       333 ---------n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                               +.+++... .....+++|++|+++.+.+++.....+.. +++|+.|+++++.                   
T Consensus       354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-------------------  414 (592)
T 3ogk_B          354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD-------------------  414 (592)
T ss_dssp             CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-------------------
T ss_pred             cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-------------------
Confidence                     33332111 11223455555555444444333222222 4445555443110                   


Q ss_pred             CCCCcCcCC-----CCcccCCCCCCcEEEcccCc--CCCCCCCCC--CCCcccEEECcCccCCCCCCccccccCCCCcEE
Q 007762          402 MPKNHLEGP-----IPVEFCQLDWLQILDISDNN--ISGSLPSCF--HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTL  472 (590)
Q Consensus       402 L~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  472 (590)
                       ..+.+++.     ++..+..+++|++|++++|.  +++.....+  .+++|++|++++|.+++......+.++++|+.|
T Consensus       415 -~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          415 -REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             -CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             -CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence             12233321     11223345555555554432  221111110  134455555555554332222224667788888


Q ss_pred             EcCCCcCCCC-ccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCC
Q 007762          473 DLSYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNN  525 (590)
Q Consensus       473 ~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n  525 (590)
                      ++++|.+++. ++..+..+++|++|++++|++++..... ...+|.+....+..+
T Consensus       494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            8888887643 3444566788888888888877553322 235666665555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=237.85  Aligned_cols=283  Identities=18%  Similarity=0.179  Sum_probs=186.3

Q ss_pred             cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcE
Q 007762          223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL  302 (590)
Q Consensus       223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  302 (590)
                      .|+.....+.+++.++.. |..+  .++|++|++++|.++ .++......+++|++|++++|.+++..+..+..+++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            445555566666666643 2222  246777777777776 344322233677777777777777666666777777777


Q ss_pred             EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccC-ccccCccccCceeccCcc-ccccCCccccCCCCCCEEEccC
Q 007762          303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF-SRNFNLTNLKWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNN  380 (590)
Q Consensus       303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~  380 (590)
                      |++++|.+. .++...+..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|+.|++++
T Consensus       105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            777777776 5665555557777777777777765433 356667777777777763 4444455666667777777777


Q ss_pred             CcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCc
Q 007762          381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKR  460 (590)
Q Consensus       381 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  460 (590)
                      |.+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+.                    
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------------------  243 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------------------  243 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------------------
Confidence            776666666666677777777777766532222334466667777766666543322110                    


Q ss_pred             cccccCCCCcEEEcCCCcCCC----CccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCCccCCCCc
Q 007762          461 GTFFNYHSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       461 ~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                       .....+.++.++++++.+++    .+|.++..+++|++|++++|+++ .+|.. |..+++|+.|++++|++.+..|
T Consensus       244 -~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          244 -TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             02234567888888888775    46778899999999999999999 55655 5899999999999999998665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.4e-27  Score=228.66  Aligned_cols=248  Identities=21%  Similarity=0.229  Sum_probs=156.2

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccc--cchhhhcCCCCCcEEE
Q 007762          252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE--IPEHLAVGCVNLEYLA  329 (590)
Q Consensus       252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~  329 (590)
                      +.++.+++.++ .+|..+   .+++++|++++|.++...+..+..+++|++|++++|.+...  .+.... .+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEE
Confidence            45677777666 566543   35777788877777744444567777888888887777621  133333 467777777


Q ss_pred             ccCCcCCCccCccccCccccCceeccCccccccCC-ccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCc
Q 007762          330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE  408 (590)
Q Consensus       330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~  408 (590)
                      +++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            77777664 34446667777777777777764433 45666777777777777776666666677777777777777766


Q ss_pred             C-CCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762          409 G-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV  487 (590)
Q Consensus       409 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  487 (590)
                      + ..|..+..+++|++|++++|.+++..+..                        +..+++|+.|++++|.+++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA------------------------FNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTT------------------------TTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHH------------------------hcCCCCCCEEECCCCccCccChhhc
Confidence            4 35666666677777777776665433322                        4445556666666665555444455


Q ss_pred             cccCCCCEEECcCCcccCCCcccccCCC-CCCEEECcCCccCC
Q 007762          488 DGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNNLHG  529 (590)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~  529 (590)
                      ..+++|++|++++|++++..|..+..++ +|+.|++++|++++
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            5556666666666666555555555553 56666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.2e-26  Score=224.90  Aligned_cols=249  Identities=22%  Similarity=0.206  Sum_probs=155.0

Q ss_pred             EEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCc
Q 007762          278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN  357 (590)
Q Consensus       278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  357 (590)
                      .++.+++.++ .+|..+.  ++|++|++++|.+. .+|...+..+++|++|++++|.+....                  
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~------------------   68 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG------------------   68 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEE------------------
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCccc------------------
Confidence            4455555444 3443332  35555555555554 444444444555555555555544211                  


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCC
Q 007762          358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLP  436 (590)
Q Consensus       358 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  436 (590)
                          ..+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+
T Consensus        69 ----~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  143 (306)
T 2z66_A           69 ----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  143 (306)
T ss_dssp             ----EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred             ----CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence                11223334455555555555544 233334455555555555555543332 345555555555555555554444


Q ss_pred             CCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC
Q 007762          437 SCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN  515 (590)
Q Consensus       437 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  515 (590)
                      ..+. +++|++|++++|.+.+...+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..++
T Consensus       144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence            4332 455666666666554422233388899999999999999988889999999999999999999977777899999


Q ss_pred             CCCEEECcCCccCCCCccccccCC-ccccccCCCCCCCc
Q 007762          516 QLQLLDLSNNNLHGPIPPCFDNTT-LHESYSNSSSPNKQ  553 (590)
Q Consensus       516 ~L~~L~l~~n~l~~~~p~~~~~l~-~~~~~~~~~~~~~~  553 (590)
                      +|+.|++++|++++..|..+..+. .+...+...++..+
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            999999999999999998888773 55666666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.2e-29  Score=268.69  Aligned_cols=426  Identities=15%  Similarity=0.069  Sum_probs=280.9

Q ss_pred             CCCCCCCCCCCCeEeCcCCcC---------cccc---ccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccC-CCC-C
Q 007762           11 RGQGFPHFKSLELLDMECTRI---------ALNT---SFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS-LVH-L   76 (590)
Q Consensus        11 ~~~~~~~~~~L~~L~l~~~~~---------~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~-l~~-L   76 (590)
                      |+..+.++++|+.|+++++..         .+.+   .....+...+++|++|+|++|.+++   ..+ ..+.. +++ |
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~---~~~-~~l~~~~~~~L  140 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD---LDL-DRLAKARADDL  140 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH---HHH-HHHHHHHGGGC
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH---HHH-HHHHHhccccC
Confidence            335678899999999988631         0011   1123334478999999999998765   222 33444 344 9


Q ss_pred             cEEEeeccc-ccc-cCCccccCCCCCcEEEccccccccc----cCCCCccCCCCCcEEECcCCcccc---ccCccccccC
Q 007762           77 QELYIYNND-LRG-SLPWCMANMTSLRILYVSSNQLTGS----ISSSPLVHLTSIEELHLSNNHFQI---PISLEPLFNH  147 (590)
Q Consensus        77 ~~L~L~~n~-i~~-~~~~~~~~l~~L~~L~ls~n~l~~~----~~~~~l~~l~~L~~L~ls~n~~~~---~~~~~~l~~l  147 (590)
                      ++|++++|. +.. .++.....+++|++|++++|.+++.    ++. .+..+++|++|++++|.+.+   ..-...+.++
T Consensus       141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            999999886 221 2233345789999999999987633    222 34568899999999988751   1112345678


Q ss_pred             CCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCC---CcCChhccCCCcccEEEcCCCcCccccchHHhhcC
Q 007762          148 SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG---VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN  224 (590)
Q Consensus       148 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l  224 (590)
                      ++|+.|++++|.+......    .....+|+.|+++. ....   ...+..+..+++|+.++++++... .++.. +..+
T Consensus       220 ~~L~~L~L~~~~~~~l~~~----~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~  292 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGF----FKAAANLEEFCGGS-LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPIL-FPFA  292 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHH----HHHCTTCCEEEECB-CCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGG-GGGG
T ss_pred             CCCcEEeccCccHHHHHHH----HhhhhHHHhhcccc-cccccchHHHHHHhhccccccccCccccchh-HHHHH-Hhhc
Confidence            9999999999876542211    11223788888842 2221   234456677889999999886432 45544 4788


Q ss_pred             CCCcEEEccCCCCCCCCc-CCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccC-----------ceeccc-CC
Q 007762          225 TNLESLFLVNDSLAGPFR-LPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM-----------NALDGS-IP  291 (590)
Q Consensus       225 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~~~~~-~~  291 (590)
                      ++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+...+++|++|++++           +.+++. ++
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            999999999988654332 224678899999998 4444344444545588999999983           455432 22


Q ss_pred             cccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc----CCcCCCc-----cCccccCccccCceeccCcc--cc
Q 007762          292 SSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS----NNSLEGH-----MFSRNFNLTNLKWLQLEGNH--FV  360 (590)
Q Consensus       292 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~i~~~-----~~~~~~~l~~L~~L~l~~~~--~~  360 (590)
                      .....+++|++|+++.+.+++..+..+...+++|+.|+++    .+.+++.     ++..+..+++|++|++++|.  ++
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~  451 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT  451 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence            2344578999999988888866666666568899999996    5556543     22235568899999997544  44


Q ss_pred             ccCCccc-cCCCCCCEEEccCCccccc-CccccCCCCCccEEECCCCcCcCC-CCcccCCCCCCcEEEcccCcCCCCCCC
Q 007762          361 GEIPQSL-SKCFVLEGLFLNNNSLSGM-IPRWLGNLTRLQHIMMPKNHLEGP-IPVEFCQLDWLQILDISDNNISGSLPS  437 (590)
Q Consensus       361 ~~~~~~l-~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~  437 (590)
                      +.....+ ..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|++++....
T Consensus       452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~  531 (592)
T 3ogk_B          452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD  531 (592)
T ss_dssp             HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred             HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence            3333223 3478899999999988753 344567889999999999987643 233345788999999999998765433


Q ss_pred             CC--CCCcccEEEC
Q 007762          438 CF--HPLSIEHVHL  449 (590)
Q Consensus       438 ~~--~~~~L~~L~l  449 (590)
                      .+  .++.+....+
T Consensus       532 ~l~~~~p~l~~~~~  545 (592)
T 3ogk_B          532 LMQMARPYWNIELI  545 (592)
T ss_dssp             GGGGCCTTEEEEEE
T ss_pred             HHHHhCCCcEEEEe
Confidence            33  2444444333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.8e-26  Score=235.81  Aligned_cols=249  Identities=21%  Similarity=0.228  Sum_probs=214.9

Q ss_pred             CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762          275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL  354 (590)
Q Consensus       275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  354 (590)
                      ....++..+..++ .+|..+.  +.+++|++++|.+. .++...+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4567888888887 6777665  68999999999998 666555667999999999999999888888999999999999


Q ss_pred             cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCc-CcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762          355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDISDNNISG  433 (590)
Q Consensus       355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~  433 (590)
                      ++|.+....+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..|..+++|++|++++|.++ 
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            9999997666789999999999999999998777789999999999999955 44344557899999999999999998 


Q ss_pred             CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccC
Q 007762          434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK  513 (590)
Q Consensus       434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  513 (590)
                      .+|....+++|+.|++++|.+++ ++...|.++++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus       199 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          199 EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             SCCCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             cccccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            45666678899999999999954 54455999999999999999999888889999999999999999999777778899


Q ss_pred             CCCCCEEECcCCccCC
Q 007762          514 LNQLQLLDLSNNNLHG  529 (590)
Q Consensus       514 l~~L~~L~l~~n~l~~  529 (590)
                      +++|+.|++++|++.-
T Consensus       278 l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             ccCCCEEEcCCCCccC
Confidence            9999999999999863

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.4e-26  Score=226.04  Aligned_cols=235  Identities=20%  Similarity=0.207  Sum_probs=155.3

Q ss_pred             CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCce
Q 007762          273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL  352 (590)
Q Consensus       273 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  352 (590)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+. .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            467888888888877 66777777778888888888777 6766554 4777777777777776 456666677777777


Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762          353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       353 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      ++++|.+.+.+|..+...               .....+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus       156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            777766665555544320               01112334556666666666555 45555556666666666666655


Q ss_pred             CCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccccc
Q 007762          433 GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLC  512 (590)
Q Consensus       433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  512 (590)
                      +..+....+++|++|++++|.+.+.++.. +..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            43333333455555555555554555554 66777788888888777777777788888888888888887778888888


Q ss_pred             CCCCCCEEECcCCccC
Q 007762          513 KLNQLQLLDLSNNNLH  528 (590)
Q Consensus       513 ~l~~L~~L~l~~n~l~  528 (590)
                      .+++|+.+++..+.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            8888888877776554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.5e-26  Score=235.97  Aligned_cols=249  Identities=22%  Similarity=0.220  Sum_probs=213.3

Q ss_pred             CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762          275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL  354 (590)
Q Consensus       275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  354 (590)
                      ....++.++..++ .+|..+.  +++++|++++|.+. .++...+..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            4567888888877 6776654  68999999999998 555455567999999999999999888888999999999999


Q ss_pred             cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCc-CcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762          355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDISDNNISG  433 (590)
Q Consensus       355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~  433 (590)
                      ++|.+....+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..|..+++|++|++++|.+++
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            9999997777789999999999999999997777789999999999999954 443344578999999999999999985


Q ss_pred             CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccC
Q 007762          434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK  513 (590)
Q Consensus       434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  513 (590)
                       ++....+++|+.|++++|.+.+ +++..|.++++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus       211 -~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 -MPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             -CCCCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             -cccccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence             4666678899999999999964 44455999999999999999999888888999999999999999999777777889


Q ss_pred             CCCCCEEECcCCccCC
Q 007762          514 LNQLQLLDLSNNNLHG  529 (590)
Q Consensus       514 l~~L~~L~l~~n~l~~  529 (590)
                      +++|+.|++++|++..
T Consensus       289 l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             ccCCCEEEccCCCcCC
Confidence            9999999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=8.5e-26  Score=232.24  Aligned_cols=248  Identities=24%  Similarity=0.287  Sum_probs=218.2

Q ss_pred             cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762          250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA  329 (590)
Q Consensus       250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  329 (590)
                      ..+.++.++..++ .+|..+   .++++.|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            4568889998887 788766   469999999999999888889999999999999999998 66666667799999999


Q ss_pred             ccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCC-cccccCccccCCCCCccEEECCCCcCc
Q 007762          330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN-SLSGMIPRWLGNLTRLQHIMMPKNHLE  408 (590)
Q Consensus       330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~~~  408 (590)
                      +++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..|..+++|+.|++++|.+.
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            9999999877778999999999999999999777778999999999999995 455445557999999999999999998


Q ss_pred             CCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762          409 GPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV  487 (590)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  487 (590)
                       .+| .+..+++|+.|++++|.+++..+..+. +++|+.|++++|.+. .++...|..+++|+.|+|++|++++..+..|
T Consensus       199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence             445 488999999999999999988777665 789999999999995 5555569999999999999999998888889


Q ss_pred             cccCCCCEEECcCCcccC
Q 007762          488 DGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~  505 (590)
                      ..+++|+.|++++|++..
T Consensus       276 ~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             SSCTTCCEEECCSSCEEC
T ss_pred             ccccCCCEEEcCCCCccC
Confidence            999999999999999863

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.8e-26  Score=232.66  Aligned_cols=248  Identities=21%  Similarity=0.228  Sum_probs=216.7

Q ss_pred             cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762          250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA  329 (590)
Q Consensus       250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  329 (590)
                      ..+.++.++..++ .+|..+   .+++++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence            4567888888887 788655   469999999999999888899999999999999999998 66655566799999999


Q ss_pred             ccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCC-cccccCccccCCCCCccEEECCCCcCc
Q 007762          330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN-SLSGMIPRWLGNLTRLQHIMMPKNHLE  408 (590)
Q Consensus       330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~~~  408 (590)
                      +++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+.
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            9999999887888999999999999999999777778999999999999995 455444557899999999999999998


Q ss_pred             CCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762          409 GPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV  487 (590)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  487 (590)
                      +. | .+..+++|+.|++++|.+++..+..+. +++|+.|++++|.+. .++...|..+++|+.|+|++|.+++..+..|
T Consensus       210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            53 4 588899999999999999988777654 789999999999996 4555559999999999999999998888889


Q ss_pred             cccCCCCEEECcCCcccC
Q 007762          488 DGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~  505 (590)
                      ..+++|++|++++|++..
T Consensus       287 ~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCTTCCEEECCSSCEEC
T ss_pred             ccccCCCEEEccCCCcCC
Confidence            999999999999999873

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.5e-25  Score=236.90  Aligned_cols=268  Identities=25%  Similarity=0.255  Sum_probs=185.0

Q ss_pred             CCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEc
Q 007762          226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV  305 (590)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  305 (590)
                      +++.|+++++.+.. +|..+.  ++|+.|++++|.++ .+|.    .+++|++|++++|.++ .+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            45555555555553 222222  56666666666665 4444    2556666666666665 3443   4566667777


Q ss_pred             cCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762          306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG  385 (590)
Q Consensus       306 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  385 (590)
                      ++|.+. .+|.    .+++|+.|++++|.+... |.   .+++|++|++++|.+.+ +|.   .+++|+.|++++|.+++
T Consensus       109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             CSCCCC-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             cCCcCC-CCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            766666 4444    256677777777766652 22   23677777777777663 332   24567788888887774


Q ss_pred             cCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcccccc
Q 007762          386 MIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFN  465 (590)
Q Consensus       386 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  465 (590)
                       ++   ..+++|+.|++++|.+.+ +|.   .+++|+.|++++|.++.. +..  +++|+.|++++|.++ .++    ..
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~~--~~~L~~L~Ls~N~L~-~lp----~~  239 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PAL--PSGLKELIVSGNRLT-SLP----VL  239 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS-CCC----CC
T ss_pred             -Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CCC--CCCCCEEEccCCccC-cCC----CC
Confidence             33   446778888888888774 343   246788888888888743 332  478888888888885 455    34


Q ss_pred             CCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762          466 YHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       466 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                      +++|+.|++++|.++ .+|.   .+++|++|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            578999999999998 4555   5689999999999999 7888999999999999999999999998888765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=230.18  Aligned_cols=285  Identities=18%  Similarity=0.184  Sum_probs=226.4

Q ss_pred             CCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCc
Q 007762          198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF  277 (590)
Q Consensus       198 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  277 (590)
                      .|+.....+.+++.++ .+|..+   .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.. +++|+
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~  103 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLE  103 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCC
T ss_pred             CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCC
Confidence            3455566889998887 788754   369999999999999877778999999999999999998544555554 89999


Q ss_pred             EEEccCceecccCCcccCCCCCCcEEEccCcccccccch-hhhcCCCCCcEEEccCC-cCCCccCccccCccccCceecc
Q 007762          278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE-HLAVGCVNLEYLALSNN-SLEGHMFSRNFNLTNLKWLQLE  355 (590)
Q Consensus       278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~  355 (590)
                      +|++++|.+++..+..++.+++|++|++++|.+. .++. ..+..+++|++|++++| .+....+..+..+++|++|+++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            9999999999655555899999999999999998 7776 55667999999999999 4666667788999999999999


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccC---CCCCCcEEEcccCcCC
Q 007762          356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC---QLDWLQILDISDNNIS  432 (590)
Q Consensus       356 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~l~~n~l~  432 (590)
                      +|.+.+..+..+..+++|++|++++|.++......+..+++|+.|++++|.+.+..+..+.   ....++.++++++.+.
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~  262 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT  262 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence            9999988889999999999999999998754444456689999999999999865544332   2445555555555443


Q ss_pred             CCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCc
Q 007762          433 GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP  508 (590)
Q Consensus       433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  508 (590)
                                        ++.+ ..++.. +..+++|+.|++++|.++...+..|..+++|++|++++|++++..|
T Consensus       263 ------------------~~~l-~~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          263 ------------------DESL-FQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ------------------HHHH-HHHHHH-HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ------------------Ccch-hhhHHH-HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                              1222 134444 7788999999999999995444446889999999999999986543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.6e-25  Score=216.30  Aligned_cols=226  Identities=24%  Similarity=0.220  Sum_probs=144.2

Q ss_pred             cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccC
Q 007762          301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  380 (590)
Q Consensus       301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  380 (590)
                      ++++.+++.+. .+|...   .+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            34455555554 444332   34555555555555554445555556666666666655555455556666666666666


Q ss_pred             Cc-ccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECcCccCCCCC
Q 007762          381 NS-LSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQL  458 (590)
Q Consensus       381 n~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~  458 (590)
                      |. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.++ .+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence            65 554445556666666666666666665555556666666666666666665544433 2556666666666663 45


Q ss_pred             CccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762          459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI  531 (590)
Q Consensus       459 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  531 (590)
                      +...+..+++|+.|++++|.+++..|.++..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            5544777788888888888888777777888888888888888888666666788888888888888887543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=2.6e-29  Score=269.61  Aligned_cols=444  Identities=13%  Similarity=0.074  Sum_probs=216.0

Q ss_pred             ccchHhhhcCCCCcEEecCCCCCCCCCCCCC------------cccccCCCCCcEEEeecccccccCCcccc-CCCCCcE
Q 007762           36 SFLQIISESMPSLKYLSLSDSTLGTNSSKIL------------DRGLCSLVHLQELYIYNNDLRGSLPWCMA-NMTSLRI  102 (590)
Q Consensus        36 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~------------~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~  102 (590)
                      ..+..+..++++|++|+++++..... ..+.            ......+++|++|+|++|.+++..+..+. .+++|++
T Consensus        56 ~~~~~~~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  134 (594)
T 2p1m_B           56 VSPATVIRRFPKVRSVELKGKPHFAD-FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV  134 (594)
T ss_dssp             SCHHHHHHHCTTCCEEEEECSCGGGG-GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred             cCHHHHHhhCCCceEEeccCCCchhh-cccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence            34444444777788888777642110 0010            01123466777777777776654444443 5677777


Q ss_pred             EEcccc-ccccc-cCCCCccCCCCCcEEECcCCccccccC--c-cccccCCCccEEEccCCcccccccCCCCCCCCCccc
Q 007762          103 LYVSSN-QLTGS-ISSSPLVHLTSIEELHLSNNHFQIPIS--L-EPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL  177 (590)
Q Consensus       103 L~ls~n-~l~~~-~~~~~l~~l~~L~~L~ls~n~~~~~~~--~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L  177 (590)
                      |++++| .++.. ++. ...++++|++|++++|.+.+...  . .....+++|+.|++++|. .                
T Consensus       135 L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~----------------  196 (594)
T 2p1m_B          135 LVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S----------------  196 (594)
T ss_dssp             EEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S----------------
T ss_pred             EeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C----------------
Confidence            777776 34321 222 23456777777777776542211  0 111244555555555443 0                


Q ss_pred             ceEeccCCCCCCC-cCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC------CCcCCCCCCCc
Q 007762          178 SRLSLSSGYGDGV-IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG------PFRLPIHSHKR  250 (590)
Q Consensus       178 ~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~~  250 (590)
                               .+.. .++.....+++|++|++++|...+.++.. +..+++|+.|.+..+...-      ..+..+..+++
T Consensus       197 ---------~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~  266 (594)
T 2p1m_B          197 ---------EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE  266 (594)
T ss_dssp             ---------CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred             ---------cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence                     0110 12222345678888888877332234443 4677888888776553210      01123455666


Q ss_pred             ccEE-EccCCcCCCCCchhhhhcCCCCcEEEccCceeccc-CCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEE
Q 007762          251 LRLL-DISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGS-IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL  328 (590)
Q Consensus       251 L~~L-~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  328 (590)
                      |+.+ .+.+... +.++..+. .+++|++|++++|.+++. +...+..+++|++|++++| +.+.....+...+++|++|
T Consensus       267 L~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          267 LRCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             CCEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             cccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence            6666 3333221 12332222 256777777777665432 2223456667777777666 3322222233336666666


Q ss_pred             EccCCcCCCccCccccCccccCceeccCccccccCCcc-ccCCCCCCEEEccCCcccccCccccC-CCCCccEEECC--C
Q 007762          329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGMIPRWLG-NLTRLQHIMMP--K  404 (590)
Q Consensus       329 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~--~  404 (590)
                      ++..+...+               ....+.+++..... ...+++|+.|.++.+.+++.....+. .+++|+.|+++  +
T Consensus       344 ~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          344 RVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             EEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             EEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            664321000               00001111100001 11244455554444444433222222 24455555554  1


Q ss_pred             ----CcCcCC-----CCcccCCCCCCcEEEcccCcCCCCCCCCC--CCCcccEEECcCccCCCCCCccccccCCCCcEEE
Q 007762          405 ----NHLEGP-----IPVEFCQLDWLQILDISDNNISGSLPSCF--HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD  473 (590)
Q Consensus       405 ----n~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  473 (590)
                          +.+++.     ++..+..+++|+.|++++ .+++.....+  .+++|+.|++++|.+++.........+++|+.|+
T Consensus       409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence                222211     011133455566666544 3322111111  1445555666555553333322225678888888


Q ss_pred             cCCCcCCCCccc-cccccCCCCEEECcCCcccCCCcccc-cCCCCCCEEECcCCcc
Q 007762          474 LSYNRLNGSISD-WVDGLSQLSHLILGHNNLEGEVPVQL-CKLNQLQLLDLSNNNL  527 (590)
Q Consensus       474 ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l  527 (590)
                      +++|.+++.... .+..+++|++|++++|+++......+ ..+|.|+...+..+.-
T Consensus       488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            888888643332 34557888888888888754333333 4567776666665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=6.2e-26  Score=223.08  Aligned_cols=219  Identities=20%  Similarity=0.232  Sum_probs=164.4

Q ss_pred             CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762          323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM  402 (590)
Q Consensus       323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  402 (590)
                      +.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            44555555555554 23444445555555555555555 45555555566666666666555 44555556666666666


Q ss_pred             CCCcCcCCCCccc---------CCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEE
Q 007762          403 PKNHLEGPIPVEF---------CQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD  473 (590)
Q Consensus       403 ~~n~~~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  473 (590)
                      ++|.+.+.+|..+         ..+++|++|++++|.++........+++|++|++++|.+. .++.. +..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEE
Confidence            6655555555544         4599999999999999844334445889999999999996 56665 89999999999


Q ss_pred             cCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccC
Q 007762          474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN  546 (590)
Q Consensus       474 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~  546 (590)
                      +++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|+.+.+++.+.....
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999876554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.5e-25  Score=216.59  Aligned_cols=258  Identities=21%  Similarity=0.209  Sum_probs=151.1

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc
Q 007762          252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS  331 (590)
Q Consensus       252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  331 (590)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            45666666665 555433   346677777776666555555666666666666666665 3322223345556666665


Q ss_pred             CCc-CCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCC
Q 007762          332 NNS-LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP  410 (590)
Q Consensus       332 ~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  410 (590)
                      +|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            554 4443344455555555555555555444444444445555555555544433333344444444444444444433


Q ss_pred             CCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccc
Q 007762          411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGL  490 (590)
Q Consensus       411 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  490 (590)
                      .+..|..+                       ++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..+..+..+
T Consensus       169 ~~~~~~~l-----------------------~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l  224 (285)
T 1ozn_A          169 PERAFRGL-----------------------HSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPL  224 (285)
T ss_dssp             CTTTTTTC-----------------------TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             CHHHhcCc-----------------------cccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHcccC
Confidence            33334444                       45555555555553333333 7788899999999999998777788999


Q ss_pred             CCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762          491 SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       491 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                      ++|++|++++|++....+.. .....++.+..+.+.+....|+.+.+..
T Consensus       225 ~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~  272 (285)
T 1ozn_A          225 RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD  272 (285)
T ss_dssp             TTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCB
T ss_pred             cccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcC
Confidence            99999999999988543321 1123345556777888878887776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-27  Score=232.65  Aligned_cols=267  Identities=18%  Similarity=0.177  Sum_probs=172.7

Q ss_pred             ccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEc
Q 007762          251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLAL  330 (590)
Q Consensus       251 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  330 (590)
                      ++..+++.+.+. ..+..+...+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+   +..+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            334444444443 3333333335566666666666665555566666666666666666653322   334666666666


Q ss_pred             cCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCC
Q 007762          331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP  410 (590)
Q Consensus       331 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  410 (590)
                      ++|.+.+..     ..++|++|++++|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            666655422     235667777777666544332   246677777777777766666677777777888877777765


Q ss_pred             CCccc-CCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccc
Q 007762          411 IPVEF-CQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG  489 (590)
Q Consensus       411 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  489 (590)
                      .+..+ ..+++|++|++++|.+++. +....+++|++|++++|.++ .++.. +..+++|+.|++++|.++ .+|..+..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCC-cchhh-hcccCcccEEECcCCccc-chhhHhhc
Confidence            55555 3677788888888877644 33334667777777777774 45555 777788888888888887 46667777


Q ss_pred             cCCCCEEECcCCccc-CCCcccccCCCCCCEEECc-CCccCCCCcc
Q 007762          490 LSQLSHLILGHNNLE-GEVPVQLCKLNQLQLLDLS-NNNLHGPIPP  533 (590)
Q Consensus       490 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~-~n~l~~~~p~  533 (590)
                      +++|++|++++|+++ +.+|..+..+++|+.++++ .+.+.+..|.
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            888888888888887 6667777888888888887 3445554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.4e-29  Score=268.67  Aligned_cols=432  Identities=14%  Similarity=0.104  Sum_probs=247.7

Q ss_pred             cCCCCCCCCCCCCeEeCcCCcCcccccc--------------chHhhhcCCCCcEEecCCCCCCCCCCCCCccccc-CCC
Q 007762           10 LRGQGFPHFKSLELLDMECTRIALNTSF--------------LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLC-SLV   74 (590)
Q Consensus        10 i~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~-~l~   74 (590)
                      .|...+.++++|+.|+++++.  ....+              ...+...+++|++|+|++|.+++   ..+ ..+. .++
T Consensus        57 ~~~~~~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~---~~~-~~l~~~~~  130 (594)
T 2p1m_B           57 SPATVIRRFPKVRSVELKGKP--HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD---DCL-ELIAKSFK  130 (594)
T ss_dssp             CHHHHHHHCTTCCEEEEECSC--GGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH---HHH-HHHHHHCT
T ss_pred             CHHHHHhhCCCceEEeccCCC--chhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH---HHH-HHHHHhCC
Confidence            343457788999999999984  11111              12334478999999999998876   333 3454 689


Q ss_pred             CCcEEEeecc-ccccc-CCccccCCCCCcEEEccccccccccCC---CCccCCCCCcEEECcCCc--cccccCccccccC
Q 007762           75 HLQELYIYNN-DLRGS-LPWCMANMTSLRILYVSSNQLTGSISS---SPLVHLTSIEELHLSNNH--FQIPISLEPLFNH  147 (590)
Q Consensus        75 ~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~---~~l~~l~~L~~L~ls~n~--~~~~~~~~~l~~l  147 (590)
                      +|++|++++| .+++. ++..+..+++|++|++++|.+++..+.   .....+++|++|++++|.  +...........+
T Consensus       131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~  210 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC  210 (594)
T ss_dssp             TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred             CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence            9999999999 55432 445556899999999999987632211   133467899999999986  2211111223457


Q ss_pred             CCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCc-------CccccchHH
Q 007762          148 SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMK-------MNGEFPTWL  220 (590)
Q Consensus       148 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-------~~~~~~~~~  220 (590)
                      ++|+.|++++|...                           . .++..+..+++|++|+++.+.       +. .++.. 
T Consensus       211 ~~L~~L~L~~~~~~---------------------------~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~-  260 (594)
T 2p1m_B          211 PNLKSLKLNRAVPL---------------------------E-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA-  260 (594)
T ss_dssp             TTCCEEECCTTSCH---------------------------H-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH-
T ss_pred             CCCcEEecCCCCcH---------------------------H-HHHHHHhcCCcceEcccccccCccchhhHH-HHHHH-
Confidence            88998888876211                           1 134455666777777765442       22 23333 


Q ss_pred             hhcCCCCcEE-EccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecc-cCCcccCCCC
Q 007762          221 LENNTNLESL-FLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDG-SIPSSFGNMK  298 (590)
Q Consensus       221 ~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~  298 (590)
                      +.++++|+.+ .+..... ...+..+..+++|+.|++++|.+++.....+...+++|++|++++| ++. .++.....++
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            3677788777 3332221 1122223356778888888877654333343444778888888877 332 2222233467


Q ss_pred             CCcEEEccC---------cccccccchhhhcCCCCCcEEEccCCcCCCccCcccc-CccccCceecc--C----cccccc
Q 007762          299 FLQLLDVTN---------NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLE--G----NHFVGE  362 (590)
Q Consensus       299 ~L~~L~l~~---------n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~  362 (590)
                      +|++|++.+         +.+++.....+...+++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.++..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            788887743         3344332333333477788877777766654333333 35667777776  2    222210


Q ss_pred             -----CCccccCCCCCCEEEccCCcccccCccccCC-CCCccEEECCCCcCcCCCCccc-CCCCCCcEEEcccCcCCCCC
Q 007762          363 -----IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGN-LTRLQHIMMPKNHLEGPIPVEF-CQLDWLQILDISDNNISGSL  435 (590)
Q Consensus       363 -----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~  435 (590)
                           ++..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|      
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n------  491 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC------  491 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC------
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC------
Confidence                 111134455555555544 333322222222 4555555555555433222222 33444555555544      


Q ss_pred             CCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc-cccCCCCEEECcCCcc
Q 007762          436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNL  503 (590)
Q Consensus       436 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l  503 (590)
                                       .+++......+..+++|+.|++++|.++......+ ..+++|+...+..+.-
T Consensus       492 -----------------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          492 -----------------PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             -----------------SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             -----------------CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence                             44222222224557889999999998864433334 5567777766665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.1e-27  Score=228.60  Aligned_cols=248  Identities=23%  Similarity=0.184  Sum_probs=142.7

Q ss_pred             CCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceec-ccCCcccC-------CCCCCcEEEccCcccccccchhhh
Q 007762          248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALD-GSIPSSFG-------NMKFLQLLDVTNNQLTGEIPEHLA  319 (590)
Q Consensus       248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~~  319 (590)
                      .++|+.+++++|.+  .+|..+..   .++.|++++|.++ ..++..+.       .+++|++|++++|.+.+.+|..++
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34555566666655  45555543   2566666666553 23333332       455566666666655555554432


Q ss_pred             -cCCCCCcEEEccCCcCCCccCccccCc-----cccCceeccCccccccCCccccCCCCCCEEEccCCccccc--Cccc-
Q 007762          320 -VGCVNLEYLALSNNSLEGHMFSRNFNL-----TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM--IPRW-  390 (590)
Q Consensus       320 -~~~~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~-  390 (590)
                       ..+++|++|++++|.+.+. +..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .+.. 
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             3455555555555555544 4444333     5566666666666555555566666666666666665432  1122 


Q ss_pred             -cCCCCCccEEECCCCcCcCC--CC-cccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccC
Q 007762          391 -LGNLTRLQHIMMPKNHLEGP--IP-VEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNY  466 (590)
Q Consensus       391 -~~~l~~L~~L~L~~n~~~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  466 (590)
                       +..+++|++|++++|.+.+.  ++ ..+..+++|++|++++|.+++                       ..+...+..+
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~~l  252 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-----------------------AAGAPSCDWP  252 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-----------------------SCCCSCCCCC
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-----------------------ccchhhhhhc
Confidence             25566666666666665521  11 223455666666666666553                       3322224456


Q ss_pred             CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          467 HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      ++|+.|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            77888888888877 5666555  7788888888888754 55 7778888888888888775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=7.4e-24  Score=223.94  Aligned_cols=268  Identities=24%  Similarity=0.298  Sum_probs=214.1

Q ss_pred             cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762          201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN  280 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  280 (590)
                      +++.|+++++.+. .+|..+   .++|+.|++++|.+.... .   .+++|++|++++|.++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            5788999998887 777654   278999999999888533 2   5678999999999887 5665    378999999


Q ss_pred             ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc
Q 007762          281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV  360 (590)
Q Consensus       281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  360 (590)
                      +++|.+++ +|.   .+++|+.|++++|.++ .+|..    +++|++|++++|.+.+. +.   .+++|+.|++++|.+.
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence            99998884 554   5678999999999887 66653    58899999999988763 32   3578899999999988


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC
Q 007762          361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH  440 (590)
Q Consensus       361 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  440 (590)
                      + +|   ..+++|+.|++++|.+++ ++.   ..++|+.|++++|.+.. +|.   .+++|+.|++++|.+++. |  ..
T Consensus       175 ~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p--~~  239 (622)
T 3g06_A          175 S-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P--VL  239 (622)
T ss_dssp             C-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C--CC
T ss_pred             C-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C--CC
Confidence            4 44   457889999999999885 333   34789999999999884 443   247899999999999863 4  33


Q ss_pred             CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC
Q 007762          441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN  515 (590)
Q Consensus       441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  515 (590)
                      +++|+.|++++|.++ .+|.    .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            588999999999985 5665    4688999999999999 7788899999999999999999988888776554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=4e-26  Score=223.78  Aligned_cols=268  Identities=17%  Similarity=0.174  Sum_probs=158.8

Q ss_pred             cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762          201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN  280 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  280 (590)
                      .++..+++.+.+. ..+..++..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+  +. .+++|++|+
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~   86 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLD   86 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET-TCTTCCEEE
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh-hcCCCCEEE
Confidence            5666777777665 4444555666677777777777776655566667777777777776653332  22 256666666


Q ss_pred             ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc
Q 007762          281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV  360 (590)
Q Consensus       281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  360 (590)
                      +++|.+++. +    ..++|++|++++|.+. .++..   .+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        87 Ls~n~l~~l-~----~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           87 LNNNYVQEL-L----VGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CCSSEEEEE-E----ECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CcCCccccc-c----CCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            666666532 2    1256666666666665 33222   1445566666666555544444555555555555555554


Q ss_pred             ccCCccc-cCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC
Q 007762          361 GEIPQSL-SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  439 (590)
Q Consensus       361 ~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  439 (590)
                      +..+..+ ..+++|++|++++|.+++.                         + ....+++|++|++++|.+++..+...
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------------~-~~~~l~~L~~L~Ls~N~l~~l~~~~~  211 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDV-------------------------K-GQVVFAKLKTLDLSSNKLAFMGPEFQ  211 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEE-------------------------E-CCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred             cccHHHHhhccCcCCEEECCCCcCccc-------------------------c-cccccccCCEEECCCCcCCcchhhhc
Confidence            4333333 2344555555555544432                         1 11224455555555555544433333


Q ss_pred             CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC-CCccccccccCCCCEEECcCC-cccCCCcc
Q 007762          440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHN-NLEGEVPV  509 (590)
Q Consensus       440 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~  509 (590)
                      .+++|+.|++++|.++ .++.. +..+++|+.|++++|.+. +.++.++..+++|+.|+++++ .+.+..|.
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            3455555555555553 45554 777889999999999998 778889999999999999955 55555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=8.7e-25  Score=226.63  Aligned_cols=234  Identities=19%  Similarity=0.173  Sum_probs=135.5

Q ss_pred             CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762          275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL  354 (590)
Q Consensus       275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  354 (590)
                      +|++|++++|.+++..|..|..+++|++|++++|.+.+..+   +..+++|++|++++|.+.+..+     .++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            56666666666665555566666666666666666653333   3345666666666665554221     256666666


Q ss_pred             cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccC-CCCCCcEEEcccCcCCC
Q 007762          355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNISG  433 (590)
Q Consensus       355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~  433 (590)
                      ++|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            66666543332   245667777777777666666666677777777777777665565554 56777777777777664


Q ss_pred             CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc-CCCccccc
Q 007762          434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE-GEVPVQLC  512 (590)
Q Consensus       434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~  512 (590)
                      ..+ ...+++|+.|++++|.++ .+++. +..+++|+.|++++|.+++ +|.++..+++|+.|++++|++. +.+|..+.
T Consensus       184 ~~~-~~~l~~L~~L~Ls~N~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VKG-QVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EEC-CCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             ccc-cccCCCCCEEECCCCCCC-CCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            422 222455555555555553 23333 5555566666666666652 4445555556666666666555 34445555


Q ss_pred             CCCCCCEEECc
Q 007762          513 KLNQLQLLDLS  523 (590)
Q Consensus       513 ~l~~L~~L~l~  523 (590)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            55555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.2e-25  Score=217.98  Aligned_cols=248  Identities=23%  Similarity=0.234  Sum_probs=180.0

Q ss_pred             cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCC-CCCchhhh------hcCCCCcEEEccCceecccCCccc-
Q 007762          223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFR-GHIPVEIG------DVLPGLFSLNISMNALDGSIPSSF-  294 (590)
Q Consensus       223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~------~~~~~L~~L~L~~n~~~~~~~~~l-  294 (590)
                      ..++|+.+++++|.+  .++..+..  .|+.|++++|.+. ..++..+.      ..+++|++|++++|.+++.+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            445566666666665  23332222  2677777777763 34555443      127899999999999988888876 


Q ss_pred             -CCCCCCcEEEccCcccccccchhhhcCC-----CCCcEEEccCCcCCCccCccccCccccCceeccCcccccc--CCcc
Q 007762          295 -GNMKFLQLLDVTNNQLTGEIPEHLAVGC-----VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE--IPQS  366 (590)
Q Consensus       295 -~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~  366 (590)
                       ..+++|++|++++|.+.+. |..+. .+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence             8899999999999999844 64443 23     8999999999999988888999999999999999997654  2333


Q ss_pred             c--cCCCCCCEEEccCCccccc---CccccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC
Q 007762          367 L--SKCFVLEGLFLNNNSLSGM---IPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH  440 (590)
Q Consensus       367 l--~~~~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~  440 (590)
                      +  ..+++|++|++++|.+++.   ....+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+ 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~-  272 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-  272 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc-
Confidence            3  7899999999999999832   22345678999999999999997764 45666788888888888887 333222 


Q ss_pred             CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762          441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (590)
                                             .  ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       273 -----------------------~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 -----------------------P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -----------------------C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -----------------------c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence                                   1  4567777777777644 44 6667777777777777663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=4e-23  Score=198.44  Aligned_cols=207  Identities=23%  Similarity=0.239  Sum_probs=123.7

Q ss_pred             CCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECC
Q 007762          324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP  403 (590)
Q Consensus       324 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  403 (590)
                      ++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            44444444444444333344445555555555555444344444555555555555555554444455555555555555


Q ss_pred             CCcCcCCCCcccCCCCCCcEEEcccCcCCCC-CCCCC-CCCcccEEECcCccCCCCCCccccccCCCCc----EEEcCCC
Q 007762          404 KNHLEGPIPVEFCQLDWLQILDISDNNISGS-LPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLV----TLDLSYN  477 (590)
Q Consensus       404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~ls~n  477 (590)
                      +|.+.+..+..+..+++|++|++++|.+.+. +|..+ .+++|++|++++|.++ .++...+..+++|+    .|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccceeeecCCC
Confidence            5555544444455555555555555555432 23222 2455555555555553 33433466666666    8999999


Q ss_pred             cCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       478 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      .+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99866555554 4589999999999997666677899999999999999997654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.2e-22  Score=194.10  Aligned_cols=204  Identities=25%  Similarity=0.308  Sum_probs=127.0

Q ss_pred             CcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEcc
Q 007762          300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  379 (590)
Q Consensus       300 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  379 (590)
                      .+.++++++.++ .+|..+   .+++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            445555555554 444332   2345555555555554444445555555555555555553333444555555555555


Q ss_pred             CCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCC
Q 007762          380 NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLK  459 (590)
Q Consensus       380 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~  459 (590)
                      +|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++                        .++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------~~~  149 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------------------------SLP  149 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC------------------------ccC
Confidence            55555444444555555555555555555444444555555555555555443                        344


Q ss_pred             ccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762          460 RGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI  531 (590)
Q Consensus       460 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  531 (590)
                      ...+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++...-
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            444777888999999999988777777888899999999999998666667888899999999999887543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=4.2e-24  Score=221.47  Aligned_cols=234  Identities=19%  Similarity=0.192  Sum_probs=130.8

Q ss_pred             CCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEc
Q 007762          226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV  305 (590)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  305 (590)
                      +|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|                           +..+++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------------l~~l~~L~~L~L   87 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------------------------LESLSTLRTLDL   87 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---------------------------CTTCTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---------------------------cccCCCCCEEEe
Confidence            55555555555555444445555555555555555543222                           444444444444


Q ss_pred             cCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762          306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG  385 (590)
Q Consensus       306 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  385 (590)
                      ++|.+. .++.     .++|+.|++++|.+.+..+.   .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus        88 s~N~l~-~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A           88 NNNYVQ-ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             CSSEEE-EEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred             cCCcCC-CCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence            444444 2221     24455555555544443222   23445555555555554444455555555555555555555


Q ss_pred             cCccccC-CCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccc
Q 007762          386 MIPRWLG-NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF  464 (590)
Q Consensus       386 ~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  464 (590)
                      ..+..+. .+++|+.|+|++|.+.+..  .+..+++|++|++++|.+++.++....+++|+.|++++|.++ .+|.. +.
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~  234 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LR  234 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CC
T ss_pred             cChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hc
Confidence            4444443 4555666666666555331  222455666666666666655554444556666666666664 35555 67


Q ss_pred             cCCCCcEEEcCCCcCC-CCccccccccCCCCEEECc
Q 007762          465 NYHSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILG  499 (590)
Q Consensus       465 ~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~  499 (590)
                      .+++|+.|++++|.+. +.+|.++..++.|+.+++.
T Consensus       235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            7788999999999887 5677888888888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.3e-22  Score=194.85  Aligned_cols=223  Identities=22%  Similarity=0.269  Sum_probs=129.5

Q ss_pred             EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCC
Q 007762          254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN  333 (590)
Q Consensus       254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  333 (590)
                      ++..+..+. .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            344444444 445433   246667777776666555556666667777777766665 444433444666666666666


Q ss_pred             cCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCccccc-CccccCCCCCccEEECCCCcCcCCCC
Q 007762          334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM-IPRWLGNLTRLQHIMMPKNHLEGPIP  412 (590)
Q Consensus       334 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~  412 (590)
                      .+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            66655555555666666666666666544444555566666666666665542 35555556666666666666554444


Q ss_pred             cccCCCCCCc----EEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccc
Q 007762          413 VEFCQLDWLQ----ILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD  488 (590)
Q Consensus       413 ~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  488 (590)
                      ..+..+++|+    .|++++|.+.+                        ++...+. ..+|+.|++++|.+++..+..|.
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~------------------------~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNF------------------------IQPGAFK-EIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCE------------------------ECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred             HHhhhhhhccccceeeecCCCcccc------------------------cCccccC-CCcccEEECCCCceeecCHhHhc
Confidence            4444444443    45555555443                        3333222 23677777777777766556667


Q ss_pred             ccCCCCEEECcCCcccCC
Q 007762          489 GLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~  506 (590)
                      .+++|++|++++|+++..
T Consensus       222 ~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             TCCSCCEEECCSSCBCCC
T ss_pred             ccccccEEEccCCccccc
Confidence            777777777777777643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=9e-23  Score=195.25  Aligned_cols=211  Identities=21%  Similarity=0.258  Sum_probs=142.2

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      +++|+.|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            44455555555544421  2244455555555555555432  2455666666666666666655555566666666666


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN  480 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (590)
                      +++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|+.|++++|.++ .++...+..+++|+.|++++|.++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCC
Confidence            66666665555556666666666666666665555443 3566677777777664 445454788899999999999999


Q ss_pred             CCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccc
Q 007762          481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  544 (590)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~  544 (590)
                      +..+..+..+++|++|++++|++.+.       +++|+.++++.|.++|.+|.++..+......
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~~~~  251 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPDSAK  251 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGGGSB
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCCCCc
Confidence            88888889999999999999988743       5678899999999999999998876554433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.7e-22  Score=192.39  Aligned_cols=202  Identities=23%  Similarity=0.211  Sum_probs=114.0

Q ss_pred             CCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCC
Q 007762          295 GNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLE  374 (590)
Q Consensus       295 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  374 (590)
                      ..++++++++++++.++ .+|..+   .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+  ...+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             cccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            34455555555555555 454433   2455555555555555444455555555555555555543221  14555566


Q ss_pred             EEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccC
Q 007762          375 GLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNML  454 (590)
Q Consensus       375 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~  454 (590)
                      +|++++|.++ .+|..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+++                     
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------------  138 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------------------  138 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence            6666666655 344455556666666666666655444555666666666666665553                     


Q ss_pred             CCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccC
Q 007762          455 HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH  528 (590)
Q Consensus       455 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (590)
                         ++...|..+++|+.|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus       139 ---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          139 ---LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ---CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ---cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence               33333555566666666666666544455566666666666666666 55555666666666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.7e-21  Score=186.12  Aligned_cols=202  Identities=25%  Similarity=0.308  Sum_probs=122.1

Q ss_pred             cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762          250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA  329 (590)
Q Consensus       250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  329 (590)
                      ..+.++++++.++ .+|..+   .+++++|++++|.++...+..|..+++|++|++++|.+. .++...           
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~-----------   80 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI-----------   80 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTT-----------
T ss_pred             CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhh-----------
Confidence            3455666666655 444433   235556666555555444445555555555555555554 444433           


Q ss_pred             ccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcC
Q 007762          330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG  409 (590)
Q Consensus       330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~  409 (590)
                                   +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        81 -------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           81 -------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             -------------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             -------------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence                         3444555555555555554444455566667777777777666666667777777777777777776


Q ss_pred             CCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccc
Q 007762          410 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG  489 (590)
Q Consensus       410 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  489 (590)
                      ..+..|..+++|++|++++|.+++..                        ...|..+++|+.|++++|.+++..+..|..
T Consensus       148 ~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          148 LPKGVFDKLTSLKELRLYNNQLKRVP------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             cCHhHccCCcccceeEecCCcCcEeC------------------------hhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            55556777777777777777765322                        222555666777777777776555555666


Q ss_pred             cCCCCEEECcCCccc
Q 007762          490 LSQLSHLILGHNNLE  504 (590)
Q Consensus       490 l~~L~~L~L~~n~l~  504 (590)
                      +++|++|++++|++.
T Consensus       204 l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          204 LEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTCCEEECCSSCBC
T ss_pred             ccCCCEEEecCCCee
Confidence            777777777777665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=7.7e-22  Score=190.17  Aligned_cols=187  Identities=23%  Similarity=0.173  Sum_probs=128.0

Q ss_pred             CccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762          345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL  424 (590)
Q Consensus       345 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  424 (590)
                      .++++++++++++.++ .+|..+  .+.++.|++++|.+++..+..+..+++|+.|++++|.+.+..+  ...+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            3445555555555554 333222  1455666666666655555556666666666666666553222  2456666666


Q ss_pred             EcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762          425 DISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       425 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      ++++|.+.........+++|++|++++|.++ .++...|..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            6666666533333334566677777777663 555555889999999999999999888888899999999999999999


Q ss_pred             CCCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762          505 GEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT  538 (590)
Q Consensus       505 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  538 (590)
                      ...+..|..+++|+.|++++|+++ .+|..+...
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~  194 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence            666667788999999999999999 577665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.1e-21  Score=185.75  Aligned_cols=207  Identities=22%  Similarity=0.183  Sum_probs=102.7

Q ss_pred             CCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCcee
Q 007762          274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQ  353 (590)
Q Consensus       274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  353 (590)
                      ++|+.|++++|.++ .+ ..+..+++|++|++++|.+. .++  .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            34444444444443 11 12344444555555544444 222  112344444444444444443333344444444444


Q ss_pred             ccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762          354 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG  433 (590)
Q Consensus       354 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  433 (590)
                      +++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            44444443333334444455555555554444434444444555555555554444333344444455555554444442


Q ss_pred             CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccC
Q 007762          434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK  513 (590)
Q Consensus       434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  513 (590)
                                              ++...+..+++|+.|++++|.+.+       .+++|+.|++..|+++|.+|..++.
T Consensus       196 ------------------------~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          196 ------------------------VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             ------------------------CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             ------------------------cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence                                    233335666777777777776653       2456777777777777777777665


Q ss_pred             CCC
Q 007762          514 LNQ  516 (590)
Q Consensus       514 l~~  516 (590)
                      ++.
T Consensus       245 ~~~  247 (272)
T 3rfs_A          245 VAP  247 (272)
T ss_dssp             BCG
T ss_pred             cCC
Confidence            543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.7e-21  Score=180.42  Aligned_cols=195  Identities=19%  Similarity=0.179  Sum_probs=102.5

Q ss_pred             CCcEEEccCCcCCCccCccccCccccCceeccCcc-ccccCCccccCCCCCCEEEccC-CcccccCccccCCCCCccEEE
Q 007762          324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNN-NSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       324 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      ++++|++++|.+.+..+..+..+++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44444444444444333344445555555555553 4433333445555555555554 555544444455555555555


Q ss_pred             CCCCcCcCCCCcccCCCCCCc---EEEcccC-cCCCCCCCCCC-CCccc-EEECcCccCCCCCCccccccCCCCcEEEcC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQ---ILDISDN-NISGSLPSCFH-PLSIE-HVHLSKNMLHGQLKRGTFFNYHSLVTLDLS  475 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~-~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls  475 (590)
                      +++|.+.+ +|. |..+++|+   +|++++| .+.+..+..+. +++|+ .|++++|.++ .++...+.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence            55555543 333 44445554   5555555 55444333332 44455 5555555553 455444444 567777777


Q ss_pred             CCc-CCCCcccccccc-CCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762          476 YNR-LNGSISDWVDGL-SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  525 (590)
Q Consensus       476 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (590)
                      +|. +++..+..|..+ ++|++|++++|+++ .+|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            773 665555566666 67777777777776 33433  4566667766665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=9.5e-23  Score=203.74  Aligned_cols=258  Identities=19%  Similarity=0.214  Sum_probs=131.7

Q ss_pred             EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCC----cccCCCC-CCcEEEccCcccccccchhhhc---C-CCC
Q 007762          254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIP----SSFGNMK-FLQLLDVTNNQLTGEIPEHLAV---G-CVN  324 (590)
Q Consensus       254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~---~-~~~  324 (590)
                      ++++.|.+++.+|..+. ..++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..   . +++
T Consensus         3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            34555555544333332 23346666666665554333    4455555 5666666666655333332221   1 155


Q ss_pred             CcEEEccCCcCCCccCcccc----Cc-cccCceeccCccccccCCcc----ccC-CCCCCEEEccCCcccccCc----cc
Q 007762          325 LEYLALSNNSLEGHMFSRNF----NL-TNLKWLQLEGNHFVGEIPQS----LSK-CFVLEGLFLNNNSLSGMIP----RW  390 (590)
Q Consensus       325 L~~L~l~~n~i~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~n~~~~~~~----~~  390 (590)
                      |++|++++|.+.+..+..+.    .+ ++|++|++++|.+.+..+..    +.. +++|++|++++|.+++...    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            66666666655543333222    22 45555555555554333322    222 2456666666666553322    22


Q ss_pred             cCCCC-CccEEECCCCcCcCCCCccc----CCC-CCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccc
Q 007762          391 LGNLT-RLQHIMMPKNHLEGPIPVEF----CQL-DWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF  464 (590)
Q Consensus       391 ~~~l~-~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  464 (590)
                      +..++ +|++|++++|.+.+..+..+    ..+ ++|++|++++|.+.+....                   .++.. +.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------------------~l~~~-l~  221 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA-------------------ELAYI-FS  221 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-------------------HHHHH-HH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH-------------------HHHHH-Hh
Confidence            23333 56666666666554443322    223 3555555555555421110                   12222 33


Q ss_pred             c-CCCCcEEEcCCCcCCCCcc----ccccccCCCCEEECcCCcccCC-------CcccccCCCCCCEEECcCCccCCCCc
Q 007762          465 N-YHSLVTLDLSYNRLNGSIS----DWVDGLSQLSHLILGHNNLEGE-------VPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       465 ~-~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      . .++|+.|++++|.+++..+    ..+..+++|++|++++|++.+.       ++..+..+++|+.||+++|++.+..|
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            3 3477777777777775433    3345667777888877774432       23345667777788888887775533

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.7e-21  Score=180.37  Aligned_cols=201  Identities=18%  Similarity=0.194  Sum_probs=118.3

Q ss_pred             CCCcEEEccCceecccCCcccCCCCCCcEEEccCcc-cccccchhhhcCCCCCcEEEccC-CcCCCccCccccCccccCc
Q 007762          274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ-LTGEIPEHLAVGCVNLEYLALSN-NSLEGHMFSRNFNLTNLKW  351 (590)
Q Consensus       274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~  351 (590)
                      +++++|++++|.+++..+..++.+++|++|++++|. +. .++...+..+++|++|++++ |.+....+..|..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            466666666666665555556666666666666665 54 55544444555666666655 5555444444555555555


Q ss_pred             eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCC-cCcCCCCcccCCCCCCc-EEEcccC
Q 007762          352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN-HLEGPIPVEFCQLDWLQ-ILDISDN  429 (590)
Q Consensus       352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~-~L~l~~n  429 (590)
                      |++++|.+.+ +|. +..+++|+                     .|+.|++++| .+.+..+..|..+++|+ .|++++|
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             EeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence            5555555442 232 33444443                     0015555555 44444444455555666 6666666


Q ss_pred             cCCCCCCCCCCCCcccEEECcCcc-CCCCCCccccccC-CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCc
Q 007762          430 NISGSLPSCFHPLSIEHVHLSKNM-LHGQLKRGTFFNY-HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNN  502 (590)
Q Consensus       430 ~l~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  502 (590)
                      .++...+..+..++|+.|++++|+ + ..++...|..+ ++|+.|++++|.+++. |..  .+++|+.|+++++.
T Consensus       167 ~l~~i~~~~~~~~~L~~L~L~~n~~l-~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          167 GFTSVQGYAFNGTKLDAVYLNKNKYL-TVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCEECTTTTTTCEEEEEECTTCTTC-CEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CCcccCHhhcCCCCCCEEEcCCCCCc-ccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            655444444445566666776664 5 35666668888 8999999999999854 433  57788999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.9e-21  Score=189.95  Aligned_cols=202  Identities=17%  Similarity=0.132  Sum_probs=144.5

Q ss_pred             CCCCcEEEccCCcCCCccCccc--cCccccCceeccCccccccCC----ccccCCCCCCEEEccCCcccccCccccCCCC
Q 007762          322 CVNLEYLALSNNSLEGHMFSRN--FNLTNLKWLQLEGNHFVGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT  395 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~  395 (590)
                      +++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4557777777777776666666  667777777777777765433    2334677888888888888777777777788


Q ss_pred             CccEEECCCCcCcCC--C--CcccCCCCCCcEEEcccCcCCCCCCC---C-CCCCcccEEECcCccCCCCCCccccccC-
Q 007762          396 RLQHIMMPKNHLEGP--I--PVEFCQLDWLQILDISDNNISGSLPS---C-FHPLSIEHVHLSKNMLHGQLKRGTFFNY-  466 (590)
Q Consensus       396 ~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~---~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~-  466 (590)
                      +|++|++++|++.+.  +  +..+..+++|++|++++|.++.....   . -.+++|++|++++|.+.+..|.. +..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence            888888888876431  1  22345677888888888877532221   1 13577888888888876555544 4444 


Q ss_pred             --CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          467 --HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       467 --~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                        ++|+.|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence              69999999999998 5676664  7999999999999853 43 6788999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=5.9e-23  Score=207.39  Aligned_cols=247  Identities=19%  Similarity=0.214  Sum_probs=138.6

Q ss_pred             CchhhhhcCCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCcc---cccccchhh------hcCCCCCcEEEcc
Q 007762          265 IPVEIGDVLPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQ---LTGEIPEHL------AVGCVNLEYLALS  331 (590)
Q Consensus       265 ~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~---~~~~~~~~~------~~~~~~L~~L~l~  331 (590)
                      ++..+.. +++|++|++++|.++..    ++..+..+++|++|++++|.   +.+.+|..+      +..+++|++|+++
T Consensus        24 l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3444433 56677777777766643    33345667777777777653   333344333      1235566666666


Q ss_pred             CCcCCC----ccCccccCccccCceeccCccccccCCcc----ccCC---------CCCCEEEccCCcccc-cCc---cc
Q 007762          332 NNSLEG----HMFSRNFNLTNLKWLQLEGNHFVGEIPQS----LSKC---------FVLEGLFLNNNSLSG-MIP---RW  390 (590)
Q Consensus       332 ~n~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~l~~n~~~~-~~~---~~  390 (590)
                      +|.+..    .++..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.++. ..+   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            665554    23333444555555555555543222111    1122         455555555555541 112   23


Q ss_pred             cCCCCCccEEECCCCcCcC-----CCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcccccc
Q 007762          391 LGNLTRLQHIMMPKNHLEG-----PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFN  465 (590)
Q Consensus       391 ~~~l~~L~~L~L~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  465 (590)
                      +..+++|++|++++|.+..     ..+..+..+++|++|++++|.++...                   ...++.. +..
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~~-l~~  242 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAIA-LKS  242 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHHH-GGG
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHHH-Hcc
Confidence            3344555555555554431     11223444445555555444442100                   0234443 677


Q ss_pred             CCCCcEEEcCCCcCCCC----ccccccc--cCCCCEEECcCCcccC----CCcccc-cCCCCCCEEECcCCccCCCCc
Q 007762          466 YHSLVTLDLSYNRLNGS----ISDWVDG--LSQLSHLILGHNNLEG----EVPVQL-CKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       466 ~~~L~~L~ls~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      +++|+.|+|++|.+++.    ++..+..  +++|++|++++|++++    .+|..+ .++++|+.|++++|++++..|
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88899999999988864    4556633  8889999999999886    367766 668999999999999987664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=3e-20  Score=175.46  Aligned_cols=158  Identities=25%  Similarity=0.286  Sum_probs=103.9

Q ss_pred             CCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECc
Q 007762          372 VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLS  450 (590)
Q Consensus       372 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~  450 (590)
                      .++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            44455555555444444444555555555555555554444445555555555555555554443333 24455555555


Q ss_pred             CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCC
Q 007762          451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP  530 (590)
Q Consensus       451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (590)
                      +|.++ .++...+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus       116 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            55553 45555477788999999999999877777888899999999999999877777888899999999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=5.9e-22  Score=196.27  Aligned_cols=254  Identities=19%  Similarity=0.228  Sum_probs=170.9

Q ss_pred             cccEEEccCCcCCCCCchhhhhcC--CCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccc-cchhhhcCCCCCc
Q 007762          250 RLRLLDISNNNFRGHIPVEIGDVL--PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE-IPEHLAVGCVNLE  326 (590)
Q Consensus       250 ~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~  326 (590)
                      .++.++++++.+.   +..+.. +  ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++.. +..+++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCS
T ss_pred             hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCC
Confidence            3677888887765   333333 3  6889999998888865554 55788899999988887744 4443 34578888


Q ss_pred             EEEccCCcCCCccCccccCccccCceeccCc-ccccc-CCccccCCCCCCEEEccCC-ccccc-CccccCCCC-CccEEE
Q 007762          327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGN-HFVGE-IPQSLSKCFVLEGLFLNNN-SLSGM-IPRWLGNLT-RLQHIM  401 (590)
Q Consensus       327 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~  401 (590)
                      +|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            8888888877666666677778888888777 45432 4455666777777777777 66643 345566667 777777


Q ss_pred             CCCCc--Cc-CCCCcccCCCCCCcEEEcccCc-CCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCC
Q 007762          402 MPKNH--LE-GPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN  477 (590)
Q Consensus       402 L~~n~--~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n  477 (590)
                      +++|.  +. +.++..+..+++|++|++++|. ++                       +..+.. +..+++|+.|++++|
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-----------------------~~~~~~-l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----------------------NDCFQE-FFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----------------------GGGGGG-GGGCTTCCEEECTTC
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-----------------------HHHHHH-HhCCCCCCEeeCCCC
Confidence            77773  33 2334455566666666666665 33                       223332 667788999999888


Q ss_pred             c-CCCCccccccccCCCCEEECcCCcccCCCcccccCC-CCCCEEECcCCccCCCCcccccc
Q 007762          478 R-LNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNNLHGPIPPCFDN  537 (590)
Q Consensus       478 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~  537 (590)
                      . ++......+..+++|++|++++| ++..   .+..+ ..+..|++++|++++..|+.+.+
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence            4 33332335778899999999988 5433   23333 23666678999999888887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.7e-20  Score=181.20  Aligned_cols=191  Identities=18%  Similarity=0.250  Sum_probs=107.4

Q ss_pred             CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762          323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM  402 (590)
Q Consensus       323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  402 (590)
                      ++|++|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            3444444444444321 1 23344444444444444442221  44445555555555554432  23445555555555


Q ss_pred             CCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762          403 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS  482 (590)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  482 (590)
                      ++|.+.+ ++ .+..+++|++|++++|.+++..+ ...+++|+.|++++|.+. .++.  +..+++|+.|++++|.+++.
T Consensus       115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCcC
Confidence            5555543 22 24555555555555555543322 223455566666666553 2332  66778888888888888754


Q ss_pred             ccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      .+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            43  777888888888888887543  37788888888888888874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=9.1e-21  Score=197.83  Aligned_cols=234  Identities=23%  Similarity=0.279  Sum_probs=150.9

Q ss_pred             CCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECC
Q 007762          324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP  403 (590)
Q Consensus       324 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  403 (590)
                      +++.|++++|.+.+ +|..+  +++|++|++++|.+. .+|   ..+++|++|++++|.+++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666655 33333  256667777776666 444   345677777777777775 444 443  77778888


Q ss_pred             CCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q 007762          404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI  483 (590)
Q Consensus       404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  483 (590)
                      +|.+.+ +|.   .+++|+.|++++|.+++ +|.  .+++|+.|++++|.+++ +|.  +.  ++|+.|+|++|.++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC-ch
Confidence            777775 444   56778888888888775 333  46778888888888754 665  43  88999999999998 56


Q ss_pred             cccccccCCC-------CEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCCCCccce
Q 007762          484 SDWVDGLSQL-------SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEI  556 (590)
Q Consensus       484 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  556 (590)
                      |. +..  +|       ++|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.....+   .++...+..
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~---~~~~~~~~l  268 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY---HGPRIYFSM  268 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC------CEEECCC
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccc---cCCeeEEee
Confidence            66 554  77       99999999999 688888889999999999999999999988876432211   121111110


Q ss_pred             eccccCCCCCCCCCcccccCCCCCCCCcccccc
Q 007762          557 FFFIQGPQGHPRLATLVMNQHSPAQGHEDLEAQ  589 (590)
Q Consensus       557 ~~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~  589 (590)
                      .-.......+| +|.+...|-+.....+....|
T Consensus       269 ~~~~~~~~~~p-~~~~~~~Wl~~~~~~~~~~~W  300 (571)
T 3cvr_A          269 SDGQQNTLHRP-LADAVTAWFPENKQSDVSQIW  300 (571)
T ss_dssp             ----------C-CSHHHHTTCC-----CHHHHH
T ss_pred             ccccccccccc-chhhHHHHhhhhcccchhhhh
Confidence            00011122455 899999999877766555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.6e-22  Score=202.11  Aligned_cols=205  Identities=19%  Similarity=0.156  Sum_probs=87.9

Q ss_pred             CcEEEccCCCCCCCCc----CCCCCCC-cccEEEccCCcCCCCCchhhhhc----CCCCcEEEccCceecccCCcc----
Q 007762          227 LESLFLVNDSLAGPFR----LPIHSHK-RLRLLDISNNNFRGHIPVEIGDV----LPGLFSLNISMNALDGSIPSS----  293 (590)
Q Consensus       227 L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~~~~~~~~~----  293 (590)
                      |+.|++++|.+.+..+    ..+..++ +|++|++++|.+++..+..+...    +++|++|++++|.+++..+..    
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            4444444444443322    2333444 45555555555544333333321    145555555555554333322    


Q ss_pred             cCCC-CCCcEEEccCcccccccchhhhc---C-CCCCcEEEccCCcCCCccCc----cccCcc-ccCceeccCccccccC
Q 007762          294 FGNM-KFLQLLDVTNNQLTGEIPEHLAV---G-CVNLEYLALSNNSLEGHMFS----RNFNLT-NLKWLQLEGNHFVGEI  363 (590)
Q Consensus       294 l~~l-~~L~~L~l~~n~~~~~~~~~~~~---~-~~~L~~L~l~~n~i~~~~~~----~~~~l~-~L~~L~l~~~~~~~~~  363 (590)
                      +..+ ++|++|++++|.+.+..+..+..   . +.+|++|++++|.+.+....    .+...+ +|++|++++|.+.+..
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            2222 45555555555554322222211   1 23555555555555432211    112222 4555555555544333


Q ss_pred             Cc----cccCC-CCCCEEEccCCccccc----CccccCC-CCCccEEECCCCcCcCCCC----cccCCCCCCcEEEcccC
Q 007762          364 PQ----SLSKC-FVLEGLFLNNNSLSGM----IPRWLGN-LTRLQHIMMPKNHLEGPIP----VEFCQLDWLQILDISDN  429 (590)
Q Consensus       364 ~~----~l~~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n  429 (590)
                      +.    .+..+ ++|+.|++++|.+++.    ++..+.. .++|++|++++|.+.+..+    ..+..+++|++|++++|
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            22    22223 3555555555555432    1222222 2355555555555543322    12334455555555555


Q ss_pred             cC
Q 007762          430 NI  431 (590)
Q Consensus       430 ~l  431 (590)
                      .+
T Consensus       264 ~l  265 (362)
T 3goz_A          264 IV  265 (362)
T ss_dssp             HH
T ss_pred             Cc
Confidence            43

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=6e-20  Score=179.28  Aligned_cols=227  Identities=18%  Similarity=0.173  Sum_probs=143.7

Q ss_pred             CcccEEEcCCCcCccccchHH--hhcCCCCcEEEccCCCCCCCCcCCC--CCCCcccEEEccCCcCCCCCc----hhhhh
Q 007762          200 HDLEYVDLSHMKMNGEFPTWL--LENNTNLESLFLVNDSLAGPFRLPI--HSHKRLRLLDISNNNFRGHIP----VEIGD  271 (590)
Q Consensus       200 ~~L~~L~ls~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~  271 (590)
                      ..++.+.+.++.+.......+  +..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            457888888887754322221  1245779999999999998888777  889999999999999986544    2223 


Q ss_pred             cCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccc--cch-hhhcCCCCCcEEEccCCcCCCccCc---cccC
Q 007762          272 VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE--IPE-HLAVGCVNLEYLALSNNSLEGHMFS---RNFN  345 (590)
Q Consensus       272 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~-~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~  345 (590)
                      .+++|++|++++|.+++..+..++.+++|++|++++|.+.+.  ++. .....+++|++|++++|.++.....   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478999999999999877778888899999999999887532  221 1123456666777776666431111   1234


Q ss_pred             ccccCceeccCccccccCCccccCC---CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCc
Q 007762          346 LTNLKWLQLEGNHFVGEIPQSLSKC---FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ  422 (590)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  422 (590)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++.+. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            5566666666666655444444444   45566666665555 3343332  4555555555555532 21 34445555


Q ss_pred             EEEcccCcCC
Q 007762          423 ILDISDNNIS  432 (590)
Q Consensus       423 ~L~l~~n~l~  432 (590)
                      .|++++|+++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            5555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.7e-20  Score=182.55  Aligned_cols=242  Identities=19%  Similarity=0.144  Sum_probs=148.7

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcE-EEc
Q 007762          252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEY-LAL  330 (590)
Q Consensus       252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~-L~l  330 (590)
                      ++++.++++++ .+|..+   ++++++|++++|.++...+..|+++++|++|++++|.+.+.++...+.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777777777 677654   3577888888888774444567777888888888777765566665555665554 334


Q ss_pred             cCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC-CcCcC
Q 007762          331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK-NHLEG  409 (590)
Q Consensus       331 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~~~~  409 (590)
                      ..|++....+..|..+++|++|++++|.+....+..+                        ....++..+++.+ +.+..
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK------------------------IHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT------------------------CCBSSCEEEEEESCTTCCE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhh------------------------cccchhhhhhhcccccccc
Confidence            4455555555555555555555555555543333333                        3333444444433 23332


Q ss_pred             CCCcccCCCC-CCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccc
Q 007762          410 PIPVEFCQLD-WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD  488 (590)
Q Consensus       410 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  488 (590)
                      ..+..|..+. .++.|++++|.++.+.+..+...+|++++++++...+.++..+|.++++|+.||+++|+++...+..  
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--  221 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--  221 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence            2233344443 4666677777766666666666677777776543336777777788888888888888888443333  


Q ss_pred             ccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762          489 GLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  525 (590)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  525 (590)
                       +.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus       222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence             4456666665554444666 3777888888888754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=9.4e-20  Score=172.05  Aligned_cols=158  Identities=22%  Similarity=0.249  Sum_probs=94.2

Q ss_pred             ccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcc
Q 007762          348 NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS  427 (590)
Q Consensus       348 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  427 (590)
                      +++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            44444444444444444444444555555555555544444445555555555555555554444445555555555555


Q ss_pred             cCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCC
Q 007762          428 DNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       428 ~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      +|.+++..+..+. +++|+.|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5555544444332 455555555555553 44544477788899999999998877777888888999999999988755

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=3.7e-21  Score=190.54  Aligned_cols=200  Identities=17%  Similarity=0.192  Sum_probs=117.5

Q ss_pred             cccEEEcCCCcCccccchHHhhcC--CCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCC-CchhhhhcCCCCc
Q 007762          201 DLEYVDLSHMKMNGEFPTWLLENN--TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGH-IPVEIGDVLPGLF  277 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~  277 (590)
                      .++.++++++.+.   +.. +..+  ++++.|+++++.+.+..+. +..+++|+.|++++|.+++. ++..+. .+++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCS
T ss_pred             hheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCC
Confidence            4678888887765   222 3445  7888888888877765544 44677788888887776643 343333 367777


Q ss_pred             EEEccCceecccCCcccCCCCCCcEEEccCc-ccccc-cchhhhcCCCCCcEEEccCC-cCCCccCccccCccccCceec
Q 007762          278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNN-QLTGE-IPEHLAVGCVNLEYLALSNN-SLEGHMFSRNFNLTNLKWLQL  354 (590)
Q Consensus       278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l  354 (590)
                      +|++++|.+++..+..++.+++|++|++++| .+++. ++.. ...+++|++|++++| .+.+..               
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~---------------  185 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKH---------------  185 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHH---------------
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHH---------------
Confidence            7777777766666666666777777777776 45432 2322 233666666666666 554320               


Q ss_pred             cCccccccCCccccCCC-CCCEEEccCC--ccc-ccCccccCCCCCccEEECCCCc-CcCCCCcccCCCCCCcEEEcccC
Q 007762          355 EGNHFVGEIPQSLSKCF-VLEGLFLNNN--SLS-GMIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDISDN  429 (590)
Q Consensus       355 ~~~~~~~~~~~~l~~~~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n  429 (590)
                              .+..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       186 --------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          186 --------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             --------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             --------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence                    122233444 5555555555  222 2233344555666666666665 44444555666666666666666


Q ss_pred             c
Q 007762          430 N  430 (590)
Q Consensus       430 ~  430 (590)
                      .
T Consensus       258 ~  258 (336)
T 2ast_B          258 Y  258 (336)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=2.3e-19  Score=174.61  Aligned_cols=192  Identities=20%  Similarity=0.288  Sum_probs=106.8

Q ss_pred             CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCce
Q 007762          273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL  352 (590)
Q Consensus       273 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  352 (590)
                      +++|++|++++|.++ .++ .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            446666666666665 233 4555666666666666665 3333  23455666666666655442  234444555555


Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762          353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       353 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      ++++|.+.                        +. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.++
T Consensus       113 ~l~~n~l~------------------------~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          113 DLTSTQIT------------------------DV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ECTTSCCC------------------------CC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCCC------------------------Cc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            55555444                        22 1 14444445555555544442211  444455555555555544


Q ss_pred             CCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762          433 GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (590)
                      +..+ ...+++|+.|++++|.+. .++.  +..+++|+.|++++|.+++..+  +..+++|++|++++|++++
T Consensus       165 ~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          165 DLTP-LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CChh-hcCCCCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            3222 223445555555555553 2332  6677888888888888885543  7788888888888888874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=3.7e-21  Score=194.24  Aligned_cols=240  Identities=18%  Similarity=0.179  Sum_probs=119.4

Q ss_pred             CChhccCCCcccEEEcCCCcCccccchHH---hhcCCCCcEEEccCCCCCC---CCcCC-------CCCCCcccEEEccC
Q 007762          192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWL---LENNTNLESLFLVNDSLAG---PFRLP-------IHSHKRLRLLDISN  258 (590)
Q Consensus       192 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~---~~~~~-------~~~~~~L~~L~l~~  258 (590)
                      ++..+..+++|++|++++|.+.+..+..+   +..+++|+.|++++|.+..   .++..       +..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            45666777788888888887765544332   2456777777777754332   22222       24556666666666


Q ss_pred             CcCCCC----CchhhhhcCCCCcEEEccCceecccCCc----ccCCC---------CCCcEEEccCccccc-ccch--hh
Q 007762          259 NNFRGH----IPVEIGDVLPGLFSLNISMNALDGSIPS----SFGNM---------KFLQLLDVTNNQLTG-EIPE--HL  318 (590)
Q Consensus       259 n~l~~~----~~~~~~~~~~~L~~L~L~~n~~~~~~~~----~l~~l---------~~L~~L~l~~n~~~~-~~~~--~~  318 (590)
                      |.+++.    ++..+.. +++|++|++++|.++...+.    .+..+         ++|++|++++|.+.. .++.  ..
T Consensus       104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            666542    3333333 56666666666665432222    22222         556666666665541 2221  11


Q ss_pred             hcCCCCCcEEEccCCcCCC-----ccCccccCccccCceeccCcccc----ccCCccccCCCCCCEEEccCCccccc---
Q 007762          319 AVGCVNLEYLALSNNSLEG-----HMFSRNFNLTNLKWLQLEGNHFV----GEIPQSLSKCFVLEGLFLNNNSLSGM---  386 (590)
Q Consensus       319 ~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n~~~~~---  386 (590)
                      +..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++    ..++..+..+++|++|++++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            2235555666665555541     11223444555555555555543    23334444455555555555554432   


Q ss_pred             -Ccccc--CCCCCccEEECCCCcCcC----CCCccc-CCCCCCcEEEcccCcCC
Q 007762          387 -IPRWL--GNLTRLQHIMMPKNHLEG----PIPVEF-CQLDWLQILDISDNNIS  432 (590)
Q Consensus       387 -~~~~~--~~l~~L~~L~L~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~  432 (590)
                       ++..+  ..+++|++|+|++|.+.+    .++..+ .++++|++|++++|.++
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence             22233  224445555555554443    133333 33444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=7.3e-19  Score=160.89  Aligned_cols=164  Identities=22%  Similarity=0.229  Sum_probs=111.3

Q ss_pred             CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEEC
Q 007762          371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHL  449 (590)
Q Consensus       371 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l  449 (590)
                      +++++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            355555555555554444445555566666666655554444445556666666666666654444433 3556666666


Q ss_pred             cCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          450 SKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       450 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      ++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+       .+++|+.|+++.|+++|
T Consensus       108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             CCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            666663 4454547788899999999999997777778889999999999997764       45688999999999999


Q ss_pred             CCccccccCCccc
Q 007762          530 PIPPCFDNTTLHE  542 (590)
Q Consensus       530 ~~p~~~~~l~~~~  542 (590)
                      .+|..+..+....
T Consensus       180 ~ip~~~~~l~~~~  192 (208)
T 2o6s_A          180 VVRNSAGSVAPDS  192 (208)
T ss_dssp             TBBCTTSSBCTTC
T ss_pred             eeeccCccccCCc
Confidence            9999888765543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=6.2e-19  Score=161.38  Aligned_cols=175  Identities=23%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762          323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM  402 (590)
Q Consensus       323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  402 (590)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34555555555544433334444455555555555544333333444555555555555554443344445555555555


Q ss_pred             CCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762          403 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS  482 (590)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  482 (590)
                      ++|.+.+..+..|..+++|++|++++|.++                        .++...+..+++|+.|++++|.+.+ 
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------------------------~~~~~~~~~l~~L~~L~l~~N~~~~-  162 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK------------------------SVPDGVFDRLTSLQYIWLHDNPWDC-  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS------------------------CCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccc------------------------eeCHHHhccCCCccEEEecCCCeec-
Confidence            555554433334444555555555555444                        3333335566677777777775542 


Q ss_pred             ccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                            .+++|++|+++.|++++.+|..++.++.    +...|...+..+
T Consensus       163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~  202 (208)
T 2o6s_A          163 ------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPV  202 (208)
T ss_dssp             ------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred             ------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcc
Confidence                  3456677777777777777776666554    444555444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=2.5e-18  Score=170.69  Aligned_cols=240  Identities=18%  Similarity=0.117  Sum_probs=177.7

Q ss_pred             cEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCC-cccCCCCCCcE-EEc
Q 007762          228 ESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIP-SSFGNMKFLQL-LDV  305 (590)
Q Consensus       228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~l  305 (590)
                      +.++.++++++. +|..+  .+++++|++++|.++ .+|...+..+++|++|++++|.+.+.++ ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            567778877775 34433  358999999999998 7777665569999999999999865555 56788888876 566


Q ss_pred             cCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccC-ccccccCCccccCCC-CCCEEEccCCcc
Q 007762          306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEG-NHFVGEIPQSLSKCF-VLEGLFLNNNSL  383 (590)
Q Consensus       306 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~n~~  383 (590)
                      ..|++. .++...+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus        88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            678888 77777777899999999999999887776776777888888866 455544445666654 688999999999


Q ss_pred             cccCccccCCCCCccEEECCC-CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccc
Q 007762          384 SGMIPRWLGNLTRLQHIMMPK-NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGT  462 (590)
Q Consensus       384 ~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  462 (590)
                      +...+..+ ...+|++|++.+ |.+....+..|..+++|++|++++|+++...+..  +.+|+.|.+.++.-.+.+|.  
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP~--  241 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPT--  241 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCCC--
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCCC--
Confidence            85544444 557899999975 5566444457899999999999999998554433  45677777655544355553  


Q ss_pred             cccCCCCcEEEcCCC
Q 007762          463 FFNYHSLVTLDLSYN  477 (590)
Q Consensus       463 ~~~~~~L~~L~ls~n  477 (590)
                      +..+++|+.++++++
T Consensus       242 l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          242 LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTCCSCCEEECSCH
T ss_pred             chhCcChhhCcCCCC
Confidence            566677777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7e-18  Score=162.59  Aligned_cols=173  Identities=23%  Similarity=0.350  Sum_probs=108.4

Q ss_pred             CccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762          345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL  424 (590)
Q Consensus       345 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  424 (590)
                      .+++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+  ...+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEE
Confidence            344555555555554422 2 24455555555555555553322  5555566666666655543  1235556666666


Q ss_pred             EcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762          425 DISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       425 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      ++++|.+.+. +....+++|+.|++++|.+.+ +  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|+++
T Consensus       118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            6666665532 333345566666666666633 3  237778888888888888886554  788888888888888888


Q ss_pred             CCCcccccCCCCCCEEECcCCccCCCC
Q 007762          505 GEVPVQLCKLNQLQLLDLSNNNLHGPI  531 (590)
Q Consensus       505 ~~~~~~~~~l~~L~~L~l~~n~l~~~~  531 (590)
                      + ++ .+..+++|+.|++++|+++...
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             C-Ch-hhccCCCCCEEECcCCcccCCc
Confidence            4 44 4788888888888888887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.1e-17  Score=174.61  Aligned_cols=194  Identities=24%  Similarity=0.339  Sum_probs=116.1

Q ss_pred             CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762          275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL  354 (590)
Q Consensus       275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  354 (590)
                      +++.|++++|.+++ +|..+  .++|++|++++|.+. .+| .   .+++|++|++++|.+.+ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            78888888888774 66544  267888888888877 666 2   36777777777777766 343 433  6677777


Q ss_pred             cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCC
Q 007762          355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS  434 (590)
Q Consensus       355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  434 (590)
                      ++|.+.+ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+.+ +|. |.  ++|+.|++++|.++ .
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            7766664 333   45666666666666654 333   34566666666666554 443 43  55666666666555 2


Q ss_pred             CCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCC
Q 007762          435 LPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL  514 (590)
Q Consensus       435 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  514 (590)
                      +|. +.. +|                  +...+.|+.|++++|.++ .+|..+..+++|++|++++|++++.+|..+..+
T Consensus       195 lp~-~~~-~L------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          195 LPA-VPV-RN------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhh-HHH-hh------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            222 111 22                  111122377777777776 456656667777777777777776666665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.1e-17  Score=154.04  Aligned_cols=135  Identities=24%  Similarity=0.275  Sum_probs=91.4

Q ss_pred             CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECc
Q 007762          371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS  450 (590)
Q Consensus       371 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  450 (590)
                      +.++.|++++|.+++..+..|..+++|+.|+|++|.+.+..|..|..+++|++|++++|.++                  
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------------   93 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT------------------   93 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC------------------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC------------------
Confidence            45555666666555544445555566666666666655555555555555555555555554                  


Q ss_pred             CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                            .++...|.++++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus        94 ------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           94 ------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             ------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence                  3444446677788888888888887777778888888888888888886666677778888888888888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.8e-17  Score=173.59  Aligned_cols=195  Identities=22%  Similarity=0.332  Sum_probs=132.8

Q ss_pred             EEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcC
Q 007762          328 LALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL  407 (590)
Q Consensus       328 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~  407 (590)
                      +.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|+.|+|++|.+
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            3444444443222  3346667777777766653 23 36667777777777777765433  66777777777777776


Q ss_pred             cCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762          408 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV  487 (590)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  487 (590)
                      .+ ++ .+..+++|+.|++++|.+.+ ++....+++|+.|++++|.+.+ +  ..+..+++|+.|+|++|.+++..|  +
T Consensus       100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~~~~--l  171 (605)
T 1m9s_A          100 KD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP--L  171 (605)
T ss_dssp             CC-CT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCC-C--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC-Ch-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCC-c--hhhcccCCCCEEECcCCcCCCchh--h
Confidence            63 22 56677777777777777764 3444456777777777777743 3  237788889999999998887666  8


Q ss_pred             cccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762          488 DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT  538 (590)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  538 (590)
                      ..+++|+.|+|++|++++ +| .+..+++|+.|+|++|++.+.....+..+
T Consensus       172 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             ccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCcccccccE
Confidence            888899999999998885 33 58888999999999998886544444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=151.79  Aligned_cols=136  Identities=24%  Similarity=0.234  Sum_probs=89.5

Q ss_pred             CCEEEccCCcccccCc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcC
Q 007762          373 LEGLFLNNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSK  451 (590)
Q Consensus       373 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  451 (590)
                      ++.|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++                   
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-------------------   94 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-------------------   94 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-------------------
Confidence            3444555554443322 23444445555555555544443444444444444444444443                   


Q ss_pred             ccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762          452 NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI  531 (590)
Q Consensus       452 n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  531 (590)
                           .++...|..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++....
T Consensus        95 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           95 -----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             -----CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             -----ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence                 344444777888888888888888877888888888999999999888777888888889999999999888654


Q ss_pred             c
Q 007762          532 P  532 (590)
Q Consensus       532 p  532 (590)
                      +
T Consensus       170 ~  170 (220)
T 2v70_A          170 Y  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=7.5e-17  Score=149.56  Aligned_cols=137  Identities=23%  Similarity=0.293  Sum_probs=88.0

Q ss_pred             CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECc
Q 007762          371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS  450 (590)
Q Consensus       371 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  450 (590)
                      ++|++|++++|.+++..+..|..+++|+.|+|++|.+....+..|..+++|++|++++|.++                  
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~------------------  101 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT------------------  101 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC------------------
Confidence            44555555555554444444444555555555555544333334444445555555444443                  


Q ss_pred             CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCC
Q 007762          451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP  530 (590)
Q Consensus       451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (590)
                            .++...|..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus       102 ------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          102 ------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             ------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence                  344444677788888888888888 6677788888888888888888866666788888888888888888765


Q ss_pred             Cc
Q 007762          531 IP  532 (590)
Q Consensus       531 ~p  532 (590)
                      .+
T Consensus       175 c~  176 (229)
T 3e6j_A          175 CR  176 (229)
T ss_dssp             BG
T ss_pred             cc
Confidence            43

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=2.8e-17  Score=151.28  Aligned_cols=145  Identities=24%  Similarity=0.283  Sum_probs=108.3

Q ss_pred             CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCcc
Q 007762          374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNM  453 (590)
Q Consensus       374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  453 (590)
                      +.++++++.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.++                     
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~---------------------   69 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---------------------   69 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence            45566666655 3343333  56666666666666555556666666666666666654                     


Q ss_pred             CCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcc
Q 007762          454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP  533 (590)
Q Consensus       454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  533 (590)
                         .+.+..|.++++|+.|+|++|.++...+..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|.
T Consensus        70 ---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           70 ---ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             ---EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ---CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence               33333488889999999999999977777789999999999999999988889999999999999999999987777


Q ss_pred             ccccCCcccccc
Q 007762          534 CFDNTTLHESYS  545 (590)
Q Consensus       534 ~~~~l~~~~~~~  545 (590)
                      .|..++.+...+
T Consensus       147 ~~~~l~~L~~L~  158 (220)
T 2v9t_B          147 TFSPLRAIQTMH  158 (220)
T ss_dssp             TTTTCTTCCEEE
T ss_pred             HHhCCCCCCEEE
Confidence            787765544333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.1e-17  Score=164.71  Aligned_cols=129  Identities=27%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCcccc-CccccCceeccCccccccCCccccCCCCCCEEEcc
Q 007762          301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  379 (590)
Q Consensus       301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  379 (590)
                      +.++++++.+. .+|..+   .+.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            35555555555 455433   23456666666666555555554 56666666666666665555556666666666666


Q ss_pred             CCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762          380 NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG  433 (590)
Q Consensus       380 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  433 (590)
                      +|+++...+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.++.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            666665555566666667777777766665556666666666777666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.8e-17  Score=157.48  Aligned_cols=170  Identities=21%  Similarity=0.270  Sum_probs=99.0

Q ss_pred             CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762          323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM  402 (590)
Q Consensus       323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  402 (590)
                      ++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEEC
Confidence            3444444444444332  123444555555555555443222  44555555555555555432  22555556666666


Q ss_pred             CCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762          403 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS  482 (590)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  482 (590)
                      ++|.+.+.  ..+..+++|+.|++++|.+++. +....+++|+.|++++|.+.+ ++.  +..+++|+.|++++|.+++ 
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~~-  192 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD-  192 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCCC-
Confidence            66655532  3455556666666666665543 333345566666666666643 332  7778889999999999885 


Q ss_pred             ccccccccCCCCEEECcCCcccCC
Q 007762          483 ISDWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      ++ .+..+++|+.|++++|+++..
T Consensus       193 l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          193 LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             Ch-hhccCCCCCEEECcCCcccCC
Confidence            34 378889999999999998853

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=2.2e-17  Score=156.56  Aligned_cols=171  Identities=18%  Similarity=0.222  Sum_probs=123.1

Q ss_pred             ccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEE
Q 007762          346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD  425 (590)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  425 (590)
                      +.++..++++++.+.+..  .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            455566666666665322  35566777777777777663 33 56677777777777777764333  77777777777


Q ss_pred             cccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762          426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       426 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (590)
                      +++|.+++..+ ... ++|+.|++++|.+++ ++  .+..+++|+.|++++|.+++. + .+..+++|++|++++|++++
T Consensus        92 L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLNG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCTT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            77777775333 222 778888888888743 33  277888999999999998854 3 58888999999999999986


Q ss_pred             CCcccccCCCCCCEEECcCCccCCCC
Q 007762          506 EVPVQLCKLNQLQLLDLSNNNLHGPI  531 (590)
Q Consensus       506 ~~~~~~~~l~~L~~L~l~~n~l~~~~  531 (590)
                      .  ..+..+++|+.|++++|++.+..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCCc
Confidence            5  67888899999999999988653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=3.8e-17  Score=162.82  Aligned_cols=175  Identities=22%  Similarity=0.208  Sum_probs=107.1

Q ss_pred             cEEEccCCcCCCccCccccCccccCceeccCccccccCCcccc-CCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762          326 EYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS-KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK  404 (590)
Q Consensus       326 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  404 (590)
                      +.++++++.+.. +|..+  .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+++..+..|..+++|+.|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            567777777665 33333  24467777777777765555565 677777777777777766666677777777777777


Q ss_pred             CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCcccc---ccCCCCcEEEcCCCcCC
Q 007762          405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTF---FNYHSLVTLDLSYNRLN  480 (590)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~ls~n~l~  480 (590)
                      |.+....+..|..+++|++|++++|.+.+..+..+. +++|+.|++++|.+. .++...+   ..+++|+.|+|++|.++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            777765566677777777777777777655444433 455555666555553 3444433   34555555555555555


Q ss_pred             CCccccccccCC--CCEEECcCCccc
Q 007762          481 GSISDWVDGLSQ--LSHLILGHNNLE  504 (590)
Q Consensus       481 ~~~~~~~~~l~~--L~~L~L~~n~l~  504 (590)
                      +..+..+..++.  ++.|++++|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            444444555544  255555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.5e-16  Score=168.00  Aligned_cols=188  Identities=22%  Similarity=0.294  Sum_probs=106.8

Q ss_pred             CcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceecc
Q 007762          276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLE  355 (590)
Q Consensus       276 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  355 (590)
                      +..+.+..+.+.+..+  +..++.|+.|++++|.+. .++.  +..+++|+.|++++|.+.+..+  +..+++|+.|+++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            4444555555443222  345667777777777776 5543  2346777777777777765443  5666777777777


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCC
Q 007762          356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL  435 (590)
Q Consensus       356 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  435 (590)
                      +|.+.+ ++ .+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            776653 22 466666677777776666642  3456666666666666666643  45566666666666666665443


Q ss_pred             CCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762          436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN  480 (590)
Q Consensus       436 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (590)
                      + ...+++|+.|+|++|.+.+ ++  .+..+++|+.|+|++|.+.
T Consensus       170 ~-l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          170 P-LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             G-GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEE
T ss_pred             h-hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCc
Confidence            3 2234445555555554422 21  1444444445555444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=2.8e-16  Score=144.63  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      +++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            44444444444444443333444455555555555555444444455555555555555555544455555555555555


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      |++|.+.+..|..|..+++|+.|++++|.+.
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5555555444555555555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.6e-16  Score=143.79  Aligned_cols=152  Identities=16%  Similarity=0.261  Sum_probs=83.2

Q ss_pred             ccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEE
Q 007762          346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD  425 (590)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  425 (590)
                      +++|+.|++++|.+. .++ .+..+++|++|++++|.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            444444555444444 222 34444455555555543321  12344444555555555444433344444444444444


Q ss_pred             cccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCc-CCCCccccccccCCCCEEECcCCccc
Q 007762          426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNR-LNGSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       426 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      +++|.++                       +..+.. +..+++|+.|++++|. ++ .++ .+..+++|++|++++|+++
T Consensus       119 Ls~n~i~-----------------------~~~~~~-l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          119 ISHSAHD-----------------------DSILTK-INTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CCSSBCB-----------------------GGGHHH-HTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             ecCCccC-----------------------cHhHHH-HhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            4444443                       323333 6677778888888887 55 344 5777788888888888887


Q ss_pred             CCCcccccCCCCCCEEECcCCccCC
Q 007762          505 GEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       505 ~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      + ++ .+..+++|+.|++++|++.+
T Consensus       173 ~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          173 D-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             C-CT-TGGGCSSCCEEEECBC----
T ss_pred             C-hH-HhccCCCCCEEEeeCcccCC
Confidence            4 33 67778888888888887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2.4e-17  Score=162.12  Aligned_cols=296  Identities=15%  Similarity=0.171  Sum_probs=165.9

Q ss_pred             CCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccC
Q 007762           17 HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMAN   96 (590)
Q Consensus        17 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~   96 (590)
                      .+.+++.|.+++.   +.......+...+++|++|+|++|.+...  ...   -..++.++.+.+..+.+.   ..+|.+
T Consensus        23 ~~~~l~~L~l~g~---i~~~~~~~l~~~l~~L~~LdLs~n~i~~~--~~~---~~~~~~~~~~~~~~~~I~---~~aF~~   91 (329)
T 3sb4_A           23 EANSITHLTLTGK---LNAEDFRHLRDEFPSLKVLDISNAEIKMY--SGK---AGTYPNGKFYIYMANFVP---AYAFSN   91 (329)
T ss_dssp             HHHHCSEEEEEEE---ECHHHHHHHHHSCTTCCEEEEEEEEECCE--EES---SSSSGGGCCEEECTTEEC---TTTTEE
T ss_pred             hhCceeEEEEecc---ccHHHHHHHHHhhccCeEEecCcceeEEe--cCc---cccccccccccccccccC---HHHhcc
Confidence            3566777777754   12222334442267777888877776410  011   111222455555555333   455666


Q ss_pred             --------CCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCC
Q 007762           97 --------MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSP  168 (590)
Q Consensus        97 --------l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~  168 (590)
                              |++|++|++++ .++ .++...|.+|++|+.+++++|.+. .++...|.++.++..+.........      
T Consensus        92 ~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~------  162 (329)
T 3sb4_A           92 VVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYR------  162 (329)
T ss_dssp             EETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHH------
T ss_pred             cccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhh------
Confidence                    77777777777 666 677667777777777777777665 4455556555555544333211000      


Q ss_pred             CCCCCCcccceEeccCCCCCCCcCChhccCCCccc-EEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCC
Q 007762          169 SLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE-YVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS  247 (590)
Q Consensus       169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  247 (590)
                                        .....-...+..+..|+ .+.+....   .++..++...                     ..
T Consensus       163 ------------------~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~---------------------~~  200 (329)
T 3sb4_A          163 ------------------FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG---------------------LQ  200 (329)
T ss_dssp             ------------------TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT---------------------CC
T ss_pred             ------------------ccccccccccccccccceeEEecCCC---cHHHHHhhcc---------------------cC
Confidence                              00011122233344444 33333221   2232222111                     12


Q ss_pred             CCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCc-
Q 007762          248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE-  326 (590)
Q Consensus       248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-  326 (590)
                      ..+++.+.+.++-.. .....+...+++|+++++++|.++......|.+|++|+.+++.+| +. .++...|.++.+|+ 
T Consensus       201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAG  277 (329)
T ss_dssp             GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCE
T ss_pred             ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccE
Confidence            234444555443111 112222233677777777777777555566777777888877776 55 67777777777787 


Q ss_pred             EEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEc
Q 007762          327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL  378 (590)
Q Consensus       327 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  378 (590)
                      .+.+.. .+....+..|.++++|+.+++..+.+....+.+|.+|++|+.++.
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            777776 566666677777888888888777777666677778888877753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=1.1e-15  Score=141.66  Aligned_cols=154  Identities=24%  Similarity=0.228  Sum_probs=110.6

Q ss_pred             CcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762          325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK  404 (590)
Q Consensus       325 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  404 (590)
                      .+.++.+++.+.. +|..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.++...+..|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4556666665553 23322  26677777777777766677777788888888888888766666678888888888888


Q ss_pred             CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762          405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS  484 (590)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  484 (590)
                      |.+.+..+..|..+++|++|++++|.++                        .+|.. +..+++|+.|++++|.+++..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------~lp~~-~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT------------------------ELPRG-IERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------SCCTT-GGGCTTCSEEECCSSCCCCCCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc------------------------ccCcc-cccCCCCCEEECCCCcCCccCH
Confidence            8888666667788888888888888776                        23333 5566777778888777776666


Q ss_pred             ccccccCCCCEEECcCCcccCC
Q 007762          485 DWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       485 ~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      ..|..+++|++|++++|++...
T Consensus       153 ~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTTCTTCCEEECTTSCBCTT
T ss_pred             HHHhCCCCCCEEEeeCCCccCC
Confidence            6677778888888888877744

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=4.7e-16  Score=140.66  Aligned_cols=151  Identities=17%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      +++|+.|++++|.+.. ++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4556666666666653 22 4556667777777776543  223566778888888888888776677788888888888


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCc-CCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN  480 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (590)
                      +++|.+.+..+..+..+++|++|++++|. +.                        .++  .+..+++|+.|++++|.++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------------------~~~--~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT------------------------DIM--PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC------------------------CCG--GGGGCSSCCEEECTTBCCC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc------------------------ccH--hhcCCCCCCEEECCCCCCc
Confidence            88888876667778888888888888886 43                        222  2566677777777777777


Q ss_pred             CCccccccccCCCCEEECcCCccc
Q 007762          481 GSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      +. + .+..+++|++|++++|++.
T Consensus       173 ~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          173 DY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CC-T-TGGGCSSCCEEEECBC---
T ss_pred             Ch-H-HhccCCCCCEEEeeCcccC
Confidence            43 3 5667777778887777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.66  E-value=3e-15  Score=151.01  Aligned_cols=141  Identities=19%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCce
Q 007762          273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL  352 (590)
Q Consensus       273 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  352 (590)
                      +..++.+.+..+... .....+..+..++.+.....    .++...+..+.+|+.+.+..+ +......+|.++.+|+.+
T Consensus       252 ~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          252 CTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             CSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEcCCCcce-eeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            445555555443222 33334455555555544432    223333444555555555432 333333445555555555


Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcE
Q 007762          353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI  423 (590)
Q Consensus       353 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  423 (590)
                      ++..+ +......+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+- . .+..+|.++++|+.
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence            55432 33233345555555555555443 333344455555555555554331 1 12334555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.65  E-value=6.8e-15  Score=148.46  Aligned_cols=314  Identities=16%  Similarity=0.116  Sum_probs=174.8

Q ss_pred             CCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCcccc
Q 007762           65 ILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPL  144 (590)
Q Consensus        65 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l  144 (590)
                      |...+|.++.+|+.+.+..+ ++.....+|.+|++|+.+++.++ ++ .+....+.++++|+.+.+..+-.  .+....|
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~--~i~~~aF  136 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLK--SIGVEAF  136 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCC--EECTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCcee--eecceee
Confidence            55567777777777777643 55455667777777777777654 43 56665677777777666554321  2222334


Q ss_pred             ccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcC
Q 007762          145 FNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN  224 (590)
Q Consensus       145 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l  224 (590)
                      .++..++...                              ...........|..+.+|+.+.+.++. . .++...|.++
T Consensus       137 ~~~~~~~~~~------------------------------~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c  184 (394)
T 4fs7_A          137 KGCDFKEITI------------------------------PEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGC  184 (394)
T ss_dssp             TTCCCSEEEC------------------------------CTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTC
T ss_pred             eccccccccc------------------------------CccccccchhhhcccCCCcEEecCCcc-c-eeccccccCC
Confidence            3333222111                              111111223456777788888886543 2 4556666778


Q ss_pred             CCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEE
Q 007762          225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLD  304 (590)
Q Consensus       225 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  304 (590)
                      .+|+.+.+..+ +......++..+..|+.+.+..+...  +....+. ..+|+.+.+.... +......+..+..++.+.
T Consensus       185 ~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~  259 (394)
T 4fs7_A          185 GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDSF-TELGKSVFYGCTDLESIS  259 (394)
T ss_dssp             TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTTC-CEECSSTTTTCSSCCEEE
T ss_pred             CCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCCc-eecccccccccccceeEE
Confidence            88888777654 33334456667777777766655322  1222222 4567777765432 223344566677777777


Q ss_pred             ccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCccc
Q 007762          305 VTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS  384 (590)
Q Consensus       305 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  384 (590)
                      +..+..  .+....+..+..++.+......+.   ...|..+.+|+.+.+..+ +......+|.+|.+|+.+++.++ ++
T Consensus       260 ~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          260 IQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             ECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             cCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence            765532  344455555666666666544332   234555666666666543 33334455666666666666432 44


Q ss_pred             ccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEccc
Q 007762          385 GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD  428 (590)
Q Consensus       385 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  428 (590)
                      .....+|.+|++|+.+.+..+ +......+|..|++|+.+++..
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            344455666666666666544 3333445566666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.5e-16  Score=156.37  Aligned_cols=220  Identities=13%  Similarity=0.065  Sum_probs=92.7

Q ss_pred             CCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccc----cccCCccccCCCC
Q 007762          297 MKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF----VGEIPQSLSKCFV  372 (590)
Q Consensus       297 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~l~~~~~  372 (590)
                      |++|+.+++.+ .+. .++...|.+|++|+.++++.|.+....+..|..+.++..+.......    .......|.+|..
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            66666666665 554 55655565666666666666665555555555555554444433111    1111223334444


Q ss_pred             CC-EEEccCCcc-cccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEEC
Q 007762          373 LE-GLFLNNNSL-SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHL  449 (590)
Q Consensus       373 L~-~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l  449 (590)
                      |+ .+.+..... .......-....+++.+.+.++-...........+++|+.+++++|.++.+....|. +.+|+++++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            44 222222110 000000001122333333332211000000001244555555555444433333333 334444444


Q ss_pred             cCccCCCCCCccccccCCCCc-EEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEE
Q 007762          450 SKNMLHGQLKRGTFFNYHSLV-TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD  521 (590)
Q Consensus       450 ~~n~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  521 (590)
                      .+| + ..++..+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++|+++...+..|.++++|+.++
T Consensus       258 ~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          258 PHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             Ccc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            443 2 244444455555555 555544 44433344455555555555555555433344455555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=3.5e-18  Score=179.42  Aligned_cols=201  Identities=21%  Similarity=0.153  Sum_probs=89.0

Q ss_pred             CCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCc-------------CCCccCccccCccccCcee-ccCccccc
Q 007762          296 NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS-------------LEGHMFSRNFNLTNLKWLQ-LEGNHFVG  361 (590)
Q Consensus       296 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~~~~~~  361 (590)
                      .++.|+.|++++|.+. .+|..+.. +++|+.|++++|.             ..+..+..+..+++|+.|+ ++.+.+. 
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             cCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            3445555555555554 45544432 4455555544332             2233444555556666665 4443321 


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC-CC
Q 007762          362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC-FH  440 (590)
Q Consensus       362 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~  440 (590)
                                .|+.+.+++|.++...+      ..|+.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|.. ..
T Consensus       424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                      12222333333332111      124555555555543 333 555555555555555544 11211 11


Q ss_pred             CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc-cccccccCCCCEEECcCCcccCCCcc---cccCCCC
Q 007762          441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGEVPV---QLCKLNQ  516 (590)
Q Consensus       441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~  516 (590)
                      +++|+.|++++|.+++ +|  .+..+++|+.|+|++|.+++.. |..+..+++|++|++++|++++..|.   .+..+|+
T Consensus       485 l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             CCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence            2233333333333322 33  2445555555555555555443 55555555555555555555543321   1223455


Q ss_pred             CCEEE
Q 007762          517 LQLLD  521 (590)
Q Consensus       517 L~~L~  521 (590)
                      |+.|+
T Consensus       562 L~~L~  566 (567)
T 1dce_A          562 VSSIL  566 (567)
T ss_dssp             CSEEE
T ss_pred             cCccC
Confidence            55554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=3.9e-16  Score=147.89  Aligned_cols=167  Identities=19%  Similarity=0.255  Sum_probs=96.3

Q ss_pred             CcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762          325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK  404 (590)
Q Consensus       325 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  404 (590)
                      +..++++.+.+.+..  .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++..+  +..+++|+.|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            344444444444322  23445555555555555542 22 34455555555555555553332  55555666666666


Q ss_pred             CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762          405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS  484 (590)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  484 (590)
                      |.+.+ ++. +.. ++|++|++++|.+++. +....+++|+.|++++|.++ .++  .+..+++|+.|++++|.+++.  
T Consensus        95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           95 NRLKN-LNG-IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SCCSC-CTT-CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CccCC-cCc-ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCcch--
Confidence            65553 222 112 5566666666665532 33334556666666666663 333  377788888888888888865  


Q ss_pred             ccccccCCCCEEECcCCcccCC
Q 007762          485 DWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       485 ~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      ..+..+++|++|++++|+++..
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HHhccCCCCCEEeCCCCcccCC
Confidence            5677888888888888888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.7e-15  Score=133.28  Aligned_cols=137  Identities=23%  Similarity=0.189  Sum_probs=93.2

Q ss_pred             CCCCEEEccCCccc-ccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEEC
Q 007762          371 FVLEGLFLNNNSLS-GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHL  449 (590)
Q Consensus       371 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  449 (590)
                      ++|+.|++++|.++ +.++..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.                 
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~-----------------   84 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF-----------------   84 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC-----------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc-----------------
Confidence            45666666666655 34454555555666666666555533  44555555555555555554                 


Q ss_pred             cCccCCCCCCccccccCCCCcEEEcCCCcCCCCc-cccccccCCCCEEECcCCcccCCCc---ccccCCCCCCEEECcCC
Q 007762          450 SKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSNN  525 (590)
Q Consensus       450 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n  525 (590)
                            +.++.. +..+++|+.|++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|
T Consensus        85 ------~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           85 ------GGLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ------SCCCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             ------hHHHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence                  333333 666889999999999998643 2678889999999999999985544   47889999999999999


Q ss_pred             ccCCCCccc
Q 007762          526 NLHGPIPPC  534 (590)
Q Consensus       526 ~l~~~~p~~  534 (590)
                      ++. .+|..
T Consensus       158 ~~~-~~~~~  165 (168)
T 2ell_A          158 EDQ-EAPDS  165 (168)
T ss_dssp             TSC-BCCSS
T ss_pred             Chh-hcccc
Confidence            987 45644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=1.6e-14  Score=144.88  Aligned_cols=265  Identities=11%  Similarity=0.078  Sum_probs=137.6

Q ss_pred             cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcE
Q 007762          223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL  302 (590)
Q Consensus       223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  302 (590)
                      .+..++.+.+.+. +......+|..+ +|+.+.+..+ ++ .++...+.. .+|+.+.+.. .++......|.+|++|+.
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            3455555555442 333334445543 5666666654 43 344433332 3577777664 344344556777777777


Q ss_pred             EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCc
Q 007762          303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS  382 (590)
Q Consensus       303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  382 (590)
                      +++.+|.+. .++...|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.+ .+|+.+.+. +.
T Consensus       185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            777777766 66666664 567777776633 54444555666666666666543 33233344444 455555552 23


Q ss_pred             ccccCccccCCCCCccEEECCCCcCc-----CCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCC
Q 007762          383 LSGMIPRWLGNLTRLQHIMMPKNHLE-----GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ  457 (590)
Q Consensus       383 ~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  457 (590)
                      ++.....+|.+|++|+.+++.++.+.     .....+|..|++|+.+++.+ .+                        ..
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i------------------------~~  313 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI------------------------RI  313 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC------------------------CE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce------------------------EE
Confidence            33334445555555555555544332     12233444444444444432 12                        23


Q ss_pred             CCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC-CCCEEECcCCc
Q 007762          458 LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNN  526 (590)
Q Consensus       458 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~  526 (590)
                      ++..+|.+|++|+.+++..+ ++.....+|.++ +|+.+++.+|.+....+..|..++ +++.|.+-.+.
T Consensus       314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            44444555556666665433 443444555555 566666665555544444454443 45555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=5.8e-15  Score=132.69  Aligned_cols=132  Identities=23%  Similarity=0.268  Sum_probs=90.4

Q ss_pred             CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCc
Q 007762          374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN  452 (590)
Q Consensus       374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  452 (590)
                      +.++++++.++ .+|..+.  .++++|++++|.+.+..+. .|..+++|++|++++|.+++.                  
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------   69 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI------------------   69 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB------------------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc------------------
Confidence            55666666664 3444333  2566666666666544432 255555566666655555432                  


Q ss_pred             cCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                           .+ ..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus        70 -----~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           70 -----EP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             -----CT-TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             -----CH-hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence                 23 337777888888888888887777778888888888888888887778888888888888888888887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=6.1e-14  Score=140.67  Aligned_cols=252  Identities=12%  Similarity=0.145  Sum_probs=122.2

Q ss_pred             hhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcC
Q 007762          194 KFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVL  273 (590)
Q Consensus       194 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  273 (590)
                      .+|..+ +|+.+.+..+ +. .++...|.++ +|+.+.+.+ .+......+|..|++|+.+++.+|.++ .++...+. +
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~  202 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y  202 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T
T ss_pred             hhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e
Confidence            344443 5666666554 32 3444444443 466666654 344444455666666666666666555 44444444 4


Q ss_pred             CCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCcee
Q 007762          274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQ  353 (590)
Q Consensus       274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  353 (590)
                      ++|+.+.+..+ ++......|.++++|+.+++..+ +. .++...|.+ .+|+.+.+. +.+.......|.++++|+.+.
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence            56666666533 33344445555666666665543 33 444444443 455555553 223333344455555555555


Q ss_pred             ccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762          354 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG  433 (590)
Q Consensus       354 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  433 (590)
                      +.++.+..                   +........+|.+|++|+.+.+.+ .+......+|..|++|+.+.+..+ ++.
T Consensus       278 l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          278 TYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             EESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             eCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            54443320                   000022333445555555555542 233333444555555555555332 333


Q ss_pred             CCCCCCCCCcccEEECcCccCCCCCCccccccCC-CCcEEEcCCCcC
Q 007762          434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYH-SLVTLDLSYNRL  479 (590)
Q Consensus       434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~ls~n~l  479 (590)
                      +....|...+|+.+++.+|.. ..++...|.+++ +++.|.+..+.+
T Consensus       337 I~~~aF~~~~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          337 INFSAFNNTGIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTSSSSSCCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EcHHhCCCCCCCEEEEcCCCC-cccccccccCCCCCccEEEeCHHHH
Confidence            334444433555555555544 244444466663 567777766544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.8e-15  Score=127.44  Aligned_cols=127  Identities=17%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             CccEEECCCCcCc-CCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762          396 RLQHIMMPKNHLE-GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL  474 (590)
Q Consensus       396 ~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  474 (590)
                      +|+.|++++|.+. +.+|..+..+++|++|++++|.+++. +....+++|++|++++|.+.+.++.. +..+++|+.|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEEEC
Confidence            3444444444443 23333444444444444444444432 22222334444444444443333332 566788888888


Q ss_pred             CCCcCCCC-ccccccccCCCCEEECcCCcccCCCc---ccccCCCCCCEEECcC
Q 007762          475 SYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSN  524 (590)
Q Consensus       475 s~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~  524 (590)
                      ++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88888753 34677888888888888888886554   4678888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=3.4e-17  Score=171.92  Aligned_cols=180  Identities=22%  Similarity=0.218  Sum_probs=129.4

Q ss_pred             ccccCceeccCccccccCCccccCCCCCCEEEccCCc-------------ccccCccccCCCCCccEEE-CCCCcCcCCC
Q 007762          346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-------------LSGMIPRWLGNLTRLQHIM-MPKNHLEGPI  411 (590)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-L~~n~~~~~~  411 (590)
                      +++|+.|++++|.+. .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.. +
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L  425 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-L  425 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-H
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-h
Confidence            444555555555544 444445555555555554432             3344555566666666666 44432211 0


Q ss_pred             Cc------ccC--CCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q 007762          412 PV------EFC--QLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI  483 (590)
Q Consensus       412 ~~------~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  483 (590)
                      +.      .+.  ....|+.|++++|.+++ +|....+++|+.|++++|.++ .+|.. +..+++|+.|+|++|.+++ +
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~-l  501 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN-V  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-C
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-C
Confidence            00      000  01258999999999996 455556889999999999996 78775 9999999999999999996 6


Q ss_pred             cccccccCCCCEEECcCCcccCCC-cccccCCCCCCEEECcCCccCCCCc
Q 007762          484 SDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      | .+..+++|++|+|++|++++.. |..+..+++|+.|++++|++++.+|
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            6 7999999999999999999776 9999999999999999999997655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=9.1e-15  Score=131.40  Aligned_cols=129  Identities=26%  Similarity=0.374  Sum_probs=102.1

Q ss_pred             cEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCC
Q 007762          422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN  501 (590)
Q Consensus       422 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (590)
                      +.++++++.++. +|..+ ..++++|++++|.+.+..+...+..+++|+.|++++|.+++..|..|.++++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSS-CCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCc-CccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            456666666643 33222 2366777777777644333345888999999999999999888999999999999999999


Q ss_pred             cccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCCCC
Q 007762          502 NLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNK  552 (590)
Q Consensus       502 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~  552 (590)
                      ++++..+..|..+++|+.|++++|++++.+|..|..++.+...+...++..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999888888999999999999999999999999988876666666666544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=5.4e-15  Score=129.98  Aligned_cols=138  Identities=22%  Similarity=0.168  Sum_probs=114.3

Q ss_pred             ccccCceeccCcccc-ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762          346 LTNLKWLQLEGNHFV-GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL  424 (590)
Q Consensus       346 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  424 (590)
                      .++|++|++++|.+. +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            478999999999997 67788889999999999999999866  788999999999999999997788888889999999


Q ss_pred             EcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc---ccccccCCCCEEECcCC
Q 007762          425 DISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS---DWVDGLSQLSHLILGHN  501 (590)
Q Consensus       425 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~L~~n  501 (590)
                      ++++|.+++..                       ....+..+++|+.|++++|.+++..+   ..+..+++|++|++++|
T Consensus       101 ~Ls~N~l~~~~-----------------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          101 NLSGNKLKDIS-----------------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ECBSSSCCSSG-----------------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             eccCCccCcch-----------------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            99999887321                       11226677888888888888886554   47888888999999888


Q ss_pred             cccCCCcc
Q 007762          502 NLEGEVPV  509 (590)
Q Consensus       502 ~l~~~~~~  509 (590)
                      .+. .+|.
T Consensus       158 ~~~-~~~~  164 (168)
T 2ell_A          158 EDQ-EAPD  164 (168)
T ss_dssp             TSC-BCCS
T ss_pred             Chh-hccc
Confidence            887 4444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=129.42  Aligned_cols=128  Identities=24%  Similarity=0.228  Sum_probs=104.8

Q ss_pred             cEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCC
Q 007762          398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN  477 (590)
Q Consensus       398 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n  477 (590)
                      +.++++++.+. .+|..+.  ++|+.|++++|.++........+++|+.|++++|.++ .++...|.++++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCC
Confidence            57889999887 4565543  5899999999999844433334788999999999995 566566889999999999999


Q ss_pred             cCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       478 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      .+++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9998888889999999999999999986666678889999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=3.6e-14  Score=125.87  Aligned_cols=133  Identities=26%  Similarity=0.279  Sum_probs=91.2

Q ss_pred             CCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCc
Q 007762          373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN  452 (590)
Q Consensus       373 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  452 (590)
                      .+.++++++.++. +|..+  .++|++|++++|.+.+..+..|..+++|++|++++|.++                    
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------   65 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--------------------   65 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------------------
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--------------------
Confidence            3455555555542 22222  245666666666655444444555556666666555554                    


Q ss_pred             cCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                          .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus        66 ----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           66 ----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ----EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence                3444446778889999999999987777778889999999999999986655567889999999999999987655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=3.5e-14  Score=127.51  Aligned_cols=108  Identities=28%  Similarity=0.332  Sum_probs=72.0

Q ss_pred             CccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762          396 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL  474 (590)
Q Consensus       396 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  474 (590)
                      +|++|++++|.+. .+|..|..+++|++|++++|.+++..+..+. +++|++|++++|.++ .++...|..+++|+.|+|
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEEC
Confidence            4555555555554 3344455555555555555555544443332 445555555555553 444445888999999999


Q ss_pred             CCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762          475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (590)
                      ++|.++...+..|..+++|++|++++|++..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9999997777789999999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=1.4e-15  Score=164.74  Aligned_cols=177  Identities=22%  Similarity=0.230  Sum_probs=85.2

Q ss_pred             CCCcEEEccCceecccCCcccCCCCCCcEEEccCccccc--------ccchhhhcCCCCCcEEEccCCcCCCccCccccC
Q 007762          274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG--------EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFN  345 (590)
Q Consensus       274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  345 (590)
                      +.++.|++..+.+.. .+..+     ++.++++.+.+.+        .++...+..++.|+.|++++|.+.. ++..+..
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGG
T ss_pred             CccceEEeeCCCCCc-chhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcC
Confidence            467777777777663 33332     3333333333221        1223334456677777777777663 4444556


Q ss_pred             ccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEE
Q 007762          346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD  425 (590)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  425 (590)
                      +++|++|++++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+. .+|..|..+++|++|+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            677777777777766 56666667777777777777766 55666667777777777777665 4566666777777777


Q ss_pred             cccCcCCCCCCCCCCCC--cccEEECcCccCCCCCCc
Q 007762          426 ISDNNISGSLPSCFHPL--SIEHVHLSKNMLHGQLKR  460 (590)
Q Consensus       426 l~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~  460 (590)
                      |++|.+++.+|..+...  .+..+++++|.+.+.+|.
T Consensus       323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            77777665555444321  112344555555544443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.5e-14  Score=124.27  Aligned_cols=128  Identities=21%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             CCCCEEEccCCccc-ccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEE
Q 007762          371 FVLEGLFLNNNSLS-GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVH  448 (590)
Q Consensus       371 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~  448 (590)
                      ++++.|++++|.++ +.++..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+. +++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444455544444 33444444455555555555554432  3444555555555555555443333332 45555555


Q ss_pred             CcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc---ccccccCCCCEEECcC
Q 007762          449 LSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS---DWVDGLSQLSHLILGH  500 (590)
Q Consensus       449 l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~L~~  500 (590)
                      +++|.+.+......+..+++|+.|++++|.+++..+   ..+..+++|++|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            555555331111337888999999999999986655   5788899999999863

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=2.3e-15  Score=163.13  Aligned_cols=220  Identities=22%  Similarity=0.213  Sum_probs=122.9

Q ss_pred             CCcccEEEccCCcCCCCCchhhhhcCCCC-----cEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCC
Q 007762          248 HKRLRLLDISNNNFRGHIPVEIGDVLPGL-----FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGC  322 (590)
Q Consensus       248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L-----~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  322 (590)
                      .+.++.|++.++.+. ..+..+.. ...|     ..+++..|.+. ..+..+..++.|+.|++++|.+. .++..++ .+
T Consensus       172 ~~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l  246 (727)
T 4b8c_D          172 TPLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KY  246 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GC
T ss_pred             CCccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CC
Confidence            356888999888876 34433322 2222     23333334444 56778899999999999999998 8888887 59


Q ss_pred             CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762          323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM  402 (590)
Q Consensus       323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  402 (590)
                      ++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..|..+++|+.|+|
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEEC
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeC
Confidence            99999999999998 67888999999999999999999 77988999999999999999997 67878999999999999


Q ss_pred             CCCcCcCCCCcccCCCCC-CcEEEcccCcCCCCCCCCCCCCcccEEECcCcc----CCCCCCc---cccccCCCCcEEEc
Q 007762          403 PKNHLEGPIPVEFCQLDW-LQILDISDNNISGSLPSCFHPLSIEHVHLSKNM----LHGQLKR---GTFFNYHSLVTLDL  474 (590)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~----~~~~~~~---~~~~~~~~L~~L~l  474 (590)
                      ++|.+.+.+|..+..+.. +..+++++|.+++.+|.     .|..|+++.|.    ..+.++.   ..+..+..+....+
T Consensus       324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  398 (727)
T 4b8c_D          324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL  398 (727)
T ss_dssp             TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----C--------------------------------------
T ss_pred             CCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-----ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence            999999888877654422 23478999999877664     46677777661    1122221   11344555566667


Q ss_pred             CCCcCC
Q 007762          475 SYNRLN  480 (590)
Q Consensus       475 s~n~l~  480 (590)
                      ++|-+.
T Consensus       399 s~Nil~  404 (727)
T 4b8c_D          399 SYNTLC  404 (727)
T ss_dssp             ---CCC
T ss_pred             eccccc
Confidence            777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=7.3e-14  Score=123.63  Aligned_cols=106  Identities=21%  Similarity=0.241  Sum_probs=73.3

Q ss_pred             CCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccc--cccccCCCCEEE
Q 007762          420 WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD--WVDGLSQLSHLI  497 (590)
Q Consensus       420 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~  497 (590)
                      +|++|++++|.+++. +....+++|++|++++|.++ .++...+..+++|+.|++++|.++ .+|.  .+..+++|++|+
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            444444444444432 22223445555555555553 455554678899999999999997 4554  788899999999


Q ss_pred             CcCCcccCCCccc----ccCCCCCCEEECcCCccCC
Q 007762          498 LGHNNLEGEVPVQ----LCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       498 L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~  529 (590)
                      +++|+++ .+|..    +..+++|+.||+++|++..
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999998 55654    8889999999999998763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.48  E-value=4.8e-12  Score=127.53  Aligned_cols=102  Identities=12%  Similarity=0.141  Sum_probs=58.5

Q ss_pred             CCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccc---ccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762           47 SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND---LRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT  123 (590)
Q Consensus        47 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~  123 (590)
                      .|+.+.+..+ ++    .|...+|.+|.+|+.+.+..+.   ++.....+|.+|.+|+.+.+..+ ++ .+....+..+.
T Consensus        65 ~L~sI~iP~s-vt----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~  137 (394)
T 4gt6_A           65 VLTSVQIPDT-VT----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCE  137 (394)
T ss_dssp             CCCEEEECTT-CC----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCT
T ss_pred             cCEEEEECCC-ee----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhc
Confidence            3666666543 22    3555666666667766666542   44344556666777776666544 33 45555666777


Q ss_pred             CCcEEECcCCccccccCccccccCCCccEEEccC
Q 007762          124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKN  157 (590)
Q Consensus       124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~  157 (590)
                      +|+.+.+..+..  .++...+..+..|+.+.+..
T Consensus       138 ~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          138 ELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TCCEEECCTTCC--EECTTTTTTCTTCCEEECCT
T ss_pred             ccccccccceee--eecccceecccccccccccc
Confidence            777777654321  33445566666666665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=7.4e-13  Score=117.31  Aligned_cols=128  Identities=23%  Similarity=0.220  Sum_probs=60.5

Q ss_pred             cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccC
Q 007762          301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  380 (590)
Q Consensus       301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  380 (590)
                      +.++++++.+. .+|...   .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            34444444444 444322   23455555555555443333444445555555555554433333444455555555555


Q ss_pred             CcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762          381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       381 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      |.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            5555444444444555555555555554333333444555555555555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.43  E-value=1.4e-11  Score=124.10  Aligned_cols=133  Identities=14%  Similarity=0.159  Sum_probs=68.0

Q ss_pred             CccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCc
Q 007762          364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS  443 (590)
Q Consensus       364 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  443 (590)
                      ..+|.+|..|+.+.+.+.-. .....+|.+++.|+.+.+.. .+......+|..+.+|+.+++..+ +            
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v------------  322 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I------------  322 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C------------
T ss_pred             cceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c------------
Confidence            34555566666666544322 23344555566666666542 233233445555555555555432 2            


Q ss_pred             ccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECc
Q 007762          444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS  523 (590)
Q Consensus       444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  523 (590)
                                  ..+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++....   ..+..+.+|+.+.+.
T Consensus       323 ------------~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          323 ------------TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA  386 (394)
T ss_dssp             ------------CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred             ------------cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence                        2455556777777777777543 554555667777777777777665431   345566667776665


Q ss_pred             CCcc
Q 007762          524 NNNL  527 (590)
Q Consensus       524 ~n~l  527 (590)
                      .+.+
T Consensus       387 ~~~~  390 (394)
T 4gt6_A          387 PGSI  390 (394)
T ss_dssp             ----
T ss_pred             CCCE
Confidence            5543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=1.4e-15  Score=137.66  Aligned_cols=132  Identities=23%  Similarity=0.295  Sum_probs=86.1

Q ss_pred             ccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCC
Q 007762          390 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHS  468 (590)
Q Consensus       390 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~  468 (590)
                      .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++. +|..+. +++|+.|++++|.+++ ++  .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS--GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC--ccccCCC
Confidence            45555666666666666553 34 55556666666666666652 232222 3556666666666633 43  2777888


Q ss_pred             CcEEEcCCCcCCCCcc-ccccccCCCCEEECcCCcccCCCccc----------ccCCCCCCEEECcCCccCC
Q 007762          469 LVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEVPVQ----------LCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       469 L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~  529 (590)
                      |+.|++++|.+++..+ ..+..+++|++|++++|++++..|..          +..+++|+.||  +|+++.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            8888888888885332 46778888888888888887665542          77888888886  777763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=4.1e-13  Score=118.78  Aligned_cols=131  Identities=18%  Similarity=0.171  Sum_probs=80.2

Q ss_pred             cCCCCCCEEEccCCcccccCccccCCC-CCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC-CCCCccc
Q 007762          368 SKCFVLEGLFLNNNSLSGMIPRWLGNL-TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC-FHPLSIE  445 (590)
Q Consensus       368 ~~~~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~  445 (590)
                      ..+.+|+.|++++|.++. ++. +..+ ++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+.. ..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            344555555555555542 222 2222 2555555555555532  34555555666666666555443333 2355666


Q ss_pred             EEECcCccCCCCCCc-cccccCCCCcEEEcCCCcCCCCcccc----ccccCCCCEEECcCCccc
Q 007762          446 HVHLSKNMLHGQLKR-GTFFNYHSLVTLDLSYNRLNGSISDW----VDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       446 ~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~  504 (590)
                      +|++++|.+ +.++. ..+..+++|+.|++++|.++ .+|..    +..+++|++|++++|...
T Consensus        92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666665 34554 23778899999999999998 45553    888999999999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=3.4e-12  Score=111.90  Aligned_cols=108  Identities=26%  Similarity=0.318  Sum_probs=81.1

Q ss_pred             cEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCC
Q 007762          422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN  501 (590)
Q Consensus       422 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (590)
                      +.+++++|.++.. |..+ ..++++|++++|.++ .+++..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~i-p~~~-~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASV-PTGI-PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcc-CccC-CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4555555555532 2222 256666666666664 344444888899999999999999877778899999999999999


Q ss_pred             cccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762          502 NLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP  532 (590)
Q Consensus       502 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  532 (590)
                      ++++..+..|..+++|+.|++++|++....+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997666678999999999999999986543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=7.5e-12  Score=110.07  Aligned_cols=106  Identities=23%  Similarity=0.323  Sum_probs=77.7

Q ss_pred             cEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCC
Q 007762          422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN  501 (590)
Q Consensus       422 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (590)
                      +.++++++.+.. +|..+ +.+|+.|++++|.+. .+++..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~~-iP~~~-~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGI-PTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCc-cCCCc-CCCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            455555555542 22222 255666666666664 343344888899999999999999776677888999999999999


Q ss_pred             cccCCCcccccCCCCCCEEECcCCccCCC
Q 007762          502 NLEGEVPVQLCKLNQLQLLDLSNNNLHGP  530 (590)
Q Consensus       502 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (590)
                      ++++..+..|..+++|+.|++++|++...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99966555688999999999999999853

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=9.1e-15  Score=132.25  Aligned_cols=152  Identities=22%  Similarity=0.199  Sum_probs=99.3

Q ss_pred             cccCceeccCccccccCCc------cccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCC
Q 007762          347 TNLKWLQLEGNHFVGEIPQ------SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW  420 (590)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  420 (590)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+. .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3444444444444444333      55666667777777776664 34 5666677777777777666 45555555667


Q ss_pred             CcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCc-cccccCCCCcEEEcCCCcCCCCccc----------cccc
Q 007762          421 LQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKR-GTFFNYHSLVTLDLSYNRLNGSISD----------WVDG  489 (590)
Q Consensus       421 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~----------~~~~  489 (590)
                      |++|++++|.+++ ++....+++|+.|++++|.+. .++. ..+..+++|+.|++++|.+++..|.          .+..
T Consensus        95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CCccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            7777777777764 233333567777777777774 3332 3478889999999999999766554          3788


Q ss_pred             cCCCCEEECcCCcccC
Q 007762          490 LSQLSHLILGHNNLEG  505 (590)
Q Consensus       490 l~~L~~L~L~~n~l~~  505 (590)
                      +++|++||  ++.++.
T Consensus       173 l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          173 LPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CSSCSEEC--CGGGTT
T ss_pred             CCCcEEEC--CcccCH
Confidence            99999997  777764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=2e-11  Score=106.95  Aligned_cols=107  Identities=25%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             CCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCc
Q 007762          373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN  452 (590)
Q Consensus       373 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  452 (590)
                      .+.+++++|.++. +|..+.  ++|+.|+|++|.+.+..+..|..+++|++|++++|.++                    
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--------------------   67 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--------------------   67 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------------------
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--------------------
Confidence            3556666666552 333332  56666666666666555556666666666666666655                    


Q ss_pred             cCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCC
Q 007762          453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                          .++...|..+++|+.|+|++|.+++..+..|..+++|++|+|++|+++..
T Consensus        68 ----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           68 ----VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ----ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                34444466778888888888888876666788888888888888888744

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.9e-11  Score=107.43  Aligned_cols=105  Identities=26%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCcc
Q 007762          374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNM  453 (590)
Q Consensus       374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  453 (590)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+.+..|..|..+++|++|++++|.++                     
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------------   70 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT---------------------   70 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---------------------
Confidence            45666666664 3444333  56666777776666655666666666666666666665                     


Q ss_pred             CCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762          454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (590)
                         .++...|..+++|+.|+|++|.+++..+..|..+++|++|++++|++..
T Consensus        71 ---~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           71 ---AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ---ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence               3444446677788888888888886666667888888888888888873

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=6.2e-10  Score=111.52  Aligned_cols=317  Identities=11%  Similarity=0.054  Sum_probs=196.0

Q ss_pred             CCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcc
Q 007762           14 GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWC   93 (590)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~   93 (590)
                      .|....+|+.+.+...    -..+.+..+.+|.+|+.++|..+ ++    .+...+|.++ +|+.+.+..+ +......+
T Consensus        41 ~~~~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~-v~----~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a  109 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST-VT----SIGDGAFADT-KLQSYTGMER-VKKFGDYV  109 (379)
T ss_dssp             TGGGGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT-CC----EECTTTTTTC-CCCEEEECTT-CCEECTTT
T ss_pred             ccccccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc-ce----EechhhhcCC-CCceEECCce-eeEeccce
Confidence            4667778888888743    25566666668899999999765 33    4777888887 6888887654 44345566


Q ss_pred             ccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCC
Q 007762           94 MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAP  173 (590)
Q Consensus        94 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  173 (590)
                      |..+ +|+.+.+.++. + .+....+.++ +|+.+.+..+- . .+....+..+..++.+.+............      
T Consensus       110 F~~~-~L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~v-~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~------  177 (379)
T 4h09_A          110 FQGT-DLDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKSV-T-TIKDGIGYKAENLEKIEVSSNNKNYVAENY------  177 (379)
T ss_dssp             TTTC-CCSEEECCTTC-C-EECTTTTTTC-CCCEEEECTTC-C-EECSCTTTTCTTCCEEEECTTCSSEEEETT------
T ss_pred             eccC-CcccccCCCcc-c-cccccccccc-eeeeeecccee-e-ccccchhcccccccccccccccceeecccc------
Confidence            7665 79999887653 3 4555456554 56666554432 2 344556778888888776554322111000      


Q ss_pred             CcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccE
Q 007762          174 NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRL  253 (590)
Q Consensus       174 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  253 (590)
                                ............+.....+..+.+.....  .+....+..+.+|+.+.+..+ +......++..+..|+.
T Consensus       178 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~  244 (379)
T 4h09_A          178 ----------VLYNKNKTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDE  244 (379)
T ss_dssp             ----------EEEETTSSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCE
T ss_pred             ----------eecccccceecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceE
Confidence                      00000011112233344555555544321  222333456777777777543 33333455677778888


Q ss_pred             EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCC
Q 007762          254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN  333 (590)
Q Consensus       254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  333 (590)
                      +.+..+ ++ .+....+..+.+|+.+.+..+ ++......|..|++|+.+.+.++.+. .++...|.+|.+|+.+.+..+
T Consensus       245 i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          245 IAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             EEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT
T ss_pred             EEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc
Confidence            888665 43 444445555778888887644 33344556788888888888877776 778888888888888888754


Q ss_pred             cCCCccCccccCccccCceeccCccccccCCccccCCCC
Q 007762          334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFV  372 (590)
Q Consensus       334 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  372 (590)
                       +......+|.++.+|+.+.+..+ +......+|.+|..
T Consensus       321 -l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          321 -LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             -CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             -ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence             55555677888888888888654 44344566766643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.25  E-value=9e-10  Score=110.30  Aligned_cols=303  Identities=11%  Similarity=0.098  Sum_probs=204.0

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT  123 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~  123 (590)
                      ...+|+.+.+...- +    +|...+|.+|.+|+.+++..+ ++.....+|.++ +|+.+.+..+ ++ .+....+..+ 
T Consensus        44 ~~~~i~~v~ip~~v-t----~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-  113 (379)
T 4h09_A           44 DRDRISEVRVNSGI-T----SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-  113 (379)
T ss_dssp             GGGGCSEEEECTTE-E----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-
T ss_pred             cccCCEEEEeCCCc-c----ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-
Confidence            55789999997653 2    577899999999999999865 665667888887 6888887754 44 6777677765 


Q ss_pred             CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762          124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE  203 (590)
Q Consensus       124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  203 (590)
                      +|+.+.+..+-.  .+....+.++ +++.+.+..+                  ++.+           ....+..+..++
T Consensus       114 ~L~~i~lp~~~~--~i~~~~F~~~-~l~~~~~~~~------------------v~~i-----------~~~~f~~~~~l~  161 (379)
T 4h09_A          114 DLDDFEFPGATT--EIGNYIFYNS-SVKRIVIPKS------------------VTTI-----------KDGIGYKAENLE  161 (379)
T ss_dssp             CCSEEECCTTCC--EECTTTTTTC-CCCEEEECTT------------------CCEE-----------CSCTTTTCTTCC
T ss_pred             CcccccCCCccc--cccccccccc-eeeeeeccce------------------eecc-----------ccchhccccccc
Confidence            899999976532  2343455554 4555544332                  1111           112233444555


Q ss_pred             EEEcCCCcCcc------------ccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhh
Q 007762          204 YVDLSHMKMNG------------EFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD  271 (590)
Q Consensus       204 ~L~ls~~~~~~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  271 (590)
                      .+.+.......            .... .+..+..+..+.+.... .......+..+..|+.+.+..+ +. .+....+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~  237 (379)
T 4h09_A          162 KIEVSSNNKNYVAENYVLYNKNKTILE-SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFY  237 (379)
T ss_dssp             EEEECTTCSSEEEETTEEEETTSSEEE-ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTT
T ss_pred             ccccccccceeecccceecccccceec-cccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEcccccc
Confidence            55444332110            0011 12344556666554432 2223455677888999998765 33 34444444


Q ss_pred             cCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCc
Q 007762          272 VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKW  351 (590)
Q Consensus       272 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  351 (590)
                      .+..|+.+.+..+ ++......+..+..|+.+.+..+ +. .++...+.+|.+|+.+.+..+.+.......|.++.+|+.
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            5889999999766 44455667888999999999654 54 777888888999999999988888777888999999999


Q ss_pred             eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCc
Q 007762          352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL  397 (590)
Q Consensus       352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L  397 (590)
                      +.+..+ +......+|.+|.+|+.+.+..+ ++.....+|.++..+
T Consensus       315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             EEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            999754 55455678999999999999654 555556678777543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=8.8e-13  Score=130.96  Aligned_cols=66  Identities=23%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             ccCCCCcEEEcCCCcCCCC----ccccccccCCCCEEECcCCcccCC----CcccccCCCCCCEEECcCCccCC
Q 007762          464 FNYHSLVTLDLSYNRLNGS----ISDWVDGLSQLSHLILGHNNLEGE----VPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       464 ~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      ..+++|++|+|++|.+++.    ++..+...++|++|+|++|.+++.    ++..+...++|+.|++++|+|++
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            4455666666666666532    233445555666666666666532    22333445666666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=3.1e-12  Score=126.99  Aligned_cols=159  Identities=18%  Similarity=0.116  Sum_probs=74.0

Q ss_pred             CCCcEEEccCceecccCCc----ccC-CCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccc-----
Q 007762          274 PGLFSLNISMNALDGSIPS----SFG-NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN-----  343 (590)
Q Consensus       274 ~~L~~L~L~~n~~~~~~~~----~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-----  343 (590)
                      +.|+.|++++|.++.....    .+. ..+.|++|++++|.+.+.....+...+++|++|++++|.+.+.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4555555555555422111    111 124566666666665533333333334456666666665543222222     


Q ss_pred             cCccccCceeccCcccccc----CCccccCCCCCCEEEccCCcccccC----ccccCCCCCccEEECCCCcCcCCC----
Q 007762          344 FNLTNLKWLQLEGNHFVGE----IPQSLSKCFVLEGLFLNNNSLSGMI----PRWLGNLTRLQHIMMPKNHLEGPI----  411 (590)
Q Consensus       344 ~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~----  411 (590)
                      ...++|++|++++|.++..    +...+..+++|++|++++|.+++..    ...+...++|++|+|++|.+.+..    
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            1234555555555555421    1222344555666666666554321    233444455666666655554321    


Q ss_pred             CcccCCCCCCcEEEcccCcCC
Q 007762          412 PVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       412 ~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      ...+...++|++|++++|.++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            122333455555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=3.8e-10  Score=111.56  Aligned_cols=105  Identities=22%  Similarity=0.144  Sum_probs=86.6

Q ss_pred             cEEEcccC-cCCCCCCCCCCCCcccEEECcC-ccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECc
Q 007762          422 QILDISDN-NISGSLPSCFHPLSIEHVHLSK-NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG  499 (590)
Q Consensus       422 ~~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~  499 (590)
                      ..++++++ .+++++ ......+|+.|+|++ |.+. .++...|.++++|+.|+|++|++++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip-~l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTT-TSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccC-CCCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 888544 444567899999996 8884 6666669999999999999999998888899999999999999


Q ss_pred             CCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          500 HNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       500 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      +|++++..+..+..++ |+.|++.+|++..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999966555666555 9999999999985

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=6.9e-10  Score=109.70  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=89.1

Q ss_pred             cEEECCCC-cCcCCCCcccCCCCCCcEEEccc-CcCCCCCCCCC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762          398 QHIMMPKN-HLEGPIPVEFCQLDWLQILDISD-NNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL  474 (590)
Q Consensus       398 ~~L~L~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  474 (590)
                      ..++++++ .+. .+|. +..+++|+.|+|++ |.+.+..+..+ .+++|+.|+|++|.+++ +++..|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeC
Confidence            35788888 787 4777 99999999999996 99998877665 48899999999999965 55555999999999999


Q ss_pred             CCCcCCCCccccccccCCCCEEECcCCcccCC
Q 007762          475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      ++|++++..+..|..++ |+.|+|.+|++...
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999977777777666 99999999999843

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=2e-09  Score=105.82  Aligned_cols=58  Identities=16%  Similarity=0.132  Sum_probs=27.6

Q ss_pred             ccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccC--CCCCCcEEEcc
Q 007762          367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC--QLDWLQILDIS  427 (590)
Q Consensus       367 l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~  427 (590)
                      +..++.|+.|++++|.-. .++. +. +++|++|++..+.+.......+.  .+++|++|+|+
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            344556666666555211 1111 22 55666666665554322222222  45666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=7.8e-09  Score=101.57  Aligned_cols=142  Identities=19%  Similarity=0.150  Sum_probs=69.5

Q ss_pred             cccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCc--cCCCCCcEEECcC--CccccccCc---
Q 007762           69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPL--VHLTSIEELHLSN--NHFQIPISL---  141 (590)
Q Consensus        69 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l--~~l~~L~~L~ls~--n~~~~~~~~---  141 (590)
                      .+..+++|+.|++++|.-. .++. +. +++|++|++..|.+...... .+  ..+++|++|+|+.  +...+....   
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            3455666777777665211 2222 22 56677777766655422111 12  2466677766642  111111100   


Q ss_pred             -ccc--ccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccch
Q 007762          142 -EPL--FNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPT  218 (590)
Q Consensus       142 -~~l--~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~  218 (590)
                       ..+  ..+++|+.|++.+|.+.......                        +. ....+++|++|+++.|.+.+..+.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~------------------------la-~a~~~~~L~~LdLs~n~L~d~G~~  297 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEM------------------------FL-ESDILPQLETMDISAGVLTDEGAR  297 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHH------------------------HH-HCSSGGGCSEEECCSSCCBHHHHH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHH------------------------HH-hCccCCCCCEEECCCCCCChHHHH
Confidence             111  24667777777766654321110                        00 001345677777777666544333


Q ss_pred             HHh---hcCCCCcEEEccCCCCCC
Q 007762          219 WLL---ENNTNLESLFLVNDSLAG  239 (590)
Q Consensus       219 ~~~---~~l~~L~~L~l~~~~~~~  239 (590)
                      .+.   ..+++|+.|+++.|.+++
T Consensus       298 ~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          298 LLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHhhcccCCcceEEECCCCcCCH
Confidence            332   345677777777766554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=3.8e-09  Score=93.65  Aligned_cols=117  Identities=19%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             cCCCCcEEecCCC-CCCCCCCCCCcccccCCCCCcEEEeeccccccc----CCccccCCCCCcEEEccccccccc----c
Q 007762           44 SMPSLKYLSLSDS-TLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS----LPWCMANMTSLRILYVSSNQLTGS----I  114 (590)
Q Consensus        44 ~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~  114 (590)
                      ..+.|++|+|++| .+++.+.......+...++|++|+|++|.+.+.    +...+...+.|++|++++|.|...    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4566666666666 665544334445555566666666666666532    233344456666666666666521    2


Q ss_pred             CCCCccCCCCCcEEEC--cCCcccccc---CccccccCCCccEEEccCCccc
Q 007762          115 SSSPLVHLTSIEELHL--SNNHFQIPI---SLEPLFNHSRLKVFWAKNNEIN  161 (590)
Q Consensus       115 ~~~~l~~l~~L~~L~l--s~n~~~~~~---~~~~l~~l~~L~~l~l~~~~~~  161 (590)
                      .. .+...++|++|++  ++|.+....   -...+...+.|+.|++++|.+.
T Consensus       114 ~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            22 3455566666666  556654221   1123444566777777666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=1.1e-08  Score=90.71  Aligned_cols=122  Identities=19%  Similarity=0.132  Sum_probs=94.3

Q ss_pred             CCCCCCCCCCeEeCcCC-cCcccc--ccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccccc
Q 007762           13 QGFPHFKSLELLDMECT-RIALNT--SFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS   89 (590)
Q Consensus        13 ~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~   89 (590)
                      .++...+.|++|++++| .+.-.+  .+...+. ..++|++|+|++|.+++.+.......+...++|++|+|++|.|.+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            35778999999999998 662221  2344455 6789999999999998766555566777888999999999999863


Q ss_pred             ----CCccccCCCCCcEEEc--cccccccc----cCCCCccCCCCCcEEECcCCccc
Q 007762           90 ----LPWCMANMTSLRILYV--SSNQLTGS----ISSSPLVHLTSIEELHLSNNHFQ  136 (590)
Q Consensus        90 ----~~~~~~~l~~L~~L~l--s~n~l~~~----~~~~~l~~l~~L~~L~ls~n~~~  136 (590)
                          +..++...+.|++|++  ++|.++..    +.. .+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence                4567778899999999  88988732    222 4566789999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=1.5e-07  Score=87.49  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             cCCCCcEEecCCCCCCCCCCCCC--cccccCCCCCcEEEeeccccc
Q 007762           44 SMPSLKYLSLSDSTLGTNSSKIL--DRGLCSLVHLQELYIYNNDLR   87 (590)
Q Consensus        44 ~l~~L~~L~L~~~~~~~~~~~~~--~~~l~~l~~L~~L~L~~n~i~   87 (590)
                      .+++|+.|+|++|.+++    +.  +..+..+++|++|+|++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~----l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYR----LDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCC----CGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCC----CccchhHHhhCCCCCEEECCCCccC
Confidence            45556666666555543    21  122334555555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=8.1e-07  Score=76.36  Aligned_cols=84  Identities=13%  Similarity=0.120  Sum_probs=49.5

Q ss_pred             CCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccc-ccccCCccccCC----CCCcEEEccccc-cccccCCCCc
Q 007762           46 PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND-LRGSLPWCMANM----TSLRILYVSSNQ-LTGSISSSPL  119 (590)
Q Consensus        46 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~~~~~l  119 (590)
                      .+|++|++++|.+++.++    ..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. ++..--. .+
T Consensus        61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred             ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence            356777777777665222    345667777777777774 554333344442    367777777764 5532112 35


Q ss_pred             cCCCCCcEEECcCCc
Q 007762          120 VHLTSIEELHLSNNH  134 (590)
Q Consensus       120 ~~l~~L~~L~ls~n~  134 (590)
                      .++++|++|++++|.
T Consensus       136 ~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGCTTCCEEEEESCT
T ss_pred             hcCCCCCEEECCCCC
Confidence            567777777777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=3.3e-06  Score=78.41  Aligned_cols=57  Identities=26%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             cccCCCCcEEEcCCCcCCCCccccccccC--CCCEEECcCCcccCCCc-------ccccCCCCCCEEE
Q 007762          463 FFNYHSLVTLDLSYNRLNGSISDWVDGLS--QLSHLILGHNNLEGEVP-------VQLCKLNQLQLLD  521 (590)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~  521 (590)
                      +..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|++.+..|       ..+..+|+|+.||
T Consensus       192 ~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          192 VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            34455566666666655543  1122222  55566666665554333       2244555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=1.7e-06  Score=74.35  Aligned_cols=83  Identities=10%  Similarity=0.035  Sum_probs=39.7

Q ss_pred             ccCceeccCccccccCCccccCCCCCCEEEccCCc-ccccCccccCCC----CCccEEECCCCc-CcCCCCcccCCCCCC
Q 007762          348 NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-LSGMIPRWLGNL----TRLQHIMMPKNH-LEGPIPVEFCQLDWL  421 (590)
Q Consensus       348 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l~~L  421 (590)
                      +|+.|++++|.++...-..+..|++|+.|++++|. +++.....+..+    ++|++|+|++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            35555555555443333344455555555555553 443332333332    345555555553 443333334455555


Q ss_pred             cEEEcccCc
Q 007762          422 QILDISDNN  430 (590)
Q Consensus       422 ~~L~l~~n~  430 (590)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.59  E-value=9.6e-06  Score=71.09  Aligned_cols=115  Identities=19%  Similarity=0.198  Sum_probs=56.2

Q ss_pred             cCCCCcEEecCCC-CCCCCCCCCCcccccCCCCCcEEEeeccccccc----CCccccCCCCCcEEEccccccccc----c
Q 007762           44 SMPSLKYLSLSDS-TLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS----LPWCMANMTSLRILYVSSNQLTGS----I  114 (590)
Q Consensus        44 ~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~  114 (590)
                      .-+.|+.|+|+++ .|.+.+.....+++.....|++|+|++|.+.+.    +..++...+.|++|+|+.|.|...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3455666666653 555444444445555555666666666665542    223333445666666666665421    1


Q ss_pred             CCCCccCCCCCcEEECcCCc---cccc---cCccccccCCCccEEEccCCc
Q 007762          115 SSSPLVHLTSIEELHLSNNH---FQIP---ISLEPLFNHSRLKVFWAKNNE  159 (590)
Q Consensus       115 ~~~~l~~l~~L~~L~ls~n~---~~~~---~~~~~l~~l~~L~~l~l~~~~  159 (590)
                      .. .+..-+.|++|+++++.   +...   .-...+..-+.|+.++++.+.
T Consensus       119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            11 23344556666665432   2110   011234445566666665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=2.6e-05  Score=68.29  Aligned_cols=121  Identities=12%  Similarity=0.103  Sum_probs=88.0

Q ss_pred             CCCCCCCCCeEeCcCC-cCcccc--ccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc--
Q 007762           14 GFPHFKSLELLDMECT-RIALNT--SFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG--   88 (590)
Q Consensus        14 ~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~--   88 (590)
                      .+.+-+.|+.|+|+++ .|.-.+  .+.+.+. .-+.|+.|+|++|.+++.+.....+.+...+.|++|+|++|.|.+  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            4456788999999985 442111  2445555 567899999999999987777777888888999999999999975  


Q ss_pred             --cCCccccCCCCCcEEEcccc---cccc----ccCCCCccCCCCCcEEECcCCccc
Q 007762           89 --SLPWCMANMTSLRILYVSSN---QLTG----SISSSPLVHLTSIEELHLSNNHFQ  136 (590)
Q Consensus        89 --~~~~~~~~l~~L~~L~ls~n---~l~~----~~~~~~l~~l~~L~~L~ls~n~~~  136 (590)
                        .+..++...+.|++|+++++   .+..    .+.. .+..-+.|+.|+++.+.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence              33455666778999999865   3331    1222 4566688999999887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.01  E-value=0.0012  Score=53.85  Aligned_cols=56  Identities=25%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             EEEcCCCcCC-CCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccC
Q 007762          471 TLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH  528 (590)
Q Consensus       471 ~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (590)
                      .++.++++++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 23333332  34556666666665444444555566666666666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.35  E-value=0.0077  Score=49.03  Aligned_cols=56  Identities=25%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             EEECcCccCC-CCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762          446 HVHLSKNMLH-GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       446 ~L~l~~n~~~-~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      .++.+++.++ ..+|.. +  .++|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555552 144433 2  136888888888888766777888888888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	590
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (210), Expect = 4e-19
 Identities = 47/276 (17%), Positives = 82/276 (29%), Gaps = 8/276 (2%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
                   +  +PV I         + +  N +     +SF   + L +L + +N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 314 IPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
                    +  +     N  L     +    L  L  L L+        P        L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
           + L+L +N+L  +      +L  L H+ +  N +       F  L  L  L +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQL 493
             P  F  L               L         +L  L L+ N             + L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWL 250

Query: 494 SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529
                  + +   +P +   L    L  L+ N+L G
Sbjct: 251 QKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 49/216 (22%), Positives = 72/216 (33%), Gaps = 5/216 (2%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
            +P  +      + +FL+ N +S +          L  + +  N L       F  L  L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 422 QILDISDNNISGSL-PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
           + LD+SDN    S+ P+ FH L   H          +L  G F    +L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTL 540
               D    L  L+HL L  N +          L+ L  L L  N +    P  F +  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 541 HESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQ 576
               +     N    +      P    +   L  N 
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 44/212 (20%), Positives = 71/212 (33%), Gaps = 27/212 (12%)

Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH 406
              + + L GN        S   C  L  L+L++N L+ +       L  L+ + +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 407 LEGPI-PVEFCQLDWLQILDISDNNISGSLPSCFHP-LSIEHVHLSKNMLHGQLKRGTFF 464
               + P  F  L  L  L +    +    P  F    ++++++L  N L   L   TF 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 465 NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN--------- 515
           +  +L  L L  NR++        GL  L  L+L  N +    P     L          
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 516 ---------------QLQLLDLSNNNLHGPIP 532
                           LQ L L++N       
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 36/288 (12%)

Query: 98  TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKN 157
            + + +++  N+++   ++S      ++  L L +N      +          ++  + N
Sbjct: 32  AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 158 NEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFP 217
            ++                              + P   +    L  + L    +    P
Sbjct: 91  AQL----------------------------RSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 218 TWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF 277
                    L+ L+L +++L             L  L +  N     +P      L  L 
Sbjct: 123 GL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD 180

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG 337
            L +  N +    P +F ++  L  L +  N L+  +P         L+YL L++N    
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

Query: 338 HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 385
              +R      L+  +   +     +PQ L+   +     L  N L G
Sbjct: 240 DCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 35/262 (13%)

Query: 75  HLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQ------------------------L 110
             Q ++++ N +            +L IL++ SN                          
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 111 TGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSL 170
             S+  +    L  +  LHL     Q  +        + L+  + ++N + A        
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALP---DDT 148

Query: 171 TAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESL 230
                 L+ L L       V    F    H L+ + L   ++    P    +    +   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 231 FLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSI 290
              N+  A P    +   + L+ L +++N +          +   L     S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 291 PSSFGNMKFLQLLDVTNNQLTG 312
           P          L  +  N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.6 bits (210), Expect = 7e-19
 Identities = 61/261 (23%), Positives = 97/261 (37%), Gaps = 6/261 (2%)

Query: 278 SLNISMNALDG--SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335
           +L++S   L     IPSS  N+ +L  L +                   L YL +++ ++
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395
            G +      +  L  L    N   G +P S+S    L G+  + N +SG IP   G+ +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 396 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLH 455
           +L   M    +              L  +D+S N + G     F                
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-S 232

Query: 456 GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 515
                G      +L  LDL  NR+ G++   +  L  L  L +  NNL GE+P Q   L 
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291

Query: 516 QLQLLDLSNNNLH--GPIPPC 534
           +  +   +NN      P+P C
Sbjct: 292 RFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 8e-15
 Identities = 53/244 (21%), Positives = 82/244 (33%), Gaps = 3/244 (1%)

Query: 303 LDVTNNQLTGEIPEHLAVG-CVNLEYLALSNN-SLEGHMFSRNFNLTNLKWLQLEGNHFV 360
           LD++   L    P   ++     L +L +    +L G +      LT L +L +   +  
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420
           G IP  LS+   L  L  + N+LSG +P  + +L  L  I    N + G IP  +     
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 421 LQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
           L        N                     +    +      F                
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVD-LSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTL 540
                 V     L+ L L +N + G +P  L +L  L  L++S NNL G IP   +    
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 541 HESY 544
             S 
Sbjct: 294 DVSA 297

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 8e-11
 Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 3/252 (1%)

Query: 202 LEYVDLSHMKMNGEFPTWL-LENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNN 260
           +  +DLS + +   +P    L N   L  L++   +       P  +           + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 261 FRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV 320
                  +    +  L +L+ S NAL G++P S  ++  L  +    N+++G IP+    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 321 GCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 380
                  + +S N L                      + +      L             
Sbjct: 172 FSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 440
            +        +G    L  + +  N + G +P    QL +L  L++S NN+ G +P   +
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 441 PLSIEHVHLSKN 452
               +    + N
Sbjct: 290 LQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 12/266 (4%)

Query: 72  SLVHLQELYIYNNDLRG--SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
               +  L +   +L     +P  +AN+  L  LY+             +  LT +  L+
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG 189
           +++ +    I        + + + ++ N          P   +    L  ++       G
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----TLPPSISSLPNLVGITFDGNRISG 163

Query: 190 VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK 249
            I   +                        +     NL   F+            +    
Sbjct: 164 AIPDSYGSFSKLFTS----MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
                 I          +    +   L  L++  N + G++P     +KFL  L+V+ N 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSL 335
           L GEIP+         +  A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 59/328 (17%), Positives = 106/328 (32%), Gaps = 59/328 (17%)

Query: 114 ISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAP 173
           +          +  L LS  +   P  +                                
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPI-------------------------------- 68

Query: 174 NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLV 233
                              P  L +   L ++ +  +          +   T L  L++ 
Sbjct: 69  -------------------PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 234 NDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSS 293
           + +++G     +   K L  LD S N   G +P  I  + P L  +    N + G+IP S
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDS 168

Query: 294 FGNMKFLQL-LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352
           +G+   L   + ++ N+LTG+IP   A   +    L+ +    +  +   +   T    L
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP 412
                 F             L+   L NN + G +P+ L  L  L  + +  N+L G IP
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLD---LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 413 VEFCQLDWLQILDISDNNI--SGSLPSC 438
            +   L    +   ++N       LP+C
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 9e-17
 Identities = 77/364 (21%), Positives = 136/364 (37%), Gaps = 30/364 (8%)

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           L  +  L      ++ S+   +  + +L  +  S+NQLT      PL +LT + ++ ++N
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN 97

Query: 133 NHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIF 192
           N       L  L N + L +F  +  +I+     +          +   +S+  G   + 
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 193 PKFLYHQH-------DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPI 245
                +Q        +L  ++   +  N      +L   TNLESL   N+ ++     P+
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PL 215

Query: 246 HSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV 305
                L  L ++ N  +    +     L  L  L+++ N +    P     +  L  L +
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQ 365
             NQ++   P        NLE      N  +    S   NL NL +L L  N+     P 
Sbjct: 271 GANQISNISPLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 366 SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425
            +S    L+ LF  NN +S      L NLT +  +    N +    P     L  +  L 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 426 ISDN 429
           ++D 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 4e-15
 Identities = 69/431 (16%), Positives = 133/431 (30%), Gaps = 66/431 (15%)

Query: 95  ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFW 154
             +       +    +T ++S +    L  +  L       +   S++ +   + L    
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 72

Query: 155 AKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNG 214
             NN++       P           ++ +       +          L    ++ +    
Sbjct: 73  FSNNQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 215 EFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLP 274
                     ++     +   S     +     ++   L  ++N      +         
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD-------- 181

Query: 275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS 334
                   +++   S  S    +  L+ L  TNNQ++   P  +     NL+ L+L+ N 
Sbjct: 182 --------ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 230

Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
           L+        +LTNL  L L  N      P  LS    L  L L  N +S + P     L
Sbjct: 231 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GL 284

Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNML 454
           T L ++ + +N            L  L  L +  NNIS   P                  
Sbjct: 285 TALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP------------------ 324

Query: 455 HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL 514
                     +   L  L  + N+++      +  L+ ++ L  GHN +    P  L  L
Sbjct: 325 --------VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 372

Query: 515 NQLQLLDLSNN 525
            ++  L L++ 
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 6e-14
 Identities = 42/195 (21%), Positives = 62/195 (31%), Gaps = 14/195 (7%)

Query: 338 HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397
              S    LTNL+ L    N      P  +     L+ L LN N L       L +LT L
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNL 243

Query: 398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ 457
             + +  N +    P     L  L  L +  N IS   P                +    
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 458 LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 517
                  N  +L  L L +N ++      V  L++L  L   +N +       L  L  +
Sbjct: 302 ----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 518 QLLDLSNNNLHGPIP 532
             L   +N +    P
Sbjct: 354 NWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 24/215 (11%)

Query: 71  CSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHL 130
             L +L+ L   NN +    P  +  +T+L  L ++ NQL        L  LT++ +L L
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---IGTLASLTNLTDLDL 248

Query: 131 SNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGV 190
           +NN       L  L   + LK+   + + I+           P   L+ L+      + +
Sbjct: 249 ANNQISNLAPLSGLTKLTELKLGANQISNIS-----------PLAGLTALTNLELNENQL 297

Query: 191 IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKR 250
                + +  +L Y+ L    ++   P   + + T L+ LF  N+ ++      + +   
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS--SLANLTN 352

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNA 285
           +  L   +N      P+     L  +  L ++  A
Sbjct: 353 INWLSAGHNQISDLTPLAN---LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 23  LLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIY 82
           L  +    +  N         ++ +L YL+L  + +   S       + SL  LQ L+  
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFA 337

Query: 83  NNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
           NN +       +AN+T++  L    NQ++      PL +LT I +L L++ 
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 55/345 (15%), Positives = 113/345 (32%), Gaps = 21/345 (6%)

Query: 13  QGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS 72
            G  +  +L  ++    ++   T       +++  L  + ++++ +   +       L  
Sbjct: 60  DGVEYLNNLTQINFSNNQLTDITPL-----KNLTKLVDILMNNNQIADITPLANLTNLTG 114

Query: 73  LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
           L          + L+         ++S  I  +S+     S+      +  +  +  L+N
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLAN 173

Query: 133 NHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIF 192
                 + +          +    N E         S   P   L+ L   S  G+ +  
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 233

Query: 193 PKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLR 252
              L    +L  +DL++ +++   P   L   T L  L L  + ++      I     L 
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN-----ISPLAGLT 285

Query: 253 LLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG 312
            L     N      +     L  L  L +  N +    P    ++  LQ L   NN+++ 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN 357
                LA    N+ +L+  +N +     +   NLT +  L L   
Sbjct: 344 --VSSLA-NLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 7e-15
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 33/267 (12%)

Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
           ++P        LLD+ NN        +  + L  L +L +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN------------------ 343
            L ++ NQL  E+PE +      L         +   +F+                    
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 344 -----FNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
                  +  L ++++   +    IPQ L     L  L L+ N ++ +    L  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNI-TTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHG-- 456
            + +  N +             L+ L +++N +            I+ V+L  N +    
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 457 ---QLKRGTFFNYHSLVTLDLSYNRLN 480
                  G      S   + L  N + 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 1e-14
 Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 8/258 (3%)

Query: 289 SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN 348
            +P          LLD+ NN++T            NL  L L NN +          L  
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 349 LKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE 408
           L+ L L  N       +       L         +   +   L  +  +  +        
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSS 139

Query: 409 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHS 468
           G     F  +  L  + I+D NI+          S+  +HL  N +       +    ++
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVD-AASLKGLNN 196

Query: 469 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
           L  L LS+N ++   +  +     L  L L +N L  +VP  L     +Q++ L NNN+ 
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255

Query: 529 GPIPPCFDNTTLHESYSN 546
                 F     +   ++
Sbjct: 256 AIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 6/203 (2%)

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
           ++P+ L        L L NN ++ +      NL  L  +++  N +    P  F  L  L
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG 481
           + L +S N +   LP        E       +   +       N   +V L  +  + +G
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 482 SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLH 541
             +    G+ +LS++ +   N+     +       L  L L  N +              
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 542 ESYSNSSSPNKQFEIFFFIQGPQ 564
                S +     +       P 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPH 220

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 50/308 (16%), Positives = 100/308 (32%), Gaps = 46/308 (14%)

Query: 34  NTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWC 93
           +    ++  +  P    L L ++ +    ++I D    +L +L  L + NN +    P  
Sbjct: 19  DLGLEKVPKDLPPDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 94  MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVF 153
            A +  L  LY+S NQL       P     +++EL +  N                    
Sbjct: 75  FAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENE------------------I 112

Query: 154 WAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMN 213
                 +   + Q   +      L             I          L Y+ ++   + 
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSG---------IENGAFQGMKKLSYIRIADTNIT 163

Query: 214 GEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVL 273
              P  L     +L  L L  + +       +     L  L +S N+             
Sbjct: 164 -TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANT 218

Query: 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG-----EIPEHLAVGCVNLEYL 328
           P L  L+++ N L   +P    + K++Q++ + NN ++        P        +   +
Sbjct: 219 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 329 ALSNNSLE 336
           +L +N ++
Sbjct: 278 SLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 4/151 (2%)

Query: 409 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHS 468
           GP+    CQ    +++  SD  +   +P    P     + L  N +   +K G F N  +
Sbjct: 1   GPVCPFRCQCHL-RVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKITE-IKDGDFKNLKN 56

Query: 469 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
           L TL L  N+++         L +L  L L  N L+         L +L++ +     + 
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

Query: 529 GPIPPCFDNTTLHESYSNSSSPNKQFEIFFF 559
             +    +   + E  +N    +      F 
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 41/290 (14%), Positives = 88/290 (30%), Gaps = 22/290 (7%)

Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE 313
           LD++  N    +   +  +  G+ +     + +D  +   F   + +Q +D++N+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 314 IPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
               +   C  L+ L+L    L   + +     +NL  L L G     E           
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
               LN +       + +          + + +L G                        
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS------------- 168

Query: 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSY-NRLNGSISDWVDGLSQ 492
                    ++ H+ LS +++        FF  + L  L LS    +       +  +  
Sbjct: 169 --TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 493 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542
           L  L +     +G + +       L  L ++ ++      P   N    E
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 12/241 (4%)

Query: 205 VDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGH 264
           +DL+   ++ +    LL                         S  R++ +D+SN+     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 265 IPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV-TNNQLTGEIPEHLAVGCV 323
               I      L +L++    L   I ++      L  L++   +  +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQ-------LEGNHFVGEIPQSLSKCFVLEGL 376
            L+ L LS          +       + +         +                ++   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 377 FLNNNSLSGMIPRWLGNLTRLQHIMMPK-NHLEGPIPVEFCQLDWLQILDISDNNISGSL 435
             ++  L     +    L  LQH+ + +   +     +E  ++  L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 436 P 436
            
Sbjct: 242 Q 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 38/265 (14%), Positives = 79/265 (29%), Gaps = 13/265 (4%)

Query: 10  LRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRG 69
           L         S  ++   C R  ++    +  S     ++++ LS+S +  ++   L   
Sbjct: 12  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS--PFRVQHMDLSNSVIEVST---LHGI 66

Query: 70  LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQL---TGSISSSPLVHLTSIE 126
           L     LQ L +    L   +   +A  ++L  L +S           +           
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 127 ELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGY 186
            L    +  +  + +        +          N + +   +L      L  L LS   
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 187 GDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVN-DSLAGPFRLPI 245
                  +  +  + L+++ LS            L     L++L +           L  
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK- 245

Query: 246 HSHKRLRLLDISNNNFRGHIPVEIG 270
              + L  L I+ ++F       IG
Sbjct: 246 ---EALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 10/231 (4%)

Query: 176 QLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVND 235
            +        + D  +   F   +  ++++DLS+  +       +L   + L++L L   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 236 SLAGPFRLPIHSHKRLRLLDI-SNNNFRGHIPVEIGDVLPGLFSLNI------SMNALDG 288
            L+ P    +  +  L  L++   + F       +      L  LN+      +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 289 SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN 348
           ++      +  L L     N    ++   +      +      +  L+   F   F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 349 LKWLQLEG-NHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
           L+ L L      + E    L +   L+ L +      G +      L  LQ
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG 481
           Q LD++  N+   +        +      ++ +   L     F+   +  +DLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPL--AEHFSPFRVQHMDLSNSVIEV 60

Query: 482 -SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTL 540
            ++   +   S+L +L L    L   +   L K + L  L+LS  +           ++ 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 541 H 541
            
Sbjct: 121 S 121

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 31/249 (12%), Positives = 72/249 (28%), Gaps = 9/249 (3%)

Query: 85  DLRGS--LPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLE 142
           DL G    P     + S  ++     +       +       ++ + LSN+  ++     
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 143 PLFNHSRLKVFWAKNNEIN----AEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYH 198
            L   S+L+    +   ++      + ++ +L   N               +     L  
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 199 QHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISN 258
            +     D +   +                S +  N   +      +     L  LD+S+
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSD 184

Query: 259 NNFRGHIPVEIGDVLPGLFSLNIS-MNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH 317
           +    +   +    L  L  L++S    +        G +  L+ L V    +     + 
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQL 243

Query: 318 LAVGCVNLE 326
           L     +L+
Sbjct: 244 LKEALPHLQ 252

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 43/236 (18%), Positives = 67/236 (28%), Gaps = 32/236 (13%)

Query: 293 SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352
               +     ++     LT  +P  L     +   L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP 412
            L+                                 +  G L  L  + +  N L+    
Sbjct: 61  NLDRAEL--------------------------TKLQVDGTLPVLGTLDLSHNQLQSLPL 94

Query: 413 VEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTL 472
           +       L +LD+S N ++         L        K      L  G       L  L
Sbjct: 95  LGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 473 DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528
            L+ N L    +  ++GL  L  L+L  N+L   +P      + L    L  N   
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 8/205 (3%)

Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
              ++    N    +P ++         L++S N L     ++      L  L++   +L
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKC 370
           T    +      + +      +++    +      L  L  L +  N        +L   
Sbjct: 68  TKLQVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 430
             L+ L+L  N L  + P  L    +L+ + +  N+L          L+ L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 431 ISGSLPSCFHPLSIEHVHLSKNMLH 455
           +       F    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 35/181 (19%), Positives = 54/181 (29%), Gaps = 6/181 (3%)

Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
            +   L L  + L       +  + RL  L++                LP L +L++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT---LPVLGTLDLSHN 87

Query: 285 ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF 344
            L                    +      +P     G   L+ L L  N L+        
Sbjct: 88  QLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404
               L+ L L  N+        L+    L+ L L  NSL   IP+       L    +  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 405 N 405
           N
Sbjct: 205 N 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 52/448 (11%), Positives = 116/448 (25%), Gaps = 21/448 (4%)

Query: 99  SLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ---IPISLEPLFNHSRLKVFWA 155
            ++ L +   +L+ +  +  L  L   + + L +              L  +  L     
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 156 KNNEINAEITQS--PSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMN 213
           ++NE+           L  P+ ++ +LSL +    G            L  +   H+  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 214 GEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVL 273
                              + D      +L +              +     P      +
Sbjct: 123 LLGDAG------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333
                    +  L   +  S   ++ L+L               +     +L  LAL +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGN 393
            L     +           +L           +     +   L    +     +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 394 LTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNM 453
               + +          +   + +         S  +   +       L I +    ++ 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 355

Query: 454 LHGQLKRGTFFNYHSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGEVPV 509
              +L +G       L  L L+   ++     S++  +     L  L L +N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 510 QLCK-----LNQLQLLDLSNNNLHGPIP 532
           QL +        L+ L L +      + 
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 57/457 (12%), Positives = 119/457 (26%), Gaps = 28/457 (6%)

Query: 20  SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQEL 79
            ++ LD++C  +  + +    +   +   + + L D  L     K +   L     L EL
Sbjct: 3   DIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 80  YIYNNDLRGSLPWCMA-----NMTSLRILYVSSNQLTGSISS----------SPLVHLTS 124
            + +N+L      C+          ++ L + +  LTG+             +      S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 125 IEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSS 184
              L  +         L+P     +L++ +   +  + E   S     P+F+   +S + 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 185 GYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNL--ESLFLVNDSLAGPFR 242
               GV            +   L                       SL  +         
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 243 LPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL 302
           + +       L   S           I     G     +        +  +   +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE 362
             +    L                  A  ++       +R      +   +LE       
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 363 IPQSLSKCFVLEGLFLNNNSLSGM----IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ- 417
                    VL  L+L +  +S      +   L     L+ + +  N L     ++  + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 418 ----LDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
                  L+ L + D   S  +      L  +   L 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 52/463 (11%), Positives = 106/463 (22%), Gaps = 31/463 (6%)

Query: 47  SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG----SLPWCMANMTSLRI 102
            ++ L +    L       L   L  L   Q + + +  L       +   +    +L  
Sbjct: 3   DIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 103 LYVSSNQLTG----SISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNN 158
           L + SN+L       +          I++L L N                 L      + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 159 EINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPT 218
             N        L        +           +    L +             +    P 
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQ---------CRLEKLQLEYCSLSAASCEPLASVLRAKPD 170

Query: 219 WLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFS 278
           +     +N +        L    +      + L+L      +        I      L  
Sbjct: 171 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGH 338
           L +  N L     +            +    +          G +     A  +      
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 290

Query: 339 MFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
             +   +       +             +  C        + +S+       L       
Sbjct: 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 350

Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG----SLPSCFHPL-SIEHVHLSKNM 453
            +             +      L++L ++D ++S     SL +      S+  + LS N 
Sbjct: 351 RLEDAGVRELCQGLGQPGS--VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 454 LHGQ----LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQ 492
           L       L          L  L L     +  + D +  L +
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 323 VNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHF----VGEIPQSLSKCFVLEGLF 377
           ++++ L +    L    ++     L   + ++L+          +I  +L     L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 378 LNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420
           L +N L  +    +    +     + K  L+            
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 468 SLVTLDLSYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVPVQLCK----LNQLQLLDL 522
            + +LD+    L+ +  ++ +  L Q   + L    L       +         L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 523 SNNNLHGPIPPCF 535
            +N L      C 
Sbjct: 63  RSNELGDVGVHCV 75

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 292 SSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKW 351
           + + N    + LD+   ++   + E+L       + +  S+N +          L  LK 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM----IPRWLGNLTRLQHIMMPKNHL 407
           L +  N               L  L L NNSL  +        L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 408 EGPIPVEFCQLDWLQILD 425
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 27/238 (11%)

Query: 95  ANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFW 154
             + +   +    + +T +++ +    L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 155 AKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNG 214
            K+N+I                L  L+  +         K +     L+ +    +    
Sbjct: 70  LKDNQIT-----------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 215 EFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLP 274
                 L   +NL+ L+L  + +     L   ++ +   +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
            L +L    N +    P    ++  L  + + NNQ++   P        NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 22/203 (10%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
            L N   +    ++    + Q+ L     +  L      ++ +    +  L  L  + + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDG---ITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463
            N +    P++         L  +      ++       +++        +         
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 464 FN--------------YHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPV 509
                                   LS      S    +  LS+L+ L    N +    P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 510 QLCKLNQLQLLDLSNNNLHGPIP 532
            L  L  L  + L NN +    P
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 32/254 (12%), Positives = 66/254 (25%), Gaps = 43/254 (16%)

Query: 271 DVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLAL 330
             L     +    + +  ++  +  ++  +  L      +T    E +     NL  L L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQ-YLNNLIGLEL 70

Query: 331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW 390
            +N +      +N        L       V  I    S   +        +         
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 391 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450
           L  L    + +   + L G   +++  +                                
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGN------------------------------ 160

Query: 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510
                         N   L TL    N+++      +  L  L  + L +N +    P  
Sbjct: 161 ----AQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP-- 212

Query: 511 LCKLNQLQLLDLSN 524
           L   + L ++ L+N
Sbjct: 213 LANTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 435
           L L +  L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL---NGSISDWVDGLSQ 492
               +   ++ + L  N L          +   LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 493 LSHLI 497
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG 481
           ++L ++  +++  L      L + H+ LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 482 SISDWVDGLSQLSHLILGHNNLEG-EVPVQLCKLNQLQLLDLSNNNLHG 529
                     Q   L+L +N L+       L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 43  ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
           E +  + +L LS      N  + L   L +L  L+ L   +N L              + 
Sbjct: 17  EQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALENVDGVANLPRL--QE 69

Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
           L + +N+L  S +  PLV    +  L+L  N  
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 29/212 (13%), Positives = 63/212 (29%), Gaps = 4/212 (1%)

Query: 98  TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKN 157
            +   L     +L   I          +E++ +S N     I  +   N  +L     + 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 158 NEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFP 217
                 I        PN Q   +S  +     +     ++    +      ++ ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLIS--NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 218 TWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF 277
              +  +     L+L  + +        +  +   L    NNN    +P ++     G  
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPV 204

Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ 309
            L+IS   +         N+K L+     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 41/227 (18%), Positives = 66/227 (29%), Gaps = 8/227 (3%)

Query: 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE 362
                +++T EIP  L     N   L      L            +L+ +++  N  +  
Sbjct: 13  FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 363 IPQSLSKCFVLEGLFLN---NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 419
           I   +               NN L      +         ++        P   +   L 
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 420 WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRL 479
            + +    + NI     + F  LS E V L  N    Q      FN   L  L+LS N  
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 480 NGSISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 525
              + + V  G S    L +    +       L  L +L+     N 
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 37/253 (14%), Positives = 74/253 (29%), Gaps = 27/253 (10%)

Query: 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT 311
           R+     +     IP ++         L   +  L      +F     L+ ++++ N + 
Sbjct: 11  RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 312 GEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCF 371
             I   +      L  + +   +   ++    F         L  N  +  +P       
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP------- 119

Query: 372 VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI 431
                          + +       L  I    N                 IL ++ N I
Sbjct: 120 --------------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 165

Query: 432 SGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
                  F+   ++ ++LS N    +L    F      V LD+S  R++   S  ++ L 
Sbjct: 166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225

Query: 492 QLSHLILGHNNLE 504
           +L        NL+
Sbjct: 226 KLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 25/206 (12%), Positives = 57/206 (27%), Gaps = 4/206 (1%)

Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH 406
            N   L+            + S    LE + ++ N +  +I   + +     H +  +  
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 407 LEGPIPVEFCQLDWLQILDISDNNIS----GSLPSCFHPLSIEHVHLSKNMLHGQLKRGT 462
                       +   +  +  +N        +        +         +H   +   
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL 522
                  V L L+ N +    +   +G       +  +NNLE          +   +LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 523 SNNNLHGPIPPCFDNTTLHESYSNSS 548
           S   +H       +N     + S  +
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYN 234

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 52/320 (16%), Positives = 88/320 (27%), Gaps = 48/320 (15%)

Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
           RL     ++   L+++N          + ++ P L SL  S N+L   +P    ++K L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 302 L--------------LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFN-- 345
           +              L+                    L+ + + NNSL+           
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 346 ----------LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395
                     L  L+ L      +             L    +   +        L NL 
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 396 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLH 455
            L  I    N L+    +           +   +         F  +S         +  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 456 GQLKRGTFFNYH--------SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEV 507
                    N          SL  L++S N+L     +      +L  LI   N+L  EV
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNHLA-EV 319

Query: 508 PVQLCKLNQLQLLDLSNNNL 527
           P        L+ L +  N L
Sbjct: 320 PELP---QNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 50/311 (16%), Positives = 91/311 (29%), Gaps = 15/311 (4%)

Query: 29  TRIALNTSFLQIISESMPSLKYLSLSDSTLGT--NSSKILDRGLCSLVHLQELYIYNNDL 86
             + LN   L  + E  P L+ L  S ++L       + L   L    +L+ L      L
Sbjct: 41  HELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 100

Query: 87  RGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFN 146
                          +   S  ++    +      L  + +L  S        +      
Sbjct: 101 EYLGVSNNQLEKLPELQNSSFLKIIDVDN----NSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 147 HSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVD 206
             +   F       N  + + P L      +   +        +    FL   +    + 
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 207 LSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIP 266
            +   +        + +N   +   L            I S       ++   N   +  
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
             + D+ P L  LN+S N L   +P+       L+ L  + N L  E+PE       NL+
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLK 327

Query: 327 YLALSNNSLEG 337
            L +  N L  
Sbjct: 328 QLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 197 YHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDI 256
              +  +  +L       +    +    + L       ++ +   R        L  L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 257 SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE 316
           SNN        E+  + P L  L  S N L   +P    N   L+ L V  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 317 HLAVGCVNLEYLALSN 332
                  ++E L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 28/195 (14%), Positives = 61/195 (31%), Gaps = 22/195 (11%)

Query: 345 NLTNLKWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
                    L+       + Q+ L+    ++ +  NN+ +  +    +  L  +  + + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463
            N L    P+   +      LD +      SL       S+   H   + ++G +     
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 464 FNYHSLVTLDLSYNRLNGSISDWVD--------------GLSQLSHLILGHNNLEGEVPV 509
            + +           L+                      GL++L +L L  N++      
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR 194

Query: 510 QLCKLNQLQLLDLSN 524
            L  L  L +L+L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 33/209 (15%)

Query: 265 IPVEIGDVLP-----GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLA 319
           +P  I  +            N+   ++  ++  +   +  +  +   N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 320 VGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL------------------QLEGNHFVG 361
               N+  L L+ N L       N       +L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
                L     LE L+L NN ++ +       LT+L  + +  N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 422 QILDISDNNISGSLPSCFHPLSIEHVHLS 450
           Q L +S N+IS  L +     +++ + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL-NNNSLSGMIPRWLGNLTRLQHIMMPKN 405
                L+   +  + +    L     L  L++ N   L  +  R L  L  L+++ + K+
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 406 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFN 465
            L    P  F     L  L++S N +          LS++ + LS N LH          
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 466 YHSLVTLDLSYNRLNGSISDWVDGLSQLS 494
           +       +   +L       +  +   S
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 19/119 (15%), Positives = 31/119 (26%)

Query: 289 SIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN 348
                    + L  L + N Q    +      G   L  L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 349 LKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
           L  L L  N       +++    + E +   N        RWL          +P+  L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 9e-04
 Identities = 46/323 (14%), Positives = 81/323 (25%), Gaps = 20/323 (6%)

Query: 19  KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQE 78
           KSL+L  +         + L        S+K + LS +T+GT +++ L   + S   L+ 
Sbjct: 8   KSLKLDAITTEDEKSVFAVL----LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 79  LYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIP 138
               +             +  L    +   +L     S      T+ E L    +     
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 139 ISLE-PLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLY 197
             L                       + +      P   +         G    + K   
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDIS 257
               L  V +    +  E    LL           V D     F     S   + L    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 258 NNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE---- 313
           N    G     +                       S      LQ L +  N++  +    
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAF-----------SKLENIGLQTLRLQYNEIELDAVRT 292

Query: 314 IPEHLAVGCVNLEYLALSNNSLE 336
           +   +     +L +L L+ N   
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 32/298 (10%), Positives = 70/298 (23%), Gaps = 23/298 (7%)

Query: 244 PIHSHKRLRLLDISNNNFRGHIPVEIGDVL---PGLFSLNISMNALDGSIPSSFGNMKFL 300
            +     ++ + +S N         + + +     L     S              ++ L
Sbjct: 26  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 85

Query: 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV 360
               +   +L               +             F          +L   G    
Sbjct: 86  LQALLKCPKLHT---------VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 136

Query: 361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420
                + +   +       N      I      L         K      +      +  
Sbjct: 137 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 196

Query: 421 LQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
               +  ++ +   L  C     ++    +   L          ++ +L  L L+   L+
Sbjct: 197 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 256

Query: 481 GSISDWV------DGLSQLSHLILGHNNLEGEVPVQLC-----KLNQLQLLDLSNNNL 527
              +  V           L  L L +N +E +    L      K+  L  L+L+ N  
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	590
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.24

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.2e-27  Score=232.05  Aligned_cols=257  Identities=30%  Similarity=0.433  Sum_probs=176.7

Q ss_pred             CcccEEEccCCcCCC--CCchhhhhcCCCCcEEEccC-ceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCC
Q 007762          249 KRLRLLDISNNNFRG--HIPVEIGDVLPGLFSLNISM-NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNL  325 (590)
Q Consensus       249 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  325 (590)
                      .+++.|+++++.+.+  .+|..+.. +++|++|++++ |.+++.+|..++++++|++|++++|++.+..+.. +..+..|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhcccccccccccc-ccchhhh
Confidence            357777777777765  35666665 77777777765 5666677777777777777777777776433333 3346677


Q ss_pred             cEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCC-CEEEccCCcccccCccccCCCCCccEEECCC
Q 007762          326 EYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL-EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK  404 (590)
Q Consensus       326 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  404 (590)
                      +.++++.|.+.+..|..+..+++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .+++.+
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            777777776666666666666777777777776666666666555554 666666666666666555554433 466666


Q ss_pred             CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762          405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS  484 (590)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  484 (590)
                      +...+.+|..+..+++++.+++++|.+.                       +.++ . +..+++|+.|++++|++++.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~-----------------------~~~~-~-~~~~~~L~~L~Ls~N~l~g~iP  261 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLA-----------------------FDLG-K-VGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEEC-----------------------CBGG-G-CCCCTTCCEEECCSSCCEECCC
T ss_pred             cccccccccccccccccccccccccccc-----------------------cccc-c-cccccccccccCccCeecccCC
Confidence            6666666666666666666666666554                       3333 2 5566788899999999988888


Q ss_pred             ccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCc-cCCC-Cccc
Q 007762          485 DWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNN-LHGP-IPPC  534 (590)
Q Consensus       485 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~p~~  534 (590)
                      .+|+++++|++|+|++|+++|.+|+ +.++++|+.+++++|+ +.|. +|.|
T Consensus       262 ~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             hHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCCC
Confidence            8898999999999999999888874 5778888889999887 4543 4543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=3.1e-27  Score=229.27  Aligned_cols=233  Identities=31%  Similarity=0.425  Sum_probs=174.9

Q ss_pred             CCcEEEccCccccc--ccchhhhcCCCCCcEEEccC-CcCCCccCccccCccccCceeccCccccccCCccccCCCCCCE
Q 007762          299 FLQLLDVTNNQLTG--EIPEHLAVGCVNLEYLALSN-NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEG  375 (590)
Q Consensus       299 ~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  375 (590)
                      +++.|+++++.+.+  .+|..+. .+++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            45555555555554  2444444 366666666654 5555556666666677777777777766666666667777777


Q ss_pred             EEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCC-cEEEcccCcCCCCCCCCCCCCcccEEECcCccC
Q 007762          376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL-QILDISDNNISGSLPSCFHPLSIEHVHLSKNML  454 (590)
Q Consensus       376 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~  454 (590)
                      +++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+.......++++++..
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777777776777777777777777777777776777777666665 677777777777777666666666788888877


Q ss_pred             CCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccc
Q 007762          455 HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC  534 (590)
Q Consensus       455 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  534 (590)
                      .+.++.. +..+++++.+++++|.+.+.++ .+..+++|++|++++|++++.+|..+.++++|++|+|++|+++|.+|+.
T Consensus       210 ~~~~~~~-~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         210 EGDASVL-FGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EECCGGG-CCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccccccc-cccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            6777665 7788999999999999987655 5888999999999999999999999999999999999999999999953

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=5e-25  Score=220.41  Aligned_cols=356  Identities=26%  Similarity=0.313  Sum_probs=209.0

Q ss_pred             eCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEE
Q 007762           25 DMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILY  104 (590)
Q Consensus        25 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  104 (590)
                      .++..  .+.+.+...   .+.+|++|+++++.|+.    +  +.+..+++|++|++++|++++ ++ .++++++|++|+
T Consensus        28 ~l~~~--~~~~~~~~~---~l~~l~~L~l~~~~I~~----l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~   94 (384)
T d2omza2          28 VLGKT--NVTDTVSQT---DLDQVTTLQADRLGIKS----I--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDIL   94 (384)
T ss_dssp             HTTCS--STTSEECHH---HHTTCCEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred             HhCCC--CCCCccCHH---HhCCCCEEECCCCCCCC----c--cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccc
Confidence            44444  344444432   45678888888888754    4  357778888888888888874 33 377888888888


Q ss_pred             ccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccC
Q 007762          105 VSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSS  184 (590)
Q Consensus       105 ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  184 (590)
                      +++|.+. .++.  +..+++|+.|+++++.+.+.   ........+.......+.+..........   .........  
T Consensus        95 L~~n~i~-~i~~--l~~l~~L~~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~--  163 (384)
T d2omza2          95 MNNNQIA-DITP--LANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISDISALSGLT---SLQQLSFGN--  163 (384)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC---GGGTTCTTCSEEEEEEEEECCCGGGTTCT---TCSEEEEEE--
T ss_pred             ccccccc-cccc--cccccccccccccccccccc---ccccccccccccccccccccccccccccc---ccccccccc--
Confidence            8888887 4443  77788888888888776532   23344455555555444433221111000   000000000  


Q ss_pred             CCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCC
Q 007762          185 GYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGH  264 (590)
Q Consensus       185 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  264 (590)
                          .......+.............+....  ... ...+++++.+.+++|.+.+..+  +..+++|+.|++++|.++ .
T Consensus       164 ----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~  233 (384)
T d2omza2         164 ----QVTDLKPLANLTTLERLDISSNKVSD--ISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-D  233 (384)
T ss_dssp             ----SCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-C
T ss_pred             ----ccchhhhhcccccccccccccccccc--ccc-cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-C
Confidence                00111223333444444444444321  111 3566777777777777666443  345667777777777776 3


Q ss_pred             CchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCcccc
Q 007762          265 IPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF  344 (590)
Q Consensus       265 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  344 (590)
                      ++ .+. .+++|+.+++++|.+++..  .+..+++|++++++++.+. .++.  +..++.++.+.+..|.+.+.  ..+.
T Consensus       234 ~~-~l~-~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~  304 (384)
T d2omza2         234 IG-TLA-SLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDI--SPIS  304 (384)
T ss_dssp             CG-GGG-GCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCC--GGGG
T ss_pred             cc-hhh-cccccchhccccCccCCCC--cccccccCCEeeccCcccC-CCCc--cccccccccccccccccccc--cccc
Confidence            33 232 2667777777777766432  2566777777777777766 4433  22466677777777766542  2355


Q ss_pred             CccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762          345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL  424 (590)
Q Consensus       345 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  424 (590)
                      .+++++.|++++|.+.+..  .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++++..|  +.++++|+.|
T Consensus       305 ~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L  378 (384)
T d2omza2         305 NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQL  378 (384)
T ss_dssp             GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEe
Confidence            5666777777777666432  25666777777777776653 22 46666777777777777664332  6666777777


Q ss_pred             EcccC
Q 007762          425 DISDN  429 (590)
Q Consensus       425 ~l~~n  429 (590)
                      ++++|
T Consensus       379 ~L~~N  383 (384)
T d2omza2         379 GLNDQ  383 (384)
T ss_dssp             ECCCE
T ss_pred             eCCCC
Confidence            77665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.3e-25  Score=220.89  Aligned_cols=353  Identities=24%  Similarity=0.290  Sum_probs=255.5

Q ss_pred             CCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEee
Q 007762            3 SYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIY   82 (590)
Q Consensus         3 ~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~   82 (590)
                      ..++++.|+   .+.+.+|++|++++++|  . .+ +.+. .+++|++|++++|.+++    ++  .++++++|++|+++
T Consensus        31 ~~~~~~~~~---~~~l~~l~~L~l~~~~I--~-~l-~gl~-~L~nL~~L~Ls~N~l~~----l~--~l~~L~~L~~L~L~   96 (384)
T d2omza2          31 KTNVTDTVS---QTDLDQVTTLQADRLGI--K-SI-DGVE-YLNNLTQINFSNNQLTD----IT--PLKNLTKLVDILMN   96 (384)
T ss_dssp             CSSTTSEEC---HHHHTTCCEEECCSSCC--C-CC-TTGG-GCTTCCEEECCSSCCCC----CG--GGTTCTTCCEEECC
T ss_pred             CCCCCCccC---HHHhCCCCEEECCCCCC--C-Cc-cccc-cCCCCCEEeCcCCcCCC----Cc--cccCCccccccccc
Confidence            345556665   45678899999999955  3 33 3455 89999999999999976    54  49999999999999


Q ss_pred             cccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccc
Q 007762           83 NNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINA  162 (590)
Q Consensus        83 ~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  162 (590)
                      +|.+.+. + .+..+++|+.|+++++.++ .+..  ......+.......+.+..... .....................
T Consensus        97 ~n~i~~i-~-~l~~l~~L~~L~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  170 (384)
T d2omza2          97 NNQIADI-T-PLANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP  170 (384)
T ss_dssp             SSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGG
T ss_pred             ccccccc-c-ccccccccccccccccccc-cccc--cccccccccccccccccccccc-ccccccccccccccccchhhh
Confidence            9999853 3 3889999999999999887 3333  3445677777776666542111 111111222222211111111


Q ss_pred             cccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCc
Q 007762          163 EITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFR  242 (590)
Q Consensus       163 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  242 (590)
                      ...        ......... ..  ...........+++++.++++++.+.+..+   ...+++|+.|++++|.+...  
T Consensus       171 ~~~--------~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--  234 (384)
T d2omza2         171 LAN--------LTTLERLDI-SS--NKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--  234 (384)
T ss_dssp             GTT--------CTTCCEEEC-CS--SCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--
T ss_pred             hcc--------ccccccccc-cc--cccccccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--
Confidence            000        001111111 11  112234556778899999999999885544   25789999999999998873  


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCC
Q 007762          243 LPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGC  322 (590)
Q Consensus       243 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  322 (590)
                      ..+..+++|+.+++++|.+++ ++. +. .+++|++++++++.+++. + .+..++.++.+.+..|.+. .++.  ...+
T Consensus       235 ~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~-~~~~--~~~~  306 (384)
T d2omza2         235 GTLASLTNLTDLDLANNQISN-LAP-LS-GLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLE-DISP--ISNL  306 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCS-CCGG--GGGC
T ss_pred             chhhcccccchhccccCccCC-CCc-cc-ccccCCEeeccCcccCCC-C-ccccccccccccccccccc-cccc--cchh
Confidence            346788999999999999984 333 33 378999999999998843 3 3778899999999999987 4443  2358


Q ss_pred             CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762          323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM  402 (590)
Q Consensus       323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  402 (590)
                      ++++.+++++|++.+..  .+..+++|++|++++|.+++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|
T Consensus       307 ~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         307 KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             TTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred             cccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence            99999999999998753  37789999999999999874 44 58899999999999999986644  899999999999


Q ss_pred             CCC
Q 007762          403 PKN  405 (590)
Q Consensus       403 ~~n  405 (590)
                      ++|
T Consensus       381 ~~N  383 (384)
T d2omza2         381 NDQ  383 (384)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.7e-23  Score=199.43  Aligned_cols=255  Identities=22%  Similarity=0.222  Sum_probs=137.8

Q ss_pred             ccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEc
Q 007762          251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLAL  330 (590)
Q Consensus       251 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  330 (590)
                      +++|++++|.++ .++...+..+++|++|++++|.+....|..|..++.|++|++++|++. .+|...   ...+..|++
T Consensus        33 l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L~~  107 (305)
T d1xkua_          33 TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRV  107 (305)
T ss_dssp             CCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEEC
T ss_pred             CCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhhhc
Confidence            444444444443 333322222444444444444444333444444444444444444444 333322   234444444


Q ss_pred             cCCcCCCccCccccCccccCceeccCcccc--ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCc
Q 007762          331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFV--GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE  408 (590)
Q Consensus       331 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~  408 (590)
                      ..|.+.+.....+.....+..++...+...  ...+..+..+++|+.+++++|.+.. ++..  .+++|++|++++|...
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKIT  184 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCC
Confidence            444444333333333333334444333221  1122344455555666666655542 2222  2355666666666555


Q ss_pred             CCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccc
Q 007762          409 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD  488 (590)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  488 (590)
                      ...+..|..++.++.|++++|.+.                        .++...+.++++|++|+|++|.++ .+|.++.
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSIS------------------------AVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCC------------------------EECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             CCChhHhhcccccccccccccccc------------------------ccccccccccccceeeeccccccc-ccccccc
Confidence            555555555566666666555554                        333344777888999999999988 5677888


Q ss_pred             ccCCCCEEECcCCcccCCCccc------ccCCCCCCEEECcCCccC--CCCccccccC
Q 007762          489 GLSQLSHLILGHNNLEGEVPVQ------LCKLNQLQLLDLSNNNLH--GPIPPCFDNT  538 (590)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~l~~n~l~--~~~p~~~~~l  538 (590)
                      .+++|++|+|++|+++......      ...+++|+.|++++|++.  ...|.+|+-+
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            8999999999999988443223      345678999999999986  3455666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.9e-22  Score=194.42  Aligned_cols=231  Identities=25%  Similarity=0.288  Sum_probs=150.1

Q ss_pred             CCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEc
Q 007762          299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL  378 (590)
Q Consensus       299 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  378 (590)
                      .+++|++++|+++ .++...+..+++|++|++++|.+....+..|..+++|++|++++|++.. +|..  ....++.|++
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          32 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRV  107 (305)
T ss_dssp             TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEEC
T ss_pred             CCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhc
Confidence            3444444444443 3433333334444444444444444334444445555555555555442 2221  1235556666


Q ss_pred             cCCcccccCccccCCCCCccEEECCCCcCc--CCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCC
Q 007762          379 NNNSLSGMIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHG  456 (590)
Q Consensus       379 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  456 (590)
                      .+|.+....+..+.....+..++...+...  ...+..+..+++|+.+++++|.+... +.. .+++|+.|++++|....
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~-~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQG-LPPSLTELHLDGNKITK  185 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSS-CCTTCSEEECTTSCCCE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-Ccc-cCCccCEEECCCCcCCC
Confidence            666665544445555666666666665432  22344566777778888887777643 322 25678888888888755


Q ss_pred             CCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccc
Q 007762          457 QLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFD  536 (590)
Q Consensus       457 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  536 (590)
                      ..+ ..+..++.++.|++++|.+++..+.++.++++|++|+|++|+++ .+|..+..+++|+.|++++|+|+..-+..|.
T Consensus       186 ~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         186 VDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CCh-hHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhcc
Confidence            444 44889999999999999999888899999999999999999998 6788999999999999999999965445555


Q ss_pred             c
Q 007762          537 N  537 (590)
Q Consensus       537 ~  537 (590)
                      .
T Consensus       264 ~  264 (305)
T d1xkua_         264 P  264 (305)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=192.40  Aligned_cols=223  Identities=24%  Similarity=0.224  Sum_probs=147.5

Q ss_pred             EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEcc-CC
Q 007762          303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN-NN  381 (590)
Q Consensus       303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~-~n  381 (590)
                      ++.++..++ ++|..+   .+++++|++++|+++...+..|.++++|++|++++|.+....+..+..++.++.+... .+
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            344444444 455433   2345555565555555444455556666666666666555555555555666665543 33


Q ss_pred             cccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCc
Q 007762          382 SLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKR  460 (590)
Q Consensus       382 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~  460 (590)
                      .+.+..+..|.++++|++|++++|.+....+..+...++|+.+++++|.++++.+..+. ...|+.|++++|.+. .++.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccch
Confidence            44444455566666666666666666555555566666666777776666655555553 456677777777663 5555


Q ss_pred             cccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCC
Q 007762          461 GTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP  530 (590)
Q Consensus       461 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  530 (590)
                      .+|.++++|+.+++++|++++..|.+|..+++|++|++++|++.+..+..|..+++|+.|++++|++...
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            6688888888888888888887888888888888888888888877778888888888888888888754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.5e-23  Score=194.20  Aligned_cols=257  Identities=21%  Similarity=0.204  Sum_probs=156.6

Q ss_pred             EEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc-
Q 007762          253 LLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS-  331 (590)
Q Consensus       253 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~-  331 (590)
                      .++.++..++ .+|..+   ++++++|+|++|.++...+..|.+++.|++|++++|.+. .++...+..+..+..+... 
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence            3455555565 566544   346777777777777555556777777777777777766 5555544455666666543 


Q ss_pred             CCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCC
Q 007762          332 NNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPI  411 (590)
Q Consensus       332 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  411 (590)
                      .+.+....+..+.++++|++|++++|.+....+..+..+++|+.+++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            33444444555555666666666665555444444555555555666555555444445555555555555555555444


Q ss_pred             CcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccC
Q 007762          412 PVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS  491 (590)
Q Consensus       412 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  491 (590)
                      +..|..+++|+++++++|.++                       + +.+..|..+++|+.|++++|.+.+..+.+|+.++
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~-----------------------~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVA-----------------------H-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-----------------------E-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hhhhccccccchhhhhhcccc-----------------------c-cChhHhhhhhhccccccccccccccccccccccc
Confidence            455555555555555555554                       2 3333377788889999999998888888888888


Q ss_pred             CCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762          492 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT  539 (590)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  539 (590)
                      +|++|++++|++...-+. ..-...++......+.+....|..+++.+
T Consensus       226 ~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l~g~~  272 (284)
T d1ozna_         226 ALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD  272 (284)
T ss_dssp             TCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCB
T ss_pred             ccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHHcCCc
Confidence            999999999888744221 11112345555666677766777776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=184.17  Aligned_cols=200  Identities=21%  Similarity=0.207  Sum_probs=162.6

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      ...+.+++.+++.++. +|..+.  +++++|++++|.+.+..+..|.++++|++|++++|+++.. + .+..+++|+.|+
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            4566778888888875 454442  5789999999999866667888999999999999998743 3 457789999999


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN  480 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (590)
                      +++|++. ..+..+..+++|+.|++++|.+.+..+..+. +.+++.|++++|.+. .++...+..+++|+.|++++|+++
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhccccccccc
Confidence            9999987 4566788899999999999988766665543 678899999999884 666666888889999999999998


Q ss_pred             CCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762          481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG  529 (590)
Q Consensus       481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  529 (590)
                      +..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.-
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            877788888899999999999988 788888888899999999988763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-21  Score=182.21  Aligned_cols=176  Identities=24%  Similarity=0.203  Sum_probs=107.8

Q ss_pred             CCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECC
Q 007762          324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP  403 (590)
Q Consensus       324 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  403 (590)
                      ++++|++++|.+.+..+..|..+++|++|++++|.++. ++ .+..+++|++|++++|++.. .+..+..+++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            34444444444444333344444444444444444432 11 22345555555555555542 33445555566666666


Q ss_pred             CCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762          404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS  482 (590)
Q Consensus       404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  482 (590)
                      ++.+....+..+..+.++++|++++|.+....+..+. ++.++.+++++|+++ .++...|..+++|++|+|++|+++ .
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-ccCccccccccccceeecccCCCc-c
Confidence            6655554455555566666666666666554444433 456666666666664 455555888999999999999999 7


Q ss_pred             ccccccccCCCCEEECcCCccc
Q 007762          483 ISDWVDGLSQLSHLILGHNNLE  504 (590)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~  504 (590)
                      +|..+..+++|+.|+|++|++.
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhHCCCCCCCEEEecCCCCC
Confidence            8888888999999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=1.9e-16  Score=155.23  Aligned_cols=291  Identities=28%  Similarity=0.360  Sum_probs=160.3

Q ss_pred             cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762          201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN  280 (590)
Q Consensus       201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  280 (590)
                      ++++|+++++.++ .+|+    ..++|++|++++|.++. +|..   ..+|+.|++++|.++ .++.    ..+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            4666777776665 5553    24567777777766664 2322   346667777776665 3332    134577777


Q ss_pred             ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc
Q 007762          281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV  360 (590)
Q Consensus       281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  360 (590)
                      +++|.++ .+|. ++.+++|++++++++.+. ..+.    ....+..+.+..+....  ...+..++.++.+.+.++...
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cccc-hhhhccceeecccccccc-cccc----ccccccchhhccccccc--cccccccccceeccccccccc
Confidence            7777666 3443 456667777777766655 3222    13445555555444332  233444556666666665544


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-
Q 007762          361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-  439 (590)
Q Consensus       361 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-  439 (590)
                      .. +.   .....+.+...++.+. ..+ .+..++.|+.+++++|.... .+   ....++..+.+.++.+........ 
T Consensus       176 ~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~~~~~~~  245 (353)
T d1jl5a_         176 KL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDLPELPQS  245 (353)
T ss_dssp             SC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             cc-cc---cccccccccccccccc-ccc-cccccccccccccccccccc-cc---ccccccccccccccccccccccccc
Confidence            21 11   1122334444443332 121 23445555666655554432 22   122344445555544432111100 


Q ss_pred             ----------------CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcc
Q 007762          440 ----------------HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL  503 (590)
Q Consensus       440 ----------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  503 (590)
                                      ........++..+.+. .+    ...+++|++|++++|+++ .+|..   +++|++|++++|++
T Consensus       246 l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L  316 (353)
T d1jl5a_         246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHL  316 (353)
T ss_dssp             CCEEECCSSCCSEESCCCTTCCEEECCSSCCS-EE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccchhcccccccCccc-cc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcC
Confidence                            0122334444444432 11    234578999999999998 56654   57899999999999


Q ss_pred             cCCCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762          504 EGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT  538 (590)
Q Consensus       504 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  538 (590)
                      + .+|+.   +++|++|++++|+++ .+|.....+
T Consensus       317 ~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L  346 (353)
T d1jl5a_         317 A-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESV  346 (353)
T ss_dssp             S-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTC
T ss_pred             C-ccccc---cCCCCEEECcCCcCC-CCCcccccc
Confidence            8 66653   468999999999998 566554443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.8e-21  Score=194.70  Aligned_cols=115  Identities=24%  Similarity=0.323  Sum_probs=79.0

Q ss_pred             CCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccccc----CCccc
Q 007762           19 KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS----LPWCM   94 (590)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~   94 (590)
                      +.|+.||++++  ++++.....+...++++++|+|++|.+++.+.+....++..+++|++|||++|.+++.    +...+
T Consensus         2 ~~l~~ld~~~~--~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESC--CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCC--cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            36788999988  5555443343447888999999999887644334445677888899999998887632    22233


Q ss_pred             c-CCCCCcEEEccccccccc----cCCCCccCCCCCcEEECcCCccc
Q 007762           95 A-NMTSLRILYVSSNQLTGS----ISSSPLVHLTSIEELHLSNNHFQ  136 (590)
Q Consensus        95 ~-~l~~L~~L~ls~n~l~~~----~~~~~l~~l~~L~~L~ls~n~~~  136 (590)
                      . ..++|++|++++|.++..    ++. .+..+++|++|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccch
Confidence            2 235788888888887632    222 4567788888888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.9e-21  Score=195.75  Aligned_cols=341  Identities=18%  Similarity=0.103  Sum_probs=170.8

Q ss_pred             hccCCCcccEEEcCCCcCccccchHHhhc----CCCCcEEEccCCCCCCCC----cCCCCCCCcccEEEccCCcCCCCCc
Q 007762          195 FLYHQHDLEYVDLSHMKMNGEFPTWLLEN----NTNLESLFLVNDSLAGPF----RLPIHSHKRLRLLDISNNNFRGHIP  266 (590)
Q Consensus       195 ~l~~~~~L~~L~ls~~~~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~  266 (590)
                      .+..+++|++|++++|.+++.....+...    ..+|++|++++|.+++..    +..+..+++|++|++++|.+.+...
T Consensus        50 ~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~  129 (460)
T d1z7xw1          50 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL  129 (460)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred             HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhh
Confidence            34445555555555555543222222221    234555555555554321    2234455666666666665542222


Q ss_pred             hhhhhc----CCCCcEEEccCceecc----cCCcccCCCCCCcEEEccCcccccc----cchhhhcCCCCCcEEEccCCc
Q 007762          267 VEIGDV----LPGLFSLNISMNALDG----SIPSSFGNMKFLQLLDVTNNQLTGE----IPEHLAVGCVNLEYLALSNNS  334 (590)
Q Consensus       267 ~~~~~~----~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~  334 (590)
                      ..+...    ................    .....+.....++.++++++.....    ....+.........+.+..+.
T Consensus       130 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  209 (460)
T d1z7xw1         130 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  209 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             hhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            222111    1122223322222110    0111223344566666665544321    111111223345556665554


Q ss_pred             CCCcc----CccccCccccCceeccCcccccc-----CCccccCCCCCCEEEccCCcccccC----ccccCCCCCccEEE
Q 007762          335 LEGHM----FSRNFNLTNLKWLQLEGNHFVGE-----IPQSLSKCFVLEGLFLNNNSLSGMI----PRWLGNLTRLQHIM  401 (590)
Q Consensus       335 i~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~  401 (590)
                      +....    ...+...+.++.+++.++.+...     ..........++.+++++|.+....    ...+...+.++.++
T Consensus       210 ~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~  289 (460)
T d1z7xw1         210 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS  289 (460)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            43211    11122345566666666654321     1223344566777777777664321    22344566777777


Q ss_pred             CCCCcCcCCCCcc-----cCCCCCCcEEEcccCcCCCCCCCCC-----CCCcccEEECcCccCCCC----CCccccccCC
Q 007762          402 MPKNHLEGPIPVE-----FCQLDWLQILDISDNNISGSLPSCF-----HPLSIEHVHLSKNMLHGQ----LKRGTFFNYH  467 (590)
Q Consensus       402 L~~n~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~  467 (590)
                      +++|.+.+.....     ......|+.+++++|.++......+     ...+|++|++++|.+..+    +........+
T Consensus       290 l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~  369 (460)
T d1z7xw1         290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS  369 (460)
T ss_dssp             CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             cccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccC
Confidence            7777665322111     1234567777777776653322211     145677888877776321    2222123456


Q ss_pred             CCcEEEcCCCcCCCC----ccccccccCCCCEEECcCCcccCCCccc----cc-CCCCCCEEECcCCccCCCCcccc
Q 007762          468 SLVTLDLSYNRLNGS----ISDWVDGLSQLSHLILGHNNLEGEVPVQ----LC-KLNQLQLLDLSNNNLHGPIPPCF  535 (590)
Q Consensus       468 ~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~p~~~  535 (590)
                      .|++|+|++|.+++.    +.+.+..+++|++|++++|+++......    +. ....|+.|++.+|.+....+..+
T Consensus       370 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             CCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            788888888888753    3455667788889999888887543322    22 23368888888888875444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.9e-15  Score=147.89  Aligned_cols=95  Identities=32%  Similarity=0.373  Sum_probs=57.1

Q ss_pred             CCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCC
Q 007762           46 PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSI  125 (590)
Q Consensus        46 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L  125 (590)
                      .++++|+|+++.++.    +|+    ..++|++|++++|+++ .+|..+   .+|++|++++|.++ .++.  +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~----lp~----~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~--l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSS----LPE----LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD--L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS--C--CTTC
T ss_pred             cCCCEEEeCCCCCCC----CCC----CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh--h--cccc
Confidence            357777777777653    442    2356777777777777 556543   46777777777766 4433  1  1357


Q ss_pred             cEEECcCCccccccCccccccCCCccEEEccCCcc
Q 007762          126 EELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEI  160 (590)
Q Consensus       126 ~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~  160 (590)
                      ++|++++|.+. .++  .+..+++|+.++++++.+
T Consensus       101 ~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         101 EYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc-ccc--chhhhccceeeccccccc
Confidence            77777777665 222  234555566665555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.8e-17  Score=149.29  Aligned_cols=187  Identities=19%  Similarity=0.235  Sum_probs=115.9

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      +.+|+.|++.+|.+...  ..+..+++|++|++++|.+.+..  .+..+++++++++++|.++. + ..+..+++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccc
Confidence            44556666666655532  23455666666666666655332  25566666666666666552 2 2455666677777


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG  481 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  481 (590)
                      ++++...+  ...+...+.++.+.++++.+... .....+++|+.|++++|.+.. .+  .+.++++|+.|++++|++++
T Consensus       114 l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         114 LTSTQITD--VTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--cchhccccchhhhhchhhhhchh-hhhcccccccccccccccccc-ch--hhcccccceecccCCCccCC
Confidence            76666543  22345566667777766666532 223345667777777776632 22  26777888888888888875


Q ss_pred             CccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcC
Q 007762          482 SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN  524 (590)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  524 (590)
                      . + .++++++|++|++++|++++ ++ .+..+++|+.|++++
T Consensus       188 l-~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 I-S-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             C-h-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            3 3 27778888888888888874 33 377888888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3e-17  Score=151.79  Aligned_cols=218  Identities=17%  Similarity=0.198  Sum_probs=109.3

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc
Q 007762          252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS  331 (590)
Q Consensus       252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  331 (590)
                      +.++.++..++ .+|..+   ++++++|++++|.++...+..|.++++|++|++++|.+...++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666665 555543   23666666666666643344566666666666666666544444444445555555544


Q ss_pred             C-CcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCcc-ccCCCCCccEEECCCCcCcC
Q 007762          332 N-NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPR-WLGNLTRLQHIMMPKNHLEG  409 (590)
Q Consensus       332 ~-n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~  409 (590)
                      . +.+....+..+..+++|++++++                        +|.+....+. .+..+..+..+...++.+..
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~------------------------~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLIS------------------------NTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEE------------------------SCCCCSCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             ccccccccccccccccccccccccc------------------------hhhhccccccccccccccccccccccccccc
Confidence            3 33433333444444444444444                        4444322111 12233444444445545443


Q ss_pred             CCCcccCCCC-CCcEEEcccCcCCCCCCCCCCCCcccEEE-CcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762          410 PIPVEFCQLD-WLQILDISDNNISGSLPSCFHPLSIEHVH-LSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV  487 (590)
Q Consensus       410 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  487 (590)
                      ..+..|..++ .++.|++++|+++...+..+....+.++. +++|.+ ..++...|.++++|++|++++|+++...+..|
T Consensus       143 i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l-~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         143 IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC-CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSC
T ss_pred             ccccccccccccceeeecccccccccccccccchhhhcccccccccc-ccccHHHhcCCCCCCEEECCCCcCCccCHHHH
Confidence            3344454443 56667777777664444444444433332 233334 24444445555556666665555553333344


Q ss_pred             cccCCCCEEEC
Q 007762          488 DGLSQLSHLIL  498 (590)
Q Consensus       488 ~~l~~L~~L~L  498 (590)
                      .++++|+++++
T Consensus       222 ~~l~~L~~l~~  232 (242)
T d1xwdc1         222 ENLKKLRARST  232 (242)
T ss_dssp             TTCCEEESSSE
T ss_pred             cCCcccccCcC
Confidence            44444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.5e-17  Score=152.29  Aligned_cols=216  Identities=18%  Similarity=0.145  Sum_probs=123.8

Q ss_pred             cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccC-CccccCCCCCCEEEcc
Q 007762          301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI-PQSLSKCFVLEGLFLN  379 (590)
Q Consensus       301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~  379 (590)
                      ++++.++..++ .+|..+   .+++++|++++|.+....+..|.++++|++|++++|.+...+ +..|.+++.++.+.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666665 666544   246677777777776555556667777777777777665433 3456677777777765


Q ss_pred             C-CcccccCccccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCCCCCCC--CCcccEEECcCccCC
Q 007762          380 N-NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFH--PLSIEHVHLSKNMLH  455 (590)
Q Consensus       380 ~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~  455 (590)
                      . +.+....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+.  ...++.+++++|.++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 456556666777788888888888777643222 233345555555556566544444433  234556666666663


Q ss_pred             CCCCccccccCCCCcE-EEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEEC
Q 007762          456 GQLKRGTFFNYHSLVT-LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL  522 (590)
Q Consensus       456 ~~~~~~~~~~~~~L~~-L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  522 (590)
                       .++...+. .++++. +++++|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus       167 -~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         167 -EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             -EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             -cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence             44444333 233333 334555565433444566666666666666666333334555555544444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.5e-16  Score=142.00  Aligned_cols=199  Identities=19%  Similarity=0.268  Sum_probs=157.8

Q ss_pred             CcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762          325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK  404 (590)
Q Consensus       325 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  404 (590)
                      +..++++.+++.+..  ....+.+|+.|++.+|.+.+ + ..+..+++|+.|++++|.+++..  .+..+++++.+++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccc
Confidence            344556666666533  44568899999999999884 4 35889999999999999998654  389999999999999


Q ss_pred             CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762          405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS  484 (590)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  484 (590)
                      |.++. + ..+..+++|+.++++++...+. +.....+.+..+.++++.+....   .+..+++|+.|++++|.+++.. 
T Consensus        95 n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~-  167 (227)
T d1h6ua2          95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLT-  167 (227)
T ss_dssp             CCCSC-C-GGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCG-
T ss_pred             ccccc-c-cccccccccccccccccccccc-chhccccchhhhhchhhhhchhh---hhccccccccccccccccccch-
Confidence            98873 3 3588999999999999988743 33445788999999999874322   2778899999999999998543 


Q ss_pred             ccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCcc
Q 007762          485 DWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLH  541 (590)
Q Consensus       485 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~  541 (590)
                       .+.++++|++|++++|++++ ++ .+..+++|++|++++|++++ +|+ +++++.+
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L  219 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNL  219 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTC
T ss_pred             -hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCC
Confidence             38889999999999999985 44 48899999999999999995 442 5555433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.6e-16  Score=140.48  Aligned_cols=164  Identities=23%  Similarity=0.373  Sum_probs=93.5

Q ss_pred             cccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEc
Q 007762          347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI  426 (590)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  426 (590)
                      .+|++|++++|.+... + .+..+++|+.|++++|++++..  .+..+++|+.|++++|++++ ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            3444444444444321 1 2344555555555555554321  23445555555555555542 22 3455555555555


Q ss_pred             ccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCC
Q 007762          427 SDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE  506 (590)
Q Consensus       427 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  506 (590)
                      ++|.+. .++....++.++.+++++|.+++ .+  .+..+++|+.+++++|++++..+  +.++++|++|++++|+++ .
T Consensus       120 ~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         120 EHNGIS-DINGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             TTSCCC-CCGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-B
T ss_pred             cccccc-ccccccccccccccccccccccc-cc--ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCC-C
Confidence            555544 22223334555555555555532 11  25567788888888888875432  777888888888888887 4


Q ss_pred             CcccccCCCCCCEEECcC
Q 007762          507 VPVQLCKLNQLQLLDLSN  524 (590)
Q Consensus       507 ~~~~~~~l~~L~~L~l~~  524 (590)
                      +| .+..+++|+.|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            54 578888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.3e-16  Score=136.55  Aligned_cols=161  Identities=24%  Similarity=0.313  Sum_probs=74.0

Q ss_pred             ccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEE
Q 007762          346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD  425 (590)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  425 (590)
                      +.++++|+++++.+.. + ..+..+++|++|++++|++++..  .+.++++|+.|++++|.+.. ++ .+..+++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccccc
Confidence            3444555555554442 1 12444555555555555554322  24555555555555555442 12 244555555555


Q ss_pred             cccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762          426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG  505 (590)
Q Consensus       426 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (590)
                      +++|.+... +....+++|+.+++++|.+. .++  .+..+++|+.|++++|.+++..  .++++++|++|++++|++++
T Consensus       113 l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITDI-DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc-cccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            555554421 11222334444444444431 221  1444555555555555555321  24455555555555555542


Q ss_pred             CCcccccCCCCCCEE
Q 007762          506 EVPVQLCKLNQLQLL  520 (590)
Q Consensus       506 ~~~~~~~~l~~L~~L  520 (590)
                       ++ .+..+++|+.|
T Consensus       187 -i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 -IS-VLAKLTNLESL  199 (199)
T ss_dssp             -CG-GGGGCTTCSEE
T ss_pred             -Cc-cccCCCCCCcC
Confidence             22 34455555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.1e-15  Score=135.44  Aligned_cols=165  Identities=21%  Similarity=0.276  Sum_probs=114.0

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      +.+|++|++++|.+....  .+..+++|++|++++|++++. + .+..+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            345666666666665422  255567777777777776643 2 24567777777777777764 22 467777777777


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG  481 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  481 (590)
                      +++|.+..  ...+..+++++.+++++|.+++ .+....+++|+.+++++|.+. .++.  +.++++|+.|++++|.+++
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~-~i~~--l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc--cccccccccccccccccccccc-ccccccccccccccccccccc-cccc--ccCCCCCCEEECCCCCCCC
Confidence            77777652  2356677778888887777763 333334677888888888774 3432  7788999999999999984


Q ss_pred             CccccccccCCCCEEECcC
Q 007762          482 SISDWVDGLSQLSHLILGH  500 (590)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~  500 (590)
                       ++ .+.++++|++|+|++
T Consensus       193 -l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEccC
Confidence             44 588999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=5.3e-15  Score=131.53  Aligned_cols=161  Identities=24%  Similarity=0.311  Sum_probs=101.7

Q ss_pred             CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762          322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM  401 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  401 (590)
                      ++++++|++++|.+...  ..+..+++|++|++++|++++..  .+.++++|++|++++|.+... + .+.++++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-cccccccccccc
Confidence            44555566655555432  23445666666666666665332  255666666666666665532 2 356666777777


Q ss_pred             CCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCC
Q 007762          402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG  481 (590)
Q Consensus       402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  481 (590)
                      ++++....  ...+..+++|+.|++++|.+. .++....+++++.|++.+|.++ .++  .+.++++|+.|++++|++++
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~l~-~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVT-DLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhc-cccccccccccccccccccccc-CCc--cccCCCCCCEEECCCCCCCC
Confidence            77666553  234566677777777777665 2333444667777777777764 333  27888999999999999985


Q ss_pred             CccccccccCCCCEE
Q 007762          482 SISDWVDGLSQLSHL  496 (590)
Q Consensus       482 ~~~~~~~~l~~L~~L  496 (590)
                       ++ .+.++++|++|
T Consensus       187 -i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 -IS-VLAKLTNLESL  199 (199)
T ss_dssp             -CG-GGGGCTTCSEE
T ss_pred             -Cc-cccCCCCCCcC
Confidence             33 47888898876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=5.2e-16  Score=137.34  Aligned_cols=161  Identities=20%  Similarity=0.284  Sum_probs=90.4

Q ss_pred             CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCC-CcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcC
Q 007762          374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPI-PVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSK  451 (590)
Q Consensus       374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~  451 (590)
                      +.++.++++++ .+|..+.  +++++|+|++|.+.+.+ +..|..+++|+.|++++|.+....+..+. .+.|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555555 3344332  45666666666665422 34456666666666666666554444433 44455555555


Q ss_pred             ccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762          452 NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI  531 (590)
Q Consensus       452 n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  531 (590)
                      |++. .+++.+|.++++|++|+|++|.|++..+.+|..+++|++|+|++|++.......+ -...++.+.+..+.++...
T Consensus        88 N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCS
T ss_pred             cccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCC
Confidence            5552 4555556667777777777777776666667777777777777777663322111 1123445556666666556


Q ss_pred             ccccccCC
Q 007762          532 PPCFDNTT  539 (590)
Q Consensus       532 p~~~~~l~  539 (590)
                      |..+++++
T Consensus       166 p~~l~~~~  173 (192)
T d1w8aa_         166 PSKVRDVQ  173 (192)
T ss_dssp             STTTTTSB
T ss_pred             ChhhcCCE
Confidence            65555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=3e-16  Score=138.89  Aligned_cols=128  Identities=23%  Similarity=0.311  Sum_probs=81.2

Q ss_pred             cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCC-ccCccccCccccCceeccCccccccCCccccCCCCCCEEEcc
Q 007762          301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG-HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  379 (590)
Q Consensus       301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  379 (590)
                      +.++.+++.++ .+|..+   .+++++|++++|.++. .....|..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35666666666 666544   3466666666666654 234445566666666666666665556666666666666666


Q ss_pred             CCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762          380 NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  432 (590)
Q Consensus       380 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  432 (590)
                      +|++....+..|.++++|++|+|++|++....+..|..+++|++|++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            66666655666666666666666666666555666666666666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.5e-16  Score=146.91  Aligned_cols=256  Identities=18%  Similarity=0.191  Sum_probs=143.8

Q ss_pred             cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc
Q 007762          252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS  331 (590)
Q Consensus       252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  331 (590)
                      +++|++++.+.......+..  .....+.+......... .......+|++|+++++.+.......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            36788877665222222322  24566666666554222 2333456788888888887655445556678888888888


Q ss_pred             CCcCCCccCccccCccccCceeccCcc-cccc-CCccccCCCCCCEEEccCCc-ccccC-cccc-CCCCCccEEECCCCc
Q 007762          332 NNSLEGHMFSRNFNLTNLKWLQLEGNH-FVGE-IPQSLSKCFVLEGLFLNNNS-LSGMI-PRWL-GNLTRLQHIMMPKNH  406 (590)
Q Consensus       332 ~n~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~n~-~~~~~-~~~~-~~l~~L~~L~L~~n~  406 (590)
                      +|.+.+.....+..+++|++|++++|. +++. +...+..+++|++|++++|. +++.. ...+ ..+++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            887776666666677778888777753 3211 11223456777777777653 22111 1112 223566666666542


Q ss_pred             --CcCC-CCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCC-cCCCC
Q 007762          407 --LEGP-IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN-RLNGS  482 (590)
Q Consensus       407 --~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~  482 (590)
                        +.+. +...+..+++|++|++++|..                      +++..... +..+++|++|++++| .+++.
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~----------------------itd~~~~~-l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVM----------------------LKNDCFQE-FFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTT----------------------CCGGGGGG-GGGCTTCCEEECTTCTTCCGG
T ss_pred             cccccccccccccccccccccccccccC----------------------CCchhhhh-hcccCcCCEEECCCCCCCChH
Confidence              2111 111223445555555555431                      11122222 556777888888875 56655


Q ss_pred             ccccccccCCCCEEECcCCcccCC-CcccccCCCCCCEEECcCCccCCCCcccccc
Q 007762          483 ISDWVDGLSQLSHLILGHNNLEGE-VPVQLCKLNQLQLLDLSNNNLHGPIPPCFDN  537 (590)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  537 (590)
                      ....++.+++|++|++++| ++.. ++.....+|+|+   +..+++++..|+.+.+
T Consensus       217 ~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         217 TLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            5556777788888888877 3322 222234455543   4667777666665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=144.08  Aligned_cols=129  Identities=18%  Similarity=0.161  Sum_probs=83.6

Q ss_pred             cEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEcc
Q 007762          203 EYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNIS  282 (590)
Q Consensus       203 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  282 (590)
                      +++|+++..+.......++.  ..+..+.+........... .....+|++|+++++.+++.....+...+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            47888887775444444432  2455666655544432222 23456889999998887654445555567889999998


Q ss_pred             CceecccCCcccCCCCCCcEEEccCc-ccccccchhhhcCCCCCcEEEccCCc
Q 007762          283 MNALDGSIPSSFGNMKFLQLLDVTNN-QLTGEIPEHLAVGCVNLEYLALSNNS  334 (590)
Q Consensus       283 ~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~n~  334 (590)
                      +|.+++..+..++.+++|++|+++++ .+++..-..+...+++|++|++++|.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc
Confidence            88877666777788888888888885 34432222334457788888887763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.1e-14  Score=119.88  Aligned_cols=127  Identities=20%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             CCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcE
Q 007762          392 GNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVT  471 (590)
Q Consensus       392 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  471 (590)
                      .++.++++|+|++|++.. ++..+..+++|++|++++|.++.. +....+++|++|++++|.+ ..++...+..+++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccc-cCCCcccccccccccc
Confidence            344445555555555542 233334455555555555555422 2222344555555555555 2455554667788888


Q ss_pred             EEcCCCcCCCCcc-ccccccCCCCEEECcCCcccCCC---cccccCCCCCCEEE
Q 007762          472 LDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEV---PVQLCKLNQLQLLD  521 (590)
Q Consensus       472 L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  521 (590)
                      |++++|.++.... ..+..+++|++|++++|+++...   +..+..+|+|+.||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888874322 45777888888888888887332   12467788888876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.4e-14  Score=120.96  Aligned_cols=131  Identities=18%  Similarity=0.231  Sum_probs=103.8

Q ss_pred             CCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcc
Q 007762           14 GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWC   93 (590)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~   93 (590)
                      .|.++.++++|++++|+|   ..++..+. .+++|++|++++|.+..    +  ..|..+++|++|++++|.++...+..
T Consensus        13 ~~~n~~~lr~L~L~~n~I---~~i~~~~~-~l~~L~~L~Ls~N~i~~----l--~~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKI---PVIENLGA-TLDQFDAIDFSDNEIRK----L--DGFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             EEECTTSCEEEECTTSCC---CSCCCGGG-GTTCCSEEECCSSCCCE----E--CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             hccCcCcCcEEECCCCCC---CccCcccc-ccccCCEEECCCCCCCc----c--CCcccCcchhhhhcccccccCCCccc
Confidence            488899999999999966   45554444 88999999999999864    4  35889999999999999998655556


Q ss_pred             ccCCCCCcEEEccccccccccCC-CCccCCCCCcEEECcCCccccccC--ccccccCCCccEEEc
Q 007762           94 MANMTSLRILYVSSNQLTGSISS-SPLVHLTSIEELHLSNNHFQIPIS--LEPLFNHSRLKVFWA  155 (590)
Q Consensus        94 ~~~l~~L~~L~ls~n~l~~~~~~-~~l~~l~~L~~L~ls~n~~~~~~~--~~~l~~l~~L~~l~l  155 (590)
                      +..+++|++|++++|.++ .++. ..+..+++|++|++++|.++....  ...+..+++|+.|+.
T Consensus        83 ~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          83 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccccceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            678999999999999987 5443 357889999999999998863322  134677888888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=2.5e-15  Score=146.48  Aligned_cols=259  Identities=17%  Similarity=0.194  Sum_probs=131.5

Q ss_pred             cchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc----------cCCccccCCCCCcEEEcc
Q 007762           37 FLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG----------SLPWCMANMTSLRILYVS  106 (590)
Q Consensus        37 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~----------~~~~~~~~l~~L~~L~ls  106 (590)
                      +...+. ....|+.|+|++|.++..+.......+...++|+.|+++++....          .+...+..+++|++|+++
T Consensus        23 l~~~L~-~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHh-hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            334444 567777777777776654444444556667777777777654321          112334456677777777


Q ss_pred             ccccccc----cCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEec
Q 007762          107 SNQLTGS----ISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSL  182 (590)
Q Consensus       107 ~n~l~~~----~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  182 (590)
                      +|.+...    +.. .+..+++|++|++++|.+..... ..+..                             .+..+. 
T Consensus       102 ~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~-~~l~~-----------------------------~l~~~~-  149 (344)
T d2ca6a1         102 DNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAG-AKIAR-----------------------------ALQELA-  149 (344)
T ss_dssp             SCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHH-HHHHH-----------------------------HHHHHH-
T ss_pred             ccccccccccchhh-hhcccccchheeccccccccccc-ccccc-----------------------------cccccc-
Confidence            7765421    111 23345667777777665531100 00000                             000000 


Q ss_pred             cCCCCCCCcCChhccCCCcccEEEcCCCcCccccchH---HhhcCCCCcEEEccCCCCCCC-----CcCCCCCCCcccEE
Q 007762          183 SSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTW---LLENNTNLESLFLVNDSLAGP-----FRLPIHSHKRLRLL  254 (590)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L  254 (590)
                               ........+.|+.+.++++.+.......   .+..++.|+.|+++.|.+...     ....+..+++|+.|
T Consensus       150 ---------~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L  220 (344)
T d2ca6a1         150 ---------VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL  220 (344)
T ss_dssp             ---------HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred             ---------cccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccc
Confidence                     0001122334555555555443222111   123445555555555554431     12334556667777


Q ss_pred             EccCCcCCCCCchhh---hhcCCCCcEEEccCceeccc----CCcccC--CCCCCcEEEccCcccccc----cchhhhcC
Q 007762          255 DISNNNFRGHIPVEI---GDVLPGLFSLNISMNALDGS----IPSSFG--NMKFLQLLDVTNNQLTGE----IPEHLAVG  321 (590)
Q Consensus       255 ~l~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~~~~~----~~~~l~--~l~~L~~L~l~~n~~~~~----~~~~~~~~  321 (590)
                      ++++|.++......+   ...+++|++|++++|.+++.    +...+.  ..+.|++|++++|.+...    +...+...
T Consensus       221 ~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~  300 (344)
T d2ca6a1         221 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  300 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHcc
Confidence            777766543221111   12256777777777766532    222222  235688888888877633    22333234


Q ss_pred             CCCCcEEEccCCcCCC
Q 007762          322 CVNLEYLALSNNSLEG  337 (590)
Q Consensus       322 ~~~L~~L~l~~n~i~~  337 (590)
                      +++|++|++++|.+..
T Consensus       301 ~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         301 MPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCEEECTTSBSCT
T ss_pred             CCCCCEEECCCCcCCC
Confidence            6778888888887754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.4e-13  Score=109.84  Aligned_cols=87  Identities=30%  Similarity=0.489  Sum_probs=42.2

Q ss_pred             ccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCC
Q 007762           70 LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSR  149 (590)
Q Consensus        70 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~  149 (590)
                      +..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++.  +..+++|++|++++|.+........+..+++
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            444555555555555554 34444455555555555555554 3332  4445555555555555442222334445555


Q ss_pred             ccEEEccCCcc
Q 007762          150 LKVFWAKNNEI  160 (590)
Q Consensus       150 L~~l~l~~~~~  160 (590)
                      |+.+++++|++
T Consensus        92 L~~L~l~~N~i  102 (124)
T d1dcea3          92 LVLLNLQGNSL  102 (124)
T ss_dssp             CCEEECTTSGG
T ss_pred             CCEEECCCCcC
Confidence            55555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=1.1e-13  Score=134.50  Aligned_cols=193  Identities=18%  Similarity=0.137  Sum_probs=102.3

Q ss_pred             CChhccCCCcccEEEcCCCcCccccchHH---hhcCCCCcEEEccCCCCCCCC----------cCCCCCCCcccEEEccC
Q 007762          192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWL---LENNTNLESLFLVNDSLAGPF----------RLPIHSHKRLRLLDISN  258 (590)
Q Consensus       192 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~----------~~~~~~~~~L~~L~l~~  258 (590)
                      +...+.....|+.|++++|.+..+....+   +...++|+.++++++......          ...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            44556778889999999988765544443   245678888888776543211          12244567788888887


Q ss_pred             CcCCCCCchhhh---hcCCCCcEEEccCceecccCCc-------------ccCCCCCCcEEEccCcccccccchh---hh
Q 007762          259 NNFRGHIPVEIG---DVLPGLFSLNISMNALDGSIPS-------------SFGNMKFLQLLDVTNNQLTGEIPEH---LA  319 (590)
Q Consensus       259 n~l~~~~~~~~~---~~~~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~l~~n~~~~~~~~~---~~  319 (590)
                      |.+++.....+.   ...++|++|++++|.+......             .....+.|+.+.+++|.+.......   ..
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            777644332221   2256777777777765421000             0123445666666666554221111   11


Q ss_pred             cCCCCCcEEEccCCcCCCc-----cCccccCccccCceeccCcccccc----CCccccCCCCCCEEEccCCccc
Q 007762          320 VGCVNLEYLALSNNSLEGH-----MFSRNFNLTNLKWLQLEGNHFVGE----IPQSLSKCFVLEGLFLNNNSLS  384 (590)
Q Consensus       320 ~~~~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~  384 (590)
                      ..++.++.|++++|.+...     ....+..+++|+.|++++|.++..    +...+..+++|++|++++|.++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            2245566666666655421     122233445555555555554321    1233344555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.5e-12  Score=105.09  Aligned_cols=118  Identities=26%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCcc
Q 007762          374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNM  453 (590)
Q Consensus       374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  453 (590)
                      |+|++++|.++.. + .++.+++|++|++++|.+. .+|..+..+++|+.|++++|.++                     
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~---------------------   56 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---------------------   56 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---------------------
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc---------------------
Confidence            3566666666522 2 3556666666666666665 34555666666666666666654                     


Q ss_pred             CCCCCCccccccCCCCcEEEcCCCcCCCCc-cccccccCCCCEEECcCCcccCC---CcccccCCCCCCEE
Q 007762          454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGE---VPVQLCKLNQLQLL  520 (590)
Q Consensus       454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L  520 (590)
                         .++ . +..+++|+.|++++|.+++.. ...+..+++|++|++++|++++.   ....+..+|+|+.|
T Consensus        57 ---~l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          57 ---NVD-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ---CCG-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ---ccC-c-cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence               222 1 566777777888777777432 24567777888888888877633   12234456777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4e-11  Score=100.87  Aligned_cols=106  Identities=22%  Similarity=0.133  Sum_probs=76.1

Q ss_pred             cEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCC
Q 007762          422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN  501 (590)
Q Consensus       422 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  501 (590)
                      +.++.+++.+...+......++|++|+++++.....++..+|.++++|+.|++++|+++...+..|..+++|++|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            34444444444333333334555566665443224677777899999999999999999877888999999999999999


Q ss_pred             cccCCCcccccCCCCCCEEECcCCccC
Q 007762          502 NLEGEVPVQLCKLNQLQLLDLSNNNLH  528 (590)
Q Consensus       502 ~l~~~~~~~~~~l~~L~~L~l~~n~l~  528 (590)
                      +++ .+|.......+|+.|+|++|++.
T Consensus        91 ~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCc-ccChhhhccccccccccCCCccc
Confidence            998 55555445557999999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=1.3e-13  Score=121.66  Aligned_cols=132  Identities=23%  Similarity=0.284  Sum_probs=79.7

Q ss_pred             cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCC
Q 007762          389 RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYH  467 (590)
Q Consensus       389 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~  467 (590)
                      ..+..+++|++|+|++|.+.. ++ .+..+++|++|++++|.++.. +.... ++.|+.|++++|.++ .++  .+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~-~l~--~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIA-SLS--GIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECC-CHH--HHHHHH
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-ccccccccccccccccccccc-ccc--cccccc
Confidence            345556666666666666653 22 355666666666666666532 22222 345666666666663 332  266677


Q ss_pred             CCcEEEcCCCcCCCCcc-ccccccCCCCEEECcCCcccCCCcc----------cccCCCCCCEEECcCCccC
Q 007762          468 SLVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEVPV----------QLCKLNQLQLLDLSNNNLH  528 (590)
Q Consensus       468 ~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l~~n~l~  528 (590)
                      +|+.|++++|.+++... ..+..+++|++|++++|++....+.          .+..+|+|+.||  +.+++
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            78888888888874322 4577788888888888877643222          155677888765  44554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.9e-11  Score=98.99  Aligned_cols=105  Identities=23%  Similarity=0.197  Sum_probs=64.7

Q ss_pred             cCceeccCccccccCCccccCCCCCCEEEccCC-cccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcc
Q 007762          349 LKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN-SLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS  427 (590)
Q Consensus       349 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  427 (590)
                      .+.++..++.+. ..|..+..+++|+.|+++++ .++...+..|.++++|+.|++++|++....+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555554 34555566667777777654 3665555667777777777777777776666667777777777777


Q ss_pred             cCcCCCCCCCCCCCCcccEEECcCccC
Q 007762          428 DNNISGSLPSCFHPLSIEHVHLSKNML  454 (590)
Q Consensus       428 ~n~l~~~~~~~~~~~~L~~L~l~~n~~  454 (590)
                      +|+++...+..+....|+.|++++|++
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCCcccChhhhccccccccccCCCcc
Confidence            777764444444444444444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=1.4e-12  Score=114.83  Aligned_cols=135  Identities=20%  Similarity=0.219  Sum_probs=105.0

Q ss_pred             CCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccC
Q 007762           17 HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMAN   96 (590)
Q Consensus        17 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~   96 (590)
                      .....+.+++++.. .-...++..+. .+++|++|+|++|.|+.    +.  .+..+++|++|++++|.++ .++..+..
T Consensus        21 ~~~~~~~~~l~~~~-~~i~~l~~sl~-~L~~L~~L~Ls~n~I~~----i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~   91 (198)
T d1m9la_          21 VATEAEKVELHGMI-PPIEKMDATLS-TLKACKHLALSTNNIEK----IS--SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             CCTTCSCEECCBCC-TTCCCCHHHHH-HTTTCCEEECSEEEESC----CC--CHHHHTTCCEEECCEEEEC-SCSSHHHH
T ss_pred             cccccceeeeeccc-CchhhhhhHHh-cccccceeECcccCCCC----cc--cccCCccccChhhcccccc-cccccccc
Confidence            34456667776542 11245566777 89999999999999865    53  5888999999999999998 56665666


Q ss_pred             CCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCccccc
Q 007762           97 MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE  163 (590)
Q Consensus        97 l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  163 (590)
                      +++|++|++++|.++ .++.  +..+++|++|++++|.+........+..+++|+.|++++|++...
T Consensus        92 ~~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          92 ADTLEELWISYNQIA-SLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHCCEEECSEEECC-CHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccccccc-cccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            678999999999998 5543  788899999999999987433345788999999999999987544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.4e-08  Score=83.15  Aligned_cols=63  Identities=24%  Similarity=0.129  Sum_probs=40.7

Q ss_pred             cccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCc-------ccccCCCCCCEEECcCCcc
Q 007762          463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-------VQLCKLNQLQLLDLSNNNL  527 (590)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l  527 (590)
                      +..+++|+.|++++|.++...+-.+....+|++|++++|++.....       ..+..+|+|+.||  +.++
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence            5567778888888888875433334444567888888888775433       2355678888765  4444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=6e-07  Score=75.67  Aligned_cols=116  Identities=10%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             CCCCCCCeEeCcCCcCccccc----cchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccccc--
Q 007762           16 PHFKSLELLDMECTRIALNTS----FLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS--   89 (590)
Q Consensus        16 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--   89 (590)
                      .+.+.|+.|+|++++ .+...    +...+. ..++|++|+|++|.+++.+.......+...+.|++|+|++|.+.+.  
T Consensus        12 ~n~~~L~~L~L~~~~-~i~~~~~~~l~~~L~-~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          12 EDDTDLKEVNINNMK-RVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             TTCSSCCEEECTTCC-SSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             hCCCCCcEEEeCCCC-CCCHHHHHHHHHHHh-hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            456788888888642 23322    223333 5567888888888776654445555666677788888888877642  


Q ss_pred             --CCccccCCCCCcEEEcccccccc-------ccCCCCccCCCCCcEEECcCCc
Q 007762           90 --LPWCMANMTSLRILYVSSNQLTG-------SISSSPLVHLTSIEELHLSNNH  134 (590)
Q Consensus        90 --~~~~~~~l~~L~~L~ls~n~l~~-------~~~~~~l~~l~~L~~L~ls~n~  134 (590)
                        +..++...+.|++|++++|.+..       .+.. .+...++|+.|+++.+.
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~-~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHH-HHHhCCCccEeeCcCCC
Confidence              23345566777777777664330       1111 23445666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=6.2e-07  Score=75.15  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=64.8

Q ss_pred             hHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCC--
Q 007762           39 QIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISS--  116 (590)
Q Consensus        39 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~--  116 (590)
                      ..++..+++|++|+|++|.++.  +......+..+++|+.|+|++|.|+...+..+....+|++|++++|.+......  
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~--l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCC--CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             HHHHHhCCCCCEeeCCCccccC--CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            4444489999999999999976  111234567899999999999999853333344556799999999998733221  


Q ss_pred             ----CCccCCCCCcEEE
Q 007762          117 ----SPLVHLTSIEELH  129 (590)
Q Consensus       117 ----~~l~~l~~L~~L~  129 (590)
                          ..+..+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                1256789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=4.3e-06  Score=70.26  Aligned_cols=119  Identities=18%  Similarity=0.207  Sum_probs=82.4

Q ss_pred             HhhhcCCCCcEEecCCC-CCCCCCCCCCcccccCCCCCcEEEeecccccc----cCCccccCCCCCcEEEccccccccc-
Q 007762           40 IISESMPSLKYLSLSDS-TLGTNSSKILDRGLCSLVHLQELYIYNNDLRG----SLPWCMANMTSLRILYVSSNQLTGS-  113 (590)
Q Consensus        40 ~~~~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~ls~n~l~~~-  113 (590)
                      .+....++|+.|+|+++ .++..+......++...++|++|+|++|.+.+    .+...+...+.|++|++++|.++.. 
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence            34446789999999975 46654333344677888999999999998875    3334555678999999999988732 


Q ss_pred             ---cCCCCccCCCCCcEEECcCCcccc--cc----CccccccCCCccEEEccCCc
Q 007762          114 ---ISSSPLVHLTSIEELHLSNNHFQI--PI----SLEPLFNHSRLKVFWAKNNE  159 (590)
Q Consensus       114 ---~~~~~l~~l~~L~~L~ls~n~~~~--~~----~~~~l~~l~~L~~l~l~~~~  159 (590)
                         +.. .+...+.|++|++++|.+..  ..    -...+...+.|+.++++.+.
T Consensus        89 ~~~l~~-aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          89 LARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHH-HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence               222 46677899999999886431  11    12344556788888776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.49  E-value=5.4e-06  Score=69.65  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             CCCCCCCeEeCcCCcCccccc----cchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc---
Q 007762           16 PHFKSLELLDMECTRIALNTS----FLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG---   88 (590)
Q Consensus        16 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~---   88 (590)
                      .+.+.|+.|+++++. .+...    +...+. ..++|++|++++|.++..+.......+...+.++.+++++|.+..   
T Consensus        14 ~~~~~L~~L~L~~~~-~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          14 NNDPDLEEVNLNNIM-NIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TTCTTCCEEECTTCT-TCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             hcCCCCcEEEcCCCC-CCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            455666666666531 22222    222222 456666666666666554333333445555666666666665543   


Q ss_pred             -cCCccccCCCCCcEEEc
Q 007762           89 -SLPWCMANMTSLRILYV  105 (590)
Q Consensus        89 -~~~~~~~~l~~L~~L~l  105 (590)
                       .+..++...+.|+.+++
T Consensus        92 ~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          92 LALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHHhCccccEEee
Confidence             12234444555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.24  E-value=1.3e-05  Score=67.21  Aligned_cols=120  Identities=19%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             hHhhhcCCCCcEEecCC-CCCCCCCCCCCcccccCCCCCcEEEeeccccccc----CCccccCCCCCcEEEccccccccc
Q 007762           39 QIISESMPSLKYLSLSD-STLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS----LPWCMANMTSLRILYVSSNQLTGS  113 (590)
Q Consensus        39 ~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~ls~n~l~~~  113 (590)
                      ..+....+.|++|++++ +.++..+......++..+++|++|++++|.+...    +...+...+.++.+++++|.+...
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            33444779999999998 4576644444556778899999999999988652    334556779999999999987622


Q ss_pred             ----cCCCCccCCCCCcEEECc--CCcccccc---CccccccCCCccEEEccCCc
Q 007762          114 ----ISSSPLVHLTSIEELHLS--NNHFQIPI---SLEPLFNHSRLKVFWAKNNE  159 (590)
Q Consensus       114 ----~~~~~l~~l~~L~~L~ls--~n~~~~~~---~~~~l~~l~~L~~l~l~~~~  159 (590)
                          +.. .+...++|+.++++  +|.+....   -...+...+.|+.|++..+.
T Consensus        90 g~~~l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hHHHHHH-HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                222 46677889987665  45554211   12345678888888886654