Citrus Sinensis ID: 007766
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 590 | 2.2.26 [Sep-21-2011] | |||||||
| P37662 | 402 | Inner membrane protein Yh | N/A | no | 0.257 | 0.378 | 0.288 | 5e-05 | |
| Q6CGU8 | 486 | Probable transporter MCH1 | no | no | 0.359 | 0.436 | 0.245 | 0.0007 |
| >sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12) GN=yhjX PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 349 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD---TSIYVSMISIW 405
+D+TL +++ K + +L + A SGL VI I QSL + D + V++ISI
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIA 262
Query: 406 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSY 465
N GR+ G S+ I R R + + ++ A L +A + V ++
Sbjct: 263 NLSGRLVLGILSDKIAR----IRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNF 318
Query: 466 GAHWAIVPAAASELFGL----KSFGALYNFLTLASPAGSLIFS 504
G + P+ SE FGL K++G +Y + S GS+I S
Sbjct: 319 GGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIAS 361
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Escherichia coli (strain K12) (taxid: 83333) |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function description |
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Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 32/244 (13%)
Query: 320 RIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTV 379
R A A + AE + GP E TL + L V G
Sbjct: 234 RTAESMASELRKKAEASTDCNC-DGPGH-EGATLKEFFTDKTAWLFLLCFVFIGGPFEMF 291
Query: 380 IDNLGQICQSLGY--ADT---SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV 434
+N+G I ++ AD+ S +VS+ + ++ + R+ G+ SEA+ + RPV ++V
Sbjct: 292 QNNMGAILDTVTVENADSPSFSTHVSLFATFSTVSRLVVGFSSEAMESHVS--RPVLLSV 349
Query: 435 AQVVMAFALLYYAIG----WPGEIY--VTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL 488
+V A L G + Y V T++ G SYG+ + +VP ++++G+ + G +
Sbjct: 350 IALVAACIHLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTI 409
Query: 489 YNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSIC 548
+ LA GSL + G++ + +YD +E G + + C G C
Sbjct: 410 WGSFILALAVGSLGY-GLLFAKVYDAASEVGVGSM----------------SQVCSGVHC 452
Query: 549 YSIT 552
Y +T
Sbjct: 453 YGLT 456
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 590 | ||||||
| 255540211 | 589 | conserved hypothetical protein [Ricinus | 0.989 | 0.991 | 0.772 | 0.0 | |
| 224122040 | 591 | predicted protein [Populus trichocarpa] | 0.986 | 0.984 | 0.767 | 0.0 | |
| 147789864 | 590 | hypothetical protein VITISV_001273 [Viti | 0.989 | 0.989 | 0.738 | 0.0 | |
| 359491100 | 588 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.993 | 0.738 | 0.0 | |
| 225451469 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.988 | 0.692 | 0.0 | |
| 147853498 | 591 | hypothetical protein VITISV_016786 [Viti | 0.989 | 0.988 | 0.692 | 0.0 | |
| 255536871 | 589 | conserved hypothetical protein [Ricinus | 0.989 | 0.991 | 0.694 | 0.0 | |
| 225451471 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.988 | 0.683 | 0.0 | |
| 226495681 | 596 | nodulin-like protein [Zea mays] gi|19565 | 0.989 | 0.979 | 0.654 | 0.0 | |
| 242082081 | 595 | hypothetical protein SORBIDRAFT_07g02614 | 0.986 | 0.978 | 0.656 | 0.0 |
| >gi|255540211|ref|XP_002511170.1| conserved hypothetical protein [Ricinus communis] gi|223550285|gb|EEF51772.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/590 (77%), Positives = 523/590 (88%), Gaps = 6/590 (1%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M RL ER K+F NNRWLVFVC+MW+QSCAGIGYLFGSISPVIK+ MGYNQR+V++LGVAK
Sbjct: 1 MQRLHERFKAFFNNRWLVFVCAMWVQSCAGIGYLFGSISPVIKSSMGYNQREVAMLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
DLGDSIGFV G E+LP+W+I LIGV QNFVGYGL+WLIV +LP+LPLWVLC+A+FVG
Sbjct: 61 DLGDSIGFVAGALCEVLPIWAILLIGVFQNFVGYGLLWLIVIQKLPALPLWVLCVAVFVG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMIS-ANETSLIFLV 179
TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIY MI+ NE LIF+V
Sbjct: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMINFPNEAWLIFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
AVGPS+VV+A MFI+RP+GGHRQ R SDN+SFL+TY++CL+LAAY+L VL+LED+ +Q
Sbjct: 181 AVGPSMVVIALMFIIRPVGGHRQARPSDNSSFLYTYSICLVLAAYLLGVLILEDVVDVSQ 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQE--EVI 297
+++T+ ++ LII+ILLP+TIPV+LVFF EP VEETLL E K E S Q+ EVI
Sbjct: 241 SLVTLFSIILIILILLPITIPVLLVFFFEPRSQVEETLLPEPEKQEGVNSGQEQDANEVI 300
Query: 298 LSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQAL 357
LSEVEDEKP EV+SLPASER KRIAHLQAKLFQAAAEGAVRVKR+KGPRRGEDFTL QAL
Sbjct: 301 LSEVEDEKPAEVESLPASERHKRIAHLQAKLFQAAAEGAVRVKRKKGPRRGEDFTLLQAL 360
Query: 358 MKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFS 417
+KADFLL+FFSL+LASGSGLTVIDNLGQICQSLGY +TSI+VSMISIWNFLGRVGGGYFS
Sbjct: 361 VKADFLLMFFSLILASGSGLTVIDNLGQICQSLGYTNTSIFVSMISIWNFLGRVGGGYFS 420
Query: 418 EAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS 477
EAI+R FAYPRPVAMAVAQV+MA L YYA+GWPGEIYV ++L+GLSYGAHWAIVPAA S
Sbjct: 421 EAIIRNFAYPRPVAMAVAQVIMAIGLFYYAMGWPGEIYVVSILIGLSYGAHWAIVPAAVS 480
Query: 478 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN-GNMLPVSFR 536
ELFGLKSFGALYNFLTL+S AGSLIFSGVIASGIYDYYAEKQA + + N G+ML
Sbjct: 481 ELFGLKSFGALYNFLTLSSTAGSLIFSGVIASGIYDYYAEKQA--IQQLNAGSMLAAHLV 538
Query: 537 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLN 586
++E+ TC+GSICYS+TCGIM+GLCI+AM++SLIVVHRT+SVYAQLYG N
Sbjct: 539 EEESLTCVGSICYSLTCGIMSGLCIVAMILSLIVVHRTRSVYAQLYGKTN 588
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122040|ref|XP_002318735.1| predicted protein [Populus trichocarpa] gi|222859408|gb|EEE96955.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/584 (76%), Positives = 516/584 (88%), Gaps = 2/584 (0%)
Query: 3 RLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDL 62
RL +R K+F N+RWLVFVC+MWIQSCAGIGYLFGSISPVIK+ MGYNQRQV++LGVAKDL
Sbjct: 5 RLHDRFKAFFNDRWLVFVCAMWIQSCAGIGYLFGSISPVIKSTMGYNQRQVAILGVAKDL 64
Query: 63 GDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTN 122
GDSIGFVPG+ EI P+W+I+LIGV+QNFVGYGLVWLIV ++P+LPLWVLC+AIFVGTN
Sbjct: 65 GDSIGFVPGSLCEIFPIWAISLIGVVQNFVGYGLVWLIVAQKVPALPLWVLCVAIFVGTN 124
Query: 123 GETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAV 181
GETYFNT ALVSCVQNFPK+RGPVVGILKGFAGLSGAILTQIY MI S NE SLIF++AV
Sbjct: 125 GETYFNTVALVSCVQNFPKNRGPVVGILKGFAGLSGAILTQIYAMINSPNEASLIFMIAV 184
Query: 182 GPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNV 241
GPS+VV+A MF+VRP+ GHRQ R SDN+SFLFTY+VCL+LAAY+L VL++EDL NQ +
Sbjct: 185 GPSMVVIAIMFVVRPVRGHRQARSSDNSSFLFTYSVCLVLAAYLLGVLIVEDLVNLNQTL 244
Query: 242 LTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSE-DYQEEVILSE 300
LTVL LII++LLP+TIPV+L F++EP PVEE LL ET+K E+SKSE ILSE
Sbjct: 245 LTVLVAVLIILVLLPITIPVLLAFYSEPRHPVEENLLPETDKQESSKSELQIGGSFILSE 304
Query: 301 VEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKA 360
+EDEKP E+D L +ER +RIAHLQAKLFQAAAEGAVR+KRRKGPRRGEDFTL QAL KA
Sbjct: 305 MEDEKPSEMDLLQPTERHRRIAHLQAKLFQAAAEGAVRIKRRKGPRRGEDFTLMQALRKA 364
Query: 361 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAI 420
DFLL+FFSLVLASGSGLTVIDNLGQICQSLGY DTSI+VSMISIWNFLGRVGGGYFSEAI
Sbjct: 365 DFLLMFFSLVLASGSGLTVIDNLGQICQSLGYNDTSIFVSMISIWNFLGRVGGGYFSEAI 424
Query: 421 VRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF 480
+RK+AYPRPVAMAV QVVMA AL YYA+GWPGEIYV ++ +GL YGAHWAIVPA+ASELF
Sbjct: 425 IRKYAYPRPVAMAVVQVVMAVALFYYAMGWPGEIYVLSIFIGLGYGAHWAIVPASASELF 484
Query: 481 GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQET 540
GLKSFGALYNFLTL+SPAGSLIFSGVIASGIYD++A KQAGL +G++ ++++
Sbjct: 485 GLKSFGALYNFLTLSSPAGSLIFSGVIASGIYDHFARKQAGLQQLNSGSLPATHLEEEKS 544
Query: 541 PTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
TC+G CYS+TCGIM+GLCIIA+++SLIVV RTKSVYAQLYGN
Sbjct: 545 LTCVGLECYSLTCGIMSGLCIIAVILSLIVVRRTKSVYAQLYGN 588
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789864|emb|CAN73867.1| hypothetical protein VITISV_001273 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/585 (73%), Positives = 510/585 (87%), Gaps = 1/585 (0%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M+ L E++++FVNNRWLVFVC+MW+QS AGIGYLFGSISPVIK+ MGYNQRQV++LGVAK
Sbjct: 3 MLDLREKVRAFVNNRWLVFVCAMWVQSWAGIGYLFGSISPVIKSAMGYNQRQVAMLGVAK 62
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
DLGDSIGFV G+ E+LP+W I LIGV+QNFVGYG+VWL+VT +LPSLPLWVLC+ IFVG
Sbjct: 63 DLGDSIGFVAGSLCEVLPIWGIMLIGVVQNFVGYGVVWLVVTQKLPSLPLWVLCLCIFVG 122
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISA-NETSLIFLV 179
TNGETYFNT ALVSCVQNFPK+RGPVVGILKGFAGLSGAI+TQIY MI+A N +LIF+V
Sbjct: 123 TNGETYFNTGALVSCVQNFPKNRGPVVGILKGFAGLSGAIITQIYTMINAPNAAALIFMV 182
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
A+GPS+VV+A MFIVRP+GGH+Q+R SD++SFLFT+++CLILAAY+L VLLLEDL +Q
Sbjct: 183 AIGPSMVVIALMFIVRPVGGHKQLRPSDSSSFLFTFSLCLILAAYLLGVLLLEDLVGLSQ 242
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILS 299
++T+L V LI+IILLPV IP++LVFF+ P P EE L E K E+ KSE EEVILS
Sbjct: 243 ALVTLLTVLLIVIILLPVAIPIILVFFSGPIAPSEEAFLPEPQKQESGKSEQDGEEVILS 302
Query: 300 EVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK 359
EVEDEKP EVDSLPASER KRIAHLQAKLFQAAAEGAVRVKR++GPRRGEDFTL QAL+K
Sbjct: 303 EVEDEKPVEVDSLPASERHKRIAHLQAKLFQAAAEGAVRVKRKRGPRRGEDFTLMQALIK 362
Query: 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEA 419
ADF L+F SL+LA+GSGLT+IDN+GQ+C+SLGY+DTS++VSMISIWNFLGRVGGGYFSE+
Sbjct: 363 ADFWLIFVSLLLAAGSGLTIIDNMGQMCESLGYSDTSVFVSMISIWNFLGRVGGGYFSES 422
Query: 420 IVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479
IVR FA+PRPV+MA+ QV+M+ LLYYA+ WPG IYV +VL+GL YGAHWAIVPAAASEL
Sbjct: 423 IVRNFAFPRPVSMAMFQVLMSVGLLYYALAWPGAIYVVSVLIGLGYGAHWAIVPAAASEL 482
Query: 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539
FGLKSFGALYNFLTL+S G+LIFS VIASGIYD+YAEKQA L G M + E
Sbjct: 483 FGLKSFGALYNFLTLSSSIGTLIFSEVIASGIYDHYAEKQAALKQHSLGAMAGLPLGKDE 542
Query: 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
+ +C G ICYSITCG+M+GLC++A+V+SLIVVHRTKSVYA LYG
Sbjct: 543 SLSCEGYICYSITCGVMSGLCLVAVVLSLIVVHRTKSVYANLYGR 587
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491100|ref|XP_002280267.2| PREDICTED: uncharacterized protein LOC100247479 [Vitis vinifera] gi|297734441|emb|CBI15688.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/585 (73%), Positives = 510/585 (87%), Gaps = 1/585 (0%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M+ L E++++FVNNRWLVFVC+MW+QS AGIGYLFGSISPVIK+ MGYNQRQV++LGVAK
Sbjct: 1 MLDLREKVRAFVNNRWLVFVCAMWVQSWAGIGYLFGSISPVIKSAMGYNQRQVAMLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
DLGDSIGFV G+ E+LP+W I LIGV+QNFVGYG+VWL+VT +LPSLPLWVLC+ IFVG
Sbjct: 61 DLGDSIGFVAGSLCEVLPIWGIMLIGVVQNFVGYGVVWLVVTQKLPSLPLWVLCLCIFVG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISA-NETSLIFLV 179
TNGETYFNT ALVSCVQNFPK+RGPVVGILKGFAGLSGAI+TQIY MI+A N +LIF+V
Sbjct: 121 TNGETYFNTGALVSCVQNFPKNRGPVVGILKGFAGLSGAIITQIYTMINAPNAAALIFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
A+GPS+VV+A MFIVRP+GGH+Q+R SD++SFLFT+++CLILAAY+L VLLLEDL +Q
Sbjct: 181 AIGPSMVVIALMFIVRPVGGHKQLRPSDSSSFLFTFSLCLILAAYLLGVLLLEDLVGLSQ 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILS 299
++T+L V LI+IILLPV IP++LVFF+ P P EE L E K E+ KSE EEVILS
Sbjct: 241 ALVTLLTVLLIVIILLPVAIPIILVFFSGPIAPSEEAFLPEPQKQESGKSEQDGEEVILS 300
Query: 300 EVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK 359
EVEDEKP EVDSLPASER KRIAHLQAKLFQAAAEGAVRVKR++GPRRGEDFTL QAL+K
Sbjct: 301 EVEDEKPVEVDSLPASERHKRIAHLQAKLFQAAAEGAVRVKRKRGPRRGEDFTLMQALIK 360
Query: 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEA 419
ADF L+F SL+LA+GSGLT+IDN+GQ+C+SLGY+DTS++VSMISIWNFLGRVGGGYFSE+
Sbjct: 361 ADFWLIFVSLLLAAGSGLTIIDNMGQMCESLGYSDTSVFVSMISIWNFLGRVGGGYFSES 420
Query: 420 IVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479
IVR FA+PRPV+MA+ QV+M+ LLYYA+ WPG IYV +VL+GL YGAHWAIVPAAASEL
Sbjct: 421 IVRNFAFPRPVSMAMFQVLMSVGLLYYALAWPGAIYVVSVLIGLGYGAHWAIVPAAASEL 480
Query: 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539
FGLKSFGALYNFLTL+S G+LIFS VIASGIYD+YAEKQA L G M + E
Sbjct: 481 FGLKSFGALYNFLTLSSSIGTLIFSEVIASGIYDHYAEKQAALKQHSLGAMAGLPLGKDE 540
Query: 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
+ +C G ICYSITCG+M+GLC++A+V+SLIVVHRTKSVYA LYG
Sbjct: 541 SLSCEGYICYSITCGVMSGLCLVAVVLSLIVVHRTKSVYANLYGR 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/588 (69%), Positives = 481/588 (81%), Gaps = 4/588 (0%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M+RLPER ++F+NNRWLVFV +MWIQSCAGIGYLFGS+SPV+K+ + YNQRQ++ LGVAK
Sbjct: 1 MIRLPERFRAFLNNRWLVFVAAMWIQSCAGIGYLFGSLSPVMKSSLNYNQRQIAKLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
D+GDSIGF G+ EILP+W++ L+G LQNF+GYG VWLIVT+R+P+LPLW +CI IFVG
Sbjct: 61 DIGDSIGFWIGSLCEILPLWAVLLVGALQNFIGYGWVWLIVTHRVPTLPLWAICILIFVG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLV 179
TNGETYFNT LVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIY MI S + SL+F+V
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLVFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
AVGP +VV A MFIVRP+GGHRQVR +D+ SF F Y VCL+LAAY++ V+L++DL +
Sbjct: 181 AVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLVQDLVHLSH 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILS 299
V+T+ L ++IL P+ IPV L FF+EP P E LL E K E KSE EVI S
Sbjct: 241 TVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQDATEVIFS 300
Query: 300 EVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK 359
EVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+GP RGEDFTL QAL+K
Sbjct: 301 EVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIK 360
Query: 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEA 419
ADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFLGR+GGGYFSE
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRIGGGYFSEM 420
Query: 420 IVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479
IVR AYPRPVAMA AQV+MA L++A+GWPG +++ T+L+GL YGAHWAIVPAAASEL
Sbjct: 421 IVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---GLLWKYNGNMLPVSFR 536
FGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD AEKQA L + G++
Sbjct: 481 FGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVGSIFSGMLS 540
Query: 537 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
+ P C GSIC+ +T IM+GLCIIA+V+S+++VHRTK VYA LYG
Sbjct: 541 MDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGK 588
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/588 (69%), Positives = 480/588 (81%), Gaps = 4/588 (0%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M+RLPER ++F NNRWLVFV +MWIQSCAGIGYLFGS+SPV+K+ + YNQRQ++ LGVAK
Sbjct: 1 MIRLPERXRAFXNNRWLVFVAAMWIQSCAGIGYLFGSLSPVMKSSLNYNQRQIAKLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
D+GDSIGF G+ EILP+W++ L+G LQNF+GYG VWLIVT+R+P+LPLW +CI IFVG
Sbjct: 61 DIGDSIGFWIGSLCEILPLWAVLLVGALQNFIGYGWVWLIVTHRVPTLPLWAICILIFVG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLV 179
TNGETYFNT LVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIY MI S + SL+F+V
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLVFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
AVGP +VV A MFIVRP+GGHRQVR +D+ SF F Y VCL+LAAY++ V+L++DL +
Sbjct: 181 AVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLVQDLVHLSH 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILS 299
V+T+ L ++IL P+ IPV L FF+EP P E LL E K E KSE EVI S
Sbjct: 241 TVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQDATEVIFS 300
Query: 300 EVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK 359
EVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+GP RGEDFTL QAL+K
Sbjct: 301 EVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIK 360
Query: 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEA 419
ADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFLGR+GGGYFSE
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRIGGGYFSEM 420
Query: 420 IVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479
IVR AYPRPVAMA AQV+MA L++A+GWPG +++ T+L+GL YGAHWAIVPAAASEL
Sbjct: 421 IVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---GLLWKYNGNMLPVSFR 536
FGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD AEKQA L + G++
Sbjct: 481 FGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVGSIFSGMLS 540
Query: 537 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
+ P C GSIC+ +T IM+GLCIIA+V+S+++VHRTK VYA LYG
Sbjct: 541 MDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGK 588
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/586 (69%), Positives = 476/586 (81%), Gaps = 2/586 (0%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M RL ERL +F+NNRWLVFV +MWIQSCAG+GYLFGSISPVIK+ + YNQRQ++ LGVAK
Sbjct: 1 MGRLQERLYAFINNRWLVFVAAMWIQSCAGVGYLFGSISPVIKSSLNYNQRQLASLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
DLGDS+GF+ G+ EILP+W L+G LQN VGYG VWL+VT + P LPLWV+CI IFVG
Sbjct: 61 DLGDSVGFLAGSLSEILPLWGALLVGALQNLVGYGWVWLVVTGKAPVLPLWVMCILIFVG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLV 179
NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIY MI S N SLIF+V
Sbjct: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPNHASLIFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
AVGP++VV+ MFI+RP+GGHRQVR SD TSF F Y+VCL+LAAY++ V+LLEDL +
Sbjct: 181 AVGPAMVVVTLMFIIRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGVMLLEDLVDLSH 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILS 299
++ V V L +++LLP+ IP+ L FF EP P EETLL E+ K EA KSE EVILS
Sbjct: 241 TLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQEAGKSEQDGHEVILS 300
Query: 300 EVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK 359
EVEDEKP EVD LPASER+KRIA LQ KLFQAAAEGAVR+KRR+GP RGEDFTL QAL+K
Sbjct: 301 EVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRGPHRGEDFTLMQALIK 360
Query: 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEA 419
ADF L+F SL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFLGRVGGGYFSE
Sbjct: 361 ADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
Query: 420 IVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479
IVR +AYPRP+AMAVAQ VMA +++A WPG +Y+ T+L+GL YGAHWAIVPAAASEL
Sbjct: 421 IVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG-LLWKYNGNMLPVSFRDQ 538
FGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD AE+QA + G++ F
Sbjct: 481 FGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAHEHHMRTAGSLFSGLFGPD 540
Query: 539 ETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
E C G++CY +T IM+G CIIA+++SLI+VHRTK VYA LYG
Sbjct: 541 EPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYGK 586
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/588 (68%), Positives = 476/588 (80%), Gaps = 4/588 (0%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M+RLPER ++F NNRWLVFV +MWIQSCAGIGYLFGS+SPVIK+ + YNQRQ++ LGVAK
Sbjct: 1 MIRLPERFRAFFNNRWLVFVAAMWIQSCAGIGYLFGSLSPVIKSSLNYNQRQIARLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
D+GDS+GF G+ EILP+W LIG LQN +GYG VWLI+T+R+P+LPLW +CI IFVG
Sbjct: 61 DIGDSVGFWIGSLCEILPLWVALLIGALQNLIGYGWVWLIITHRVPTLPLWAICILIFVG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLV 179
TNGETYFNT LVSCVQNFPKSRGPVVGILKGF+GLSGAILTQIY MI S + SL+F+V
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFSGLSGAILTQIYTMIHSPDHASLVFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
AVGP++VV A MFIVRP+GGHRQVR +D+ SF F Y VCL+LAAY++ V+LL+DL +
Sbjct: 181 AVGPTMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLVLAAYLMGVMLLQDLVDLSH 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILS 299
V+T+ L +++L+P+ IPV L F +EP P E LL E K E KSE EVI S
Sbjct: 241 TVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKEEPGKSEQDATEVIFS 300
Query: 300 EVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK 359
E+EDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+GPRRGEDFTL QAL+K
Sbjct: 301 ELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPRRGEDFTLMQALIK 360
Query: 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEA 419
ADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFLGR+GGGYFSE
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRIGGGYFSEM 420
Query: 420 IVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479
IVR +AYPRPVAMAVAQV MA L++A+GWPG +Y+ T+L+GL YGAHWAIVPAAASEL
Sbjct: 421 IVRDYAYPRPVAMAVAQVTMALGHLFFAMGWPGSLYIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV---SFR 536
FGLK+FGALYNF+ LA+P GSL+FSGVIAS IYD AEKQA NM +
Sbjct: 481 FGLKNFGALYNFINLANPTGSLVFSGVIASSIYDREAEKQAHHHHHQQQNMGSIFSGMLS 540
Query: 537 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
+ P C GSIC+ +T IM+G+CIIA+V+S+++VHRTK VYA LYG
Sbjct: 541 VDDPPKCEGSICFFLTSMIMSGICIIAVVLSMVLVHRTKVVYANLYGK 588
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226495681|ref|NP_001152103.1| nodulin-like protein [Zea mays] gi|195652627|gb|ACG45781.1| nodulin-like protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/593 (65%), Positives = 475/593 (80%), Gaps = 9/593 (1%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
MV + R++ F+ NRWLVFV +MW+QSCAG+GYLFGS+SPVIKA +GYNQRQV+ LGVAK
Sbjct: 1 MVEIGSRVRGFLRNRWLVFVAAMWMQSCAGVGYLFGSLSPVIKASLGYNQRQVAGLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
DLGDS+GF+ GT +LP+W+ L+G QN VGYG VWL VT R+P PLW +CI IF+G
Sbjct: 61 DLGDSVGFLAGTLCSVLPLWAALLVGAAQNLVGYGWVWLAVTRRVPVPPLWAMCILIFIG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLV 179
NGETYFNTAALVSCVQNFPKSRG +VGILKGFAGLSGAILTQIY ++ S ++ +LIF+V
Sbjct: 121 NNGETYFNTAALVSCVQNFPKSRGSIVGILKGFAGLSGAILTQIYAIVHSPDDAALIFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
AVGP+++V+A MFIVRP+GGHRQVR SDNTSF F Y+VCL+LAAY++ V+LLEDL +Q
Sbjct: 181 AVGPTMIVIALMFIVRPVGGHRQVRPSDNTSFTFVYSVCLLLAAYLMGVMLLEDLVDLSQ 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGE--ASKSEDYQEEVI 297
+V +L + LII +L+P+ IPV+L FF++ + LL K E AS S + Q+EVI
Sbjct: 241 SVTVLLTIVLIIFLLVPIVIPVLLSFFSDDDETLHALLLPSPRKEEPSASTSSEEQQEVI 300
Query: 298 LSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQAL 357
LSEVEDEKP +VD LPASERQKRIA LQ +LFQAAA+GAVRVKRRKGPRRGEDFTL QAL
Sbjct: 301 LSEVEDEKPKDVDLLPASERQKRIAELQTRLFQAAADGAVRVKRRKGPRRGEDFTLMQAL 360
Query: 358 MKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFS 417
+KADF LLFFSL+L SGSGLTVIDNLGQ+CQSLGY +T I+VSMISIWNFLGR+GGGYFS
Sbjct: 361 IKADFWLLFFSLLLGSGSGLTVIDNLGQMCQSLGYEETHIFVSMISIWNFLGRIGGGYFS 420
Query: 418 EAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS 477
E IV+ +AYPR +A+A+AQ++MA +A+ WPG +YV T+LVG+ YGAHWAIVPAAAS
Sbjct: 421 EIIVKDYAYPRAIALAIAQILMAIGHFNFAMAWPGTMYVGTLLVGVGYGAHWAIVPAAAS 480
Query: 478 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA------GLLWKYNGNML 531
ELFG+K+FGALYNFLT+A+PAGSL+FSGVIASGIYD A KQA L +G ++
Sbjct: 481 ELFGVKNFGALYNFLTVANPAGSLVFSGVIASGIYDAEAAKQAQQRHSTSKLLATSGRVV 540
Query: 532 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
V C G+IC+ ++ IMAG C++A +SLI+V+RTK VYA LYG
Sbjct: 541 SVVSEAAPALKCEGAICFFLSSLIMAGFCVVAFGLSLILVYRTKVVYAGLYGK 593
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242082081|ref|XP_002445809.1| hypothetical protein SORBIDRAFT_07g026140 [Sorghum bicolor] gi|241942159|gb|EES15304.1| hypothetical protein SORBIDRAFT_07g026140 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/594 (65%), Positives = 477/594 (80%), Gaps = 12/594 (2%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
MV + R++ F++NRWLVFV +MW+QSCAG+GYLFGS+SP IKA +GYNQRQV+ LGVAK
Sbjct: 1 MVEVGNRVRGFLHNRWLVFVAAMWMQSCAGVGYLFGSLSPGIKASLGYNQRQVAGLGVAK 60
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
DLGDS+GF+ GT +LP+W+ L+G QN VGYG VWL VT R+P PLW +CI IF+G
Sbjct: 61 DLGDSVGFLAGTLCAVLPLWAALLVGAAQNLVGYGWVWLAVTRRVPVPPLWAMCILIFIG 120
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLV 179
NGETYFNTAALVSCVQNFPKSRGP+VGILKGFAGLSGAILTQIY ++ S ++ +LIF+V
Sbjct: 121 NNGETYFNTAALVSCVQNFPKSRGPIVGILKGFAGLSGAILTQIYAIVHSPDDAALIFMV 180
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQ 239
AVGP++VV+A MFIVRP+GGHRQVR SD TSF F Y+VCL+LAAY++ V+LLEDL +Q
Sbjct: 181 AVGPTMVVIALMFIVRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGVMLLEDLVDLSQ 240
Query: 240 NVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGE--ASKSEDYQEEVI 297
+V VL + LII +L+P+ IPV+L FF++ + LL K E AS S + Q+EVI
Sbjct: 241 SVTVVLTIVLIIFLLVPIVIPVLLSFFSDDDETLYALLLPSPRKEEPSASTSSEEQQEVI 300
Query: 298 LSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQAL 357
LSEVEDEKP +VD LPASERQKRIA LQ +LFQAAA GAVRVKRRKGPRRGEDFTL QAL
Sbjct: 301 LSEVEDEKPRDVDLLPASERQKRIAELQTRLFQAAAVGAVRVKRRKGPRRGEDFTLMQAL 360
Query: 358 MKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFS 417
+KADF LLFFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISIWNFLGR+GGGYFS
Sbjct: 361 IKADFWLLFFSLLLGSGSGLTVIDNLGQMSQSLGYEETHIFVSMISIWNFLGRIGGGYFS 420
Query: 418 EAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS 477
E IV+ +AYPR +A+A+AQV+MA +A+ WPG +Y+ T+LVG+ YGAHWAIVPAAAS
Sbjct: 421 EIIVKDYAYPRAIALAIAQVLMAIGHFNFAMAWPGTMYIGTLLVGVGYGAHWAIVPAAAS 480
Query: 478 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR- 536
ELFG+K+FGALYNFLT+A+PAGSL+FSGVIASGIYD A KQA ++N +L +S R
Sbjct: 481 ELFGVKNFGALYNFLTVANPAGSLVFSGVIASGIYDAEAAKQAQ--QRHNSMLLAMSGRV 538
Query: 537 ----DQETPT--CLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN 584
+ P+ C G+IC+ ++ IM+G CIIA +SLI+V+RTK VY LYG
Sbjct: 539 VNIVSEAAPSLKCEGAICFFLSSLIMSGFCIIAFGLSLILVYRTKIVYTSLYGK 592
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 590 | ||||||
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.372 | 0.376 | 0.723 | 3.3e-171 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.372 | 0.379 | 0.687 | 6.5e-171 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.371 | 0.405 | 0.608 | 6.3e-140 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.371 | 0.405 | 0.608 | 6.3e-140 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.361 | 0.369 | 0.416 | 1.1e-78 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.359 | 0.352 | 0.418 | 4.1e-77 | |
| TAIR|locus:2198938 | 561 | AT1G80530 "AT1G80530" [Arabido | 0.377 | 0.397 | 0.367 | 2.9e-73 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.357 | 0.386 | 0.373 | 5.4e-67 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.357 | 0.372 | 0.355 | 2.1e-65 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.355 | 0.393 | 0.336 | 7.1e-55 |
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 3.3e-171, Sum P(2) = 3.3e-171
Identities = 160/221 (72%), Positives = 187/221 (84%)
Query: 6 ERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS 65
ER+KSF+NNRWLVFV +MWIQSCAGIGYLFGSISPVIK+ + YNQ+Q+S LGVAKDLGDS
Sbjct: 7 ERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDS 66
Query: 66 IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGET 125
+GF+ GT EILP+W+ L+G +QN VGYG VWLIVT R P LPLW +CI IFVG NGET
Sbjct: 67 VGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGET 126
Query: 126 YFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPS 184
YFNTAALVS VQNFPKSRGPVVGILKGFAGL GAIL+Q+Y MI S++ SLIF+VAV PS
Sbjct: 127 YFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPS 186
Query: 185 IVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 225
+VV+ MF +RP+GGHRQ+R SD TSF Y VC++LAAY+
Sbjct: 187 VVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYL 227
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| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 6.5e-171, Sum P(3) = 6.5e-171
Identities = 152/221 (68%), Positives = 183/221 (82%)
Query: 6 ERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS 65
E+ SF+NNRWLVFV +MWIQSCAGIGYLFGSISPVIK+ + YNQ+++S LGVAKDLGDS
Sbjct: 7 EKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDS 66
Query: 66 IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGET 125
+GF+ GT EILP+W+ L+G +QN +GYG VWLIVT R P LPLW +C+ IFVG NGET
Sbjct: 67 VGFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGET 126
Query: 126 YFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPS 184
YFNT ALVS VQNFPKSRGPVVGILKGFAGL GAI++QIY MI S+N SLI +VAV P+
Sbjct: 127 YFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPA 186
Query: 185 IVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 225
+VV+ MF +RP+GGH+Q+R +D SF F Y VCL+LAAY+
Sbjct: 187 VVVVCLMFFIRPVGGHKQIRPTDGASFTFIYGVCLLLAAYL 227
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| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 6.3e-140, Sum P(2) = 6.3e-140
Identities = 135/222 (60%), Positives = 181/222 (81%)
Query: 7 RLKSFVNNRWLVFVCSMWIQSCAGIGYLFG-SISPVIKAHMGYNQRQVSLLGVAKDLGDS 65
+L+ VN+RWLVFVC+MW+QS AG+GYLFG S+SP IK +GYNQ+Q++LLGVAK+LGD+
Sbjct: 8 KLELLVNDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDA 67
Query: 66 IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGET 125
IGFV G E+ P W + L+G QN GYG+VWL+VT +LP+LPLW+L +AIFVGTNGET
Sbjct: 68 IGFVSGALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGET 127
Query: 126 YFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMIS-ANETSLIFLVAVGPS 184
Y+NTA+LVSC+ NFP+SRGPVVGILKGF+GLSGAILTQ+Y+M + ++++S+I +VA+GP
Sbjct: 128 YYNTASLVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPP 187
Query: 185 IVVMAFMFIVRPIGGHRQVRL-SDNTSFLFTYTVCLILAAYM 225
+VV+A +FIVRP+ + L SD+ FL Y C++LA Y+
Sbjct: 188 VVVLALLFIVRPVERSCRTNLRSDDLRFLAIYGFCVVLAVYL 229
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| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 6.3e-140, Sum P(2) = 6.3e-140
Identities = 135/222 (60%), Positives = 181/222 (81%)
Query: 7 RLKSFVNNRWLVFVCSMWIQSCAGIGYLFG-SISPVIKAHMGYNQRQVSLLGVAKDLGDS 65
+L+ VN+RWLVFVC+MW+QS AG+GYLFG S+SP IK +GYNQ+Q++LLGVAK+LGD+
Sbjct: 8 KLELLVNDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDA 67
Query: 66 IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGET 125
IGFV G E+ P W + L+G QN GYG+VWL+VT +LP+LPLW+L +AIFVGTNGET
Sbjct: 68 IGFVSGALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGET 127
Query: 126 YFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMIS-ANETSLIFLVAVGPS 184
Y+NTA+LVSC+ NFP+SRGPVVGILKGF+GLSGAILTQ+Y+M + ++++S+I +VA+GP
Sbjct: 128 YYNTASLVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPP 187
Query: 185 IVVMAFMFIVRPIGGHRQVRL-SDNTSFLFTYTVCLILAAYM 225
+VV+A +FIVRP+ + L SD+ FL Y C++LA Y+
Sbjct: 188 VVVLALLFIVRPVERSCRTNLRSDDLRFLAIYGFCVVLAVYL 229
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| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 90/216 (41%), Positives = 137/216 (63%)
Query: 11 FVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVP 70
F N RW + S I +CAG YLFG+ S IK+ +GY+Q ++LLG KDLG ++G +
Sbjct: 13 FFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLS 72
Query: 71 GTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTA 130
G E+ P W + IG NFVGY ++WL VT ++ +W +C+ I +G N + + NT
Sbjct: 73 GLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTG 132
Query: 131 ALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANET-SLIFLVAVGPSIVVMA 189
ALV+CV+NFP+SRG ++G+LKG+ GLSGAI TQ+Y I +++ SLI L+A P+ V +
Sbjct: 133 ALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLV 192
Query: 190 FMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 225
F++++R RQ R + + F Y + + LA ++
Sbjct: 193 FVYLIREKKVVRQ-RNELSVFYQFLY-ISIFLALFL 226
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| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 90/215 (41%), Positives = 131/215 (60%)
Query: 12 VNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPG 71
+ RW +F S+ I S AG Y+FG S IK +GY+Q ++LL KDLG ++G + G
Sbjct: 18 LTGRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDLGANVGVLAG 77
Query: 72 TFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAA 131
E+ P W I LIG + NF GY ++WL VT R+ +W +C+ I VG N +++ NT +
Sbjct: 78 LLNEVTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGANSQSFANTGS 137
Query: 132 LVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANETS-LIFLVAVGPSIVVMAF 190
LV+CV+NFP+SRG V+GILKG+ GLSGAI+TQ+Y +T LI ++ P+IV AF
Sbjct: 138 LVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIGWLPAIVSFAF 197
Query: 191 MFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 225
+ +R + RQ + F Y + L LA ++
Sbjct: 198 LRTIRIMKVKRQTN-ELKVFYNFLY-ISLGLATFL 230
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| TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 83/226 (36%), Positives = 134/226 (59%)
Query: 1 MVRLPERLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAK 60
M +L E KS W+ + W+Q AG G F S +K+ +G++Q+QV++LGVA
Sbjct: 1 MTKLAE--KSGSRPPWVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVAC 58
Query: 61 DLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120
DLG+++G +PG LP WS+ LIG F+G+G++WL V+ + LP W+L +A+ +
Sbjct: 59 DLGENMGLLPGYASNKLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALA 118
Query: 121 TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANET-SLIFLV 179
TN ++F TA+LV+ ++NFP SRGPV G+LKG+ G+SGA T ++ M+ + L+ +
Sbjct: 119 TNSNSWFGTASLVTNMRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFL 178
Query: 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYM 225
VG ++ + M+ +RP S+ F F ++ AAY+
Sbjct: 179 TVGIPVICLTVMYFIRPCIPATGEDPSEPMYFAFLLVTSILFAAYL 224
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| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 80/214 (37%), Positives = 127/214 (59%)
Query: 15 RWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFV 74
+WL FV ++W+QS +G Y F + S +K+ M NQ +++ L VAKD+G + G + G
Sbjct: 14 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKDVGKAFGILAGLAS 73
Query: 75 EILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVS 134
+ LP I LIG + +GYG+ WL+V+ + +P W +CI + +G N T+ NTA LV+
Sbjct: 74 DRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGGNSTTWMNTAVLVT 133
Query: 135 CVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANE-TSLIFLVAVGPSIVVMAFMFI 193
C++NF ++RGPV GILKG+ GLS AI T + + +N+ S + L+AV P V + +F
Sbjct: 134 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLAVVPFAVCLTAVFF 193
Query: 194 VRPIGGHRQVRLSDNTSFLFTY--TVCLILAAYM 225
+R I + + FT V +++A Y+
Sbjct: 194 LREIPPASSAAEENEETRYFTIFNIVAVVVAVYL 227
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| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 2.1e-65, Sum P(2) = 2.1e-65
Identities = 76/214 (35%), Positives = 124/214 (57%)
Query: 15 RWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFV 74
+WL FV ++W+QS +G Y F + S +K+ M Q +++ L VAKD+G + G + G
Sbjct: 16 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75
Query: 75 EILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVS 134
+ L I LIG + +GYG+ WL+V+ + +P W +C+ + +G N T+ NTA LV+
Sbjct: 76 DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135
Query: 135 CVQNFPKSRGPVVGILKGFAGLSGAILTQIY-IMISANETSLIFLVAVGPSIVVMAFMFI 193
C++NF ++RGPV GILKG+ GLS AI T + + S++ S + L++V P V + +F
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFF 195
Query: 194 VRPIGGHRQVRLSDNTSFLFTY--TVCLILAAYM 225
+R I + S F V +++A Y+
Sbjct: 196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYL 229
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| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 7.1e-55, Sum P(2) = 7.1e-55
Identities = 78/232 (33%), Positives = 124/232 (53%)
Query: 12 VNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPG 71
+ +W+ S+WIQ +G Y FG S V+K+ Y+Q + + V KD+G + G G
Sbjct: 4 LRTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSG 63
Query: 72 ---TFVEILPV-------------WSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCI 115
T+ + W + +G +Q F GY L+W VT + P+ ++C+
Sbjct: 64 LLYTYATSNRLRGRGGGIGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLIRKPPVPLMCL 123
Query: 116 AIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANE-TS 174
+F+ +T+FNTA +VS V+NF G VGI+KGF GLSGAIL Q+Y + A + S
Sbjct: 124 FMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDPAS 183
Query: 175 LIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYT-VCLILAAYM 225
I L+AV P+++ + M +VR + ++D+ L + V LI+AAY+
Sbjct: 184 FILLLAVTPTVLSLLVMPLVRIY----ETSVADDKKHLNGLSAVSLIIAAYL 231
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017962001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (588 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 590 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 9e-94 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 2e-13 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 1e-04 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 3e-04 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 9e-94
Identities = 104/248 (41%), Positives = 159/248 (64%), Gaps = 1/248 (0%)
Query: 15 RWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFV 74
RWL V ++WIQS AG Y F S +K+ +GY+Q Q++LLGVAKDLG + G++ G
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 75 EILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVS 134
E LP W + L+G FVGYG+ WL VT ++P LP W+LC+AI + N +FNTA+LV+
Sbjct: 61 EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120
Query: 135 CVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANET-SLIFLVAVGPSIVVMAFMFI 193
C++NFP+SRG V+GILKG+AGLS AI TQ+Y I N+ SL+ L A+ P +V + ++
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180
Query: 194 VRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIII 253
+RP G + S++ FL + + LA Y++A+ +L + L +++++
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240
Query: 254 LLPVTIPV 261
L+P+ +P+
Sbjct: 241 LVPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 346 RRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT--SIYVSMIS 403
+D+T+ + L F +L+ S L + SGL +I QSLG +D + VS+ S
Sbjct: 191 VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISS 250
Query: 404 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL 463
I+N GR G S+ I R+ + ++ V MA L + T LV
Sbjct: 251 IFNGGGRPFLGALSDKIGRQKTM--SIVFGISAVGMAAMLFIPMLN-DVLFLATVALVFF 307
Query: 464 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515
++G ++ P+ S++FG + A Y FL A IF G+IAS
Sbjct: 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIASHALTEI 358
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This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 13/189 (6%)
Query: 15 RWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGF--VPGT 72
R+ + V + C Y F IS ++A QR +S + +G ++G+ +P +
Sbjct: 26 RFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITT---VGIAVGYFLLPYS 82
Query: 73 FV-EILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG--TNGETYFNT 129
F+ + L I ++ + +G L L + V+ ++++ G T G F+
Sbjct: 83 FIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGLMTLGCMLFDL 139
Query: 130 AALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVV-- 187
A+V+ + FP +RG VV I+K F GL AIL I + ++ TS F + ++VV
Sbjct: 140 GAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGI 199
Query: 188 MAFMFIVRP 196
+A +F+ P
Sbjct: 200 LAIVFMRLP 208
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Length = 591 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 20/167 (11%)
Query: 350 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT------------SI 397
DF+ + L F +++ V+ + GL LG I + G AD +
Sbjct: 197 DFSPGEMLRTPVFWVMYTMFVMVAAGGLMATAQLGPIAKDFGVADVPVTLLGLTMAALTF 256
Query: 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL-LYYAIGW-PGEIY 455
+S+ I N R G+ S+ I R+ M VA + + L G P
Sbjct: 257 ALSIDRILNGFTRPFFGWISDKIGRE------NTMFVAFGIEGVGIYLLPTFGHNPVAFV 310
Query: 456 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI 502
+ + LV ++G +++ PA ++ FG K L A +L+
Sbjct: 311 ILSALVFFAWGEIYSLFPATCADTFGSKYAATNAGLLYTAKGTAALL 357
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This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 590 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.89 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.87 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.87 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.87 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.86 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.86 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.85 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.82 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.82 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.81 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.8 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.79 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.79 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.78 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.78 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.78 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.77 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.77 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.77 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.76 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.75 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.74 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.73 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.73 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.73 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.72 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.72 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.71 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.71 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.69 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.69 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.68 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.68 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.68 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.68 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.68 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.68 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.68 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.67 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.67 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.67 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.66 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.66 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.66 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.65 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.65 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.64 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.64 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.63 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.63 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.63 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.63 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.62 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.6 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.59 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.58 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.57 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.57 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.55 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.54 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.54 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.53 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.53 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.49 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.48 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.47 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.46 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.44 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.4 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.4 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.35 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.32 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.3 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.22 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.18 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.16 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.14 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.12 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.11 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.07 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.02 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.01 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.98 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.91 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.86 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.86 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.83 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.82 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.81 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.78 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.77 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.77 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.76 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.75 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.75 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.74 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.73 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.73 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.71 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.71 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.67 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.67 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.67 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.66 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.66 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.65 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.63 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.62 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.62 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.62 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.61 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.6 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.6 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.59 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.59 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.59 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.58 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.58 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.58 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.57 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.57 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.56 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.55 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.53 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.53 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.52 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.51 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.51 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.5 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.5 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.5 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.49 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.48 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.48 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.46 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.44 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.44 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.42 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.41 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.4 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.38 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.38 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.38 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.37 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.37 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.35 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.32 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.32 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.32 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.28 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.24 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.24 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.23 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.22 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.21 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.17 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.17 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.15 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.13 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.1 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.08 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.02 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.01 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.01 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.01 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.99 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.98 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.89 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.86 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.85 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.85 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.83 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.81 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.81 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.75 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.75 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.69 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.69 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.63 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.62 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.52 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.49 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.47 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.45 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.41 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.37 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.25 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.23 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.08 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.92 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.78 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.69 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.6 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 96.51 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.17 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 96.09 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.02 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 95.89 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 95.82 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 95.77 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 95.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 95.61 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 95.3 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.05 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 95.05 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 95.04 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 95.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 94.9 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.85 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 94.79 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 94.76 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 94.58 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.9 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 93.87 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 92.72 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 92.37 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 91.85 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 91.53 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 91.13 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 91.07 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 89.96 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 89.88 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 89.28 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 88.91 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 88.05 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 87.64 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 87.23 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 84.81 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 84.46 | |
| PRK11462 | 460 | putative transporter; Provisional | 83.13 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 82.38 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 82.31 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 82.04 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-77 Score=666.09 Aligned_cols=518 Identities=20% Similarity=0.289 Sum_probs=429.2
Q ss_pred hhhhhcc-cchHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhhccCccceeeeccchHHHHH
Q 007766 6 ERLKSFV-NNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFVEILPVWSINL 84 (590)
Q Consensus 6 ~~~~~~~-~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~gi~~G~~~D~~gpr~~~~ 84 (590)
++.+..+ .+||++++++++++.++|+.|.|++|+++|++++|+||+|+++++..+...+.+.+++|++.||+|||.+++
T Consensus 16 ~~~~~~~e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vll 95 (591)
T PTZ00207 16 ANQKPINEPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFV 95 (591)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 4444444 789999999999999999999999999999999999999999976554444456778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHH
Q 007766 85 IGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQI 164 (590)
Q Consensus 85 iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i 164 (590)
+|.++.++||+++|+++++.+. .++|+++++.++.|+|.++.++++++++++|||++||++.|+.+++.|+|+++++++
T Consensus 96 ig~ll~~iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l 174 (591)
T PTZ00207 96 LSMTVFCLGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSI 174 (591)
T ss_pred HHHHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888774 468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-cCChhhHHHHHHHhhHHHHHhhheeeeeccCCcc---c---cCCCCc-----------------chhhhHHHHHH
Q 007766 165 YIMI-SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQ---V---RLSDNT-----------------SFLFTYTVCLI 220 (590)
Q Consensus 165 ~~~~-~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~---~---~~~~~~-----------------~~~~~~~~~~~ 220 (590)
+..+ .+|.+.+++++++.+.+++++...++|..|.+.. + +++++. +|.+.+.++++
T Consensus 175 ~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~ 254 (591)
T PTZ00207 175 QLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILII 254 (591)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHH
Confidence 9998 8889999999999999999999999998875532 1 123333 68888889999
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHHHHHHH-HHHHhc-cccceecccccCCCCCCccccccccccCcCCCccchhhhhhh
Q 007766 221 LAAYMLAVLLLEDLEVANQNVLTVLAVGLI-IIILLP-VTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVIL 298 (590)
Q Consensus 221 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~-~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~ 298 (590)
+++|+++.++++++.+++++.+..++++++ ++++.| +++|++. +.++.++ +++ + ++.. +..
T Consensus 255 l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~--~~~---~---~~~~----~~~---- 317 (591)
T PTZ00207 255 LIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPH--DDS---D---GKAK----EHV---- 317 (591)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCcC--CCc---c---cccc----ccc----
Confidence 999999999999999999988887777666 777788 7888864 1111100 000 0 0000 000
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccce
Q 007766 299 SEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLT 378 (590)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm 378 (590)
.++.+.++ ++++. -+.+. + ...|+.++ |++|.+++.|||++|+.++|+.|+|++
T Consensus 318 --~~~~~~~~----~~~~~---------------~~~~~--~-~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~ 371 (591)
T PTZ00207 318 --EAGEEVSA----AEDKV---------------VETDV--D-YIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFV 371 (591)
T ss_pred --cccccccc----ccccc---------------ccccc--c-CCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchhe
Confidence 00000000 00000 00000 1 01255544 999999999999999999999999999
Q ss_pred eecchHHHHHHh-cC-Ccc--cc-hhHHHHhhhhhccccccchhhhhhhcc---CCchhHHHHHHHHHHHHHHHHHHhcC
Q 007766 379 VIDNLGQICQSL-GY-ADT--SI-YVSMISIWNFLGRVGGGYFSEAIVRKF---AYPRPVAMAVAQVVMAFALLYYAIGW 450 (590)
Q Consensus 379 ~i~n~~~I~~s~-g~-~~~--~~-~Vsl~si~N~~GRl~~G~lSD~l~r~~---~~~R~~~l~~~~~l~~~~~l~~~~~~ 450 (590)
++||++||.+++ |+ ++. .+ +|+++|++|++||++.|++|.++-|+. ++||+.++.+.++ +.+++++++...
T Consensus 372 ~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~ 450 (591)
T PTZ00207 372 IIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTL 450 (591)
T ss_pred eeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHC
Confidence 999999999999 77 344 34 899999999999999999994444433 2999999999999 888888888777
Q ss_pred c-hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCC
Q 007766 451 P-GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN 529 (590)
Q Consensus 451 ~-~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~ 529 (590)
| ..|+++++++|+|||+.|++.|++++|+|| ||||++|++++++.++|+++||..++|.+||++++|+
T Consensus 451 p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~---------- 519 (591)
T PTZ00207 451 PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL---------- 519 (591)
T ss_pred CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC----------
Confidence 7 789999999999999999999999999999 9999999999999999999999999999999999653
Q ss_pred CCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhccc
Q 007766 530 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRS 588 (590)
Q Consensus 530 ~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r~~~~~~~~~~~~~ 588 (590)
++.+|+|++||+.+|+|++++|++|++++++++.|+|++|++..+.|||.
T Consensus 520 ---------~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~~~~ 569 (591)
T PTZ00207 520 ---------GQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEERRRI 569 (591)
T ss_pred ---------CCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999777666664
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=442.44 Aligned_cols=247 Identities=44% Similarity=0.894 Sum_probs=237.7
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhhccCccceeeeccchHHHHHHHHHHHHHHH
Q 007766 15 RWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGY 94 (590)
Q Consensus 15 RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY 94 (590)
||++|++++|+|+++|++|.||+|||+||+++|+||+|+|++++++|+|.++|+++|+++|++|||.++++|++++++||
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHh-cCChh
Q 007766 95 GLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANET 173 (590)
Q Consensus 95 ~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~ 173 (590)
+++|++++++++++++|++|++.+++|+|++|++||+++||+||||++||+|+|++|+++||||+||+++|+++ ++|++
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 99999999999878999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHhhHHHHHhhheeeeeccCC--ccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Q 007766 174 SLIFLVAVGPSIVVMAFMFIVRPIGGH--RQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLII 251 (590)
Q Consensus 174 ~fllfla~~~~~v~l~~~~~ir~~~~~--~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (590)
.|++|+++.|+++++++++++|++|+. .+++++++.+|...+.+++++++|+++.++.++..++++..+....+++++
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l 240 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL 240 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999863 344567788899999999999999999999999999999999999999999
Q ss_pred HHHhccccce
Q 007766 252 IILLPVTIPV 261 (590)
Q Consensus 252 ll~~~~~~~~ 261 (590)
+|+.|+++|+
T Consensus 241 lL~~Pl~i~~ 250 (250)
T PF06813_consen 241 LLLLPLAIPV 250 (250)
T ss_pred HHHhhhhccC
Confidence 9999998885
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=246.23 Aligned_cols=370 Identities=22% Similarity=0.271 Sum_probs=265.8
Q ss_pred chHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHH
Q 007766 14 NRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFV 92 (590)
Q Consensus 14 ~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~ 92 (590)
+||..+++.+..+++.|..|.|+.+.|++++++|+|.++++++.....++.. ..++.|.+.||+|+|.++.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 5789999999999999999999999999999999999999998777777765 579999999999999999999999888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHhcCCh
Q 007766 93 GYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANE 172 (590)
Q Consensus 93 GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~ 172 (590)
++.+..+. +++|++++..++.|.+.+..+.++.....+|||++||++.|+...+.++++.+..++...+.
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 150 (377)
T TIGR00890 81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVI--- 150 (377)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHH---
Confidence 88554332 24666666666888888888888888999999999999999999999999887765554330
Q ss_pred hhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q 007766 173 TSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIII 252 (590)
Q Consensus 173 ~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (590)
+ ..+.+..+.. .++. ..+..++
T Consensus 151 ------------------------------~--~~~~~~~f~~-----~~~~---------------------~~~~~~~ 172 (377)
T TIGR00890 151 ------------------------------N--LEGVPAAFIY-----MGII---------------------FLLVIVL 172 (377)
T ss_pred ------------------------------h--cccHHHHHHH-----HHHH---------------------HHHHHHH
Confidence 0 0000001100 0000 0000000
Q ss_pred HHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 007766 253 ILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAA 332 (590)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (590)
+.. +.++ | +++ + ..++++
T Consensus 173 ~~~---------~~~~-------~--~~~---~-----------------~~~~~~------------------------ 190 (377)
T TIGR00890 173 GAF---------LIGY-------P--PGQ---L-----------------IKTNIE------------------------ 190 (377)
T ss_pred HHH---------heec-------C--chh---c-----------------cccCcc------------------------
Confidence 000 0010 1 000 0 000000
Q ss_pred hhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhcc
Q 007766 333 AEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGR 410 (590)
Q Consensus 333 ~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GR 410 (590)
. + ..+.+.++.+|++++|++++.+++.......+.+...++.++++.++.. ...++.++.+..||
T Consensus 191 -------~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (377)
T TIGR00890 191 -------V----S--VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGR 257 (377)
T ss_pred -------c----c--hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0123456789999999999888877666666666666777777766543 46788999999999
Q ss_pred ccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC--c-hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhh
Q 007766 411 VGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW--P-GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGA 487 (590)
Q Consensus 411 l~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~--~-~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~ 487 (590)
+.+|+++||++|++.. .+...+..++.+++.... . ..++....+.|+++|..+.++|++++|.++.|+.|+
T Consensus 258 ~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 331 (377)
T TIGR00890 258 PFLGALSDKIGRQKTM------SIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAA 331 (377)
T ss_pred HHHHHHHHHHhhhhhh------hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhh
Confidence 9999999999986532 344444444444333222 1 234456678899999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHH
Q 007766 488 LYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV 565 (590)
Q Consensus 488 nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~v 565 (590)
.+|+......+|..+ +|.++|.++|..+ |+..|.+.+++++++++
T Consensus 332 ~~g~~~~~~~~g~~~-~~~~~g~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~ 376 (377)
T TIGR00890 332 NYGFLYTAKAVAGIF-GGLIASHALTEIG--------------------------------FEYTFIVTGAFALTSLA 376 (377)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHhhhc--------------------------------hhhHHHHHHHHHHHhcc
Confidence 999999999999876 7889999998655 88899998887777653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=255.33 Aligned_cols=423 Identities=19% Similarity=0.251 Sum_probs=298.9
Q ss_pred hHHHHHHHHHH-HHhcCcccccccccHHHHHHhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHHHHHHHHH
Q 007766 15 RWLVFVCSMWI-QSCAGIGYLFGSISPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFV 92 (590)
Q Consensus 15 RW~~l~as~~i-~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~ 92 (590)
-|.+.+++.++ ...-|-.|.|+++-+.+++.++-+.+|++++ ++...+....|++.+.++||+|.|.+.++|+++.+.
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 48999999776 5567999999999999999999999999996 666666666799999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHH-HHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHh---
Q 007766 93 GYGLVWLIVTNRLPSLPLWVLCI-AIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI--- 168 (590)
Q Consensus 93 GY~~~~l~~~g~i~s~~~~~l~~-~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~--- 168 (590)
|+.+-.++ .++|++++ +++++|.|.++.|..+++...++|++||++|+|+..++-|++..+|+++-..+
T Consensus 124 g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 124 GLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred HHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence 98664332 24787766 79999999999999999999999999999999999999999999999998887
Q ss_pred cCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Q 007766 169 SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVG 248 (590)
Q Consensus 169 ~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~ 248 (590)
.+....++.+.++. +-+++.....||...+.... +.++.-. ..
T Consensus 197 ~G~r~~~l~~~~~~--l~~~~~~~~~rp~~~~~~~~-~~~~~~~-------------------------~~--------- 239 (509)
T KOG2504|consen 197 YGWRGALLIFGGIS--LNVLVAGALLRPLSPPKKPN-EEKDLRN-------------------------SA--------- 239 (509)
T ss_pred hCcHHHHHHHHHHH--HHHHHHHHHcCCCCcCCCch-hhhhhcc-------------------------cc---------
Confidence 34444555444443 44444555555544332221 0000000 00
Q ss_pred HHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 007766 249 LIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKL 328 (590)
Q Consensus 249 ~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (590)
.+....+.+...+. .. .+. .... ..+++.. ..++
T Consensus 240 --------------~~~~~~~~~~~~~~---~~---~~~-----------~~~~---------~~~~~~~-~~~~----- 273 (509)
T KOG2504|consen 240 --------------ASVESTPKPVELRI---SE---RDS-----------GLKK---------LSLSNLA-TLKR----- 273 (509)
T ss_pred --------------cccccccccccccc---cc---CCC-----------CCCc---------ccccchh-hhhh-----
Confidence 00000000000000 00 000 0000 0000000 0000
Q ss_pred HHHhhhhhhhhcccCCCCCC-CCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhh
Q 007766 329 FQAAAEGAVRVKRRKGPRRG-EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIW 405 (590)
Q Consensus 329 ~~~~~~~~~~~~~~~~p~~~-~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~ 405 (590)
++ .+.++.+.+. .+.-..++++++.||++.+-..+....-..-.-.+...+++.|+++.. ..+|++++.
T Consensus 274 ------~~--~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~ 345 (509)
T KOG2504|consen 274 ------GP--DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVS 345 (509)
T ss_pred ------CC--ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHh
Confidence 00 0000001110 112236899999999998888877776666666777788888887654 589999999
Q ss_pred hhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccc
Q 007766 406 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS 484 (590)
Q Consensus 406 N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~ 484 (590)
|..||++.|++.|+-.. ++.+...++.+...++.++.... ....++..+++.|++.|...++.|.++.|+.|+.+
T Consensus 346 ~i~gRi~~G~laD~~~~----~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~ 421 (509)
T KOG2504|consen 346 DIIGRIILGLLADKPGI----RALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK 421 (509)
T ss_pred hhhhhhhhhhhcCcccc----chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh
Confidence 99999999999999863 22333344444445444333333 34589999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 007766 485 FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM 564 (590)
Q Consensus 485 ~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~ 564 (590)
+..-||++.+..+++.++ +|+++|.+||.++ -|..+|+.++...+++.
T Consensus 422 l~~a~Gl~l~~~gi~~l~-gpPiag~~~d~tg-------------------------------~Y~~~f~~~g~~~~~s~ 469 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALV-GPPIAGLLYDITG-------------------------------NYDHAFYFCGLCFLLSA 469 (509)
T ss_pred cchHHHHHHHHhHHHHHc-CcccceeeeeccC-------------------------------CeeeehhhcChHHHHHH
Confidence 999999999999999987 6889999999887 29999999999988888
Q ss_pred HHHHHhh
Q 007766 565 VMSLIVV 571 (590)
Q Consensus 565 vls~~l~ 571 (590)
++.++..
T Consensus 470 ~~~~~~~ 476 (509)
T KOG2504|consen 470 VLLLILR 476 (509)
T ss_pred HHHHHhH
Confidence 7777655
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=222.02 Aligned_cols=419 Identities=13% Similarity=0.072 Sum_probs=257.8
Q ss_pred hhhcccchHHHHHHHHHHHHh-cCcccccccccHHHHHHhCCChhhHHHHHHHHHHh-hhccCccceeeeccchHHHHHH
Q 007766 8 LKSFVNNRWLVFVCSMWIQSC-AGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLG-DSIGFVPGTFVEILPVWSINLI 85 (590)
Q Consensus 8 ~~~~~~~RW~~l~as~~i~l~-~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G-~~~gi~~G~~~D~~gpr~~~~i 85 (590)
.+.-...||.+++++.+.+.. -+..+.++.+-+++++.+|+|+++.+++.....++ ...+++.|.+.||+|+|.++++
T Consensus 10 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~ 89 (455)
T TIGR00892 10 PPPDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIA 89 (455)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHh
Confidence 334345579888888777653 45557889999999999999999999964444444 4568899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHH
Q 007766 86 GVLQNFVGYGLVWLIVTNRLPSLPLWVLCI-AIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQI 164 (590)
Q Consensus 86 G~~l~~~GY~~~~l~~~g~i~s~~~~~l~~-~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i 164 (590)
+.++..++..+... . + ++|.+++ ..++.|.+.+.....+.....+|||++||++.|+...+.++++.+..++
T Consensus 90 ~~~~~~~~~~~~~~--~---~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l 162 (455)
T TIGR00892 90 GGLLASLGMILASF--S---S--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPL 162 (455)
T ss_pred hHHHHHHHHHHHHH--h---h--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHH
Confidence 98888777654322 2 1 3455543 3356677777655666777789999999999999999999988877655
Q ss_pred HHHh-cCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHH
Q 007766 165 YIMI-SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLT 243 (590)
Q Consensus 165 ~~~~-~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 243 (590)
...+ . ..+.+..+.. .++.
T Consensus 163 ~~~l~~------------------------------------~~gwr~~f~~-----~~~~------------------- 182 (455)
T TIGR00892 163 NQYLFE------------------------------------SFGWRGSFLI-----LGGL------------------- 182 (455)
T ss_pred HHHHHH------------------------------------HhChHHHHHH-----HHHH-------------------
Confidence 4332 0 0011111100 0000
Q ss_pred HHHHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHH
Q 007766 244 VLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAH 323 (590)
Q Consensus 244 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (590)
.+...+..+. .. +++++...++ ++ .+ + . .+.+.+.+ ++.+
T Consensus 183 --~~~~~v~~~~--~~-------~~~~~~~~~~---~~--~~------~------~-~~~~~~~~------~~~~----- 222 (455)
T TIGR00892 183 --LLHCCVCGAL--MR-------PVGPSQRVSK---SK--SK------E------G-LPPDGSTK------KLSK----- 222 (455)
T ss_pred --HHHHHHHHHH--hC-------CCCccccccc---cc--cc------c------c-CCCCCccc------cccc-----
Confidence 0000000000 00 0000000000 00 00 0 0 00000000 0000
Q ss_pred HHHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHH
Q 007766 324 LQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSM 401 (590)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl 401 (590)
. .. .+...+.-..+.+++++||.+.+..++....-.+....+.++.++.|++... ...++
T Consensus 223 ------------~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~ 284 (455)
T TIGR00892 223 ------------K---ST---AEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSI 284 (455)
T ss_pred ------------c---ch---hhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0 00 0000011113688999999888776655544444555666777777776543 47888
Q ss_pred HHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhccchhhHHHHHHhh
Q 007766 402 ISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF 480 (590)
Q Consensus 402 ~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~-~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~F 480 (590)
.++.+.++|+..|+++||...+.+ |...+.....+..++.++.. ......+++..++.|+++|......++++.|.+
T Consensus 285 ~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~ 362 (455)
T TIGR00892 285 IGFVDIFARPSCGLIAGLKWIRPH--VQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV 362 (455)
T ss_pred HHHHHHHHHHHHHHHhcccccCHH--HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Confidence 999999999999999997321111 11222222222222222222 223345777888999999999999999999999
Q ss_pred cccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHH
Q 007766 481 GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLC 560 (590)
Q Consensus 481 G~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~ 560 (590)
+.++.|+.+|++.+...+|..+ +|.++|.++|..+ -|+..|.+.++++
T Consensus 363 ~~~~~g~~~g~~~~~~~lg~~i-gp~i~G~l~~~~g-------------------------------~~~~~f~~~~~~~ 410 (455)
T TIGR00892 363 GAQRFSSAVGLVTIVECCAVLI-GPPLAGRLVDATK-------------------------------NYKYIFYASGSIV 410 (455)
T ss_pred hHHHHhhHHhHHHHHHHHHHHc-cccceeeeehhcC-------------------------------CcchHHHHhhHHH
Confidence 9999999999999999999987 7989999999764 1888888888877
Q ss_pred HHHHH----HHHHhhhhhhHHHH-HHHhhh
Q 007766 561 IIAMV----MSLIVVHRTKSVYA-QLYGNL 585 (590)
Q Consensus 561 ~~a~v----ls~~l~~r~r~~~~-~~~~~~ 585 (590)
+++.+ ..++.++++||.-+ .+.|+.
T Consensus 411 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (455)
T TIGR00892 411 VSAGLFLAIGNYINYRLLAKEQKAALEREG 440 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77665 33445556665333 444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=213.50 Aligned_cols=419 Identities=12% Similarity=0.139 Sum_probs=241.5
Q ss_pred cccchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHH
Q 007766 11 FVNNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVL 88 (590)
Q Consensus 11 ~~~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~ 88 (590)
..+++|.++.+..+........ +.++...|.++++ |+|.++.+++.....++.. ..++.|.+.||+|+|.++.+|.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~ 101 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence 3445677655555443333322 3467788899988 9999999997666666654 58999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHH
Q 007766 89 QNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIM 167 (590)
Q Consensus 89 l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~ 167 (590)
+..++.....+.-. . ..+++.+....++.|.+.+..+........++|| ++||++.|+.-.+.++++.+..++...
T Consensus 102 ~~~i~~~~~~~~~~-~--~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 178 (452)
T PRK11273 102 LAAAVMLFMGFVPW-A--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLL 178 (452)
T ss_pred HHHHHHHHHHhhhc-c--cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 88777755443211 1 1235555555566676777676666777889997 469999999888877777665544321
Q ss_pred hcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHH
Q 007766 168 ISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAV 247 (590)
Q Consensus 168 ~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 247 (590)
. +.. ..+.+..+ .+.. ....
T Consensus 179 ~--------------------~~~--------------~~gw~~~f-----------~i~~---------------~~~~ 198 (452)
T PRK11273 179 G--------------------MAW--------------FNDWHAAL-----------YMPA---------------FAAI 198 (452)
T ss_pred H--------------------HHH--------------hccHHHHH-----------HHHH---------------HHHH
Confidence 1 000 00000000 0000 0000
Q ss_pred HHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHH
Q 007766 248 GLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAK 327 (590)
Q Consensus 248 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (590)
+..++... +.+++++ +.-.++ + ++ .+++.+++
T Consensus 199 ~~~~l~~~---------~~~~~~~---~~~~~~----~-----~~--------~~~~~~~~------------------- 230 (452)
T PRK11273 199 LVALFAFA---------MMRDTPQ---SCGLPP----I-----EE--------YKNDYPDD------------------- 230 (452)
T ss_pred HHHHHHHH---------HccCCHh---hcCCCC----h-----hh--------hhhccccc-------------------
Confidence 00000000 0111100 000000 0 00 00000000
Q ss_pred HHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHh
Q 007766 328 LFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISI 404 (590)
Q Consensus 328 ~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si 404 (590)
.+.+ +.+ .....+.-...++|++.+|.+++.+++....-..+........++ .|.+... ...++.++
T Consensus 231 -----~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~ 300 (452)
T PRK11273 231 -----YNEK---HEQ--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 300 (452)
T ss_pred -----cccc---cCC--CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0000 000 000001111247889999998888766554322333445555554 4665433 35567889
Q ss_pred hhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh--c-CchhHHHHHHHHHhhhhccchhhHHHHHHhhc
Q 007766 405 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI--G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFG 481 (590)
Q Consensus 405 ~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~--~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG 481 (590)
++..|++++|+++||++++++.. ...+...+..++.+.+.. . ....++++..++|....+........+.|.+.
T Consensus 301 ~~~~g~~~~G~l~dr~~~~r~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 377 (452)
T PRK11273 301 AGIPGTLLCGWMSDKVFRGNRGA---TGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAP 377 (452)
T ss_pred HHHHHHHHHHHHHHHHccCCcch---HHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 99999999999999996543221 111122222222222211 1 12233444555565544433444567889999
Q ss_pred ccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHH
Q 007766 482 LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCI 561 (590)
Q Consensus 482 ~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~ 561 (590)
.+..|+..|+......+|+.+++|.+.|.++|..+ |+..|.+++++|+
T Consensus 378 ~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g--------------------------------~~~~f~~~~~~~~ 425 (452)
T PRK11273 378 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--------------------------------WDGGFMVMIGGSI 425 (452)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc--------------------------------chHHHHHHHHHHH
Confidence 99999999999876667765557889999999765 8999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhhc
Q 007766 562 IAMVMSLIVVHRTKSVYAQLYGNLN 586 (590)
Q Consensus 562 ~a~vls~~l~~r~r~~~~~~~~~~~ 586 (590)
+++++.+++.+-+||..+++..+|+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (452)
T PRK11273 426 LAVILLIVVMIGEKRHHEELLQKRN 450 (452)
T ss_pred HHHHHHHHHhccccchHHHHHhhhc
Confidence 9999999777766666666655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=211.62 Aligned_cols=421 Identities=12% Similarity=0.032 Sum_probs=241.8
Q ss_pred hhcccchHHHHHHHHHHHHh-cCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHH
Q 007766 9 KSFVNNRWLVFVCSMWIQSC-AGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIG 86 (590)
Q Consensus 9 ~~~~~~RW~~l~as~~i~l~-~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG 86 (590)
|...+.+|.++....+.-.. --.-+.+++-.|++++++|+|.+|++++..+..++.. ..++.|.+.||+|+|.++.++
T Consensus 21 ~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~ 100 (467)
T PRK09556 21 KMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFL 100 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHH
Confidence 34444556555444444332 2245678888999999999999999998767666664 478999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHH
Q 007766 87 VLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 87 ~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
.++.+++...+.....+.. .+++++.+.-++.|.+.+....++.+...+||| ++||++.|+......+++++-..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 101 LILSAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 8877666555444333332 357777777777888888777888889999997 5699999999888888887654332
Q ss_pred HHhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHH
Q 007766 166 IMISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVL 245 (590)
Q Consensus 166 ~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 245 (590)
... ++.. . ..+.+..+. ..++.
T Consensus 179 ~~~-------------------------~~~~----~---~~~~~~~f~-----~~g~~--------------------- 200 (467)
T PRK09556 179 LWG-------------------------ANYF----F---DGHVIGMFI-----FPSII--------------------- 200 (467)
T ss_pred HHH-------------------------HHhh----c---cCcchhHHH-----HHHHH---------------------
Confidence 111 0000 0 000000000 00000
Q ss_pred HHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHH
Q 007766 246 AVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQ 325 (590)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (590)
..++.++.+. +.++.++ +.+..++ ++. .++...++
T Consensus 201 ~~~~~i~~~~---------~~~~~p~--~~~~~~~----------~~~-------~~~~~~~~----------------- 235 (467)
T PRK09556 201 ALIIGFIGLR---------YGSDSPE--ELGWGKA----------EEI-------FGEPISEE----------------- 235 (467)
T ss_pred HHHHHHHHHH---------hCCCChh--hcCCCCh----------hhc-------ccCccchh-----------------
Confidence 0000000000 0011110 0000000 000 00000000
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHH
Q 007766 326 AKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMI 402 (590)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~ 402 (590)
++. .+++ +....+.-.++++|++.+|.+++..++....-..+...+....+ ..|.+..+ ...++.
T Consensus 236 ---------~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~ 303 (467)
T PRK09556 236 ---------DKE-TEST--DMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLF 303 (467)
T ss_pred ---------hhc-cccc--cCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 000 0000 00000001134899999999998877755543333333444444 46776543 466778
Q ss_pred HhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhc
Q 007766 403 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFG 481 (590)
Q Consensus 403 si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG 481 (590)
.+.+.+|++.+|+++||++||+.. .............+.+.... ...+++...++|++..+........+.|.+.
T Consensus 304 ~~~~~ig~~~~G~lsDr~g~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p 379 (467)
T PRK09556 304 EIGALVGSLLWGWLSDLANGRRAL----VACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVP 379 (467)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchH----HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 889999999999999999886422 11111111111111222222 2244566666775443333344567779999
Q ss_pred ccchhhhhhHHHhhhhh-HHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHH
Q 007766 482 LKSFGALYNFLTLASPA-GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLC 560 (590)
Q Consensus 482 ~k~~g~nyG~~~~a~~~-g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~ 560 (590)
.++.|+-.|++.+...+ |+.+ +|.+.|.++|.+.+.+. ... -+ ..-|+..|.+..+++
T Consensus 380 ~~~~g~a~gi~~~~g~l~g~~~-~~~~~G~i~~~~~~g~~---------------~~~---~~--~~~~~~~f~~~~~~~ 438 (467)
T PRK09556 380 KKAIGVANGIKGTFAYLFGDSF-AKVGLGMIADPTKNGTP---------------IFG---YT--LTGWAGTFAALDIAA 438 (467)
T ss_pred hhhHHHHHHHHHHHHHHHhHHH-HhhhHHHHhcccccccc---------------ccc---cc--ccChHHHHHHHHHHH
Confidence 99999999999766665 5554 79999999993221000 000 00 112999999999999
Q ss_pred HHHHHHHHHhh
Q 007766 561 IIAMVMSLIVV 571 (590)
Q Consensus 561 ~~a~vls~~l~ 571 (590)
++++++.+.+.
T Consensus 439 ~~~~~~~~~~~ 449 (467)
T PRK09556 439 IGCICLMAIVA 449 (467)
T ss_pred HHHHHHHHHHH
Confidence 99988887665
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=203.76 Aligned_cols=396 Identities=14% Similarity=0.116 Sum_probs=227.2
Q ss_pred hHHHHHHHHHHHHh-cCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHH
Q 007766 15 RWLVFVCSMWIQSC-AGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFV 92 (590)
Q Consensus 15 RW~~l~as~~i~l~-~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~ 92 (590)
||.++...++...+ ....+.++.+.|++++++|+|.+|.+++.....++. ...++.|++.||+|+|.++.++.++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 44444333333322 234467889999999999999999999866666666 4588999999999999999999999888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcCC
Q 007766 93 GYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISAN 171 (590)
Q Consensus 93 GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~ 171 (590)
+..++.+ . .++|.+++..++.|.+.+..+.+......+|||+ +||++.|+.-.+.++++.+-..+...+-
T Consensus 101 ~~~~~~~--~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~-- 171 (434)
T PRK11663 101 INILFGF--S-----SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA-- 171 (434)
T ss_pred HHHHHHH--H-----hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 7654332 1 2456666655566666666677778888999985 6999999999999998877655443320
Q ss_pred hhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Q 007766 172 ETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLII 251 (590)
Q Consensus 172 ~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (590)
+ ..+.+..+.. .++. .....+
T Consensus 172 -------------------------------~--~~gw~~~f~~-----~~i~---------------------~~~~~~ 192 (434)
T PRK11663 172 -------------------------------L--HYGWRYGMMI-----AGII---------------------AIVVGL 192 (434)
T ss_pred -------------------------------H--cccHHHHHHH-----HHHH---------------------HHHHHH
Confidence 0 0011101100 0000 000000
Q ss_pred HHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 007766 252 IILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQA 331 (590)
Q Consensus 252 ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (590)
++.. +.+++++....| +. ++ ++++.++. + ++
T Consensus 193 ~~~~---------~~~~~p~~~~~~---~~-----~~-------------~~~~~~~~-----~------~~-------- 223 (434)
T PRK11663 193 FLCW---------RLRDKPQAMGLP---SV-----GE-------------WRHDALEL-----A------QQ-------- 223 (434)
T ss_pred HHHH---------HcCCCHhhcCCC---Cc-----cc-------------cccccccc-----c------hh--------
Confidence 0000 001110000000 00 00 00000000 0 00
Q ss_pred hhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHH-HHhcCCccc--chhHHHHhhhhh
Q 007766 332 AAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS--IYVSMISIWNFL 408 (590)
Q Consensus 332 ~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~--~~Vsl~si~N~~ 408 (590)
.+ ++ +....+.-....++++.+|++.+.+++....-..+.+.+.++. +..|.+... ...+++.+.+.+
T Consensus 224 ---~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~ 294 (434)
T PRK11663 224 ---QE---GA---GLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFI 294 (434)
T ss_pred ---cc---cc---CCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 00 00 0000011012367789999987765553332111222333344 345666543 477889999999
Q ss_pred ccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhh
Q 007766 409 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL 488 (590)
Q Consensus 409 GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~n 488 (590)
||+++|+++||+.++++.+......+...+..+..+++.......++....++|+...+...+....++|.|+.++.|+-
T Consensus 295 g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 374 (434)
T PRK11663 295 GALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAA 374 (434)
T ss_pred HHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhH
Confidence 99999999999954332211111112222222211111111111223333334443333344566788999999999999
Q ss_pred hhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 489 YNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 489 yG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
.|+.....-+|..+ +|.+.|.+.|..+ |+..|.+.+++++++.+..+
T Consensus 375 ~g~~~~~~~~g~~~-~p~~~g~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 375 TGFVGLFAYLGAAL-SGYPLAKVLEIWH--------------------------------WTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHH-hcccHHHHHHhcc--------------------------------cHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876 7999999999655 88899999988888766554
Q ss_pred H
Q 007766 569 I 569 (590)
Q Consensus 569 ~ 569 (590)
.
T Consensus 422 ~ 422 (434)
T PRK11663 422 P 422 (434)
T ss_pred H
Confidence 3
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=203.69 Aligned_cols=385 Identities=13% Similarity=0.074 Sum_probs=247.4
Q ss_pred hhhcccchHHHHHHHHHHHHhcCc-ccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHH
Q 007766 8 LKSFVNNRWLVFVCSMWIQSCAGI-GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLI 85 (590)
Q Consensus 8 ~~~~~~~RW~~l~as~~i~l~~Gt-~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~i 85 (590)
.+++.+++|.+++.+.++....+- .+.++...|++++++|+|.+|.+++.....++..+ .++.|.+.||+|+|.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 6 SSASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 346677999999999888887665 57889999999999999999999987777777754 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHH
Q 007766 86 GVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQI 164 (590)
Q Consensus 86 G~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i 164 (590)
+.++..++..+..+ . .+++.+.+..++.|.+.+..+++......++|| ++||++.|+...+..+++.+-..+
T Consensus 86 ~~~~~~~~~~~~~~--~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 86 SVALFGLFSLATAQ--A-----WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred HHHHHHHHHHHHHH--h-----ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777654332 1 235666667777788888888888888999997 579999999988888887665433
Q ss_pred HHHhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHH
Q 007766 165 YIMISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTV 244 (590)
Q Consensus 165 ~~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 244 (590)
...+. + ..+.+..+ .+.. .
T Consensus 159 ~~~~~---------------------------------~--~~~~~~~~-----------~~~~---------------~ 177 (406)
T PRK11551 159 GVLAA---------------------------------G--DAAWRHIF-----------YVGG---------------V 177 (406)
T ss_pred HHHHc---------------------------------c--ccCHHHHH-----------HHHH---------------H
Confidence 32210 0 00111111 0000 0
Q ss_pred HHHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHH
Q 007766 245 LAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHL 324 (590)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (590)
......+++.. +.++ .| ++. + .++.+. + + + +..
T Consensus 178 ~~~~~~~~~~~---------~l~~------~~--~~~---~---------------~~~~~~-~------~--~-~~~-- 210 (406)
T PRK11551 178 GPLLLVPLLMR---------WLPE------SR--AFA---Q---------------AAGAGK-Q------R--A-PVL-- 210 (406)
T ss_pred HHHHHHHHHHH---------hCCC------Ch--hHH---h---------------ccCcch-h------h--h-hhH--
Confidence 00000000000 0010 11 000 0 000000 0 0 0 000
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHH
Q 007766 325 QAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMI 402 (590)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~ 402 (590)
... .++ .+.+..+.+++.+++....-..+.+.+..+.++.|.+... ...++.
T Consensus 211 ----------~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~ 264 (406)
T PRK11551 211 ----------RAL-FGE---------------GRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAF 264 (406)
T ss_pred ----------HHH-hhh---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHH
Confidence 000 000 0112233444443333322233344556666777776543 467788
Q ss_pred HhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhc
Q 007766 403 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG 481 (590)
Q Consensus 403 si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG 481 (590)
.+.+..|++.+|+++||++|++.. ....+...++.+.+.. .....+++...+.|++.++.....++++.|.+.
T Consensus 265 ~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 338 (406)
T PRK11551 265 NIGGALGSLLIGALMDRLRPRRVV------LLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYP 338 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 899999999999999999886532 2233333333333322 223356677788899998899999999999999
Q ss_pred ccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHH
Q 007766 482 LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCI 561 (590)
Q Consensus 482 ~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~ 561 (590)
.++.|+..|+..+...+|+.+ +|.++|.++|... -|...|.+...+++
T Consensus 339 ~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~~-------------------------------~~~~~~~~~~~~~~ 386 (406)
T PRK11551 339 TQVRGTGVGAAVAVGRLGSMA-GPLLAGQLLALGR-------------------------------STVGVIGASIPVIL 386 (406)
T ss_pred hhhhhhhhhHHHHhhhHHHHH-HhhhHhhhhccCC-------------------------------chHHHHHHHHHHHH
Confidence 999999999999999999886 7999999998644 16777777777777
Q ss_pred HHHHHHHHhh
Q 007766 562 IAMVMSLIVV 571 (590)
Q Consensus 562 ~a~vls~~l~ 571 (590)
++.++++++.
T Consensus 387 ~~~~~~~~~~ 396 (406)
T PRK11551 387 VAALAALLLV 396 (406)
T ss_pred HHHHHHHHHh
Confidence 7777766554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-20 Score=198.21 Aligned_cols=372 Identities=13% Similarity=0.056 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHH
Q 007766 16 WLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVG 93 (590)
Q Consensus 16 W~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~G 93 (590)
|..+. ..++.+..... +..+...|++++++|+|.+|++++.....++. ...++.|++.||+|+|.++.+|.++..+|
T Consensus 9 ~~~~~-~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 9 FMLLV-LVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHH-HHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 44333 44444444433 56889999999999999999999755555555 45899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHhcCChh
Q 007766 94 YGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANET 173 (590)
Q Consensus 94 Y~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~ 173 (590)
..+. +..+ +++.+.+.-++.|.|.+..+........|+||++||++.|+..++..+++.+-..+...+
T Consensus 88 ~~~~-----~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l----- 155 (393)
T PRK09705 88 ALMR-----ELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWL----- 155 (393)
T ss_pred HHHH-----HHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 8653 3333 356666678888999988877777777889999999999998877766666554433221
Q ss_pred hHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Q 007766 174 SLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIII 253 (590)
Q Consensus 174 ~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll 253 (590)
. + ...+.+..+. .+.+ ..+. .++.
T Consensus 156 ------------~----------------~-~~~~w~~~~~--------~~~~------------------~~~~-~~~~ 179 (393)
T PRK09705 156 ------------V----------------Q-HSETWYQTLA--------WWAL------------------PAVV-ALFA 179 (393)
T ss_pred ------------H----------------H-hcCCHHHHHH--------HHHH------------------HHHH-HHHH
Confidence 0 0 0000000000 0000 0000 0000
Q ss_pred HhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhh
Q 007766 254 LLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAA 333 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (590)
..+ . . .++| + ++++
T Consensus 180 ~~~----~-----~-----~~~~---~----------------------~~~~--------------------------- 193 (393)
T PRK09705 180 WWW----Q-----S-----AREV---A----------------------SSHK--------------------------- 193 (393)
T ss_pred HHH----H-----h-----cCCC---c----------------------cccC---------------------------
Confidence 000 0 0 0011 0 0000
Q ss_pred hhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccc
Q 007766 334 EGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRV 411 (590)
Q Consensus 334 ~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl 411 (590)
+ + .+.++.++++++|.+.+.+++....-..+.+.+.++.++.|.+... ...+++++++.+||+
T Consensus 194 ------~----~-----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~ 258 (393)
T PRK09705 194 ------T----T-----TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGAL 258 (393)
T ss_pred ------C----C-----cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHH
Confidence 0 0 0113467788999888776655443334455566777777776543 488899999999999
Q ss_pred cccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhc-ccchhhhhh
Q 007766 412 GGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYN 490 (590)
Q Consensus 412 ~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG-~k~~g~nyG 490 (590)
.+|+++||++|++.. .....+..++.+.+....+....+...+.|+..|+.+......+.|.+. .++-|+.+|
T Consensus 259 ~~g~l~~r~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g 332 (393)
T PRK09705 259 LMPAMARHQDRRKLL------MLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVA 332 (393)
T ss_pred HHHHHHhhccchHHH------HHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999999885422 2333344444333322111112233456788899888888888888886 467799999
Q ss_pred HHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 491 FLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 491 ~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
+......+++.+ +|.++|.+.|..+ -|+..|.+.+.+++++.+..+++
T Consensus 333 ~~~~~~~~~~~~-gp~~~G~l~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 333 FMQGIGFIIAGL-APWFSGVLRSISG-------------------------------NYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhC-------------------------------CchHHHHHHHHHHHHHHHHHHHh
Confidence 988887887775 7999999999766 28999999999888877776554
Q ss_pred hhhhh
Q 007766 571 VHRTK 575 (590)
Q Consensus 571 ~~r~r 575 (590)
..+||
T Consensus 381 ~~~~~ 385 (393)
T PRK09705 381 APARF 385 (393)
T ss_pred ccccc
Confidence 43333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=209.24 Aligned_cols=393 Identities=14% Similarity=0.161 Sum_probs=224.9
Q ss_pred chHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHH
Q 007766 14 NRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFV 92 (590)
Q Consensus 14 ~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~ 92 (590)
++|..+.......+..-..|.++.+.|.+.+.+|+|.+|.+++.....++..+ .++.|.+.||+|+|.++.++.++..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34555555555555555668899999999999999999999987667777665 58999999999999999999988777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCC
Q 007766 93 GYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISAN 171 (590)
Q Consensus 93 GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~ 171 (590)
+..+..+ .+ +++.+.+..++.|.+.+.. ..+.....+||| ++||++.|+..+...+++.+-..+...
T Consensus 114 ~~~~~~~-----~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~---- 181 (476)
T PLN00028 114 AVFCMSL-----VS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL---- 181 (476)
T ss_pred HHHHHHH-----hc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 7544322 22 2444544445555554432 334444668897 579999999876555555443322211
Q ss_pred hhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Q 007766 172 ETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLII 251 (590)
Q Consensus 172 ~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (590)
+...+... ...+..+.+..+.. .++. ..+..+
T Consensus 182 -------------i~~~~~~~---------~~~~~~gWr~~f~i-----~g~l---------------------~l~~~l 213 (476)
T PLN00028 182 -------------VFPLIKDA---------GAPSFTAWRIAFFV-----PGLL---------------------HIIMGI 213 (476)
T ss_pred -------------HHHHHHhc---------CCcchhhhHHHHHH-----HHHH---------------------HHHHHH
Confidence 00000000 00000111111100 0000 000000
Q ss_pred HHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 007766 252 IILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQA 331 (590)
Q Consensus 252 ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (590)
+... +.++ .| +. + . .+.+++
T Consensus 214 ~~~~---------~~~~------~p---~~---~--~------------~~~~~~------------------------- 233 (476)
T PLN00028 214 LVLT---------LGQD------LP---DG---N--Y------------RELKKS------------------------- 233 (476)
T ss_pred HHHH---------HcCc------CC---CC---c--h------------hhHHhc-------------------------
Confidence 0000 0000 01 10 0 0 000000
Q ss_pred hhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhh
Q 007766 332 AAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFL 408 (590)
Q Consensus 332 ~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~ 408 (590)
++. + +. .....+++.++++++|++++++++..+....+.+.+....+ ..|.+... ...+++.+++.+
T Consensus 234 ---~~~--~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~i 303 (476)
T PLN00028 234 ---GTM--P----KD-SFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLF 303 (476)
T ss_pred ---Ccc--c----cc-cHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 000 0 00 00123567899999999999887766655555555555554 45776543 477889999999
Q ss_pred ccccccchhhhhhhccCC-chhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHh----hhhccchhhHHHHHHhhcc
Q 007766 409 GRVGGGYFSEAIVRKFAY-PRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGL----SYGAHWAIVPAAASELFGL 482 (590)
Q Consensus 409 GRl~~G~lSD~l~r~~~~-~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~----~yG~~~~l~P~i~ad~FG~ 482 (590)
||+++|+++||++||++. .|.+.+.+...+..+.++++.... .....+..++.++ ++|..+++.| + +++
T Consensus 304 g~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~ 378 (476)
T PLN00028 304 ARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----F-VSR 378 (476)
T ss_pred HHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----c-cCh
Confidence 999999999999987543 244554444444444333332221 1222223333333 5565665555 3 367
Q ss_pred cchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHH
Q 007766 483 KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCII 562 (590)
Q Consensus 483 k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~ 562 (590)
|+.|+++|++..+..+|+.+ ++ .++|.+.. .-|+.+|.+.+++.++
T Consensus 379 ~~~g~~~g~~~~~g~lg~~i-~~----~l~~~~~~-----------------------------~~y~~~f~~~~~~~~i 424 (476)
T PLN00028 379 RSLGVISGLTGAGGNVGAVL-TQ----LLFFTGSS-----------------------------YSTETGISLMGVMIIA 424 (476)
T ss_pred hhchhhhhhhhccccHHHHH-HH----HHHHhcCC-----------------------------ccHhhHHHHHHHHHHH
Confidence 89999999997766666654 34 45553220 0399999999999999
Q ss_pred HHHHHHHhhhhhh
Q 007766 563 AMVMSLIVVHRTK 575 (590)
Q Consensus 563 a~vls~~l~~r~r 575 (590)
+.++.+++++.+|
T Consensus 425 ~~~~~~~~~~~~~ 437 (476)
T PLN00028 425 CTLPVAFIHFPQW 437 (476)
T ss_pred HHHHHHheeccch
Confidence 9888877754443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=192.43 Aligned_cols=381 Identities=17% Similarity=0.123 Sum_probs=239.8
Q ss_pred ccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 007766 32 GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPL 110 (590)
Q Consensus 32 ~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~ 110 (590)
.+.++...|.+++++|+|.++.+++.....++.. ..++.|.+.||+|+|.++.++.++..++..+..+. .++
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 82 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAY 82 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCH
Confidence 4677888899999999999999998777777765 47899999999999999999999888887664432 146
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHh
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMA 189 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~ 189 (590)
|.+.+..++.|.+.+...++......+++| ++||.+.|+.....++++.+-..+...+.
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-------------------- 142 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-------------------- 142 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--------------------
Confidence 667777778888888888888889999998 56999999999999998877765554320
Q ss_pred hheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCC
Q 007766 190 FMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEP 269 (590)
Q Consensus 190 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 269 (590)
+ ..+.+..+.. .++. ..+..++... ..+++
T Consensus 143 -------------~--~~~~~~~~~~-----~~~~---------------------~~~~~~~~~~---------~~~~~ 172 (399)
T TIGR00893 143 -------------I--HFSWQWAFII-----EGVL---------------------GIIWGVLWLK---------FIPDP 172 (399)
T ss_pred -------------H--hCCchHHHHH-----HHHH---------------------HHHHHHHhhh---------eecCC
Confidence 0 0011101100 0000 0000000000 00111
Q ss_pred CCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007766 270 PPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGE 349 (590)
Q Consensus 270 ~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 349 (590)
++ ++ . . . .+++++.. .+.... + .+ .++ +.+..
T Consensus 173 ~~---~~---~----~-~-~~~~~~~~----~~~~~~-~--------------------------~~--~~~---~~~~~ 204 (399)
T TIGR00893 173 PQ---KA---K----W-L-TEEEKYIV----VGGLLA-E--------------------------QQ--GKG---PSTPK 204 (399)
T ss_pred CC---cc---c----c-C-CHHHHhhc----chhhcc-c--------------------------cc--ccc---ccCCC
Confidence 00 00 0 0 0 00000000 000000 0 00 000 11112
Q ss_pred CCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCC
Q 007766 350 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 426 (590)
Q Consensus 350 d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~ 426 (590)
..+.++.++++++|.+++..++......++........++ .|.+... ...++..+.+.+|++.+|+++||++||+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 284 (399)
T TIGR00893 205 KYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS 284 (399)
T ss_pred ccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3456789999999999998888777766666666666654 5655432 467788899999999999999999997521
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhh
Q 007766 427 PRPVAMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 427 ~R~~~l~~~~~l~~~~~l~~~~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~ 504 (590)
...............+....... ......+...+++....+......++++|.+..++.|+.+|+......+|..+ +
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~ 363 (399)
T TIGR00893 285 LVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV-G 363 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhh-h
Confidence 00000011111111111111111 12223333333444333378889999999999999999999999999999986 6
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
|.+.|.++|..+ .|+..|.+.+.+++++.++.++
T Consensus 364 ~~i~g~l~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 364 PIVIGAIAATTG-------------------------------SFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hHHhhhhccCCC-------------------------------chhHHHHHHHHHHHHHHHHHHH
Confidence 889999998655 3888999998888887776654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=193.64 Aligned_cols=377 Identities=16% Similarity=0.141 Sum_probs=242.9
Q ss_pred ccchHHHHHHHHHHHHhcCc-ccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHH
Q 007766 12 VNNRWLVFVCSMWIQSCAGI-GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQ 89 (590)
Q Consensus 12 ~~~RW~~l~as~~i~l~~Gt-~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l 89 (590)
+.|||.....+.+.....|. .+.++...|++++++|+|.+|+.++.....++..+ .+++|++.||+|+|.++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46777766666555555544 58899999999999999999999986666677654 67999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 90 NFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 90 ~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
..++..+..+ . .+++.+.+..++.|.+.+..++.+.....++||+ +||.+.++.-..+++++.+...+...+
T Consensus 82 ~~i~~~l~~~-----~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 82 MILAVAGLMF-----S--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHHH-----c--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777655332 1 2356566666666777777777777778899986 589999988888888877665443322
Q ss_pred cCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Q 007766 169 SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVG 248 (590)
Q Consensus 169 ~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~ 248 (590)
+ .+ ..+.+..+.. .++. ..+
T Consensus 155 --------~------------------------~~--~~gw~~~f~~-----~~~~---------------------~~~ 174 (394)
T PRK03699 155 --------L------------------------AR--SIEWYWVYAC-----IGLV---------------------YVA 174 (394)
T ss_pred --------H------------------------hc--cccHHHHHHH-----HHHH---------------------HHH
Confidence 0 00 0011111100 0000 000
Q ss_pred HHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 007766 249 LIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKL 328 (590)
Q Consensus 249 ~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (590)
.. ++... .+ .| +. + ++++++
T Consensus 175 ~~-~~~~~---------~~-------~p---~~---~-----------------~~~~~~-------------------- 194 (394)
T PRK03699 175 IF-ILTLF---------SE-------FP---AL---G-----------------KHAPKA-------------------- 194 (394)
T ss_pred HH-HHHHh---------cC-------Cc---cc---c-----------------ccCccc--------------------
Confidence 00 00010 00 01 00 0 000000
Q ss_pred HHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhh
Q 007766 329 FQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIW 405 (590)
Q Consensus 329 ~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~ 405 (590)
. + +.... ..++.+|++.+.+++....-..+.+-+..+.+ ..|.+..+ ..++++.++
T Consensus 195 ------~----~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~ 253 (394)
T PRK03699 195 ------D----K----PVAKE-------KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMA 253 (394)
T ss_pred ------c----C----ccccc-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHH
Confidence 0 0 00000 11367788877766654332233344555664 45766543 478889999
Q ss_pred hhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccc
Q 007766 406 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS 484 (590)
Q Consensus 406 N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~ 484 (590)
+.+||+.+|+++||++|++.. .....+.++..+++.. .....+.+...+.|++.|+.+++..+...|.. .++
T Consensus 254 ~~ig~~~~g~l~dr~~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~ 326 (394)
T PRK03699 254 YMVGMWIFSFIVRFFDLQRIL------TVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVA 326 (394)
T ss_pred HHHHHHHHHHHHHHhchhhHH------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCC
Confidence 999999999999999886532 2222233333333322 23334566778889999988888888888755 667
Q ss_pred hhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 007766 485 FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM 564 (590)
Q Consensus 485 ~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~ 564 (590)
.++.+|++.....+|+.+ +|.+.|.++|..+ ++.+|.+.+++++++.
T Consensus 327 ~~~~~g~~~~~~~~g~~i-~p~~~G~l~~~~g--------------------------------~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 327 SPKLVNFILTCGTIGTML-TFVVTSPIVAHFG--------------------------------LQAALLTANGLYAVVF 373 (394)
T ss_pred CHHHHHHHHHhhhHHHHH-HHHHHHHHHHHhC--------------------------------chhhhhhhHHHHHHHH
Confidence 788899998888899876 7999999999655 7888999999999998
Q ss_pred HHHHHhhhhhhH
Q 007766 565 VMSLIVVHRTKS 576 (590)
Q Consensus 565 vls~~l~~r~r~ 576 (590)
++++.+.+-.||
T Consensus 374 ~~~~~~~~~~~~ 385 (394)
T PRK03699 374 VMCILLGFVSKH 385 (394)
T ss_pred HHHHHHHHHHHH
Confidence 887776655554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-18 Score=182.64 Aligned_cols=368 Identities=12% Similarity=0.070 Sum_probs=231.8
Q ss_pred cchHHHHHHHHHHHHhc-CcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHH
Q 007766 13 NNRWLVFVCSMWIQSCA-GIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQN 90 (590)
Q Consensus 13 ~~RW~~l~as~~i~l~~-Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~ 90 (590)
.+||..+..-.+.+... -..|.-+..-|++++++|+|++|++++.....++. ...++.|.+.||+|+|.++.++.++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34665444434433333 33344555678999999999999999755555555 35688999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhc
Q 007766 91 FVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMIS 169 (590)
Q Consensus 91 ~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~ 169 (590)
.++..+..+ . .++|++.+.-++.|.+.+..++.......+++| ++||++.|+.....+++..+-..+...+
T Consensus 85 ~~~~~~~~~-----~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l- 156 (390)
T PRK03545 85 IASHVLSAL-----A--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI- 156 (390)
T ss_pred HHHHHHHHH-----h--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH-
Confidence 888655332 2 246666666666777777777777777888997 5899999999888888876665444322
Q ss_pred CChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Q 007766 170 ANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGL 249 (590)
Q Consensus 170 ~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~ 249 (590)
. + ..+.+..+.. .++ ...+.
T Consensus 157 --------------------~------------~--~~gw~~~f~~-----~~~---------------------~~~l~ 176 (390)
T PRK03545 157 --------------------G------------Q--YLGWRTTFLA-----IGG---------------------GALIT 176 (390)
T ss_pred --------------------H------------H--HhcHHHHHHH-----HHH---------------------HHHHH
Confidence 0 0 0011101100 000 00000
Q ss_pred HHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 007766 250 IIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLF 329 (590)
Q Consensus 250 ~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (590)
.++... .. | ++| + +++
T Consensus 177 ~~~~~~---------~~--~----~~~---~----------------------~~~------------------------ 192 (390)
T PRK03545 177 LLLLIK---------LL--P----LLP---S----------------------EHS------------------------ 192 (390)
T ss_pred HHHHHH---------hC--C----CCC---C----------------------CCc------------------------
Confidence 000000 00 0 000 0 000
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhh
Q 007766 330 QAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWN 406 (590)
Q Consensus 330 ~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N 406 (590)
+ + ..+.++.+|++++|.++...++......+..+.+.++.++ .|.+... ...+++++.+
T Consensus 193 -----~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~ 254 (390)
T PRK03545 193 -----G---------S----LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAG 254 (390)
T ss_pred -----c---------h----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 0 0 0113578899999877766554443333333444555554 4655543 3677889999
Q ss_pred hhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH-Hh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccc
Q 007766 407 FLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY-AI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS 484 (590)
Q Consensus 407 ~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~-~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~ 484 (590)
..|++..|+++||.+|+. . .+...+..++.+++ .. .....+++..++.|+++++......+.+.|... ++
T Consensus 255 ~~g~~~~g~l~dr~~~~~------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~ 326 (390)
T PRK03545 255 IIGSVLFSRLGNRHPSGF------L-LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA 326 (390)
T ss_pred HHHHHHHHHHhhccchhH------H-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc
Confidence 999999999999987642 1 22222222222222 22 223456778888899888777777788888765 67
Q ss_pred hhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 007766 485 FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM 564 (590)
Q Consensus 485 ~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~ 564 (590)
.|+-.|+.+...-+|..+ ++.+.|.++|..+ ++..|.+.+.+.++++
T Consensus 327 ~~~~~g~~~~~~~~g~~~-G~~~~G~~~~~~g--------------------------------~~~~~~~~~~~~~~~~ 373 (390)
T PRK03545 327 TDVAMALFSGIFNIGIGA-GALLGNQVSLHLG--------------------------------LSSIGYVGAALALAAL 373 (390)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC--------------------------------hhHHHHHHHHHHHHHH
Confidence 788888887777777765 7889999999766 8899999999988888
Q ss_pred HHHHHhh
Q 007766 565 VMSLIVV 571 (590)
Q Consensus 565 vls~~l~ 571 (590)
+.++...
T Consensus 374 ~~~~~~~ 380 (390)
T PRK03545 374 VWSILIF 380 (390)
T ss_pred HHHHHHc
Confidence 8876444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=187.37 Aligned_cols=406 Identities=13% Similarity=0.146 Sum_probs=229.8
Q ss_pred hcccchHHHHHHHHHHHHhcCc-ccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAGI-GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGV 87 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~Gt-~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~ 87 (590)
+..+.||..+.+..+...+... ...++...|.+++ +|+|++|..++.....++.. ..++.|++.||+|+|..+.+|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~ 98 (438)
T TIGR00712 20 TYKRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGL 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHH
Confidence 3344578777666665544443 3445666777876 59999999997666666664 5799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHH
Q 007766 88 LQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYI 166 (590)
Q Consensus 88 ~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~ 166 (590)
++..+++.+.... . .. ..+++.+++..++.|.+.+..+........++|| ++||++.|+.-...++++.+...+..
T Consensus 99 ~~~~~~~~~~~~~-~-~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 99 ILSAAVMLLMGFV-P-WA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHhcc-c-cc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 8888887653321 1 11 1235555556666666666666667777789997 57999999988888888777665543
Q ss_pred Hh-cCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHH
Q 007766 167 MI-SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVL 245 (590)
Q Consensus 167 ~~-~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 245 (590)
.. .. ..+.+..+. ..++..
T Consensus 176 ~~~~~-----------------------------------~~~w~~~f~-----~~~~~~-------------------- 195 (438)
T TIGR00712 176 LGMAW-----------------------------------FNDWHAALY-----FPAICA-------------------- 195 (438)
T ss_pred HHHHH-----------------------------------hhhhHHHHH-----HHHHHH--------------------
Confidence 22 00 000000000 000000
Q ss_pred HHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHH
Q 007766 246 AVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQ 325 (590)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (590)
++..+++.. +.+++++ ++-.++. + . .+++.+++ . . ++
T Consensus 196 -~i~~~~~~~---------~~~~~~~---~~~~~~~---~--~------------~~~~~~~~-~-~-~~---------- 232 (438)
T TIGR00712 196 -IIVALFAFA---------MMRDTPQ---SCGLPPI---E--E------------YRNDYPDD-Y-N-EK---------- 232 (438)
T ss_pred -HHHHHHHHH---------hccCCHH---hcCCCCc---h--h------------cccccccc-c-c-cc----------
Confidence 000000000 0111100 0000000 0 0 00000000 0 0 00
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHH
Q 007766 326 AKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMI 402 (590)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~ 402 (590)
. ++ +.+..+...++.+|++.||.+.+..++....-..+...+.++.++ .|.+... ...+++
T Consensus 233 ---------~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 296 (438)
T TIGR00712 233 ---------A----EQ---ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLY 296 (438)
T ss_pred ---------c----cc---ccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHH
Confidence 0 00 000001112347899999999776555443222333455555655 4655433 466788
Q ss_pred HhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhccchhhHHHHHHh
Q 007766 403 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479 (590)
Q Consensus 403 si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~---~~~~l~~~~~liG~~yG~~~~l~P~i~ad~ 479 (590)
++.+..|++.+|+++||++++++.. ..........++.+++... .....++...++|+...+.....-..+.|.
T Consensus 297 ~~~~~ig~~~~g~l~dr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 373 (438)
T TIGR00712 297 EYAGIPGTLLCGWMSDKVFKGNRGA---TGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALEL 373 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccH---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 9999999999999999997654321 1111111122222222211 122233333444443222222223467899
Q ss_pred hcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHH
Q 007766 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGL 559 (590)
Q Consensus 480 FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~ 559 (590)
++.|+.|+..|+.....-+|+..++|.+.|.+.|..+ |..+|.+..+.
T Consensus 374 ~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g--------------------------------~~~~~~~~~~~ 421 (438)
T TIGR00712 374 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--------------------------------WDGGFMVMIGG 421 (438)
T ss_pred cChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc--------------------------------chHHHHHHHHH
Confidence 9999999999999776666655457889999998654 89999999999
Q ss_pred HHHHHHHHHHhhhh
Q 007766 560 CIIAMVMSLIVVHR 573 (590)
Q Consensus 560 ~~~a~vls~~l~~r 573 (590)
+++++++.+++...
T Consensus 422 ~~~~~~~~~~~~~~ 435 (438)
T TIGR00712 422 SILAVILLIVVMIG 435 (438)
T ss_pred HHHHHHHHHHHHhh
Confidence 98988888765543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=181.13 Aligned_cols=356 Identities=14% Similarity=0.173 Sum_probs=219.1
Q ss_pred cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 007766 31 IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLP 109 (590)
Q Consensus 31 t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~ 109 (590)
....|+...|.+++++|+|.+|.+++.....++.. ..++.|++.||+|+|.++.+|.++..++..+..++ .+
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 82 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TS 82 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hh
Confidence 34567888899999999999999998777777775 47999999999999999999999988887665442 14
Q ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHH-hcCChhhHHHHHHHhhHHHH
Q 007766 110 LWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIM-ISANETSLIFLVAVGPSIVV 187 (590)
Q Consensus 110 ~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~-~~~~~~~fllfla~~~~~v~ 187 (590)
+|++.+..++.|.+.+..+........+++|+ +||.+.|+......+++.+-.++... +..
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------- 145 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE----------------- 145 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-----------------
Confidence 56677777788888888888888899999985 69999999988888887776532221 100
Q ss_pred HhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceeccccc
Q 007766 188 MAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFT 267 (590)
Q Consensus 188 l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 267 (590)
..+.+..+.. .+.. ..+..++... +.+
T Consensus 146 ------------------~~~~~~~~~~-----~~~~---------------------~~~~~~~~~~---------~~~ 172 (379)
T TIGR00881 146 ------------------LYSWHWVFIV-----PGII---------------------AIIVSLICFL---------LLR 172 (379)
T ss_pred ------------------cCCchhHHHH-----HHHH---------------------HHHHHHHHhe---------eeC
Confidence 0011111100 0000 0000000000 001
Q ss_pred CCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 007766 268 EPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRR 347 (590)
Q Consensus 268 ~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 347 (590)
++++..+.+ ++ ++.+. .+.++.++ .+ ++ +.+
T Consensus 173 ~~~~~~~~~--~~---~~~~~------------~~~~~~~~--------------------------~~---~~---~~~ 203 (379)
T TIGR00881 173 DSPQSCGLP--PA---EEMPN------------EEPDGDAE--------------------------KK---EE---ELT 203 (379)
T ss_pred CCccccccC--cc---ccCcc------------cccccccc--------------------------cc---cc---ccc
Confidence 111000000 00 00000 00000000 00 00 000
Q ss_pred CCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhcc
Q 007766 348 GEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKF 424 (590)
Q Consensus 348 ~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~ 424 (590)
..+...+++++++.+|++.+..++....-..+........+ ..|.+... ...++..+.+.+|++++|+++||..+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 204 KKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 11234568899999999988776655433333333444443 45665443 4677889999999999999999975544
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHH
Q 007766 425 AYPRPVAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 501 (590)
Q Consensus 425 ~~~R~~~l~~~~~l~~~~~l~~~~~---~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~ 501 (590)
.. ...........++.+.+... ....+.+...+.|+..++.....+.++.|.+..++-|+.+|+..+...+|+.
T Consensus 284 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 360 (379)
T TIGR00881 284 RG---PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI 360 (379)
T ss_pred ch---HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh
Confidence 32 11112222222222222211 1223445566677766667777788999999999999999999999999988
Q ss_pred HhhHhHHHHHHhhhh
Q 007766 502 IFSGVIASGIYDYYA 516 (590)
Q Consensus 502 i~~~~l~g~iyd~~~ 516 (590)
+ +|.+.|.+.|..+
T Consensus 361 ~-~~~~~g~l~~~~g 374 (379)
T TIGR00881 361 L-AGLPLGYLADGFG 374 (379)
T ss_pred h-hhhhHHHHHHhhc
Confidence 6 7889999999765
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=177.43 Aligned_cols=358 Identities=14% Similarity=0.142 Sum_probs=217.2
Q ss_pred cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHH-hcCCCCc
Q 007766 31 IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIV-TNRLPSL 108 (590)
Q Consensus 31 t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~-~g~i~s~ 108 (590)
......+....+++++|+|.+++.++..+..++.. ..++.|.+.||+|+|.++.++.++..++.....+.. .+.....
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence 33455566677899999999999998777777765 589999999999999999999988777765544321 1111112
Q ss_pred hHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHH
Q 007766 109 PLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVV 187 (590)
Q Consensus 109 ~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~ 187 (590)
.++.+++..++.|.|.+..+.++.....+++| ++||++.|+......++..+-..+...+
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l------------------- 171 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL------------------- 171 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH-------------------
Confidence 34556666778888888888877777788886 6799999987665555543333222211
Q ss_pred HhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceeccccc
Q 007766 188 MAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFT 267 (590)
Q Consensus 188 l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 267 (590)
.. ..+ +.. .+.+.. . ...+.+++. ..
T Consensus 172 --~~--------------~~g--~~~---------~~~~~~---------------~--~~~~~~~~~----------~~ 197 (399)
T PRK05122 172 --YH--------------WGG--LAG---------LGLLIM---------------L--LALLGLLLA----------RP 197 (399)
T ss_pred --HH--------------ccc--HHH---------HHHHHH---------------H--HHHHHHHHH----------hc
Confidence 00 000 000 000000 0 000000000 00
Q ss_pred CCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 007766 268 EPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRR 347 (590)
Q Consensus 268 ~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 347 (590)
.+ + ++ ++ ++++
T Consensus 198 ~~-~---~~--~~----------------------~~~~----------------------------------------- 208 (399)
T PRK05122 198 RP-A---VP--PV----------------------KGER----------------------------------------- 208 (399)
T ss_pred CC-C---CC--CC----------------------Cccc-----------------------------------------
Confidence 00 0 00 00 0000
Q ss_pred CCCCCHHHhhhcHHHHHHHHHHHhh-hcccceeecchHHHHHHhcCCcccchhHHHHhhhhhccccccchhhhhhhccCC
Q 007766 348 GEDFTLPQALMKADFLLLFFSLVLA-SGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAY 426 (590)
Q Consensus 348 ~~d~t~~~~l~~~~Fwll~~~~~~~-~g~Glm~i~n~~~I~~s~g~~~~~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~ 426 (590)
.++++.++ ++|.....+.+. .+.+. +...+....++.+.+......+++.+....||+..|+++||++|++.
T Consensus 209 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~- 281 (399)
T PRK05122 209 ---LPFRRVLG--RVWPYGMGLALASIGFGT-IATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRV- 281 (399)
T ss_pred ---hhHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-
Confidence 00111222 122222111111 11111 11222233344555444456778899999999999999999987542
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhH
Q 007766 427 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG 505 (590)
Q Consensus 427 ~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~ 505 (590)
+.....++.++.+.+.. .....+.+..++.|+++|..+......+.|.+..++.|+.+|+..+...+|..+ ++
T Consensus 282 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~ 355 (399)
T PRK05122 282 -----AIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TG 355 (399)
T ss_pred -----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 23333444444433332 223456677788999999888888888899999999999999999998898876 57
Q ss_pred hHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007766 506 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK 575 (590)
Q Consensus 506 ~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r 575 (590)
.+.|.+.|..+ |+.+|.+.++++++++++.+.+.++++
T Consensus 356 ~~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 356 PLAGLVASWFG--------------------------------YPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHcC--------------------------------HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 78999988644 899999999999888877776554444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-18 Score=177.95 Aligned_cols=151 Identities=12% Similarity=0.096 Sum_probs=120.3
Q ss_pred hcccchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGV 87 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~ 87 (590)
+..+++|..+.+..+.....+-. +.++...+++++++|+|.+|..++.....++.. ..++.|.+.||+|+|.++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34568888877777777666654 667888899999999999999997666666654 5899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHH
Q 007766 88 LQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYI 166 (590)
Q Consensus 88 ~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~ 166 (590)
++..++..+..+ . .+++.+++..++.|.+.+..+.++.....+++| ++||.+.|+...+.+++..+-..+..
T Consensus 85 ~~~~~~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 85 VLFSAGTLACGF-----A--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHHHHHHHH-----h--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887655332 2 246777777888888888888888888899998 57999999999998988877665554
Q ss_pred H
Q 007766 167 M 167 (590)
Q Consensus 167 ~ 167 (590)
.
T Consensus 158 ~ 158 (405)
T TIGR00891 158 L 158 (405)
T ss_pred H
Confidence 3
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=177.55 Aligned_cols=382 Identities=14% Similarity=0.093 Sum_probs=230.5
Q ss_pred ccchHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHH
Q 007766 12 VNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQN 90 (590)
Q Consensus 12 ~~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~ 90 (590)
.++.+...++....+...+..|. |-+++.+++|+|.+|..++.....++. ...++.|++.||+|+|.++.++.++.
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~ 88 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQG---WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLW 88 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHH---hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 34556667777777777776654 345666789999999999755555655 45899999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhc
Q 007766 91 FVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMIS 169 (590)
Q Consensus 91 ~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~ 169 (590)
.++..+. ...+.. ..+++.+.+..++.|.|.+....+......+++| ++||++.|+..+..+++..++.++....
T Consensus 89 ~~~~~~~--~~~~~~-~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~- 164 (402)
T TIGR00897 89 CVGHAAF--IVFGLG-HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY- 164 (402)
T ss_pred HHHHHHH--HHHhcc-CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 7775432 112222 1235555556666677766555555666677775 6899999999988888765554333221
Q ss_pred CChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Q 007766 170 ANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGL 249 (590)
Q Consensus 170 ~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~ 249 (590)
.+ + ..+..... . ...+. +..
T Consensus 165 -----------------------l~---~-------~~g~~~~~-~-----~~~~~---------------------~~~ 184 (402)
T TIGR00897 165 -----------------------AI---P-------AFGEMNTL-W-----SALAF---------------------VLT 184 (402)
T ss_pred -----------------------cc---c-------ccchHHHH-H-----HHHHH---------------------HHH
Confidence 00 0 00000000 0 00000 000
Q ss_pred HHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 007766 250 IIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLF 329 (590)
Q Consensus 250 ~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (590)
..++.. . ..+++ ++| +. ++ ++++ .+|
T Consensus 185 ~~~~~~-~-------~~~~~----~~~---~~--------------------~~-~~~~------------~~~------ 210 (402)
T TIGR00897 185 GGVIAL-F-------SNKDI----FTP---QH--------------------MQ-TREK------------FSE------ 210 (402)
T ss_pred HHHHHH-h-------ccCCC----CCc---cc--------------------cc-CCcc------------hhh------
Confidence 000000 0 00100 001 00 00 0000 000
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhh
Q 007766 330 QAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNF 407 (590)
Q Consensus 330 ~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~ 407 (590)
. ...+++.+|++++|.+.+..++....-.........+.+++|.+..+ ...++..+.+.
T Consensus 211 -------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ 271 (402)
T TIGR00897 211 -------L------------GKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNI 271 (402)
T ss_pred -------H------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 0 00134688999999887776654433233334444555677776544 35677889999
Q ss_pred hccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh--c-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccc
Q 007766 408 LGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI--G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS 484 (590)
Q Consensus 408 ~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~--~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~ 484 (590)
+|++.+|+++||++|++.. + .+..+...+..+...+... . ....+++..++.|+++++... ..+.+.|. .+++
T Consensus 272 ig~~~~g~l~dr~~~~~~~-~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~ 347 (402)
T TIGR00897 272 VFNVIFGIVGDKLGWMNTV-R-WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKH 347 (402)
T ss_pred HHHHHHHHHHHhhcchhHH-H-HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-Ccch
Confidence 9999999999999876532 1 1111111121111111111 1 123456677888988887644 34566775 5789
Q ss_pred hhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 007766 485 FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM 564 (590)
Q Consensus 485 ~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~ 564 (590)
.|+.+|+.+++..+|+.+ +|.++|.++|..+ +...|.+.+++.+++.
T Consensus 348 ~g~~~g~~~~~~~lg~~~-gp~i~g~l~~~~g--------------------------------~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 348 KGAAMSVLNLSAGLSAFL-APAIAVLFIGFFG--------------------------------AIGVVWIFAALYVVSA 394 (402)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc--------------------------------hHHHHHHHHHHHHHHH
Confidence 999999999999999976 7999999999765 7788999998888887
Q ss_pred HHHHHh
Q 007766 565 VMSLIV 570 (590)
Q Consensus 565 vls~~l 570 (590)
++..++
T Consensus 395 ~~~~~~ 400 (402)
T TIGR00897 395 FLTAFI 400 (402)
T ss_pred HHHHHh
Confidence 777654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=178.06 Aligned_cols=360 Identities=14% Similarity=0.154 Sum_probs=220.1
Q ss_pred chHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHH
Q 007766 14 NRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNF 91 (590)
Q Consensus 14 ~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~ 91 (590)
.+|..++...+..+..+.. +..+...|.+++++|+|..|.+++.....++.. .+++.|.+.||+|+|.++.++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4455555555555555544 344555677889999999999998777777765 47899999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcC
Q 007766 92 VGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISA 170 (590)
Q Consensus 92 ~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~ 170 (590)
++..+..+. .+++.+.+.-++.|.|.+..+++......++||+ +||++.|+...+.+++..+...+...+
T Consensus 95 ~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l-- 165 (426)
T PRK12307 95 VGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF-- 165 (426)
T ss_pred HHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH--
Confidence 887654332 2356677777788888888888888888999985 599999999999999987765444322
Q ss_pred ChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Q 007766 171 NETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLI 250 (590)
Q Consensus 171 ~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (590)
.+ ..+.+..+ .+.. ...+
T Consensus 166 -------------------------------~~--~~~w~~~f-----------~i~~------------------~~~~ 183 (426)
T PRK12307 166 -------------------------------AE--AYGWRAAF-----------FVGL------------------LPVL 183 (426)
T ss_pred -------------------------------cc--cCCHHHHH-----------HHHH------------------HHHH
Confidence 00 00111011 0000 0000
Q ss_pred HHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 007766 251 IIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQ 330 (590)
Q Consensus 251 ~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (590)
+.++.. ...+| ++ +.. .+ + .++++. +
T Consensus 184 ~~~~~~----------~~~p~---~~--~~~--~~--------~------~~~~~~-~---------------------- 209 (426)
T PRK12307 184 LVIYIR----------ARAPE---SK--EWE--EA--------K------LSGKGK-H---------------------- 209 (426)
T ss_pred HHHHHH----------HHCCC---Ch--HHH--Hh--------h------hhcccc-c----------------------
Confidence 000000 00000 00 000 00 0 000000 0
Q ss_pred HhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHh---hhcccceeecchHHHHHHhcCCccc--chhHHHHhh
Q 007766 331 AAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVL---ASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIW 405 (590)
Q Consensus 331 ~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~---~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~ 405 (590)
.+ . ..+....+++++++++++|.+..++.+ ..+....+.+.+....++.|.+... ...++..++
T Consensus 210 ----~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 278 (426)
T PRK12307 210 ----SQ---S----AWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFG 278 (426)
T ss_pred ----cc---c----chhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 00 0 000011246789999999876544332 2222122334555566666765433 356788899
Q ss_pred hhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhh--hccchhhHHHHHHhhcc
Q 007766 406 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSY--GAHWAIVPAAASELFGL 482 (590)
Q Consensus 406 N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~-~~~~~~l~~~~~liG~~y--G~~~~l~P~i~ad~FG~ 482 (590)
+.+|++.+|+++||++|++.+ ....++..+..+.+. ........+...+.|+.+ .+..++.|.++.|.|+.
T Consensus 279 ~~~g~~~~g~l~dr~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 352 (426)
T PRK12307 279 TVLGNIVWGLCADRIGLKKTF------SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL 352 (426)
T ss_pred HHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH
Confidence 999999999999999886522 222223333322222 222222333444445433 34567899999999999
Q ss_pred cchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 483 KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 483 k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
++.|+..|+.+....+|+.+ +|.+.|.+.|..+
T Consensus 353 ~~~g~~~g~~~~~~~~~~~~-gp~~~g~l~~~~g 385 (426)
T PRK12307 353 EVRGLGTGLIYNLAATSGTF-NSMAATWLGITMG 385 (426)
T ss_pred HHHhhhhhHHHHHHhHHHHH-HHHHHHHHHHccc
Confidence 99999999999888888875 7999999988655
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=178.36 Aligned_cols=393 Identities=13% Similarity=0.099 Sum_probs=219.4
Q ss_pred ccccHHHHHHhCCC--------hhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007766 36 GSISPVIKAHMGYN--------QRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLP 106 (590)
Q Consensus 36 Svys~~Lk~~l~~s--------q~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~ 106 (590)
+..-+.++.+++++ +.|.+++.....++.. ..++.|.+.||+|+|.++.++.++..+|..+..+ ...
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~--~~~-- 123 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL--AAF-- 123 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHH--hcc--
Confidence 33345566667666 8889887666666664 5899999999999999999999998888655332 222
Q ss_pred CchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHH---HHh-cCChhhHHHHHHH
Q 007766 107 SLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIY---IMI-SANETSLIFLVAV 181 (590)
Q Consensus 107 s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~---~~~-~~~~~~fllfla~ 181 (590)
..++|.+.+..++.|.|.+..+........++|| ++||++.|+...+..++..+-..+. ... ........+.+..
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~ 203 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL 203 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 2234566677888888888888888888899997 5799999999888888876665444 110 0000000000000
Q ss_pred hhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccce
Q 007766 182 GPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPV 261 (590)
Q Consensus 182 ~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 261 (590)
.+.++.++... +.
T Consensus 204 ~~~~~~~~~~~-------------------------------------------------------------~l------ 216 (481)
T TIGR00879 204 IPAGLLFLGLF-------------------------------------------------------------FL------ 216 (481)
T ss_pred HHHHHHHHHHh-------------------------------------------------------------cC------
Confidence 00000000000 00
Q ss_pred ecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 007766 262 VLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKR 341 (590)
Q Consensus 262 ~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (590)
++.+ ..+..+. + .+ +.++.. ....+++.++ ++..+..+..+.. ...+. +
T Consensus 217 -----~~~~----~~~~~~~---~---~~-~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~----~- 265 (481)
T TIGR00879 217 -----PESP----RWLVGKG---R---VE-EARKSL-ARLRGTSGED------KELLDELELIDIK---RSIEK----R- 265 (481)
T ss_pred -----CCCh----HHHHHcC---C---hH-HHHHHH-HHHhCCCCCc------HHHHHHHHHHHHH---HHHHH----h-
Confidence 0000 0000000 0 00 000000 0000000000 0000000000000 00000 0
Q ss_pred cCCCCCCCCCCHHHhhh------cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccc
Q 007766 342 RKGPRRGEDFTLPQALM------KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGG 413 (590)
Q Consensus 342 ~~~p~~~~d~t~~~~l~------~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~ 413 (590)
.. ..++.+..+ .+.+|.+++.++........+..-...+.+..|.+... ...++..+.+.+|++++
T Consensus 266 ---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (481)
T TIGR00879 266 ---SV---QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVA 339 (481)
T ss_pred ---hc---cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 00 111222222 34455544444433332222333344455667776533 36677889999999999
Q ss_pred cchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH---h--cC------chhHHHHHHHHHhhhhccc-hhhHHHHHHhhc
Q 007766 414 GYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---I--GW------PGEIYVTTVLVGLSYGAHW-AIVPAAASELFG 481 (590)
Q Consensus 414 G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~---~--~~------~~~l~~~~~liG~~yG~~~-~l~P~i~ad~FG 481 (590)
|+++||++||+.. ....++++++.+++. . .. .........+.+..+|..+ .+...+++|.++
T Consensus 340 g~l~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 413 (481)
T TIGR00879 340 IFLVDRFGRRPLL------LIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP 413 (481)
T ss_pred HHHHHHhcchHHH------HHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCC
Confidence 9999999986532 233344444433322 1 11 1223334445555566544 445566699999
Q ss_pred ccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHH
Q 007766 482 LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCI 561 (590)
Q Consensus 482 ~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~ 561 (590)
.++.|+..|+......+|+.+ ++.++|.++|..+ ++..|.+.+++++
T Consensus 414 ~~~~~~~~~~~~~~~~lg~~i-~~~~~~~~~~~~~--------------------------------~~~~f~~~~~~~~ 460 (481)
T TIGR00879 414 LSLRPKGISIAVAANWLANFI-VGFLFPTMLESIG--------------------------------VGGVFIFFGGLNV 460 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC--------------------------------ccceehhHHHHHH
Confidence 999999999999999999987 5889999988644 7778999999998
Q ss_pred HHHHHHHHhhhhhh
Q 007766 562 IAMVMSLIVVHRTK 575 (590)
Q Consensus 562 ~a~vls~~l~~r~r 575 (590)
++.++.+++..++|
T Consensus 461 ~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 461 LGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHheecccCC
Confidence 88888876554444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=182.06 Aligned_cols=386 Identities=11% Similarity=0.046 Sum_probs=217.4
Q ss_pred cchHHHHHHHHHHHHh-cCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHH
Q 007766 13 NNRWLVFVCSMWIQSC-AGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQN 90 (590)
Q Consensus 13 ~~RW~~l~as~~i~l~-~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~ 90 (590)
+.||..+....+.-.+ .=.-+..+.-.|+|++++|+|.+|++++.....++.. ..++.|.+.||+|+|.++.++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 3456554444444333 2234566777889999999999999998777777764 4789999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhc
Q 007766 91 FVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMIS 169 (590)
Q Consensus 91 ~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~ 169 (590)
.++..+..+ . + +++.+++.-++.|.+.+..+.+......+|||. +||++.|+...+.+++..+-..+...+
T Consensus 84 ~~~~~~~~~--~---~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l- 155 (412)
T TIGR02332 84 GIASTATMF--A---T--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI- 155 (412)
T ss_pred HHHHHHHHH--h---c--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 888766433 1 2 356666777777888887777777788999985 699999999999998877665443322
Q ss_pred CChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Q 007766 170 ANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGL 249 (590)
Q Consensus 170 ~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~ 249 (590)
.+..... +..+.+..+.. .++. ..+.
T Consensus 156 ---------------------------~~~~~~~-~~~gwr~~f~~-----~~~~---------------------~l~~ 181 (412)
T TIGR02332 156 ---------------------------LALDGLM-ALKGWQWLFLL-----EGFP---------------------SVIL 181 (412)
T ss_pred ---------------------------HhCCCCC-CccchhHHHHH-----HHHH---------------------HHHH
Confidence 0000000 01111111100 0000 0000
Q ss_pred HHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 007766 250 IIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLF 329 (590)
Q Consensus 250 ~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (590)
.+++.. +.+++|++ ...+++. ++++... .....+.+.+ .|+
T Consensus 182 ~~~~~~---------~~~~~p~~--~~~l~~~-------~~~~~~~-~~~~~~~~~~-----~~~--------------- 222 (412)
T TIGR02332 182 GVMTWF---------WLDDSPDK--AKWLDEE-------DKKALKE-MIDNDQLTLE-----QPE--------------- 222 (412)
T ss_pred HHHHhh---------ccCCCccc--CCCCCHH-------HHHHHHH-HHHhcccccc-----ccc---------------
Confidence 000000 11111110 0000000 0000000 0000000000 000
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhc--CCcc--cchhHHHHhh
Q 007766 330 QAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLG--YADT--SIYVSMISIW 405 (590)
Q Consensus 330 ~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g--~~~~--~~~Vsl~si~ 405 (590)
++. +++ +.+ ....+++ ++++.+|+..+++++....=-.+...+.++.++.+ .+.. ....++..++
T Consensus 223 -----~~~--~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~ 291 (412)
T TIGR02332 223 -----GAF--AHA--AMP-QRSMLRE-IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFC 291 (412)
T ss_pred -----ccc--ccc--ccc-HHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHH
Confidence 000 000 000 0011233 45789999988887765543345567777777753 3332 2356788999
Q ss_pred hhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhH-HHHHHHHHhhhhccchhhHHHHHHhhcccc
Q 007766 406 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEI-YVTTVLVGLSYGAHWAIVPAAASELFGLKS 484 (590)
Q Consensus 406 N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l-~~~~~liG~~yG~~~~l~P~i~ad~FG~k~ 484 (590)
+.+||+.+|+++||++|++. .+.....+..++.++......... +.+..+.+++......+......|.|++|+
T Consensus 292 ~~~g~l~~g~l~dr~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 366 (412)
T TIGR02332 292 TIFGMIWWSRHSDRLKERKH-----HTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA 366 (412)
T ss_pred HHHHHHHHHHHhcccCccHH-----HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH
Confidence 99999999999999986432 112222333333222222211222 222223233332233444556678999999
Q ss_pred hhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 485 FGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 485 ~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
.|+.+|+.+....+|+.+ +|.+.|.+.|..+
T Consensus 367 ~~~a~g~~~~~~~~g~~~-~p~~~g~i~~~~g 397 (412)
T TIGR02332 367 RAIAIAVINATGNIGSAL-SPFLIGILKDATG 397 (412)
T ss_pred HHHHHHHHHHhhhhhhhh-hhhhcccccccCC
Confidence 999999999999999876 7889999998765
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=175.81 Aligned_cols=378 Identities=15% Similarity=0.118 Sum_probs=222.7
Q ss_pred hcccchHHHHHHHHHHHHhcCc-ccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAGI-GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGV 87 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~Gt-~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~ 87 (590)
...+++|..++.+.+..++.|. .+.++.+.|.+.+.+|++..+.+++.....++.. ..++.|.+.||+|+|.++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 3445677777777777776654 4678889999999999999999997666666665 4789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHH
Q 007766 88 LQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYI 166 (590)
Q Consensus 88 ~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~ 166 (590)
++..+++.+..+. .+++.+.+..++.|.+.+..+.+......+++|+ +||.+.|+......+++.+-..+..
T Consensus 90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 90 LLFSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 9888887664431 2356666677788888888888888889999985 6999999998888888766654443
Q ss_pred HhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHH
Q 007766 167 MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLA 246 (590)
Q Consensus 167 ~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 246 (590)
.+.+ ..+.+..+.. .++. .
T Consensus 163 ~l~~-----------------------------------~~g~~~~~~~-----~~~~---------------------~ 181 (398)
T TIGR00895 163 WLIP-----------------------------------VFGWRSLFYV-----GGIA---------------------P 181 (398)
T ss_pred HHhh-----------------------------------cccceeehhh-----hhhH---------------------H
Confidence 2200 0000000000 0000 0
Q ss_pred HHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHH
Q 007766 247 VGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQA 326 (590)
Q Consensus 247 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (590)
.+..+++.. +.+++++ .. .+. +++. .+++.++......++.++ + .+++
T Consensus 182 ~~~~~~~~~---------~~~~~~~---~~--~~~-~~~~--~~~~~~~~~~~~~~~~~~-~---~~~~----------- 229 (398)
T TIGR00895 182 LLLLLLLMR---------FLPESID---FL--VSK-RPET--VRRIVNAIAPQMQAEAQS-A---LPEQ----------- 229 (398)
T ss_pred HHHHHHHHH---------hCCCCCh---HH--Hhc-CHHH--HHHHHHHHHHhccccccc-c---cccc-----------
Confidence 000000000 0000000 00 000 0000 000000000000000000 0 0000
Q ss_pred HHHHHhhhhhhhhcccCCCCCCCCCCHHH-h---hhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhH
Q 007766 327 KLFQAAAEGAVRVKRRKGPRRGEDFTLPQ-A---LMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVS 400 (590)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~~d~t~~~-~---l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vs 400 (590)
++ +. .......+ . .+.+.+|.+++.+++.......+.+.+..+.+..|.+... ...+
T Consensus 230 -------------~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 292 (398)
T TIGR00895 230 -------------KA---TQ-GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGA 292 (398)
T ss_pred -------------cc---cc-chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00 00 00001111 1 1234455555555443332222222233445566766543 4678
Q ss_pred HHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhccchhhHHHHHHh
Q 007766 401 MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479 (590)
Q Consensus 401 l~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~-~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~ 479 (590)
+.++...+|++++|+++||++|+. . +....+..+...++.. ......+++..++.|+++|+......+.++|.
T Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 366 (398)
T TIGR00895 293 LFNFGGVIGSIIFGWLADRLGPRV-T-----ALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALF 366 (398)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHH-H-----HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999999998751 1 1222222222222222 23345677888999999999999999999999
Q ss_pred hcccchhhhhhHHHhhhhhHHHHhhHhHHHHH
Q 007766 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGI 511 (590)
Q Consensus 480 FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~i 511 (590)
+..++-|+.+|+......+|..+ +|.+.|.+
T Consensus 367 ~~~~~~g~~~g~~~~~~~~g~~~-g~~~~G~l 397 (398)
T TIGR00895 367 YPTAIRATGVGWAIGIGRLGAII-GPILAGYL 397 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHhHHhc
Confidence 99999999999999888899876 78888864
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=170.89 Aligned_cols=348 Identities=16% Similarity=0.091 Sum_probs=210.3
Q ss_pred ccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCC---Cch
Q 007766 34 LFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLP---SLP 109 (590)
Q Consensus 34 ~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~---s~~ 109 (590)
..++....+++++|+|.+|+.++..+..++.. ..++.|.+.||+|+|.++.+|.+...++.....+ ....+ ..+
T Consensus 34 ~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 111 (392)
T PRK12382 34 PLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLL--AAILPVSAPFK 111 (392)
T ss_pred HhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHh--hhccccchhHH
Confidence 34445556889999999999997666666654 5899999999999999999998876655322111 11111 234
Q ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHH
Q 007766 110 LWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVM 188 (590)
Q Consensus 110 ~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l 188 (590)
++.+.+.-++.|.|.+...++......+++| ++||++.|+.-....++..+-..+...+
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l-------------------- 171 (392)
T PRK12382 112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL-------------------- 171 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6666667778888888777777777788996 6799999987655555544433332211
Q ss_pred hhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccC
Q 007766 189 AFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTE 268 (590)
Q Consensus 189 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 268 (590)
.. ..+ +... +.+.. . ..++.++..+ +.
T Consensus 172 -~~--------------~~g--~~~~---------~~~~~---------------~--~~~~~~~~~~----------~~ 198 (392)
T PRK12382 172 -HS--------------HFG--FAAL---------ALTTM---------------V--LPLLAWAFNG----------TV 198 (392)
T ss_pred -Hh--------------ccC--hHHH---------HHHHH---------------H--HHHHHHHHHH----------hc
Confidence 00 000 0000 00000 0 0000000000 00
Q ss_pred CCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC
Q 007766 269 PPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRG 348 (590)
Q Consensus 269 ~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 348 (590)
+ | ++ ++ ++.+ +
T Consensus 199 ~-~---~~--~~---------------------~~~~---------------------------------------~--- 209 (392)
T PRK12382 199 R-K---VP--AH---------------------AGER---------------------------------------P--- 209 (392)
T ss_pred c-C---CC--CC---------------------cccC---------------------------------------c---
Confidence 0 0 00 00 0000 0
Q ss_pred CCCCHHHhhhcHHHHHHHHHHHhhhcccceeec-chHHHHHHhcCCcccchhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 349 EDFTLPQALMKADFLLLFFSLVLASGSGLTVID-NLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 349 ~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~-n~~~I~~s~g~~~~~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
+.++.+| .+|...+..++ .+.+...+. ......++.+.+.....++..++.+..|++.+|.++||++|++..
T Consensus 210 ---~~~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~- 282 (392)
T PRK12382 210 ---SLWSVVG--LIWKPGLGLAL-QGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA- 282 (392)
T ss_pred ---hHHHHHH--HHHHhHHHHHH-HHHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh-
Confidence 0011111 12221111111 011111111 122334445554444566678888999999999999999986643
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHh
Q 007766 428 RPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 506 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~ 506 (590)
.....++.++.+++... ....+++..++.|+++|..+...++.+.|.+..|+.|+.+|+..+...+|..+ +|.
T Consensus 283 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~ 356 (392)
T PRK12382 283 -----IVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV-SGP 356 (392)
T ss_pred -----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 23334444444333322 23456677888999999988888899999999999999999999999999876 688
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 507 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 507 l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
+.|.+.|..+ |+..|.+.+.+.++++++.+..
T Consensus 357 ~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 357 LAGMLATSFG--------------------------------YPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHhC--------------------------------chHHHHHHHHHHHHHHHHHHhh
Confidence 9999999755 8999999998888887776543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=178.84 Aligned_cols=379 Identities=12% Similarity=0.146 Sum_probs=225.6
Q ss_pred HhcCcccccccccHHHHH-HhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007766 27 SCAGIGYLFGSISPVIKA-HMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNR 104 (590)
Q Consensus 27 l~~Gt~Y~fSvys~~Lk~-~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~ 104 (590)
++--.-+.||.-.+++++ .+|+|.+|+.++ ++..-.++..-++.|.+.||+|+|.+..++.++..++..++.++....
T Consensus 45 ~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~ 124 (462)
T PRK15034 45 LAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP 124 (462)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333345667777778776 799999999996 545555555558999999999999999999999888876544433322
Q ss_pred CCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhh
Q 007766 105 LPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGP 183 (590)
Q Consensus 105 i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~ 183 (590)
. .+++++++..++.|.+ +..+.++++...+|||+ +||++.|+..+.-.+++.+...+. |
T Consensus 125 ~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~-----------------p 184 (462)
T PRK15034 125 N--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA-----------------P 184 (462)
T ss_pred C--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH-----------------H
Confidence 2 3578777777777776 55778899999999995 599999999755455555443322 2
Q ss_pred HHHH--HhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccce
Q 007766 184 SIVV--MAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPV 261 (590)
Q Consensus 184 ~~v~--l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 261 (590)
.++. +...+--...+. +.+......+ +..+|.... + ++.++..
T Consensus 185 ~~i~~~l~~~~G~~~~~~------~~g~~~~~~~----~~~~~~~~~------------------i-v~~i~~~------ 229 (462)
T PRK15034 185 LVIFVPVFAFLGVNGVPQ------ADGSVMSLAN----AAWIWVPLL------------------A-IATIAAW------ 229 (462)
T ss_pred HHHHHHHHHHhccccccc------cccchHHHHH----HHHHHHHHH------------------H-HHHHHHH------
Confidence 2111 111110000000 0000000000 000111100 0 0000111
Q ss_pred ecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 007766 262 VLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKR 341 (590)
Q Consensus 262 ~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (590)
+.. +++ + +.+. + .
T Consensus 230 ---~~~------~~~--~-----------------------~~~~-----------------------------~--~-- 242 (462)
T PRK15034 230 ---SGM------NDI--A-----------------------SSRA-----------------------------S--I-- 242 (462)
T ss_pred ---HhC------CCc--c-----------------------cccc-----------------------------C--H--
Confidence 000 000 0 0000 0 0
Q ss_pred cCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcccc--hhHHHHhhhhhccccccchhhh
Q 007766 342 RKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA 419 (590)
Q Consensus 342 ~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~~--~Vsl~si~N~~GRl~~G~lSD~ 419 (590)
...++.+|+|+-|++-+.+++.-|.=..+.+-+....++ .++.... ...+..+...++|.++|+++||
T Consensus 243 ---------~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADR 312 (462)
T PRK15034 243 ---------ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDK 312 (462)
T ss_pred ---------HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 012468999999999888777555322222233333333 2222221 3445678899999999999999
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHH--HHHhcC----ch-----hHHHHHHHHHhhhhccchhhHHHHHH----------
Q 007766 420 IVRKFAYPRPVAMAVAQVVMAFALL--YYAIGW----PG-----EIYVTTVLVGLSYGAHWAIVPAAASE---------- 478 (590)
Q Consensus 420 l~r~~~~~R~~~l~~~~~l~~~~~l--~~~~~~----~~-----~l~~~~~liG~~yG~~~~l~P~i~ad---------- 478 (590)
+++++.. ....+++++..+ ...... +. .+....+..|++.|+.|-+.|.+-.+
T Consensus 313 iG~~~vl------~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~ 386 (462)
T PRK15034 313 FGGVRVT------LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKG 386 (462)
T ss_pred cCchHHH------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccc
Confidence 9986532 222222222211 111111 11 22223344477888888777776642
Q ss_pred -------hhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHH
Q 007766 479 -------LFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSI 551 (590)
Q Consensus 479 -------~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~ 551 (590)
.-..|+-|.-=|++....++|++++ |.+.|..+|.++ .|..
T Consensus 387 ~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~-p~~~g~~~~~~g-------------------------------~~~~ 434 (462)
T PRK15034 387 GSDEQAQREAVTETAAALGFISAIGAVGGFFI-PQAFGMSLNMTG-------------------------------SPVG 434 (462)
T ss_pred cchhHHhhHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHHHHcC-------------------------------CcHH
Confidence 1112378888999999999999986 889999999876 3899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 007766 552 TCGIMAGLCIIAMVMSLIVVHRTK 575 (590)
Q Consensus 552 ~F~i~~~~~~~a~vls~~l~~r~r 575 (590)
.|.+..+..+++++++++.+.|+.
T Consensus 435 ~~~~~~~~~~~~~~~~w~~y~r~~ 458 (462)
T PRK15034 435 AMKVFLIFYIVCVLLTWLVYGRRK 458 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999998776654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=170.86 Aligned_cols=330 Identities=12% Similarity=0.060 Sum_probs=209.5
Q ss_pred cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 33 YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 33 Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
..++..-|++++++|+|.++..++.....++.. .+++.|++.||+|+|.++.+|.++..++.... ..+ +.+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~~--~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SAP--GTA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hhc--cHH
Confidence 467788899999999999999998777777765 58999999999999999999998877776442 112 345
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhhh
Q 007766 112 VLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAFM 191 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~~ 191 (590)
.+.+..++.|.|.+...++......++||++||++.|+.....+++..+-..+...+ .
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l-----------------~----- 146 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPL-----------------A----- 146 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------H-----
Confidence 555566677777776666666667789999999999999888888876655443222 0
Q ss_pred eeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCC
Q 007766 192 FIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPP 271 (590)
Q Consensus 192 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 271 (590)
+ .....+.. .|.... . ......++.. | . .
T Consensus 147 -----------~--~~~~~w~~---------~f~~~~---------------~-~~~~~~~~~~----~------~-~-- 175 (355)
T TIGR00896 147 -----------Q--HSGGHWQQ---------ALAWWA---------------L-PALLALLAWI----P------Q-V-- 175 (355)
T ss_pred -----------H--hhhhhHHH---------HHHHHH---------------H-HHHHHHHHHh----h------h-h--
Confidence 0 00000000 000000 0 0000000000 0 0 0
Q ss_pred CCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 007766 272 PVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDF 351 (590)
Q Consensus 272 ~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~ 351 (590)
++++ + .++ + + .+.
T Consensus 176 -~~~~---~----------------------~~~----------------------------------~----~---~~~ 188 (355)
T TIGR00896 176 -RRRV---A----------------------ANQ----------------------------------T----T---TRL 188 (355)
T ss_pred -cccc---C----------------------CCC----------------------------------C----C---CCC
Confidence 0000 0 000 0 0 011
Q ss_pred CHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 352 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 352 t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
++++++|++++|.+.+.+.+....-..+.+.+..+.++.|.+... ...+++.+...+||+.+|+++||+++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~---- 264 (355)
T TIGR00896 189 TPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRG---- 264 (355)
T ss_pred CCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH----
Confidence 235688999999887766654444334445566667777776543 47888999999999999999999954331
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcc-cchhhhhhHHHhhhhhHHHHhhHhHH
Q 007766 430 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSLIFSGVIA 508 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~-k~~g~nyG~~~~a~~~g~~i~~~~l~ 508 (590)
.+....++++++.+.+.........+..++.|+++|..+.+..+.+.+.+.. ++.|+.+|++.....++..+ +|.+.
T Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-gp~~~ 342 (355)
T TIGR00896 265 -IVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL-GPLFV 342 (355)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 1233334444443333322222223356788999999999888888877765 55688889887666677665 78899
Q ss_pred HHHHhhhh
Q 007766 509 SGIYDYYA 516 (590)
Q Consensus 509 g~iyd~~~ 516 (590)
|.++|+++
T Consensus 343 G~l~~~~g 350 (355)
T TIGR00896 343 GVLHDISG 350 (355)
T ss_pred HHHHHHhc
Confidence 99999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-17 Score=177.39 Aligned_cols=377 Identities=13% Similarity=0.089 Sum_probs=226.5
Q ss_pred HhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcC
Q 007766 45 HMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNG 123 (590)
Q Consensus 45 ~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g 123 (590)
++|++.++...+..+..++.. ..+++|.+.||+|+|.++.++.++..++..+...... ..++.+.+..++.|.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHh
Confidence 688999999987666666665 4799999999999999999999988777655433222 1244566677788889
Q ss_pred ccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCcc
Q 007766 124 ETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQ 202 (590)
Q Consensus 124 ~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~ 202 (590)
.+..+.++.....+||| ++||++.|+..++..++..+-..+...+ .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l---------------------------------~ 191 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL---------------------------------C 191 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------H
Confidence 99999999999999998 5799999999999999887776555433 0
Q ss_pred ccCC-CCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCCCCcccccccc
Q 007766 203 VRLS-DNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAET 281 (590)
Q Consensus 203 ~~~~-~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~ 281 (590)
+ . .+.+..+.. .++. .++..++... +.+ ++| +.
T Consensus 192 ~--~~~gw~~~f~i-----~~~~---------------------~~~~~~~~~~---------~~~------~~p---~~ 225 (465)
T TIGR00894 192 E--SWGGWPMIFYV-----FGIV---------------------GCAWSLLWFV---------FPA------DDP---SI 225 (465)
T ss_pred h--ccCCCCeehhh-----hhHH---------------------HHHHHHHHHH---------Hhc------CCc---cc
Confidence 0 0 011111100 0000 0000000000 000 111 00
Q ss_pred ccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHH
Q 007766 282 NKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKAD 361 (590)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~ 361 (590)
.+ ..+++|. +.+++ . .++ +++ +. .....+++++++++
T Consensus 226 --~~-~~~~~~~-------------------------~~i~~---~-----~~~----~~~--~~-~~~~~~~~~~~~~~ 262 (465)
T TIGR00894 226 --HP-CISKFEK-------------------------KYINS---S-----LQG----QKG--ST-RQSLPIKAIPKSLP 262 (465)
T ss_pred --CC-CCCHHHH-------------------------HHHHh---h-----ccc----ccC--CC-CCCCCHHHHhcCHH
Confidence 00 0000000 00000 0 000 000 11 11235789999999
Q ss_pred HHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHH----HH
Q 007766 362 FLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM----AV 434 (590)
Q Consensus 362 Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l----~~ 434 (590)
+|.+++..++....-..+...+..+.+ .+|.+... ...++..+...+++++.|+++||+.+++...|.... .+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 342 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999998877766554444555555554 45665543 356788899999999999999999876655443321 11
Q ss_pred HHHHHHHHHHHHHh-cC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 435 AQVVMAFALLYYAI-GW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 435 ~~~l~~~~~l~~~~-~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
...+..+..+.... .. .....+...+.+...+......-....|.. .++.|+-.|+..+...+|+++ .|.+.|.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~l~~~i-~p~l~g~~~ 420 (465)
T TIGR00894 343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLA-PRFLGFIKGITGLPGFIGGLI-ASTLAGNIL 420 (465)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcC-hhHHHHHHHHHHHHHHHHHHH-HHHhhheee
Confidence 11111111111111 11 222333344444455544444444445665 569999999999999999987 688999887
Q ss_pred hhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007766 513 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYA 579 (590)
Q Consensus 513 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r~~~~ 579 (590)
|.+.. + -|+..|.+.+++++++.++.......++..++
T Consensus 421 ~~~~~--~---------------------------~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~ 458 (465)
T TIGR00894 421 SQDSK--N---------------------------VWLIVFLIMAFVNILCVIFYLIFGSAERQDWA 458 (465)
T ss_pred CCCCc--h---------------------------HHHHHHHHHHHHHHHHHHHeeeeecceecCCC
Confidence 75421 0 29999999999999998887765544444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=180.11 Aligned_cols=382 Identities=15% Similarity=0.138 Sum_probs=228.4
Q ss_pred CcccccccccHHHHHHhCCC---hhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007766 30 GIGYLFGSISPVIKAHMGYN---QRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRL 105 (590)
Q Consensus 30 Gt~Y~fSvys~~Lk~~l~~s---q~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i 105 (590)
|-.|.++.+.+++++++|++ ..+..++.....+|..+ .++.|.+.||+|+|.+++++.++..++..+.. ..
T Consensus 103 ~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-----~~ 177 (505)
T TIGR00898 103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-----FS 177 (505)
T ss_pred CcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-----Hc
Confidence 45577778999999999999 88888887777788765 68999999999999999999988877765432 22
Q ss_pred CCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhH
Q 007766 106 PSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPS 184 (590)
Q Consensus 106 ~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~ 184 (590)
++++.+.++-++.|.+.+..+........+++|. +||.+.++...+++++..+...+...+.+ ...++++...+.
T Consensus 178 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--wr~~~~~~~i~~ 253 (505)
T TIGR00898 178 --PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD--WRWLQLAVSLPT 253 (505)
T ss_pred --ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHH
Confidence 2467777778888999998888899999999975 59999999877777776554433322110 111111111111
Q ss_pred HHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecc
Q 007766 185 IVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLV 264 (590)
Q Consensus 185 ~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 264 (590)
++.++...+ . |
T Consensus 254 ~~~~~~~~~-------------------------------------------------------------~----~---- 264 (505)
T TIGR00898 254 FLFFLLSWF-------------------------------------------------------------V----P---- 264 (505)
T ss_pred HHHHHHHHh-------------------------------------------------------------c----C----
Confidence 111111100 0 0
Q ss_pred cccCCCCCCccc--cccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 007766 265 FFTEPPPPVEET--LLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRR 342 (590)
Q Consensus 265 ~~~~~~~~~~~p--ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (590)
|+| +..+. +.+ +.........+..+.. .+++ .. +.++ +.+. +
T Consensus 265 ---------esp~~l~~~~------~~~-~a~~~l~~~~~~~~~~----~~~~-~~-~~~~----------~~~~--~-- 308 (505)
T TIGR00898 265 ---------ESPRWLISQG------RIE-EALKILQRIAKINGKK----LPAE-VL-SLSL----------EKDL--S-- 308 (505)
T ss_pred ---------CChHHHHHCC------CHH-HHHHHHHHHHHHcCCC----CCHH-HH-hhhh----------hhhh--h--
Confidence 011 00000 000 0000000000000000 0000 00 0000 0000 0
Q ss_pred CCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcccchhHHHHhhhhhccccccchhhhhhh
Q 007766 343 KGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVR 422 (590)
Q Consensus 343 ~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~~~Vsl~si~N~~GRl~~G~lSD~l~r 422 (590)
++ ....+.+++++++++|...+...+......+....+....+.++.+ ......+.++....|+++.++++||++|
T Consensus 309 --~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~gr 384 (505)
T TIGR00898 309 --SS-KKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGR 384 (505)
T ss_pred --hc-cCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00 1135788999999999887776554432211111111111122222 1123446677888999999999999998
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHhc-Cc--hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhH
Q 007766 423 KFAYPRPVAMAVAQVVMAFALLYYAIG-WP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG 499 (590)
Q Consensus 423 ~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~--~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g 499 (590)
|+. +.+...+..++++++... .. ........+.+++.++.+.+...+++|.|.+++-++-.|+......+|
T Consensus 385 r~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig 458 (505)
T TIGR00898 385 RYT------MAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVG 458 (505)
T ss_pred HHH------HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHH
Confidence 653 234444444444433322 22 334555667778888899999999999999999999999999999999
Q ss_pred HHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 500 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 500 ~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
+.+ +|.+.+ .+... +..+|.+.+++++++.++.+++
T Consensus 459 ~~i-~p~i~~--~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 459 SII-SPFLVY--LGEKW--------------------------------LFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHH-HhHHHH--HHHHH--------------------------------HhhHHHHHHHHHHHHHHHHHcC
Confidence 876 787777 33222 4557888888887877776654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=160.22 Aligned_cols=330 Identities=20% Similarity=0.289 Sum_probs=234.5
Q ss_pred cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 007766 31 IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLP 109 (590)
Q Consensus 31 t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~ 109 (590)
..+.++.+.+.+.+++|.++++.+.+.....++.. ..++.|.+.||+|+|..+.++.++..+++.+..+. .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 86 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SS 86 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------cc
Confidence 45667788888999999999999998777777775 47999999999999999999999999998775543 23
Q ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHHhhHHHH
Q 007766 110 LWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPSIVV 187 (590)
Q Consensus 110 ~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~~~~~v~ 187 (590)
++.+.+..++.|.+.+..+.+......+++|+ +|+++.|+......++..+-..+...+ +.......+.+......+.
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56666778888888888888888999999986 799999999999888887766555443 1111111111111111110
Q ss_pred HhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceeccccc
Q 007766 188 MAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFT 267 (590)
Q Consensus 188 l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 267 (590)
.+...++
T Consensus 167 ~~~~~~~------------------------------------------------------------------------- 173 (352)
T cd06174 167 ALLLLFL------------------------------------------------------------------------- 173 (352)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred CCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 007766 268 EPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRR 347 (590)
Q Consensus 268 ~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 347 (590)
+
T Consensus 174 -----------------------------------------------------------------------------~-- 174 (352)
T cd06174 174 -----------------------------------------------------------------------------L-- 174 (352)
T ss_pred -----------------------------------------------------------------------------H--
Confidence 0
Q ss_pred CCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHh-cCCccc--chhHHHHhhhhhccccccchhhhhhhcc
Q 007766 348 GEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKF 424 (590)
Q Consensus 348 ~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~-g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~ 424 (590)
+++|.+.+..++....-..+.....++.++. +.++.. ...++..+.+..|++.+|.++||++||+
T Consensus 175 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 175 ------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred ------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444333333333333344333 333322 3566788889999999999999998865
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHh
Q 007766 425 AYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 503 (590)
Q Consensus 425 ~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~ 503 (590)
. .+.....+..+++++..... ...+++...+.|++.+..+...++.+.|.+..|+.|+.+|+......+|..+
T Consensus 243 ~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 316 (352)
T cd06174 243 L-----LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL- 316 (352)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-
Confidence 2 22445555555554444333 4568889999999999999999999999999999999999999999999987
Q ss_pred hHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 504 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 504 ~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
++.+.|.++|..+ |+..|.+.+.+++++.++..+
T Consensus 317 ~~~i~g~l~~~~~--------------------------------~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 317 GPLLAGLLLDTGG--------------------------------YGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHhcccC--------------------------------cchHHHHHHHHHHHHHHHhee
Confidence 6889999998433 889999999998888776653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=166.31 Aligned_cols=358 Identities=17% Similarity=0.230 Sum_probs=238.6
Q ss_pred cccccccHHHHHHhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 33 YLFGSISPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 33 Y~fSvys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
+.||.-.+++++.+|+|..|..++ ++-.-.|..+=++-|++.||+|||.+..++.++..+=-.. +.+.... +++|
T Consensus 31 ~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~--~~~a~~~--~~~~ 106 (417)
T COG2223 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG--LAFAVTY--PSTW 106 (417)
T ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH--HHHHccC--CchH
Confidence 567777889999999999999996 8888888888899999999999999999999987666433 3333333 3468
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhh
Q 007766 112 VLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAF 190 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~ 190 (590)
++.+..++.|.+.+.+ ...+...-+|||+ ++|+|.||-- .|=.|.-.+++. .|.++...+
T Consensus 107 ~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g--~GN~G~av~q~~----------------~P~v~~~~g 167 (417)
T COG2223 107 QLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG--AGNLGVAVAQLV----------------APLVAVAFG 167 (417)
T ss_pred HHHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc--cccccHHHHHHH----------------HHHHHHHHh
Confidence 8888888888776655 7789999999985 6899999986 343333333222 133221111
Q ss_pred heeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCC
Q 007766 191 MFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPP 270 (590)
Q Consensus 191 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 270 (590)
.- ... .+..+|.....+. . +++.. +.+
T Consensus 168 ~~----------------~w~-------~~~~i~~~~l~v~-----------------~--v~~~~--------~~~--- 194 (417)
T COG2223 168 FL----------------AWR-------NVAGIYVVALAIA-----------------A--VLAWL--------GMN--- 194 (417)
T ss_pred hH----------------HHH-------HHHHHHHHHHHHH-----------------H--HHHHH--------HhC---
Confidence 10 000 0111221111000 0 00000 000
Q ss_pred CCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 007766 271 PPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGED 350 (590)
Q Consensus 271 ~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d 350 (590)
+.| +. +++ .+ +. ..
T Consensus 195 ---d~p---~~-----------------------r~~--------------------------------~~---~~--~~ 208 (417)
T COG2223 195 ---DVP---EH-----------------------RAS--------------------------------VK---PQ--LP 208 (417)
T ss_pred ---CCh---hh-----------------------hcc--------------------------------cc---cc--ch
Confidence 011 00 000 00 00 00
Q ss_pred CCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 351 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 351 ~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
...+.+.+++|-|.+.+.|+..-|+=..+.+-+.+..++ .|.+..+ ...++..+.+.+-|..+|++|||++.++..
T Consensus 209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~- 287 (417)
T COG2223 209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT- 287 (417)
T ss_pred hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH-
Confidence 223457779999999998887777666677777777765 4666554 588899999999999999999999886632
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-------Cc-h----hHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhh
Q 007766 428 RPVAMAVAQVVMAFALLYYAIG-------WP-G----EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA 495 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~~~-------~~-~----~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a 495 (590)
.+.+..++++..++... .+ . .+.......|+.-|+.|-..|.+=.+ +.|.-=|++...
T Consensus 288 -----~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-----~~G~v~G~vga~ 357 (417)
T COG2223 288 -----LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-----ETGAVTGIVGAI 357 (417)
T ss_pred -----HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-----hhhHHHHHHHHh
Confidence 34444444443333221 11 1 23444555667777777777766544 889999999999
Q ss_pred hhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007766 496 SPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK 575 (590)
Q Consensus 496 ~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r 575 (590)
.++|++.+ |...|..||.++ .|+..|.+....+++++++...++.|+|
T Consensus 358 G~lGGf~l-p~~~g~~~~~tg-------------------------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 358 GGLGGFFL-PLAFGVSLDLTG-------------------------------SYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred ccccccch-hHHHHHHHHhcc-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999875 999999999888 3899999999999999999998888875
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-16 Score=164.10 Aligned_cols=357 Identities=12% Similarity=0.121 Sum_probs=217.3
Q ss_pred chHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHH
Q 007766 14 NRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFV 92 (590)
Q Consensus 14 ~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~ 92 (590)
+=|+.+.+..+..+..+. ...+-|++++++|+|.+|..++..+..++.. ..++.|.+.||+|+|.++.+|.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~---~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAV---LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHhhhh---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544443 3455788888999999999998777777765 478999999999999999999999888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhC-CCCCCchhhhhHhhhhhhHHHHHHHHHHhcCC
Q 007766 93 GYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNF-PKSRGPVVGILKGFAGLSGAILTQIYIMISAN 171 (590)
Q Consensus 93 GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knF-P~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~ 171 (590)
++.+... . .++|.+.+..++.|.+.+...........+.+ |++||.+.|+......++..+-..+...+.
T Consensus 84 ~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-- 154 (381)
T PRK03633 84 GCAGLGL-----M--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS-- 154 (381)
T ss_pred HHHHHHH-----h--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 8755322 2 23566666677778777766554444445566 468999999988888888766554443220
Q ss_pred hhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Q 007766 172 ETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLII 251 (590)
Q Consensus 172 ~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (590)
+ .......+. .+ + .....+.
T Consensus 155 -------------------------------~--~~~~~~~~~------~~-~--------------------~~~~~~~ 174 (381)
T PRK03633 155 -------------------------------T--ELMSVLPWV------TG-L--------------------VLAAILP 174 (381)
T ss_pred -------------------------------c--cccchHHHH------HH-H--------------------HHHHHHH
Confidence 0 000000000 00 0 0000000
Q ss_pred HHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 007766 252 IILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQA 331 (590)
Q Consensus 252 ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (590)
+++. +.+ + ++ + ++
T Consensus 175 ~~~~-----------~~~------~--~~----------------------~-~~------------------------- 187 (381)
T PRK03633 175 LLFT-----------RIL------N--QQ----------------------A-EN------------------------- 187 (381)
T ss_pred HHHh-----------ccc------C--CC----------------------C-CC-------------------------
Confidence 0000 000 0 00 0 00
Q ss_pred hhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhh-hcccceeecchHHHHHHhcCCccc--chhHHHHhhhhh
Q 007766 332 AAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLA-SGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFL 408 (590)
Q Consensus 332 ~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~-~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~ 408 (590)
+ + ..+.++.+|++.||+.....++. ...+..+ +-+....++.|.+... ..+++..+.+..
T Consensus 188 --------~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~ 250 (381)
T PRK03633 188 --------H----D----STSIWPMLKLRQARLGVNGCIISGIVLGSLY-GLMPLYLNHQGMSDASIGFWMALLVSAGIL 250 (381)
T ss_pred --------C----C----CCCHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0 01234577888888654332221 1111111 1233445566665443 478889999999
Q ss_pred ccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhh
Q 007766 409 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL 488 (590)
Q Consensus 409 GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~n 488 (590)
||+..|+++||++|++. +.....++.++.+.+. .....+.+..+.|++.+..+...-+.+.|....++.+.-
T Consensus 251 ~~~~~g~l~dr~~~~~~------l~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~ 322 (381)
T PRK03633 251 GQWPIGRLADRFGRLLV------LRVQVFVVILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAM 322 (381)
T ss_pred HHhhhHHHHHHcCcHHH------HHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999987542 2333334344333222 122344456667777766666666667888877787877
Q ss_pred hhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 007766 489 YNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS 567 (590)
Q Consensus 489 yG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls 567 (590)
++...+++.+|+.+ +|.++|.++|..+ ++..|.+.+.+.+++.++-
T Consensus 323 ~~~~~~~~~lG~~i-gp~~~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 323 NQALLLSYTVGSLL-GPSFTAMLMQNYS--------------------------------DNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhC--------------------------------ccHHHHHHHHHHHHHHHHH
Confidence 88888889999886 7999999999655 7788888777766554333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=165.73 Aligned_cols=138 Identities=15% Similarity=0.176 Sum_probs=104.8
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAA 476 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ 476 (590)
..++.++.+.++++.+|+++||++|++.+ .....+..++.+.+.. ..+..+++..++.|++.|..+....+.+
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKIL------ITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 34556788889999999999999886532 2333333333333322 2344566777889999999999999999
Q ss_pred HHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHH
Q 007766 477 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM 556 (590)
Q Consensus 477 ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~ 556 (590)
.|....++.|+.+|+......+|..+ +|.++|.+.|..+ |+.+|.+.
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~-gp~~~G~l~~~~g--------------------------------~~~~f~~~ 383 (408)
T PRK09874 337 VYNSSNQIAGRIFSYNQSFRDIGNVT-GPLMGAAISANYG--------------------------------FRAVFLVT 383 (408)
T ss_pred HHhCCcccceeeehHHHHHHHHHHHh-hHHHHHHHHhhcc--------------------------------hhHHHHHH
Confidence 99999999999999998888888876 7889999987654 89999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 007766 557 AGLCIIAMVMSLIVVHRT 574 (590)
Q Consensus 557 ~~~~~~a~vls~~l~~r~ 574 (590)
+++++++.++.....+|+
T Consensus 384 ~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 384 AGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999888876554333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=162.55 Aligned_cols=346 Identities=14% Similarity=0.118 Sum_probs=208.6
Q ss_pred cccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 33 YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 33 Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
+.....-|.+++++|+|.++.+++..+..++... .++.|++.||+|+|.++.++.++..++..+... . +++|
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~-----~--~~~~ 92 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL-----S--SSYL 92 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH-----h--CcHH
Confidence 3555577899999999999999987777777754 789999999999999999999998887654322 2 2467
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhh
Q 007766 112 VLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAF 190 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~ 190 (590)
.+.+..++.|.+.+...........+++|+ +|+.+.|+...+..++..+-.++...+.
T Consensus 93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--------------------- 151 (382)
T PRK10091 93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS--------------------- 151 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh---------------------
Confidence 777777788877776655555666788976 6899999888877777766554433220
Q ss_pred heeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCC
Q 007766 191 MFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPP 270 (590)
Q Consensus 191 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 270 (590)
+ ..+.+.. |.+.. ....+..+.+.. +.
T Consensus 152 ------------~--~~gwr~~-----------f~~~~---------------~~~~~~~~~~~~---------~l---- 178 (382)
T PRK10091 152 ------------Q--EFSWRYT-----------FLLIA---------------VFNIAVLASIYF---------WV---- 178 (382)
T ss_pred ------------h--hccHHHH-----------HHHHH---------------HHHHHHHHHHHH---------hC----
Confidence 0 0011111 10000 000000000000 00
Q ss_pred CCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 007766 271 PPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGED 350 (590)
Q Consensus 271 ~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d 350 (590)
|+.+ ++.+. + .+
T Consensus 179 --------p~~~-------------------~~~~~-~------------------------------~~---------- 190 (382)
T PRK10091 179 --------PDIR-------------------DEAKG-G------------------------------LR---------- 190 (382)
T ss_pred --------CCCC-------------------ccccc-C------------------------------HH----------
Confidence 1100 00000 0 00
Q ss_pred CCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 351 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 351 ~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
...+.+|++++|.+++..++....-..+.+...+..+ ..|.+... ...++.++++.+||++.|+++||+++++.
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-- 267 (382)
T PRK10091 191 -EQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-- 267 (382)
T ss_pred -HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH--
Confidence 0124577888998877665543222222233334443 35665543 47789999999999999999999987552
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHhhhhccch-hhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhh
Q 007766 428 RPVAMAVAQVVMAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWA-IVPAAASELFGLKSFGALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~-~~-~~~~l~~~~~liG~~yG~~~~-l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~ 504 (590)
+.....++.++.+++. .. ......+...+.++.+++... .....+.+.++.++.|...+ .....+|..+ +
T Consensus 268 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~-G 340 (382)
T PRK10091 268 ----AAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGG--QIAFNLGSAI-G 340 (382)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHH--HHHHHHHHHH-H
Confidence 2344444455543332 22 222334444455555443332 22345567777777776433 3456778776 7
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
|.++|.++|.+. -|+..|.+.+.++++++....
T Consensus 341 p~~~G~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 341 AYCGGMMLTLGL-------------------------------AYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHhHHHHHccc-------------------------------CcchHHHHHHHHHHHHHHHHH
Confidence 889999999755 299999998877766555444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=168.56 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=116.8
Q ss_pred HHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHh----cCCccc--chhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 354 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 354 ~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~----g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
++.+|++.+|.+.+.+.+....-.++.........+. +.+... ...++..+.+..|.+.+|+++||++|++..
T Consensus 217 ~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~- 295 (420)
T PRK09528 217 LALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL- 295 (420)
T ss_pred HHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-
Confidence 5678889988766544333322222222233333322 222221 356667788999999999999999986632
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhH-HHhhhhhHHHHhhH
Q 007766 428 RPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLIFSG 505 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~-~~~a~~~g~~i~~~ 505 (590)
....++..++.++... ..+..+++...+.|+.++......-..+.|.++.|..++.|+. ..++..+|+.+ ++
T Consensus 296 -----~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i-g~ 369 (420)
T PRK09528 296 -----LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF-LS 369 (420)
T ss_pred -----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH-HH
Confidence 3333344444333332 2344566667777777777666666788999999999998876 45667788876 68
Q ss_pred hHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 506 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 506 ~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
.+.|.++|..+ |+.+|.+.+++.+++.++.+.
T Consensus 370 ~~~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 370 TLAGNLYDSIG--------------------------------FQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHhhC--------------------------------chHHHHHHHHHHHHHHHHHHH
Confidence 89999999655 899999998887776665554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=166.11 Aligned_cols=405 Identities=13% Similarity=0.150 Sum_probs=224.7
Q ss_pred hcccchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGV 87 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~ 87 (590)
...+++|..+....+..+..+-. +..+...|++++++|+|+.+.+.+.....++.. .+++.|.+.||+|+|.++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 92 (496)
T PRK03893 13 HLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI 92 (496)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33456676555555554444433 455667789999999999999987666666664 4789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHH
Q 007766 88 LQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYI 166 (590)
Q Consensus 88 ~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~ 166 (590)
++..++..++.+ . .++|.+.+..++.|.+.+..+.++.....++||+ +||.+.|+......+++.+-..+..
T Consensus 93 ~~~~~~~~~~~~--~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 93 VLFSVGTLACGF--A-----PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHH--H-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888765443 1 2466666677777888887778888888999985 6899999999999998877766666
Q ss_pred Hh-cCChhhHHHHHHHhhHHHHHhhheeeeeccCCcc--ccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhH-H
Q 007766 167 MI-SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQ--VRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNV-L 242 (590)
Q Consensus 167 ~~-~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~--~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~-~ 242 (590)
.+ +.-.....++++.++.++.++. .+..|+... ++++.+....-.. . . .....+.. .
T Consensus 166 ~l~~~~~w~~~f~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~------~-~---------~~~~~~~~~~ 226 (496)
T PRK03893 166 LVVPVWGWRALFFIGILPIIFALWL---RKNLPEAEDWKEKHAGKAPVRTMV------D-I---------LYRGEHRIIN 226 (496)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHH---HHhCCCchhhhhhccccccchhHH------H-H---------HhcchhHHHH
Confidence 55 3223333333444443333222 222332211 0001100000000 0 0 00000000 0
Q ss_pred HHHHHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHH
Q 007766 243 TVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIA 322 (590)
Q Consensus 243 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (590)
..........+... +.. . ..+..... . . ...
T Consensus 227 ~~~~~~~~~~~~~~--------~~~-~---~~~~~~~~----------------~--------------------~-~~~ 257 (496)
T PRK03893 227 ILLTLAAAAALWFC--------FAG-N---LQNAAIVA----------------V--------------------L-GLL 257 (496)
T ss_pred HHHHHHHHHHHHHH--------HHh-h---hcchhHHH----------------H--------------------H-HHH
Confidence 00000000000000 000 0 00000000 0 0 000
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chh
Q 007766 323 HLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYV 399 (590)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~V 399 (590)
- ..-... -. .+.+ +. +.+.++.+.+..++....+..+...+..+.+ +.|.+... ...
T Consensus 258 ~-~~~~~~----~~--~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~ 317 (496)
T PRK03893 258 C-AAIFIS----FM--VQSS--GK-----------RWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVL 317 (496)
T ss_pred H-HHHHHH----HH--HHhc--cc-----------chhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 0 000000 00 0000 00 1123444444444433333333344555664 56776543 477
Q ss_pred HHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH-hcCch--hHHHHHHHHHhhhhccchhhHHHH
Q 007766 400 SMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPG--EIYVTTVLVGLSYGAHWAIVPAAA 476 (590)
Q Consensus 400 sl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~-~~~~~--~l~~~~~liG~~yG~~~~l~P~i~ 476 (590)
+...+...+|++.+|+++||++|++.+ .+...+..+..+.+. ..... .+.....+.++...+...+.|+++
T Consensus 318 ~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (496)
T PRK03893 318 FFSGFGAAVGCCVGGFLGDWLGTRKAY------VCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLI 391 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 889999999999999999999886522 222222222222221 11121 222223333444445678899999
Q ss_pred HHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 477 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 477 ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
.|.+..++.|+.+|+.+....+|+.+ +|.+.|.++|..+
T Consensus 392 ~~~~~~~~~g~~~~~~~~~~~~g~~l-gp~l~g~l~~~~g 430 (496)
T PRK03893 392 GGYFDTEQRAAGLGFTYNVGALGGAL-APILGALIAQRLD 430 (496)
T ss_pred HhhCCHHHhhcccchhhhhhhHHHHH-HHHHHHHHhccCC
Confidence 99999999999999998888898876 7999999998755
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-15 Score=158.45 Aligned_cols=349 Identities=9% Similarity=0.044 Sum_probs=213.0
Q ss_pred hcccchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGV 87 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~ 87 (590)
+..++-|..+........+.++. |.-...-|++.+++|++.+|.+.+.....++. ...++.|.+.||+|+|.++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~ 92 (394)
T PRK10213 13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFA 92 (394)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 34445577666665554444443 44444678899999999999999644444444 45789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHH
Q 007766 88 LQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYI 166 (590)
Q Consensus 88 ~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~ 166 (590)
++..+++.+..+ . .++|.+.+.-++.|.+.+..+..+.....++|| ++||.+.|+..+..+++..+-..+..
T Consensus 93 ~~~~~~~~~~~~--~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 93 VLLTLSCLLVSF--A-----NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HHHHHHHHHHHH--H-----ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887655322 1 246777777778888888777888888889997 56899999999988888766655443
Q ss_pred HhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHH
Q 007766 167 MISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLA 246 (590)
Q Consensus 167 ~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 246 (590)
.+ .+ ..+.+.. |.+.. ...
T Consensus 166 ~l---------------------------------~~--~~gw~~~-----------f~~~~---------------~l~ 184 (394)
T PRK10213 166 FL---------------------------------GE--LIGWRNV-----------FNAAA---------------VMG 184 (394)
T ss_pred HH---------------------------------Hh--hcCHHHH-----------HHHHH---------------HHH
Confidence 32 00 0011101 10000 000
Q ss_pred HHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHH
Q 007766 247 VGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQA 326 (590)
Q Consensus 247 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (590)
++..+++.. ..| | .| + + ++
T Consensus 185 ~~~~l~~~~-----------~~p-~---~~---~----------------------~-~~-------------------- 203 (394)
T PRK10213 185 VLCIFWIIK-----------SLP-S---LP---G----------------------E-PS-------------------- 203 (394)
T ss_pred HHHHHHHHH-----------HCC-C---CC---c----------------------c-cc--------------------
Confidence 000000000 000 0 00 0 0 00
Q ss_pred HHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HHHhcCCccc--chhHHHH
Q 007766 327 KLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTS--IYVSMIS 403 (590)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s~g~~~~~--~~Vsl~s 403 (590)
+. ..+.++.+|++.+|.+.+..++.......+.....+. .+++|.+... ...+..+
T Consensus 204 ------------------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~ 262 (394)
T PRK10213 204 ------------------HQ---KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFG 262 (394)
T ss_pred ------------------cc---hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 00 0013467889999987665444333222223333343 3456776543 3566677
Q ss_pred hhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcc
Q 007766 404 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY-AIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL 482 (590)
Q Consensus 404 i~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~-~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~ 482 (590)
+.+.+|++++|.+.||..| ...+....+......++. ....+..+.+..++.|+++|......++.+.+.. +
T Consensus 263 ~~~iig~~~~~~l~~r~~~------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-~ 335 (394)
T PRK10213 263 IASFVGTSLSSFILKRSVK------LALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL-A 335 (394)
T ss_pred HHHHHHHHHHHHHHhccch------hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC-c
Confidence 8888888888888887432 112222222222222222 2223446677888899999999998998777766 4
Q ss_pred cchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 483 KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 483 k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
++.+.-.++.+....+|..+ ++.++|.++|..+
T Consensus 336 ~~~~~~~~~~~~~~~lg~~~-G~~l~G~l~~~~g 368 (394)
T PRK10213 336 DQAEKAGSIQVAVIQLANTC-GAAIGGYALDNIG 368 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence 66667777776777777776 6889999999655
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=158.38 Aligned_cols=385 Identities=10% Similarity=0.038 Sum_probs=217.6
Q ss_pred hcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007766 28 CAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLP 106 (590)
Q Consensus 28 ~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~ 106 (590)
..-..+.++.+-|.+.+++|+|+.+..++.....++. ...++.|++.||+|+|.+..++.++..+++.+.. ..
T Consensus 22 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-----~~- 95 (471)
T PRK10504 22 QSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA-----LS- 95 (471)
T ss_pred HHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-----Hh-
Confidence 3334456667788899999999999988766656664 4578999999999999999999888777765422 22
Q ss_pred CchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHHhhH
Q 007766 107 SLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPS 184 (590)
Q Consensus 107 s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~~~~ 184 (590)
.+.+.+.+..++.|.|.+...........+++|+ +||.+.|+.-....+++.+-..+...+ +.......+.+.....
T Consensus 96 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 96 -GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred -CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 2356666677777888777777777777899985 689999998888888776666665554 3222222222221111
Q ss_pred HHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcc-cchhhHHHHHHHHHHHHHHhccccceec
Q 007766 185 IVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLE-VANQNVLTVLAVGLIIIILLPVTIPVVL 263 (590)
Q Consensus 185 ~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 263 (590)
.+..+.... ..|....+ ..++..........+.-.+.....++.. ...........+..++++..
T Consensus 175 ~l~~~~~~~--~~~~~~~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 240 (471)
T PRK10504 175 IIGAIATLM--LMPNYTMQ----TRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLL-------- 240 (471)
T ss_pred HHHHHHHHH--hCCCcccc----CCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHH--------
Confidence 222222221 12221111 1111111000000000000000000000 00000000000000000000
Q ss_pred ccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 007766 264 VFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRK 343 (590)
Q Consensus 264 ~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (590)
+. .+. ++
T Consensus 241 -~~------------------------------------------------------------------~~~----~~-- 247 (471)
T PRK10504 241 -YL------------------------------------------------------------------LHA----RN-- 247 (471)
T ss_pred -HH------------------------------------------------------------------HHH----hc--
Confidence 00 000 00
Q ss_pred CCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHH-HHH-HhcCCccc--chhHHHHhhhhhccccccchhhh
Q 007766 344 GPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQ-ICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEA 419 (590)
Q Consensus 344 ~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~-I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~ 419 (590)
++ +..-..+++|+++|++..+..++.... ........+ ..+ ..|.+... .......+....+++++|.++||
T Consensus 248 -~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 323 (471)
T PRK10504 248 -NN--RALFSLKLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR 323 (471)
T ss_pred -CC--CCccCHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011113588999999887766655433 333333333 334 24555433 24556677778889999999999
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHhc--Cc--hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhh
Q 007766 420 IVRKFAYPRPVAMAVAQVVMAFALLYYAIG--WP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA 495 (590)
Q Consensus 420 l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~--~~--~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a 495 (590)
++|++.+ ....++..++.+++... .. ..+.+...+.|++.|..++....++.+.+..++.|..+++..+.
T Consensus 324 ~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 324 FGYRRVL------VATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred cCchHHH------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence 9875532 33333344333332221 11 12345566778889988999999999999999999999999999
Q ss_pred hhhHHHHhhHhHHHHHHhhhhh
Q 007766 496 SPAGSLIFSGVIASGIYDYYAE 517 (590)
Q Consensus 496 ~~~g~~i~~~~l~g~iyd~~~~ 517 (590)
.-+|..+ ++.+.|.+.|..+.
T Consensus 398 ~~~g~~i-g~~i~g~ll~~~g~ 418 (471)
T PRK10504 398 MQLSMSI-GVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHH-HHHHHHHHHHHhhh
Confidence 9898876 68889988887653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=159.03 Aligned_cols=332 Identities=14% Similarity=0.059 Sum_probs=212.0
Q ss_pred HHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 007766 42 IKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120 (590)
Q Consensus 42 Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~ 120 (590)
...+++.+..++.++.....++.. ..++.|.+.||+|+|.++.++.++..++..+..+.- .....++|.+++..++.
T Consensus 25 ~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 102 (365)
T TIGR00900 25 YVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA--LLGGLNIWQVYVLAGIL 102 (365)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH--HcCCCcHHHHHHHHHHH
Confidence 455678999999998777777765 589999999999999999999998877776654432 12223567777777777
Q ss_pred hcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhhheeeeeccC
Q 007766 121 TNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAFMFIVRPIGG 199 (590)
Q Consensus 121 G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~ 199 (590)
|.+.+...++......+++| ++||++.|+......++..+-..+...+-+
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----------------------------- 153 (365)
T TIGR00900 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA----------------------------- 153 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 88888888888888889997 579999999999998887665544432200
Q ss_pred CccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCCCCcccccc
Q 007766 200 HRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLA 279 (590)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~ 279 (590)
..+.+.. |.+.. ...++..+ +.. ..+.+ + ++
T Consensus 154 ------~~g~~~~-----------~~~~~---------------~~~~~~~~-~~~---------~~~~~-~---~~--- 184 (365)
T TIGR00900 154 ------TLGIKWA-----------IWVDA---------------VGFAISAL-LIV---------SVRIP-E---LA--- 184 (365)
T ss_pred ------HhhHHHH-----------HHHHH---------------HHHHHHHH-HHH---------hcccc-c---CC---
Confidence 0000000 00000 00000000 000 00000 0 00
Q ss_pred ccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhc
Q 007766 280 ETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMK 359 (590)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~ 359 (590)
+ ++ ..+. + ++..++ . ...+++++|+
T Consensus 185 ~---~~-----------------~~~~--------~--~~~~~~-------------~------------~~~~~~~~~~ 209 (365)
T TIGR00900 185 A---SE-----------------IQAL--------S--NAVLRD-------------T------------REGIKFVLKN 209 (365)
T ss_pred C---cc-----------------cccc--------c--hhHHHH-------------H------------HhHHHHHHcC
Confidence 0 00 0000 0 000000 0 0124578889
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHH-HHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQI-CQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA 435 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~ 435 (590)
+.+|.+.+..++..........+..+. .++ ++.+... ...++.++...+|++..|.++||.+|++. +...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~ 283 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL------MTGA 283 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH------HHHH
Confidence 999988877666655544444334343 333 5665543 36667888999999999999999887542 2233
Q ss_pred HHHHHHHHHHHHhcC--chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHh
Q 007766 436 QVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 513 (590)
Q Consensus 436 ~~l~~~~~l~~~~~~--~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd 513 (590)
..+..++++++.... ...+++..++.|+++|.......+++.|.+..++.|+.+|+..+...+|..+ ++.+.|.++|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~g~l~~ 362 (365)
T TIGR00900 284 IFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL-GLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333333333333222 3456778889999999999999999999999999999999999999998876 6889999999
Q ss_pred hh
Q 007766 514 YY 515 (590)
Q Consensus 514 ~~ 515 (590)
..
T Consensus 363 ~~ 364 (365)
T TIGR00900 363 HL 364 (365)
T ss_pred Hc
Confidence 64
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=158.88 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=95.5
Q ss_pred cCcccccccccHH-HHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007766 29 AGIGYLFGSISPV-IKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLP 106 (590)
Q Consensus 29 ~Gt~Y~fSvys~~-Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~ 106 (590)
..+-|.++.+.|+ +++++|+|.++.+++.....++.. ..++.|.+.||+|+|.++.++.++..++..+..+. +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~ 88 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----V 88 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----h
Confidence 4455789999996 999999999999998777677664 57999999999999999999999998887664442 1
Q ss_pred CchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHH
Q 007766 107 SLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAIL 161 (590)
Q Consensus 107 s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~ 161 (590)
.++|.+.+..++.|.+.+. +..+.....++|| ++||.+.++..+...++..+-
T Consensus 89 -~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 142 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVA 142 (366)
T ss_pred -hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHH
Confidence 0456665665665665443 4567778889997 579999998876555554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=173.18 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHHHHhcCc-ccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHH
Q 007766 13 NNRWLVFVCSMWIQSCAGI-GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQN 90 (590)
Q Consensus 13 ~~RW~~l~as~~i~l~~Gt-~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~ 90 (590)
+.+|.+++...+..+..|. ....+..-|++++.+|++..+.+++..+..+|..+ .+++|.+.||+|+|.+++++.++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4567776666666655553 23456677889999999999999987777788754 689999999999999999998887
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHH
Q 007766 91 FVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 91 ~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
.++..+..+ . .+++.+.++-++.|.|.+.....+.....+++|. +||.+.++...+..+++.+-..+.
T Consensus 243 ~i~~ll~af-----a--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 243 GFFAFFSSF-----V--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHH-----H--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777654332 1 2356667777888888888888888889999985 699999999999888887665544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=160.10 Aligned_cols=356 Identities=12% Similarity=-0.007 Sum_probs=206.1
Q ss_pred hhcccchHHHHHHHHHHHHhcC-cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHH
Q 007766 9 KSFVNNRWLVFVCSMWIQSCAG-IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIG 86 (590)
Q Consensus 9 ~~~~~~RW~~l~as~~i~l~~G-t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG 86 (590)
++..++.|+..+...+.+++.. ....+...-+++++++|+|+++++.+.....++.. ..++.|.+.||+|+|.++.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 5 ARLGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4445666666666666655432 22334444577999999999999997666666664 478999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHH
Q 007766 87 VLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 87 ~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
.++..++..+... . .++|.+.+..++.|.+.+...........++||+ +|+.+.|+......++..+-..+.
T Consensus 85 ~~~~~~~~~~~~~--~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 157 (406)
T PRK15402 85 VAFFILTCLAILL--A-----QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVG 157 (406)
T ss_pred HHHHHHHHHHHHH--H-----ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888777655433 1 2356666667777777777666677777889986 467777777666665544433222
Q ss_pred HHhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHH
Q 007766 166 IMISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVL 245 (590)
Q Consensus 166 ~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 245 (590)
..+ .. ..+.+..+.. .++.
T Consensus 158 ~~l---------------------~~--------------~~~w~~~~~~-----~~~~--------------------- 176 (406)
T PRK15402 158 AAL---------------------IH--------------VLPWRGMFVL-----FAAL--------------------- 176 (406)
T ss_pred HHH---------------------HH--------------ccCccHHHHH-----HHHH---------------------
Confidence 211 00 0011111100 0000
Q ss_pred HHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHH
Q 007766 246 AVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQ 325 (590)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (590)
..+..+.+.. ..| | ++ + + ++++. + . ++
T Consensus 177 ~~~~~~~~~~-----------~~~-~---~~---~----~----------------~~~~~--------~--~---~~-- 203 (406)
T PRK15402 177 AALSFFGLWR-----------AMP-E---TA---G----R----------------VGEKL--------S--L---KE-- 203 (406)
T ss_pred HHHHHHHHHH-----------hCC-C---CC---c----c----------------ccccc--------c--H---HH--
Confidence 0000000000 000 0 00 0 0 00000 0 0 00
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHH-HHhcCCcccc--hhHHH
Q 007766 326 AKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMI 402 (590)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~~--~Vsl~ 402 (590)
. ..+.++.++++++|.+.+.+.+..............+. +.+|.++... .....
T Consensus 204 -----------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~ 260 (406)
T PRK15402 204 -----------L------------GRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPV 260 (406)
T ss_pred -----------H------------HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHH
Confidence 0 01125688999999987776554432222222223333 3456655432 33445
Q ss_pred HhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-----c-CchhHHHHHHHHHhhhhccchhhHHHH
Q 007766 403 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-----G-WPGEIYVTTVLVGLSYGAHWAIVPAAA 476 (590)
Q Consensus 403 si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-----~-~~~~l~~~~~liG~~yG~~~~l~P~i~ 476 (590)
.+...+|++++|.++||.+|++.. .+..++++++.+++.. . ....+.++.++.|++.|..+......+
T Consensus 261 ~~~~~~g~~~~g~l~~r~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 334 (406)
T PRK15402 261 FGALIAGNLTLARLTSRRPLRSLI------RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLT 334 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 667889999999999999875532 3333344444333221 1 123466778888888888776655554
Q ss_pred HHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 477 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 477 ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
-..- .++.|+-.+++.+...+|..+ ++.+.+.+||..+
T Consensus 335 ~~~~-~~~~g~~~~~~~~~~~~~~~~-g~~~~~~l~~~~~ 372 (406)
T PRK15402 335 LFSS-DVSKGTVSAAMGMLSMLIFTV-GIELSKHAYLGGG 372 (406)
T ss_pred hhhc-cccccHHHHHHHHHHHHHHHH-HHHHHHhcccCCc
Confidence 4333 378899999998888888765 6889999998765
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=159.94 Aligned_cols=144 Identities=14% Similarity=0.224 Sum_probs=109.0
Q ss_pred cchHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHH
Q 007766 13 NNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNF 91 (590)
Q Consensus 13 ~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~ 91 (590)
..+|+.+++..++.++.++. |++.++.+++++|+|..++.++.....+.. ..++++|.+.||+|+|.++.++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~ 87 (400)
T PRK11646 10 LGKYFLLIDNMLVVLGFFVV--FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRA 87 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHH
Confidence 34588888888888777554 677777899999999999999755545444 457999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHH
Q 007766 92 VGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 92 ~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
++..+..+ . .++|.+++..++.|.+.+....+......+++| ++||.+.|+......++..+-..+.
T Consensus 88 ~~~~~~~~--~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~ 155 (400)
T PRK11646 88 AGFATMAI--A-----HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG 155 (400)
T ss_pred HHHHHHHH--h-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765432 2 235666666777777776666666666788896 5799999998888888776654443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=163.22 Aligned_cols=381 Identities=15% Similarity=0.104 Sum_probs=224.8
Q ss_pred ccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 007766 34 LFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWV 112 (590)
Q Consensus 34 ~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~ 112 (590)
..+..-|.+.+++|.|.++.+++.....++.. ..++.|++.||+|+|.++.+|.++..++..+.. .. .+++.
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----~~--~~~~~ 92 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-----VA--PNLEL 92 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----Cc--CCHHH
Confidence 34566789999999999999998767777765 478999999999999999999999888875532 22 24666
Q ss_pred HHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHHhhHHHHHh-
Q 007766 113 LCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPSIVVMA- 189 (590)
Q Consensus 113 l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~~~~~v~l~- 189 (590)
+.+..++.|.+.+...+.+.....++|| ++||++.|+......+++.+-..+...+ +.......+.......++.++
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence 7777788888888888888888899997 6799999999888888887766665555 322222222222222222222
Q ss_pred hheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCC
Q 007766 190 FMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEP 269 (590)
Q Consensus 190 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 269 (590)
...++++ +++ .++++.+ ... ..+.. .....++.. . .+.
T Consensus 173 ~~~~~~~-~~~-~~~~~~d----~~g-------~~l~~-------------------~~~~~~~~~-----~-----~~~ 210 (485)
T TIGR00711 173 AFFILPR-DKP-AASENFD----FLG-------LLLLS-------------------VGLGSLLYG-----L-----SEG 210 (485)
T ss_pred HHHHcCC-ccc-cccCCCc----HHH-------HHHHH-------------------HHHHHHHHH-----H-----hhC
Confidence 2222222 111 1101111 100 00000 000000000 0 000
Q ss_pred CCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007766 270 PPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGE 349 (590)
Q Consensus 270 ~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 349 (590)
+ + +++.++ ++.....-. ..-..-.-...+ .+ + + +
T Consensus 211 ------~---~---------------------~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~--~~-~--~---~ 244 (485)
T TIGR00711 211 ------P---E---------------------RGWFDS-------NEILILSIT-GLVAIIAFVVWE--LT-D--D---N 244 (485)
T ss_pred ------C---C---------------------CCCCCc-------hHHHHHHHH-HHHHHHHHHHHH--Hc-C--C---C
Confidence 0 0 000000 000000000 000000000000 00 0 0 1
Q ss_pred CCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCC
Q 007766 350 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 426 (590)
Q Consensus 350 d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~ 426 (590)
.....+++|+++||...+..++....-......+....++ .|.+..+ ...+...+...+|++++|+++||++||+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~- 323 (485)
T TIGR00711 245 PLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL- 323 (485)
T ss_pred CccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-
Confidence 1223578999999988666554333222222333444444 4665543 35667888899999999999999987542
Q ss_pred chhHHHHHHHHHHHHHHHHHHh--c--C-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHH
Q 007766 427 PRPVAMAVAQVVMAFALLYYAI--G--W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 501 (590)
Q Consensus 427 ~R~~~l~~~~~l~~~~~l~~~~--~--~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~ 501 (590)
+.+...+++++.+++.. . . ...+.+...+.|+++|..+......+.+.++.++.|+-.|+..+...+|+.
T Consensus 324 -----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 398 (485)
T TIGR00711 324 -----VTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS 398 (485)
T ss_pred -----HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH
Confidence 24445555555554431 1 1 234566778889999988877778888889999999999999988889888
Q ss_pred HhhHhHHHHHHhhhh
Q 007766 502 IFSGVIASGIYDYYA 516 (590)
Q Consensus 502 i~~~~l~g~iyd~~~ 516 (590)
+ ++.+.|.++|+..
T Consensus 399 i-g~~i~g~~~~~~~ 412 (485)
T TIGR00711 399 I-GTALITTILTNRT 412 (485)
T ss_pred H-HHHHHHHHHHHHH
Confidence 6 6778999988543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=155.84 Aligned_cols=324 Identities=15% Similarity=0.071 Sum_probs=197.1
Q ss_pred ccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 007766 32 GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPL 110 (590)
Q Consensus 32 ~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~ 110 (590)
...+...-|.+++++|+|.+++.++.....++.. ..++.|.+.||+|+|.++.++.++..++..+.... .++
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 93 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------NNI 93 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccH
Confidence 3444455688899999999999998666666664 47899999999999999999999888887654332 235
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHh
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMA 189 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~ 189 (590)
+.+++..++.|.+.+..+++......+++|+ +||++.|+......++..+-..+...+.
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-------------------- 153 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL-------------------- 153 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6666777788888888888888888899985 6899999999888888776654443220
Q ss_pred hheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCC
Q 007766 190 FMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEP 269 (590)
Q Consensus 190 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 269 (590)
+ ..+.+..+.. .++. ..+..+++.. ..+
T Consensus 154 -------------~--~~~~~~~~~~-----~~~~---------------------~~~~~~~~~~---------~~~-- 181 (385)
T TIGR00710 154 -------------V--WLSWHAIFAF-----LSLA---------------------GILLSALIFF---------ILP-- 181 (385)
T ss_pred -------------H--HcCHHHHHHH-----HHHH---------------------HHHHHHHHHH---------hCC--
Confidence 0 0000000000 0000 0000000000 000
Q ss_pred CCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007766 270 PPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGE 349 (590)
Q Consensus 270 ~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 349 (590)
| ++ ++ + +++ + . + + .
T Consensus 182 -~---~~--~~----~-----------------~~~--~------~--~----~------------~------------- 195 (385)
T TIGR00710 182 -E---TL--PY----E-----------------ARI--Q------I--S----T------------Y------------- 195 (385)
T ss_pred -C---CC--CC----c-----------------ccC--C------H--H----H------------H-------------
Confidence 0 00 00 0 000 0 0 0 0 0
Q ss_pred CCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCC
Q 007766 350 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 426 (590)
Q Consensus 350 d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~ 426 (590)
..+.++.+|++++|.+.+.+.+..+.-..+......+.+ ..|.++.. ...+...+...+|+++.|+++||++|++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 275 (385)
T TIGR00710 196 FETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL 275 (385)
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 012356788899998776655544333222333333443 45665543 356678889999999999999999886532
Q ss_pred chhHHHHHHHHHHHHHHHHHHh---cC---chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhh-hhH
Q 007766 427 PRPVAMAVAQVVMAFALLYYAI---GW---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAG 499 (590)
Q Consensus 427 ~R~~~l~~~~~l~~~~~l~~~~---~~---~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~-~~g 499 (590)
.....++.++.+++.. .. ...++....+.|++++..+...+..+.|.+. ++.|+-.++..... .+|
T Consensus 276 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g 348 (385)
T TIGR00710 276 ------RMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLG 348 (385)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHH
Confidence 2222232322222211 11 1244556777899999999999999999985 66788888765444 445
Q ss_pred HHHhhHhHHH
Q 007766 500 SLIFSGVIAS 509 (590)
Q Consensus 500 ~~i~~~~l~g 509 (590)
+ +.++ +.|
T Consensus 349 ~-i~~~-~~~ 356 (385)
T TIGR00710 349 A-IVGY-LVS 356 (385)
T ss_pred H-HHHH-HHH
Confidence 4 4455 555
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-15 Score=159.96 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=113.0
Q ss_pred HhhhcHHHHHHHHHHHhhhcccce-eecchHHH-HHHhcCCcccc--hhHHHHhhhhhccccccchhhhhhhccCCchhH
Q 007766 355 QALMKADFLLLFFSLVLASGSGLT-VIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV 430 (590)
Q Consensus 355 ~~l~~~~Fwll~~~~~~~~g~Glm-~i~n~~~I-~~s~g~~~~~~--~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~ 430 (590)
++++++++|++.+...+....+.. ....+... .+..|.+.... ...+.++..+++++++|+++||++||+..
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~---- 319 (438)
T PRK09952 244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY---- 319 (438)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----
Confidence 467788888765433222222211 11222222 23456554321 23356677888999999999999987532
Q ss_pred HHHHHHHHHHHHHHH--HHh-c-Cc-hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHH-hhhhhHHHHhh
Q 007766 431 AMAVAQVVMAFALLY--YAI-G-WP-GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFS 504 (590)
Q Consensus 431 ~l~~~~~l~~~~~l~--~~~-~-~~-~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~-~a~~~g~~i~~ 504 (590)
....++.+++.+. ... . .. ..+.+...+.++++|..++..+++++|.|+.|+-++-.|+.+ ++..+|+.+ +
T Consensus 320 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~-~ 396 (438)
T PRK09952 320 --ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF-T 396 (438)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH-H
Confidence 2222222222211 111 1 11 233445566688999999999999999999988777777754 455577765 7
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
|.+.|.++|.++. -|+..|...+.+++++.+..+.+..
T Consensus 397 p~i~g~l~~~~~~------------------------------~~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 397 PFIAAALVTYFGG------------------------------SWHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HHHHHHHHHhcCC------------------------------CchHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999986531 2888888888888888887765543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.4e-15 Score=163.02 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=85.4
Q ss_pred CCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCcc
Q 007766 47 GYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGET 125 (590)
Q Consensus 47 ~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~ 125 (590)
+.+..+..++.....+|..+ .++.|++.||+|+|.++.++.++..++..+..+..+. -+..+++.++++-++.|.+.+
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS-SPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHHHHHHHHHh
Confidence 34555666777777777754 7899999999999999999998888876554332111 011125567777888899999
Q ss_pred ccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHH
Q 007766 126 YFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILT 162 (590)
Q Consensus 126 ~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s 162 (590)
..++.+......+|| ++||++.++.-.+..++..+-.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 988989999999998 5699999998888777764443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-15 Score=161.18 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=136.6
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCc----------ccchhHHHHhhhhhccccccchhhhhhh
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD----------TSIYVSMISIWNFLGRVGGGYFSEAIVR 422 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~----------~~~~Vsl~si~N~~GRl~~G~lSD~l~r 422 (590)
.++++|+++||.+.+..++....-..+........++.|.++ ....+++..+....+++..|.++||++|
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~ 280 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI 280 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 457899999998877766653322222223333344555432 1347788888999999999999999988
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHhcC--c---hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHH-hhh
Q 007766 423 KFAYPRPVAMAVAQVVMAFALLYYAIGW--P---GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LAS 496 (590)
Q Consensus 423 ~~~~~R~~~l~~~~~l~~~~~l~~~~~~--~---~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~-~a~ 496 (590)
|+. +.+..++..++..++.... . ..+++..++.|+++|......+.+++|.++.++.|+.+|+.+ ..+
T Consensus 281 r~~------l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~ 354 (418)
T TIGR00889 281 KKV------MLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN 354 (418)
T ss_pred HHH------HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 663 2444445555443333211 1 246677888999999888899999999999999999999996 678
Q ss_pred hhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007766 497 PAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK 575 (590)
Q Consensus 497 ~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r 575 (590)
.+|+.+ +|.++|.++|+.+..++ .-|+..|.+.++++++++++.....++++
T Consensus 355 ~lg~~i-Gp~l~G~l~~~~g~~~~--------------------------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 355 GFGSLL-GYILSGVMVEKMFAYGT--------------------------FDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hhHHHH-HHHHHHHHHHHhccccC--------------------------CchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 899876 79999999998652211 02999999999999999888887775543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=162.80 Aligned_cols=382 Identities=13% Similarity=0.030 Sum_probs=222.7
Q ss_pred cchHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHH
Q 007766 13 NNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNF 91 (590)
Q Consensus 13 ~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~ 91 (590)
++.+..+++..+-++..+ ....+-|.+.++++.+..+..++.....++.. ..++.|.+.||+|+|.++.++.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~ 93 (417)
T PRK10489 17 PAFRAVFIARFISIFGLG---LLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCG 93 (417)
T ss_pred CChhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHH
Confidence 333444444444444333 33555677788889999999998777777775 47899999999999999999888877
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcC
Q 007766 92 VGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISA 170 (590)
Q Consensus 92 ~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~ 170 (590)
+++.+.... ......++|.+.+..++.|.+.+...++......+++|+ +|+++.|+.....+++..+-..+...+
T Consensus 94 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l-- 169 (417)
T PRK10489 94 LGFIGLALN--AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL-- 169 (417)
T ss_pred HHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH--
Confidence 776554321 111223466565566666777676667677777889974 689999988777777665544333221
Q ss_pred ChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Q 007766 171 NETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLI 250 (590)
Q Consensus 171 ~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (590)
. . ..+.+.. |.+.. ..... .
T Consensus 170 ------~-------------~--------------~~~~~~~-----------~~~~~---------------~~~~~-~ 189 (417)
T PRK10489 170 ------I-------------A--------------AGGVAWN-----------YGLAA---------------AGTFI-T 189 (417)
T ss_pred ------H-------------H--------------HHhhHHH-----------HHHHH---------------HHHHH-H
Confidence 0 0 0000000 00000 00000 0
Q ss_pred HHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 007766 251 IIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQ 330 (590)
Q Consensus 251 ~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (590)
.++.. ..++ .+ ++. + +.+++ . ++
T Consensus 190 ~~~~~---------~l~~------~~--~~~---~----------------~~~~~--------~------~~------- 212 (417)
T PRK10489 190 LLPLL---------RLPA------LP--PPP---Q----------------PREHP--------L------RS------- 212 (417)
T ss_pred HHHHH---------hCCC------CC--CCC---c----------------ccccc--------h------HH-------
Confidence 00000 0000 00 000 0 00000 0 00
Q ss_pred HhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhh
Q 007766 331 AAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNF 407 (590)
Q Consensus 331 ~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~ 407 (590)
.+ ..++..++++.+|.+++..++....+ .+........++ +|.+... ...++.++.+.
T Consensus 213 --------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ 273 (417)
T PRK10489 213 --------LL----------AGFRFLLASPVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAA 273 (417)
T ss_pred --------HH----------HHHHHHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHH
Confidence 00 01245677888877665544332211 122233444455 5665543 35677888899
Q ss_pred hccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchh
Q 007766 408 LGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFG 486 (590)
Q Consensus 408 ~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g 486 (590)
+|++++|+++||..+++ .+....++++++.+++.... ...+.+...+.|+..|....+..+++.|.+..++.|
T Consensus 274 ig~~~~~~l~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T PRK10489 274 LGALTSGWLAHSARPGL------LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG 347 (417)
T ss_pred HHHHHHHHhhhccCcch------HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 99999999998743322 22333444444444333322 234556677777777766677778999999999999
Q ss_pred hhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 007766 487 ALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM 566 (590)
Q Consensus 487 ~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vl 566 (590)
+.+|+......+|..+ ++.+.|.+.|..+ ++.+|.+.+++.++..++
T Consensus 348 ~~~g~~~~~~~~g~~~-g~~l~G~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~ 394 (417)
T PRK10489 348 RINGLWTAQNVTGDAI-GAALLGGLGAMMT--------------------------------PVASASASGFGLLIIGVL 394 (417)
T ss_pred HHHHHHHHHHhhhHhH-HHHHHHHHHHHhc--------------------------------hhhHHHHHHHHHHHHHHH
Confidence 9999999888888876 7889999999755 666777776665555455
Q ss_pred HHHhhhhhhH
Q 007766 567 SLIVVHRTKS 576 (590)
Q Consensus 567 s~~l~~r~r~ 576 (590)
......++|+
T Consensus 395 ~~~~~~~~~~ 404 (417)
T PRK10489 395 LLLVLGELRR 404 (417)
T ss_pred HHHhcccccc
Confidence 5444445554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-15 Score=157.03 Aligned_cols=352 Identities=14% Similarity=0.106 Sum_probs=212.0
Q ss_pred cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 33 YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 33 Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
+.|+..-|++++++|+|.+|..++..+..+|.. ..++.|.+.||+|+|.++ +++++.++.-.+ ..... .+++
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~-~~~~~~~~~~~~--~~~~~----~~~~ 80 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL-FGSLATFAAAAG--RLLDP----FNYE 80 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHHH--HHHHh----ccHH
Confidence 467888899999999999999998777666654 478999999999977654 455544333111 11121 2466
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhh
Q 007766 112 VLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAF 190 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~ 190 (590)
.+.+.-++.|.|.+. +..+.....+||| ++||++.|+...+..+++.+-..+...+
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l---------------------- 137 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI---------------------- 137 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 677777777888875 4555666688897 5799999999999999887664443222
Q ss_pred heeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCC
Q 007766 191 MFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPP 270 (590)
Q Consensus 191 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 270 (590)
. +..+.+..+.. .++. ..+..+++.. +.+
T Consensus 138 -----------~--~~~gWr~~f~~-----~~~l---------------------~~~~~~~~~~---------~lp--- 166 (368)
T TIGR00903 138 -----------Y--TAGGLQLLIIP-----IAAV---------------------AAAGIILVLA---------ALP--- 166 (368)
T ss_pred -----------H--HccchHHHHHH-----HHHH---------------------HHHHHHHHHH---------HcC---
Confidence 0 01122211110 0000 0000000000 000
Q ss_pred CCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 007766 271 PPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGED 350 (590)
Q Consensus 271 ~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d 350 (590)
|+| +. + . +.. + + + + . .
T Consensus 167 ---~~p---~~---~---------------~-~~~--~------~--~----~------------~---~---------- 182 (368)
T TIGR00903 167 ---ALP---FQ---A---------------A-EGF--G------F--K----D------------A---V---------- 182 (368)
T ss_pred ---CCC---CC---C---------------C-CCc--c------h--H----H------------H---H----------
Confidence 011 00 0 0 000 0 0 0 0 0 0
Q ss_pred CCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcccchhHHHHhhhhhccccccchhhhhhhccCCchhH
Q 007766 351 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV 430 (590)
Q Consensus 351 ~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~ 430 (590)
..+++++|++++|.+++++++....=..+.+-+.++.++.|++.. .-...++....|-+..|+++||+.|+.+ |..
T Consensus 183 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g~~g~~~~~d~~~r~~~--r~~ 258 (368)
T TIGR00903 183 KEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI--AGDAVALAILAGLIGVAVIPDRVARAGL--RSI 258 (368)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHHHHHhhHHhhhhhh--HHH
Confidence 024689999999999998888766544444556777777676543 2233444455566667999999987542 222
Q ss_pred HHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHH
Q 007766 431 AMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS 509 (590)
Q Consensus 431 ~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g 509 (590)
.......++++..+++... .+........+.|+..+..++++.++++|.|.+++-|+-.|+.....-+|+.. +|.+.+
T Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~ 337 (368)
T TIGR00903 259 YIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAM 337 (368)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHH
Confidence 2222223333333333322 23334445556677777788888899999999999999999999888888876 466666
Q ss_pred HHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 510 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 510 ~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
.+.. + .+..|.+.+..++++.+..+
T Consensus 338 ~~~~--~--------------------------------~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 338 LFIS--S--------------------------------AEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHhc--C--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 5552 2 45567777777777666643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=158.79 Aligned_cols=129 Identities=12% Similarity=-0.016 Sum_probs=94.6
Q ss_pred ccccccc---HHHHHHh--------CCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHH
Q 007766 33 YLFGSIS---PVIKAHM--------GYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLI 100 (590)
Q Consensus 33 Y~fSvys---~~Lk~~l--------~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~ 100 (590)
|..++++ +.+++.+ |++.++.+++.....+|.. ..++.|.+.||+|+|.+++++.++..++..+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~ 105 (479)
T PRK10077 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWP 105 (479)
T ss_pred cccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444 4466666 8898999998777777775 47899999999999999999999987776554431
Q ss_pred H---hcC-CCC-chHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHH
Q 007766 101 V---TNR-LPS-LPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAIL 161 (590)
Q Consensus 101 ~---~g~-i~s-~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~ 161 (590)
- ... .++ ..++.+.++-++.|.+.+..+..+.....+++|+ +||.+.|+.-.+..++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~ 172 (479)
T PRK10077 106 EFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV 172 (479)
T ss_pred ccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 0 000 011 1134455667888999999988888899999984 69999999888887776654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=151.12 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=116.6
Q ss_pred hhhcHHHHHHHHHHHhhhcccceeecchHHHH-HHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHH
Q 007766 356 ALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 432 (590)
Q Consensus 356 ~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l 432 (590)
.++++++|+++...++..+...++........ +..|.++.. ...++..+.+..+++..|+++||++||+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------ 268 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM------ 268 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH------
Confidence 56677888777665544443222333333343 456666543 245556677888999999999999886522
Q ss_pred HHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHH
Q 007766 433 AVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI 511 (590)
Q Consensus 433 ~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~i 511 (590)
.....+..+.++.+.. .....+++...+.|+++|.........+.|.+. ++.++..|+......+|..+ +|.++|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-g~~~~g~~ 346 (375)
T TIGR00899 269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWII-AGSVGGIL 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2222222222222222 223345566677799999888888888999985 56688889888777788876 78899999
Q ss_pred HhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 512 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 512 yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
+|..+ |+..|.+.+.+++++.++.+.
T Consensus 347 ~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 347 AERWS--------------------------------YHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHhcc--------------------------------chhHHHHHHHHHHHHHHHHhe
Confidence 88644 888999999888888777653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=156.77 Aligned_cols=363 Identities=12% Similarity=0.081 Sum_probs=216.0
Q ss_pred HHhcCccccc-ccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 007766 26 QSCAGIGYLF-GSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTN 103 (590)
Q Consensus 26 ~l~~Gt~Y~f-Svys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g 103 (590)
-+.-|-.+.. +..-|++++++|+|.+|..++.....++.. .+++.|++.||+|+|.++.+|.++..+|..+.+.+ .
T Consensus 12 f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~--~ 89 (410)
T TIGR00885 12 FALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA--A 89 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--H
Confidence 3334444444 366799999999999999998777777775 47899999999999999999999999997664332 2
Q ss_pred CCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHh-cCC-hhhHHHHHH
Q 007766 104 RLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMI-SAN-ETSLIFLVA 180 (590)
Q Consensus 104 ~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~-~~~fllfla 180 (590)
.. .+++.+....++.|.|.+..++++-....+..|+ +|+...++.-+++++++.+-..+...+ ..+ ...-..
T Consensus 90 ~~--~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~--- 164 (410)
T TIGR00885 90 EI--MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD--- 164 (410)
T ss_pred hh--ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh---
Confidence 22 2467677778888999999988777777778874 589999999999999887766555443 110 000000
Q ss_pred HhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccc
Q 007766 181 VGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIP 260 (590)
Q Consensus 181 ~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 260 (590)
.. . ...+++........ ....-..|++...+. .... +++.
T Consensus 165 ---------------~~--~-~~~~~~~~~~~~~~-~~~w~~~fl~~a~~~---------------~~~~-~~~~----- 204 (410)
T TIGR00885 165 ---------------VL--D-KLSPEELSAIKHSD-LASVQTPYMIIGAVV---------------LAVA-LLIM----- 204 (410)
T ss_pred ---------------hh--h-hcCHHHHHHHHHHH-HHHHHHHHHHHHHHH---------------HHHH-HHHH-----
Confidence 00 0 00000000000000 000001121111000 0000 0000
Q ss_pred eecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 007766 261 VVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVK 340 (590)
Q Consensus 261 ~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (590)
+.+ .| +.+ ++ ++++.
T Consensus 205 ----~~~-------~p---~~~-~~----------------~~~~~---------------------------------- 219 (410)
T TIGR00885 205 ----LTK-------MP---ALN-HS----------------DAKQI---------------------------------- 219 (410)
T ss_pred ----Hhc-------CC---CCC-cc----------------ccccc----------------------------------
Confidence 000 11 100 00 00000
Q ss_pred ccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCc--c--cchhHHHHhhhhhccccccch
Q 007766 341 RRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD--T--SIYVSMISIWNFLGRVGGGYF 416 (590)
Q Consensus 341 ~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~--~--~~~Vsl~si~N~~GRl~~G~l 416 (590)
+. ..+.++.+|++++|+..+..++-.+.-....+++.+..++.+... . ....+..-..-.+||+++|++
T Consensus 220 ----~~---~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l 292 (410)
T TIGR00885 220 ----SF---SASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWL 292 (410)
T ss_pred ----cc---hhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012246788999999877777766665555566677666543221 1 124555556678999999999
Q ss_pred hhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhh
Q 007766 417 SEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS 496 (590)
Q Consensus 417 SD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~ 496 (590)
.||+++++ .+.+..++.++.+++...........+.+++|++.+..|++.-++..+.+|.+.-..--++++ +
T Consensus 293 ~~r~~~~~------~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~- 364 (410)
T TIGR00885 293 ISYLAAHK------VLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A- 364 (410)
T ss_pred HHHcCHHH------HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-
Confidence 99997644 233444444444444444333334677778899999999999999999998665333344433 3
Q ss_pred hhHHHHhhHhHHHHHHhhhh
Q 007766 497 PAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 497 ~~g~~i~~~~l~g~iyd~~~ 516 (590)
.+|+.+ .|.+.|.+.|..+
T Consensus 365 ~~Gga~-~p~l~G~~~d~~~ 383 (410)
T TIGR00885 365 IIGGGI-VPPLQGFIIDMKE 383 (410)
T ss_pred Hhccch-HHHHHHHHHHHhc
Confidence 388877 4889999999654
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-14 Score=157.73 Aligned_cols=127 Identities=11% Similarity=0.103 Sum_probs=83.0
Q ss_pred hHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH-HHHHHH--HHHHhc-CchhHH
Q 007766 383 LGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV-VMAFAL--LYYAIG-WPGEIY 455 (590)
Q Consensus 383 ~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~-l~~~~~--l~~~~~-~~~~l~ 455 (590)
+.++.+ .+|.+... ...++..+...+|++++|+++||++||+.+ .+..+ ..+.+. +..... ....++
T Consensus 273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (490)
T PRK10642 273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV------ILGSVALFVLAIPAFILINSNVIGLIF 346 (490)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 444443 45665432 345667788889999999999999997632 22221 111111 111222 234566
Q ss_pred HHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 456 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 456 ~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
++..+.|+++|..++..+.++.|.|..+.-|+-.|+.+....+++.+ +|.+.|++.|..+
T Consensus 347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~-~p~i~g~l~~~~~ 406 (490)
T PRK10642 347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL-TPTLAAWLVESTQ 406 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 77788899999999999999999999998888888744333344444 5888888887543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-16 Score=159.10 Aligned_cols=330 Identities=20% Similarity=0.273 Sum_probs=203.4
Q ss_pred cccccH-HHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 007766 35 FGSISP-VIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWV 112 (590)
Q Consensus 35 fSvys~-~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~ 112 (590)
+...-+ .+++++|+|.+|++++.....++. ..+++.|.+.||+|+|.++.++.++..++..+.. +. + +.|.
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~~---~--~~~~ 87 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA--FA---S--NFWL 87 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--HH---C--CHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh--hh---h--hHHH
Confidence 333445 788999999999999866666666 4689999999999999999999999988833333 22 2 3556
Q ss_pred HHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhhh
Q 007766 113 LCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAFM 191 (590)
Q Consensus 113 l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~~ 191 (590)
+.+..++.|.+.+..+.+......+++|+ +|+.+.|+......++..+-..+...+.
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---------------------- 145 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI---------------------- 145 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh----------------------
Confidence 67778888989888999999999999986 8999999999999999877765554430
Q ss_pred eeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCC
Q 007766 192 FIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPP 271 (590)
Q Consensus 192 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 271 (590)
+ ..+.+..+.. .++. ..+..+ +.. . +..++
T Consensus 146 -----------~--~~~~~~~~~~-----~~~~---------------------~~~~~i-l~~-~-------~~~~~-- 175 (352)
T PF07690_consen 146 -----------S--YFGWRWAFLI-----SAIL---------------------SLIAAI-LFI-L-------FLPEP-- 175 (352)
T ss_dssp -----------C--HCHHCCHHHH-----HHHH---------------------HHHHHH-HHH-C-------CC-----
T ss_pred -----------h--cccccccccc-----ccch---------------------hhhhhh-hHh-h-------hhhhc--
Confidence 0 0000001100 0000 000000 000 0 11100
Q ss_pred CCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 007766 272 PVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDF 351 (590)
Q Consensus 272 ~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~ 351 (590)
+ ++. + .+++++++ + + . ++ +.. +
T Consensus 176 ----~--~~~---~---------------~~~~~~~~------~--~----------------~----~~---~~~--~- 197 (352)
T PF07690_consen 176 ----P--PPR---E---------------RESPKESE------S--K----------------K----PK---PLK--P- 197 (352)
T ss_dssp ----S--TTT---T-----------------SSTTTT--------------------------H----HH---CCC--H-
T ss_pred ----c--ccc---c---------------cccccccc------c--c----------------c----cc---ccc--c-
Confidence 0 000 0 00000000 0 0 0 00 110 1
Q ss_pred CHHHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HHHhcCC-cccc--hhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 352 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYA-DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 352 t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s~g~~-~~~~--~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
.+++..+++.+|.+++.+++....-..+...+..+ .+..|.+ .... ..++..+....++++.|.++||+++++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 276 (352)
T PF07690_consen 198 GFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL- 276 (352)
T ss_dssp -CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-
Confidence 24678888888855555444432222222333333 3556777 3332 57888888888999999999999874422
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhH
Q 007766 428 RPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG 505 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~ 505 (590)
........+..+...+.... .+...++...+.|+++|..+....+++.|.+..++.|+.+|+..+...+|+.+ +|
T Consensus 277 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-gP 352 (352)
T PF07690_consen 277 --LIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-GP 352 (352)
T ss_dssp --HHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 11122222222221111122 23456678888999999999999999999999999999999999999888875 44
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=150.25 Aligned_cols=347 Identities=17% Similarity=0.088 Sum_probs=198.9
Q ss_pred ccccccccHHHHHHhCC--ChhhHHHHHHHHHHhh------hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 007766 32 GYLFGSISPVIKAHMGY--NQRQVSLLGVAKDLGD------SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTN 103 (590)
Q Consensus 32 ~Y~fSvys~~Lk~~l~~--sq~~~~~is~a~~~G~------~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g 103 (590)
.|.++..++.+++++.+ +.++..++.....++. ...++.|++.||+|+|.++.++.++..++..+..+. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~- 86 (394)
T TIGR00883 9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL-P- 86 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC-C-
Confidence 35667778888888765 3344444322222111 235789999999999999999999988887654432 1
Q ss_pred CCCCch---HHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHH
Q 007766 104 RLPSLP---LWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLV 179 (590)
Q Consensus 104 ~i~s~~---~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfl 179 (590)
...... .+.+++.-++.|.+.+....++.....+++| ++||.+.++...+..++..+-..+...+
T Consensus 87 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~----------- 155 (394)
T TIGR00883 87 SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL----------- 155 (394)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 110001 1234455677788888888888888899996 5799999998888887766654333221
Q ss_pred HHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhcccc
Q 007766 180 AVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTI 259 (590)
Q Consensus 180 a~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 259 (590)
.. ....... ...+.+..+.. .++ ..++.+....
T Consensus 156 ----------~~----~~~~~~~--~~~~w~~~~~~-----~~~------------------------~~~~~~~~~~-- 188 (394)
T TIGR00883 156 ----------SY----LLGDDAL--LEWGWRIPFLV-----SAV------------------------LVLIGLYLRR-- 188 (394)
T ss_pred ----------HH----hcCHHHh--hccchHHHHHH-----HHH------------------------HHHHHHHHHH--
Confidence 00 0000000 01111111100 000 0000000000
Q ss_pred ceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhh
Q 007766 260 PVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRV 339 (590)
Q Consensus 260 ~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (590)
..+ |++ +. + .++ ++ .
T Consensus 189 -----~~~------~~~--~~----~---------------~~~-------------------------------~~--~ 203 (394)
T TIGR00883 189 -----NLE------ETP--VF----E---------------KAQ-------------------------------EK--H 203 (394)
T ss_pred -----hcC------CCh--hH----H---------------HHH-------------------------------hc--c
Confidence 000 000 00 0 000 00 0
Q ss_pred cccCCCCCCCCCCHHHhhhcHH--HHHHHHHHHhhhcccceeecchHHHH-HHhcCCccc--chhHHHHhhhhhcccccc
Q 007766 340 KRRKGPRRGEDFTLPQALMKAD--FLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS--IYVSMISIWNFLGRVGGG 414 (590)
Q Consensus 340 ~~~~~p~~~~d~t~~~~l~~~~--Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~--~~Vsl~si~N~~GRl~~G 414 (590)
+ + ...+.++.++++. +|...+..++......+....+..+. +..|.+... ...++..+.+.++++++|
T Consensus 204 ~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 276 (394)
T TIGR00883 204 K----K---KRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSG 276 (394)
T ss_pred c----c---ccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1123456677765 77776666554443333334455555 345655443 356778899999999999
Q ss_pred chhhhhhhccCCchhHHHHHHHHHHHHHHH-HHHh---cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhh
Q 007766 415 YFSEAIVRKFAYPRPVAMAVAQVVMAFALL-YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYN 490 (590)
Q Consensus 415 ~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l-~~~~---~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG 490 (590)
+++||++||+.. +....+....+.. +... .....+++...+.|+++|..+....+.+.|.+..++-++.+|
T Consensus 277 ~l~dr~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 351 (394)
T TIGR00883 277 ALSDRIGRRPVL-----IIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGAS 351 (394)
T ss_pred HHHHHhchHHHH-----HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEee
Confidence 999999886522 1111111111211 1111 123345566778899999999999999999999999898888
Q ss_pred HH-HhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 491 FL-TLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 491 ~~-~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+. .++..+|+.+ +|.+.|.++|+.+
T Consensus 352 ~~~~~~~~~g~~~-~p~~~g~l~~~~g 377 (394)
T TIGR00883 352 LAYNLAGAIFGGF-APYIAAALVAMTG 377 (394)
T ss_pred ehhHhHHHHHhhH-HHHHHHHHHHHcC
Confidence 74 4566677765 6999999999765
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=152.09 Aligned_cols=346 Identities=14% Similarity=0.069 Sum_probs=199.6
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHH
Q 007766 15 RWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVG 93 (590)
Q Consensus 15 RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~G 93 (590)
.|..+..+++.++...+.+.+.-.-|++++++|++.+++.++.....++.. .+++.|.+.||+|+|.++.++.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 84 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG 84 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence 466666676666666566666555567899999999999998666677764 5799999999999999999999888777
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCC-CCchhhhhHhhhhhhHHHHHHHHHHhcCCh
Q 007766 94 YGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLSGAILTQIYIMISANE 172 (590)
Q Consensus 94 Y~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~-RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~ 172 (590)
..+... . .+++.+++..++.|.|.+...........++||++ |+.+.+......++++.+-..+...+
T Consensus 85 ~~~~~~--~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l---- 153 (401)
T PRK11043 85 SLGMLW--V-----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL---- 153 (401)
T ss_pred HHHHHH--h-----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 655332 1 23566666666666666555444455567889865 56666666666666655544333221
Q ss_pred hhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q 007766 173 TSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIII 252 (590)
Q Consensus 173 ~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (590)
. + ..+.+..+.. .+.. .....+
T Consensus 154 -----------------~------------~--~~g~~~~~~~-----~~~~---------------------~~~~~~- 175 (401)
T PRK11043 154 -----------------L------------N--HFGWQAIFAT-----LFAI---------------------TLLLIL- 175 (401)
T ss_pred -----------------H------------h--cCChHHHHHH-----HHHH---------------------HHHHHH-
Confidence 0 0 0011100000 0000 000000
Q ss_pred HHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 007766 253 ILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAA 332 (590)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (590)
+.. +.. +++ ++ . ++ +
T Consensus 176 ~~~---------~~~------~~~--~~----------------------~-~~-~------------------------ 190 (401)
T PRK11043 176 PTL---------RLK------PSK--KA----------------------R-KQ-S------------------------ 190 (401)
T ss_pred HHH---------HcC------CCC--Cc----------------------c-cc-c------------------------
Confidence 000 000 000 00 0 00 0
Q ss_pred hhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcccc--hhHHHHhhhhhcc
Q 007766 333 AEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGR 410 (590)
Q Consensus 333 ~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~~--~Vsl~si~N~~GR 410 (590)
+ ...++++++|++++|...+.+.+..+.-..+.+....+.++.|.+.... ......+....|+
T Consensus 191 ------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~ 255 (401)
T PRK11043 191 ------------Q---DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGG 255 (401)
T ss_pred ------------h---HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0113467888999997766655544332233333444556667665432 3344566778889
Q ss_pred ccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cC--chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhh
Q 007766 411 VGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGA 487 (590)
Q Consensus 411 l~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~--~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~ 487 (590)
+..+++.||+++++.. + ...+...+..+...+... .. ...+.+...+.|+++|..+.+..+.+.|.+ .++-|+
T Consensus 256 ~~~~~l~~r~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~ 331 (401)
T PRK11043 256 YGCRAALQKWGGEQLL-P--WLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF-PQATGK 331 (401)
T ss_pred HHHHHHHHHcCHHHHH-H--HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-cccChH
Confidence 9999999998876532 1 112222222222222222 11 223455567778888887777777777777 467899
Q ss_pred hhhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 488 LYNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 488 nyG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
..|+..+....++.. ++.+.|.+.|.
T Consensus 332 ~~g~~~~~~~~~~~~-~~~~~g~l~~~ 357 (401)
T PRK11043 332 AAALQNTLQLGLCFL-ASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHccCC
Confidence 999888765556655 46677777663
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-14 Score=151.74 Aligned_cols=144 Identities=12% Similarity=-0.113 Sum_probs=91.4
Q ss_pred hcccchHHHHHHHHHHHHhcC-cccccccccHHHHHHhC---CChhhHHHH---HHHHHHhh-hccCccceeeeccchHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAG-IGYLFGSISPVIKAHMG---YNQRQVSLL---GVAKDLGD-SIGFVPGTFVEILPVWS 81 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~G-t~Y~fSvys~~Lk~~l~---~sq~~~~~i---s~a~~~G~-~~gi~~G~~~D~~gpr~ 81 (590)
+.+.+||..++.+.+...... -.+.+++-+|.++++++ .+..|...+ -...-++. ..++++|.+.||+|+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~ 94 (432)
T PRK10406 15 SDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKK 94 (432)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 455677766655533333222 23457777788999885 555543332 11222332 23678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhh
Q 007766 82 INLIGVLQNFVGYGLVWLIVTNRLP--SLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFA 154 (590)
Q Consensus 82 ~~~iG~~l~~~GY~~~~l~~~g~i~--s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~ 154 (590)
++.++.++..++-.+..++ .+... ..+.+++.+.-++.|.|.+..+.++.+...+|+| ++||.+.++.-.+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~ 169 (432)
T PRK10406 95 SMLISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTL 169 (432)
T ss_pred HHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHH
Confidence 9999999887776553321 11100 0112345566778889999888888888899997 57898877654443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-14 Score=151.50 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=95.2
Q ss_pred cchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHH-HHHHHHHhh-h-----ccCccceeeeccchHHHHH
Q 007766 13 NNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSL-LGVAKDLGD-S-----IGFVPGTFVEILPVWSINL 84 (590)
Q Consensus 13 ~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~-is~a~~~G~-~-----~gi~~G~~~D~~gpr~~~~ 84 (590)
..||+...+..+..+....- ..++.+.|+++++++.+++|... ......++. + ..++.|.+.||+|+|.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 90 (434)
T PRK15075 11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI 90 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence 45565433333333333222 45789999999999999887654 322222222 2 2467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHH--------HHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhh
Q 007766 85 IGVLQNFVGYGLVWLIVTNRLPSLPLW--------VLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAG 155 (590)
Q Consensus 85 iG~~l~~~GY~~~~l~~~g~i~s~~~~--------~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~G 155 (590)
++.++..++..+. +..++ ++ ++++.-++.|.+.+..++++.....+||| ++||.+.|+......
T Consensus 91 ~~~~~~~~~~~l~-----~~~~~--~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~ 163 (434)
T PRK15075 91 VTLSIMASGTLLI-----AFVPG--YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ 163 (434)
T ss_pred HHHHHHHHHHHHH-----HhCCc--HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence 9999877776442 33332 33 24556677888888888878888999997 579999998877666
Q ss_pred hhHHH
Q 007766 156 LSGAI 160 (590)
Q Consensus 156 LSa~i 160 (590)
++..+
T Consensus 164 ~g~~~ 168 (434)
T PRK15075 164 VAVVF 168 (434)
T ss_pred HHHHH
Confidence 55433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-13 Score=150.65 Aligned_cols=398 Identities=13% Similarity=0.041 Sum_probs=226.5
Q ss_pred chHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHH
Q 007766 14 NRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNF 91 (590)
Q Consensus 14 ~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~ 91 (590)
++|.++++.++.......- -.-++--|++.+++|.++++.+++..+-.++. ...++.|++.||+|+|.++.+|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3555544444333333221 23444578899999999999999866666665 457899999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhC-C-CCCCchhhhhHhhhhhhHHHHHHHHHHh-
Q 007766 92 VGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNF-P-KSRGPVVGILKGFAGLSGAILTQIYIMI- 168 (590)
Q Consensus 92 ~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knF-P-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~- 168 (590)
+|..+.. .. .++|++.+.-++.|.|.+..+.+......++| | ++||++.|+.....+++..+-..+...+
T Consensus 83 ~~~~~~~-----~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 83 LASLAAA-----FS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHH-----Hc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8875522 22 24677777777777787777776677777898 4 4799999999999999887766666655
Q ss_pred cCChhhHHHHHHH-hhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccc-hhhHHHHHH
Q 007766 169 SANETSLIFLVAV-GPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVA-NQNVLTVLA 246 (590)
Q Consensus 169 ~~~~~~fllfla~-~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~-~~~~~~~~~ 246 (590)
+.-.....+.... ...+..++...++ |-++...+ ++.+..-.... ..+..+....+.+...+. +........
T Consensus 156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l-~~~~~~~~-~~~d~~g~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 229 (495)
T PRK14995 156 EHFYWGSVFLINVPIVLVVMGLTARYV-PRQAGRRD-QPLNLGHALML----IVAILLLVYSAKTALKGFLSLWVTSLTL 229 (495)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCC-CCCChHhHHHH----HHHHHHHHHHHHhccccCCchHHHHHHH
Confidence 3323333332222 2222222222332 21111111 11111101100 001000000000000000 000000000
Q ss_pred HHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHH
Q 007766 247 VGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQA 326 (590)
Q Consensus 247 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (590)
+.-.+++.. +.
T Consensus 230 ~~~~~~l~~---------f~------------------------------------------------------------ 240 (495)
T PRK14995 230 LTGALLLGL---------FI------------------------------------------------------------ 240 (495)
T ss_pred HHHHHHHHH---------HH------------------------------------------------------------
Confidence 000000000 00
Q ss_pred HHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHH
Q 007766 327 KLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMIS 403 (590)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~s 403 (590)
..+ .+ .+.| .-..+++|++.|+...+..++...+-..+........|. .|.+... ......+
T Consensus 241 -------~~e--~~-~~~p-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~ 305 (495)
T PRK14995 241 -------RTQ--LA-ASRP-----MIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVM 305 (495)
T ss_pred -------HHH--hc-CCCC-----CcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 000 00 0001 112578899999887766555433211111122223333 4665543 3566788
Q ss_pred hhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-c---CchhHHHHHHHHHhhhhccchhhHHHHHHh
Q 007766 404 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-G---WPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479 (590)
Q Consensus 404 i~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~---~~~~l~~~~~liG~~yG~~~~l~P~i~ad~ 479 (590)
+...++.++.|.++||++||+ .+....++++++...+.. . .....++..++.|+..|..+......+.+.
T Consensus 306 ~~~~~~~~~~g~l~~r~g~~~------~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~ 379 (495)
T PRK14995 306 VASGFSGPIAGILVSRLGLRL------VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAA 379 (495)
T ss_pred HHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 899999999999999998744 223344444444433221 1 123456778888999998888888888888
Q ss_pred hcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 480 FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
...++.|.-.++..+...+|+.+ ++.+.|.+++..
T Consensus 380 ~~~~~~g~~~~~~~~~~~lG~~~-G~ai~g~i~~~~ 414 (495)
T PRK14995 380 APPEKAAAAGAIETMAYELGAGL-GIAIFGLLLSRS 414 (495)
T ss_pred CCHHhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999988888888876 577888888753
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=147.20 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=97.2
Q ss_pred HHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 007766 25 IQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTN 103 (590)
Q Consensus 25 i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g 103 (590)
+.+...+.+.+..+-|++++++|+|.++.+++.....++... .++.|++.||+|+|.++.+|.++..+++.+....
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--- 88 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--- 88 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 333444445556889999999999999999876666666654 6899999999999999999999988887664331
Q ss_pred CCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHH
Q 007766 104 RLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAIL 161 (590)
Q Consensus 104 ~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~ 161 (590)
.+++.++...++.|.+.+..+..+.....++|| ++|+++.|+.-+...+++.+-
T Consensus 89 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~ 143 (392)
T PRK10473 89 ----ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLA 143 (392)
T ss_pred ----CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555556666777777777777778888997 679999998877666665443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=150.69 Aligned_cols=407 Identities=15% Similarity=0.189 Sum_probs=235.1
Q ss_pred hhhcccchHHHHHHHHHHHHh-cCcccccccccHHHHHHhCCChhhHHHHHHHHHHh-hhccCccceeeeccchHHHHHH
Q 007766 8 LKSFVNNRWLVFVCSMWIQSC-AGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLG-DSIGFVPGTFVEILPVWSINLI 85 (590)
Q Consensus 8 ~~~~~~~RW~~l~as~~i~l~-~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G-~~~gi~~G~~~D~~gpr~~~~i 85 (590)
.|+-.+.||.+++...+-=.+ ==+-=.|++=.|.|+++.++|.+|+..++.+..+. +..=+..|.+.||.+||..+.+
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 445555566565544332111 01112588889999999999999999975444433 2334789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHH
Q 007766 86 GVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQI 164 (590)
Q Consensus 86 G~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i 164 (590)
|-++.++--.+ -|..+ +++.+.+..++-|.=|+++-.+|-.+-++|||+ +||+..++--...-+|+++...+
T Consensus 100 gLilsai~nil-----~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 100 GLILSAIVNIL-----FGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred HHHHHHHHHHH-----Hhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 98886665433 34432 577777778887888888889999999999985 69999999999999999988766
Q ss_pred H--HHhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHH
Q 007766 165 Y--IMISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVL 242 (590)
Q Consensus 165 ~--~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 242 (590)
. ..+ . .+.+.+-.+...
T Consensus 173 ~~la~~------------------------~-----------~~~~w~~~f~~p-------------------------- 191 (448)
T COG2271 173 ALLAFF------------------------A-----------FHGGWRAAFYFP-------------------------- 191 (448)
T ss_pred HHHHHH------------------------H-----------hccchhHHHHHH--------------------------
Confidence 6 222 0 011111111000
Q ss_pred HHHHHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHH
Q 007766 243 TVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIA 322 (590)
Q Consensus 243 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (590)
.++++++.++++. ..+..|++..-| |. |+...++.+ . . +
T Consensus 192 giiaiival~~~~---------~~rd~Pqs~GLP--~i---------------------e~~~~d~~e----~----~-~ 230 (448)
T COG2271 192 GIIAIIVALILLF---------LLRDRPQSEGLP--PI---------------------EEYRGDPLE----I----Y-E 230 (448)
T ss_pred HHHHHHHHHHHHH---------HhCCCccccCCC--CH---------------------HHhhcCchh----h----h-h
Confidence 0111111111111 112221111111 10 010000000 0 0 0
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCCCCCHH-----HhhhcHHHHHHHHHHHhhhcccceeecchHHHH--HHhcCCcc
Q 007766 323 HLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLP-----QALMKADFLLLFFSLVLASGSGLTVIDNLGQIC--QSLGYADT 395 (590)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~-----~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~--~s~g~~~~ 395 (590)
| + + .+++.|.+ -.|++|--|++-+..++.--.=.. |+.=+++. |..+++..
T Consensus 231 ~----------------~----~-~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~ 288 (448)
T COG2271 231 E----------------E----K-ENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLV 288 (448)
T ss_pred h----------------h----c-cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHH
Confidence 0 0 0 00113333 467899999998876653321111 23444443 23354433
Q ss_pred --cchhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC---chhHHHHHHHHHh-hhhccc
Q 007766 396 --SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW---PGEIYVTTVLVGL-SYGAHW 469 (590)
Q Consensus 396 --~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~---~~~l~~~~~liG~-~yG~~~ 469 (590)
...++++=+....|-+++||+|||+-+.++-| .. .+..++..++........ .....++..++|+ =||=.
T Consensus 289 ~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p--~~-~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq- 364 (448)
T COG2271 289 KANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP--MA-LIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ- 364 (448)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch--HH-HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH-
Confidence 35899999999999999999999997655443 11 122222222222222221 2344445555565 34443
Q ss_pred hhhHHHHHHhhcccc-hhhhhhHHHhhhhh-HHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCc
Q 007766 470 AIVPAAASELFGLKS-FGALYNFLTLASPA-GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSI 547 (590)
Q Consensus 470 ~l~P~i~ad~FG~k~-~g~nyG~~~~a~~~-g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~ 547 (590)
..-.+.+--|.+|+ -|+-=|++.+-.-+ |+.. .....|++-|..+
T Consensus 365 -mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~-a~~~~g~i~d~~g------------------------------- 411 (448)
T COG2271 365 -MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAAL-AGLPLGYIADTWG------------------------------- 411 (448)
T ss_pred -HHHHHHHhccccHhhccchhchhhhHHHHhhHHh-cCCcceeeEecCC-------------------------------
Confidence 33333444455554 67777776433333 5443 5556666666533
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 007766 548 CYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 583 (590)
Q Consensus 548 Cy~~~F~i~~~~~~~a~vls~~l~~r~r~~~~~~~~ 583 (590)
+...|++..+.++++.++.+.+.+++++.+++..+
T Consensus 412 -W~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~~~~ 446 (448)
T COG2271 412 -WDGGFIVLSIAALLAILLLLPVWNAEERKIRDEKK 446 (448)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 67789999999999999988888877777665443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.3e-13 Score=142.23 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=99.6
Q ss_pred chHHHH-HHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH-hcCchhHHHH
Q 007766 382 NLGQIC-QSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVT 457 (590)
Q Consensus 382 n~~~I~-~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~-~~~~~~l~~~ 457 (590)
.+.... +.++.++.. ...++..+....+++++|+++||++||+.. ........+...... ...+..+.+.
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM------RVAAVAGVCFYAGMLMAHSPAILLGL 311 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344344 345666543 355666677788999999999999986522 112111122221111 2223334455
Q ss_pred HHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCC
Q 007766 458 TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRD 537 (590)
Q Consensus 458 ~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~ 537 (590)
..+.++++|..++..+....|.+. ++-|+..++......+|..+ ++.+.|.++|..+
T Consensus 312 ~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~-g~~l~G~i~~~~g--------------------- 368 (393)
T PRK15011 312 QLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWII-AGSLAGIVAEIWN--------------------- 368 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhh---------------------
Confidence 566777888888888889999996 56899999887777888876 6889999998654
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 538 QETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 538 ~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
|+..|.+.+.++++++++.+.
T Consensus 369 -----------~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 369 -----------YHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHh
Confidence 888898888887776666553
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-13 Score=143.51 Aligned_cols=141 Identities=12% Similarity=-0.011 Sum_probs=93.2
Q ss_pred cccchHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHH
Q 007766 11 FVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQ 89 (590)
Q Consensus 11 ~~~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l 89 (590)
.+..||+.+...+.. +..-..+.+...-|++.+++|+|..++.++.....++.. ..++.|.+.||+|+|.++.++.++
T Consensus 4 ~~~~~~l~~~~~~~~-~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~ 82 (394)
T PRK11652 4 QRNVNLLFMLVLLVA-VGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSI 82 (394)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence 334555544433332 222333444445578889999999999997666666664 578999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHH
Q 007766 90 NFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGA 159 (590)
Q Consensus 90 ~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~ 159 (590)
..++..+... . .+++.+++..++.|.+.+.....+.....+.+| ++|+.+.++...+..++..
T Consensus 83 ~~~~~~~~~~--~-----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (394)
T PRK11652 83 FILGTLVALF--A-----HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPL 146 (394)
T ss_pred HHHHHHHHHH--H-----ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 8877655332 2 235666666677777666555544445566777 4678777776555544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-13 Score=145.08 Aligned_cols=141 Identities=8% Similarity=0.032 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHH
Q 007766 16 WLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGY 94 (590)
Q Consensus 16 W~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY 94 (590)
|..++...+. ..|....+...++.+++++|+|.+++.++.....++. ...++.|.+.||+|+|.++.++.++..+++
T Consensus 10 ~~l~~~~~~~--~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 10 SALLASSLLL--TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 4444433333 3444445566777899999999999999754444444 457999999999999999999999888887
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHH
Q 007766 95 GLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 95 ~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
.+..+ . + ++|.+.+...+.|.+.+...++.-....+-+| ++||++.|+.-....++.++-..+.
T Consensus 88 ~~~~~--~---~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~ 152 (395)
T PRK10054 88 IAIPL--V---N--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG 152 (395)
T ss_pred HHHHH--H---h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55332 2 1 24444333333343333333333333456665 4689999988888877766554333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-13 Score=146.25 Aligned_cols=357 Identities=14% Similarity=0.145 Sum_probs=203.4
Q ss_pred cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 33 YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 33 Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
-.=+.+-|++++.+|+|.+|..++.....+|.. .+++.|.+.||+|+|.++.+|.++..+|..+... ... +++++
T Consensus 43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~--~~~--a~~~~ 118 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP--AAE--IMNYT 118 (438)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--HHh--cCCHH
Confidence 345567899999999999999998777777775 4899999999999999999999999999866432 122 23467
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHhCCCCCC-chhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhh
Q 007766 112 VLCIAIFVGTNGETYFNTAALVSCVQNFPKSRG-PVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAF 190 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG-~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~ 190 (590)
.+.+..++.|.|.+..++++-....++.|++|+ ...++..+++++++.+=..+...+- ....|
T Consensus 119 ~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~---------~~~~~------- 182 (438)
T PRK10133 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI---------LSNVP------- 182 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCc-------
Confidence 777788888889888887777766676676655 4788888888887766543332210 00000
Q ss_pred heeeeeccCCccc--cCCC--CcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccc
Q 007766 191 MFIVRPIGGHRQV--RLSD--NTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFF 266 (590)
Q Consensus 191 ~~~ir~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 266 (590)
+....... .+++ ..+..+.. ..-..|.... .+..+++++. . +.
T Consensus 183 -----~~~~~~~~~l~~~~~~~w~~~~~~---~w~~~f~~~~-----------------~v~~~~~~~~-~-------~~ 229 (438)
T PRK10133 183 -----HQSQDVLDKMTPEQLSAYKHSLVL---SVQTPYMIIV-----------------AIVLLVALLI-M-------LT 229 (438)
T ss_pred -----ccchhhhhccChhhHHHHHHHHHH---HHHHHHHHHH-----------------HHHHHHHHHH-H-------Hh
Confidence 00000000 0000 00000000 0001111100 0000000000 0 00
Q ss_pred cCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCC
Q 007766 267 TEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPR 346 (590)
Q Consensus 267 ~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 346 (590)
+.| | .+ ++ + +++++ . . +.
T Consensus 230 ~~p-~---~~--~~----~----------------~~~~~-~--------------------------~---------~~ 247 (438)
T PRK10133 230 KFP-A---LQ--SD----N----------------HSDAK-Q--------------------------G---------SF 247 (438)
T ss_pred cCC-C---CC--cc----c----------------ccccc-c--------------------------c---------ch
Confidence 001 0 00 00 0 00000 0 0 00
Q ss_pred CCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhh
Q 007766 347 RGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVR 422 (590)
Q Consensus 347 ~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r 422 (590)
-.+.++++++|+||...+..++..+.-....+-.... .| ..|.++.. ...+.+.+...+||+..|+++||++|
T Consensus 248 ---~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~ 324 (438)
T PRK10133 248 ---SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_pred ---hhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 0123578899999987665544443211112222323 23 34666543 47789999999999999999999988
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHH
Q 007766 423 KFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI 502 (590)
Q Consensus 423 ~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i 502 (590)
++.. .....+.++.+++........-+...++.|++.|..+...-+...|.+|. +-++-=+++.... +|+.+
T Consensus 325 ~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~ 396 (438)
T PRK10133 325 HKVL------AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGI 396 (438)
T ss_pred HHHH------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhHHh-ccchH
Confidence 6532 22222323333222222211234567789999999999999999999864 5666666665444 45555
Q ss_pred hhHhHHHHHHhhhh
Q 007766 503 FSGVIASGIYDYYA 516 (590)
Q Consensus 503 ~~~~l~g~iyd~~~ 516 (590)
+ |.+.|.+.|..+
T Consensus 397 ~-~~i~G~l~~~~g 409 (438)
T PRK10133 397 V-TPVMGFVSDAAG 409 (438)
T ss_pred H-HHHHHHHHHhcc
Confidence 4 668999988644
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-13 Score=147.73 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=114.6
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceee-cchHHHH-HHhcCCcccc--hh-HHHHhhhhhccccccchhhhhhhccCCc
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQIC-QSLGYADTSI--YV-SMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i-~n~~~I~-~s~g~~~~~~--~V-sl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
+++.++++++|++.+..++.. .+.... +...+.. +..|.+.... .. .+..+...+|.+++|+++||++|++..
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~-~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l- 292 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYK-LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL- 292 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 356777788886655543322 222222 2233443 4567766543 33 244578889999999999999985421
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCch--hHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhH
Q 007766 428 RPVAMAVAQVVMAFALLYYAIGWPG--EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG 505 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~~~~~~--~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~ 505 (590)
....+...+..+.+.++....+. .+.....+..+++|..++.+.++..+....+.-++-||+......+|..+. +
T Consensus 293 --~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~-~ 369 (491)
T PRK11010 293 --MIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYV-G 369 (491)
T ss_pred --HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH-H
Confidence 11111112222222222222222 334455665666666666667777777777777888999988889998875 5
Q ss_pred hHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 506 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 506 ~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
.++|.++|..+ |+..|.+.+.+++++++++..+.
T Consensus 370 ~~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 370 PVAGWFVEAHG--------------------------------WPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999655 89999999999999888887653
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=139.18 Aligned_cols=156 Identities=10% Similarity=-0.031 Sum_probs=112.4
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcccc--hhHHHHhhhhhccccccchhhhhhhccCCchhH
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV 430 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~~--~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~ 430 (590)
.++.+|+++||.+.+..++..++-..+.+...+..++.|.++..+ ..++..+....+.+.+|.+.||+++++
T Consensus 198 ~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~------ 271 (382)
T TIGR00902 198 FIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD------ 271 (382)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH------
Confidence 568999999999988877766655556667777778888776543 455566666666666666666665533
Q ss_pred HHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHH-hhhhhHHHHhhHhHH
Q 007766 431 AMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGVIA 508 (590)
Q Consensus 431 ~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~-~a~~~g~~i~~~~l~ 508 (590)
.+.+..++..+...+.... ....++....+-|++||..+......+.+. -.++.++-.++.. ++.++|..+ ++.++
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~-g~~~~ 349 (382)
T TIGR00902 272 LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI-FTAFA 349 (382)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 2345555555554444432 335677788999999999999999999988 6677787788764 578888876 68899
Q ss_pred HHHHhhhh
Q 007766 509 SGIYDYYA 516 (590)
Q Consensus 509 g~iyd~~~ 516 (590)
|.+||+.+
T Consensus 350 G~l~~~~g 357 (382)
T TIGR00902 350 GFIYPTLG 357 (382)
T ss_pred HHHHHhcc
Confidence 99999765
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-13 Score=140.06 Aligned_cols=127 Identities=16% Similarity=0.051 Sum_probs=98.0
Q ss_pred ccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 007766 32 GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPL 110 (590)
Q Consensus 32 ~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~ 110 (590)
.+.|.-.-|++.+++|+|.+|.+.+..+..++.. ..++.|.+.||+|+|.++.+|.++..++..+.... .++
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~ 79 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTI 79 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccH
Confidence 3456667788889999999999997666666664 47999999999999999999999988887664432 235
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHH
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
+.+.+..++.|.+.+..+........++||+ +||++.|+...+.+++..+-..+.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 135 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG 135 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777778889985 699999999888888776655443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=140.43 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=116.9
Q ss_pred CHHHhhhcHHHHHHHHHHHhhhcccceee-cchHHHHHHhc----CCcc--cchhHHHHhhhhhccccccchhhhhhhcc
Q 007766 352 TLPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQICQSLG----YADT--SIYVSMISIWNFLGRVGGGYFSEAIVRKF 424 (590)
Q Consensus 352 t~~~~l~~~~Fwll~~~~~~~~g~Glm~i-~n~~~I~~s~g----~~~~--~~~Vsl~si~N~~GRl~~G~lSD~l~r~~ 424 (590)
+.+|.+|++++|.+.+..++... ..+.. +......++.. .+.. ....++..+.+..+.+..|.+.||++||+
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~ 285 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVAC-VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN 285 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 35789999999877555443221 11111 12223333321 1111 13556677889999999999999999865
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhH-HHhhhhhHHHH
Q 007766 425 AYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLI 502 (590)
Q Consensus 425 ~~~R~~~l~~~~~l~~~~~l~~~-~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~-~~~a~~~g~~i 502 (590)
.. .+...+..+...... ...+..+++...+-|++++......-..+.+.++.|.-++.++. ...+..+|+.+
T Consensus 286 ~l------~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~ 359 (396)
T TIGR00882 286 AL------LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF 359 (396)
T ss_pred hH------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH
Confidence 32 343444444433323 23344566777777887766655555667888888887777766 45678888886
Q ss_pred hhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 503 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 503 ~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
++.+.|.++|..+ |+.+|.+.+.+.++..+++..
T Consensus 360 -~~~l~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 360 -LSTLAGNMYDSIG--------------------------------FQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred -HHHhHHHHHHhcc--------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999765 899999999988887777654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-12 Score=155.20 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=112.1
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
++.+.+++.+|.+.+.+++....+.++...+..+.+. +|.+... ...+.+++...+|.+..|+++|+..++...+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~ 297 (1140)
T PRK06814 218 LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIG 297 (1140)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHH
Confidence 4567888999999888777666555555566666654 5665543 477889999999999999999877664433211
Q ss_pred HHHHHHHHHHHHHHHHH-----------------H-hcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhH
Q 007766 430 VAMAVAQVVMAFALLYY-----------------A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF 491 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~-----------------~-~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~ 491 (590)
. +...+..+...+. . ......++++.+++|++.|......++++.+.+..++.|+.+|+
T Consensus 298 ~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~ 374 (1140)
T PRK06814 298 A---LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAA 374 (1140)
T ss_pred H---HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHH
Confidence 1 1111111111110 0 02233567788889999999999999999999999999999999
Q ss_pred HHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 492 LTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 492 ~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
..+...+|..+ ++.+.|.++|..
T Consensus 375 ~~~~~~~~~~i-g~~~~g~l~~~~ 397 (1140)
T PRK06814 375 NNVLNAAFMVA-GTIILALLQALG 397 (1140)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhc
Confidence 99988888876 577888888643
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-12 Score=152.83 Aligned_cols=343 Identities=14% Similarity=0.034 Sum_probs=199.1
Q ss_pred ccccHHHHHHhCCChhh--HHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 007766 36 GSISPVIKAHMGYNQRQ--VSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWV 112 (590)
Q Consensus 36 Svys~~Lk~~l~~sq~~--~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~ 112 (590)
.+..+.+...++.+++. .+++..+..++. .+.+++|.+.||+|+|.+++++.++..++..+..++.. . .++|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~--~--~~~~~ 105 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY--L--GWFWL 105 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH--H--ccHHH
Confidence 44455566667776554 344544445554 45789999999999999998888765555544333221 1 23666
Q ss_pred HHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhhh
Q 007766 113 LCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAFM 191 (590)
Q Consensus 113 l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~~ 191 (590)
+++..++.|.+.+....+......+++| ++||.+.|+......++.++-..+...+ ..
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l---------------------~~ 164 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL---------------------FE 164 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 7777777888888888888888999997 5699999999888877765544333222 00
Q ss_pred eeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCC
Q 007766 192 FIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPP 271 (590)
Q Consensus 192 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 271 (590)
.+ .+ ... .+....+...... ... ..++.+++.. ..++
T Consensus 165 ~~---~~--~~~-~~~~~~~~~~~~~----~~~----------------------~~~~~~~~~~--------~~~~--- 201 (1146)
T PRK08633 165 SV---NG--NTP-SEILGRIAPAGLV----LLA----------------------VAVLGLIFAY--------RLPK--- 201 (1146)
T ss_pred hh---cc--ccc-cccccchHHHHHH----HHH----------------------HHHHHHHHHh--------cCcC---
Confidence 00 00 000 0001111110000 000 0000000000 0000
Q ss_pred CCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 007766 272 PVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDF 351 (590)
Q Consensus 272 ~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~ 351 (590)
.| +.. .+ .++ +... . ..+ + ...
T Consensus 202 ---~~--~~~--~~---------------~~~-~~~~---~-------~~~-------------~------------~~~ 223 (1146)
T PRK08633 202 ---VP--AAA--PE---------------VFD-KKKY---L-------FPK-------------L------------LWR 223 (1146)
T ss_pred ---CC--CCC--cc---------------ccc-cccc---c-------cHH-------------H------------HHH
Confidence 00 000 00 000 0000 0 000 0 001
Q ss_pred CHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCcc-c--chhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 352 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADT-S--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 352 t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~-~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
.++++++++.+|.+.+.+++......++...+....+ .+|.+.. . ...++..+...+|.+++|+++||.+++..+
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~- 302 (1146)
T PRK08633 224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV- 302 (1146)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch-
Confidence 2456788899998877766665555555555555554 4576655 2 366777888889999999999998775432
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHh
Q 007766 428 RPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 506 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~ 506 (590)
.+..++++++.+++.. .....+.+..+++|+++|..+....+++.+.+..++-|+.+|+..+...+|..+ ++.
T Consensus 303 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~ 376 (1146)
T PRK08633 303 -----PLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLA 376 (1146)
T ss_pred -----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHH
Confidence 2333333444333332 223456777888999999999999999999999999999999988888887754 454
Q ss_pred HHHHH
Q 007766 507 IASGI 511 (590)
Q Consensus 507 l~g~i 511 (590)
+.+.+
T Consensus 377 ~~~~l 381 (1146)
T PRK08633 377 LTTLF 381 (1146)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-12 Score=137.46 Aligned_cols=131 Identities=8% Similarity=-0.001 Sum_probs=88.1
Q ss_pred cCcccccccccHH--HHHHhCCChhhHHHHHHHHHHhhhccCccceeeecc-----chHH-HHHHHHHHHHHHHHHHHHH
Q 007766 29 AGIGYLFGSISPV--IKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFVEIL-----PVWS-INLIGVLQNFVGYGLVWLI 100 (590)
Q Consensus 29 ~Gt~Y~fSvys~~--Lk~~l~~sq~~~~~is~a~~~G~~~gi~~G~~~D~~-----gpr~-~~~iG~~l~~~GY~~~~l~ 100 (590)
-|.+|.|..-+-| |+ +.|+|.+|+.++...... -.+.++.|.+.||+ |.|. .+.++.++..++..++.+
T Consensus 11 ~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~- 87 (402)
T PRK11902 11 SGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF- 87 (402)
T ss_pred HhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh-
Confidence 3444444443333 44 459999999998655554 35789999999999 6554 577767766666554332
Q ss_pred HhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCC-CCchhhhhHhhhhhhHHHHHHHH
Q 007766 101 VTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 101 ~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~-RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
... ..++|.+....++.+...+..+.+.-....+++|++ ||.+.++...+++++..+-..+.
T Consensus 88 -~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 88 -CPP--HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred -cCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 211 224666655555555566667777778889999865 99999999988888866655433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-11 Score=130.40 Aligned_cols=157 Identities=11% Similarity=-0.006 Sum_probs=101.4
Q ss_pred CHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 352 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 352 t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
++++.+|++.||.+.+..++....-..+.+......++.|.++.. ...++..+.+..+++..|.+.||.++++.
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~---- 272 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL---- 272 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----
Confidence 467899999999877665554333222334445555667776543 34556666777777777777777766442
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHH-hhhhhHHHHhhHhH
Q 007766 430 VAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGVI 507 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~-~a~~~g~~i~~~~l 507 (590)
+.+...+..++.+++.. ..+..+++..++.|+++|......-..+.+.- ..+.++.+++.. .+..+|..+ +|.+
T Consensus 273 --l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~i-g~~i 348 (382)
T PRK11128 273 --LLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAI-MTVL 348 (382)
T ss_pred --HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34444555554443332 23456777888889998876666666666653 455677788775 556667665 7899
Q ss_pred HHHHHhhhh
Q 007766 508 ASGIYDYYA 516 (590)
Q Consensus 508 ~g~iyd~~~ 516 (590)
+|.++|..+
T Consensus 349 ~G~l~~~~g 357 (382)
T PRK11128 349 SGFLYQHLG 357 (382)
T ss_pred HHHHHHhcc
Confidence 999999765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-12 Score=134.31 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=104.2
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HHH-hcCCcc-cchhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQS-LGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s-~g~~~~-~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
+++++++++||.+.+..++....- ...+..... .+. ++.+.. ....++..+...++.+++|+++||++||+.+
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~--- 290 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAF-NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF--- 290 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---
Confidence 467889999998877655543321 111221111 111 121111 1245566888999999999999999986532
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHhhhhccchhhHHHHHHh-------hcccchhhhhhHHHhhhhhHH
Q 007766 430 VAMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASEL-------FGLKSFGALYNFLTLASPAGS 500 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~-------FG~k~~g~nyG~~~~a~~~g~ 500 (590)
.....+.+++++++... ....+++..++.|+.+|..+.+..++++|. .|.++-|+-+|+..+..-+|.
T Consensus 291 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~ 367 (437)
T TIGR00792 291 ---AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ 367 (437)
T ss_pred ---HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence 33344444444433322 223456677888999999999999999887 467888999999999889988
Q ss_pred HHhhHhHHHHHHhhhh
Q 007766 501 LIFSGVIASGIYDYYA 516 (590)
Q Consensus 501 ~i~~~~l~g~iyd~~~ 516 (590)
.+ ++.+.|.+.|..+
T Consensus 368 ~l-g~~i~g~ll~~~G 382 (437)
T TIGR00792 368 AL-AGFLVGLILGIIG 382 (437)
T ss_pred HH-HHHHHHHHHHHcC
Confidence 76 6889999998755
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-12 Score=132.93 Aligned_cols=122 Identities=10% Similarity=-0.056 Sum_probs=83.2
Q ss_pred ccHHHHHHhCCChhhHHHHHHHHHHhhhccCccceeeecc-----chHHHH-HHHHHHHHHHHHHHHHHHhcCC-CCchH
Q 007766 38 ISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFVEIL-----PVWSIN-LIGVLQNFVGYGLVWLIVTNRL-PSLPL 110 (590)
Q Consensus 38 ys~~Lk~~l~~sq~~~~~is~a~~~G~~~gi~~G~~~D~~-----gpr~~~-~iG~~l~~~GY~~~~l~~~g~i-~s~~~ 110 (590)
=-|.+.+++|+|.+|+..++....... ..++.|.+.||+ |.|... +++.++..+....+ ... +..++
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l-----~~~~~~~~l 83 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL-----SFLVPSTDL 83 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH-----HcCCcchhH
Confidence 346678889999999999865543333 488999999998 777764 45555544443222 122 12345
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHH
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
|.+....++.+.+.+..+.+.-....+++| ++||.+.|+...++.++..+-..+.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLA 139 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666667777777889996 6799999999988888876665444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.2e-12 Score=137.44 Aligned_cols=367 Identities=14% Similarity=0.145 Sum_probs=229.0
Q ss_pred HHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 007766 43 KAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGT 121 (590)
Q Consensus 43 k~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G 121 (590)
+.+++||.+|-+++=.+...|... -+++|.++||+|+|.++..++++..++-.++=++.. ..+|.+++.=++-|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----IGFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHhH
Confidence 568999999999998888899876 467799999999999999999999888777555433 12344566778888
Q ss_pred cCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhhheeeeeccCC
Q 007766 122 NGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAFMFIVRPIGGH 200 (590)
Q Consensus 122 ~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~ 200 (590)
.+.+..+++.-.-..||+| ++|++..+++.++.-+|..+--++...+
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~l-------------------------------- 187 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLL-------------------------------- 187 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------------------------
Confidence 9999999999999999997 7899999999999988887776665443
Q ss_pred ccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCCCCccccccc
Q 007766 201 RQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAE 280 (590)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~ 280 (590)
.+ .+.+....+ |... ...++..++.+. + +.++|. ++|...
T Consensus 188 -c~-s~~GW~sif----------Y~~g----------------~~g~i~~~~w~~-~-------~~d~P~---~h~~is- 227 (466)
T KOG2532|consen 188 -CE-SSLGWPSIF----------YVFG----------------IVGLIWFILWFL-F-------YSDSPS---KHPNIS- 227 (466)
T ss_pred -hc-cCCCCchHH----------HHHH----------------HHHHHHHHHHHH-H-------hcCCcc---cCCCCC-
Confidence 00 001111111 1111 000111111111 0 111110 011000
Q ss_pred cccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcH
Q 007766 281 TNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKA 360 (590)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~ 360 (590)
++| .+.+++ +.. ++...+..+..++++++++
T Consensus 228 ---------------------------------~~E-l~~I~~-----------~k~----~~~~~~~~~vP~~~i~ts~ 258 (466)
T KOG2532|consen 228 ---------------------------------EKE-LKYIEK-----------GKS----EAHVKKKPPVPYKAILTSP 258 (466)
T ss_pred ---------------------------------HHH-HHHHHh-----------ccc----ccccCCCCCCCHHHHHcCH
Confidence 000 001111 100 0001111467899999999
Q ss_pred HHHHHHHHHHhhhcccceeecchH-HHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCc----hhHHHH
Q 007766 361 DFLLLFFSLVLASGSGLTVIDNLG-QICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP----RPVAMA 433 (590)
Q Consensus 361 ~Fwll~~~~~~~~g~Glm~i~n~~-~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~----R~~~l~ 433 (590)
.+|.+|+..++..-.=.+++..+- .+=+-++.+-.+ ...++=-+....-++++|.++||+.+| .++ |-.+-.
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHh
Confidence 999999986664432222222222 222335655433 467788888999999999999999885 332 444445
Q ss_pred HHHHHHHHHHHHHHhcC---c----hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHh
Q 007766 434 VAQVVMAFALLYYAIGW---P----GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 506 (590)
Q Consensus 434 ~~~~l~~~~~l~~~~~~---~----~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~ 506 (590)
+++...++.++.+.... . ..+.++..+.|++.+|..-.. ..--++|-+...|+......+++++ +|.
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~-----~~~apq~a~~l~g~~~~~~~~~~~~-~P~ 411 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNH-----QDIAPQHAGFVMGIINFVGALAGFI-APL 411 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhh-----hhccchHHHHHHHHHHHHHHHHHHH-HHH
Confidence 55555555544433322 1 134444455555555543322 1116889999999999999999886 799
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 507 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 507 l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
+.|.+-. +..++ -.+..|.+.+++++++.+.-.+..
T Consensus 412 ~vg~~~~-~~t~~----------------------------eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 412 LVGIIVT-DNTRE----------------------------EWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred heeeEeC-CCCHH----------------------------HHHHHHHHHHHHHHHhchheeEee
Confidence 9988873 11111 289999999999999886555554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-10 Score=120.20 Aligned_cols=371 Identities=16% Similarity=0.174 Sum_probs=241.6
Q ss_pred cchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHH-HHHHHHHhhhccCccceeeeccchHHHHHHHHHHH
Q 007766 13 NNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSL-LGVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQN 90 (590)
Q Consensus 13 ~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~-is~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~ 90 (590)
++.|..+.+=.+...+.||. +.-+--=|++.+.+|.|.++... ++...-.....+++-..+.||+.+|.+++..-+++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34455555555566667776 77778889999999999999998 46665555566899999999999888887777777
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhc
Q 007766 91 FVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMIS 169 (590)
Q Consensus 91 ~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~ 169 (590)
.+|=.+..+ +++++.+.+.=++.|...+.+..-+...++|==| +|||.+.|++..+.-++-.+=.++...+
T Consensus 89 i~~n~l~al-------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i- 160 (394)
T COG2814 89 IVSNLLSAL-------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL- 160 (394)
T ss_pred HHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH-
Confidence 777655333 3568888888888888877777777777777775 6899999999988877765554444332
Q ss_pred CChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Q 007766 170 ANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGL 249 (590)
Q Consensus 170 ~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~ 249 (590)
.+ .-+.+..|. ++. .++++.
T Consensus 161 --------------------------------g~--~~GWR~~F~-----------~ia---------------~l~ll~ 180 (394)
T COG2814 161 --------------------------------GQ--LFGWRATFL-----------AIA---------------VLALLA 180 (394)
T ss_pred --------------------------------HH--HhhHHHHHH-----------HHH---------------HHHHHH
Confidence 00 111121221 110 001111
Q ss_pred HHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 007766 250 IIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLF 329 (590)
Q Consensus 250 ~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (590)
.+.+.. .-| |+. .+++.+
T Consensus 181 ~~~~~~-----------~lP---------~~~-------------------~~~~~~----------------------- 198 (394)
T COG2814 181 LLLLWK-----------LLP---------PSE-------------------ISGSLP----------------------- 198 (394)
T ss_pred HHHHHH-----------hCC---------Ccc-------------------CCCCCC-----------------------
Confidence 111111 001 010 000000
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHh-cCCccc--chhHHHHhhh
Q 007766 330 QAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTS--IYVSMISIWN 406 (590)
Q Consensus 330 ~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~-g~~~~~--~~Vsl~si~N 406 (590)
.+-.+..+.+|+|+-|..+++.++..+.--+...=++++.++. |.+... ...-++++..
T Consensus 199 ------------------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~ 260 (394)
T COG2814 199 ------------------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAG 260 (394)
T ss_pred ------------------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHH
Confidence 0011235789999999999999999999888889999999876 555443 3556799999
Q ss_pred hhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHhhhhccchhhHHHHHHhhcccc
Q 007766 407 FLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS 484 (590)
Q Consensus 407 ~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~--~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~ 484 (590)
.+|-++.|.++|| +.++. +.....++++.++.+.... +........+.|+..+........-.++ .-+++
T Consensus 261 ~~Gn~~gGrl~dr-~~~~~------l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~ 332 (394)
T COG2814 261 FIGNLLGGRLADR-GPRRA------LIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA 332 (394)
T ss_pred HHHHHHHhhhccc-cchhH------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc
Confidence 9999999999999 44332 2334344444443333222 3344455555677776666666667777 55666
Q ss_pred hhhh----hhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHH
Q 007766 485 FGAL----YNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLC 560 (590)
Q Consensus 485 ~g~n----yG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~ 560 (590)
-+.- -..++++.++|+. +.|.++|+.+ |+.+..+.+.+.
T Consensus 333 ~~~a~sl~~aa~nlgia~GA~-----lGG~v~~~~g--------------------------------~~~~~~~~a~l~ 375 (394)
T COG2814 333 ADLAGSLNVAAFNLGIALGAA-----LGGLVLDALG--------------------------------YAATGWVGAALL 375 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhc--------------------------------hHHHHHHHHHHH
Confidence 5444 4444555555554 5678889844 999999999999
Q ss_pred HHHHHHHHHhhhhhhH
Q 007766 561 IIAMVMSLIVVHRTKS 576 (590)
Q Consensus 561 ~~a~vls~~l~~r~r~ 576 (590)
++++++.++..++.|+
T Consensus 376 ~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 376 LLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999998876655554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-10 Score=121.07 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=86.6
Q ss_pred cccccccHHHHHHhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 33 YLFGSISPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 33 Y~fSvys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
..+.---|++.+.+|.|+++.++. ++..-.+....++.|.+.||+|+|.++.+|.++..++..+.. .. .+++
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~a--~~~~ 105 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL-----FT--TSMT 105 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH-----Hc--CCHH
Confidence 444444456788999999999985 544433334578999999999999999999887776654422 22 2456
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHH
Q 007766 112 VLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILT 162 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s 162 (590)
.+.+.-++.|.+.++..+........+||+ +|+++.|+......++..+-.
T Consensus 106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 157 (413)
T PRK15403 106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGP 157 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666776777666555555666678986 578888988888877765543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-10 Score=119.70 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=119.0
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcccc--hhHHHH-hhhhhccccccchhhhhhhccCCchh
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~~--~Vsl~s-i~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
.++.+|++.+|.+....++...+-..+.+-..+..++.|++.+.+ ..++.. +...+|.+..|++.||+++++..
T Consensus 201 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l--- 277 (390)
T TIGR02718 201 LFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF--- 277 (390)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence 467888899887776655544433333344456667788876653 344444 46778899999999999986532
Q ss_pred HHHHHHHHHHHHH-HHHHH--h----cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcc-cchhhhhhHHHhhhhhHHH
Q 007766 430 VAMAVAQVVMAFA-LLYYA--I----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSL 501 (590)
Q Consensus 430 ~~l~~~~~l~~~~-~l~~~--~----~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~-k~~g~nyG~~~~a~~~g~~ 501 (590)
....++..+. .+.+. . ..+..++....+.+++.|..+..+.+.+.+..+. ++.|+.+++......+|..
T Consensus 278 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~ 354 (390)
T TIGR02718 278 ---ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL 354 (390)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence 2222222111 11111 1 1112334444555778898888888888888887 8889999999999999998
Q ss_pred HhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 007766 502 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS 567 (590)
Q Consensus 502 i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls 567 (590)
+ +|.++|.+||..+ |+..|.+.+++++++.++.
T Consensus 355 ~-g~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 355 I-ASSIAGYLTDRFG--------------------------------YAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred H-HHHHHHHHHHHHc--------------------------------cHHHHHHHHHHHHHHHHHh
Confidence 7 6889999999765 8888998887777765543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-09 Score=117.32 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=98.6
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc---chhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS---IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~---~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
.++++|++.||.+.+.+++.... ....+.+............+ .......+...++-+++++++||++||+.+
T Consensus 222 ~~~~~~n~~~~~l~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~--- 297 (444)
T PRK09669 222 LKLLLGNSQWRIMFIFNVVLLTA-VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF--- 297 (444)
T ss_pred HHHHhCCchHHHHHHHHHHHHHH-HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH---
Confidence 35788999999987765543221 11112222111111111111 122334466778889999999999886533
Q ss_pred HHHHHHHHHHHH-HHHHHHh--cCchhHHHHHHHHHhhhhccchhhHHHHHHhh-------cccchhhhhhHHHhhhhhH
Q 007766 430 VAMAVAQVVMAF-ALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAG 499 (590)
Q Consensus 430 ~~l~~~~~l~~~-~~l~~~~--~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~F-------G~k~~g~nyG~~~~a~~~g 499 (590)
.+..++.++ +..+... .....+++..++.|+++|+...+.+++++|.. |.+.-|..|++.....-+|
T Consensus 298 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg 374 (444)
T PRK09669 298 ---KWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG 374 (444)
T ss_pred ---HHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence 222222221 2212222 22335777888999999999999999999987 7888888999988888888
Q ss_pred HHHhhHhHHHHHHhhhh
Q 007766 500 SLIFSGVIASGIYDYYA 516 (590)
Q Consensus 500 ~~i~~~~l~g~iyd~~~ 516 (590)
..+ ++.+.|.++|..+
T Consensus 375 ~al-g~~i~g~ll~~~G 390 (444)
T PRK09669 375 LAI-GGAVVGWILAWVD 390 (444)
T ss_pred HHH-HHHHHHHHHHHcC
Confidence 775 6888888888665
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-09 Score=114.97 Aligned_cols=134 Identities=14% Similarity=0.125 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHH
Q 007766 16 WLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGY 94 (590)
Q Consensus 16 W~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY 94 (590)
...+..+..+.......+.+ ..+++.+++|.++.++.++..+..++. .+++++|.+.||+|+|.++.++.++..++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLF--AAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHH
Confidence 33455555555544444433 335667889999998888755555555 468999999999999999999998877765
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHH
Q 007766 95 GLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAIL 161 (590)
Q Consensus 95 ~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~ 161 (590)
...... .+ . .+.-++.|.+.+..+.+......+++| ++|+++.|+.-....++..+=
T Consensus 83 ~~~~~~-----~~--~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~G 140 (393)
T PRK11195 83 LLMLFG-----IH--P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLG 140 (393)
T ss_pred HHHHHH-----HH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 443221 11 1 223356688888899999999999998 579999999876655554333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-08 Score=110.46 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHHhcCcccccccc-cHHHHHHhCCChhhHHHH-HHHHHHhhhccCccceeeec-cchHHHHHHHHHHH
Q 007766 14 NRWLVFVCSMWIQSCAGIGYLFGSI-SPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEI-LPVWSINLIGVLQN 90 (590)
Q Consensus 14 ~RW~~l~as~~i~l~~Gt~Y~fSvy-s~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~-~gpr~~~~iG~~l~ 90 (590)
+-|..++...+... ..|.+..+ ...+.+.+|+|+++...+ +....+.....+++|++.|| +|+|.++.+|.++.
T Consensus 22 ~~~~~~~~~~~~~~---~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~ 98 (500)
T PRK09584 22 AFYLIFSIELWERF---GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL 98 (500)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 33444444444333 33444444 344678999999988775 33332322335689999999 59999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCC---CCchhhhhHhhhhhhHHHHHHHHHH
Q 007766 91 FVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKS---RGPVVGILKGFAGLSGAILTQIYIM 167 (590)
Q Consensus 91 ~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~---RG~a~Gi~~a~~GLSa~i~s~i~~~ 167 (590)
.+|+.++.+. . . ..+.+.+..++.|.|.+...........++||++ |+.+.++.-.+..+++++-..+...
T Consensus 99 ~ig~~l~~~~--~---~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 99 AIGYALVAWS--G---H-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHHHHHHHHh--c---c-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 9998665432 1 1 1233444455566677766666667788999854 3446666666777777655555544
Q ss_pred h-cCChhhHHHHHHHhhHHHHHhhh
Q 007766 168 I-SANETSLIFLVAVGPSIVVMAFM 191 (590)
Q Consensus 168 ~-~~~~~~fllfla~~~~~v~l~~~ 191 (590)
+ +.......+.+......++++..
T Consensus 173 l~~~~g~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 173 LAAKYGWSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 4 32223334444443334433333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-08 Score=110.33 Aligned_cols=386 Identities=15% Similarity=0.128 Sum_probs=211.9
Q ss_pred cHHHHHHhC--CChhhHHHH----HHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 39 SPVIKAHMG--YNQRQVSLL----GVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 39 s~~Lk~~l~--~sq~~~~~i----s~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
.+.+.+++| .+.++++++ ..+-.+|..+ .+.+|.+.|++|+|.++++..++..++-.++.++ ... .++.
T Consensus 42 n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s--~~~--~~~e 117 (485)
T KOG0569|consen 42 NETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS--KSA--PSFE 117 (485)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--HHh--hhHH
Confidence 344566788 555556663 3344455544 4688999999999999999999887776665554 222 2456
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHhCCCC-CCchhhhhHhhhhhhHHHHHHHH-HHh--cCChhhHHHHHHHhhHHHH
Q 007766 112 VLCIAIFVGTNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLSGAILTQIY-IMI--SANETSLIFLVAVGPSIVV 187 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~taal~t~~knFP~~-RG~a~Gi~~a~~GLSa~i~s~i~-~~~--~~~~~~fllfla~~~~~v~ 187 (590)
++.+.=++.|..++........--..-=|++ ||.+.-+.--++.++-.+-.++. ..+ ..|.+.++++....|.++.
T Consensus 118 ~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~ 197 (485)
T KOG0569|consen 118 MLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ 197 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH
Confidence 6666677777777766544444444455875 99888777666666654443332 222 4455667776666666655
Q ss_pred HhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceeccccc
Q 007766 188 MAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFT 267 (590)
Q Consensus 188 l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 267 (590)
++..+++-
T Consensus 198 l~~l~~~P------------------------------------------------------------------------ 205 (485)
T KOG0569|consen 198 LALLPFLP------------------------------------------------------------------------ 205 (485)
T ss_pred HHHHhcCC------------------------------------------------------------------------
Confidence 44444331
Q ss_pred CCCCCCccc--cccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 007766 268 EPPPPVEET--LLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGP 345 (590)
Q Consensus 268 ~~~~~~~~p--ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 345 (590)
|+| |+.+. +++||+..+..-...+++.+ .+..+..+|.+ |. + .
T Consensus 206 ------ESPk~Ll~~k------~~~~~A~~sl~~y~G~~~~~-------~~~e~~~~e~~--------~~----~----~ 250 (485)
T KOG0569|consen 206 ------ESPKYLLIKK------GDEEEARKALKFYRGKEDVE-------AEIEEMLREIE--------EE----E----L 250 (485)
T ss_pred ------CCcchHHHHc------CCHHHHHHHHHHHhCCCcch-------hHHHHHHHHHH--------Hh----c----c
Confidence 111 11100 00111111110000000000 00000011100 00 0 1
Q ss_pred CCCCCCCHHHhhhcHH----HHHHHHHHHhhhcccceeecc-hHHHHHHhcCCcccc--hhHHHHhhhhhccccccchhh
Q 007766 346 RRGEDFTLPQALMKAD----FLLLFFSLVLASGSGLTVIDN-LGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSE 418 (590)
Q Consensus 346 ~~~~d~t~~~~l~~~~----Fwll~~~~~~~~g~Glm~i~n-~~~I~~s~g~~~~~~--~Vsl~si~N~~GRl~~G~lSD 418 (590)
++..+.+++|++++++ .++...+.++-..+|...++. .-.|-++.|.+.... .=..+++.|....+++.++-|
T Consensus 251 ~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid 330 (485)
T KOG0569|consen 251 EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID 330 (485)
T ss_pred ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124678889988743 445566677777888887765 444667788876543 444688899999999999999
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHHHh------cC-ch---hHHHHHHHHHhhhhccchhh-HHHHHHhhcccchhh
Q 007766 419 AIVRKFAYPRPVAMAVAQVVMAFALLYYAI------GW-PG---EIYVTTVLVGLSYGAHWAIV-PAAASELFGLKSFGA 487 (590)
Q Consensus 419 ~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~------~~-~~---~l~~~~~liG~~yG~~~~l~-P~i~ad~FG~k~~g~ 487 (590)
|+|||. .. .....++.+..+++.. .. +. ....+..+..+.|+...+-. .-+++|+|..++=++
T Consensus 331 ~~gRRp-----Ll-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~a 404 (485)
T KOG0569|consen 331 RLGRRP-----LL-LISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSA 404 (485)
T ss_pred hcCCcH-----HH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHH
Confidence 999844 33 3333333333222211 11 11 12334444444555443333 357899999988777
Q ss_pred hhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 007766 488 LYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS 567 (590)
Q Consensus 488 nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls 567 (590)
-..+.....-+..++. ...+=.+++.-+ ...|++-.+.|++..+..
T Consensus 405 a~s~~~~~~w~~~fiv-~~~fp~l~~~~g---------------------------------~~~filF~i~~~~~~i~~ 450 (485)
T KOG0569|consen 405 AQSVATAVNWLSNFIV-GFAFPPLQNVIG---------------------------------PYVFILFVIPLAIFLIYL 450 (485)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhc---------------------------------chhhHHHHHHHHHHHHHH
Confidence 7666655555555442 223323443322 145777777777766666
Q ss_pred HHhhhhhh
Q 007766 568 LIVVHRTK 575 (590)
Q Consensus 568 ~~l~~r~r 575 (590)
+...=-||
T Consensus 451 ~~~lPETk 458 (485)
T KOG0569|consen 451 YRYLPETK 458 (485)
T ss_pred HHhCcccC
Confidence 65544455
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-07 Score=104.63 Aligned_cols=124 Identities=11% Similarity=0.053 Sum_probs=90.4
Q ss_pred ccHHHHHH--hCCChhhHHHH-HHHHHHhhhccCccceeeec-cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 007766 38 ISPVIKAH--MGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEI-LPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVL 113 (590)
Q Consensus 38 ys~~Lk~~--l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~-~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l 113 (590)
...-+.++ +|+++++...+ +.....+....+++|++.|| +|+|.++.+|.++..+|+.++.+. + +++.+
T Consensus 33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----~--~~~~~ 105 (475)
T TIGR00924 33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----I--YPDLI 105 (475)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----c--cHhHH
Confidence 34446666 99999999996 44444444557899999999 899999999999999998764431 1 23445
Q ss_pred HHHHHHhhcCccccchhhHHHHHHhCCC----CCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 114 CIAIFVGTNGETYFNTAALVSCVQNFPK----SRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 114 ~~~~~l~G~g~~~~~taal~t~~knFP~----~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
.+..++.|.|.+....+......++||+ +|+.+.++.-....+++++=..+...+
T Consensus 106 ~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 106 FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence 5555566777777777777777899974 388888888777777776665555544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-09 Score=115.46 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=95.8
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCcccc-hhHH-HHhhhhhccccccchhhhhhhccCCchh
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSM-ISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~~-~Vsl-~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
+++++|++.|+.+.++.++....-...........+. +|.++... ...+ ..+...++-.++|.++||+++++.+
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~--- 297 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF--- 297 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---
Confidence 4678999999988776655433222222111112222 23322211 1111 2344566777888888888765422
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---chhHHHHHHHHHhhhhccchhhHHHHHHhh-------cccchhhhhhHHHhhhhhH
Q 007766 430 VAMAVAQVVMAFALLYYAIGW---PGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAG 499 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~~~---~~~l~~~~~liG~~yG~~~~l~P~i~ad~F-------G~k~~g~nyG~~~~a~~~g 499 (590)
.+...+.+++++++.... ...+++...+.|++.|..+....++++|.= |.|+-|..+|+..+..-+|
T Consensus 298 ---~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 298 ---LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred ---HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 334445555544433322 224556677788888988888888887753 6677899999999888888
Q ss_pred HHHhhHhHHHHHHhhhh
Q 007766 500 SLIFSGVIASGIYDYYA 516 (590)
Q Consensus 500 ~~i~~~~l~g~iyd~~~ 516 (590)
..+ ++.+.|.+.+..+
T Consensus 375 ~ai-g~~i~g~~l~~~G 390 (448)
T PRK09848 375 QAI-GGSIPAFILGLSG 390 (448)
T ss_pred HHH-HHHHHHHHHHHcC
Confidence 876 6778888877544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-08 Score=106.25 Aligned_cols=346 Identities=16% Similarity=0.161 Sum_probs=217.1
Q ss_pred cccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 007766 37 SISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCI 115 (590)
Q Consensus 37 vys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~ 115 (590)
+--|++|+.+++|+.|.+++-++.-.|=. .++++|++.+|+|-|..+++|-.+..+|..+.|-+-..+ .+-..+.
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~----~y~~FL~ 109 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK----SYGFFLV 109 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHH
Confidence 45699999999999999998766555543 489999999999999999999999999998877543322 2323344
Q ss_pred HHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHh--cCChhhHHHHHHHhhHHHHHhhhe
Q 007766 116 AIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMI--SANETSLIFLVAVGPSIVVMAFMF 192 (590)
Q Consensus 116 ~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~--~~~~~~fllfla~~~~~v~l~~~~ 192 (590)
..++-|.|.+.-.|++-+-.....|. +.-.=..+.-+++||++.+.-.+.+.+ ++-
T Consensus 110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~--------------------- 168 (422)
T COG0738 110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV--------------------- 168 (422)
T ss_pred HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh---------------------
Confidence 56777899999999999999999976 445556799999999999988777665 110
Q ss_pred eeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCCC
Q 007766 193 IVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPP 272 (590)
Q Consensus 193 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 272 (590)
. .... +++.. ... ..... ..+ ..+...+...+++..-. ...+
T Consensus 169 ----~-~~~~--~~~~~--~~~----------~~~~~-------~v~-~pYl~~~~~lvll~v~~------~~~k----- 210 (422)
T COG0738 169 ----A-LTMS--AAQIL--AIK----------GADAS-------SVQ-FPYLILAGLLVLLAVLI------LLSK----- 210 (422)
T ss_pred ----h-hccC--HHHHH--HHH----------HHHHH-------hhh-hHHHHHHHHHHHHHHHH------Hhcc-----
Confidence 0 0000 00000 000 00000 000 00111111111111100 0011
Q ss_pred CccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCC
Q 007766 273 VEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFT 352 (590)
Q Consensus 273 ~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t 352 (590)
.| +. .++ +++ . .+ + .+..
T Consensus 211 --~p---~~-------------------~~~-~~~----------------------------~--~~----~---~~~~ 228 (422)
T COG0738 211 --LP---DL-------------------QVA-APS----------------------------L--GA----S---GSAG 228 (422)
T ss_pred --CC---cC-------------------Ccc-ccc----------------------------c--cc----c---ccch
Confidence 11 10 000 000 0 00 0 1226
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
..+++|++++|+--+..++=.|.-.++=+-+-+...+ .|.+..+ .++|.+=.+-.+||+++-++-.|+..++-
T Consensus 229 ~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~---- 304 (422)
T COG0738 229 LSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKY---- 304 (422)
T ss_pred HHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH----
Confidence 6789999999999999999999888888888888877 5655443 48888888899999555544447754331
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHH
Q 007766 430 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS 509 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g 509 (590)
. .+..+..++-++.........-..+..++|+-.+.+|...=++..+..| +|=+.-=+++.++ .+|+.+. |.+.|
T Consensus 305 -L-af~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~ma-ivGGAii-P~l~G 379 (422)
T COG0738 305 -L-AFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMA-IVGGAII-PPLQG 379 (422)
T ss_pred -H-HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeh-eecchHH-HHHHH
Confidence 1 2222111111222222222345566677899999999888888999998 6655555555555 5566554 88999
Q ss_pred HHHhhhh
Q 007766 510 GIYDYYA 516 (590)
Q Consensus 510 ~iyd~~~ 516 (590)
.+-|..+
T Consensus 380 ~i~d~~g 386 (422)
T COG0738 380 VIADMFG 386 (422)
T ss_pred HHHHhhh
Confidence 9999877
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-07 Score=100.27 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=89.8
Q ss_pred ccHHHHHHhCCChhhHHHH-HHHHHHhhhccCccceeeec-cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 007766 38 ISPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEI-LPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCI 115 (590)
Q Consensus 38 ys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~-~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~ 115 (590)
...-+++.+|+++++.+++ +....+.....+++|++.|| +|+|.++.+|.++..+|+.+..+. . +.+ ..+.+
T Consensus 37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~---~~~-~ll~~ 110 (489)
T PRK10207 37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--L---LKP-DLIFI 110 (489)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--c---cch-hHHHH
Confidence 3344678899999999885 55544555567899999999 999999999999999999775542 1 111 22334
Q ss_pred HHHHhhcCccccchhhHHHHHHhCCCC---CCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 116 AIFVGTNGETYFNTAALVSCVQNFPKS---RGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 116 ~~~l~G~g~~~~~taal~t~~knFP~~---RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
..++.|.|.+...........+.||++ |+.+-++.-....+++++-..+...+
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 555667788877777778888999753 46677777777778776554444444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-08 Score=108.52 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=111.6
Q ss_pred CHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCcc-cchhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 352 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 352 t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~-~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
.+++.+++++|+.++.++++....-.+..+..-...+. ++.++. .....+..+...++-+++++++||++||+.+
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~--- 293 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY--- 293 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh---
Confidence 35788999999999888887644433333333344443 344432 2456678888999999999999999998854
Q ss_pred HHHHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHhhhhccchhhHHHHHHhh-------cccchhhhhhHHHhhhhhH
Q 007766 430 VAMAVAQVVMAFALLYYA-I--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAG 499 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~-~--~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~F-------G~k~~g~nyG~~~~a~~~g 499 (590)
....++.+++.+++. . .....+++..++.|+++|..+.+.+++++|.- |.++-|..+++.....-+|
T Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 294 ---IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 444444444443332 2 34568999999999999999999999999876 4677888899888777776
Q ss_pred HHHhhHhHHHHHHhhhh
Q 007766 500 SLIFSGVIASGIYDYYA 516 (590)
Q Consensus 500 ~~i~~~~l~g~iyd~~~ 516 (590)
.-+ ++.+.|.+-+..+
T Consensus 371 ~~l-a~~i~g~~l~~~G 386 (428)
T PF13347_consen 371 QGL-AGAIVGLLLALVG 386 (428)
T ss_pred HHH-HHHHHHHHHHHhC
Confidence 665 4556666665544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.9e-09 Score=111.38 Aligned_cols=148 Identities=14% Similarity=0.215 Sum_probs=104.3
Q ss_pred hcccchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLIGV 87 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~ 87 (590)
|+.++||++|++..+.+.+.|-. -.|+.-+.....-|+ +.+...++ -+..-+..-+|+++=++.||+|-|.++++|+
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 78999999999999999998876 456666666777788 54545555 4444555567888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHH--HHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhh--hhHHHH
Q 007766 88 LQNFVGYGLVWLIVTNRLPSLPLW--VLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAG--LSGAIL 161 (590)
Q Consensus 88 ~l~~~GY~~~~l~~~g~i~s~~~~--~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~G--LSa~i~ 161 (590)
+++.+|-.+=-.+..-.++ +..| +......+++..+-+...-+-+-+.-||| |+|-.|..+ +.+| ||.++-
T Consensus 117 ~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~--~v~~n~LGvavg 192 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL--GVMGNPLGVAVG 192 (480)
T ss_pred HHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH--HHhcchHHHHHH
Confidence 9999996442221111122 2234 33445777888888888777799999995 678766543 3444 555444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-08 Score=108.55 Aligned_cols=155 Identities=12% Similarity=0.155 Sum_probs=97.0
Q ss_pred HHhhhcHHHHHHHHHHHhhhcccceeecchHH-HHHHh-cCCcc-cchhHHHHhhhhhccccccchhhhhhhccCCchhH
Q 007766 354 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQ-ICQSL-GYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV 430 (590)
Q Consensus 354 ~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~-I~~s~-g~~~~-~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~ 430 (590)
+..++++.|+.+.++.++...... ..+.... ..+.. +.++. ....++.++...++-+++|+++||++||+.+
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~-~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~---- 299 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASN-IINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW---- 299 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHH-HHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH----
Confidence 345688888877666554432221 1111111 11111 11111 1234455577788889999999999987643
Q ss_pred HHHHHHHHHHHHHHHHH----hc--CchhHHHHHHHHHhhhhccchhhHHHHHHh-------hcccchhhhhhHHHhhhh
Q 007766 431 AMAVAQVVMAFALLYYA----IG--WPGEIYVTTVLVGLSYGAHWAIVPAAASEL-------FGLKSFGALYNFLTLASP 497 (590)
Q Consensus 431 ~l~~~~~l~~~~~l~~~----~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~-------FG~k~~g~nyG~~~~a~~ 497 (590)
.+...+.+++.+.+. .. ....+.+..++.|+++|..+.+.+++++|. .|.|+-|..|+......=
T Consensus 300 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K 377 (473)
T PRK10429 300 --AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK 377 (473)
T ss_pred --HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence 222223222222211 11 123566777889999999999999999999 888999999999988887
Q ss_pred hHHHHhhHhHHHHHHhhhh
Q 007766 498 AGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 498 ~g~~i~~~~l~g~iyd~~~ 516 (590)
+|..+ ++.+.|.+.|..+
T Consensus 378 ~~~al-~~~i~g~~l~~~G 395 (473)
T PRK10429 378 GGSAF-AAFFIGVVLGLIG 395 (473)
T ss_pred HHHHH-HHHHHHHHHHHcC
Confidence 88776 6778888887654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-12 Score=140.33 Aligned_cols=106 Identities=21% Similarity=0.199 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHhhcCccccc
Q 007766 51 RQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPS-LPLWVLCIAIFVGTNGETYFN 128 (590)
Q Consensus 51 ~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s-~~~~~l~~~~~l~G~g~~~~~ 128 (590)
.+..++..+..+|..+ ++++|.+.||+|+|.++.++.++..+|..+. +..+. .+++.+++.-++.|.|.+..+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILI-----AFAPSYNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccc
Confidence 3456677788888876 6899999999999999999999988887553 33220 135666666677788888777
Q ss_pred hhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHH
Q 007766 129 TAALVSCVQNFP-KSRGPVVGILKGFAGLSGAIL 161 (590)
Q Consensus 129 taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~ 161 (590)
+.+.......=| ++||....+.-.++.++..+-
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 666666666666 579999998888887775443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-09 Score=114.58 Aligned_cols=175 Identities=16% Similarity=0.233 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
+.+|++++.+++....-.++...+..+.+++|.+... ..++...+...++.+.+|+++||++||+.. ....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF------FTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH------HHHHH
Confidence 4689999988887666666666788888889887654 466788888999999999999999987532 23333
Q ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 438 VMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 438 l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+..++.++.... ....+++.-++.|++.|..+....+++.|.+..++.++.+|+...+..+|..+ +|.+.|.+.|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL-GPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhcc
Confidence 444443333322 34467788899999999999999999999999999999999999999999876 7889999987544
Q ss_pred hhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 007766 517 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR 573 (590)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r 573 (590)
|+..|.+...+++++.+++.....|
T Consensus 163 --------------------------------w~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 163 --------------------------------WHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999998888887777655444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=104.59 Aligned_cols=326 Identities=15% Similarity=0.089 Sum_probs=182.2
Q ss_pred HHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 007766 42 IKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120 (590)
Q Consensus 42 Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~ 120 (590)
+++.+|....|++.+.+...+|= ...+++|.+.||+++...+..-++. ++++-. .+... .+++.++..-++-
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~----w~~~~~-~~~~~--~s~~~~ialr~ll 144 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL----WGLFGF-LTAAV--HSFPGLIALRFLL 144 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH----HHHHHH-HHHHH--hhhHHHHHHHHHH
Confidence 66788899999999855555554 4578999999999955544433332 222111 11112 2366777777777
Q ss_pred hcCccccchhhHHHHHHhC-CCCCCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHHhhHHHHHhhheeeeecc
Q 007766 121 TNGETYFNTAALVSCVQNF-PKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPSIVVMAFMFIVRPIG 198 (590)
Q Consensus 121 G~g~~~~~taal~t~~knF-P~~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~~~~~v~l~~~~~ir~~~ 198 (590)
|.-++....+....--.|| +++||+..|+.-+.-++|+.+=+.+...+ +-|
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~--------------------------- 197 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN--------------------------- 197 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc---------------------------
Confidence 7778888888888888999 46899999999999999998888777664 100
Q ss_pred CCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCCCCccccc
Q 007766 199 GHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLL 278 (590)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll 278 (590)
......+.+..|+.. ++ +.+..-++.++.+|. +|
T Consensus 198 ---~~~~~~gW~~~FiI~-----G~-----------------------i~~~~gi~~f~~lp~-------------~P-- 231 (495)
T KOG2533|consen 198 ---GSGGLAGWRWLFIIE-----GV-----------------------ITLVLGIVVFFFLPD-------------NP-- 231 (495)
T ss_pred ---CCCCcCCceeehhHH-----HH-----------------------HHHHHHheEEEEecC-------------Ch--
Confidence 000012222232111 10 000000111111111 11
Q ss_pred cccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhh
Q 007766 279 AETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALM 358 (590)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~ 358 (590)
+ +..-.+++|.+-. +++.++ .+ ++...++ .+-..++|+++
T Consensus 232 -~---~~~fl~~~ek~~~---------------------~~~~~~-----------~~---~~~~~~~-~~~~~~~~a~~ 271 (495)
T KOG2533|consen 232 -S---KAWFLTDEEKELV---------------------VERLRE-----------SP---SGGIENK-FKWKGFKEALK 271 (495)
T ss_pred -h---hccccchHHHHHH---------------------HHHHHh-----------cc---CCCcccc-cCHHHHHHHHh
Confidence 0 0000000000000 000000 00 0000000 12345689999
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA 435 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~ 435 (590)
+|..|.+.+.+++....--.+-+-+..+.++ .|++..+ .+-..+.+...+|=+++|++|||+....+ .|..+....
T Consensus 272 dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~-~~~~~~~~~ 350 (495)
T KOG2533|consen 272 DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFA-RRLLFIVFL 350 (495)
T ss_pred chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHH
Confidence 9999999999999777666666666667766 3354432 35667888899999999999999751111 133445556
Q ss_pred HHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHH
Q 007766 436 QVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT 493 (590)
Q Consensus 436 ~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~ 493 (590)
.+.+.+++..+... .+...+.. +-+|......++.+.+.+=.+|..-|++-+.
T Consensus 351 ~~~~~~g~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~ 404 (495)
T KOG2533|consen 351 CLYAIIGAISLLAAAVLPGAYGA-----FLIGPYGLIATAIIALSWTSANLAGNTKALT 404 (495)
T ss_pred HHHHHHHHHHHHhhccchHHhHH-----HHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence 66666664433332 22222221 2233333556667777777788877777654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=105.89 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhhhccc-ceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSG-LTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~G-lm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
+.++.....+.+....+ .++......+.+++|.++.. ...++..+.+.++.+.+|+++||++||+.+ ....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~ 77 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL------LLGL 77 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHH
Confidence 44444444444444444 44445666777888887654 478889999999999999999999986532 3444
Q ss_pred HHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 437 VVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 437 ~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
++..++.++.... ....+.+...+.|++.|......++++.|.+..++-++.+|+......+|..+ ++.+.+.+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~ 156 (385)
T TIGR00710 78 FIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV-APLLGGYILVWL 156 (385)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 4555554444332 34467788889999999999999999999999999999999999999999876 688888887754
Q ss_pred hhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 516 AEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
+ ++..|.+.+.++++..++..+.
T Consensus 157 ~--------------------------------~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 157 S--------------------------------WHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred C--------------------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4 8889999888887777666544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=117.21 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=126.0
Q ss_pred HHhhhcHHHHHHHHHHHhhhccc---ceeecchH-HHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 354 PQALMKADFLLLFFSLVLASGSG---LTVIDNLG-QICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 354 ~~~l~~~~Fwll~~~~~~~~g~G---lm~i~n~~-~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
.++-.++..|.+++++.++.... ..+++.+- ++.++.|.+... ...+++.+...+|.+++|+++||+|||+.+
T Consensus 157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l- 235 (742)
T TIGR01299 157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL- 235 (742)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-
Confidence 45556788887776655544322 22233332 334566776543 477889999999999999999999997633
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHh
Q 007766 428 RPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 506 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~ 506 (590)
.+..++..++.++..+. ....+++.-++.|++.|+.+.+.+++++|.+..++-|..++++.+.+.+|..+ ++.
T Consensus 236 -----ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~~ 309 (742)
T TIGR01299 236 -----LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AAA 309 (742)
T ss_pred -----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 33333334333333322 34568888899999999999999999999999999999999999999999876 565
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 507 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 507 l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
++..+....+-+.. ....+....+|..|.+.+..+++++++.+
T Consensus 310 la~~il~~~G~~~~-------------------~g~~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 310 MAWAIIPHYGWSFQ-------------------MGSAYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred HHHHHHHhccchhc-------------------cccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 66555443221100 00011223488888887776666655443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=108.21 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=118.2
Q ss_pred eeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhH
Q 007766 378 TVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEI 454 (590)
Q Consensus 378 m~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l 454 (590)
+....+.++.+++|.++.+ ..+++..+...++++.+|.++||++||+.+ .....+.+++.++.... ....+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV------ILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH------HHHHHHHHHHHHHHHHHChHHHH
Confidence 3445677788888887764 478899999999999999999999997632 44445555554444333 34578
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCc
Q 007766 455 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS 534 (590)
Q Consensus 455 ~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~ 534 (590)
++.-.+.|++.|..+...++++.|.|..|+.+...+++..+..+|..+ +|.+++.+.+..+
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~~~l~~~~g------------------ 172 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI-AAPLGSFLGELIG------------------ 172 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC------------------
Confidence 888899999999999999999999999999999999999999998876 7889998887544
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHHH
Q 007766 535 FRDQETPTCLGSICYSITCGIMAGLCIIAMV 565 (590)
Q Consensus 535 ~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~v 565 (590)
+|..|.+.+.++++..+
T Consensus 173 --------------w~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 173 --------------WRNVFNAAAVMGVLCIF 189 (394)
T ss_pred --------------HHHHHHHHHHHHHHHHH
Confidence 88899988876665443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-06 Score=92.44 Aligned_cols=365 Identities=14% Similarity=0.117 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHH-HHHHHhhhccCccceeeeccchHHHHHHHHHHHHHH
Q 007766 16 WLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLG-VAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFVG 93 (590)
Q Consensus 16 W~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is-~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~G 93 (590)
|+.+.+-+++.+-.=+. -.-+--=+++++.+|.|-++..+++ +=.-..+.+++++..+..|+|++..+..+-++..+|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555554433222 2233334567789999999999974 444445567899999999999999999999998888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHH-HHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHhcCCh
Q 007766 94 YGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSC-VQNFPKSRGPVVGILKGFAGLSGAILTQIYIMISANE 172 (590)
Q Consensus 94 Y~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~-~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~ 172 (590)
-.+ .... +.+.++...+++|.|.+..|. -+..- =|+||+|-|..+|+-..-.+.++++-+.+.--+
T Consensus 91 ~~i-----R~~~---~~~~L~~gt~l~G~gIav~nV-LLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpl---- 157 (395)
T COG2807 91 ILI-----RSLG---GLPLLFLGTLLAGAGIAVINV-LLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPL---- 157 (395)
T ss_pred HHH-----Hhcc---cHHHHHHHHHHHHhhHHHHHH-hhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHH----
Confidence 422 2211 245566678888888887764 33333 368999999999999998888887766443211
Q ss_pred hhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q 007766 173 TSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIII 252 (590)
Q Consensus 173 ~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (590)
.++ ..+.+-.. +.. +...++-
T Consensus 158 -------------------------a~~-----~~gW~~aL--------~~W---------------------Al~allA 178 (395)
T COG2807 158 -------------------------AQH-----SGGWRGAL--------GFW---------------------ALLALLA 178 (395)
T ss_pred -------------------------HHh-----hccHHHHH--------HHH---------------------HHHHHHH
Confidence 000 00000000 000 0000000
Q ss_pred HHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 007766 253 ILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAA 332 (590)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (590)
++. +. |+.. .+ +.++.
T Consensus 179 l~~---------Wl------------Pq~~-r~--------------~~~~~---------------------------- 194 (395)
T COG2807 179 LLI---------WL------------PQAL-RE--------------QAASI---------------------------- 194 (395)
T ss_pred HHH---------Hh------------hhcc-cc--------------ccccc----------------------------
Confidence 000 11 1100 00 00000
Q ss_pred hhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhcc
Q 007766 333 AEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGR 410 (590)
Q Consensus 333 ~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GR 410 (590)
+. + .++-....|+|.=|.+-+.|.+.+..=-.++.=+.+|..+.|+++++ ..+|+..+.....-
T Consensus 195 --~~---~---------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ 260 (395)
T COG2807 195 --AT---K---------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTA 260 (395)
T ss_pred --cc---c---------cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHH
Confidence 00 0 01112468889999987777776666566667888999999998765 48999999988888
Q ss_pred ccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchh-hhh
Q 007766 411 VGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFG-ALY 489 (590)
Q Consensus 411 l~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g-~ny 489 (590)
+..-++-+| +++ +|++. ....+++.++..-+........++-.+++|+..|+.|++.=.++.+..-..+-. ..-
T Consensus 261 ll~P~la~R--~~n--~r~~~-~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LS 335 (395)
T COG2807 261 LLIPLLARR--SKN--QRPLV-VLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALS 335 (395)
T ss_pred HHHHHHHHH--hcc--cchHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHH
Confidence 888877777 333 23443 333344444433222222122233369999999999999999999987655533 333
Q ss_pred hHH-HhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 490 NFL-TLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 490 G~~-~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
|+. ..+|.+++. +|.+.|.++|.++ .|+..+...+...++..+..+
T Consensus 336 gmaQg~GYllAa~--GP~l~G~lhDa~g-------------------------------sw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 336 GMAQGVGYLLAAF--GPWLFGFLHDATG-------------------------------SWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHhhhhhHHHHhh--hhhhHhHHHHhcC-------------------------------ChHHHHHHHHHHHHHHHHHHh
Confidence 433 356667663 7999999999988 388777777665555444444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-08 Score=107.01 Aligned_cols=171 Identities=11% Similarity=0.096 Sum_probs=132.4
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
++.+|.+.+..++......++...+..+.+++|.+... ..+++..+...+|.+.+|+++||++||+.+ .+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~ 75 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL------LFLV 75 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH------HHHH
Confidence 35677777766665555556666777888888887654 488999999999999999999999986643 4444
Q ss_pred HHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 437 VVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 437 ~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
.+..++.++.... ....+++.-.+.|++.|..+...++++.|.+..++.+...++...+..+|..+ ++.+++.+.|..
T Consensus 76 ~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~ 154 (382)
T PRK10091 76 ALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL-GIPLGTYLSQEF 154 (382)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH-hccHHHHHhhhc
Confidence 4455554444433 35578888899999999999999999999999999999999999999999886 677888887743
Q ss_pred hhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 516 AEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
+ +|.+|.+.+..+++..+...
T Consensus 155 g--------------------------------wr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 155 S--------------------------------WRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred c--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 3 89999998887776665443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.6e-09 Score=107.19 Aligned_cols=148 Identities=18% Similarity=0.279 Sum_probs=117.7
Q ss_pred HHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHH
Q 007766 385 QICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLV 461 (590)
Q Consensus 385 ~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~li 461 (590)
.+.+++|.+..+ ...++..+.+.++.+.+|.++||++||+ .+.+..++.+++.++... .....+.+..++.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR------VLIIGLLLFALGSLLLAFASNFWLLLIARFLL 95 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee------eEeehhhhhhhHHHHhhhhhhHHHHhhhcccc
Confidence 455667766654 4778899999999999999999999866 235555555555333333 3333789999999
Q ss_pred HhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCC
Q 007766 462 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 541 (590)
Q Consensus 462 G~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (590)
|++.|..+....+++.|.+..|+.++.+|+...+..+|..+ ++.+++.++|..+
T Consensus 96 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~------------------------- 149 (352)
T PF07690_consen 96 GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL-GPLLGGFLISYFG------------------------- 149 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHCH-------------------------
T ss_pred ccccccccccccccccccchhhhhhhccccccchhhhhhhc-ccchhhhhhhccc-------------------------
Confidence 99999999999999999999999999999999999999976 6889998886555
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 542 TCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 542 ~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
++..|.+.+.+++++.++..++.
T Consensus 150 -------~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 150 -------WRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp -------HCCHHHHHHHHHHHHHHHHHCCC
T ss_pred -------cccccccccchhhhhhhhHhhhh
Confidence 77889999999999887654433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-07 Score=99.25 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=85.6
Q ss_pred HHHH--hCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 007766 42 IKAH--MGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIF 118 (590)
Q Consensus 42 Lk~~--l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~ 118 (590)
.+++ ++-.++|+.++=-++.+-. ...++.|.+.||.|.|+..++|-+..+..-.+.- +. -+|+++.+.=.
T Consensus 95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa--fg-----~sy~~l~vAR~ 167 (464)
T KOG3764|consen 95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA--FG-----NSYPMLFVARS 167 (464)
T ss_pred chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH--Hc-----chhHHHHHHHH
Confidence 4444 4444455555544444444 4589999999999999999999988777654422 12 24777777889
Q ss_pred HhhcCccccchhhHHHHHHhCCCC--CCchhhhhHhhhhhhHHH
Q 007766 119 VGTNGETYFNTAALVSCVQNFPKS--RGPVVGILKGFAGLSGAI 160 (590)
Q Consensus 119 l~G~g~~~~~taal~t~~knFP~~--RG~a~Gi~~a~~GLSa~i 160 (590)
+-|.|+.+.+|+.+.-.++-||++ ||.|.|+..++.+|+-.+
T Consensus 168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lv 211 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLV 211 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhcccee
Confidence 999999999999999999999964 799999999999998543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=105.89 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=118.4
Q ss_pred ccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-Cc
Q 007766 375 SGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WP 451 (590)
Q Consensus 375 ~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~ 451 (590)
+..++...+.+|.++++.+... ..++++.+...+|.+.+|+++||+|||+.+ ....++..++.++.... ..
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l------~~~~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL------ITGALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH------HHHHHHHHHHHHHHHHcCCH
Confidence 4456667777888888876543 488999999999999999999999997633 33344444444444333 34
Q ss_pred hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCC
Q 007766 452 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML 531 (590)
Q Consensus 452 ~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~ 531 (590)
..++++-++.|++.|.......+++.|.|..++-++..+++..+..+|..+ +|.+.+.+.|..+
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~lg~~l~~~~g--------------- 168 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII-GPLSGAALMHFVH--------------- 168 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC---------------
Confidence 467888888898887766777788999999999999999999999998876 6877777765433
Q ss_pred CCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 532 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 532 ~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
+|..|.+.+.+.+++.++.++
T Consensus 169 -----------------w~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 169 -----------------WKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 899999998888777665543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-07 Score=94.51 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=106.5
Q ss_pred HhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH---hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 355 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 355 ~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s---~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
..++++.+|+..+.+++-.|.-..+.+.+....++ .|.+... ..++.+...-.+||++.+.++||+++++.+
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l--- 211 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL--- 211 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence 46788999998888888777666666656655543 3555433 478899999999999999999999875522
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHH
Q 007766 430 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS 509 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g 509 (590)
.+...+.+++.++...........+..++|++.+..+...=+...+.++. +-++.-+++. ...+|+.+ .|.+.|
T Consensus 212 ---~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~~-~~~~Gg~i-~P~l~G 285 (310)
T TIGR01272 212 ---AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGILC-LAIVGGAI-VPLLQG 285 (310)
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHH-HHHhcchH-HHHHHH
Confidence 23333333333333222222234567788999998888887888888864 5567777764 44577776 588999
Q ss_pred HHHhhhh
Q 007766 510 GIYDYYA 516 (590)
Q Consensus 510 ~iyd~~~ 516 (590)
.+.|..+
T Consensus 286 ~lad~~g 292 (310)
T TIGR01272 286 SLADCLG 292 (310)
T ss_pred HHHHhcc
Confidence 9999765
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.1e-08 Score=104.77 Aligned_cols=170 Identities=10% Similarity=0.161 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
.-++.+++.+++.......+-..+.++.+++|.+..+ ..+++..+...++++.+|+++||++||+.+ .+..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~------~~~~~ 96 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM------GIGLI 96 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH------HHHHH
Confidence 4444445444444333333333456677788887654 477889999999999999999999987632 44445
Q ss_pred HHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 438 VMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 438 l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+..++.++..... ...+.+.-.+.|+..|..+....+++.|.|..|+.|+-.|+...+..+|+.+ ++.+.+.++|..+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g 175 (434)
T PRK11663 97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL-IPLVVGAIALHYG 175 (434)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc
Confidence 5555544443322 3345556667899999999999999999999999999999999999999986 6888998887544
Q ss_pred hhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 517 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
+|..|.+.+.++++..++..
T Consensus 176 --------------------------------w~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 176 --------------------------------WRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 89999998877665544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-08 Score=105.23 Aligned_cols=175 Identities=10% Similarity=0.038 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHH-HHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
+++|++.+..++....--++..-+.... +++|.+..+ ..+++..+...++++..|.++||++||+.. .+..
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~------~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM------LLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH------HHHH
Confidence 4588888877665444334444455444 457877654 477778888999999999999999997532 3333
Q ss_pred HHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 437 VVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 437 ~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
.+..++++++... ....+.+...+.|.+++......++.++|.++.++.++.+|+......+|..+ +|.+.+.+++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i-gp~l~~~l~~-~ 158 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV-GPPLGTLLVM-Q 158 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-h
Confidence 3344444433332 23345555567777888778888999999999999999999999999998876 6888888874 2
Q ss_pred hhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007766 516 AEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT 574 (590)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~ 574 (590)
+ ++..|.+.+.++++++++..+...|.
T Consensus 159 g--------------------------------~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 159 S--------------------------------INLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred c--------------------------------cCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 78889998888888766665544333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=101.54 Aligned_cols=170 Identities=11% Similarity=-0.000 Sum_probs=121.8
Q ss_pred HHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHH
Q 007766 362 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM 439 (590)
Q Consensus 362 Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~ 439 (590)
||+++...++......+....+..+.++.+.+... ...++..+...++.+.+|+++||++||+.+ .+...+.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~------~~~~~~~ 74 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM------IGADLIR 74 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH------HHHHHHH
Confidence 45555555554444444444445555666665443 477888889999999999999999997632 3333333
Q ss_pred HHHHHHH-Hhc-----CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHh
Q 007766 440 AFALLYY-AIG-----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 513 (590)
Q Consensus 440 ~~~~l~~-~~~-----~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd 513 (590)
.++.++. ... ....+++...+.|++.|.......++++|.+..++.++.+|+...+..+|..+ ++.+++.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~ 153 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV-GPGIGGLMYA 153 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3332222 111 33467888889999999999999999999999999999999999999999976 7889999987
Q ss_pred hhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 514 YYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
..+ ++..|.+.+..++++.++...+
T Consensus 154 ~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 154 TLG--------------------------------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred Hhh--------------------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 654 7888988887776665554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-08 Score=107.97 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHH---hcCCccc--chhHHHHhhhhhccccccchhhh-hhhccCCchhHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTS--IYVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMA 433 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s---~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~-l~r~~~~~R~~~l~ 433 (590)
+.+|.+++..++...+--.+..++....++ +|.+..+ ..++.+++...++++.+|+++|| +|||+.+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l------~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM------V 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH------H
Confidence 346777766555433333344556666554 5666543 48899999999999999999999 8987743 5
Q ss_pred HHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccc---hhhhhhHHHhhhhhHHHHhhHhHHH
Q 007766 434 VAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS---FGALYNFLTLASPAGSLIFSGVIAS 509 (590)
Q Consensus 434 ~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~---~g~nyG~~~~a~~~g~~i~~~~l~g 509 (590)
+...+.+++++++.... ...++++.++.|++.|...+..+++++|.|..++ -++.+++.+.+..+|+.+ +|.+.|
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i-g~~l~g 162 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI-SPLLAG 162 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH-HHHHHH
Confidence 55566666666555433 3457778888999999999999999999998754 667789999999999986 788999
Q ss_pred HHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 510 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 510 ~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
.+.|..+ |+..|.+.+..++++++.-+
T Consensus 163 ~l~~~~g--------------------------------~~~~f~~~~~~~~~~~l~~~ 189 (475)
T TIGR00924 163 VIAENYG--------------------------------YHVGFNLAAVGMVIGLLTFF 189 (475)
T ss_pred HHHHhcC--------------------------------hHHHHHHHHHHHHHHHHHHH
Confidence 9987544 99999998877666654433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=97.53 Aligned_cols=169 Identities=22% Similarity=0.295 Sum_probs=125.4
Q ss_pred HHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHH
Q 007766 363 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA 440 (590)
Q Consensus 363 wll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~ 440 (590)
|.+.+..++......+.......+.++.+.++.. ...++..+.+.++.+.+|+++||++||+.+ .....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~------~~~~~~~~ 75 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL------LLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh------HHHHHHHH
Confidence 4444444443333333344455566677766543 367788899999999999999999987733 45555555
Q ss_pred HHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhh
Q 007766 441 FALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ 519 (590)
Q Consensus 441 ~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~ 519 (590)
++++.... .....+++...+.|++.|..+...++++.|.+..|+.++.+++......+|..+ ++.+++.+.|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--- 151 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG--- 151 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhh---
Confidence 55544433 234578888899999999999999999999999999999999999999999986 6889998887644
Q ss_pred hhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 520 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
++..|.+.+...+++.++...+
T Consensus 152 -----------------------------~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 152 -----------------------------WRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888777776665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=103.68 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=115.8
Q ss_pred HHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHH
Q 007766 384 GQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVL 460 (590)
Q Consensus 384 ~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~l 460 (590)
..+.+++|.++.. ...++..+.+.++.+.+|+++||++||+.+ .....+..++.++... .....+++.-.+
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAGAYVSLYILRVL 91 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3455667776654 478899999999999999999999997754 3334444444333332 234578888899
Q ss_pred HHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCC
Q 007766 461 VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQET 540 (590)
Q Consensus 461 iG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (590)
.|++.|..+...+++++|.+..|+-++..|+......+|..+ ++.+.+.+.+..+
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------------ 146 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII-GGPLVGWILIHFS------------------------ 146 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHhCC------------------------
Confidence 999999999999999999999999999999999999999986 6778888876433
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 541 PTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 541 ~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
++..|.+.+.++++..++.....
T Consensus 147 --------~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 147 --------WQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred --------chHHHHHHHHHHHHHHHHhhhee
Confidence 88899998888777666665443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-06 Score=92.41 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=102.0
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HHHhcCCcccchhHHHHhhhhhccccccchhhhhhhccCCchhHH
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA 431 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s~g~~~~~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~ 431 (590)
.++++|+|++...++..++. +......++-..+ .+++|.......-.+.+ .+.+.=+..=.+++|+-||++.. ..
T Consensus 200 ~~~llk~~~~~~Fll~~~l~-~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~-l~~~aEi~~f~~~~~~~~r~g~~--~l 275 (400)
T PF03825_consen 200 ALKLLKNPRFLVFLLAAFLI-GISHAAYYTFFSIYLQELGGYSGSTIGILWA-LGVVAEIPFFFFSGRFLKRFGIK--WL 275 (400)
T ss_pred HHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcCHH--HH
Confidence 36899999998765554443 3334444444444 67777322221112222 23345667777888998888763 22
Q ss_pred HHHHHHHHHHHHHHHHhc-CchhHHHH-----HHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHH-hhhhhHHHHhh
Q 007766 432 MAVAQVVMAFALLYYAIG-WPGEIYVT-----TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFS 504 (590)
Q Consensus 432 l~~~~~l~~~~~l~~~~~-~~~~l~~~-----~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~-~a~~~g~~i~~ 504 (590)
+.++.+..++=..+.+.. .+....+. -.+=|++||..+......+.+....+.-++--|+.. +..++|..+ +
T Consensus 276 l~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i-G 354 (400)
T PF03825_consen 276 LLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI-G 354 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH-H
Confidence 333444444333334433 33222222 234699999999999999999997777788888765 567899987 6
Q ss_pred HhHHHHHHhhhhhh
Q 007766 505 GVIASGIYDYYAEK 518 (590)
Q Consensus 505 ~~l~g~iyd~~~~~ 518 (590)
..++|.+||+.+.+
T Consensus 355 ~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 355 SLIGGWLYDAFGAR 368 (400)
T ss_pred HHHHHHHHHHhcch
Confidence 78999999987743
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-08 Score=102.60 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=120.5
Q ss_pred eeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhH
Q 007766 378 TVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEI 454 (590)
Q Consensus 378 m~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l 454 (590)
|+...+.++.+++|.++.+ ...++..+...++++.+|.++||++||+. +.....+..++.++... .....+
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~------~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV------ILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH------HHHHHHHHHHHHHHHHHHccHHHH
Confidence 4445667788888887654 47788999999999999999999998653 24444444555444333 234567
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCc
Q 007766 455 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS 534 (590)
Q Consensus 455 ~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~ 534 (590)
++...+.|++.|.......+++.|.+..++.++..|+...+..+|..+ +|.+.+.+.|..+
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------ 143 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL-APIIGGWLLVWFS------------------ 143 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC------------------
Confidence 788889999999999999999999999999999999999999998876 7888888887544
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 535 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 535 ~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
++..|.+.+.++++..++..+..
T Consensus 144 --------------~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 144 --------------WHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 78889998888877766665443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=101.13 Aligned_cols=148 Identities=11% Similarity=0.136 Sum_probs=116.8
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTV 459 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~ 459 (590)
+.++.++++.+..+ ..+++..+...++.+.+|.++||++||+. +.....+.++++++... .....+.+.-.
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 105 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL------LIGLFVLFIASHVLSALAWNFTVLLISRI 105 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH------HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 57788888887664 47788888899999999999999999763 24455555555544443 33456777778
Q ss_pred HHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCC
Q 007766 460 LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539 (590)
Q Consensus 460 liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.|++.|..+....+++.|.+..++-++..|++..+..+|..+ +|.+.+.+.+..+
T Consensus 106 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i-g~~l~~~l~~~~g----------------------- 161 (390)
T PRK03545 106 GIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL-GLPLGRVIGQYLG----------------------- 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH-HhhHHHHHHHHhc-----------------------
Confidence 8999999888999999999999999999999999999999886 6878888876544
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 540 ~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
+|..|.+.+.++++..++...
T Consensus 162 ---------w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 162 ---------WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888777665554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-08 Score=112.56 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=98.8
Q ss_pred cccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHH--hcCC------
Q 007766 35 FGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIV--TNRL------ 105 (590)
Q Consensus 35 fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~--~g~i------ 105 (590)
.+.--++++++++++.++..++..+.++|.. ..++.|.+.||+|+|..+.+|.++.++|-.+..+.- .+..
T Consensus 52 ~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~ 131 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTV 131 (633)
T ss_pred HHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccc
Confidence 3444578999999999999999889999985 478999999999999999999999999976654431 0000
Q ss_pred ----------------------------------C--CchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhh
Q 007766 106 ----------------------------------P--SLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVG 148 (590)
Q Consensus 106 ----------------------------------~--s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~G 148 (590)
. +..++++.+.-++.|.|.+..++........|+| ++|++..|
T Consensus 132 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~ 211 (633)
T TIGR00805 132 SSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIG 211 (633)
T ss_pred cccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHH
Confidence 0 1123445567888999999999999999999997 56899999
Q ss_pred hhHhhhhhhHHHH
Q 007766 149 ILKGFAGLSGAIL 161 (590)
Q Consensus 149 i~~a~~GLSa~i~ 161 (590)
+..+...++.++=
T Consensus 212 i~~~~~~iG~~lG 224 (633)
T TIGR00805 212 ILESIAVFGPAFG 224 (633)
T ss_pred HHHHHHHhhhHHH
Confidence 9887777776443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-07 Score=101.01 Aligned_cols=176 Identities=13% Similarity=0.080 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhhhcccceeecchHH-HHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 361 DFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 361 ~Fwll~~~~~~~~g~Glm~i~n~~~-I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
.++++++.+.+. ..--..++.+.+ +.++++.+..+ ...+++.+.-.++.+.+|+++||+|||+.+ ....+
T Consensus 9 ~~~~~~~~~~~~-~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~------~~~~~ 81 (412)
T TIGR02332 9 LIIFLFILFIFS-FLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI------AGIMV 81 (412)
T ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH------HHHHH
Confidence 344444444432 222233333333 34567776654 478899999999999999999999997632 44444
Q ss_pred HHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 438 VMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 438 l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+..++.++... .....+++.-.+.|++.|+.+.....+++|+|..|+-|+..|+...+..+|..+ ++.+++.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~ 160 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL-GLILSGYILALDG 160 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 55555444443 335578888899999999998888889999999999999999999999999976 6878888875321
Q ss_pred hhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 517 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
- .+..-+|.+|.+.+..+++.+++..+.
T Consensus 161 ~--------------------------~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 161 L--------------------------MALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred C--------------------------CCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 0 001139999999887776655544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-06 Score=96.05 Aligned_cols=375 Identities=18% Similarity=0.225 Sum_probs=212.3
Q ss_pred hhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccch
Q 007766 51 RQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNT 129 (590)
Q Consensus 51 ~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~t 129 (590)
++.++++...++|... .+++|++.|++|.|.+++++.++..+|+.+...+. +++++...=++.|.|.|....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------SWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHhccchhhhhh
Confidence 3457888889999865 78999999999999999999999999987765542 466777788888888887754
Q ss_pred hhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHh-cCC--hhhHHHHHHHhhHHHHHhhheeeeeccCCccccC
Q 007766 130 AALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMI-SAN--ETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRL 205 (590)
Q Consensus 130 aal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~--~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~ 205 (590)
.+-.-...-=|. .||..+.+..-.+. .+..+..+...+ +.+ ...+.+.++..|.++..++++++ | +. |
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~-p--es----p 233 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFL-P--ES----P 233 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhC-C--CC----h
Confidence 333333333265 69999998888888 445555444444 322 35555555555555555442222 1 00 0
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCCCCCCccccccccccCc
Q 007766 206 SDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGE 285 (590)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~ 285 (590)
+ + ++...
T Consensus 234 ----~-------------~----------------------------------------------------L~~~g---- 240 (513)
T KOG0254|consen 234 ----R-------------W----------------------------------------------------LIEKG---- 240 (513)
T ss_pred ----H-------------H----------------------------------------------------HHHcC----
Confidence 0 0 00000
Q ss_pred CCCccchhhhhh---hccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCHHH----hhh
Q 007766 286 ASKSEDYQEEVI---LSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQ----ALM 358 (590)
Q Consensus 286 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~----~l~ 358 (590)
.+++..... .+.. +++. ....++.+.... .+... .+ .+..+.+ ..+
T Consensus 241 ---~~~~a~~~l~~l~g~~-~~~~-----------~~~~~~~~~~~~---~~~~~-------~~--~~~~~~~l~~~~~~ 293 (513)
T KOG0254|consen 241 ---RLEEAKRSLKRLRGLS-PEDV-----------EVELELLKIKLL---VEAEV-------AE--GKASWGELFSPKVR 293 (513)
T ss_pred ---ChHHHHHHHHHHhCCC-Ccch-----------HHHHHHHHHHHH---Hhhhc-------cc--ccccHHHhcCcchH
Confidence 000000000 0000 0000 001111110000 00000 00 0111222 344
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcc-cchhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~-~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
++-++-.-++.+.-...=..+++-..+|.+..|.++. ...-.+.++.|.++-+++.++-||+|||. .+.....
T Consensus 294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~------lll~s~~ 367 (513)
T KOG0254|consen 294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK------LLLFGAA 367 (513)
T ss_pred HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHhHH
Confidence 5556666666666663336666777888888888765 45556788889999999999999998855 3355555
Q ss_pred HHHHHHHHHHhc-----C--------chhHHHHHHHHHhhhhccchhhHH-HHHHhhcccchhhhhhHHHhhhhhHHHHh
Q 007766 438 VMAFALLYYAIG-----W--------PGEIYVTTVLVGLSYGAHWAIVPA-AASELFGLKSFGALYNFLTLASPAGSLIF 503 (590)
Q Consensus 438 l~~~~~l~~~~~-----~--------~~~l~~~~~liG~~yG~~~~l~P~-i~ad~FG~k~~g~nyG~~~~a~~~g~~i~ 503 (590)
.|.++++++... . .........+.=.+|...++-.|. +.+|.|=.+.=++-.++.....-+.+++.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v 447 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI 447 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence 555555443311 0 112333344444577777888887 66999988776666665544444444332
Q ss_pred hHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHH
Q 007766 504 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV-MSLIVVHRTKSVYA 579 (590)
Q Consensus 504 ~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~v-ls~~l~~r~r~~~~ 579 (590)
...|...... .+ ...+|.+.++.|.++.+ ...+..-.||....
T Consensus 448 -----~~~~~~~~~~-------------------------~~---~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 448 -----SFFFPFITEA-------------------------LG---IGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred -----HHHHHHHHHh-------------------------cc---ccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 2233222210 00 35567888888888777 56666666765444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=99.97 Aligned_cols=170 Identities=9% Similarity=0.101 Sum_probs=123.9
Q ss_pred HHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHH
Q 007766 362 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM 439 (590)
Q Consensus 362 Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~ 439 (590)
.|++.....++.....+++..+.++.++++.++.. ...++..+...++.+.+|.++||++||+.+ .....+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~------~~~~~~~ 83 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI------LVGMSIF 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHH
Confidence 44455555555555555666677888888887654 478889999999999999999999996633 3344444
Q ss_pred HHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhh
Q 007766 440 AFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK 518 (590)
Q Consensus 440 ~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~ 518 (590)
.++.++... .....+.+...+.|++.|........++.|.+..++.+...++..++..++..+ +|.+.+.+.|..+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g-- 160 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL-APLIGGLLTTLFG-- 160 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC--
Confidence 444433333 234467788888899998888888889999998899999999999998888865 7888888776433
Q ss_pred hhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 519 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
++..|.+.+.++++..++..+.
T Consensus 161 ------------------------------~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 161 ------------------------------WRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 8889998877766555444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=103.74 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=119.5
Q ss_pred HHhhhcH-HHHHHHHHHHhhhcccceeecchHHHH-HHhcCCccc--chhHHHHhhhhhccccccchhhh-hhhccCCch
Q 007766 354 PQALMKA-DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS--IYVSMISIWNFLGRVGGGYFSEA-IVRKFAYPR 428 (590)
Q Consensus 354 ~~~l~~~-~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~-l~r~~~~~R 428 (590)
.+.+++| .+|.++++.++...+--.+...+.... +++|.++.. ..++.+........+++|+++|| +|||+.+
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~-- 91 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI-- 91 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH--
Confidence 3566777 499999887665543223333444444 567876653 24444444444455789999999 5986643
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHhhhhccchhhHHHHHHhhcccc--hhhhhhHHHhhhhhHHHHhh
Q 007766 429 PVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 429 ~~~l~~~~~l~~~~~l~~~~~~--~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~--~g~nyG~~~~a~~~g~~i~~ 504 (590)
.....+..++++++.... ...++++-++.|++.|......+++++|.|..++ .+..+++.+++..+|+.+ +
T Consensus 92 ----~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~-g 166 (500)
T PRK09584 92 ----MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF-S 166 (500)
T ss_pred ----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH-H
Confidence 445555565655544432 2356677788899999999999999999996543 455788888899999976 7
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS 567 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls 567 (590)
|.+.|.+.|..+ |+..|.+.+...+++++..
T Consensus 167 p~i~g~l~~~~g--------------------------------~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 167 MLATPWLAAKYG--------------------------------WSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHHhhC--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 889999988544 8999998876666655443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=97.39 Aligned_cols=149 Identities=15% Similarity=0.251 Sum_probs=112.1
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTV 459 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~ 459 (590)
..++.++++.++.+ ...++..+...++++.+|.++||+|||+.+ .+...+..++.++.... ....++++-.
T Consensus 26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (377)
T TIGR00890 26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFYAIADSLAALYLTYG 99 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677877654 488999999999999999999999998754 34444555554443332 2346777777
Q ss_pred HHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCC
Q 007766 460 LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539 (590)
Q Consensus 460 liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.|++.|..+......+.|+| .|+-+...++...+..+|+.+.++ +.+.+.|..+
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~----------------------- 154 (377)
T TIGR00890 100 LASAGVGIAYGIALNTAVKWF-PDKRGLASGIIIGGYGLGSFILSP-LITSVINLEG----------------------- 154 (377)
T ss_pred HHhHHHHHHHHhHHHHHHHHc-CcccHHHHHHHHHhcchhHhHHHH-HHHHHHhccc-----------------------
Confidence 999999988888888889998 478899999999999999877544 6666655322
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 540 ~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
+|..|.+.+.++++..++.+++.
T Consensus 155 ---------~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 155 ---------VPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhe
Confidence 89999999998888777766544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=103.08 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=110.2
Q ss_pred HhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHH
Q 007766 355 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA 431 (590)
Q Consensus 355 ~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~ 431 (590)
++.++++||.+++++++...+--.+..-+....++ +|.+..+ ..+++..+...++++.+|+++||++||+.+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~----~ 80 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL----L 80 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----H
Confidence 46788999999888777665433444444444444 7777654 489999999999999999999999986643 1
Q ss_pred HHHHHHHHHHHHH-HHHhc---C-c--hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhh
Q 007766 432 MAVAQVVMAFALL-YYAIG---W-P--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 432 l~~~~~l~~~~~l-~~~~~---~-~--~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~ 504 (590)
+...........+ ..... . . ....++..+.|.++.......+..+.+ + .++.|..||.......+|..+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i-~ 157 (420)
T PRK09528 81 WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWAL-C 157 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHH-H
Confidence 1111111111111 11110 0 0 112333444555555555556665543 3 456777888888777888876 6
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
|.++|.++|. + ++..|.+.+.++++++++.+.+
T Consensus 158 ~~~~g~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 158 AFIAGILFNI-N--------------------------------PQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHHhc-C--------------------------------chHhHHHHHHHHHHHHHHHhcc
Confidence 8889988863 2 5677888887777766665544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=7e-07 Score=97.45 Aligned_cols=151 Identities=14% Similarity=0.125 Sum_probs=109.9
Q ss_pred HHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-----CchhHHH
Q 007766 384 GQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-----WPGEIYV 456 (590)
Q Consensus 384 ~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-----~~~~l~~ 456 (590)
.+..++.|.++.+ ...++..+...++.+.+|+++||++||+.+ .....+.+++.+..... ....+++
T Consensus 50 ~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (438)
T TIGR00712 50 MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILSAAVMLLMGFVPWATSSIAIMFV 123 (438)
T ss_pred hHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 3445556766554 477889999999999999999999987643 33334444443333221 1224566
Q ss_pred HHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccC
Q 007766 457 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR 536 (590)
Q Consensus 457 ~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~ 536 (590)
.-.+.|++.|..+......+.|.|..|+.|+..|+..++..+|+.+ ++.+.+...+.+.
T Consensus 124 ~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~~~~~~~-------------------- 182 (438)
T TIGR00712 124 LLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLLGMAWFN-------------------- 182 (438)
T ss_pred HHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHHHHHHhh--------------------
Confidence 6778899999999999999999999999999999999999998876 4656665544322
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 537 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 537 ~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
-+|.+|.+.+..+++..++.+++.+
T Consensus 183 -----------~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 183 -----------DWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1899999999998887766665543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=98.99 Aligned_cols=171 Identities=12% Similarity=0.098 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
+-+|..++.+++..+.-.+.-..+.++.++++.+..+ ...++..+...+|.+.+|+++||++||+.+ ....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~------~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL------IFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHH
Confidence 4567777776666555444444567778888887654 467888899999999999999999997632 34444
Q ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 438 VMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 438 l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+..++.++.... ....+++.-.+.|++.|..++...+.+.|.|..|+-+...++......+|+.+ +|.+.+.+.+.+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~ 159 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc
Confidence 555554444433 23467778889999999999999999999998888899888888888888876 5778877765332
Q ss_pred hhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 517 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
-+|..|.+.+.++++..++.+
T Consensus 160 -------------------------------gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 160 -------------------------------EWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 288999988877766555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-07 Score=96.65 Aligned_cols=171 Identities=12% Similarity=0.046 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhhc----ccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHH
Q 007766 360 ADFLLLFFSLVLASG----SGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA 433 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g----~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~ 433 (590)
+++|++.+.+.+... ..-++...+.++.++++.+... ..++...+...++.+..|.++||++||+.+ .
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~ 82 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM------L 82 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------H
Confidence 677777776665554 3444555667778888887654 467889999999999999999999986632 3
Q ss_pred HHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 434 VAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 434 ~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
....+..++.+.... .....+++...+.|++.|......++.+.|.|..++-+...++......++..+ +|.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~ 161 (406)
T PRK15402 83 AGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL-GPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333444444333332 234467788888999999988899999999998777777777777666677654 687888777
Q ss_pred hhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 513 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 513 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
|..+ ++..|.+.+.+++++.+....
T Consensus 162 ~~~~--------------------------------w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 162 HVLP--------------------------------WRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HccC--------------------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 6433 888999988888777665543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-07 Score=96.32 Aligned_cols=174 Identities=15% Similarity=0.173 Sum_probs=124.5
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc-------chhHHHHhhhhhccccccchhhhhhhccCCchhHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS-------IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA 431 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~-------~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~ 431 (590)
+++|+.+|+..++..-..-++..-+..+.+++|.+..+ ...++..+...++.+.+|+++||++||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----- 87 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML----- 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH-----
Confidence 35677777776555444344555677777888876432 356677888999999999999999986532
Q ss_pred HHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHH
Q 007766 432 MAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG 510 (590)
Q Consensus 432 l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~ 510 (590)
.....+..++.+++... ....+++...+.|++.| .+....+.+.|.+..++.+...|+...+..+|..+ ++.+.+.
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 164 (408)
T PRK09874 88 -LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALL-GPLAGGL 164 (408)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33444444444443332 34467777788888744 56677778899998888999999999998998876 6889998
Q ss_pred HHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 511 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 511 iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
+.|..+ ++.+|.+.+.+++++.++..++.+
T Consensus 165 l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 165 LADSYG--------------------------------LRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HHHHhC--------------------------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887544 888999999888877776665443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-07 Score=95.83 Aligned_cols=145 Identities=12% Similarity=0.172 Sum_probs=105.1
Q ss_pred HHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHH
Q 007766 363 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA 440 (590)
Q Consensus 363 wll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~ 440 (590)
...++.+++....-.++.....++.+++|.+..+ ...++..+...++.+.+|+++||++||+.+ .+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~ 88 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM------VTSIVLFS 88 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHH
Confidence 3344444333332223333344556677877654 477889999999999999999999987632 34444444
Q ss_pred HHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 441 FALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 441 ~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
++.++... .....+++.-.+.|++.|..+...++++.|.+..++-+...|+..++..+|..+ ++.+.+.+.+.
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~~l~~~ 162 (405)
T TIGR00891 89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV-AAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 45444333 234567888899999999999999999999999999999999999999999876 67788777654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=97.04 Aligned_cols=160 Identities=9% Similarity=0.075 Sum_probs=118.0
Q ss_pred hhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc
Q 007766 372 ASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG 449 (590)
Q Consensus 372 ~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~ 449 (590)
+..+--++.....++.++++.++.. ...++..+...++.+.+|+++||++||+.+ .....+..++.++....
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL------LAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH------HHHHHHHHHHHHHHHHh
Confidence 3333344555667777888887654 478899999999999999999999987632 33444444444443332
Q ss_pred -CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccC
Q 007766 450 -WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 528 (590)
Q Consensus 450 -~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~ 528 (590)
....+.+.-.+.|++.|.......+++.|.|..++.+..++.......+|..+ +|.+.|.+.|..+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g------------ 158 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL-APLLGAWLLNHFG------------ 158 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC------------
Confidence 23456777788888888888888899999999988888888888888888775 6888888887544
Q ss_pred CCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 529 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 529 ~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
++..|.+.+.++++..++..++
T Consensus 159 --------------------~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 159 --------------------WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHc
Confidence 8888998888877776665544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.3e-06 Score=89.65 Aligned_cols=183 Identities=18% Similarity=0.168 Sum_probs=114.9
Q ss_pred HHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HHHhcCCcc---c---chhHHHHhhhhhccccccchhhhhhhccCC
Q 007766 354 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADT---S---IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 426 (590)
Q Consensus 354 ~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s~g~~~~---~---~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~ 426 (590)
.+.+|+++||.+-+ +.++..+--.+.+|--++ -+++..+.+ . ...|+=-+.+...=....++-+|+|.|+.
T Consensus 214 ~~l~k~~~fw~~~l-~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~- 291 (412)
T PF01306_consen 214 LSLFKMRNFWFFVL-FVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL- 291 (412)
T ss_dssp HHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-
T ss_pred HHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH-
Confidence 57899999999644 333332221222211111 122211111 1 14445555566666666777777776553
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHH-HhhhhhHHHHhh
Q 007766 427 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS 504 (590)
Q Consensus 427 ~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~-~~a~~~g~~i~~ 504 (590)
+.++.+.+++=...... +.+..+.+.=.+=|+.++...--.==.+++.|..|-.++.|.+- .++..+|..+++
T Consensus 292 -----Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s 366 (412)
T PF01306_consen 292 -----LLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS 366 (412)
T ss_dssp -----HHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 24444444443333332 33456677777777877776666666789999988889999885 588999999876
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS 576 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r~ 576 (590)
+ ++|.+||+-+ |+.+|.+++.+.+..++++..+.++.|+
T Consensus 367 ~-~~G~lyd~~G--------------------------------~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 367 P-LAGYLYDRIG--------------------------------FQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp H-HHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred h-hHHhhHhhcC--------------------------------cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 5 9999999988 8999999999988888888877655544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.3e-05 Score=84.65 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=84.5
Q ss_pred cccccccccHH-HHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeecc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007766 31 IGYLFGSISPV-IKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEIL-PVWSINLIGVLQNFVGYGLVWLIVTNRLPS 107 (590)
Q Consensus 31 t~Y~fSvys~~-Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~-gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s 107 (590)
+.|.+..+-+. |.+++|+++++...+........+ ..+++|++.||+ |+|.++.+|.++..+|+.++.. .+. .
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~--~~~--~ 99 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA--SEI--H 99 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH--hhc--c
Confidence 55655545444 567799999999986444445544 567999999999 9999999999999999865432 111 1
Q ss_pred chHHHHHHHHHHhhcCccccchhhHHHHHHhCCC---CCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 108 LPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK---SRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 108 ~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~---~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
.....+.+.....|. +...+..-....+.||+ +|+.+.++.-....+++.+-..+...+
T Consensus 100 ~~~~~l~l~li~iG~--G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L 161 (493)
T PRK15462 100 PSFLYLSLAIIVCGY--GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA 161 (493)
T ss_pred hhHHHHHHHHHHHhc--ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222343 33323233445788985 488888888877777776555555555
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.7e-07 Score=97.55 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=118.4
Q ss_pred ceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-Cchh
Q 007766 377 LTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGE 453 (590)
Q Consensus 377 lm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~ 453 (590)
-+++.-+.++.+++|.++.. ..++++.+...++.+..|+++||++||+. +.....+..++.++.... ....
T Consensus 20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~------l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV------AIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH------HHHHHHHHHHHHHHHHHhCcHHH
Confidence 35555677888888887654 36788888999999999999999998652 234444445554444332 2345
Q ss_pred HHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCC
Q 007766 454 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV 533 (590)
Q Consensus 454 l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~ 533 (590)
+++.-.+.|++.|..+....+++.|.+..|+-++..|+......+|..+ +|.+++.+.|..+
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~i~~~l~~~~g----------------- 155 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL-APVLGHLIMLKFP----------------- 155 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcC-----------------
Confidence 6777788899999999999999999999999999999988888888765 6877777765332
Q ss_pred ccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 534 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 534 ~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
|+..|.+.+.++++..+++++..
T Consensus 156 ---------------~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 156 ---------------WQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999888888777765544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=97.69 Aligned_cols=146 Identities=18% Similarity=0.134 Sum_probs=108.0
Q ss_pred HHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHH
Q 007766 385 QICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLV 461 (590)
Q Consensus 385 ~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~-~~~~~~l~~~~~li 461 (590)
.+.+++|.++.+ ...+...+...+|.+.+|+++||++||+.+ .....+..++.++.. ......+.+.-.+.
T Consensus 40 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 113 (406)
T PRK11551 40 RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGLFSLATAQAWDFPSLLVARLLT 113 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455677776554 477888999999999999999999997743 233333333333332 23345677888899
Q ss_pred HhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCC
Q 007766 462 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 541 (590)
Q Consensus 462 G~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (590)
|++.|..+...++++.|.|..|+-++..|+...+..+|+.+ ++.+.+.+.+..+
T Consensus 114 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------------------------- 167 (406)
T PRK11551 114 GVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA------------------------- 167 (406)
T ss_pred HhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccccC-------------------------
Confidence 99999999999999999999999999999999999999876 5766665544222
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 542 TCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 542 ~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
++..|.+.+.++++..++...
T Consensus 168 -------~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 168 -------WRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH
Confidence 888898887766655544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=82.61 Aligned_cols=133 Identities=11% Similarity=0.185 Sum_probs=102.4
Q ss_pred hHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHH
Q 007766 399 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAAS 477 (590)
Q Consensus 399 Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~a 477 (590)
.+..++.+.++++.+|++.||++||+.. .....+..++.++... .....+.+...+.|++.|.......+.+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVL------LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566788899999999999999886632 3333444444433332 23446777889999999999999999999
Q ss_pred HhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHH
Q 007766 478 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA 557 (590)
Q Consensus 478 d~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~ 557 (590)
|.+..++.++-+|+..+...+|..+ ++.+.+.+.|..+ |+..|.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--------------------------------~~~~~~~~~ 124 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLL-GPPLGGVLAQFLG--------------------------------WRAPFLFLA 124 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHH-hHHhHHHHhcccc--------------------------------hHHHHHHHH
Confidence 9999999999999999999999976 6888888876433 788898888
Q ss_pred HHHHHHHHHHHHh
Q 007766 558 GLCIIAMVMSLIV 570 (590)
Q Consensus 558 ~~~~~a~vls~~l 570 (590)
..++++.+....+
T Consensus 125 ~~~~~~~~~~~~~ 137 (141)
T TIGR00880 125 ILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHhhc
Confidence 8877776666543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-07 Score=100.09 Aligned_cols=149 Identities=10% Similarity=0.111 Sum_probs=108.8
Q ss_pred chHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHH
Q 007766 382 NLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTT 458 (590)
Q Consensus 382 n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~ 458 (590)
...++.+++|.+... ...+++.+...++.+++|+++||++||+.+ ....++..+++++..... ...+++..
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV------IAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH------HhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455677778877554 366777788888999999999999987632 334444444444443332 23344433
Q ss_pred -HHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCC
Q 007766 459 -VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRD 537 (590)
Q Consensus 459 -~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~ 537 (590)
++.|++.|..+....+++.|+|. |+-++..|+..++..+|..+ +|.+.|.+.|..+
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~-~~~l~~~l~~~~g--------------------- 171 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST-LAPLNQYLFESFG--------------------- 171 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhC---------------------
Confidence 66789888776666778899994 88899999999999999886 5779999988554
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 538 QETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 538 ~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
||.+|.+.++++++++++.+++
T Consensus 172 -----------wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 172 -----------WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888776655444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.8e-06 Score=91.16 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=85.3
Q ss_pred HHHHHhcCccc-ccccccHHHHHHhCCChhhHHHHHHHHHHhhhccCccceeeeccc-----hHHHHHHHHHHH-HHHHH
Q 007766 23 MWIQSCAGIGY-LFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFVEILP-----VWSINLIGVLQN-FVGYG 95 (590)
Q Consensus 23 ~~i~l~~Gt~Y-~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~gi~~G~~~D~~g-----pr~~~~iG~~l~-~~GY~ 95 (590)
..+-++-|..+ ....-.+-|++++|+|.+|++.+.....+.-.+-+++|.+.|++| .|..++++.++. .+++.
T Consensus 32 ~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~ 111 (468)
T TIGR00788 32 LQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYG 111 (468)
T ss_pred HHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHH
Confidence 33344555552 233455668889999999998887777777778888999999998 688888888776 34432
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhh
Q 007766 96 LVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAG 155 (590)
Q Consensus 96 ~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~G 155 (590)
. +. ..++ .........++.+.+.+..+.++=.-.++..|++++...++...+++
T Consensus 112 ~----l~-~~~~-~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~ 165 (468)
T TIGR00788 112 L----LP-GKVS-SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWG 165 (468)
T ss_pred h----cc-cccc-hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHH
Confidence 2 11 1112 12222335667788888888888888999999555555555545555
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=102.36 Aligned_cols=151 Identities=11% Similarity=0.166 Sum_probs=118.0
Q ss_pred chHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHH
Q 007766 382 NLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTT 458 (590)
Q Consensus 382 n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~ 458 (590)
.+..+.+++|.+... ...+...+.+.++.+.+|+++||++||+. +.....+..++.++.... ....+.+.-
T Consensus 24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (485)
T TIGR00711 24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL------FLISTFAFTLGSLLCGVAPNLELMIIFR 97 (485)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH------HHHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 455667778876543 47889999999999999999999998663 244455555555444433 345688888
Q ss_pred HHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCC
Q 007766 459 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQ 538 (590)
Q Consensus 459 ~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (590)
.+.|++.|.......+++.|.+..|+-++..|+...+..+|..+ +|.++|.+.|..+
T Consensus 98 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~---------------------- 154 (485)
T TIGR00711 98 VIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL-GPTLGGWIIENYH---------------------- 154 (485)
T ss_pred HHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh-hhccHhHhccCcC----------------------
Confidence 99999999999999999999999999999999999999999876 6888888876433
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 539 ETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 539 ~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
++..|.+.+.+++++.++..+..
T Consensus 155 ----------w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 155 ----------WRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred ----------ceehhhhhhHHHHHHHHHHHHHc
Confidence 77888888888777776666544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=98.01 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
+++||.+++..++..-...++...+..+.++++.++.. ..++.+.+...+.-+.+|+++||++||+.+ ....
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence 57899999988887665555566666677777766543 467788899999999999999999998754 3333
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 437 VVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 437 ~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
.+..++.+...... . .++.-++.|++.|......-+++.|++..|+.++..|++.....+|..+ +|.++|.++|.
T Consensus 76 ~~~~~~~~~~~~~~-~-~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~-Gp~lgG~l~~~ 150 (393)
T PRK11195 76 GIKLLGCLLMLFGI-H-PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL-GTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33333333222211 1 2455578899999999999999999999999999999999998888776 79999999873
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=95.36 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=109.8
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTV 459 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~ 459 (590)
+..+.+++|.+... ...++..+...++.+.+|+++||++||+.+ .....+..++.++.... ....+++...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (398)
T TIGR00895 40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL------LWSILLFSVFTLLCALATNVTQLLILRF 113 (398)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 34455667766543 366778888999999999999999986532 33444444444443332 3446778889
Q ss_pred HHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCC
Q 007766 460 LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539 (590)
Q Consensus 460 liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.|++.|..+...+++++|.+..++-++..|+...+..+|..+ ++.+.+.+.|..+
T Consensus 114 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g----------------------- 169 (398)
T TIGR00895 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV-GGFLAGWLIPVFG----------------------- 169 (398)
T ss_pred HHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH-HHHHHHHHhhccc-----------------------
Confidence 9999999999999999999999999999999999999999876 6878888876443
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 540 ~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
++..|.+.+.++++..++..+
T Consensus 170 ---------~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 170 ---------WRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred ---------ceeehhhhhhHHHHHHHHHHH
Confidence 667788876666555554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=97.55 Aligned_cols=149 Identities=15% Similarity=0.235 Sum_probs=111.0
Q ss_pred HHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHH
Q 007766 384 GQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVL 460 (590)
Q Consensus 384 ~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~l 460 (590)
..+.+++|.+..+ ...++..+...++.+.+|+++||++||+.+ .+..++..++.++.... ....+.+.-.+
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL------PIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh------HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455677877654 478899999999999999999999997643 44445555554444332 34567788889
Q ss_pred HHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhH-hHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCC
Q 007766 461 VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG-VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539 (590)
Q Consensus 461 iG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~-~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (590)
.|++.|..+....++++|.+..|+-+...|+...+..+|..+ ++ .+.+.+.+..
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------------------------ 147 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELY------------------------ 147 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcC------------------------
Confidence 999999999999999999999999999999999999999886 46 3444443321
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 540 ~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
.++..|.+.+.++++..++.++..
T Consensus 148 --------~~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 148 --------SWHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred --------CchhHHHHHHHHHHHHHHHHheee
Confidence 277889888887777666665443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-05 Score=86.24 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHHHhcC--cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHH
Q 007766 14 NRWLVFVCSMWIQSCAG--IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQN 90 (590)
Q Consensus 14 ~RW~~l~as~~i~l~~G--t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~ 90 (590)
.|.+..++++.++.++. ..+..+.--+++-..+|=+ ++..+++++-.++.. .-++.|++.|.+|+|...++|.++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 34555555555544433 2222222234566667665 556667667667664 4678999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCC-CCchhhhhH
Q 007766 91 FVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKS-RGPVVGILK 151 (590)
Q Consensus 91 ~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~-RG~a~Gi~~ 151 (590)
.+|..+ ..... +.-.++...++.|.|.+......+. ...--|+| |+...++..
T Consensus 119 vvG~Iv-----~atA~--~~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 119 VVGSIV-----CATAQ--NMNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIAS 172 (599)
T ss_pred HhHHHH-----hhcCC--cHHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHHH
Confidence 999744 33333 3455666777777776655543333 33444864 776555444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.5e-07 Score=97.97 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=120.1
Q ss_pred HhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHH
Q 007766 355 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 432 (590)
Q Consensus 355 ~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l 432 (590)
...++++|+.+++..++.....-+...-+..+.++.+.+... ...+...+...++.+.+|+++||++||+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~----- 86 (417)
T PRK10489 12 LLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL----- 86 (417)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE-----
Confidence 445688898887774443332222222334445666655433 4778889999999999999999999987542
Q ss_pred HHHHHHHHHHHHHH-----Hhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHh
Q 007766 433 AVAQVVMAFALLYY-----AIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 506 (590)
Q Consensus 433 ~~~~~l~~~~~l~~-----~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~ 506 (590)
....+.+++.++. ... ....+++..++.|++.|.......+++.|.+..++.++..++...+..+|..+ ++.
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~ 164 (417)
T PRK10489 87 -LARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI-SPA 164 (417)
T ss_pred -ehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh-HHH
Confidence 1222222221111 111 22356677778899888888888888999999999999999998899998876 788
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 507 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 507 l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
++|.++|..+ ++..|.+.+.+++++.++.+
T Consensus 165 l~g~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 194 (417)
T PRK10489 165 LGGLLIAAGG--------------------------------VAWNYGLAAAGTFITLLPLL 194 (417)
T ss_pred HHHHHHHHHh--------------------------------hHHHHHHHHHHHHHHHHHHH
Confidence 9999988544 77888887777766655544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-07 Score=94.91 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhhhcccceeecchHH-HHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~-I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
++||++++.+++......++..-+.+ +.+++|.+... ...++..+...++.+.+|+++||++||+. +.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~ 74 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT------TTLSL 74 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH------HHHHH
Confidence 36899988888776666665555554 66788887654 47788999999999999999999998663 24555
Q ss_pred HHHHHHHHHHHhc--CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHH
Q 007766 437 VVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 501 (590)
Q Consensus 437 ~l~~~~~l~~~~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~ 501 (590)
+++.++.++.... ....+++.-.+.|+.. +.+....++++|.+..|+-++..++......+|..
T Consensus 75 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 140 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGG 140 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH
Confidence 5556555544433 3446777888889884 45677788999999999999988887744444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-05 Score=87.92 Aligned_cols=114 Identities=14% Similarity=-0.011 Sum_probs=66.3
Q ss_pred HHHHhCCChhhHHHH-HHHHHHhhhccCccceeeecc----ch-HHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHH
Q 007766 42 IKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEIL----PV-WSINLIGVLQNFVGYGLVWLIVTNRLPSL-PLWVLC 114 (590)
Q Consensus 42 Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~----gp-r~~~~iG~~l~~~GY~~~~l~~~g~i~s~-~~~~l~ 114 (590)
.-+.+|++...+.++ .++.-.-...-++-|.+.||. |. |.-+++|++..++++.++|.. -+..... ..|.+.
T Consensus 36 yt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-p~~s~~~~~~y~~~ 114 (460)
T PRK11462 36 YTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-PDLSMNGKMIYAAI 114 (460)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC-CCCCcchHHHHHHH
Confidence 346789999988885 556655556678999999974 65 355567888888887776642 2111111 123332
Q ss_pred HHHHH--hhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhh
Q 007766 115 IAIFV--GTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLS 157 (590)
Q Consensus 115 ~~~~l--~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLS 157 (590)
.+.+. +--.....| .++...+-.=|++|..+++.-..+--++
T Consensus 115 ~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG 158 (460)
T PRK11462 115 TYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAG 158 (460)
T ss_pred HHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 23222 111122223 3455555544889999888665443333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=95.74 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=102.6
Q ss_pred cCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHh
Q 007766 391 GYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-----WPGEIYVTTVLVGL 463 (590)
Q Consensus 391 g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-----~~~~l~~~~~liG~ 463 (590)
|.+..+ ..++...+...++.+.+|+++||++||+. +.+..++.+++.+.+... ....+++.-.+.|+
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~------l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi 132 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF------LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 132 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 666544 47889999999999999999999999763 244444444444433321 12345666778899
Q ss_pred hhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcc
Q 007766 464 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTC 543 (590)
Q Consensus 464 ~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 543 (590)
+.|..+.....++.|.|..|+-|+..|+...+..+|+.+.++.+...+.. ..
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~--------------------------- 184 (452)
T PRK11273 133 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-FN--------------------------- 184 (452)
T ss_pred HHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hc---------------------------
Confidence 99988888888899999999999999999899888875555533222221 11
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 544 LGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 544 ~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
-+|..|.+.+.++++..++.++..+
T Consensus 185 ----gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 185 ----DWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1889999988887776666655543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-06 Score=87.20 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=107.6
Q ss_pred HHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007766 26 QSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNR 104 (590)
Q Consensus 26 ~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~ 104 (590)
+.-++=.-.=|..+|.+.+..|.+.-|..+++...+.|..+ ...+|+..|+.|.|+-..+-....++- - .++|.
T Consensus 88 mad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~----~-~is~~ 162 (528)
T KOG0253|consen 88 MADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF----G-VISGA 162 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH----H-HhhcC
Confidence 33333334457789999999999999999999999999976 679999999999998665544432111 1 23555
Q ss_pred CCCchHHHHHHHHHHhhcCccccchhhHHHHHHhC-CC-CCCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHH
Q 007766 105 LPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNF-PK-SRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAV 181 (590)
Q Consensus 105 i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knF-P~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~ 181 (590)
.+ .+-.+|++-.+.|.|.+. +. ...+----| |. +|++-+=.. +++..+..+-..+.-.. +.-...+++|+..
T Consensus 163 sp--nf~~L~~f~~l~~~g~gg-~p-v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~ 237 (528)
T KOG0253|consen 163 SP--NFASLCVFRALWGFGVGG-LP-VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSS 237 (528)
T ss_pred CC--CeehhhHHHHHHhccCCC-cc-HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 43 444577776666666665 33 222333334 75 677766555 88888877666665554 5557888998888
Q ss_pred hhHHHHHhhheee
Q 007766 182 GPSIVVMAFMFIV 194 (590)
Q Consensus 182 ~~~~v~l~~~~~i 194 (590)
+|....+..++.+
T Consensus 238 ~pl~~~a~f~~w~ 250 (528)
T KOG0253|consen 238 TPLMFAARFLVWV 250 (528)
T ss_pred hHHHHHHHHHhhc
Confidence 8887766666554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.9e-07 Score=98.40 Aligned_cols=149 Identities=12% Similarity=0.181 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
+.++.+++.+++......+...-+.++.+++|.+..+ ..++++.+...++.+..|+++||++||+.+ .....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~ 93 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM------VISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHH
Confidence 4566677666654444444444456667778877654 478888999999999999999999986632 34444
Q ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 438 VMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 438 l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
+..++.++.... ....+++.-.+.|++.|+.+....+++.|.|-.|+-+.-.|+...+..+|..+ ++.+++.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~ 171 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV-AAQVYSLVVPVW 171 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccC
Confidence 444454443332 34568888899999999999999999999999999999999999999999876 788888887643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-05 Score=86.32 Aligned_cols=184 Identities=18% Similarity=0.239 Sum_probs=132.4
Q ss_pred CHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH--HhcCCcccc--hhHHHHhhhhhccccccchhhhhhhccCCc
Q 007766 352 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ--SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP 427 (590)
Q Consensus 352 t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~--s~g~~~~~~--~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~ 427 (590)
|++++-|.++.+...+.+++-. -|+..+..++.+.. .+|.++.+. ..-+..+....|-+++|++.||++.|.+
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~-dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-- 349 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYS-DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-- 349 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--
Confidence 4566667777777666655433 34444555555543 578877664 4456788999999999999999988632
Q ss_pred hhHHHHHHHHHHHHHHHHHH--------hcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhH
Q 007766 428 RPVAMAVAQVVMAFALLYYA--------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG 499 (590)
Q Consensus 428 R~~~l~~~~~l~~~~~l~~~--------~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g 499 (590)
|. ++.......++....+. ...+..+|+..+++|+..|+..+.-=++.+|+=-..+-+.-||+..+..=..
T Consensus 350 ~~-l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 350 RT-LLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred HH-HHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 11 22222222122222121 2234579999999999999999999999999998888999999999998888
Q ss_pred HHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 500 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 500 ~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
+++ +|.+.|.+-|.++ ..|..|.....+.++++++-..+.
T Consensus 429 s~l-GPll~g~i~~~tg-------------------------------~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 429 SWL-GPLLFGLITDATG-------------------------------SQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHH-HHHHHHHHHHHhC-------------------------------CchhHHHHHHHHHHHHHHHHhhcc
Confidence 887 7999999999887 278888888888888877765433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.8e-07 Score=95.50 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=96.3
Q ss_pred HHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHH
Q 007766 384 GQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVL 460 (590)
Q Consensus 384 ~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~l 460 (590)
..|.++.|.++.+ ...++..+...+|.+.+|+++||++||+.+ .+...+..++.++.... ....++++-.+
T Consensus 42 ~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 115 (426)
T PRK12307 42 YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM------MWSIVAYSVGTGLSGLASGVIMLTLSRFI 115 (426)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455677877654 467788899999999999999999986632 44555555554443332 34568888899
Q ss_pred HHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 461 VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 461 iG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
.|++.|..+.....++.|.|..|+-++..|+...+..+|..+ ++.+.+.+.|.
T Consensus 116 ~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~ 168 (426)
T PRK12307 116 VGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEA 168 (426)
T ss_pred HHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHccc
Confidence 999999999999999999999999999999999999999876 57677766553
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=94.08 Aligned_cols=169 Identities=18% Similarity=0.280 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhhhcccceeecchHH-HHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~-I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
++.++++..+....+. -++..-+.. +.+++|.+... ...++..+...+.++.+|.++||++||+. +....
T Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~------l~~~~ 83 (400)
T PRK11646 11 GKYFLLIDNMLVVLGF-FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM------IVTGM 83 (400)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH------HHHHH
Confidence 4544444444433332 222332332 34567776543 36667777888889999999999998663 34455
Q ss_pred HHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 437 VVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 437 ~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
.+..++++..... ....+++..++.|++.|.......+++.|.+..++.++.+|+......+|..+ +|.++|.+.+ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~g~l~~-~ 161 (400)
T PRK11646 84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI-GALLGSWLLQ-Y 161 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-h
Confidence 5555555444333 34467777888898888777788889999999999999999999999999876 7889998873 2
Q ss_pred hhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 516 AEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
+ ++..|.+.+..++++.++..+
T Consensus 162 g--------------------------------~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 162 D--------------------------------FRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred h--------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 2 888999988877776655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=97.72 Aligned_cols=151 Identities=12% Similarity=0.087 Sum_probs=114.9
Q ss_pred chHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHH
Q 007766 382 NLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTT 458 (590)
Q Consensus 382 n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~ 458 (590)
.+.+|.++++.+..+ ..++.+.+..+.+-+.+|+++||+|||+.+ .....+..++.++.... ....+.++-
T Consensus 28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l------~~~~~~~~~~~~~~~~a~~~~~li~~r 101 (495)
T PRK14995 28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL------MLGGTLFGLASLAAAFSPTASWLIATR 101 (495)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356677788776543 578889999999999999999999997743 44455555555444433 345677777
Q ss_pred HHHHhhhhccchhhHHHHHHhh-cccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCC
Q 007766 459 VLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRD 537 (590)
Q Consensus 459 ~liG~~yG~~~~l~P~i~ad~F-G~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~ 537 (590)
++.|++.|+.+...-.++.+.| ..|+-++-.|++.....+|..+ +|.++|.+.|..+
T Consensus 102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~-gp~lgg~l~~~~g--------------------- 159 (495)
T PRK14995 102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF-GPLVGGILLEHFY--------------------- 159 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC---------------------
Confidence 8999999887766666677777 6789999999999999999876 7989999987544
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 538 QETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 538 ~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
+|..|.+...++++++++..+..
T Consensus 160 -----------wr~~f~i~~~~~~~~~~l~~~~l 182 (495)
T PRK14995 160 -----------WGSVFLINVPIVLVVMGLTARYV 182 (495)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999998888887777666544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=97.20 Aligned_cols=122 Identities=19% Similarity=0.287 Sum_probs=92.3
Q ss_pred HHHhcCCccc--chhHHHHhhhhhccccccchhhh-hhhccCCchhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHH
Q 007766 387 CQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLV 461 (590)
Q Consensus 387 ~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~-l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~--~~~l~~~~~li 461 (590)
.+++|.++.. ..++.+.......-+.+|+++|| +|||+.+ ....+++.++++++.... +..++++-++.
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~------~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI------VLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH------HHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3457776554 36677777777778899999999 9998754 555666666665544332 33466788899
Q ss_pred HhhhhccchhhHHHHHHhhccc--chhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 462 GLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 462 G~~yG~~~~l~P~i~ad~FG~k--~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
|++.|...+..+++++|.|-.+ ..+.-|++.+++..+|+.+ +|.+.|.+-|..
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~-g~~l~g~l~~~~ 170 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI-SLSLAPVIADKF 170 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 9999999999999999999665 3466799999999999986 688888887643
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-06 Score=96.84 Aligned_cols=178 Identities=17% Similarity=0.113 Sum_probs=124.3
Q ss_pred hhcHHHHHHHHHHHhhhccc---ceee-cchHHHHHHhcCCccc-chhHHHHhhhhhccccccchhhhhhhccCCchhHH
Q 007766 357 LMKADFLLLFFSLVLASGSG---LTVI-DNLGQICQSLGYADTS-IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA 431 (590)
Q Consensus 357 l~~~~Fwll~~~~~~~~g~G---lm~i-~n~~~I~~s~g~~~~~-~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~ 431 (590)
.++++|+..+..+.+...+. +..- +-+.+|.+++|.++.. ..+...++.++.+-.+.|-+||.+|||+ +
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~------~ 110 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY------F 110 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchH------H
Confidence 46788888877665544333 2221 2356788888877654 4677788899999999999999999866 4
Q ss_pred HHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHH
Q 007766 432 MAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG 510 (590)
Q Consensus 432 l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~ 510 (590)
+....++.++|+.+.+... ...+..+.++.|+++|.... ....++|.--.|+-+.-+++......+... .++.++..
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~-~~~~ia~~ 188 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTW-ISPLIAQL 188 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhc-ccHHHHHH
Confidence 5777888888877766544 34688899999999988874 566799999888776655555544433332 24534333
Q ss_pred HHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007766 511 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT 574 (590)
Q Consensus 511 iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~ 574 (590)
++. ++ -+|+.|++....+.+++++..+.+++.
T Consensus 189 ~~~-~~-------------------------------~WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 189 FAA-HS-------------------------------GWRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred hcc-CC-------------------------------CcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 321 11 289999999999999988887665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=91.80 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=106.2
Q ss_pred hhhcHHHHHHHHHHHhhhcccceeecchHH-HHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHH
Q 007766 356 ALMKADFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 432 (590)
Q Consensus 356 ~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~-I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l 432 (590)
...+..+|.+++..++....--++..-+.. +.+++|.+... ..+++..+...++.+.+|+++||++||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l------ 84 (392)
T PRK12382 11 SSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA------ 84 (392)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH------
Confidence 455677887777665554432233333333 45677877654 488999999999999999999999997632
Q ss_pred HHHHHHHHHH---HHHHHh------cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHh
Q 007766 433 AVAQVVMAFA---LLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 503 (590)
Q Consensus 433 ~~~~~l~~~~---~l~~~~------~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~ 503 (590)
....++..++ +.+... .....+++.-.+.|++.+.......+.+.|.+..|+.++..|+..++...|..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~- 163 (392)
T PRK12382 85 LQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA- 163 (392)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH-
Confidence 2222222222 111111 112357778889999999888888889999999999999999999888888765
Q ss_pred hHhHHHHHHhhh
Q 007766 504 SGVIASGIYDYY 515 (590)
Q Consensus 504 ~~~l~g~iyd~~ 515 (590)
+|.+++.+++..
T Consensus 164 g~~~~~~l~~~~ 175 (392)
T PRK12382 164 GAPLGLLLHSHF 175 (392)
T ss_pred HHHHHHHHHhcc
Confidence 687888887643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=94.27 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHH-HHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA 435 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~ 435 (590)
||+||++....++....--++..-+.... +.+|.+..+ ..+++..+...++++.+|+++||++||+.+- ...+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~---~~~~~ 77 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLL---WIISG 77 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH---HHHHH
Confidence 68999987665554443222333343333 456776654 4899999999999999999999999977431 00111
Q ss_pred HHHHHHHHHHHHhcC------chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHH
Q 007766 436 QVVMAFALLYYAIGW------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS 509 (590)
Q Consensus 436 ~~l~~~~~l~~~~~~------~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g 509 (590)
.++.....+.+.... ...+.+..++.|++++...+.....+.|. .|+.+.+||.......+|..+ +|.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~-g~~~~g 154 (396)
T TIGR00882 78 LLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV--SRNSNFEYGKARMFGCVGWAL-CASIAG 154 (396)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh--hhhcccccchhhhhcccHHHH-HHHHHh
Confidence 111111111111111 11234456677888888888888777775 355567788777777787765 677888
Q ss_pred HHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 007766 510 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 568 (590)
Q Consensus 510 ~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~ 568 (590)
.+++. + ++..|.+.+.++++..++.+
T Consensus 155 ~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 155 ILFSI-D--------------------------------PQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred hhhcc-C--------------------------------chHHHHHHHHHHHHHHHHHH
Confidence 77752 2 67789888888777765554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=91.67 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
...|.+...+.+..+.+ +..+.+.++.+++|.+..+ ..+++..+...++.+.+|.+.||++||+.. ....+
T Consensus 14 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l------~~~~~ 86 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDG-LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM------MIGLL 86 (402)
T ss_pred hhhHHHHHHHHHHHhhh-hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHH
Confidence 34444444455555555 3444567777888887654 478899999999999999999999997633 33333
Q ss_pred HHHHHHHHH---Hhc--CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 438 VMAFALLYY---AIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 438 l~~~~~l~~---~~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
+..++.++. ... ....+++.-.+.|++++.......+.+.|.+..|+-|+..|+...+..+|..++++.+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334333222 121 233556677777888887766667778899999999999999999999886445787888888
Q ss_pred hhhh
Q 007766 513 DYYA 516 (590)
Q Consensus 513 d~~~ 516 (590)
|..+
T Consensus 167 ~~~g 170 (402)
T TIGR00897 167 PAFG 170 (402)
T ss_pred cccc
Confidence 7544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-06 Score=95.48 Aligned_cols=140 Identities=18% Similarity=0.309 Sum_probs=99.3
Q ss_pred HhcCCccc--chhHHHHhhhhhccccccchhhhh-hhccCCchhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHh
Q 007766 389 SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGL 463 (590)
Q Consensus 389 s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l-~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~--~~~l~~~~~liG~ 463 (590)
.+|.++.+ ..++.+.+...++.+.+|+++||+ |||+.+ .+..++++++++++.... +..++++..++++
T Consensus 39 ~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i------liG~il~~lg~lll~~~~~~~~~~~l~l~li~i 112 (493)
T PRK15462 39 QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV------MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVC 112 (493)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH------HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 45766543 367788888899999999999999 887632 555666666665554322 2346666667778
Q ss_pred hhhccchhhHHHHHHhhccc--chhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCC
Q 007766 464 SYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 541 (590)
Q Consensus 464 ~yG~~~~l~P~i~ad~FG~k--~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (590)
+.|...+..+++++|.|..+ .-.+-+++.+.+..+|+.+ +|.+.|.+.+..+
T Consensus 113 G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i-ap~l~g~L~~~~G------------------------- 166 (493)
T PRK15462 113 GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII-APIACGYAQEEYS------------------------- 166 (493)
T ss_pred hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH-HHHHHHHHHhhhC-------------------------
Confidence 88888888899999999764 3455567666666678875 7888888866443
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHH
Q 007766 542 TCLGSICYSITCGIMAGLCIIAMVMS 567 (590)
Q Consensus 542 ~C~G~~Cy~~~F~i~~~~~~~a~vls 567 (590)
|+..|.+.+...+++++..
T Consensus 167 -------w~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 167 -------WAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred -------hHHHHHHHHHHHHHHHHHH
Confidence 8888988766555555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=91.40 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=83.2
Q ss_pred chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cC-c--hhHHHHHHHHHhhhhccchhh
Q 007766 397 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW-P--GEIYVTTVLVGLSYGAHWAIV 472 (590)
Q Consensus 397 ~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~-~--~~l~~~~~liG~~yG~~~~l~ 472 (590)
...++..+...++.+.+|+++||+|||+.+ .+..++..++.++... .. . ..+.+.-.+.|++.|..+...
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSL------LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHH------HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence 478899999999999999999999986532 3444444444444322 22 2 268888999999999999999
Q ss_pred HHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHH
Q 007766 473 PAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA 508 (590)
Q Consensus 473 P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~ 508 (590)
.++++|.+..|+-+...++...+..+|..+ ++.+.
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~ 183 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFG 183 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999886 57555
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-05 Score=85.81 Aligned_cols=124 Identities=19% Similarity=0.099 Sum_probs=91.9
Q ss_pred cccccHHHH-HHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 007766 35 FGSISPVIK-AHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWV 112 (590)
Q Consensus 35 fSvys~~Lk-~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~ 112 (590)
-+.|+.... +.++.+....++......+|..+ .++.|.+.|++|+|.+++++.++..++-.+ +... ++++.
T Consensus 101 ~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~-----~a~a--~~~~~ 173 (521)
T KOG0255|consen 101 SSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGIL-----TAFA--PNYWM 173 (521)
T ss_pred CCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHH-----HHHh--CcHHH
Confidence 345555554 56777777777777777777765 578999999999999999999887666422 3332 45788
Q ss_pred HHHHHHHhhcCccccchhhHHHHHHhC-CCCCCchhhhhHhhhhhhHHHHHHHHH
Q 007766 113 LCIAIFVGTNGETYFNTAALVSCVQNF-PKSRGPVVGILKGFAGLSGAILTQIYI 166 (590)
Q Consensus 113 l~~~~~l~G~g~~~~~taal~t~~knF-P~~RG~a~Gi~~a~~GLSa~i~s~i~~ 166 (590)
++++=++.|.+.+..++.+....+.++ |++|+.+..+ ..++-..+.+......
T Consensus 174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a 227 (521)
T KOG0255|consen 174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA 227 (521)
T ss_pred HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999 5779999888 5555555544444333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.4e-05 Score=84.70 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=66.5
Q ss_pred HhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHH-HHhcCCCCchHHHHHHHHHHhhc
Q 007766 45 HMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWL-IVTNRLPSLPLWVLCIAIFVGTN 122 (590)
Q Consensus 45 ~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l-~~~g~i~s~~~~~l~~~~~l~G~ 122 (590)
++.=|...++++.++..+-. .+++++|.+.||+.+|.+++..-++..+....+.. ...+. .+.|+++.+.++.|.
T Consensus 39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~---~~~~~Ll~~~fl~g~ 115 (524)
T PF05977_consen 39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL---LSPWLLLILTFLLGI 115 (524)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHH
Confidence 34445556666666666665 46999999999999999999988877665544333 33443 346888888888898
Q ss_pred CccccchhhHHHHHHhCCCCC
Q 007766 123 GETYFNTAALVSCVQNFPKSR 143 (590)
Q Consensus 123 g~~~~~taal~t~~knFP~~R 143 (590)
+.++.+.+-...--+=-|+++
T Consensus 116 ~~a~~~PA~~A~ip~lV~~~~ 136 (524)
T PF05977_consen 116 GSAFFNPAWQAIIPELVPKED 136 (524)
T ss_pred HHHHHHHHHHHHHHHhccHhh
Confidence 888876655555545557644
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-06 Score=93.61 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhhccccee---ec-chHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTV---ID-NLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA 433 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~---i~-n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~ 433 (590)
+.||..+...+++...-.+. ++ -..+|.+++|.++.+ ...+.+.+...++.+.+|+++||++||+.+ .
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l------~ 98 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL------P 98 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH------H
Confidence 34565555554444421111 11 244566778877654 478889999999999999999999998754 2
Q ss_pred HHHHHHHHHHHHH-----Hh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhH
Q 007766 434 VAQVVMAFALLYY-----AI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI 507 (590)
Q Consensus 434 ~~~~l~~~~~l~~-----~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l 507 (590)
+...+..+..+.+ .. .....+.+.-.+.|++.|..+.....+++|+|..|+.|+..|+...+..+|..+ ++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i 177 (467)
T PRK09556 99 FLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGV 177 (467)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHH
Confidence 2222222221111 11 223467777788899999999999999999999999999999999999999876 5656
Q ss_pred HHHHHh
Q 007766 508 ASGIYD 513 (590)
Q Consensus 508 ~g~iyd 513 (590)
...+.+
T Consensus 178 ~~~~~~ 183 (467)
T PRK09556 178 ALWGAN 183 (467)
T ss_pred HHHHHH
Confidence 655544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=81.62 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhhhhccchhhHHHHHHhhc--ccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCC
Q 007766 452 GEIYVTTVLVGLSYGAHWAIVPAAASELFG--LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN 529 (590)
Q Consensus 452 ~~l~~~~~liG~~yG~~~~l~P~i~ad~FG--~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~ 529 (590)
....+..+++|++|....++==+++++.=- .++.|...|++.....++-.+. ....|.+.+..+.+
T Consensus 381 ~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~-sl~~g~~~~~~g~~----------- 448 (477)
T TIGR01301 381 ASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIV-SLGSGPWDQLFGGG----------- 448 (477)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHcCCC-----------
Confidence 457788889999999999988888888876 4789999999999999888874 54666644444411
Q ss_pred CCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007766 530 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK 575 (590)
Q Consensus 530 ~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r 575 (590)
-..+|.+.+...+++.++++++.-|.|
T Consensus 449 -------------------~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 449 -------------------NLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred -------------------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 456788999999999999988776654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.8e-06 Score=91.17 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=100.2
Q ss_pred chHHHHHHhcCCccc-c-----hh----HHHHhhhhh-ccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC
Q 007766 382 NLGQICQSLGYADTS-I-----YV----SMISIWNFL-GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW 450 (590)
Q Consensus 382 n~~~I~~s~g~~~~~-~-----~V----sl~si~N~~-GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~ 450 (590)
+.+.|.+++|..... . -| -+++++..+ |=.+..+++|++||++.. ...+.++.+.++.++..-
T Consensus 326 ~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq------~~GF~~~~i~~~~~~~~y 399 (538)
T KOG0252|consen 326 FQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ------LMGFFIMTIFFFVIAGPY 399 (538)
T ss_pred HHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH------HhhHHHHHHHHHHHcCCc
Confidence 677788888765432 1 12 256677777 889999999999998732 555666666555544321
Q ss_pred c-----hhHHHH--HHHHHhhhhc--cchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhh
Q 007766 451 P-----GEIYVT--TVLVGLSYGA--HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 521 (590)
Q Consensus 451 ~-----~~l~~~--~~liG~~yG~--~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~ 521 (590)
. ..+.+. ....-.+||= ...+.| +|.|-.+-=|+-||+.-...=.|+.+ +...+..+-|++- ..
T Consensus 400 ~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivp---aE~FParvR~t~hGIsAA~GK~GAiv-g~~~F~~~t~~~y--p~- 472 (538)
T KOG0252|consen 400 NQLENTIGFVVLYSLTFFFGNFGPNATTFIVP---AEIFPARVRSTCHGISAASGKAGAIV-GAFGFLYLTDHNY--PP- 472 (538)
T ss_pred ccccccCceeehHHHHHHHHhcCCCceeEEee---hhhchHHHhhhhhhHHHHhccchHHH-HHHHhhHhhhccC--Cc-
Confidence 1 111111 1111224443 333444 68999999999999988777788876 4545554444331 10
Q ss_pred hhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007766 522 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS 576 (590)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r~ 576 (590)
.- -++.+|.+.++++.++.+.++++-.-++|
T Consensus 473 --------------~~----------g~~~v~~i~~~~~~~gi~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 473 --------------NI----------GVRNVFIILAGCMLLGILFTLLIPETKGK 503 (538)
T ss_pred --------------cc----------cchHHHHHHHHHHHHhHheeEEeeccccc
Confidence 00 28999999999999999999987733333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=82.68 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHH--HHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQI--CQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV 434 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I--~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~ 434 (590)
.|.||+++++..+-.-+=--.| .++|+ .+..|+++.+ ..-|+.-.-+..---+.|.++||.||+- |++.-
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi-~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----~wv~~ 336 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFI-TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----WWVAS 336 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----hhHHH
Confidence 3789999988665432221222 23343 2346777643 2444444444555678899999999855 34455
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhc----cchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHH
Q 007766 435 AQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGA----HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG 510 (590)
Q Consensus 435 ~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~----~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~ 510 (590)
+.++...+|..+.++.-. =|++..+.|++|-. .|...|.++.|. ..|+-||++..-.-+|-.+ .|.++|.
T Consensus 337 a~~~tl~~H~~l~Ft~ls-Py~~m~~lGLsysllAcslWP~va~~vpE~----qLGTaygf~qsIqNLgla~-i~Iiag~ 410 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFTFLS-PYTSMTFLGLSYSLLACSLWPCVASLVPEE----QLGTAYGFIQSIQNLGLAF-IPIIAGF 410 (459)
T ss_pred HHHHHHHHhhhHHhhhcc-HHHHHHHHhhhHHHHHHHHhhhhhhhCCHH----HhcchHHHHHHHHhhhhhH-Hhhhhhe
Confidence 666777788766655422 46777788888864 577777887775 7899999998887887654 6889999
Q ss_pred HHhhhh
Q 007766 511 IYDYYA 516 (590)
Q Consensus 511 iyd~~~ 516 (590)
+.|..+
T Consensus 411 i~d~~g 416 (459)
T KOG4686|consen 411 IADGDG 416 (459)
T ss_pred eecCCC
Confidence 998765
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.3e-06 Score=88.25 Aligned_cols=147 Identities=12% Similarity=0.161 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhhccccee--ecc-hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTV--IDN-LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV 434 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~--i~n-~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~ 434 (590)
+.-|++...++++....+++ ++- +.+|.++++.++.+ ..+++..+...++-+..|+++||+|||+.+ ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l------~~ 79 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV------AI 79 (393)
T ss_pred chHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH------HH
Confidence 44577777777766655444 222 33455567777654 478888899999999999999999997743 56
Q ss_pred HHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHh
Q 007766 435 AQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 513 (590)
Q Consensus 435 ~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd 513 (590)
..++.+++.++.... ....++++-++.|++.|......+.++.|.|. ++.+.-.|+...+..+|..+ ++.+.+.+.+
T Consensus 80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-g~~~~~~l~~ 157 (393)
T PRK09705 80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL-GAAITPWLVQ 157 (393)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 666666666655543 34578888999999999999999999999995 77899999988777777765 5667766665
Q ss_pred h
Q 007766 514 Y 514 (590)
Q Consensus 514 ~ 514 (590)
+
T Consensus 158 ~ 158 (393)
T PRK09705 158 H 158 (393)
T ss_pred h
Confidence 4
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=95.49 Aligned_cols=171 Identities=12% Similarity=0.134 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhhhcccceeecch--HHHHHHhcCCcccc-hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNL--GQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~--~~I~~s~g~~~~~~-~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
++++++...+.+...+|.++.-++ .++.+++|++..++ .++-....-...-+.+|+++||+|+|+ .+.+..
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~------vllig~ 98 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRP------IFVLSM 98 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHH
Confidence 455666666666666777776555 55666778876543 111122222345557899999999865 335666
Q ss_pred HHHHHHHHHHHhc-------CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHH
Q 007766 437 VVMAFALLYYAIG-------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS 509 (590)
Q Consensus 437 ~l~~~~~l~~~~~-------~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g 509 (590)
++..+++++.... ....+++.-++.|++-|..+......+.++| +++-|.-.|++..+.++|+.++++ +..
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gLGsaI~~~-l~~ 176 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGLGSAILGS-IQL 176 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6667776655543 2345677777888888888888888999999 688899999999999999988766 444
Q ss_pred HHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 510 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 510 ~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
.+++ +. ++..|++.+.+.++..++.+++.
T Consensus 177 ~l~~-~~--------------------------------~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 177 AFFS-DN--------------------------------TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHH-Hh--------------------------------HHHHHHHHHHHHHHHHHHHHhhe
Confidence 4443 11 55677887777777666665544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.5e-06 Score=100.14 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=109.4
Q ss_pred HhhhcHHHHHHHHHHHhhhcccceeecchHHHH-HHhcCCccc----chhHHHHhhhhhccccccchhhhhhhccCCchh
Q 007766 355 QALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTS----IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 429 (590)
Q Consensus 355 ~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~~~----~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~ 429 (590)
+.+++.+|+.+++..++......++..-+.... ...+.+... ...+++.+...++.+.+|+++||++||+.+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l--- 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI--- 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH---
Confidence 578889999999888876554443333333333 233333222 356678888899999999999999997633
Q ss_pred HHHHHHHHHHHHHH---HHH-HhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhH
Q 007766 430 VAMAVAQVVMAFAL---LYY-AIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG 505 (590)
Q Consensus 430 ~~l~~~~~l~~~~~---l~~-~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~ 505 (590)
.+..++.++.. .+. .......+++.-++.|++.|.......++++|++..++.+...|+..++..+|..+ ++
T Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l-g~ 156 (1146)
T PRK08633 81 ---RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA-GT 156 (1146)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH-HH
Confidence 22222211111 111 12234568888889999999999999999999999999999999999999998875 78
Q ss_pred hHHHHHHhh
Q 007766 506 VIASGIYDY 514 (590)
Q Consensus 506 ~l~g~iyd~ 514 (590)
.++|.+.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 899988875
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=8e-06 Score=87.74 Aligned_cols=149 Identities=10% Similarity=0.042 Sum_probs=106.3
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTV 459 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-~~~~~l~~~~~ 459 (590)
+.++.+++|.++.+ ...+.+.+...++.+.+|+++||++||+.. .........+.+.... .....+.+.=.
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL------FGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44566777877654 477888999999999999999999986522 2222222222211122 23456888888
Q ss_pred HHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCC
Q 007766 460 LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539 (590)
Q Consensus 460 liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.|++.|...... ..++|+|-.|+-++..++...+..+|..+ ++.+.+.+.+..+
T Consensus 88 l~G~g~~~~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g----------------------- 142 (368)
T TIGR00903 88 LAALGQPFLLNAF-APAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG----------------------- 142 (368)
T ss_pred HHHhHhHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc-----------------------
Confidence 8899988654333 44589999999999999999999999987 6877777765332
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 540 ~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
+|..|.+.+.++++..++..+..
T Consensus 143 ---------Wr~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 143 ---------LQLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999998888877766655443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=87.71 Aligned_cols=176 Identities=18% Similarity=0.115 Sum_probs=114.7
Q ss_pred HHHHHHHHhhhcccceeecchHH-HHHHh--------cCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHH
Q 007766 363 LLLFFSLVLASGSGLTVIDNLGQ-ICQSL--------GYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA 431 (590)
Q Consensus 363 wll~~~~~~~~g~Glm~i~n~~~-I~~s~--------g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~ 431 (590)
.++..+..+..+-...+++...+ +.+.. +.++.. ..+++..+...+|-+++|+++||+|||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~----- 88 (479)
T PRK10077 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL----- 88 (479)
T ss_pred HHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-----
Confidence 33333444555555666665543 44433 333222 478899999999999999999999997743
Q ss_pred HHHHHHHHHHHHHHHHhc----------C---chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhh
Q 007766 432 MAVAQVVMAFALLYYAIG----------W---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA 498 (590)
Q Consensus 432 l~~~~~l~~~~~l~~~~~----------~---~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~ 498 (590)
.+...++.++.+..... . ...+.++-++.|++.|+.+...+++++|++..|+-|.-.|+...+..+
T Consensus 89 -~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 89 -KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred -HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 33334444443322211 1 124667789999999999999999999999999999999999999899
Q ss_pred HHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 499 GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 499 g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
|..+ ++.+.+.+.+..... .. +..-+|..|.+.+...++..++.++
T Consensus 168 G~~~-~~~~~~~~~~~~~~~-----------------------~~-~~~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 168 GQLV-VYFVNYFIARSGDAS-----------------------WL-NTDGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred HHHH-HHHHHHHHhccCccc-----------------------cc-ccCChHHHHHHHHHHHHHHHHHHHc
Confidence 8876 554433332211100 00 0113899999887777666554433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=85.26 Aligned_cols=125 Identities=13% Similarity=0.168 Sum_probs=93.6
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVL 460 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~l 460 (590)
+.++.+++|.+... ...++..+...++.+.+|+++||++||+.. .+...+..++.+.........+++..++
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV------AAGLLLIAAGILIRSAPGTALLFAGTAL 96 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH------HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34566777877654 478899999999999999999999987642 2333333344333323334567788888
Q ss_pred HHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 461 VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 461 iG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
.|++.|......|.++.|.| .++-++..|+...+..+|..+ ++.+.+.+.|..
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~~ 149 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMALMGGAAL-AAAATVPLAQHS 149 (355)
T ss_pred HHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 99999999999999999999 578899999998888888876 576777776643
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-06 Score=93.05 Aligned_cols=161 Identities=7% Similarity=-0.027 Sum_probs=117.4
Q ss_pred HHhcCcccccccccHHHHHHhCCChhh-HHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 007766 26 QSCAGIGYLFGSISPVIKAHMGYNQRQ-VSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTN 103 (590)
Q Consensus 26 ~l~~Gt~Y~fSvys~~Lk~~l~~sq~~-~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g 103 (590)
....=---..|+-.|.|++.+|+|.+| .+.+..+...+= ..-+++|++.||+|+|.++.++.+...+...++-+
T Consensus 36 GF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f---- 111 (511)
T TIGR00806 36 GFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL---- 111 (511)
T ss_pred HHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH----
Confidence 333334456677788999999999999 666644444443 35789999999999999999999876666554333
Q ss_pred CCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHH--HH
Q 007766 104 RLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIF--LV 179 (590)
Q Consensus 104 ~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fll--fl 179 (590)
.. +++.+.+.-++-|.+.+... +......+||| ++|++++|+.-++.-+|.++-.++...+ .-+-..|.. .+
T Consensus 112 -a~--Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~I 187 (511)
T TIGR00806 112 -GT--SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNII 187 (511)
T ss_pred -HH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 22 36677777777788888887 99999999998 5799999999999999988888776655 223333333 35
Q ss_pred HHhhHHHHHhhheee
Q 007766 180 AVGPSIVVMAFMFIV 194 (590)
Q Consensus 180 a~~~~~v~l~~~~~i 194 (590)
++....++++.++++
T Consensus 188 sl~s~~~a~~~a~~L 202 (511)
T TIGR00806 188 SLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555666666666655
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=86.57 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=89.6
Q ss_pred HHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHH---HHhcC------chhH
Q 007766 386 ICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY---YAIGW------PGEI 454 (590)
Q Consensus 386 I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~---~~~~~------~~~l 454 (590)
+.+++|.++.. ...++..+...++.+.+|.++||++||+.+ ....++..++.+. ..... ...+
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFGLCGCALSGLLYLLAGLLAAWPVLSLLLL 115 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence 45667776654 477889999999999999999999998754 3333333222211 11111 1256
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 455 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 455 ~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
++.-.+.|++.|.......+.+.|.+..|+.++..|+...+..+|..+ ++.+++.+.+.
T Consensus 116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l~~~l~~~ 174 (399)
T PRK05122 116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI-GAPLGVLLYHW 174 (399)
T ss_pred HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH-HHHHHHHHHHc
Confidence 777889999999998888899999999999999999888887777665 67788888764
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=88.66 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=97.8
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTV 459 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~ 459 (590)
+..+.+++|.+..+ ...++..+...+|.+++|+++||++||+.. ....++..++.++.... ....+++.-.
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~------~~~~~~~~~~~~~~~~~~s~~~l~~~r~ 132 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS------AFLLMLTAPAVFCMSLVSSATGFIAVRF 132 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34556678876654 355677778889999999999999986532 33334444444333332 3445666677
Q ss_pred HHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCC
Q 007766 460 LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539 (590)
Q Consensus 460 liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.|++.|... .....++|+|-.|+-|.-.|+......+|+.+ ++.+.+.+.+.-...
T Consensus 133 l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~-~~~~~~~i~~~~~~~--------------------- 189 (476)
T PLN00028 133 FIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV-TQLLMPLVFPLIKDA--------------------- 189 (476)
T ss_pred HHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc---------------------
Confidence 8888877643 34567899998888898888876544444443 333333333321100
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 540 ~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
.|.+..-+|.+|.+.+.++++..++..++
T Consensus 190 --~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 190 --GAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred --CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00011139999999999887776666544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=85.76 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
++++|++++..++....-..+..-+.++.+++|.++.+ ..++...+.+.++.+.+|+++||+|||+.. .+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~------~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY------YLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHH
Confidence 56788888877665443333344566677788876544 488899999999999999999999997643 3344
Q ss_pred HHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 437 VVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 437 ~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
.+..++.+.... .....+.++-++.|++.|..+....+.+.|.+-.++-++.+|+...+..+|..+ ++.+.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~ 156 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL-GQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccc
Confidence 444444443333 234567778889999999888877777888887888899999998888888876 67777776653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-05 Score=86.45 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=119.0
Q ss_pred hhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHH
Q 007766 357 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA 433 (590)
Q Consensus 357 l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~ 433 (590)
+..+.+|+-++.|.++-..=.+.---..++.+ +++++..+ ..+++..+.-.++|+..|.+.||+|.|+.. .
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~------~ 104 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT------V 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------H
Confidence 44467787777765544322222222333333 56777654 478889999999999999999999976532 3
Q ss_pred HHHHHHHHHHHHHHh------cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHH----hhhhhHHHHh
Q 007766 434 VAQVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT----LASPAGSLIF 503 (590)
Q Consensus 434 ~~~~l~~~~~l~~~~------~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~----~a~~~g~~i~ 503 (590)
+..++..+..++... .....+++.-++.|++ |+.|...-..++++|-.|+.|+..|+.. ++..++.++
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l- 182 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV- 182 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH-
Confidence 333333444433332 2345788889999998 8999999999999998888999999884 444555454
Q ss_pred hHhHHH-HHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 504 SGVIAS-GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 504 ~~~l~g-~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
.|.+.+ .+++..+.+.. . ... -+..-.+.++.+...+++++.++.+++.
T Consensus 183 ~p~~i~~~l~~~~G~~~~-----------~-----~~~---g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 183 APLVIFVPVFAFLGVNGV-----------P-----QAD---GSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred HHHHHHHHHHHHhccccc-----------c-----ccc---cchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 343332 34444331110 0 000 0123478888888888888877777653
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=87.67 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=106.1
Q ss_pred HHHHHhcCC---cc--cchhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHH
Q 007766 385 QICQSLGYA---DT--SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTT 458 (590)
Q Consensus 385 ~I~~s~g~~---~~--~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~ 458 (590)
.|.++.+.+ +. ....+++.+...+|.+++|.++||+|||+. +.+..++..++.++.... ....+.+.-
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV------LLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH------HHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 344555554 22 247889999999999999999999999653 244445555554444333 345688888
Q ss_pred HHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCC
Q 007766 459 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQ 538 (590)
Q Consensus 459 ~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (590)
.+.|++.|+.+.+..++++|++..|+-+...++...++.+|..+ ++.+++.+.+
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~------------------------- 241 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-LPLVAYFIPD------------------------- 241 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH-HHHHHHHhhH-------------------------
Confidence 99999999999999999999999999999999988888888765 5755543321
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 539 ETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 539 ~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
+|..|.+.+..+++..++.++
T Consensus 242 ----------wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 242 ----------WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHh
Confidence 788888888887777666543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=98.25 Aligned_cols=160 Identities=9% Similarity=0.015 Sum_probs=107.1
Q ss_pred HHhhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCc----c---cchhHHHHhhhhhccccccchhhhhhhccC
Q 007766 354 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYAD----T---SIYVSMISIWNFLGRVGGGYFSEAIVRKFA 425 (590)
Q Consensus 354 ~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~----~---~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~ 425 (590)
++++++++|+.+|+..+++...--++-..+..+.. .+..+. . .+..+++.+...+.-+++|+++||++||+.
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 35789999999988877755432222222222211 221111 1 124445666777888899999999999763
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhH
Q 007766 426 YPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG 505 (590)
Q Consensus 426 ~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~ 505 (590)
+. . ...+..+...++.+.+.......+++..++.|++.+..+...-+++.|+|..++.+...|++..+..+|..+ +|
T Consensus 85 ~~-~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i-gp 161 (1140)
T PRK06814 85 AK-I-LKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL-GT 161 (1140)
T ss_pred HH-H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH-HH
Confidence 21 1 111111111222122222345578999999999999999999999999999999999999999999999986 79
Q ss_pred hHHHHHHhhhh
Q 007766 506 VIASGIYDYYA 516 (590)
Q Consensus 506 ~l~g~iyd~~~ 516 (590)
.++|.+.+..+
T Consensus 162 ~l~g~l~~~~~ 172 (1140)
T PRK06814 162 IIGGLATISGN 172 (1140)
T ss_pred HHHHHHHhccc
Confidence 89999987544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-05 Score=86.58 Aligned_cols=163 Identities=10% Similarity=0.100 Sum_probs=91.1
Q ss_pred hcCcccccccccHHH-HHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHH-HHHHHHHHHHhcC
Q 007766 28 CAGIGYLFGSISPVI-KAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNF-VGYGLVWLIVTNR 104 (590)
Q Consensus 28 ~~Gt~Y~fSvys~~L-k~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~-~GY~~~~l~~~g~ 104 (590)
.....|.+..|.|.. ++.+|++..+...+.....+|..+ .+++|++.||+|+|.++.++.++.. .++.+.... ..
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~- 339 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-NS- 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hC-
Confidence 345667788888885 467899988766665566666654 5678999999999999988886433 333322221 21
Q ss_pred CCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHHHHh-cC-ChhhHHHHHHH
Q 007766 105 LPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIYIMI-SA-NETSLIFLVAV 181 (590)
Q Consensus 105 i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~-~~~~fllfla~ 181 (590)
.+.+++....++.|.+.+...........+.||. .||++.|+.-...-+.+.+...+...+ .. +......++..
T Consensus 340 ---~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~ 416 (490)
T PRK10642 340 ---NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLM 416 (490)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 1233333333333332222222222333457985 599999976555444555544444433 21 11122222334
Q ss_pred hhHHHHHhhheeee
Q 007766 182 GPSIVVMAFMFIVR 195 (590)
Q Consensus 182 ~~~~v~l~~~~~ir 195 (590)
.+.+++++..++++
T Consensus 417 ~~~~i~~~~~~~~p 430 (490)
T PRK10642 417 VVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHhc
Confidence 45566666666553
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.6e-05 Score=82.39 Aligned_cols=173 Identities=14% Similarity=0.189 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
..-|.+-+.-++......+..+-+.+|+++++.+... ..||+++..-.+|-+.-..++||+-||+ .+....+
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~------lLl~~l~ 86 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR------LLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH------HHHHHHH
Confidence 4456666666777777888899999999999988765 4899999999999999999999998866 3456667
Q ss_pred HHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 438 VMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 438 l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+.+++.++.+... ...+.++=++.|++-|..|++.-++.+|+=.+++-++--++++++..++-.+ +.+++.++=|.-+
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~-GvPLGt~ig~~~G 165 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL-GVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH-hccHHHHHHHHhh
Confidence 7777777666543 4578999999999999999999999999999999999999999999998876 6779988888766
Q ss_pred hhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 517 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
+|.+|.+.+++++++.+.-+...
T Consensus 166 --------------------------------WR~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 166 --------------------------------WRATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999988777666444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.5e-05 Score=80.18 Aligned_cols=146 Identities=11% Similarity=-0.023 Sum_probs=95.7
Q ss_pred HHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHh
Q 007766 387 CQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGL 463 (590)
Q Consensus 387 ~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~ 463 (590)
.+++|.++.. ..+++..+...+....+|.++||++||+.. +.....+..++.++..... ...+++...+.|.
T Consensus 25 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 99 (375)
T TIGR00899 25 SEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL-----ILFCCLLAALACLLFAWNRNYFLLLVLGVLLSS 99 (375)
T ss_pred HcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-----HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 3456776554 367788888899999999999999986532 2223333333333333322 3345555566676
Q ss_pred hhhccchhhHHHHHHhhcccchh--hhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCC
Q 007766 464 SYGAHWAIVPAAASELFGLKSFG--ALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 541 (590)
Q Consensus 464 ~yG~~~~l~P~i~ad~FG~k~~g--~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (590)
..+.......+++.|....+.-+ ..+|+...+..+|..+ ++.+.+.+.|..+
T Consensus 100 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~~------------------------- 153 (375)
T TIGR00899 100 FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVI-GPPLAFWLALGFG------------------------- 153 (375)
T ss_pred hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH-hhhHHHHHHHhcc-------------------------
Confidence 66666666666677776443322 3367777778888876 6878888887544
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 542 TCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 542 ~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
+|..|.+.+..+++..++.+..
T Consensus 154 -------~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 154 -------FTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999988877776666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.4e-05 Score=81.65 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=95.7
Q ss_pred cHHHHHH--HHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHH
Q 007766 359 KADFLLL--FFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV 434 (590)
Q Consensus 359 ~~~Fwll--~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~ 434 (590)
+|..|.- ++.+.++.| +++.-+..+.+++|.+..+ ..+++.++...++.+++|.++||.+|+....|... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~g---~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~-~~ 79 (382)
T PRK11128 4 QPTRWLALSYFGYFFAYG---VFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLA-LL 79 (382)
T ss_pred cccHHHHHHHHHHHHHHH---HHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHH-HH
Confidence 3455544 344443332 2233445566778876654 47888999999999999999999998532222221 11
Q ss_pred HHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHh
Q 007766 435 AQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 513 (590)
Q Consensus 435 ~~~l~~~~~l~~~~-~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd 513 (590)
.++..+ +.... .....+++...+.|+..++.+....+++.|+ .|+.+..+|.......+|..+ +|.++|.++|
T Consensus 80 -~~~~~~--~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~i-gp~lgg~l~~ 153 (382)
T PRK11128 80 -TLLFAV--AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVI-GSALTGKLVS 153 (382)
T ss_pred -HHHHHH--HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHH-HHHHHHHHHH
Confidence 111111 11122 2234566677778888888888877777776 566778888888888888765 7889999998
Q ss_pred hhh
Q 007766 514 YYA 516 (590)
Q Consensus 514 ~~~ 516 (590)
..+
T Consensus 154 ~~g 156 (382)
T PRK11128 154 WFG 156 (382)
T ss_pred HcC
Confidence 765
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=87.56 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=103.0
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH--Hh-cCchhHHHHHHHHHhhhhccchhhHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY--AI-GWPGEIYVTTVLVGLSYGAHWAIVPA 474 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~--~~-~~~~~l~~~~~liG~~yG~~~~l~P~ 474 (590)
..+.+.+...++.+.+|+++||++||+.+ ....++..++.++. .. .....+++.-++.|++.|..+...+.
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~ 154 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHK 154 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHH
Confidence 56777788889999999999999997744 33333333333332 11 22346788888999999999999999
Q ss_pred HHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh-hhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHH
Q 007766 475 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-AEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITC 553 (590)
Q Consensus 475 i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F 553 (590)
+++|+|..|+-|+-.|+...+..+|..+ ++.+.+.+.|.. + ++..|
T Consensus 155 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~~g--------------------------------w~~~f 201 (465)
T TIGR00894 155 IIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESWGG--------------------------------WPMIF 201 (465)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC--------------------------------CCeeh
Confidence 9999999999999999999999999987 688888888753 3 78889
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007766 554 GIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 554 ~i~~~~~~~a~vls~~l 570 (590)
++.+.++++..++.+.+
T Consensus 202 ~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 202 YVFGIVGCAWSLLWFVF 218 (465)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 99888776665555444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.8e-05 Score=81.78 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=88.9
Q ss_pred cccccccccHH-HHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 007766 31 IGYLFGSISPV-IKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSL 108 (590)
Q Consensus 31 t~Y~fSvys~~-Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~ 108 (590)
..+.|..+.|. +++.+|+++++...+.....+.. ...++.|++.||+|+|..+.++.+...+.+..+. ..+ +
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~~---~- 304 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML--MAH---S- 304 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH--HHh---h-
Confidence 34445555554 66789999998887533333333 3467999999999999888877665554433221 121 2
Q ss_pred hHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHHhhHHHH
Q 007766 109 PLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPSIVV 187 (590)
Q Consensus 109 ~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~~~~~v~ 187 (590)
.+.+.+..++.+.+.+...........+.+|++||++.|+......++..+-+.+...+ +.-.-...+.+...+.+++
T Consensus 305 -~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~ 383 (393)
T PRK15011 305 -PAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT 383 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 23222233333322222222233344567899999999998777777776666555444 2112222333444455555
Q ss_pred Hhhheee
Q 007766 188 MAFMFIV 194 (590)
Q Consensus 188 l~~~~~i 194 (590)
++...++
T Consensus 384 ~~~~~~~ 390 (393)
T PRK15011 384 LFCLLRI 390 (393)
T ss_pred HHHHHhh
Confidence 5555444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.6e-05 Score=84.86 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=84.1
Q ss_pred chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-------chhHHHHHHHHHhhhhccc
Q 007766 397 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-------PGEIYVTTVLVGLSYGAHW 469 (590)
Q Consensus 397 ~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-------~~~l~~~~~liG~~yG~~~ 469 (590)
...+...+...+|.+++|+++||+|||+.+ .+..++..++.++..... ...+++.-.+.|++.|+.+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVY------GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 467888899999999999999999997743 333333333333322221 2367888889999999999
Q ss_pred hhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 470 AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 470 ~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
...|.+++|.|..|+-|+..++......+|..+ ++.+...+.
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~-g~~~~~~~~ 175 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILA-GAIVALIVL 175 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999998865 565655443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.1e-05 Score=83.46 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=107.4
Q ss_pred cccceeecc-hHHHHHHhcCCcccc-hhHHHHhhhhhccccccchhhhh-----hhccCCchhHHHHHHHHHHHHHHHHH
Q 007766 374 GSGLTVIDN-LGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAMAVAQVVMAFALLYY 446 (590)
Q Consensus 374 g~Glm~i~n-~~~I~~s~g~~~~~~-~Vsl~si~N~~GRl~~G~lSD~l-----~r~~~~~R~~~l~~~~~l~~~~~l~~ 446 (590)
|...++++. +....++.|.+..++ .+++++..- .++++||.++||+ |||+ .++.+.+.+.+++...+
T Consensus 25 gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr-----~~ll~~~i~~~~~~~~~ 98 (491)
T PRK11010 25 GLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY-VFKFLWSPLMDRYTPPFLGRRR-----GWLLATQLLLLVAIAAM 98 (491)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHcccccCCCCch-----HHHHHHHHHHHHHHHHH
Confidence 333444443 333344555554332 333344432 6899999999999 6533 23445555555554333
Q ss_pred HhcC----chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhh
Q 007766 447 AIGW----PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL 522 (590)
Q Consensus 447 ~~~~----~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~ 522 (590)
.... ...+.+...+.|++.+..-....+++.|+|-.|+.|..-++...++.+|..+ ++.+.+.+.|...
T Consensus 99 a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll-g~~l~~~l~~~~~------ 171 (491)
T PRK11010 99 GFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV-SGGLALWLADRYL------ 171 (491)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc------
Confidence 3321 2356667788899999999999999999999999999999999999999876 5768888876321
Q ss_pred hhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 523 LWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
.+|..|.+.+.++++..+..++
T Consensus 172 -------------------------GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 172 -------------------------GWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred -------------------------CHHHHHHHHHHHHHHHHHHHHh
Confidence 2899999999888777666554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.3e-05 Score=86.11 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=111.8
Q ss_pred hcCCccc--chhHHHHhhhhhccccccchhhhh-hhccCCchhHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHh
Q 007766 390 LGYADTS--IYVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGL 463 (590)
Q Consensus 390 ~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l-~r~~~~~R~~~l~~~~~l~~~~~l~~~~~---~~~~l~~~~~liG~ 463 (590)
+|.++++ ..++.++-.--+--+++||++||+ |+|+++ ++..+++++||+++... .+..++++.+++++
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI------~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~i 129 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI------VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIV 129 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH------HHHHHHHHHHHHHHhccccccccHHHHHHHHHHh
Confidence 5566554 377777777888899999999998 555543 78888999999988765 35689999999999
Q ss_pred hhhccchhhHHHHHHhhcccchhh--hhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCC
Q 007766 464 SYGAHWAIVPAAASELFGLKSFGA--LYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 541 (590)
Q Consensus 464 ~yG~~~~l~P~i~ad~FG~k~~g~--nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (590)
++|..=+-.-++++|.+..++=-. -+++.+++..+|+++ +|.+.+++-+..
T Consensus 130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i~~~~~~~~-------------------------- 182 (498)
T COG3104 130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APIITGLLAINY-------------------------- 182 (498)
T ss_pred ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHHHHHHHHhh--------------------------
Confidence 999999999999999998765332 366778888899986 898888776533
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 542 TCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 542 ~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
||...|.+++....++++.-+...
T Consensus 183 ------g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 183 ------GWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHcc
Confidence 488888888877777766665544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=77.05 Aligned_cols=129 Identities=18% Similarity=0.222 Sum_probs=90.1
Q ss_pred hhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCc---------hhHHHHHHHHHhhhhccchhhHHHHH
Q 007766 407 FLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWP---------GEIYVTTVLVGLSYGAHWAIVPAAAS 477 (590)
Q Consensus 407 ~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~---------~~l~~~~~liG~~yG~~~~l~P~i~a 477 (590)
.+|.++.|+++||++||+.+ .+...+..++.++...... ..+.+.-.+.|++.|..+...+++++
T Consensus 49 ~i~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~ 122 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKKTL------VITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLA 122 (394)
T ss_pred hhHHHHhhhhhhhhhhHHHH------HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhh
Confidence 46788999999999997633 4555555555554443221 13677778999999999999999999
Q ss_pred HhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHH
Q 007766 478 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA 557 (590)
Q Consensus 478 d~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~ 557 (590)
|.+-.|+-+...++...+..+|..+ ++.+.+.+.+..+.... ..-.+|..|.+.+
T Consensus 123 ~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~~~~~~~~~~~------------------------~~~~w~~~~~~~~ 177 (394)
T TIGR00883 123 EYAPPGKRGFYGSFQQVGAPVGLLL-AALTVLLLSYLLGDDAL------------------------LEWGWRIPFLVSA 177 (394)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHh------------------------hccchHHHHHHHH
Confidence 9999999999999999888888876 56566555432111000 0013888998877
Q ss_pred HHHHHHHHH
Q 007766 558 GLCIIAMVM 566 (590)
Q Consensus 558 ~~~~~a~vl 566 (590)
.+++++.++
T Consensus 178 ~~~~~~~~~ 186 (394)
T TIGR00883 178 VLVLIGLYL 186 (394)
T ss_pred HHHHHHHHH
Confidence 766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=80.23 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=69.4
Q ss_pred cccccccccHH-HHHHhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 007766 31 IGYLFGSISPV-IKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSL 108 (590)
Q Consensus 31 t~Y~fSvys~~-Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~ 108 (590)
..|.+..|-|+ +++++|+++++...+ ++....+...+++.|++.||+|+|.+..+++++..+.......... ..++
T Consensus 258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~- 335 (432)
T PRK10406 258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NVSS- 335 (432)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cCCc-
Confidence 45667777777 566789999888774 4444444455778899999999998888877654333222221111 1111
Q ss_pred hHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhh
Q 007766 109 PLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGF 153 (590)
Q Consensus 109 ~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~ 153 (590)
+++.+. ...++..+.++..........+.||. +||++.|+.-+.
T Consensus 336 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 336 PYAAFG-LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 222221 12222222222212223345689985 699999998654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.86 E-value=7e-05 Score=81.66 Aligned_cols=174 Identities=13% Similarity=0.164 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHHHhCCChh--------hHHHHHHHHHHhh-hccCccceeeeccchHHHHHHH
Q 007766 16 WLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQR--------QVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIG 86 (590)
Q Consensus 16 W~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~--------~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG 86 (590)
|..++..++++......| .|.+...++.|++++ +...+.....++. ...++.|++.||+|+|.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITN---IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred eeHHHHHHHHHhHHHHHH---HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 445555555554443333 444555556676652 3344322222233 3467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhH-hhhhhhHHHHHHH
Q 007766 87 VLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILK-GFAGLSGAILTQI 164 (590)
Q Consensus 87 ~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~-a~~GLSa~i~s~i 164 (590)
.++..+++.+.... ... ....+++.+..++.|.+.+..+.+......+++|+ +||++.|+.- ...++++.+-..+
T Consensus 288 ~~~~~v~~~l~~~~-~~~--~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l 364 (418)
T TIGR00889 288 LVAWALRFGFFAYG-DPE--YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL 364 (418)
T ss_pred HHHHHHHHHHHHHc-Ccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99887776543221 111 11234444556666766666666667777899985 6999999995 6677777666655
Q ss_pred HHHh-c--C--Ch---hhHHHHHHHhhHHHHHhhheeee
Q 007766 165 YIMI-S--A--NE---TSLIFLVAVGPSIVVMAFMFIVR 195 (590)
Q Consensus 165 ~~~~-~--~--~~---~~fllfla~~~~~v~l~~~~~ir 195 (590)
...+ + + +. +.-.++.++...+.+++..++++
T Consensus 365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5444 1 1 11 12223444444555555555554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0008 Score=72.87 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=96.6
Q ss_pred HhcCCcccc--hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhh
Q 007766 389 SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYG 466 (590)
Q Consensus 389 s~g~~~~~~--~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG 466 (590)
.+|++..++ .--..++.-..|-+++|++.||++.|..+ +.....++++....+....+..+++...++|++.|
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl-----~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL-----MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 567776653 33456777889999999999999887433 33333344443334444456689999999999999
Q ss_pred ccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 467 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 467 ~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+..+.-=+..++..-.++-|+-||+-.+..=.++++ +|.+.+.+-|.++
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~-gp~lv~v~t~iTg 405 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL-GPFLVAVITQITG 405 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH-HHHHHHHHHHHhc
Confidence 999999999999999999999999999999999986 8999999999887
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=79.95 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=76.3
Q ss_pred hhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCc-h--------hHHHHHHHHHhhhhccchhhHH
Q 007766 404 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWP-G--------EIYVTTVLVGLSYGAHWAIVPA 474 (590)
Q Consensus 404 i~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~-~--------~l~~~~~liG~~yG~~~~l~P~ 474 (590)
++..+|.++.|+++||+|||+.+ .+...+..++.++...... . .+.+.-.+.|++.|+.+.....
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 148 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRML------MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL 148 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Confidence 34557778889999999997743 4455555655555444322 1 3667778999999999999999
Q ss_pred HHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 475 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 475 i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
+++|.+..|+-|...+....++.+|..+ +..+.+.+.
T Consensus 149 ~~~e~~p~~~rg~~~~~~~~g~~~G~~l-~~~~~~~l~ 185 (438)
T PRK09952 149 LAVESAPKNKKAFYSSGVQVGYGVGLLL-STGLVSLIS 185 (438)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999898888888888888765 454555444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=79.10 Aligned_cols=145 Identities=14% Similarity=0.056 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhhcccceeecc-hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 361 DFLLLFFSLVLASGSGLTVIDN-LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 361 ~Fwll~~~~~~~~g~Glm~i~n-~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
.|+++...|++ .|...-+++- ..++.++.+.++.+ ...+...+...++.+..|++.||++||+.+ .+..+
T Consensus 4 ~~~~~~~~f~~-~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~------~~g~~ 76 (410)
T TIGR00885 4 PFALITSLFAL-WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI------LLGLF 76 (410)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHH
Confidence 35555544443 3333323322 23344456776543 467788889999999999999999997743 55666
Q ss_pred HHHHHHHHHHh----cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHh
Q 007766 438 VMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 513 (590)
Q Consensus 438 l~~~~~l~~~~----~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd 513 (590)
+++++.+++.. .....+.+...+.|++.|.......+.+.+....|+.++--++......+|+.+ ++.+.+.+..
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-g~~i~~~l~~ 155 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII-GMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 66666655422 123467788889999999999999999998877777888888888888888875 6777776653
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=78.00 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHH
Q 007766 16 WLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGY 94 (590)
Q Consensus 16 W~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY 94 (590)
|..++...+.+.+....| .|.++.-+++|++..+...+-....++.. .++++|++.||+|+|..+.+|.++..+++
T Consensus 208 ~~~l~~~~l~~~~~~~~~---~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~ 284 (382)
T TIGR00902 208 LRFLAAVCLIQGAHAAYY---GFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW 284 (382)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 556666666555544444 45566556699999999885334444443 47889999999999999999999998887
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhH-hhhhhhHHHHHHHHHHh
Q 007766 95 GLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILK-GFAGLSGAILTQIYIMI 168 (590)
Q Consensus 95 ~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~-a~~GLSa~i~s~i~~~~ 168 (590)
.++.. . ++.|++....++-|.+-+....+++.-..++ |+ +|++..|+.. ...|++..+-+.+...+
T Consensus 285 ~~~~~-----~--~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 285 AIIGA-----I--EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred HHHHh-----H--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65322 2 2356666667777777777777777766666 64 6898899864 46788888887776666
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.5e-05 Score=87.90 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=97.7
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-----------
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----------- 449 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~----------- 449 (590)
+.+|-+..++++.. ..+|.+.+.+.++-+..|++.||.+|++.+ .+..+++.++.++++..
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhcCCccccc
Confidence 34455566776654 589999999999999999999999987744 34445555555443321
Q ss_pred ---------------------------------------C--chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhh
Q 007766 450 ---------------------------------------W--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL 488 (590)
Q Consensus 450 ---------------------------------------~--~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~n 488 (590)
. ...++++-++.|++-|..+.+.++++.|.+..|+-+..
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 0 12467899999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 489 YNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 489 yG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
.|++..+..+|..+ ++.++|.+.+.
T Consensus 210 ~~i~~~~~~iG~~l-G~llgg~l~~~ 234 (633)
T TIGR00805 210 IGILESIAVFGPAF-GYLLGSFCLQI 234 (633)
T ss_pred HHHHHHHHHhhhHH-HHHHHHHHHhc
Confidence 99999999999875 78888887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=76.49 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHH-HHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHH
Q 007766 16 WLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLL-GVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVG 93 (590)
Q Consensus 16 W~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~G 93 (590)
|..++...+.+...+..|.|. ++-+++ .|++.+++..+ ++...++..+ .+++|++.||+|+|..+.++.++....
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~--~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLS--KLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556666667777777777753 455655 79999999886 4333344444 568999999999999998887765444
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC--CCCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 94 YGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP--KSRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 94 Y~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP--~~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
. +.++........+..+.+....++.+.+.+....+.....++..+ ++||+..++..+..+++..+-..+...+
T Consensus 288 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l 363 (390)
T TIGR02718 288 A-LLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL 363 (390)
T ss_pred H-HHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233332222111223333333344444444444444555566664 4689999999999999988877776554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.004 Score=68.95 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=72.4
Q ss_pred HHHhCCChhhHHHH-HHHHHHhhhccCccceeeecc----c-hHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHH
Q 007766 43 KAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEIL----P-VWSINLIGVLQNFVGYGLVWLIVTNRLP-SLPLWVLCI 115 (590)
Q Consensus 43 k~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~----g-pr~~~~iG~~l~~~GY~~~~l~~~g~i~-s~~~~~l~~ 115 (590)
-+.+|++......+ .++.-+=+..=++-|.+.||. | .|.=++.|++-.++-+.++|.. .+.+ ..+....++
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~--p~~~~~~k~~ya~v 117 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFIT--PDFSMTGKLIYALV 117 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcC--CCcccCcchHHHHH
Confidence 35688998888884 666666666788999999975 3 2455677888888888787763 3221 122222233
Q ss_pred -HHHHh-hcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHH
Q 007766 116 -AIFVG-TNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILT 162 (590)
Q Consensus 116 -~~~l~-G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s 162 (590)
|.+++ +...--.-..++.+.+-+=|++|-...+.--.+-.++..+.+
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~ 166 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVA 166 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 222222223466666666689998888776666555554444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=74.96 Aligned_cols=161 Identities=15% Similarity=0.079 Sum_probs=103.0
Q ss_pred hHHHHHHhcCCcccc-hhHHHHhhhhhccccccchhhhhh-hccCCchhHHHHHHHHHHHHHHHHHHhcC--c--hhHHH
Q 007766 383 LGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIV-RKFAYPRPVAMAVAQVVMAFALLYYAIGW--P--GEIYV 456 (590)
Q Consensus 383 ~~~I~~s~g~~~~~~-~Vsl~si~N~~GRl~~G~lSD~l~-r~~~~~R~~~l~~~~~l~~~~~l~~~~~~--~--~~l~~ 456 (590)
+..+.++.|.+..++ ..+...+...+ ++++|.++||.. |+.+.-|++ +.....+.++..+.+.+.. . ..++.
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~-l~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 88 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSW-LVLTQVLLLSLLLILSFLVPSTDLPLLAG 88 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHH-HHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 344566778777643 22333333433 899999999983 111211233 3344444444433333221 1 23455
Q ss_pred HHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccC
Q 007766 457 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR 536 (590)
Q Consensus 457 ~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~ 536 (590)
...+.+++.+......-+++.|.+..|+-+..-|+...+..+|..+ ++.+++.+++..+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~g~~~----------------- 150 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL-SGSLALVLASPEFANT----------------- 150 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc-----------------
Confidence 5556677777777778889999999999999999999999999876 6778888876544110
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 537 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 537 ~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
.....+|..|.+.+.+.+++++..++.
T Consensus 151 -------~~~~~wr~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 151 -------GLITLWGYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred -------ccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 123469999999988777766655543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00022 Score=63.00 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=74.2
Q ss_pred ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCC
Q 007766 66 IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRG 144 (590)
Q Consensus 66 ~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG 144 (590)
.+++.|++.||+|+|..+.++.++..++....... .++|.+.+..++.|.+.+..++.......+.+|+ +|+
T Consensus 14 ~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
T TIGR00880 14 YSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86 (141)
T ss_pred HHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence 46788999999999999999999888887654331 2355555666777777777777777778899985 699
Q ss_pred chhhhhHhhhhhhHHHHHHHHHHh
Q 007766 145 PVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 145 ~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
.+.|+......++..+-..+...+
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~ 110 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVL 110 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHH
Confidence 999999999888887777666555
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00031 Score=76.65 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=74.4
Q ss_pred CcccccccccHHH-HHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHH-HHHHHHHHHHhcCCC
Q 007766 30 GIGYLFGSISPVI-KAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNF-VGYGLVWLIVTNRLP 106 (590)
Q Consensus 30 Gt~Y~fSvys~~L-k~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~-~GY~~~~l~~~g~i~ 106 (590)
...|....|.|.. ++.+|+++.+..++.....++.. ..+++|++.||+|+|.+..++.++.. .++...... .. .+
T Consensus 252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~-~~ 329 (434)
T PRK15075 252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-VA-AP 329 (434)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-Hc-CC
Confidence 3345566777774 55689999887776655555553 36788999999999998888765533 233221111 11 11
Q ss_pred CchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhh-hhHHHHHHHHH
Q 007766 107 SLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAG-LSGAILTQIYI 166 (590)
Q Consensus 107 s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~G-LSa~i~s~i~~ 166 (590)
+++.+....++.+.+.+...........+.+|+ .||++.|+..+... +++.+...+..
T Consensus 330 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g 389 (434)
T PRK15075 330 --SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST 389 (434)
T ss_pred --chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence 222222222222222333333334456678885 59999998655333 33444444443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=80.27 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=99.6
Q ss_pred chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHH
Q 007766 397 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAA 475 (590)
Q Consensus 397 ~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i 475 (590)
...+++-+...+|-+++|.+||++|||..+ .++.++.+++.+..+... ...+.+.=.+.|++.++.+.+...+
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~------~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~ 195 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVL------LVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL 195 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh
Confidence 356788888899999999999999997643 555555555555544443 4578999999999999999999999
Q ss_pred HHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHH
Q 007766 476 ASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 555 (590)
Q Consensus 476 ~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i 555 (590)
++|+++.|+=+..-.+ ...+-.++.+ .+.+++++.. . +|..+.+
T Consensus 196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~--~--------------------------------Wr~~~~~ 239 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITR--D--------------------------------WRWLFWI 239 (521)
T ss_pred heeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHh--h--------------------------------HHHHHHH
Confidence 9999999998887777 5555555555 4667777765 1 8888999
Q ss_pred HHHHHHHHHHH
Q 007766 556 MAGLCIIAMVM 566 (590)
Q Consensus 556 ~~~~~~~a~vl 566 (590)
....+++.+++
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 88888877776
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00041 Score=74.75 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=102.0
Q ss_pred ceeecchHH-HHHHhcCCcccc-hhHHHHhhhhhccccccchhhhh-----hhccCCchhHHHHHHHHHHHHHHHHHHhc
Q 007766 377 LTVIDNLGQ-ICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAMAVAQVVMAFALLYYAIG 449 (590)
Q Consensus 377 lm~i~n~~~-I~~s~g~~~~~~-~Vsl~si~N~~GRl~~G~lSD~l-----~r~~~~~R~~~l~~~~~l~~~~~l~~~~~ 449 (590)
.+++...-| +.++.|.+.+++ .++++... ....+++|.++||+ |||+. | +.++.+++++++..+...
T Consensus 15 ~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~----~-l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 15 LALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRG----W-LLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchh----H-HHHHHHHHHHHHHHHHhc
Confidence 334443333 446778887764 23333333 57889999999999 66442 2 344455555444443332
Q ss_pred C----chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhh
Q 007766 450 W----PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWK 525 (590)
Q Consensus 450 ~----~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~ 525 (590)
. ...+++..++.+++.........+++.|.+-.|+-++.-++...++.+|..+ ++.+.+.+.+...
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~-g~~l~~~l~~~~~--------- 158 (402)
T PRK11902 89 PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV-SGGLALWLADRVL--------- 158 (402)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH-HhHHHHHHHhccc---------
Confidence 1 1234555556677777777888999999998888999999999999999876 5668888876431
Q ss_pred ccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 007766 526 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS 567 (590)
Q Consensus 526 ~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls 567 (590)
-+|..|.+.+.++++..+..
T Consensus 159 ----------------------gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 159 ----------------------GWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHH
Confidence 17889999888776655543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00098 Score=73.87 Aligned_cols=156 Identities=12% Similarity=0.140 Sum_probs=121.2
Q ss_pred HHHHHhcCCccc---chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHH
Q 007766 385 QICQSLGYADTS---IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVL 460 (590)
Q Consensus 385 ~I~~s~g~~~~~---~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~l 460 (590)
+|.+++|+++.+ ...+.+...-.+.-+..|+++||++-|+.+ .+..+.-.+..+++.+. ....+.+.=++
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL------~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~l 124 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL------VLQALSFVCVWLLLLLGTSVWHMQLMEVF 124 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577888765 478899999999999999999999865532 33333333333333332 34568888899
Q ss_pred HHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCC
Q 007766 461 VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQET 540 (590)
Q Consensus 461 iG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (590)
.|++-|+.+ .+-..++.+|-.|++++-.++...+..+|..+ ++.+.+.+. ..
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~qll~-s~------------------------- 176 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQLLV-TL------------------------- 176 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hc-------------------------
Confidence 999999999 99999999999999999999999999999987 566776632 11
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007766 541 PTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY 578 (590)
Q Consensus 541 ~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r~r~~~ 578 (590)
|.+-|+.-.+|+.+..+++++++++|-+.+|+.|
T Consensus 177 ----gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 177 ----GWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 1224999999999999999999999998888766
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00022 Score=76.11 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=83.2
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS 477 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~a 477 (590)
.=|.+++..++.-..||-+||+.|||-.+ .++....++..++.+.+..-..++.+=..|=++=+..++.-++++
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvl------l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiis 146 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGRKPVL------LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIIS 146 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHH
Confidence 55789999999999999999999996532 344444444555554443333344433445556668899999999
Q ss_pred HhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHh
Q 007766 478 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 513 (590)
Q Consensus 478 d~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd 513 (590)
|.+-.|+-+.-.+.+.+++++|-++ +|++.|++-.
T Consensus 147 dV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~ 181 (451)
T KOG2615|consen 147 DVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ 181 (451)
T ss_pred hhcChhhccceeeeeehhhhcchhh-cchhhhHHHh
Confidence 9999999999999999999999775 8999998876
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00079 Score=73.97 Aligned_cols=143 Identities=16% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHH
Q 007766 361 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV 438 (590)
Q Consensus 361 ~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l 438 (590)
.|++++++|+.-...-.+...-+.++.++++.++.+ ..++.+.+...++-+..|.++||+|||+.+ .+..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l------~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence 567777666554433333333344455567877654 477889999999999999999999997743 455566
Q ss_pred HHHHHHHH---Hhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhh-hhhHHHhhhhhHHHHhhHhHHHHH
Q 007766 439 MAFALLYY---AIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGA-LYNFLTLASPAGSLIFSGVIASGI 511 (590)
Q Consensus 439 ~~~~~l~~---~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~-nyG~~~~a~~~g~~i~~~~l~g~i 511 (590)
.+++.++. ... ....+.++-.+.|++.|.......+++.|. ..++-+. .-++....+.+|..+ ++.+.+.+
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~-~~~~~~~~~~s~~~~~~~~G~~~-g~~~g~~l 176 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL-GPESSGHFRLNLAQTFNSFGAII-AVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CChhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 66665443 222 234677888999999999999999999986 4555553 566667777777765 56554443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00068 Score=73.40 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=113.3
Q ss_pred HHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHH
Q 007766 385 QICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLV 461 (590)
Q Consensus 385 ~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~li 461 (590)
.|.++.|++.++ ..-|.++|.=.++..++|.+|||...|+ ++...+++.++..+++-+.. ...+.+.-.+=
T Consensus 54 ~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~------fm~~gLilsai~nil~Gfs~s~~~~~~l~~ln 127 (448)
T COG2271 54 ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY------FMAFGLILSAIVNILFGFSPSLFLFAVLWVLN 127 (448)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce------eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345555676665 4788999999999999999999997655 23455555555544444332 33566777778
Q ss_pred HhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHH--HHHHhhhhhhhhhhhhhccCCCCCCccCCCC
Q 007766 462 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA--SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQE 539 (590)
Q Consensus 462 G~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~--g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (590)
|+-.|..|+-.-.++..+|..|.=|+-|++..++--+|+.+. |.+. |.+-++..
T Consensus 128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~-~~~~~la~~~~~~~----------------------- 183 (448)
T COG2271 128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA-PLVALLAFFAFHGG----------------------- 183 (448)
T ss_pred HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH-HHHHHHHHHHhccc-----------------------
Confidence 999999999999999999999999999999999999999985 6677 77666543
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 540 TPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 540 ~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
.|.+|++-++++++-.+..+++.
T Consensus 184 ---------w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 184 ---------WRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999987766555555444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00097 Score=75.25 Aligned_cols=147 Identities=17% Similarity=0.261 Sum_probs=103.9
Q ss_pred HHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHHhc-------CCcccchhHHHHhhhhhcc----ccccchhhhhhh
Q 007766 354 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLG-------YADTSIYVSMISIWNFLGR----VGGGYFSEAIVR 422 (590)
Q Consensus 354 ~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g-------~~~~~~~Vsl~si~N~~GR----l~~G~lSD~l~r 422 (590)
+.-+|+++|..+|+.-.+ +|+|.-.+..+ .+.....|++...+..+-. +.+|.+.||+.|
T Consensus 4 ~aplr~~~Fr~lw~a~~i---------S~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr 74 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLI---------SNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDR 74 (524)
T ss_pred cccccCchHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456899999999997665 44444444322 2333456777666655444 678999999988
Q ss_pred ccCCchhHHHHHHHHHHHHHHHH---HH-hc--CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhh
Q 007766 423 KFAYPRPVAMAVAQVVMAFALLY---YA-IG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS 496 (590)
Q Consensus 423 ~~~~~R~~~l~~~~~l~~~~~l~---~~-~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~ 496 (590)
|+- +..+.+++++..+. +. .+ .+..+++.++++|++-.......-+++.|....++....-++..+..
T Consensus 75 rri------li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ 148 (524)
T PF05977_consen 75 RRI------LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISF 148 (524)
T ss_pred hHH------HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 763 34444444333221 11 22 24578888999999999888999999999999999988888888888
Q ss_pred hhHHHHhhHhHHHHHHhhhh
Q 007766 497 PAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 497 ~~g~~i~~~~l~g~iyd~~~ 516 (590)
-++-.+ +|.++|.++...+
T Consensus 149 niar~i-GPalgG~Lva~~G 167 (524)
T PF05977_consen 149 NIARII-GPALGGILVAFFG 167 (524)
T ss_pred HHHHhc-cchHHHHHHHHHH
Confidence 887765 7989999987666
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00049 Score=73.94 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=117.8
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAA 476 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ 476 (590)
.-+..++.+.+--.+.|.+.||+|+|. | +++...+|..+..++++.. ...++++=.+=|++.-..+..-=+++
T Consensus 111 LFaskA~~qllvnp~~G~l~~~iGy~i--p----m~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml 184 (464)
T KOG3764|consen 111 LFASKALVQLLVNPFFGNLIDRIGYKI--P----MVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML 184 (464)
T ss_pred HHHHHHHHHHHhcccchhhHHHhcccc--H----HHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence 556678888888899999999999744 2 4566777777777777665 45788888999999999999999999
Q ss_pred HHhhcccch-hhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHH
Q 007766 477 SELFGLKSF-GALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 555 (590)
Q Consensus 477 ad~FG~k~~-g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i 555 (590)
+|.|..+|= |+-.|+.....++|-.+ +|...|.+||.-+ |+..|.|
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lv-gPpfGGilYe~~G--------------------------------k~aPFlV 231 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLV-GPPFGGILYEFAG--------------------------------KSAPFLV 231 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhcccee-cCCcccchHhhcC--------------------------------CcCcHHH
Confidence 999977775 99999999999999876 7999999999877 7888999
Q ss_pred HHHHHHHHHHHHHHhhhhhhH
Q 007766 556 MAGLCIIAMVMSLIVVHRTKS 576 (590)
Q Consensus 556 ~~~~~~~a~vls~~l~~r~r~ 576 (590)
.+.+|++..++-+.+...+|.
T Consensus 232 L~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 232 LAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHHHHHHHHHheeCcccc
Confidence 999999999999988877664
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=71.54 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=106.4
Q ss_pred ecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhh----hhhccCCchhHHHHHHHHHHHHHHHHHHhcCc--
Q 007766 380 IDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEA----IVRKFAYPRPVAMAVAQVVMAFALLYYAIGWP-- 451 (590)
Q Consensus 380 i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~----l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~-- 451 (590)
..++.++.+.+|.+... ....+-.+...+.-.+.|++||| +|||+ ++.+ ......+++++++.....
T Consensus 24 ~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr----p~il-~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 24 LSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR----PFIA-AGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH----HHHH-HHHHHHHHHHHHHHhCchhh
Confidence 45677788888886543 35667778888889999999996 66644 3332 223333334333322110
Q ss_pred ----------------hhHHHHHHHHHhhhhccchhhHHHHHHhhcccch--hhhhhHHHhhhhhHHHHhhHhHHHHH--
Q 007766 452 ----------------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF--GALYNFLTLASPAGSLIFSGVIASGI-- 511 (590)
Q Consensus 452 ----------------~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~--g~nyG~~~~a~~~g~~i~~~~l~g~i-- 511 (590)
..+.++..+..++......-+.++++|.+..++- +.-+++......+|+.+ ++.+.|..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il-g~~~g~~~~~ 177 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL-GYAAGAYSGL 177 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhH
Confidence 1223334455568888888889999999988754 56788888888999876 56555543
Q ss_pred HhhhhhhhhhhhhhccCCCCCCccCCCCCCcc-cCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 512 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTC-LGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 512 yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
++...-. . ...| .-..-++..|++.+.+.+++++++++..+
T Consensus 178 ~~~~~~~-------------------~-~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~ 219 (477)
T TIGR01301 178 YKIFPFT-------------------K-TEACGVSCANLKSCFLIDIILLAILTYIALSAVK 219 (477)
T ss_pred HHhcccc-------------------c-ccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 2211100 0 1122 23345899999999988888888876553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.088 Score=58.02 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=76.6
Q ss_pred cccHHHHHHhCCChhhHHHHHHHHHHhhhccCccceeeeccc-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 37 SISPVIKAHMGYNQRQVSLLGVAKDLGDSIGFVPGTFVEILP-----VWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 37 vys~~Lk~~l~~sq~~~~~is~a~~~G~~~gi~~G~~~D~~g-----pr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
.-.+-+|+++|++.+|++.+....++--.+-++.|++.|.+| .|.=+++|+++..+++..+ ....+..+ +..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~-~~~~~~~~--s~~ 87 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVL-ALLPASES--SAA 87 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHH-Hhcccccc--hhh
Confidence 335669999999999999998888888888999999999997 5666778888876665442 23333222 233
Q ss_pred HHHHHHHHhhcCccccchh---hHHHHHHhCCCCCCchhhhh
Q 007766 112 VLCIAIFVGTNGETYFNTA---ALVSCVQNFPKSRGPVVGIL 150 (590)
Q Consensus 112 ~l~~~~~l~G~g~~~~~ta---al~t~~knFP~~RG~a~Gi~ 150 (590)
...++.++...|....|.+ -++-.+|.-|.+||......
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~ 129 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFV 129 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHH
Confidence 3444556666666665543 45667777888766654433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0015 Score=73.02 Aligned_cols=142 Identities=14% Similarity=0.198 Sum_probs=105.6
Q ss_pred chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHH
Q 007766 397 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAA 476 (590)
Q Consensus 397 ~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ 476 (590)
...+++.+...+|.+.+|.+.||+.-.+ +......+-.+++.+-........+...=.+.|+.-++.|..+-.++
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~-----~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l 159 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSK-----GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL 159 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence 4788999999999999999999996211 11122222222222222233344577777889999999999999999
Q ss_pred HHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHH
Q 007766 477 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM 556 (590)
Q Consensus 477 ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~ 556 (590)
+.+|+.++.|.-.|+.+.+..+|+.+ ++.++..++..++.. +...||+.|+|.
T Consensus 160 g~wy~~~e~g~r~~~~~a~~~~g~i~-ggliA~g~~~~~~~~--------------------------~~~gW~~~FiI~ 212 (495)
T KOG2533|consen 160 GNWYGKSERGLRMGIWYASASLGNIF-GGLIAYGVFKLNGSG--------------------------GLAGWRWLFIIE 212 (495)
T ss_pred HhhcChhhhhhhHHHHHHhcchhhHH-HHHHHHHhhhhcCCC--------------------------CcCCceeehhHH
Confidence 99999999999999999999999975 677888877644421 223699999999
Q ss_pred HHHHHHHHHHHHHh
Q 007766 557 AGLCIIAMVMSLIV 570 (590)
Q Consensus 557 ~~~~~~a~vls~~l 570 (590)
++++++..+++++.
T Consensus 213 G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 213 GVITLVLGIVVFFF 226 (495)
T ss_pred HHHHHHHHheEEEE
Confidence 99888777666543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0046 Score=66.79 Aligned_cols=156 Identities=14% Similarity=0.169 Sum_probs=91.5
Q ss_pred HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC--c-----hhHHHHHH
Q 007766 389 SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW--P-----GEIYVTTV 459 (590)
Q Consensus 389 s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~--~-----~~l~~~~~ 459 (590)
.+|.+... ...++..++..+..++.|++|||.++|++-.|++.+.... +..++.+++.... . ..+.+...
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAI-PFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHH-HHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 34555443 4778888999999999999999987766555666654333 3333333332211 1 12334445
Q ss_pred HHHhhhhccchhhHHHHHHhhc-ccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCC
Q 007766 460 LVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQ 538 (590)
Q Consensus 460 liG~~yG~~~~l~P~i~ad~FG-~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (590)
+.+.+++....-+-++..|... .|.-++..++...+..+|+.+ .+.+.+.+....+...
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~~------------------- 167 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGGD------------------- 167 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc-------------------
Confidence 5666666544444566666653 455666666666666666655 3434455543222100
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 539 ETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 539 ~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
....|+..|.+.++++++..+++.+..
T Consensus 168 ------~~~g~~~~~~i~~~l~~~~~~~~~~~~ 194 (437)
T TIGR00792 168 ------DKFGWFMFALVLALIGVVSLIICFFGT 194 (437)
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 011489999999888877766665433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0071 Score=67.79 Aligned_cols=133 Identities=19% Similarity=0.210 Sum_probs=96.2
Q ss_pred cchhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHH
Q 007766 396 SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPA 474 (590)
Q Consensus 396 ~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~ 474 (590)
...++...+.+.+|.+.+|.++|++|||+++ .++.++..++-++.+.. ....+.++-++.|++.|+...+.|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l------~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTL------LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence 3689999999999999999999999998754 56666666665555544 3568999999999999999999999
Q ss_pred HHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHH
Q 007766 475 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCG 554 (590)
Q Consensus 475 i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~ 554 (590)
.++|.=-.+.=|..=....+...+|-.+ + .+.|+..+.. . .-||..+.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~-~-~~~~~~~~~~-~-----------------------------~~Wr~~~~ 213 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGILL-G-YCINYGTSKV-Y-----------------------------AGWRIPLG 213 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHHH-H-HHHhhhhccC-C-----------------------------ccHHHHHH
Confidence 9999986656565555556666655443 3 3444333322 0 12787777
Q ss_pred HHHHHHHHHHHH
Q 007766 555 IMAGLCIIAMVM 566 (590)
Q Consensus 555 i~~~~~~~a~vl 566 (590)
+....+++-.+.
T Consensus 214 ~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 214 LALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHHH
Confidence 777776665555
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0099 Score=68.89 Aligned_cols=150 Identities=22% Similarity=0.367 Sum_probs=107.2
Q ss_pred hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-c--------hhHHHHH
Q 007766 390 LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-P--------GEIYVTT 458 (590)
Q Consensus 390 ~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~--------~~l~~~~ 458 (590)
+|.++.. ..+..+.-...+--++.|++.|+.-.++ ..+.+..++..+++.+++... + ..++++.
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL 92 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL 92 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence 4554432 3556666667777888999999874322 234566667777776665431 1 2477889
Q ss_pred HHHHhhhhccchhhHHHHHHhhccc---chhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCcc
Q 007766 459 VLVGLSYGAHWAIVPAAASELFGLK---SFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF 535 (590)
Q Consensus 459 ~liG~~yG~~~~l~P~i~ad~FG~k---~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~ 535 (590)
+++..+-|+.=+.+.++.+|.|..+ .+-.-|.+.+.+..+|+++ ++.+.+++.+.
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~--------------------- 150 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLI-STIITPILRGD--------------------- 150 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh---------------------
Confidence 9999999999999999999999754 3667788888999999986 66677666432
Q ss_pred CCCCCCcccC-CcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 536 RDQETPTCLG-SICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 536 ~~~~~~~C~G-~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
..|.| ..||..+|.+.+++.++++++-+.-.
T Consensus 151 -----~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 151 -----VGCFGCQDCYPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred -----hcccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 22444 45899999999999888877765433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0068 Score=63.58 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=82.9
Q ss_pred HHHHH--HhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 007766 40 PVIKA--HMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIA 116 (590)
Q Consensus 40 ~~Lk~--~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~ 116 (590)
.-+++ .+|++.++.+......-.+.. -.+.++++.||+|+|..+.++.++..++..+.+. .. . .+.+. .
T Consensus 165 ~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~--~~---~--~~~~~-~ 236 (310)
T TIGR01272 165 NFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL--TH---G--YVAMW-F 236 (310)
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH--cC---C--HHHHH-H
Confidence 33554 379998888885333333333 3578899999999999999998888777655433 11 1 12121 2
Q ss_pred HHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 117 IFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 117 ~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
.++.|.+.+..+........+.+|++.|.++++. ..-.+++++..++...+
T Consensus 237 ~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~l 287 (310)
T TIGR01272 237 VLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSL 287 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHH
Confidence 3355778888888889999999999999999986 45557777777665554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.69 E-value=1.3 Score=48.31 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=91.7
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHH--hcCchhHHHHHHHHHhhhhccchhhHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVPAA 475 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~--~~~~~~l~~~~~liG~~yG~~~~l~P~i 475 (590)
.=++.+..-.+|=+..|++..+= ....|...+-......++..++++ ...+..|..+..++|++.|..-.-.=+.
T Consensus 249 Lta~~~~G~L~G~~~~g~~l~~~---~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~ 325 (403)
T PF03209_consen 249 LTAFWGGGTLLGMLLAGFLLSRR---LGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSL 325 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556666666666667665521 111222222222222222222222 2235689999999999999877666677
Q ss_pred HHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHH
Q 007766 476 ASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 555 (590)
Q Consensus 476 ~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i 555 (590)
.-|+=...+-|.--|.+..+.+++--+ +..+.|.+.|-...-.. +. + ..-|...|.+
T Consensus 326 mM~lt~~~~aG~~mG~WGaaQA~A~Gl-g~~~GG~~~D~~~~~~~------------~~--~--------~~aY~~VF~l 382 (403)
T PF03209_consen 326 MMDLTSAGRAGLFMGAWGAAQAIARGL-GTFLGGALRDLVRALFG------------NS--P--------ALAYGVVFAL 382 (403)
T ss_pred HHhCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc------------CC--c--------chHHHHHHHH
Confidence 778888888998888888888888765 67789999996432110 00 0 0139999998
Q ss_pred HHHHHHHHHHHHHHhh
Q 007766 556 MAGLCIIAMVMSLIVV 571 (590)
Q Consensus 556 ~~~~~~~a~vls~~l~ 571 (590)
=+.+.++++++..-+.
T Consensus 383 Ea~ll~~a~~ll~~l~ 398 (403)
T PF03209_consen 383 EAVLLLAALVLLGRLD 398 (403)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8887766666554333
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0064 Score=66.47 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=81.7
Q ss_pred hhcHHHHHH---HHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhH
Q 007766 357 LMKADFLLL---FFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV 430 (590)
Q Consensus 357 l~~~~Fwll---~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~ 430 (590)
.|+++||.+ ++.+++..|.=+-+. .--.+ ..|++.++ +..|+.+++..+.-.+.|.++||++.|++. .+
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~---~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L--l~ 78 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFF---PIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL--LW 78 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH--HH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHH---HHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH--HH
Confidence 466788843 334444444222111 11222 36777655 477888888888888899999999987754 12
Q ss_pred HHHHHHHHHHHHHHHH-HhcC--chhHHHH----HHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHh
Q 007766 431 AMAVAQVVMAFALLYY-AIGW--PGEIYVT----TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 503 (590)
Q Consensus 431 ~l~~~~~l~~~~~l~~-~~~~--~~~l~~~----~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~ 503 (590)
.+..++...+-++. .... ...++++ .+.+|++|.+..++.=+.+.+. .|.++-.||=.=+...+|-.+
T Consensus 79 --~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai- 153 (412)
T PF01306_consen 79 --FIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAI- 153 (412)
T ss_dssp --HHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHH-
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHH-
Confidence 22222222222221 1110 1223333 3445666777777776666555 667777777776666666554
Q ss_pred hHhHHHHHHhhhh
Q 007766 504 SGVIASGIYDYYA 516 (590)
Q Consensus 504 ~~~l~g~iyd~~~ 516 (590)
+..++|.+++.+.
T Consensus 154 ~s~~~G~L~~i~p 166 (412)
T PF01306_consen 154 ASLLAGILFNINP 166 (412)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhheeeeeCc
Confidence 4557888887533
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.011 Score=64.09 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=83.4
Q ss_pred ccccccHH-HHHHhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 007766 34 LFGSISPV-IKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLW 111 (590)
Q Consensus 34 ~fSvys~~-Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~ 111 (590)
.||.|=|. ++++|+++..+...+ ..+..+|...=+.+|.+.||+|++.++++--+.+.++-....+..++.-...+.+
T Consensus 236 gfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 315 (417)
T COG2223 236 GFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV 315 (417)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence 45555555 788999999988776 5555666667789999999999887777666655555444333322221011222
Q ss_pred -HH--HHH-HHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 112 -VL--CIA-IFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 112 -~l--~~~-~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
.. ++. .+..|.|.+ ++-+-.-.-||++-|.+.|+.-+.=|+++..........
T Consensus 316 ~~~~~~l~l~~~~G~GnG----svfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~ 372 (417)
T COG2223 316 VFVAVFLALFVFAGLGNG----SVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVS 372 (417)
T ss_pred HHHHHHHHHHHHhccCcc----hheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHH
Confidence 11 111 222333333 333445566889999999999999999998776665443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.00013 Score=79.48 Aligned_cols=99 Identities=21% Similarity=0.272 Sum_probs=81.0
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc----CchhHHHHHHHHHhhhhccchhhH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----WPGEIYVTTVLVGLSYGAHWAIVP 473 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~----~~~~l~~~~~liG~~yG~~~~l~P 473 (590)
..+...+...+|-+++|+++||+|||+.+ .+...++.++.++.... ....+.++-.+.|++.|+.+.+.|
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHhhhcccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56777888889999999999999998865 45555556665554443 345788888999999999999999
Q ss_pred HHHHHhhcccchhhhhhHHHhhhhhHHHH
Q 007766 474 AAASELFGLKSFGALYNFLTLASPAGSLI 502 (590)
Q Consensus 474 ~i~ad~FG~k~~g~nyG~~~~a~~~g~~i 502 (590)
.++.|.=..|+=|..-.+..+++.+|..+
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~ 153 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILL 153 (451)
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999998888888888888765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.056 Score=59.04 Aligned_cols=172 Identities=16% Similarity=0.209 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHH
Q 007766 17 LVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYG 95 (590)
Q Consensus 17 ~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~ 95 (590)
.-++.+.+++...+..|.|. +.-|++.-+++.+....+-..+.+.. .+..+.+++..|+|++.++++|.+...+=|.
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~--~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~ 288 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFF--SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34566677788888888875 33466555566554444221222222 3467889999999999999999986544443
Q ss_pred HHHHHHhcCCCCchHHHHHHH----HHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHh-hhhhhHHHHHHHHHHh-
Q 007766 96 LVWLIVTNRLPSLPLWVLCIA----IFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKG-FAGLSGAILTQIYIMI- 168 (590)
Q Consensus 96 ~~~l~~~g~i~s~~~~~l~~~----~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a-~~GLSa~i~s~i~~~~- 168 (590)
+ +.-..++ .|..... ..+=|..-+..+.+++.-..++.|+ .|+++-|+..+ .+|+|+.+-+.+...+
T Consensus 289 l----~a~~~~~--~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 289 L----YAYFSDP--WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred H----HHHhcCC--cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3 3222112 2221111 2334555566788899999999986 58999998776 5799999988876655
Q ss_pred c--C-C----hhhHHHHHHHhhHHHHHhhheeeee
Q 007766 169 S--A-N----ETSLIFLVAVGPSIVVMAFMFIVRP 196 (590)
Q Consensus 169 ~--~-~----~~~fllfla~~~~~v~l~~~~~ir~ 196 (590)
+ + + -..+..+.+....++.++...+.|+
T Consensus 363 ~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 363 DAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2 1 1 1233444444444444555555544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.021 Score=62.75 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=65.0
Q ss_pred hhH-HHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh----cCc-h---hHHHHHHHHHhhhhcc
Q 007766 398 YVS-MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI----GWP-G---EIYVTTVLVGLSYGAH 468 (590)
Q Consensus 398 ~Vs-l~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~----~~~-~---~l~~~~~liG~~yG~~ 468 (590)
.|. .-.+.|.+|.+++||+.||+|||+.+ ....++|+++-..... ..+ . .+..-=.++|+.-|+-
T Consensus 88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY------G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVY------GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhh------hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence 344 44567999999999999999999976 3444444444332221 123 1 3334446789999999
Q ss_pred chhhHHHHHHhhcccchhhhhhHHHhhhhhH
Q 007766 469 WAIVPAAASELFGLKSFGALYNFLTLASPAG 499 (590)
Q Consensus 469 ~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g 499 (590)
+.+-.++++|.=-.|.=|+--+.++...+.|
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 9999999999977777776655555444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=3.8 Score=45.87 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHhCCChhhHHHH-HHHHHHhhhccCccceeeecc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 007766 44 AHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEIL-PVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGT 121 (590)
Q Consensus 44 ~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~-gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G 121 (590)
+-+|+|+++...+ +.....-=..-+++|++.||+ |.|.++..|+++..+|+.++.. ++.. ++. .+++...+.+
T Consensus 54 ~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~--~~~~-~~~--gl~i~L~~I~ 128 (498)
T COG3104 54 DGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI--SSVS-GPG--GLYIGLALII 128 (498)
T ss_pred ccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--cccc-ccc--HHHHHHHHHH
Confidence 3366999887774 554444434578999999998 9999999999999999987443 3311 222 2334444444
Q ss_pred cCccccchhhHHHHHHhCC-CC-CCchhhhhHhhhh--hhHHHHHHHHHH-hcCC-hhhHHHHHHHhhHHHHHhhheeee
Q 007766 122 NGETYFNTAALVSCVQNFP-KS-RGPVVGILKGFAG--LSGAILTQIYIM-ISAN-ETSLIFLVAVGPSIVVMAFMFIVR 195 (590)
Q Consensus 122 ~g~~~~~taal~t~~knFP-~~-RG~a~Gi~~a~~G--LSa~i~s~i~~~-~~~~-~~~fllfla~~~~~v~l~~~~~ir 195 (590)
.|.|..=+.+-.---+=|| |+ | +-.|...=++| +++ +++++... +..+ ....-+-++-+-...+++-....|
T Consensus 129 iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGs-l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 129 VGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGS-LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred hccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6666665544555566786 32 4 44444333333 343 44444333 3222 222223344445555555555555
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.026 Score=63.57 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
.-|+...+.+.+....|+. ...+.+.++.+..+ ...|+..-.-.+.-.+.+.+.||+|.|. . .++..+
T Consensus 50 a~fl~~~~~~g~~~~~Gv~----~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~-----v-~i~G~~ 119 (509)
T KOG2504|consen 50 ASFLVNLSTDGLINSFGLL----FEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRT-----V-MIAGGL 119 (509)
T ss_pred hHHHHHHhhhcchheehhh----HHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchH-----H-HHHHHH
Confidence 3455555555555555511 12233445544442 3455555444454566777888887644 3 356667
Q ss_pred HHHHHHHHHHhcCc--hhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhh
Q 007766 438 VMAFALLYYAIGWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 515 (590)
Q Consensus 438 l~~~~~l~~~~~~~--~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~ 515 (590)
+..+++++..+... .....-.++.|+++|..+.-...++..+| .|+=+.-=|+...+.++|.++| |.+--++.|..
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~~ 197 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF-PPLLKYLLSKY 197 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH-HHHHHHHHHHh
Confidence 77777766665543 34555667789999999999999999888 7888888899999999999998 55888888877
Q ss_pred hhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 516 AEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
+ +|.++.+.+.+++-.++....+
T Consensus 198 G--------------------------------~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 198 G--------------------------------WRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred C--------------------------------cHHHHHHHHHHHHHHHHHHHHc
Confidence 6 7888999988886655555543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.098 Score=56.09 Aligned_cols=117 Identities=19% Similarity=0.295 Sum_probs=84.9
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhh
Q 007766 418 EAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASP 497 (590)
Q Consensus 418 D~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~ 497 (590)
-++.||.+..|.. .....+.+++.++=.......++.++.++|.+-+-.-.+.|+++.+.| +|+-+..-|+-+++-.
T Consensus 68 ~~Lar~~g~er~l--~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~ 144 (395)
T COG2807 68 PRLARRFGEERSL--FLALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLG 144 (395)
T ss_pred HHHHHHHhhHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHH
Confidence 3555555554444 455556666666554444567999999999999999999999999999 7888888888877777
Q ss_pred hHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 498 AGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 498 ~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
+|+.+ ++.++-.+-++.. .++.+...++..++++++.=+-
T Consensus 145 ~~aaL-aa~lavpla~~~~-------------------------------gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 145 AGAAL-AAALAVPLAQHSG-------------------------------GWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HHHHH-HhhhhhHHHHhhc-------------------------------cHHHHHHHHHHHHHHHHHHHhh
Confidence 77765 4444444443331 2899999999999887665443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.015 Score=64.59 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=107.3
Q ss_pred HhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 007766 27 SCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNR- 104 (590)
Q Consensus 27 l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~- 104 (590)
...+..+.+-.|.+. .+|++..++.++.....++.. ...+.+++.+|++.|.++.++.++..+++.......+..
T Consensus 267 ~~~~~~~~~f~~~~~---~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~ 343 (468)
T TIGR00788 267 NLPGASGSVFCATTQ---CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN 343 (468)
T ss_pred hcCCCCceeEEEEcc---cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc
Confidence 344444444335443 599999999996444455554 366888888999999999999999888875533221111
Q ss_pred ----CCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHH----HHHh---cCCh
Q 007766 105 ----LPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQI----YIMI---SANE 172 (590)
Q Consensus 105 ----i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i----~~~~---~~~~ 172 (590)
++. .+.+....++.+.+.+..+++.+...++.=|+ ++|+.-|+..+...++..+-+.+ .+.+ .+|-
T Consensus 344 ~~~gi~~--~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~ 421 (468)
T TIGR00788 344 LAFGISD--EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNS 421 (468)
T ss_pred cccCCCC--eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 121 22233345666767777778888888888875 58999999999999998877763 3333 2233
Q ss_pred hhHHHHHHHhhHHHHHhhheeeeeccC
Q 007766 173 TSLIFLVAVGPSIVVMAFMFIVRPIGG 199 (590)
Q Consensus 173 ~~fllfla~~~~~v~l~~~~~ir~~~~ 199 (590)
+.+.+ +.+.+.+..++..+++--+|.
T Consensus 422 ~~~~~-~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 422 NNLWL-LILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred cchHH-HHHHHHHHHHHHHHHHHhCCC
Confidence 33333 333344444555555545554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.094 Score=57.37 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=84.2
Q ss_pred HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC---c---hhHHHHHHH
Q 007766 389 SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW---P---GEIYVTTVL 460 (590)
Q Consensus 389 s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~---~---~~l~~~~~l 460 (590)
.+|++... ...++..++..+.=.+.|++|||...|++-.|+|.+.......+...+++.... . ..+++...+
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 34555433 467788889999999999999998877776778876543333222222222211 1 123333445
Q ss_pred HHhhhhccchhhHHHHHHhhcc-cchhh----hhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCcc
Q 007766 461 VGLSYGAHWAIVPAAASELFGL-KSFGA----LYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF 535 (590)
Q Consensus 461 iG~~yG~~~~l~P~i~ad~FG~-k~~g~----nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~ 535 (590)
.+.+|....--+-++.+|+.-. |.-++ -.+...++..+++.+..| +.... +...
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~p-l~~~~----~~~~---------------- 177 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALP-LVDIL----GKGD---------------- 177 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----CCCc----------------
Confidence 5666665554555677776521 22222 233334444444443222 33221 1000
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 536 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 536 ~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
-...|+.++.+.+.++++..+++++..
T Consensus 178 ---------~~~g~~~~~~i~~ii~~v~~~~~~~~~ 204 (444)
T PRK09669 178 ---------EQKGYFYAMMVMGLLGVVLFFCCFFMT 204 (444)
T ss_pred ---------hhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 012588889888888877777666543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.032 Score=61.01 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=67.0
Q ss_pred HHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 007766 42 IKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVG 120 (590)
Q Consensus 42 Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~ 120 (590)
+++.+|.+.....++.+...++.. ..++.|++.||+|+|.++.+|.++..+|+.++++ .. ..+.|.+....++.
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~--~~---~~~~~~~~~~~~l~ 329 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW--VS---VWSLPVALVALAIA 329 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--cC---chhHHHHHHHHHHH
Confidence 355677766544444444344443 4678999999999999999999998889877653 21 12355555555566
Q ss_pred hcCccccchhhHHHHHHhCC--------CCCCchhhhhHhhhhhhHHH
Q 007766 121 TNGETYFNTAALVSCVQNFP--------KSRGPVVGILKGFAGLSGAI 160 (590)
Q Consensus 121 G~g~~~~~taal~t~~knFP--------~~RG~a~Gi~~a~~GLSa~i 160 (590)
|.|.+...+.......+.=| +++|...|+..-..-++.++
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai 377 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI 377 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence 66666555433333333222 12376666544443344333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.1 Score=56.86 Aligned_cols=151 Identities=16% Similarity=0.254 Sum_probs=85.4
Q ss_pred hhcccch-HHHHHHHHHH-HHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHH
Q 007766 9 KSFVNNR-WLVFVCSMWI-QSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLI 85 (590)
Q Consensus 9 ~~~~~~R-W~~l~as~~i-~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~i 85 (590)
|...+|| |..+...... ++..+..-.+..| -.+..+|.+ ...+.+.....++.. ..++.+++.||+|.|.+..+
T Consensus 219 ~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y--~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 219 RSLFRNRPFRILLLAFFLQWLAFALMNTFLPY--YFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred hhhcccchHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 3444444 5555544444 3444433333333 344445555 444555555555554 46788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhh--HHHHHHhC------CCCCCchhh----hhHhh
Q 007766 86 GVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAA--LVSCVQNF------PKSRGPVVG----ILKGF 153 (590)
Q Consensus 86 G~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taa--l~t~~knF------P~~RG~a~G----i~~a~ 153 (590)
|.++..+++.++++.-. .+.|.+++..++.|.+.+..+... +..-+-.+ .++.|...| ..|-.
T Consensus 296 ~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGP-----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred hHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 99999999988777532 134555666666666655444222 22211111 122354444 34555
Q ss_pred hhhhHHHHHHHHHH
Q 007766 154 AGLSGAILTQIYIM 167 (590)
Q Consensus 154 ~GLSa~i~s~i~~~ 167 (590)
.|+++.+...+-+.
T Consensus 371 ~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 371 QGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.14 Score=55.31 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=77.2
Q ss_pred cCcccccccccHH-HHHHhCCChhhHHH----HHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHh
Q 007766 29 AGIGYLFGSISPV-IKAHMGYNQRQVSL----LGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVT 102 (590)
Q Consensus 29 ~Gt~Y~fSvys~~-Lk~~l~~sq~~~~~----is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~ 102 (590)
.+..|.|.++--. +....+-+++++.. ++..-.++-. ..+++|.+.|++|.|.+++++.+..++-| +.|.+-+
T Consensus 41 ~~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~-ll~~~S~ 119 (451)
T KOG2615|consen 41 VSSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSY-LLWALSR 119 (451)
T ss_pred ccchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHH-HHHHHHH
Confidence 4888888877432 33334444432333 2222233332 25799999999999999999999999966 4465422
Q ss_pred cCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHH
Q 007766 103 NRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAI 160 (590)
Q Consensus 103 g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i 160 (590)
++....+.=+++|..-|=. .-+..-...=++ ++|+++.+..--.+|++-.+
T Consensus 120 ------~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfil 171 (451)
T KOG2615|consen 120 ------NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFIL 171 (451)
T ss_pred ------HHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhh
Confidence 2312223356677655533 233444555664 67999999999999998533
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.23 Score=55.54 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=77.6
Q ss_pred ccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchH--HHHHHHHHHH----HHHHHHHHHHHhcCCCCc
Q 007766 36 GSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVW--SINLIGVLQN----FVGYGLVWLIVTNRLPSL 108 (590)
Q Consensus 36 Svys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr--~~~~iG~~l~----~~GY~~~~l~~~g~i~s~ 108 (590)
+...--.++.+|++++|+..+.+..++.+.. .++.|++.||+||| .++.+.-++. ..|+..++ .......
T Consensus 302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~---~~~~g~~ 378 (477)
T PF11700_consen 302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFW---PSFFGLK 378 (477)
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhh---hcccCcc
Confidence 3333335668999999999988888888865 67899999999999 6666555443 12222111 1122123
Q ss_pred hHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhHhhhhhhHHH
Q 007766 109 PLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAI 160 (590)
Q Consensus 109 ~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~a~~GLSa~i 160 (590)
+-|.++++.++.|..+|..+.++=..-.|-=|+.|= +---++|++++-.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e---~efFgly~i~gk~ 427 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE---AEFFGLYAITGKA 427 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh---hHHHHHHHHHHHH
Confidence 457778888888888888887777777777786542 3334444444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.16 Score=55.51 Aligned_cols=137 Identities=15% Similarity=0.259 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHH
Q 007766 18 VFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGL 96 (590)
Q Consensus 18 ~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~ 96 (590)
-|++-.+.+=...|.-+++. ---++.+||++.|+-++++..++.+.+ ++++|++-||+|+|.++.+|-+...+-.
T Consensus 257 FLiA~~~~~DGv~til~~~~--~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~-- 332 (438)
T COG2270 257 FLIARFFYIDGVNTILAMGG--VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA-- 332 (438)
T ss_pred HHHHHHHHHhhHHHHHHHHH--HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH--
Confidence 44444444444444433321 113558999999999999999998865 7999999999999999999888765553
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCC-CchhhhhHhhhhhhHHHHHHH
Q 007766 97 VWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSR-GPVVGILKGFAGLSGAILTQI 164 (590)
Q Consensus 97 ~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~R-G~a~Gi~~a~~GLSa~i~s~i 164 (590)
++.. .... ...+| .++++.|...|-....+=.--.|+.|++| |.--|+- +.+|=.++++.+.
T Consensus 333 ~~~~-~~~~-~~~f~---i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgly-altgra~S~~gp~ 395 (438)
T COG2270 333 LYLI-FLEG-ELDFW---ILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLY-ALTGRAASFLGPF 395 (438)
T ss_pred HHHH-Hccc-cHHHH---HHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehh-hhhhhHHHHHHHH
Confidence 2222 2222 22233 56677777888888888889999998755 5444432 2233334444444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.044 Score=61.12 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=100.8
Q ss_pred hHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhccchhhHHH
Q 007766 399 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAA 475 (590)
Q Consensus 399 Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~---~~~~l~~~~~liG~~yG~~~~l~P~i 475 (590)
.|-+...-.++-+-.|++.||+|-|+.+ ....++.+++.++.... ....+.+.=++-|+++|..|..+..+
T Consensus 79 ~ss~~~G~i~~~iP~g~l~~k~G~r~v~------~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i 152 (466)
T KOG2532|consen 79 FSSFFWGYILGQIPGGYLADKFGARRVF------FISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSI 152 (466)
T ss_pred HHHHHHHHHHHHcCcHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhce
Confidence 3444444555667889999999876632 44444445444443221 12256788889999999999999999
Q ss_pred HHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHH
Q 007766 476 ASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 555 (590)
Q Consensus 476 ~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i 555 (590)
++.++-++.-++-.++++.+.-+|..+. -+++|.+-+... -++.+|++
T Consensus 153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~-mp~sg~lc~s~~-------------------------------GW~sifY~ 200 (466)
T KOG2532|consen 153 LAKWAPPNERSTFIAILTAGSQLGTIIT-MPVSGLLCESSL-------------------------------GWPSIFYV 200 (466)
T ss_pred eeeECCHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHhccCC-------------------------------CCchHHHH
Confidence 9999999999999999999999999874 458998887622 18999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007766 556 MAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 556 ~~~~~~~a~vls~~l~~ 572 (590)
.++++++-.++-.++..
T Consensus 201 ~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99988776666555544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.0093 Score=65.43 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=104.1
Q ss_pred HHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHH
Q 007766 385 QICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLV 461 (590)
Q Consensus 385 ~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~li 461 (590)
.+.+..+.++.. ..=.++.+.-.+.-.++|++.||.-|++-+ .+...+-.++.+.-.+.. -..+.++=.++
T Consensus 58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~v 131 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIWTLAVFASGFSNHFWQVLLCRGFV 131 (493)
T ss_pred HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444554432 344566677777788999999999887743 232222222222211111 23677888889
Q ss_pred HhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCC
Q 007766 462 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 541 (590)
Q Consensus 462 G~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (590)
|++--..-.+.|++++|.|--.+=|+-+|+.+.+.++|+.+ +-...+++-+.+.
T Consensus 132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl-G~vvgs~va~~~~------------------------- 185 (493)
T KOG1330|consen 132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL-GYVVGSVVASLTF------------------------- 185 (493)
T ss_pred ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce-eEEeeeeeccCcc-------------------------
Confidence 99999999999999999999999999999999999999875 3434444433332
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 007766 542 TCLGSICYSITCGIMAGLCIIAMVMSLIVVHR 573 (590)
Q Consensus 542 ~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~r 573 (590)
-+|..|.+.+.+.++..+|..++.+-
T Consensus 186 ------~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 186 ------WWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ------ceEEEEEeehHHHHHHHHHHHhhccC
Confidence 28888999999998888887765533
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=4 Score=45.83 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=93.6
Q ss_pred hhcccchHHHHHHHHHHHHhcCcc---cccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccch-HHHH
Q 007766 9 KSFVNNRWLVFVCSMWIQSCAGIG---YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPV-WSIN 83 (590)
Q Consensus 9 ~~~~~~RW~~l~as~~i~l~~Gt~---Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gp-r~~~ 83 (590)
+...+.+|.......+.++..+.. |.=|.|.-..|-..+-+.+-..++..+..+|- ++++..|....|.+. |.++
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 344567788777777777766654 33344433333346666666677544455555 578999999999886 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHH--HHHHhCCCCCCchhhhhHhhhhhh
Q 007766 84 LIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALV--SCVQNFPKSRGPVVGILKGFAGLS 157 (590)
Q Consensus 84 ~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~--t~~knFP~~RG~a~Gi~~a~~GLS 157 (590)
+.|.+...+|-.+ |+++..+.+. ..|+|.+.-++.|.|.+. .+.+. .+.++.|++|-++......++-+|
T Consensus 106 i~s~ii~~~g~ll-Y~~l~~~~~~-~~y~mL~~R~l~Gvg~~n--~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg 177 (488)
T KOG2325|consen 106 IVSFLIAIIGNLL-YLALAYVPNG-VKYLMLVARILTGVGVGN--FAVLRAYIADASTVEDRPRAFAATSGGFVLG 177 (488)
T ss_pred HHHHHHHHHHHHH-HHHHHhcccc-hHHHHHHHHHHcCcCccc--HHHHHHHHHhccCccchHHHHHHhhhHHHHH
Confidence 9999999999844 6666766543 344455566666766553 33444 455668888766666555544433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.096 Score=58.00 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=37.9
Q ss_pred ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccc
Q 007766 66 IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFN 128 (590)
Q Consensus 66 ~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~ 128 (590)
..++.|++.||+|+|.+..++.++..++...++.. +..+..+.|.+.+..++.|.+.+..+
T Consensus 282 ~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~g~~~~~~~ 342 (473)
T PRK10429 282 TLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLM--GLAAPHNALLIVIAGILLNIGTALFW 342 (473)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999998888776676554332 22222234444444555555555443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.046 Score=58.44 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=67.5
Q ss_pred cCcccccccccHHHHHHhCCChhhHHHHHHHHHHhh-hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007766 29 AGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGD-SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPS 107 (590)
Q Consensus 29 ~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~-~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s 107 (590)
.-.+|.|..| +++|++..|++.+=+++...+ .+|.+.|.+.||+|.|..+++-+++..+.. ++.+.+
T Consensus 52 LQGpY~Y~LY-----~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~sc------l~k~~~- 119 (354)
T PF05631_consen 52 LQGPYLYALY-----ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSC------LTKHSS- 119 (354)
T ss_pred hhcchhHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH------HHHhcc-
Confidence 3456888877 469999999999755555555 579999999999999999999999877773 345554
Q ss_pred chHHHHHHHHHHhhcCccccch
Q 007766 108 LPLWVLCIAIFVGTNGETYFNT 129 (590)
Q Consensus 108 ~~~~~l~~~~~l~G~g~~~~~t 129 (590)
.++.+.+.-+++|.+.+..++
T Consensus 120 -~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 120 -NYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred -ccHHHHHHHHHHHHHHHHHHH
Confidence 366677778888887665543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.042 Score=60.47 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=97.8
Q ss_pred ccchHHHHHHHHHHHHhcCc-ccccccccHHHHHHhCCChhhHHHHH-HHHHHhhhccCccceeeeccchHHHHHHHHHH
Q 007766 12 VNNRWLVFVCSMWIQSCAGI-GYLFGSISPVIKAHMGYNQRQVSLLG-VAKDLGDSIGFVPGTFVEILPVWSINLIGVLQ 89 (590)
Q Consensus 12 ~~~RW~~l~as~~i~l~~Gt-~Y~fSvys~~Lk~~l~~sq~~~~~is-~a~~~G~~~gi~~G~~~D~~gpr~~~~iG~~l 89 (590)
.+..|+.++.-+++++..=. -|+=.-=-+.+++.+|++.++..+++ +..-+.+..+++.|.+.||+.++.++.+|..+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34456666666666665422 13333345678889999999999984 44455556799999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhh
Q 007766 90 NFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGIL 150 (590)
Q Consensus 90 ~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~ 150 (590)
..+.-.. .+.+ ..+|++.+.=.+.|.|-...++.+-.--..+||+ +|+++-|+.
T Consensus 108 W~~Av~~-----~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~if 162 (493)
T KOG1330|consen 108 WTLAVFA-----SGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIF 162 (493)
T ss_pred HHHHHHH-----HHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHh
Confidence 7666533 4443 2589888887788889988889899999999995 799876643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.75 Score=44.69 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=74.7
Q ss_pred chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-C--chhHHHHHHHHHhhhhccchhhH
Q 007766 397 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-W--PGEIYVTTVLVGLSYGAHWAIVP 473 (590)
Q Consensus 397 ~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~--~~~l~~~~~liG~~yG~~~~l~P 473 (590)
...+...+....+.+.+|.++|+.|||+ ...+.... ..++.++.... . ...+.+...+.|+..|.......
T Consensus 43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 43 LLLSAFFLGYAIGSLLAGPLGDRYGRRK----VLIIGLLL--FLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchH----HHHHHHHH--HHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3566777777778899999999998762 22222211 22222222221 1 23555566668999999999999
Q ss_pred HHHHHhhcc-cchhhhhhHHHh-hhhhHHHHhhHhHHHHHHhh
Q 007766 474 AAASELFGL-KSFGALYNFLTL-ASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 474 ~i~ad~FG~-k~~g~nyG~~~~-a~~~g~~i~~~~l~g~iyd~ 514 (590)
++++|.+.. ++.+..++.... ...+|..+ ++.+++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 158 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLAL-GPLLAGLLLGA 158 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999987 678888888877 45666554 67677777766
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.5 Score=52.95 Aligned_cols=173 Identities=16% Similarity=0.153 Sum_probs=106.2
Q ss_pred HHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHH--h
Q 007766 26 QSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIV--T 102 (590)
Q Consensus 26 ~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~--~ 102 (590)
|..+| .++=..|+..+-++-|+++.+.....+...+-.. ..+.+.+++||.|+|..++++..++.+.-.++-... .
T Consensus 281 qq~sG-i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 281 QQFSG-INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred HHhcC-cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344 4456678899999999999988887666666554 478999999999999999999988776654433221 1
Q ss_pred cCCCCchHHHHH---HHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHH
Q 007766 103 NRLPSLPLWVLC---IAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFL 178 (590)
Q Consensus 103 g~i~s~~~~~l~---~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllf 178 (590)
.... ...++.| ++..+...+.|-+ .-+.--...=|| +.|..|........=++.++....+--+..-.+.|.++
T Consensus 360 ~~~~-~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~fi 437 (485)
T KOG0569|consen 360 NSFG-SWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFI 437 (485)
T ss_pred HHhh-hHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH
Confidence 1111 1222222 2344445555544 334555667786 57999998888887777776665554442222224443
Q ss_pred HHHhhHHHHHhhheeeeeccCCccc
Q 007766 179 VAVGPSIVVMAFMFIVRPIGGHRQV 203 (590)
Q Consensus 179 la~~~~~v~l~~~~~ir~~~~~~~~ 203 (590)
+=..|..+.. .++.|.+|++...
T Consensus 438 lF~i~~~~~~--i~~~~~lPETkgr 460 (485)
T KOG0569|consen 438 LFVIPLAIFL--IYLYRYLPETKGR 460 (485)
T ss_pred HHHHHHHHHH--HHHHHhCcccCCC
Confidence 3334444333 4445566665543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.6 Score=46.31 Aligned_cols=149 Identities=11% Similarity=0.104 Sum_probs=79.1
Q ss_pred HHhhhcH--HHHHHHHHHHhhhcccceeecchHHHH-HHhcCCc-cc----chhHHHHhhhhhccccccchhhhhhhccC
Q 007766 354 PQALMKA--DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYAD-TS----IYVSMISIWNFLGRVGGGYFSEAIVRKFA 425 (590)
Q Consensus 354 ~~~l~~~--~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g~~~-~~----~~Vsl~si~N~~GRl~~G~lSD~l~r~~~ 425 (590)
+++.+++ ..|-+|+++.... -..+.|-.|.. +...-++ .. ..-++..+..+++-+..|++..+..+
T Consensus 241 ~~~y~~~~ll~WSlWWa~atcg---y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~--- 314 (412)
T PF01770_consen 241 KSCYSNPRLLLWSLWWAFATCG---YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR--- 314 (412)
T ss_pred HHHhcCchHHHHHHHHHHHHhH---HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH---
Confidence 4445554 4688888776532 22222222222 2221111 11 13345555666777778877333322
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhh
Q 007766 426 YPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 426 ~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~ 504 (590)
-....+.+..++.+...+++.... ....|++-++.+.+|-...++.-.-++..--.+.||-.+|+ +.+-+.++-
T Consensus 315 -~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGi----Ntf~Al~LQ 389 (412)
T PF01770_consen 315 -WGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGI----NTFVALVLQ 389 (412)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeee----HHHHHHHHH
Confidence 112334444555554444444332 45678888888888888888877777776666666666664 333344444
Q ss_pred HhHHHHHHh
Q 007766 505 GVIASGIYD 513 (590)
Q Consensus 505 ~~l~g~iyd 513 (590)
..+--.+.|
T Consensus 390 tilT~iV~d 398 (412)
T PF01770_consen 390 TILTLIVVD 398 (412)
T ss_pred HheEEEEEc
Confidence 544444555
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.82 Score=48.91 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhc--C--c------hhHHHHHHHHHhhhhccchhhHHHHHHhhcccc---hhhhhhHHHhhhhh
Q 007766 432 MAVAQVVMAFALLYYAIG--W--P------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS---FGALYNFLTLASPA 498 (590)
Q Consensus 432 l~~~~~l~~~~~l~~~~~--~--~------~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~---~g~nyG~~~~a~~~ 498 (590)
+.+..++.++|++++... . . ..++++-.+++++.|+.=+..+++.+|-|-.++ -..-|.+.+.+.-+
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~ 83 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI 83 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 456777788887763321 1 1 469999999999999999999999999997652 34457778888889
Q ss_pred HHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHh
Q 007766 499 GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 570 (590)
Q Consensus 499 g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l 570 (590)
|+++ +..+.+++-|.. +|...|.+.+...+++++.-+.-
T Consensus 84 G~~~-~~~~~~~i~~~~--------------------------------~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 84 GSLF-SPTLVPYIQQNY--------------------------------GWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHH-HHHCCCHHHHCS---------------------------------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHh-hcccchhhcccc--------------------------------chhhhhhHHHHHHHHHHHHHHhC
Confidence 9876 676777776543 49999999998887777655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.9 Score=46.32 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHHhcCCcccc---hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI---YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~~---~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
++|...|.....+-..---|++ ...++.|++..++ ++.=+. .+.+-..+.|.+.||+|||+.. .+..
T Consensus 37 r~yl~vY~La~~aDWLQGpY~Y---~LY~~yg~~~~qIa~Lf~~Gf~-Ss~i~g~~~G~laD~~Grk~~c------l~~c 106 (354)
T PF05631_consen 37 RKYLLVYLLAMAADWLQGPYLY---ALYESYGFSEHQIAILFVAGFA-SSAIFGTFVGSLADRYGRKKAC------LLFC 106 (354)
T ss_pred HHHHHHHHHHHHHHHhhcchhH---HHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchHHH------HHHH
Confidence 5666666655444433222333 3345566665542 222111 2233345678899999997743 3444
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHH-HHHh----hcccchhhhhhHHH-hhhhhHHH
Q 007766 437 VVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAA-ASEL----FGLKSFGALYNFLT-LASPAGSL 501 (590)
Q Consensus 437 ~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i-~ad~----FG~k~~g~nyG~~~-~a~~~g~~ 501 (590)
++-.++++.........|+++-++-|++.=-.++.|=+- +.|. |..+..+..++.+. +.+++-++
T Consensus 107 ily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI 177 (354)
T PF05631_consen 107 ILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAI 177 (354)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH
Confidence 555666666666666689999999999999888888764 4443 22233455556554 45554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.1 Score=48.85 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=70.7
Q ss_pred ccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHH-------HHh---c--Cc-----hhHHHHHHHHHhhhhccchh
Q 007766 409 GRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY-------YAI---G--WP-----GEIYVTTVLVGLSYGAHWAI 471 (590)
Q Consensus 409 GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~-------~~~---~--~~-----~~l~~~~~liG~~yG~~~~l 471 (590)
-|..+|..||+-....++.|+=.+....++++.+..+ +.. . .+ ....++..++|++.+..-+-
T Consensus 30 ~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~ 109 (403)
T PF03209_consen 30 LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTS 109 (403)
T ss_pred HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHH
Confidence 4999999999987233333433444444333333222 222 0 01 25667788889999999999
Q ss_pred hHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 472 VPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 472 ~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
+-++.+|.=..|+=++-=+++++.-.+|-.+ +..+.|.+-|...
T Consensus 110 ~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv-~ai~~g~lL~~~s 153 (403)
T PF03209_consen 110 FLALLADLAPEERRPRVVAIVWVMLIVGIIV-SAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccccC
Confidence 9999999999999888877777666666554 5667777776544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.51 Score=52.65 Aligned_cols=147 Identities=23% Similarity=0.271 Sum_probs=96.9
Q ss_pred hcccchHHHHHHHHHHHHhc--Ccc-cccccccHHHHHHhCCChhhHHHH-HHHHHHhhhccCccc-eeeeccchHHHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCA--GIG-YLFGSISPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPG-TFVEILPVWSINL 84 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~--Gt~-Y~fSvys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G-~~~D~~gpr~~~~ 84 (590)
+..++.+..+..+..+-+-- |.. .. -.| ||.+++|++++.+.+ +...-++....++.. .+.-.+|-+.++.
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~-~~y---l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~ 312 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVL-LLY---LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLIS 312 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEE-EEE---EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 45566677666666553322 222 22 333 788999999999974 666666655444444 7777788888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHH-HHhCCCCCCchhhhhHhhhhhhHHHHHH
Q 007766 85 IGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSC-VQNFPKSRGPVVGILKGFAGLSGAILTQ 163 (590)
Q Consensus 85 iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~-~knFP~~RG~a~Gi~~a~~GLSa~i~s~ 163 (590)
+|-....+++.+.... + ..|+++...++.+.+.. ..++--... .-..||++|++-++....-+|++.+.+.
T Consensus 313 lGl~~~~~~~~~~af~-~------~~w~~~~~~v~~~~~~~-~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~ 384 (463)
T KOG2816|consen 313 LGLLSEFLQLLLFAFA-T------ETWMMFAAGVVVALAGI-VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPA 384 (463)
T ss_pred HHHHHHHHHHHHHHHh-c------cchhhhHHHHHHHhhcc-hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHH
Confidence 9999988887553331 1 24777777666654333 323333333 3334899999999999999988888777
Q ss_pred HHHHh
Q 007766 164 IYIMI 168 (590)
Q Consensus 164 i~~~~ 168 (590)
++..+
T Consensus 385 ~~~~i 389 (463)
T KOG2816|consen 385 LYGNI 389 (463)
T ss_pred HHHHH
Confidence 77654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.07 E-value=25 Score=39.33 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=78.4
Q ss_pred hhHHHHhhhhhcccccc-chhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHhhhhccchhhHHH
Q 007766 398 YVSMISIWNFLGRVGGG-YFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPG-EIYVTTVLVGLSYGAHWAIVPAA 475 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G-~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~-~l~~~~~liG~~yG~~~~l~P~i 475 (590)
+.++.++.+..+-++.. .++-.++.++ .+.+......+..+++++.... ..|...+..++ -+..+..+=++
T Consensus 282 ~~~~~~~~~~i~~l~~~~~l~~~l~~~~------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~-~~~~~pa~~s~ 354 (463)
T KOG2816|consen 282 LLSLVSILGIISQLLLLPLLSSILGEKR------LISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL-AGIVFPAIRAF 354 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh------HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh-hcchhHHHHhH
Confidence 55566666666666655 5665555433 3356666666666667766544 44555544444 44556666778
Q ss_pred HHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhh
Q 007766 476 ASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK 518 (590)
Q Consensus 476 ~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~ 518 (590)
++.+=+.++.|+++++++..-++.+.+ +|.+.+.+|-.+...
T Consensus 355 ~s~~v~~~e~g~v~~~is~i~~l~~~~-~~~~~~~i~~~t~~~ 396 (463)
T KOG2816|consen 355 ASILVSPEEQGKVFGIISGIEGLSGVV-SPALYGNIFALTLDD 396 (463)
T ss_pred HHhhcccccccchhhHHHHHHHHhhhh-hHHHHHHHHHHHHHh
Confidence 888889999999999999999999886 688999999877644
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=89.96 E-value=2.2 Score=43.68 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=74.7
Q ss_pred HHHhhhcccceeecch--HHHHHHhcCCcccc-hhH-HHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHH
Q 007766 368 SLVLASGSGLTVIDNL--GQICQSLGYADTSI-YVS-MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL 443 (590)
Q Consensus 368 ~~~~~~g~Glm~i~n~--~~I~~s~g~~~~~~-~Vs-l~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~ 443 (590)
...+...+|..|.... .++-+.++++..++ .++ .-.+...+| +.+|.+.|+.+.+ . .+.+..+...+|+
T Consensus 8 ~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~-----~-~l~iG~~~~~~GY 80 (250)
T PF06813_consen 8 SIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW-----V-VLLIGAVLGFVGY 80 (250)
T ss_pred HHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH-----H-HHHHHHHHHHHHH
Confidence 3555566677766532 34445677776542 222 223334455 7889999998642 2 2356666667776
Q ss_pred HHHH--hcC--c-hhHHHHHHHHHhh-hhccchhhH--HHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHh
Q 007766 444 LYYA--IGW--P-GEIYVTTVLVGLS-YGAHWAIVP--AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD 513 (590)
Q Consensus 444 l~~~--~~~--~-~~l~~~~~liG~~-yG~~~~l~P--~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd 513 (590)
.++. ... + ..++.......+. .|..|--.. ....+.| ++|=|+-=|++-...++++.+++. +...+++
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~-i~~~~f~ 156 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQ-IYSAFFG 156 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHH-HHHHHcC
Confidence 5443 221 1 1222222222222 233332223 2334677 678888888888888888888754 5555554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.1 Score=41.50 Aligned_cols=111 Identities=23% Similarity=0.231 Sum_probs=68.9
Q ss_pred ccHHHHHHhCCCh--hhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 007766 38 ISPVIKAHMGYNQ--RQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLC 114 (590)
Q Consensus 38 ys~~Lk~~l~~sq--~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~ 114 (590)
..+.+...++.+. .+...+.....++... .++.|.+.||+|+|....++......+..+..+ .. +...+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~ 98 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL--AP---NVGLALLL 98 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh--Cc---cchHHHHH
Confidence 3444455555554 3555555555555544 389999999999887777777653444222111 11 12345455
Q ss_pred HHHHHhhcCccccchhhHHHHHHhCCC--CCCchhhhhHhh
Q 007766 115 IAIFVGTNGETYFNTAALVSCVQNFPK--SRGPVVGILKGF 153 (590)
Q Consensus 115 ~~~~l~G~g~~~~~taal~t~~knFP~--~RG~a~Gi~~a~ 153 (590)
....+.|.+.+..+........+++|+ +|+...++....
T Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (338)
T COG0477 99 ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLG 139 (338)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 555556777777777788888889996 778777777664
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.12 Score=58.77 Aligned_cols=74 Identities=22% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHhcCcccccccccHHHHHHhCCChhhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHH
Q 007766 22 SMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLV 97 (590)
Q Consensus 22 s~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~ 97 (590)
..++| ..-..|.-++-+ .+.+||+++.+|..+|..+-|++..+ .++...+-+|...-.-+.+|+++.++|.++.
T Consensus 11 ~~~~q-~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 11 LGLFQ-MMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence 33445 444446655555 89999999999999999999999964 6667777776554445667888888887663
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.91 E-value=3.7 Score=45.89 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=53.5
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcC----c--hhHHHHHHHHHhhhhcc---
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW----P--GEIYVTTVLVGLSYGAH--- 468 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~----~--~~l~~~~~liG~~yG~~--- 468 (590)
.-.+--++.++.=.+.|+++||..+|++--|||++..+.-+..+..+++.... . ...++.=++.+++|=..
T Consensus 53 iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniP 132 (467)
T COG2211 53 IFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIP 132 (467)
T ss_pred HHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCc
Confidence 44566677888889999999999988888899998877766666554444331 1 13444445556666553
Q ss_pred -chhhHHHHHH
Q 007766 469 -WAIVPAAASE 478 (590)
Q Consensus 469 -~~l~P~i~ad 478 (590)
.++.|.+|.|
T Consensus 133 y~al~~~iT~d 143 (467)
T COG2211 133 YGALGPEITQD 143 (467)
T ss_pred hhhcchhhcCC
Confidence 3445555554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.4 Score=41.81 Aligned_cols=85 Identities=18% Similarity=0.056 Sum_probs=60.9
Q ss_pred hccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCC
Q 007766 65 SIGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSR 143 (590)
Q Consensus 65 ~~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~R 143 (590)
...+++..+.++.|||+++++|++. |.+.-+. ...+ ..|.+....++.|.|.+...++--..-+++-. ++|
T Consensus 52 ~s~l~~P~iv~~lg~K~sm~lg~~~----y~~y~~~--~~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~ 123 (156)
T PF05978_consen 52 ISCLFAPSIVNKLGPKWSMILGSLG----YAIYIAS--FFYP--NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI 123 (156)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHH----HHHHHHH--HHhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence 3456778889999999999999984 4432222 2222 24556677888899999888877666666664 458
Q ss_pred CchhhhhHhhhhhh
Q 007766 144 GPVVGILKGFAGLS 157 (590)
Q Consensus 144 G~a~Gi~~a~~GLS 157 (590)
++-.|+-.+.+-.|
T Consensus 124 ~~~~~ifw~i~~~s 137 (156)
T PF05978_consen 124 GRNTGIFWAIFQSS 137 (156)
T ss_pred hhHHHHHHHHHHHH
Confidence 99889888887765
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.64 E-value=3.5 Score=45.03 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=80.7
Q ss_pred hhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc----CchhHHHHHHHHHhhhhccchhhHHHHHHhhcc
Q 007766 407 FLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL 482 (590)
Q Consensus 407 ~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~----~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~ 482 (590)
+.+-+-.|++-+|+++|.++ .+...++++++.++... ....+..+..++|.+-|-.-+..=+.+..+.-.
T Consensus 62 f~~~lpa~~~~kk~gyk~gi------~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 62 FIMSLPAGLLIKKLGYKAGI------VLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred HHHhccHHHHHHHhhhHHHH------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 34566778888888887765 78888888888776422 124566667788888888888888899999888
Q ss_pred cchhhhhhHHHhhhhhHHHHhhHhHHHHHHhh
Q 007766 483 KSFGALYNFLTLASPAGSLIFSGVIASGIYDY 514 (590)
Q Consensus 483 k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~ 514 (590)
++-...-+++..-+++|+.+ +|.+.+++-++
T Consensus 136 ~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils 166 (422)
T COG0738 136 ESAAFRLNLAQAFNGLGAIL-GPLLGSSLILS 166 (422)
T ss_pred hhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHh
Confidence 88899999999999999987 79999988885
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=87.23 E-value=2.2 Score=40.51 Aligned_cols=85 Identities=8% Similarity=0.063 Sum_probs=56.9
Q ss_pred cccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhh
Q 007766 410 RVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALY 489 (590)
Q Consensus 410 Rl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~ny 489 (590)
-++.+.+.++++.|+.+ ++..+..++-...........+++++++.|++.+-.|.--...+.+.-=.++.++|.
T Consensus 54 ~l~~P~iv~~lg~K~sm------~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~ 127 (156)
T PF05978_consen 54 CLFAPSIVNKLGPKWSM------ILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNT 127 (156)
T ss_pred HHhHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHH
Confidence 35567788899886643 443333332211222233457999999999999999999999999888777788886
Q ss_pred hHHHhhhhhHH
Q 007766 490 NFLTLASPAGS 500 (590)
Q Consensus 490 G~~~~a~~~g~ 500 (590)
|+...-.-.+.
T Consensus 128 ~ifw~i~~~s~ 138 (156)
T PF05978_consen 128 GIFWAIFQSSL 138 (156)
T ss_pred HHHHHHHHHHH
Confidence 66544444433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=84.81 E-value=3.6 Score=47.97 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=49.3
Q ss_pred HHHHhCCChhhHHHH-HHHHHHhhhccCccceeeecc-chHHHHHHHHHHHHHHHHHHHH
Q 007766 42 IKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEIL-PVWSINLIGVLQNFVGYGLVWL 99 (590)
Q Consensus 42 Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~-gpr~~~~iG~~l~~~GY~~~~l 99 (590)
+.+.+|+++++...+ +....+.-.+++++|.+.|++ |.+.++++|+++..+|+.++.+
T Consensus 14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 566799999988774 777777767899999999987 9999999999999999977654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.46 E-value=11 Score=42.82 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 454 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 454 l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
++....+.++.-|+.+.+.--+..+.- .++.|.+-|-++....+|+.+ ++.+++.+-
T Consensus 113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~-G~l~~~~vL 169 (521)
T PRK03612 113 LYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALV-GGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHH-HHHHHHHHH
Confidence 455566778888988666665555432 234555555555555666554 444555443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=18 Score=40.12 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=31.1
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV 438 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l 438 (590)
...+--++.++-=.+.|.+|||...|++--|||++.....+
T Consensus 50 i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~ 90 (460)
T PRK11462 50 MFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF 90 (460)
T ss_pred HHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH
Confidence 55566677778888999999999877777789986654433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.38 E-value=6.4 Score=43.92 Aligned_cols=153 Identities=16% Similarity=0.310 Sum_probs=108.5
Q ss_pred hcccchHHHHHHHHHHHHhcCcccccccccHHHHHH--hCCChhhHHHH-HHHHHHhhhc-cCcccee---eeccchHHH
Q 007766 10 SFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAH--MGYNQRQVSLL-GVAKDLGDSI-GFVPGTF---VEILPVWSI 82 (590)
Q Consensus 10 ~~~~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~--l~~sq~~~~~i-s~a~~~G~~~-gi~~G~~---~D~~gpr~~ 82 (590)
+..+++++.++.=...-...-+.|-.|+|-..+.-. .+.+...+..+ ++...+|... |++.+.+ .+++|.+.+
T Consensus 235 ~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~ 314 (461)
T KOG3098|consen 235 KLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT 314 (461)
T ss_pred HHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc
Confidence 445666666665555555556677788888888765 33343444333 6666666654 5555544 466789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-----------CchHHHHHHHHHHhhcCccccchhhHHHHHHhCCCCCCchhhhhH
Q 007766 83 NLIGVLQNFVGYGLVWLIVTNRLP-----------SLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPKSRGPVVGILK 151 (590)
Q Consensus 83 ~~iG~~l~~~GY~~~~l~~~g~i~-----------s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~~RG~a~Gi~~ 151 (590)
..+|.+++..++.+..+..-...| .+++....+..++-|.|.+..++...+.+..-+||+|-.+-.+.+
T Consensus 315 ~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~k 394 (461)
T KOG3098|consen 315 VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFK 394 (461)
T ss_pred hhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999999999999887776544332 112322344577789999999999999999999999999999999
Q ss_pred hhhhhhHHHHH
Q 007766 152 GFAGLSGAILT 162 (590)
Q Consensus 152 a~~GLSa~i~s 162 (590)
-+.++.+.+..
T Consensus 395 fyq~~~s~v~~ 405 (461)
T KOG3098|consen 395 FYQSVASCVAF 405 (461)
T ss_pred HHHHHHHHHHh
Confidence 99998886644
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.31 E-value=6.2 Score=41.56 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=89.7
Q ss_pred hhhhcccchHHHHHHHHHHHHhcCcccccccccHHHHHHhCCChhhHHHH-HHHHHHhhhccCccceeeeccchHHHHHH
Q 007766 7 RLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMGYNQRQVSLL-GVAKDLGDSIGFVPGTFVEILPVWSINLI 85 (590)
Q Consensus 7 ~~~~~~~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~~sq~~~~~i-s~a~~~G~~~gi~~G~~~D~~gpr~~~~i 85 (590)
-++.....-|++.+.+++--+..-.-|+- =.--..+++|+|..+.+.| ++.-.+...+.++.|.+.||+|.++....
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~l--g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~ 335 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITL--GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA 335 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhh--hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence 35566677788887776654443222211 1122678999999888875 77777777788999999999997666555
Q ss_pred HHHHHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhC-CCC-CCchhhhhHhhhhhhHHHHH
Q 007766 86 GVLQNF-VGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNF-PKS-RGPVVGILKGFAGLSGAILT 162 (590)
Q Consensus 86 G~~l~~-~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knF-P~~-RG~a~Gi~~a~~GLSa~i~s 162 (590)
.+.... .|-.+. +++-. + |+.-++ +.|.+-. ...+++=.|+..- |++ -|++-|...+..-|+=++.+
T Consensus 336 ~a~~~tl~~H~~l--~Ft~l--s-Py~~m~----~lGLsys-llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~ 405 (459)
T KOG4686|consen 336 SACILTLLGHSGL--FFTFL--S-PYTSMT----FLGLSYS-LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIP 405 (459)
T ss_pred HHHHHHHHHhhhH--Hhhhc--c-HHHHHH----HHhhhHH-HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHh
Confidence 554433 333222 22211 1 222233 3333222 1133344455444 765 69999999998888866665
Q ss_pred HHHHHh
Q 007766 163 QIYIMI 168 (590)
Q Consensus 163 ~i~~~~ 168 (590)
-|...+
T Consensus 406 Iiag~i 411 (459)
T KOG4686|consen 406 IIAGFI 411 (459)
T ss_pred hhhhee
Confidence 555444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.04 E-value=1.8 Score=46.99 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=74.0
Q ss_pred CccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HHH-hhcCccccchhhHHHHHHhCCCC-CC
Q 007766 68 FVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIA-IFV-GTNGETYFNTAALVSCVQNFPKS-RG 144 (590)
Q Consensus 68 i~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~-~~l-~G~g~~~~~taal~t~~knFP~~-RG 144 (590)
++.|.++||+|.|.++..--+++.+--++...+.+..+ ..+ ++|.+ .++ ++++..+.|| -.-||.. |+
T Consensus 399 LIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~--~tv-llf~arafisg~fqvaYvYt------PEVyPTavRa 469 (528)
T KOG0253|consen 399 LITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNA--YTV-LLFTARAFISGAFQVAYVYT------PEVYPTAVRA 469 (528)
T ss_pred hHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcch--hHH-HHHHHHHHHhchheEEEEec------Ccccchhhhh
Confidence 57889999999999998887776555444443322221 122 24554 555 4555555554 5668865 99
Q ss_pred chhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHhhheee
Q 007766 145 PVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMAFMFIV 194 (590)
Q Consensus 145 ~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~~~~~i 194 (590)
+.+|.-.+.-=.+|.+-..|+ ...+.....-+++--.+.+.+.++.+|+
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheee
Confidence 999999888888775444444 2255555555565555666666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 590 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.89 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.88 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.72 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.71 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.68 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.52 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.49 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.94 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.82 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.78 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.68 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.67 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.12 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.1 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=215.91 Aligned_cols=404 Identities=13% Similarity=0.137 Sum_probs=263.8
Q ss_pred cccchHHHHHHHHHHHHhcC-cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHH
Q 007766 11 FVNNRWLVFVCSMWIQSCAG-IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVL 88 (590)
Q Consensus 11 ~~~~RW~~l~as~~i~l~~G-t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~ 88 (590)
..+.||..+....+..+..+ ..+.++.+-|.+.+++ +|.++.+++.....++.. ..++.|.+.||+|+|.++.+|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34556777666666665555 3477888889999999 999999998777777775 48899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHH
Q 007766 89 QNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIM 167 (590)
Q Consensus 89 l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~ 167 (590)
+..++..+..+.... .+ ++|.+.+..++.|.+.+..+.+......++|| ++||.+.|+.....+++..+-..+...
T Consensus 101 ~~~~~~~~~~~~~~~-~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWA-TS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHCHHH-HS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHhhhhc-cc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988765441110 11 24456667778888888888999999999998 569999999999998887766554432
Q ss_pred hcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCC-cchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHH
Q 007766 168 ISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDN-TSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLA 246 (590)
Q Consensus 168 ~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 246 (590)
+ + . ..+ .+..+.. .++..
T Consensus 178 l--------~-----------------~----------~~g~w~~~f~~-----~~~~~--------------------- 196 (451)
T 1pw4_A 178 G--------M-----------------A----------WFNDWHAALYM-----PAFCA--------------------- 196 (451)
T ss_dssp H--------H-----------------H----------HTCCSTTCTHH-----HHHHH---------------------
T ss_pred H--------H-----------------H----------HhccHHHHHHH-----HHHHH---------------------
Confidence 2 0 0 000 1111100 00000
Q ss_pred HHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHH
Q 007766 247 VGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQA 326 (590)
Q Consensus 247 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (590)
.+..+++.. +.+++++..+.+ + +++ .+++.+++ . ++
T Consensus 197 ~~~~~~~~~---------~~~~~~~~~~~~---~----~~~-------------~~~~~~~~---------~---~~--- 232 (451)
T 1pw4_A 197 ILVALFAFA---------MMRDTPQSCGLP---P----IEE-------------YKNDYPDD---------Y---NE--- 232 (451)
T ss_dssp HHHHHHHHH---------HCCCSSTTTCCC---S----CTT-------------TCCC----------------------
T ss_pred HHHHHHHHh---------hccCCHhhcCCC---C----hhh-------------hccccccc---------c---hh---
Confidence 000000000 001110000000 0 000 00000000 0 00
Q ss_pred HHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHH
Q 007766 327 KLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMIS 403 (590)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~s 403 (590)
.+ ++ +....+...++.+|++++|.+.+..++.......+......+.++ .|.+... ...++.+
T Consensus 233 --------~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 233 --------KA---EQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 298 (451)
T ss_dssp --------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred --------hh---hc---ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 00 000112235788999999999888777666555555555555555 5665543 4778889
Q ss_pred hhhhhccccccchhhhh--hhccCCchhHHHHHHHHHHH-HHHHHHHhc---CchhHHHHHHHHHhhhhccchhhHHHHH
Q 007766 404 IWNFLGRVGGGYFSEAI--VRKFAYPRPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAAS 477 (590)
Q Consensus 404 i~N~~GRl~~G~lSD~l--~r~~~~~R~~~l~~~~~l~~-~~~l~~~~~---~~~~l~~~~~liG~~yG~~~~l~P~i~a 477 (590)
+.+.+|++++|+++||+ +|++ .. .+...+.. ++++++... ....+.+...+.|+++++.+....+++.
T Consensus 299 ~~~~~~~~~~g~l~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKVFRGNRG-----AT-GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHH-----HH-HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCch-----hH-HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 99999999999999999 7643 22 23333322 444444332 2335677788899999999999999999
Q ss_pred HhhcccchhhhhhHHHhhhhh-HHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHH
Q 007766 478 ELFGLKSFGALYNFLTLASPA-GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM 556 (590)
Q Consensus 478 d~FG~k~~g~nyG~~~~a~~~-g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~ 556 (590)
|.+..++.|+.+|+......+ |..+ +|.+.|.++|..+ |+..|.+.
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~-~~~~~g~l~~~~g--------------------------------~~~~~~~~ 419 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVA-ASAIVGYTVDFFG--------------------------------WDGGFMVM 419 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSC--------------------------------SHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC--------------------------------cHHHHHHH
Confidence 999999999999999998888 8876 7889999998654 89999999
Q ss_pred HHHHHHHHHHHHHhhhhhhH
Q 007766 557 AGLCIIAMVMSLIVVHRTKS 576 (590)
Q Consensus 557 ~~~~~~a~vls~~l~~r~r~ 576 (590)
+++++++.++.+++.++.++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 420 IGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999988888776554444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=209.10 Aligned_cols=381 Identities=13% Similarity=0.122 Sum_probs=243.5
Q ss_pred ccchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHH
Q 007766 12 VNNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQ 89 (590)
Q Consensus 12 ~~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l 89 (590)
.+++|..++......+..|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.++.+|.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 344555555555555555543 688888999999999999999998777777765 588999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 90 NFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 90 ~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
..++..+.+.. ... .++|.+++..++.|.|.+..++++.....+++| ++||.+.|+.-...+++..+-..+...+
T Consensus 101 ~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776543 222 347777778888899999999999999999998 5789999999999999987776554433
Q ss_pred -cCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHH
Q 007766 169 -SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAV 247 (590)
Q Consensus 169 -~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 247 (590)
....... .-+.....+++....+...... ..-..|.+.. ....
T Consensus 177 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~---------------~~~~ 220 (438)
T 3o7q_A 177 ILSNVPHQ--------------------SQDVLDKMSPEQLSAYKHSLVL-SVQTPYMIIV---------------AIVL 220 (438)
T ss_dssp HHTSSCCC--------------------CHHHHHHSCHHHHHHHHHHHHH-HHHHHHHHHH---------------HHHH
T ss_pred Hhcccccc--------------------cccccccCCcchhhhhhhhhhh-hHHHHHHHHH---------------HHHH
Confidence 0100000 0000000000000000000000 0000110000 0000
Q ss_pred HHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHH
Q 007766 248 GLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAK 327 (590)
Q Consensus 248 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (590)
+..+ ++. +.+.| | ++ + ++ .++++.
T Consensus 221 ~~~~-~~~---------~~~~p-~---~~---~---~~---------------~~~~~~--------------------- 244 (438)
T 3o7q_A 221 LVAL-LIM---------LTKFP-A---LQ---S---DN---------------HSDAKQ--------------------- 244 (438)
T ss_dssp HHHH-HHH---------HCCCC-C---CT---T---TC---------------CCCSST---------------------
T ss_pred HHHH-HHH---------HHcCC-c---cc---c---cc---------------cccccc---------------------
Confidence 0000 000 01111 0 00 0 00 000000
Q ss_pred HHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HHHh-cCCccc--chhHHHH
Q 007766 328 LFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTS--IYVSMIS 403 (590)
Q Consensus 328 ~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s~-g~~~~~--~~Vsl~s 403 (590)
+ ....++++.+|++++|.+.+..++..+....+.+.+..+ .++. |.+... ...++..
T Consensus 245 -----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 305 (438)
T 3o7q_A 245 -----------------G--SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_dssp -----------------T--SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred -----------------c--chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence 0 001234678999999999999888877777777777777 6665 766543 4777889
Q ss_pred hhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhccc
Q 007766 404 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK 483 (590)
Q Consensus 404 i~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k 483 (590)
+.+.+||+++|+++||++|++. +....++.+++.+++.........+...++|+++|..+....+++.|.++.+
T Consensus 306 ~~~~~~~~~~g~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRFAPHKV------LAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHHHHHhcchHH------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999988652 2444455555554444444334455668899999999999999999999865
Q ss_pred chhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 484 SFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 484 ~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
-++.-++...+ .+|+.+ +|.+.|.++|..+
T Consensus 380 -~~~~~~~~~~~-~~g~~~-~~~~~g~l~~~~g 409 (438)
T 3o7q_A 380 -TKYGSSFIVMT-IIGGGI-VTPVMGFVSDAAG 409 (438)
T ss_dssp -HHHHHHHHHHT-THHHHH-HHHHHHHHHHHHT
T ss_pred -ccchhhHHHHH-HHHHHH-HHHHHHHHHHHhc
Confidence 66666766644 477765 6889999999766
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-16 Score=166.67 Aligned_cols=417 Identities=12% Similarity=0.017 Sum_probs=229.7
Q ss_pred ccHHHHHH-----hCCChhhHHHHHHHHHHhhh-ccCccceeeec-cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 007766 38 ISPVIKAH-----MGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEI-LPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPL 110 (590)
Q Consensus 38 ys~~Lk~~-----l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~-~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~ 110 (590)
..+-+++. +|+|.++.+++.....++.. ..+++|.+.|| +|+|.++.+|.++..++..+.. ..+ ++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-----~~~--~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-----LPF--GA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-----SCC--ST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-----Hhh--hH
Confidence 34446666 99999999998666677665 57899999999 8999999999999888875532 222 34
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCC-CC--CCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHHhhHHH
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFP-KS--RGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPSIV 186 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~--RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~~~~~v 186 (590)
+.+.+..++.|.|.+...++......++|| ++ ||.+.++.-....+++.+-..+...+ +.......+.+.....++
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556667777888888888888888999997 45 56677777788888877766666655 322223333333333333
Q ss_pred HHhhheeeeeccCCcc-ccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceeccc
Q 007766 187 VMAFMFIVRPIGGHRQ-VRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVF 265 (590)
Q Consensus 187 ~l~~~~~ir~~~~~~~-~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 265 (590)
+++...+.++-...+. ++++......-... . .+..........+..+ ... .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--~~~~g~~l~~~~~~~~-~~~----~---- 240 (491)
T 4aps_A 189 GLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP-----------------L--LVKVSLAVAGFIAIIV-VMN----L---- 240 (491)
T ss_dssp HHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH-----------------H--HHHCCCCCHHHHHHHH-HHH----H----
T ss_pred HHHHHHHhCcccccccccCCCCccccchhHH-----------------H--HHHHHHHHHHHHHHHH-HHH----h----
Confidence 3333333332211111 11111110000000 0 0000000000000000 000 0
Q ss_pred ccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh-hhhhhhhcccCC
Q 007766 266 FTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAA-AEGAVRVKRRKG 344 (590)
Q Consensus 266 ~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 344 (590)
.+.. + .+++ .... .... ...+. ..... .++
T Consensus 241 ~~~~-~-~~~~----------------~~~~-----------------------~~~~----~~~~~~~~~~~-~~~--- 271 (491)
T 4aps_A 241 VGWN-S-LPAY----------------INLL-----------------------TIVA----IAIPVFYFAWM-ISS--- 271 (491)
T ss_dssp HSSC-C-TTHH----------------HHHH-----------------------HHHH----HHHHHHHHHHH-C-----
T ss_pred ccCc-c-cccc----------------hhhh-----------------------hHHH----HHHHHHHHHHH-hhc---
Confidence 0000 0 0000 0000 0000 00000 00000 000
Q ss_pred CCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCC--cccchhHHHHhhhhhccccccchhhhhh
Q 007766 345 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYA--DTSIYVSMISIWNFLGRVGGGYFSEAIV 421 (590)
Q Consensus 345 p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~--~~~~~Vsl~si~N~~GRl~~G~lSD~l~ 421 (590)
+ ..+..+..+...++.+++...+....-....+.+....++ .+.+ ......++.++...++..+.|+++||++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 272 V----KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred c----cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 0 0000111222334444444333333222333344444444 3333 2335677888899999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHh----------cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhH
Q 007766 422 RKFAYPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF 491 (590)
Q Consensus 422 r~~~~~R~~~l~~~~~l~~~~~l~~~~----------~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~ 491 (590)
||+.. +...+.....+..++++++.. .....+.+...+.|++.|.......+++.|.+..++-|+..|+
T Consensus 348 ~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 348 KNQPS-SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp TC----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred ccCCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 87643 233344555555555433322 1234577788899999999999999999999999999999999
Q ss_pred HHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 492 LTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 492 ~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
..+...+|..+ ++.+.+.+.|. + |...|.+.+++++++.++.+++.
T Consensus 427 ~~~~~~~g~~i-~~~~~~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 427 WFLSSSVGSAL-NAQLVTLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHHHHHHHH-HHHHGGGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHHHHHHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 68787776642 1 67789999998888888877766
Q ss_pred hhhhHH
Q 007766 572 HRTKSV 577 (590)
Q Consensus 572 ~r~r~~ 577 (590)
++.|+.
T Consensus 473 ~~~~~~ 478 (491)
T 4aps_A 473 KRIQGL 478 (491)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=174.28 Aligned_cols=329 Identities=13% Similarity=0.023 Sum_probs=216.6
Q ss_pred ccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 007766 32 GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPL 110 (590)
Q Consensus 32 ~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~ 110 (590)
.+.++.+-|.+.+++|+|.++..++.....++.. ..++.|.+.||+|+|.++.++.++..++..+.... .++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 3455566677899999999999998666677664 58999999999999999999999998888765542 246
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHh
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMA 189 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~ 189 (590)
|.+.+..++.|.+.+..+++......+++| ++|+++.|+.....+++..+-..+...+.
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-------------------- 148 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-------------------- 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS--------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------------------
Confidence 667777888888888888888899999996 68999999999998888776665544320
Q ss_pred hheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCC
Q 007766 190 FMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEP 269 (590)
Q Consensus 190 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 269 (590)
+ ..+ +.. .|.+ ..+..+ +...... .+. |
T Consensus 149 -------------~--~~~--~~~---------~~~~------------------~~~~~~-~~~~~~~-----~~~--~ 176 (375)
T 2gfp_A 149 -------------T--MWN--WRA---------CYLF------------------LLVLCA-GVTFSMA-----RWM--P 176 (375)
T ss_dssp -------------C--HHH--HHH---------HHHH------------------HHHHHH-HHHCCCC-----CSS--C
T ss_pred -------------H--hcc--HHH---------HHHH------------------HHHHHH-HHHHHHH-----HHC--c
Confidence 0 000 000 0000 000000 0011000 000 0
Q ss_pred CCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007766 270 PPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGE 349 (590)
Q Consensus 270 ~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 349 (590)
|++ ++ ++++ + ..
T Consensus 177 ----~~~--~~---------------------~~~~----------------------------------~-------~~ 188 (375)
T 2gfp_A 177 ----ETR--PV---------------------DAPR----------------------------------T-------RL 188 (375)
T ss_dssp ----CCS--TT---------------------TCCC----------------------------------C-------CT
T ss_pred ----ccC--CC---------------------Cccc----------------------------------c-------cH
Confidence 000 00 0000 0 00
Q ss_pred CCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCC
Q 007766 350 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 426 (590)
Q Consensus 350 d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~ 426 (590)
..++++.+|++++|.+.+..++.......+......+.++ .|.+... ...++.++...+|++..|+++||.+|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--- 265 (375)
T 2gfp_A 189 LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--- 265 (375)
T ss_dssp TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1234678999999999888776655444444434444443 4544332 366778888999999999999998761
Q ss_pred chhHHHHHHHHHHHHHHH--HHHh---cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHH
Q 007766 427 PRPVAMAVAQVVMAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 501 (590)
Q Consensus 427 ~R~~~l~~~~~l~~~~~l--~~~~---~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~ 501 (590)
... .... ....+.. .... .....+++...+.|+++|..+....+.+.|.+. ++.|+.+|+......+|+.
T Consensus 266 --~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 266 --MWQ-SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp --HHH-HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred --HHH-HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 111 1111 1111211 1111 123346678889999999999999999999997 8999999999999999998
Q ss_pred HhhHhHHHHHHhhhh
Q 007766 502 IFSGVIASGIYDYYA 516 (590)
Q Consensus 502 i~~~~l~g~iyd~~~ 516 (590)
+ ++.+.|.++|..+
T Consensus 341 ~-~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 341 V-LASLSAMLPQTGQ 354 (375)
T ss_dssp C-CSTTCTHHHHHHH
T ss_pred H-HHHHHHHHhcCCc
Confidence 6 6889999987554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-17 Score=173.99 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=122.1
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceee-cchHHHHHHh-cCC---cc--cchhHHHHhhhhhccccccchhhhhhhccC
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQICQSL-GYA---DT--SIYVSMISIWNFLGRVGGGYFSEAIVRKFA 425 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i-~n~~~I~~s~-g~~---~~--~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~ 425 (590)
+++.+|++++|.+++..++... ..... .......++. +.. .. ....++..+.+.+|++..|+++||++||+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSC-TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 4578899999987766433221 11111 1122222322 111 11 124556677889999999999999998652
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHH-HhhhhhHHHHh
Q 007766 426 YPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIF 503 (590)
Q Consensus 426 ~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~-~~a~~~g~~i~ 503 (590)
+.....+++++.+++.... ...+.+...+.+++++........+++|.+..++-|+.+|+. ..+..+|+.+
T Consensus 292 ------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~- 364 (417)
T 2cfq_A 292 ------LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF- 364 (417)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-
T ss_pred ------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-
Confidence 2344444445444443322 334556666678888877777788999999999999999995 7788899876
Q ss_pred hHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 504 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 504 ~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
+|.+.|.++|..+ |+..|.+.+++++++.++.+++.+
T Consensus 365 gp~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 365 MSVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HTHHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7999999998654 888899999999888887765443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-13 Score=145.55 Aligned_cols=148 Identities=7% Similarity=-0.045 Sum_probs=100.7
Q ss_pred hhhhcccchHHHHHHHHHHHHhcCcccccccccHHHHHHhC------CChhhHHHHHHHHHHhhh-ccCccceeeecc-c
Q 007766 7 RLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMG------YNQRQVSLLGVAKDLGDS-IGFVPGTFVEIL-P 78 (590)
Q Consensus 7 ~~~~~~~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~------~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~-g 78 (590)
..++..++-|..++...+...+.... .+...+.+++.+| +|.++..++.....++.. ..+++|++.||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g 83 (524)
T 2xut_A 6 DAPKWPRQIPYIIASEACERFSFYGM--RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG 83 (524)
T ss_dssp -------CCTHHHHHHHHHHHHHHHH--HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555576666655555443222 2233444788899 999999998666666665 478999999999 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhh---hHhhh
Q 007766 79 VWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGI---LKGFA 154 (590)
Q Consensus 79 pr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi---~~a~~ 154 (590)
+|.++.++.++..+++.+..+ . + .++|.+.+..++.|.|.+..+.+......++||+ +||.+.++ .....
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 157 (524)
T 2xut_A 84 KYNTILWLSLIYCVGHAFLAI--F---E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI 157 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--T---S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH--h---c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 999999999998888766443 2 1 1356666677777888888888888889999985 68877766 55555
Q ss_pred hhhHHHHH
Q 007766 155 GLSGAILT 162 (590)
Q Consensus 155 GLSa~i~s 162 (590)
.+++.+-.
T Consensus 158 ~~g~~~g~ 165 (524)
T 2xut_A 158 NFGSFFAS 165 (524)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-13 Score=142.48 Aligned_cols=130 Identities=12% Similarity=-0.020 Sum_probs=89.4
Q ss_pred ccccccc---HHHHHHhCC----Ch----hhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHH
Q 007766 33 YLFGSIS---PVIKAHMGY----NQ----RQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLI 100 (590)
Q Consensus 33 Y~fSvys---~~Lk~~l~~----sq----~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~ 100 (590)
|..++++ +.+++.++. +. ++..++..+..+|..+ ++++|.+.||+|+|.++.++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 455665533 22 2344455556677765 5899999999999999999999988886442211
Q ss_pred HhcCC-----------CCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHH
Q 007766 101 VTNRL-----------PSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILT 162 (590)
Q Consensus 101 ~~g~i-----------~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s 162 (590)
..+.. -+.+++++.+.=++.|.|.+..+..+......+.|. +||...++...+..++..+-.
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhh
Confidence 11100 023577788888888999998888888888999984 689998888777766654443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=113.79 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHH------hcCCccc--chhHHHHhhhhhccccccchhhh-hhhccCCchhH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTS--IYVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPV 430 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s------~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~-l~r~~~~~R~~ 430 (590)
+.+|.+++..++....-..+...+....++ +|.+... ..+++..+.+.++.+.+|+++|| +|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~----- 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA----- 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-----
Confidence 467777777665554433444455555543 6766543 47889999999999999999999 898763
Q ss_pred HHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccc--hhhhhhHHHhhhhhHHHHhhHhH
Q 007766 431 AMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVI 507 (590)
Q Consensus 431 ~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~--~g~nyG~~~~a~~~g~~i~~~~l 507 (590)
+.+..++..++.++.... ....++++-++.|++.|..+...+++++|.|..++ -+..+++...+..+|..+ +|.+
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~ 165 (491)
T 4aps_A 88 -VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLI 165 (491)
T ss_dssp -HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHH
Confidence 355556666666555544 34578889999999999999999999999999988 778888888999999876 7889
Q ss_pred HHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 508 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 508 ~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
+|.+.|..+ |+..|.+.+..+++++++.++...
T Consensus 166 ~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 998887544 899999998888887777665543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-09 Score=109.50 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=126.9
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
.+.++.+++.+++....-.++..-+..+.+++ .+... ...++..+...++.+.+|+++||++||+ .+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHHH
Confidence 34455555554443332222223344444555 55443 4788999999999999999999999866 235555
Q ss_pred HHHHHHHHHHHh----c-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHH
Q 007766 437 VVMAFALLYYAI----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI 511 (590)
Q Consensus 437 ~l~~~~~l~~~~----~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~i 511 (590)
++.+++.++... . ....++++-++.|++.|..+....++++|.|..|+-+...|+...+..+|..+ +|.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 566666555444 3 34578889999999999999999999999999999999999999999999876 68888888
Q ss_pred HhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 512 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 512 yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
.+..+ .++..|.+.+.++++..++.++..
T Consensus 179 ~~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 179 MAWFN-------------------------------DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 76433 177789998888877776665543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-09 Score=108.60 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=118.4
Q ss_pred eecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHH
Q 007766 379 VIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIY 455 (590)
Q Consensus 379 ~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~ 455 (590)
+...+..+.+++|.++.. ...++..+.+.++.+.+|+++||++||+.+ .....+..++.++.... ....++
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 92 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFMLATLVAVTTSSLTVLI 92 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHH
Confidence 334455566677777654 478899999999999999999999998865 34444444444443332 345688
Q ss_pred HHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCcc
Q 007766 456 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF 535 (590)
Q Consensus 456 ~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~ 535 (590)
+...+.|++.|......+++++|.+..|+.++..|+...+..+|..+ +|.+++.+.|..+
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------- 152 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN------------------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH-------------------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc-------------------
Confidence 88899999999999999999999999999999999999999999886 7889998887544
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 536 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 536 ~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
++..|.+.+.++++..++..+
T Consensus 153 -------------~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 153 -------------WRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp -------------HHHHHHHHHHHHHHHHCCCCC
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHH
Confidence 888899888877666554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=107.93 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHH-HHhc------CCccc--chhHHHHhhhhhccccccchhhhh-hhccCCchh
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLG------YADTS--IYVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP 429 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g------~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l-~r~~~~~R~ 429 (590)
+.+|++++..++....-.++...+.... +++| .+... ...++..+...++.+.+|+++||+ +||+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~---- 87 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT---- 87 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH----
Confidence 5677777666655444333444444433 4567 66544 478899999999999999999999 98663
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchh---hhhhHHHhhhhhHHHHhh
Q 007766 430 VAMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFG---ALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g---~nyG~~~~a~~~g~~i~~ 504 (590)
+.+..++..++.++.... ....++++.++.|++.|..+...+++++|.|..++-+ ..+|+...+..+|..+ +
T Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 88 --ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred --HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 244555555555554443 3456888889999999999999999999999988875 3466688888998876 6
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
|.+.|.+.|..+ ++..|.+.+.+++++.++.++
T Consensus 165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 888888876433 899999998887777666544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-08 Score=101.99 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=100.3
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH---Hhc-CchhHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY---AIG-WPGEIYV 456 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~---~~~-~~~~l~~ 456 (590)
+..+.+++|.++.+ ...++..+...++.+.+|.++||+|||+. +.+..++.+++.++. ... ....+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG------IITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH------HHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 44456677887754 47889999999999999999999999763 355555556665544 332 3457888
Q ss_pred HHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 457 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 457 ~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
+-++.|++.|..+...+++++|.+..|+-+...|+...+..+|..+ ++.+++.+.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8999999999999999999999999999999999999999999986 688888887
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=5.7e-07 Score=95.41 Aligned_cols=149 Identities=12% Similarity=0.074 Sum_probs=89.4
Q ss_pred hhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHH
Q 007766 356 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 432 (590)
Q Consensus 356 ~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l 432 (590)
++|+++||.+...+++....-.++..-+....+ ++|.++.+ ..+++..+...++++.+|+++||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------ 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------ 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 689999999888765544433344444555444 46776654 488899999999999999999999997743
Q ss_pred HHHHHHHHH---HHHHHHhcC--chhHHHHHHHHHhhhhccc----hhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHh
Q 007766 433 AVAQVVMAF---ALLYYAIGW--PGEIYVTTVLVGLSYGAHW----AIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 503 (590)
Q Consensus 433 ~~~~~l~~~---~~l~~~~~~--~~~l~~~~~liG~~yG~~~----~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~ 503 (590)
.+...+..+ ..+...... ...+.....+.|+..|..+ .+.+..+.|. .|+.+..+|....+..+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~- 153 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL- 153 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence 111111111 111101000 0112233333344444333 3344444332 356677888888888888765
Q ss_pred hHhHHHHHHh
Q 007766 504 SGVIASGIYD 513 (590)
Q Consensus 504 ~~~l~g~iyd 513 (590)
+|.+.|.+.|
T Consensus 154 ~~~l~~~l~~ 163 (417)
T 2cfq_A 154 GASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6888888876
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.1e-06 Score=87.76 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=83.8
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-------------------cCchhHHHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-------------------GWPGEIYVTT 458 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-------------------~~~~~l~~~~ 458 (590)
.+|.+.+...+|-+++|+++||+|||+.+ .+..+++.++.++.+. .....+.++=
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 56778888899999999999999998743 4555555555444331 1234688899
Q ss_pred HHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHH
Q 007766 459 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI 511 (590)
Q Consensus 459 ~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~i 511 (590)
.+.|++.|+...+.|.+++|....++-|...++...+..+|..+ +..+....
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~ 185 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhh
Confidence 99999999999999999999999999999999999888888765 45344333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 590 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.91 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.88 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.3 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=7.4e-25 Score=228.50 Aligned_cols=418 Identities=13% Similarity=0.143 Sum_probs=259.8
Q ss_pred hhcccchHHHHHHHHHHHHhcC-cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHH
Q 007766 9 KSFVNNRWLVFVCSMWIQSCAG-IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIG 86 (590)
Q Consensus 9 ~~~~~~RW~~l~as~~i~l~~G-t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG 86 (590)
++..+.||.+++...+...... ....+++..|.++ ++|+|.+|++++..+..++.. ..+++|.+.||+|+|.++.+|
T Consensus 17 ~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 17 PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 4445568988877665544433 3356787778776 589999999998777777765 479999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHHHHH
Q 007766 87 VLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILTQIY 165 (590)
Q Consensus 87 ~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s~i~ 165 (590)
.++..++..+..++.... .+++.+.+..++.|.+.+..+.++.....++||+ +||.+.|+...+.++++.+-..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp HHHHHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence 999888876644321111 1234566677788888888888899999999975 599999999999888876665443
Q ss_pred HHhcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHH
Q 007766 166 IMISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVL 245 (590)
Q Consensus 166 ~~~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 245 (590)
... . . ...+.+..+.. .+..
T Consensus 173 ~~~-----------------~---------------~--~~~~w~~~~~~-----~~~~--------------------- 192 (447)
T d1pw4a_ 173 LLG-----------------M---------------A--WFNDWHAALYM-----PAFC--------------------- 192 (447)
T ss_dssp HHH-----------------H---------------H--HTCCSTTCTHH-----HHHH---------------------
T ss_pred hhH-----------------h---------------h--hhhcccccchh-----hhhh---------------------
Confidence 221 0 0 00011111100 0000
Q ss_pred HHHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHH
Q 007766 246 AVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQ 325 (590)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (590)
..+..++++. ..+++++....+ +. ++ .+++.+++ .++..
T Consensus 193 ~~~~~~~~~~---------~~~~~~~~~~~~--~~---~~---------------~~~~~~~~---------~~~~~--- 231 (447)
T d1pw4a_ 193 AILVALFAFA---------MMRDTPQSCGLP--PI---EE---------------YKNDYPDD---------YNEKA--- 231 (447)
T ss_dssp HHHHHHHHHH---------HCCCSSTTTCCC--SC---TT---------------TCCC---------------------
T ss_pred HHHHHHHHHH---------hcccchhhcccc--hh---hh---------------hhhhcccc---------hhhcc---
Confidence 0000000000 001111100000 00 00 00000000 00000
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCcc--cchhHHH
Q 007766 326 AKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT--SIYVSMI 402 (590)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~--~~~Vsl~ 402 (590)
++ +....+...++.++++.+|.+....++.......+........++ .+.+.. ....++.
T Consensus 232 --------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 232 --------------EQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred --------------cc---ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence 00 001112345678999999999888777665544444434333333 344333 2478889
Q ss_pred HhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhccchhhHHHHHHh
Q 007766 403 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASEL 479 (590)
Q Consensus 403 si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~---~~~~l~~~~~liG~~yG~~~~l~P~i~ad~ 479 (590)
.+.+..|++++|+++||++|++.. ........+..++.++.... ......+..+++|++.++...+....+.|.
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 371 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRG---ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 371 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHH---HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhccccccc---cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886532 22222222222222222221 234567777888999999999999999999
Q ss_pred hcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHH
Q 007766 480 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGL 559 (590)
Q Consensus 480 FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~ 559 (590)
+..++.|+-.|+..+...+++.+.+|.+.|.+.|..+ |+..|.+.+++
T Consensus 372 ~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g--------------------------------~~~~~~~~~~~ 419 (447)
T d1pw4a_ 372 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--------------------------------WDGGFMVMIGG 419 (447)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--------------------------------SHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------------hHHHHHHHHHH
Confidence 9999999999998766555544557889999999766 78889999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHh
Q 007766 560 CIIAMVMSLIVVHRTKSVYAQLYG 583 (590)
Q Consensus 560 ~~~a~vls~~l~~r~r~~~~~~~~ 583 (590)
++++.++.+++..++||..+++.+
T Consensus 420 ~~~~~~~~~~~~~~~~~r~~~~~~ 443 (447)
T d1pw4a_ 420 SILAVILLIVVMIGEKRRHEQLLQ 443 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhccccHHHHHH
Confidence 999988888777666665554444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.9e-18 Score=170.29 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=114.6
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAA 476 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ 476 (590)
..++..+....++...|.++||.+|++. +.+..+++.++.+.+... ....+++..++.|+++|..+....+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 337 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRIGGKNA------LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHCHHHH------HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccccc------hhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888999999999999987552 345555555555554443 345778888899999999999999999
Q ss_pred HHhhcccchhhhhhHH-HhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHH
Q 007766 477 SELFGLKSFGALYNFL-TLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 555 (590)
Q Consensus 477 ad~FG~k~~g~nyG~~-~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i 555 (590)
.|.+..++-|+.+|+. .++..+|..+ +|.++|.++|..+ |+.+|.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~G~l~~~~g--------------------------------~~~~~~~ 384 (417)
T d1pv7a_ 338 TSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG--------------------------------FQGAYLV 384 (417)
T ss_dssp HHHSCGGGHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
T ss_pred HHHCCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
Confidence 9999999999999985 5677888876 6889999999876 8889999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHH
Q 007766 556 MAGLCIIAMVMSLIVVHRTKSV 577 (590)
Q Consensus 556 ~~~~~~~a~vls~~l~~r~r~~ 577 (590)
.+++++++.++++++.+++|+.
T Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 385 LGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHHHHHHhhcCCCcc
Confidence 9999999999998888776653
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.5e-09 Score=111.26 Aligned_cols=171 Identities=13% Similarity=0.136 Sum_probs=122.4
Q ss_pred HHHHHHHHhhhcccce---eecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 007766 363 LLLFFSLVLASGSGLT---VIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 437 (590)
Q Consensus 363 wll~~~~~~~~g~Glm---~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~ 437 (590)
|.+++..+++.....+ .++.+.+..++.|.+..+ ...+++.+...+|.+.+|+++||+|||+.+ .+..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~ 97 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHH
Confidence 4444444443332222 233444555567777665 478999999999999999999999997733 44444
Q ss_pred HHHHHHHHHHh-----cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 438 VMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 438 l~~~~~l~~~~-----~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
+..++.++... .....+++.-.+.|++.|..+...+++++|.|..|+-|+..|+...+..+|..+ ++.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~ 176 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHh
Confidence 44444443322 234578888899999999999999999999999999999999999999999876 676777666
Q ss_pred hhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 513 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 513 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
+... -++..|.+.+.++++..++.+.+.
T Consensus 177 ~~~~-------------------------------~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 177 AWFN-------------------------------DWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred hhhh-------------------------------cccccchhhhhhHHHHHHHHHHhc
Confidence 5443 166677887777776666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=4.5e-07 Score=89.64 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=86.2
Q ss_pred HhhhcHHHHHHHHHHHhhhcccceeecchHH-HHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHH
Q 007766 355 QALMKADFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA 431 (590)
Q Consensus 355 ~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~-I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~ 431 (590)
+-+||++||++.+.+++....--++..-+.. +.+..|.++.+ ...++..+...++.+.+|+++||+|||+.+
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l----- 76 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL----- 76 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH-----
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence 3589999999988766543332233333443 33457877665 478899999999999999999999997743
Q ss_pred HHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHHhhhhccchhhHHHHHHhhcc--cchhhhhhHHHhhhhhHHHHhh
Q 007766 432 MAVAQVVMAFALLYYAIGW-----PGEIYVTTVLVGLSYGAHWAIVPAAASELFGL--KSFGALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 432 l~~~~~l~~~~~l~~~~~~-----~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~--k~~g~nyG~~~~a~~~g~~i~~ 504 (590)
.+......++...+.... .....+...+.+...+...........+..-. +.....++........+..+ +
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (417)
T d1pv7a_ 77 -LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-G 154 (417)
T ss_dssp -HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc-c
Confidence 222333333322222111 12234444444444444444433333332222 22233445555555555554 5
Q ss_pred HhHHHHHHhh
Q 007766 505 GVIASGIYDY 514 (590)
Q Consensus 505 ~~l~g~iyd~ 514 (590)
+.+.+.+++.
T Consensus 155 ~~~~~~l~~~ 164 (417)
T d1pv7a_ 155 ASIVGIMFTI 164 (417)
T ss_dssp HHHHHHHHHH
T ss_pred cccccccccc
Confidence 7677777664
|