Citrus Sinensis ID: 007795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
Protein Sequence
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQERGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHcccEEEEEccccccHHHHHHccEEEEcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEccccHEEEEEcccccccccHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccEEEEEEEEEccccccEEccccc
Coil and Loop (DISEMBL)
MGGDVTGTVTASvsapmastaERQYVTAKTSVwwdiencqvpkncdphtiAQNISSALVKmnycgpvsisaygdtnripaSVQHALSSTgialnhvpagvkdasdkkILVDMLFWavdnpapsnyllisgdrdfSNALHQLRMRRYNILlaqphkasaPLVAAAKSVWLWTSLvaggpplasgesllhtndfgtfnpedepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqergngnnfsgnfrnqhllrpnnfpmqpnfpqdnflphnsqnhgfrpippssngprfppappanlpdigklnmseypnyaqncpnfhpqsgeelkssyfespnpaslnvpqkghampggqasnrdslnsrhsrgpegppsssssttfpassnggwgtqgrltpseYVQGLIGVILLALNTlkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSlgalplyvpkneklwncenlygnpnqypkEVWDRIQKFLtsssgrsaiMASQCRYEAALILKnsclpelalGEILKILNMVitpkkwiihhqsgwqpVTITLAEyksdsgseidsgsn
Flexible Loop (DISEMBL)
mggdvtgtvtasvsapmastaerqYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqeRGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPegppsssssttfPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYksdsgseidsgsn
Low Complexity Region (SEG)
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQErgngnnfsgnfrnQHLLRpnnfpmqpnfpqdnfLPHNSQNHGFRpippssngprfppappanlpdigKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNsrhsrgpegppsssssttfpassNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Disordered region (IsUnstruct)
***********************QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL********************************************************************************************************************************************************************************************************************************RLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEY*************
Disordered Region (DISOPRED)
*****************************TSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGP*********************************************************************************************************************************************************************************************************************************************IGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEY*************
Disordered Region (DISEMBL)
**********ASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQERGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQK******************************************WGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYK************
Disordered Region (DISPRO)
*************************VTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL********************************************************************************************************************************************************************************************************************************RLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDS*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQERGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	589	2.2.26 [Sep-21-2011]
Q8BJ34	1730	Meiosis arrest female pro	yes	no	0.247	0.084	0.268	5e-10
Q8VIG2	1735	Meiosis arrest female pro	yes	no	0.247	0.084	0.268	5e-10
E1BZ85	1741	Meiosis arrest female pro	yes	no	0.247	0.083	0.268	6e-10
B2GUN4	1681	Meiosis arrest female pro	yes	no	0.276	0.096	0.259	6e-10
Q9Y4F3	1742	Meiosis arrest female pro	yes	no	0.247	0.083	0.268	7e-10
E1BP74	1742	Meiosis arrest female pro	yes	no	0.247	0.083	0.268	9e-10

>sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1 OS=Mus musculus GN=Marf1 PE=1 SV=3

 Score = 66.6 bits (161), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP      T+ Q I     + +           D ++    V   L++  +
Sbjct: 354 VFWDIENCSVPSGRSATTVVQRIREKFFRGH--REAEFICVCDISKENKEVIQELNNCQV 411

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 412 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 471

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 472 VHKNQASEALLHHANQLIRFEEFISDLPP 500

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.
Mus musculus (taxid: 10090)

>sp|Q8VIG2|MARF1_RAT Meiosis arrest female protein 1 OS=Rattus norvegicus GN=Marf1 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP      T+ Q I     + +           D ++    V   L++  +
Sbjct: 353 VFWDIENCSVPSGRSATTVVQRIREKFFRGHR--EAEFICVCDISKENKEVIQELNNCQV 410

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 471 VHKNQASEALLHHANQLIRFEEFISDLPP 499

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Rattus norvegicus (taxid: 10116)

>sp|E1BZ85|MARF1_CHICK Meiosis arrest female protein 1 homolog OS=Gallus gallus GN=MARF1 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 347 VFWDIENCSVPTGRSAVAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 404

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  + I+L
Sbjct: 405 TVAHINATAKNAADDKLRQSLRRFADTHTAPATVVLVSTDVNFALELSDLRHRHGFRIIL 464

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 465 VHKNQASEALLHHAHELVCFEEFISDLPP 493

Gallus gallus (taxid: 9031)

>sp|B2GUN4|MARF1_XENTR Meiosis arrest female protein 1 homolog OS=Xenopus tropicalis GN=marf1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 15  APMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGD 74
           +P  +T + Q       V+WDIENC VP      T+ + I   L K +           D
Sbjct: 325 SPDLATGQMQENLPPIGVFWDIENCSVPSGRSAVTVVKRIRERLFKGH--REAEFICVCD 382

Query: 75  TNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDF 134
            ++    V   L++  + + H+ A  K+A+D K+   +  +A  + +P+  +L+S D +F
Sbjct: 383 ISKENKEVIEELNNCQVTVAHINATAKNAADDKLRQSLRRFADTHTSPATVVLVSTDVNF 442

Query: 135 SNALHQLRMRR-YNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
           +  L  LR R  ++I+L   ++AS  L+  A  +  +   ++  PP
Sbjct: 443 ALELSDLRHRHSFHIILIHKNQASEALLHHAHELIHFEEFISDLPP 488

Xenopus tropicalis (taxid: 8364)

>sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1 SV=6

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 355 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 412

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 413 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 472

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 473 VHKNQASEALLHHANELIRFEEFISDLPP 501

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Homo sapiens (taxid: 9606)

>sp|E1BP74|MARF1_BOVIN Meiosis arrest female protein 1 OS=Bos taurus GN=MARF1 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 353 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 410

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 471 VHKNQASEALLHHANELIRFEEFISDLPP 499

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	589
359479976	640	PREDICTED: uncharacterized protein LOC10	0.983	0.904	0.614	0.0
297744055	529	unnamed protein product [Vitis vinifera]	0.887	0.988	0.619	0.0
359487696	638	PREDICTED: uncharacterized protein LOC10	0.952	0.879	0.604	0.0
255548285	627	hypothetical protein RCOM_1343910 [Ricin	0.950	0.893	0.557	0.0
255543024	703	nucleic acid binding protein, putative [	0.949	0.795	0.588	0.0
356572894	632	PREDICTED: uncharacterized protein LOC10	0.950	0.886	0.548	1e-173
357511719	638	Limkain-b1 [Medicago truncatula] gi|3555	0.943	0.871	0.533	1e-171
356503990	631	PREDICTED: uncharacterized protein LOC10	0.949	0.885	0.540	1e-169
356533521	617	PREDICTED: uncharacterized protein LOC10	0.933	0.891	0.543	1e-166
297821118	674	hypothetical protein ARALYDRAFT_486728 [	0.943	0.824	0.520	1e-162

>gi|359479976|ref|XP_002273252.2| PREDICTED: uncharacterized protein LOC100253767 [Vitis vinifera]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/641 (61%), Positives = 457/641 (71%), Gaps = 62/641 (9%)

Query: 1   MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVK 60
           MGGD  G   A  + P    AE QYV+ KTSVWWDIENCQVPK CDPH IAQNISSAL K
Sbjct: 1   MGGDGNGGTAARATLP----AEPQYVSVKTSVWWDIENCQVPKGCDPHAIAQNISSALAK 56

Query: 61  MNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 120
           + Y GPVSISAYGDTNRIPASVQ ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP
Sbjct: 57  LYYSGPVSISAYGDTNRIPASVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 116

Query: 121 APSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL 180
           AP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPL+AAAKSVWLWTSLVAGG PL
Sbjct: 117 APANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLVAGGFPL 176

Query: 181 ASGESLLHTNDFGTFNPE------DEPVQVSQPMGNS------------NTGRVSDTKLK 222
            SGES    +    FNPE       E +Q SQP+ ++            + GRV DTK K
Sbjct: 177 TSGESSQLADCNNVFNPEMSQYPVPETMQTSQPVDSNSDGLSAGTQKFFSAGRVGDTKSK 236

Query: 223 GKYTKKPTNQPSISRVASAPVPMQERG--------------------------------- 249
           GK+ +K  NQP+I+R +S  V +QE                                   
Sbjct: 237 GKFIRKIANQPNITRASSVLVGIQESNSFSHQPEYTQGKHESVVSANGSTPNYFQGNPDS 296

Query: 250 ---NGNNFSGNFRNQ--HLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPP 304
              NGNNF GN ++   H LRPNN P Q +F  +N  P NS +HGFRP+PP S GPRFP 
Sbjct: 297 SGINGNNFIGNPQDHYPHPLRPNNIPTQASFASNNLYPPNSYSHGFRPMPPRSEGPRFPS 356

Query: 305 APPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGG 364
           APPAN+PDI +L+MSEYPNYAQN PNFH + G E K    ESP+P  LNVPQKG+     
Sbjct: 357 APPANVPDISRLSMSEYPNYAQNPPNFHQRIGGEYKPYSSESPHPPGLNVPQKGYLPHTS 416

Query: 365 QASNRDSLNSRHSRGPEGPPSSSSST-TFPASSNGGWGTQGRLTPSEYVQGLIGVILLAL 423
           Q   +D+ ++R+  GP+ P  SSS       SSNG WG+QG   PSEYVQGLIGVILL L
Sbjct: 417 QLLYQDTSSNRYPGGPDLPAHSSSPVGANSVSSNGVWGSQGCPQPSEYVQGLIGVILLTL 476

Query: 424 NTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNE 483
           NTLK E+++P+E NI+DCIR+G+PKH+NTDVRKAL  A+EQ MV+K++LGA+ LYV K E
Sbjct: 477 NTLKTEKIMPTEVNISDCIRHGDPKHQNTDVRKALESAVEQQMVVKQNLGAVQLYVGKKE 536

Query: 484 KLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELAL 542
           +LW C N + GNPNQYPK  WDRIQ FL +S GRSAIMASQC+YEAALIL+N CL E AL
Sbjct: 537 RLWKCVNPIGGNPNQYPKATWDRIQMFLATSIGRSAIMASQCKYEAALILRNKCLEEFAL 596

Query: 543 GEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSE 583
           G++L+ILNM+ T KKWI++HQSGWQP+ ITLAE  +D  +E
Sbjct: 597 GDVLQILNMLSTMKKWIVNHQSGWQPIKITLAETNTDINTE 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744055|emb|CBI37025.3| unnamed protein product [Vitis vinifera]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/586 (61%), Positives = 416/586 (70%), Gaps = 63/586 (10%)

Query: 1   MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVK 60
           MGGD  G   A  + P    AE QYV+ KTSVWWDIENCQVPK CDPH IAQNISSAL K
Sbjct: 1   MGGDGNGGTAARATLP----AEPQYVSVKTSVWWDIENCQVPKGCDPHAIAQNISSALAK 56

Query: 61  MNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 120
           + Y GPVSISAYGDTNRIPASVQ ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP
Sbjct: 57  LYYSGPVSISAYGDTNRIPASVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 116

Query: 121 APSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL 180
           AP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPL+AAAKSVWLWTSLVAGG PL
Sbjct: 117 APANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLVAGGFPL 176

Query: 181 ASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVAS 240
            SGES    +    FNPE            S    +    L+G                 
Sbjct: 177 TSGESSQLADCNNVFNPE-----------MSQYPELRSFFLRGG---------------- 209

Query: 241 APVPMQERGNGNNFSGNFRNQ--HLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSN 298
               +  R NGNNF GN ++   H LRPNN P Q +F  +N  P NS +HGFRP+PP S 
Sbjct: 210 ----LCARINGNNFIGNPQDHYPHPLRPNNIPTQASFASNNLYPPNSYSHGFRPMPPRSE 265

Query: 299 GPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKG 358
           GPRFP APPAN+PDI +L+MSEYPNYAQN PNFH + G E K    ESP+P  LNVPQKG
Sbjct: 266 GPRFPSAPPANVPDISRLSMSEYPNYAQNPPNFHQRIGGEYKPYSSESPHPPGLNVPQKG 325

Query: 359 HAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGV 418
           +     Q   +D+ ++R+   P G P                       PSEYVQGLIGV
Sbjct: 326 YLPHTSQLLYQDTSSNRY---PGGCPQ----------------------PSEYVQGLIGV 360

Query: 419 ILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLY 478
           ILL LNTLK E+++P+E NI+DCIR+G+PKH+NTDVRKAL  A+EQ MV+K++LGA+ LY
Sbjct: 361 ILLTLNTLKTEKIMPTEVNISDCIRHGDPKHQNTDVRKALESAVEQQMVVKQNLGAVQLY 420

Query: 479 VPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCL 537
           V K E+LW C N + GNPNQYPK  WDRIQ FL +S GRSAIMASQC+YEAALIL+N CL
Sbjct: 421 VGKKERLWKCVNPIGGNPNQYPKATWDRIQMFLATSIGRSAIMASQCKYEAALILRNKCL 480

Query: 538 PELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSE 583
            E ALG++L+ILNM+ T KKWI++HQSGWQP+ ITLAE  +D  +E
Sbjct: 481 EEFALGDVLQILNMLSTMKKWIVNHQSGWQPIKITLAETNTDINTE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487696|ref|XP_002276596.2| PREDICTED: uncharacterized protein LOC100242533 [Vitis vinifera]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/607 (60%), Positives = 428/607 (70%), Gaps = 46/607 (7%)

Query: 20  TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
            AE QY  AKTSVWWDIENCQVPK C+PH+IAQNISSAL  MNY GPVSISAYGDT+RIP
Sbjct: 30  VAEAQYSGAKTSVWWDIENCQVPKGCEPHSIAQNISSALFTMNYKGPVSISAYGDTHRIP 89

Query: 80  ASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALH 139
             VQ ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNALH
Sbjct: 90  PPVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALH 149

Query: 140 QLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGES-LLHTNDFGTFN-- 196
           QLRMRRYNILLAQP KASAPL+AAAKSVWLWTSL+AGG PL +GES  L  N + + +  
Sbjct: 150 QLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLLAGGLPLTNGESQQLGNNSYSSSDTL 209

Query: 197 --PEDEPVQVSQP---------MGNS---NTGRVSDTKLKGKYTKKPTNQPSISRVASAP 242
             P  +P+Q +Q          +GN    N GR +D K KGK  ++  NQP+I R ASAP
Sbjct: 210 PIPVSDPIQTNQSVDSFSENSYLGNQKLPNMGRTADIKYKGKQNRRNLNQPNIPRTASAP 269

Query: 243 -----------------------VPMQERGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQ 277
                                   P   R NG+N   N++N +   LRP NFP QP F  
Sbjct: 270 QQLSGAYNPNASLNGHAPNFFSGSPDPSRSNGHNLQSNYQNHYSQPLRP-NFPSQPTFGP 328

Query: 278 DNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGE 337
            N  P N        +PP  +GP F   PP N+PD+G LN+SEYP+   N P+F  + GE
Sbjct: 329 SNSFPPNPHTPASHIMPPRPDGPGFTNGPP-NVPDVGVLNISEYPSNVHNPPSFQQRDGE 387

Query: 338 ELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST-TFPASS 396
             ++S  ESPNP SL+  QKGH +    +   D  N+R+SRGPE PPSSSS+  T    S
Sbjct: 388 LKRNSNIESPNPGSLSGQQKGHILHDTPSFYHDPQNNRYSRGPEFPPSSSSAMGTTNVPS 447

Query: 397 NGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRK 456
           NG WG+ G   PSEYVQGLIGVILLALNTLK E+++P+EANI DCIRYG+PKH+NTDV+K
Sbjct: 448 NGIWGSHGCQKPSEYVQGLIGVILLALNTLKNEKILPTEANIADCIRYGDPKHQNTDVKK 507

Query: 457 ALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLY-GNPNQYPKEVWDRIQKFLTSSSG 515
           AL  AIEQ MVIK+ LG + LYV KN++LW C NL  GNP QY K  WD IQ FL S +G
Sbjct: 508 ALESAIEQQMVIKQKLGTVQLYVGKNDRLWKCVNLMGGNPKQYSKATWDGIQNFLISPAG 567

Query: 516 RSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAE 575
           RSAIMASQC+YEAA+ILKN CL + ALG++L+ILNMVI+ KKWI H QSGWQPV I+L E
Sbjct: 568 RSAIMASQCKYEAAIILKNMCLKDRALGDVLQILNMVISAKKWITHLQSGWQPVNISLPE 627

Query: 576 YKSDSGS 582
             +DSG+
Sbjct: 628 SNTDSGA 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548285|ref|XP_002515199.1| hypothetical protein RCOM_1343910 [Ricinus communis] gi|223545679|gb|EEF47183.1| hypothetical protein RCOM_1343910 [Ricinus communis]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/642 (55%), Positives = 421/642 (65%), Gaps = 82/642 (12%)

Query: 1   MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVK 60
           M GDVTG + ++     A+ AE QYV+AKTSVWWDIENCQVPK CDPH IAQNISSALVK
Sbjct: 1   MVGDVTGGIAST--GTAAAAAEAQYVSAKTSVWWDIENCQVPKGCDPHAIAQNISSALVK 58

Query: 61  MNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 120
           +NYCG VSISAYGDTNRIP SVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP
Sbjct: 59  LNYCGAVSISAYGDTNRIPQSVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 118

Query: 121 APSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL 180
           AP+NYLLISGDRDFSN LHQLRMRRYNILLAQP KASAPL+AAAK+VWLWTSL AGG PL
Sbjct: 119 APANYLLISGDRDFSNCLHQLRMRRYNILLAQPQKASAPLIAAAKTVWLWTSLSAGGAPL 178

Query: 181 ASGESLLHTNDFGTFNP------EDEPVQVSQPMGNSNTG--------RVSDTKLKGKYT 226
           ++GES    N   TFN         E +Q S+   N++ G         V +T+ KGKY 
Sbjct: 179 SNGESTQLANVSSTFNAVTSQSRYTETIQFSKATENASLGYSNPFTNVNVGETRFKGKYV 238

Query: 227 KKPTNQPSISRVASAPVPMQER-------------------------------------- 248
           +    QP ISR +SAPV +QE                                       
Sbjct: 239 QNTAKQPGISRASSAPVAVQETSSNEYPYQLDRAQAKQFKKAPHEFFGGNRPVVSASIST 298

Query: 249 ------------GNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIP 294
                        NG+N  G+ + Q+   +RPN F MQ     D FL  +S+        
Sbjct: 299 PNFFPGNSDPAGSNGSNLIGSAQYQYAQPVRPNKFSMQQPVSPDGFLSMHSR-------- 350

Query: 295 PSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNV 354
           P +   +F      N+PDIGKL MSE   Y ++ PN H Q+ E+LK    ES N A LN 
Sbjct: 351 PEAFATKFSSTSFKNVPDIGKLGMSESCTYIEDAPNLHQQTVEQLKMGSVESSNSAFLNP 410

Query: 355 PQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQG 414
           P K   M   Q  NR          P  P  S+++     SSN  WGTQGR  PSE+VQG
Sbjct: 411 PHKSLMMYSSQEDNRYPCAPEFPPPPFSPEVSNTT-----SSNVIWGTQGRPPPSEHVQG 465

Query: 415 LIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGA 474
            IGVILLAL TLK E+++P+EANITDCIR+G+ KHR+ DVRKAL+ AIE +MV+K+SLG 
Sbjct: 466 HIGVILLALYTLKAEKIMPTEANITDCIRFGDKKHRSIDVRKALDSAIEHNMVMKQSLGE 525

Query: 475 LPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILK 533
           +PLYV KNEKLW C N L GNPNQYPK +WD IQ+FLTSS+GRSAI+AS CRYEAALILK
Sbjct: 526 MPLYVGKNEKLWKCVNPLGGNPNQYPKAIWDGIQRFLTSSTGRSAILASHCRYEAALILK 585

Query: 534 NSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAE 575
             CL + ALG+++ ILN+ I  KKWI+HH+SGWQP+ I+L E
Sbjct: 586 QGCLEDHALGDVIHILNLTIYTKKWIVHHRSGWQPIAISLKE 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543024|ref|XP_002512575.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548536|gb|EEF50027.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/615 (58%), Positives = 428/615 (69%), Gaps = 56/615 (9%)

Query: 21  AERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPA 80
           AE QYVTAK SVWWDIENCQVP++CDPH IAQNISSALVKMNYCGPVSISAYGDTNRI +
Sbjct: 88  AEPQYVTAKISVWWDIENCQVPRDCDPHAIAQNISSALVKMNYCGPVSISAYGDTNRINS 147

Query: 81  SVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQ 140
           +VQ ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNALHQ
Sbjct: 148 AVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQ 207

Query: 141 LRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESL-----LHTNDFGTF 195
           LRMRRYNILLAQP +ASAPL+AAA+SVWLWTSLVAGGPP+   ESL      +T+   T 
Sbjct: 208 LRMRRYNILLAQPQRASAPLLAAARSVWLWTSLVAGGPPVREVESLPLGNISYTSTSDTL 267

Query: 196 N-PEDEPVQVSQP---------MGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPM 245
           + P  + V + QP         MGN  T  +  TK KGK  ++  NQ + S+ ++APV  
Sbjct: 268 HIPVTDTVHLKQPSDSYSENPHMGNQRTTYI--TKQKGKTNRRNLNQTNGSKTSNAPVWA 325

Query: 246 QE-RGNGNNF-----------SG------------------NFRNQHL------LRPNNF 269
           QE + N N++           SG                  N R+ H       LRPN  
Sbjct: 326 QEDQPNSNSYQPGPYVPKVTVSGPSPNFNPGSPNFTWSDVTNVRDNHQSHFTQPLRPNAS 385

Query: 270 PMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCP 329
            MQP+F   N  P N Q H    +PP  NG  F   PP N+PDIG L++S YP    N P
Sbjct: 386 AMQPDFAAGNMYPPNFQIHAPL-MPPRPNGTTFTSEPPTNVPDIGNLHISGYPTSFHNPP 444

Query: 330 NFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSS 389
           N   ++GE+   +  ++P   +LN  Q G+      +   +++N+R+  G E PPSSSS+
Sbjct: 445 NAQRRNGEQKHDAKRKAPKSVNLNNSQNGYTTQNNPSGYHETVNNRYPGGSEYPPSSSSA 504

Query: 390 T-TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPK 448
           T T  A  N  WG  G   PSEYVQGLIGVILLALNTLK E+++P+EANI DCIRYG+PK
Sbjct: 505 TATEVAPVNVIWGMPGCPKPSEYVQGLIGVILLALNTLKSEKIMPTEANIADCIRYGDPK 564

Query: 449 HRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQ 507
           HRNTD++KAL  AIEQ MV+K++LGA+ LYV KNEKLW C N + G+  +YPK  WD IQ
Sbjct: 565 HRNTDIKKALESAIEQQMVMKQNLGAVQLYVGKNEKLWRCVNPIGGSLKEYPKATWDEIQ 624

Query: 508 KFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQ 567
           KFL SS+GRSAIM+SQCRYEAA I+K+ CL ELALG IL+ILNMVI  KKWIIHHQSGWQ
Sbjct: 625 KFLASSAGRSAIMSSQCRYEAATIIKSMCLKELALGNILQILNMVIALKKWIIHHQSGWQ 684

Query: 568 PVTITLAEYKSDSGS 582
           P+TITLAE   + GS
Sbjct: 685 PLTITLAEANCNLGS 699

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572894|ref|XP_003554600.1| PREDICTED: uncharacterized protein LOC100794608 [Glycine max]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 342/623 (54%), Positives = 411/623 (65%), Gaps = 63/623 (10%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAK SVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSISAYGDT RI
Sbjct: 8   ANAEAQYATAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNAL 138
           PASVQHALSSTGI+LNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNAL 127

Query: 139 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFN-- 196
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL++GES    N   +    
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSS 187

Query: 197 ------PEDEPVQVSQP--------MGNS---NTGRVSDTKLKGKYTKKPTNQPSISRVA 239
                 P     Q+ Q         +GNS   N GR  D++ +GK   +  +Q +  R  
Sbjct: 188 SDSLQIPVTSAAQIPQQVDSYSEVHVGNSKFPNGGRGFDSRYQGKTNWRNPSQSNGPRAM 247

Query: 240 S-APVPMQERGNGNNFS----GNF-----------------------RNQHL-------- 263
           +  PV +Q+  N NN +    GNF                        N +L        
Sbjct: 248 NPPPVGLQDNRNRNNTNSHRPGNFNPNVPLSGPATNYVHGNTDQLWSNNSNLQGNHQIPY 307

Query: 264 ---LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSE 320
              LRPNNFP+QP F   N    NS       +PP + GP F   P  N+PDIG LN+S 
Sbjct: 308 SQPLRPNNFPLQPPFAPSNSYTPNSHTFPTSMVPPRTGGPNFTSGPHTNVPDIGNLNISG 367

Query: 321 YPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGP 380
           YPN   N P    +SGE  ++S   +P+       + GH +     S     +  +  GP
Sbjct: 368 YPNSVHNPPTVPQRSGELKQNSNNNAPHHLRSIDEKNGHMV---HNSGTKQSHQGYQHGP 424

Query: 381 E-GPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANIT 439
           E  PP  ++      S NG WG+ G   PSEYVQGLIGV+LLALN+LK  +++P+EANIT
Sbjct: 425 EYQPPPLAAMGNNNPSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANIT 484

Query: 440 DCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQY 498
           DCIRYG+PKHRNTDV+KAL  AIEQ+MV+K++LGALPLYV KN+KLW C N L G P Q+
Sbjct: 485 DCIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGTPKQH 544

Query: 499 PKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKW 558
            KE WD I+KFLT+ +GRSA+M +QC+YEA +++K+ C  +LALG++L+ILNM+IT KKW
Sbjct: 545 SKETWDEIEKFLTTPAGRSALMGTQCKYEAGIVIKSMCFKDLALGDVLQILNMLITHKKW 604

Query: 559 IIHHQSGWQPVTITLAEYKSDSG 581
           + HH SGWQP+ ITL E    SG
Sbjct: 605 VTHHPSGWQPLNITLPETNPGSG 627

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511719|ref|XP_003626148.1| Limkain-b1 [Medicago truncatula] gi|355501163|gb|AES82366.1| Limkain-b1 [Medicago truncatula]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 343/643 (53%), Positives = 412/643 (64%), Gaps = 87/643 (13%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAK SVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSISAYGDT RI
Sbjct: 8   TNAEAQYTTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNAL 138
           PASVQHALSSTGI+LNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNAL 127

Query: 139 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPE 198
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWT+L+AGGPPL SG++   +N   +F P 
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGPPLTSGDTQQLSNS--SFLPS 185

Query: 199 DEPVQVSQP----------------MGNSNT---GRVSDTKLKGKYTKKPTNQPSISRVA 239
            E +QV                    GNSN    GR  D++ +G+ T +  +QP+  +  
Sbjct: 186 SETLQVPVSNAAQTQQQGGPYSEIHAGNSNVQNGGRGFDSRYQGRPTWRNPSQPNGPKAM 245

Query: 240 S-APVPMQE-RGNGNNF--------------SGNFRNQHL-------------------- 263
           +  PV +Q+ R N NN+              + NF   +                     
Sbjct: 246 NPPPVGLQDNRNNVNNYRPGNYNPNVSQSGSTANFERANSDPLWSNNGNQQGNHQNQQGN 305

Query: 264 ---------------LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPA 308
                          LRPN FP+QP F   N    NS      P+PP + G  F    P 
Sbjct: 306 HQNQQGNHQNPYSQPLRPNGFPLQPPFAPSNSYSPNSHTFATTPVPPRTVGNNFSTGSPR 365

Query: 309 NLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFES-PNPASLNVPQKGHAMPGGQAS 367
            +PDIG LN+S YPN   N P   PQ   +LK +   S P P      Q GH +      
Sbjct: 366 TVPDIGNLNISGYPNNGHN-PRTVPQRSGDLKPNPKSSAPLPVRSTNEQNGHMV------ 418

Query: 368 NRDSLNSRHSRGPEGPPSSSSS---TTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALN 424
              S    +  GPE  P+ S++      P  SNG WG+ G   PSEYVQGLIGV+LLALN
Sbjct: 419 -HSSTTQGYPHGPEYQPTHSTAMGNNKLP--SNGKWGSSGCPKPSEYVQGLIGVVLLALN 475

Query: 425 TLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEK 484
           +LK  +++P+E NITD IRYG+PKHRNTDV+KAL  A+EQ MV+K++LGAL LYV KN+K
Sbjct: 476 SLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAMEQQMVVKQNLGALTLYVGKNDK 535

Query: 485 LWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALG 543
           LW C N L GNP Q+ KE+WD IQ FLT+ +GRSAIM +QC+YEA +++K+ C  +LALG
Sbjct: 536 LWKCVNPLGGNPKQHSKEIWDEIQNFLTTPAGRSAIMDTQCKYEAGIVIKSMCFKDLALG 595

Query: 544 EILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDS 586
           ++L+ILNMVIT KKWI+H QSGWQP+ +TL E   DSG   D+
Sbjct: 596 DVLQILNMVITHKKWIVHQQSGWQPLILTLPESNPDSGVTSDA 638

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503990|ref|XP_003520782.1| PREDICTED: uncharacterized protein LOC100808926 [Glycine max]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 336/622 (54%), Positives = 408/622 (65%), Gaps = 63/622 (10%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAKTSVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSIS+YGDT RI
Sbjct: 8   TIAEAQYATAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISSYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNAL 138
           PASVQHALSSTGI+LNHVPAGVKDA D+KILVDMLFWA+DNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDARDEKILVDMLFWALDNPAPANYLLISGDRDFSNAL 127

Query: 139 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFN-- 196
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL++GES    N   +    
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSS 187

Query: 197 ------PEDEPVQVSQP--------MGNS---NTGRVSDTKLKGKYTKKPTNQPSISRVA 239
                 P     Q+ Q         +GNS   N GR  D++ +GK   +  +Q +  R  
Sbjct: 188 SDSLQIPVTSATQIQQQVDSYSEVHVGNSKFTNGGRGFDSRYQGKTNWRNLSQSNGPRAM 247

Query: 240 S-APVPMQE-------------------------RGNGN---------NFSGNFR--NQH 262
           +  PV +Q+                          G+GN         N  GN +     
Sbjct: 248 NPLPVVLQDNRNRNNANSSQPGNFNLNVPSSATNHGHGNTDQLWSNNSNLQGNHQIPYSQ 307

Query: 263 LLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYP 322
            LRPNNFP+QP F   N    NS       +PP + GP F   P  N+PDIG L++S YP
Sbjct: 308 PLRPNNFPLQPPFAPSNSYTPNSHTFPTSVVPPRTGGPNFTSGPHTNVPDIGSLSISGYP 367

Query: 323 NYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEG 382
           N   N P    +SGE  ++    +P        + GH +   Q S    L+  +  GPE 
Sbjct: 368 NSVHNPPIVPQRSGELKQNPNSNAPLLLRSIDDKNGHMV---QNSGTQQLHQGYQHGPEY 424

Query: 383 PPS--SSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITD 440
            P   ++     P S NG WG+ G   PSEYVQGLIGV+LLALN+LK  +++P+EANITD
Sbjct: 425 QPMPLAAMGNNNP-SGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITD 483

Query: 441 CIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYP 499
           CIRYG+PKHRNTDV+KAL  AIEQ+MV+K++LGALPLYV KN+KLW C N L G P Q+ 
Sbjct: 484 CIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGTPKQHS 543

Query: 500 KEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWI 559
           KE WD+I KFLT+ +GRSA+M +QC+YEA +++K+ C  +L LG++L+ILNM+IT KKW+
Sbjct: 544 KETWDQIGKFLTTPAGRSALMGTQCKYEAGIVIKSMCFKDLVLGDVLQILNMLITHKKWV 603

Query: 560 IHHQSGWQPVTITLAEYKSDSG 581
            HH SGWQP+ ITL E    SG
Sbjct: 604 THHPSGWQPLNITLPEINPTSG 625

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533521|ref|XP_003535312.1| PREDICTED: uncharacterized protein LOC100794384 [Glycine max]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 328/604 (54%), Positives = 400/604 (66%), Gaps = 54/604 (8%)

Query: 24  QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQ 83
           QY TAKTSVWWDIENC VPK CDPH IAQNISSALV+ NYCGPVSISAYGDT RI A VQ
Sbjct: 15  QYSTAKTSVWWDIENCHVPKGCDPHAIAQNISSALVRTNYCGPVSISAYGDTTRITAVVQ 74

Query: 84  HALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRM 143
           HALSSTGI+LNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNALHQLR+
Sbjct: 75  HALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRL 134

Query: 144 RRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGES-LLHTNDFGTFN-----P 197
           R+YNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL +GES  L  N+  + +     P
Sbjct: 135 RKYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLMNGESQQLGNNNIQSSSDTLPIP 194

Query: 198 EDEPVQVSQPMGN-----------SNTGRVSDTKLKGKYTKK---PTNQPSISRVA---- 239
               VQ+ Q MG+            NTGR  D++  GK   +    TN P     A    
Sbjct: 195 VSNAVQIPQHMGSFSEVHAGNQKFPNTGRQLDSRHHGKTNGRNPSKTNGPKALNPAPENY 254

Query: 240 -----------------SAPVPMQERGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNF 280
                            S   P    GN +   G   N H   LR N+FP+QP F  +N 
Sbjct: 255 SNINSSQTGNYTHNVPPSGSTPNFICGNPDQMRGKNGNLHSQPLRSNSFPLQPPFIPNNS 314

Query: 281 LPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELK 340
              N Q      +PP + GP F  AP  N+P+I    +S YP+ A +       +G+  +
Sbjct: 315 FSPNPQTFATSVVPPRTGGPSFSAAPLLNVPNISNRKISGYPSNAHDPRPVKQWNGDLKQ 374

Query: 341 SSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSS---TTFPASSN 397
           SS   +P+P      Q GH +      N   L + H  GPE  P+S ++      P   N
Sbjct: 375 SSNNNAPSPVKSIGEQTGHMV-----QNTQQLYNGHPHGPEYQPTSLTTMGNNNLPG--N 427

Query: 398 GGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKA 457
           G WG+ G   PSEYVQGLIGV+LLALNTLKIE+++P+EANITDCIR G+PKHRNTDV+KA
Sbjct: 428 GIWGSPGCPKPSEYVQGLIGVVLLALNTLKIEKIMPTEANITDCIRCGDPKHRNTDVKKA 487

Query: 458 LNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGR 516
           L  AIEQ MV+K+++GAL L++ KN+K+W C + + GNP ++ KE W+ I+KFL++ SGR
Sbjct: 488 LENAIEQQMVVKQNVGALQLFIGKNDKVWKCVSPVGGNPKKHSKETWNEIKKFLSTPSGR 547

Query: 517 SAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEY 576
             IM +QC+YEA ++++N CL   ALG++L+ILNM+IT KKWI+H QSGWQP+ ITL E 
Sbjct: 548 LVIMGTQCKYEAGIVIRNMCLKNHALGDVLQILNMLITIKKWIVHQQSGWQPLNITLTEV 607

Query: 577 KSDS 580
            SDS
Sbjct: 608 NSDS 611

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821118|ref|XP_002878442.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata] gi|297324280|gb|EFH54701.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata]

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 338/649 (52%), Positives = 403/649 (62%), Gaps = 93/649 (14%)

Query: 10  TASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSI 69
           TASV+A MA   E QYV AKTSVWWDIENCQVPK  D H IAQNI+SAL KMNYCGPVSI
Sbjct: 13  TASVAAEMA---EAQYVRAKTSVWWDIENCQVPKGLDAHGIAQNITSALQKMNYCGPVSI 69

Query: 70  SAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLIS 129
           SAYGDTNRIP S+QHAL+STGIALNHVPAGVKDASDKKILVDMLFWA+DNPAP+N++LIS
Sbjct: 70  SAYGDTNRIPLSIQHALNSTGIALNHVPAGVKDASDKKILVDMLFWALDNPAPANFMLIS 129

Query: 130 GDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHT 189
           GDRDFSNALH LRMRRYN+LLAQP KAS PLV AAK+VWLWTSL AGG PL   ESL   
Sbjct: 130 GDRDFSNALHGLRMRRYNVLLAQPLKASVPLVHAAKTVWLWTSLSAGGIPLTRAESLQLV 189

Query: 190 NDFGTFNPEDEPVQVSQPM-GNSNTGRVSDTKLKGKYTKKPTN----------------- 231
            +  T     E +  SQP+  N ++ RV D K K KY  K +N                 
Sbjct: 190 ANQTTPTSGSE-IPSSQPLDSNFDSRRVFDNKPKVKYLSKQSNHQPNNNYRQQQNTQGKQ 248

Query: 232 ------------QPSISRVASAPVPMQERGNGNNFSGNF------RNQH--------LLR 265
                       QPS+S   S P P     N N F GN       +NQ+           
Sbjct: 249 FKKAPHEFFGSSQPSVS--TSRPPPNLPSSNVNTFPGNVMTNPQNQNQYNYPPRPGPFPP 306

Query: 266 PNNFPM-QPNFPQDNFLPHNSQNH----------------------------------GF 290
              +P   P++   N +P+++QN+                                  GF
Sbjct: 307 RQPYPNPDPSWNNGNSIPNHAQNYYPNAGRPGASNMRPPYGNVFRPYRPENLNPPIGNGF 366

Query: 291 RPIP-PSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNP 349
           RP+  P ++GPRFP  P    PDI  L++S+YP+  QN PNF+PQ  +E +     S   
Sbjct: 367 RPMQHPRNDGPRFPSPPLLTAPDISNLSVSQYPSQTQNRPNFNPQVRQEFRPKMESS--- 423

Query: 350 ASLNVPQKGHAMPGGQA---SNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRL 406
            S N P KG+      A    +  +    +S  P  PPS     T   SSNG WGTQ   
Sbjct: 424 YSHNGPNKGYIPRTSSAPVTHSTTTTGYTNSSSPGVPPSQPPVVTGSGSSNGMWGTQECP 483

Query: 407 TPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHM 466
            PSEYVQGLIGVIL ALN LK E+V+P+E NI+DCI+YG+PKHR TD++KAL  A+E HM
Sbjct: 484 PPSEYVQGLIGVILHALNILKTEKVMPTEPNISDCIQYGDPKHRGTDIKKALESALEHHM 543

Query: 467 VIKRSLGALPLYVPKNEKLWNCENLYG-NPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR 525
           ++  ++G L LY+ KNE LWNC N  G N  QYPK  WDRIQ+FLTSSSGR A  A+QCR
Sbjct: 544 IVVTNVGKLKLYIGKNEALWNCVNPLGANAKQYPKATWDRIQEFLTSSSGRVAFTATQCR 603

Query: 526 YEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLA 574
           YEAA +LK  CL EL LG+IL+ILN+  T KKWI HHQ+GW+P+TI+LA
Sbjct: 604 YEAAQVLKKECLKELTLGDILQILNITATTKKWITHHQTGWKPITISLA 652

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	589
TAIR|locus:2098058	673	AT3G62200 "AT3G62200" [Arabido	0.371	0.325	0.721	1.8e-146
TAIR|locus:2098073	279	EDA32 "embryo sac development	0.283	0.598	0.796	9.2e-68
TAIR|locus:2100957	257	AT3G60940 "AT3G60940" [Arabido	0.271	0.622	0.508	1.9e-37
TAIR|locus:2178163	924	AT5G09840 [Arabidopsis thalian	0.365	0.232	0.337	6.1e-36
TAIR|locus:2176075	841	AT5G64710 "AT5G64710" [Arabido	0.292	0.204	0.401	3e-35
TAIR|locus:2159491	346	AT5G61180 "AT5G61180" [Arabido	0.134	0.228	0.683	2.3e-27
TAIR|locus:2053567	489	AT2G15560 [Arabidopsis thalian	0.271	0.327	0.408	8.4e-25
TAIR|locus:2081700	472	AT3G62850 [Arabidopsis thalian	0.258	0.322	0.347	1.6e-19
TAIR|locus:2097963	157	AT3G62050 "AT3G62050" [Arabido	0.203	0.764	0.372	5.2e-18
TAIR|locus:2165902	192	AT5G35640 "AT5G35640" [Arabido	0.205	0.630	0.344	3.4e-15

TAIR|locus:2098058 AT3G62200 "AT3G62200" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
 Identities = 161/223 (72%), Positives = 178/223 (79%)

Query:    14 SAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYG 73
             S P A  AE QYV AKTSVWWDIENCQVP   D H IAQNI+SAL KMNYCGPVSISAYG
Sbjct:    15 SVP-AEMAEAQYVRAKTSVWWDIENCQVPNGLDAHGIAQNITSALQKMNYCGPVSISAYG 73

Query:    74 DTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRD 133
             DTNRIP ++QHAL+STGIALNHVPAGVKDASDKKILVDMLFWA+DNPAP+N++LISGDRD
Sbjct:    74 DTNRIPLTIQHALNSTGIALNHVPAGVKDASDKKILVDMLFWALDNPAPANFMLISGDRD 133

Query:   134 FSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFG 193
             FSNALH LRMRRYN+LLAQP KAS PLV AAK+VWLWTSL AGG PL   ESL    +  
Sbjct:   134 FSNALHGLRMRRYNVLLAQPLKASVPLVHAAKTVWLWTSLSAGGIPLTRAESLQLVANQT 193

Query:   194 TFNPEDEPVQVSQPM-GNSNTGRVSDTKLKGKYTKKPTN-QPS 234
             T  P  E +  SQP+  NS++ RV D K K KY  KP+N QP+
Sbjct:   194 TPKPGSE-IPSSQPLDSNSDSRRVFDNKSKVKYVPKPSNHQPN 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098073 EDA32 "embryo sac development arrest 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 133/167 (79%), Positives = 143/167 (85%)

Query:    18 ASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNR 77
             A TAE QYV AKTSVWWDIENCQVPK  D H IAQNISSAL KMNYCG VSISAYGDT+ 
Sbjct:    12 ADTAEAQYVMAKTSVWWDIENCQVPKGLDAHGIAQNISSALKKMNYCGRVSISAYGDTSG 71

Query:    78 IPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNA 137
             IP  +QHAL+STGI L+HVPAGVKDASDKKILVDMLFWA DNPAPSN +LISGDRDFSNA
Sbjct:    72 IPHVIQHALNSTGIELHHVPAGVKDASDKKILVDMLFWAFDNPAPSNIMLISGDRDFSNA 131

Query:   138 LHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGE 184
             LH+L +RRYNILLA P KASAPL  AA +VWLWTSL+AGG PL  G+
Sbjct:   132 LHKLSLRRYNILLAHPPKASAPLSQAATTVWLWTSLLAGGNPLIRGK 178

GO:0005634 "nucleus" evidence=ISM

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2100957 AT3G60940 "AT3G60940" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 86/169 (50%), Positives = 110/169 (65%)

Query:    25 YVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQH 84
             + TAKT VWWD EN  VP+  D + I  NI +AL +  Y GP+SI A+G+   IP  +Q 
Sbjct:    78 FSTAKTQVWWDTENSPVPRGFDAYRIGGNIRNALNENGYRGPISIRAFGNMRLIPTPIQL 137

Query:    85 ALSSTGIALNHVPAG-------VKDASDKKILVDMLFW-AVDNPAPSNYLLISGDRDFSN 136
             AL+STGI L HVP         +KDASD KI+  +L W A+++P PSN ++I+GDRD+S 
Sbjct:   138 ALTSTGIDLYHVPGNKVGSRKTIKDASDFKIIGHVLTWIALNHPQPSNLMVITGDRDYSV 197

Query:   137 ALHQLRMRRYNILLAQPHKA-SAPLVAAAKSVWLWTSLVAGGPPLASGE 184
             ALHQLR R +NILLA P  + S  L+ AA SVW W SL+ G  PLA  E
Sbjct:   198 ALHQLRCRSFNILLACPESSTSTALLRAATSVWKWNSLILGQKPLAENE 246

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2178163 AT5G09840 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 6.1e-36, Sum P(3) = 6.1e-36
 Identities = 75/222 (33%), Positives = 128/222 (57%)

Query:    27 TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHAL 86
             + + SVWWD  +C +P + + + +AQ+I++A+      GP++I+A+GD  ++P S Q AL
Sbjct:    70 SVRVSVWWDFLSCNLPVDTNVYKVAQSITAAIRNSGIKGPITITAFGDVLQLPRSNQDAL 129

Query:    87 SSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRY 146
             S+TGI+L HVP G K+++D+ ++ D++ W   NP P++ LLIS D++F++ LH+LRM  Y
Sbjct:   130 SATGISLTHVPNGGKNSADRSLITDLMCWVSQNPPPAHLLLISSDKEFASVLHRLRMNNY 189

Query:   147 NILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNP--EDEPVQV 204
             NILLA    A   L +AA  +W W +L+ G     +G+      D G +N       + +
Sbjct:   190 NILLASKSSAPGVLCSAASIMWDWDALIKG--ECVTGKHFNQPPD-GPYNSWYGHYRIPL 246

Query:   205 SQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQ 246
               P   + T   S + +K +   +  N  ++  V   P+P +
Sbjct:   247 LDPFAIATTTEQSSSSVKIEELSESVNSNAV--VNLRPIPKE 286

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2176075 AT5G64710 "AT5G64710" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
 Identities = 71/177 (40%), Positives = 108/177 (61%)

Query:    10 TASVSAPMASTAERQYV----TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCG 65
             ++S+SA   S    QY     + +  VWWD ENC +P   +   +AQ I+SA+      G
Sbjct:    38 SSSISAHYTSLKRSQYEEDSRSVRVPVWWDFENCHLPSGANVFKLAQTITSAVRICGIKG 97

Query:    66 PVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNY 125
             P++I+AYGD  ++  + Q AL +TGI L HVP G K+++D+ ++ +++ W   NP P++ 
Sbjct:    98 PITITAYGDMIQLSRTNQEALFATGINLTHVPQGGKNSTDRSLITEIMCWVSQNPPPAHL 157

Query:   126 LLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSV-WLWTSLVAGGPPLA 181
              LIS D DF+N LH+LRMR YNILLA   + +  ++ +A S+ W W +LV G  P A
Sbjct:   158 FLISSDSDFANVLHRLRMRNYNILLACYEETTLGVLCSAASIMWDWDALVRGQNPTA 214

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2159491 AT5G61180 "AT5G61180" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.3e-27, P = 2.3e-27
 Identities = 54/79 (68%), Positives = 67/79 (84%)

Query:    20 TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
             +A+  +  AKTSVWWDIENC+VPK CDPH +AQ+I S L K N+CGP++I AYGDTN+IP
Sbjct:    72 SAKADFAGAKTSVWWDIENCEVPKGCDPHGVAQSIRSVLSKSNFCGPLTIYAYGDTNQIP 131

Query:    80 ASVQHALSSTGIALNHVPA 98
             +SVQ ALSSTG++LNHVPA
Sbjct:   132 SSVQQALSSTGVSLNHVPA 150

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2053567 AT2G15560 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
 Identities = 67/164 (40%), Positives = 90/164 (54%)

Query:    17 MASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSAL-VKMNYCGPV-SISAYGD 74
             M +T          ++ WD+ENC VP +  P  +A NI  A+ +     GPV + SAYGD
Sbjct:    37 MIATQRHSSTDGPMAILWDMENCPVPSDVRPEDVASNIRMAIQLHPVISGPVVNFSAYGD 96

Query:    75 TNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDF 134
              N  P  V+     TG+ L  VP G KDASDK IL+DM  + +DN  P+  +L+SGD DF
Sbjct:    97 FNGFPRRVREGCQRTGVKLIDVPNGRKDASDKAILIDMFLFVLDNKPPATIVLVSGDVDF 156

Query:   135 SNALHQLRMRRYNILLAQPHKA--SAPLVAAAKSVWLWTSLVAG 176
             + ALH L  R Y ++L  P     ++ L  A K VW W S+V G
Sbjct:   157 APALHILGQRGYTVILVIPSSVYVNSALSNAGKFVWDWHSIVHG 200

GO:0005634 "nucleus" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2081700 AT3G62850 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 57/164 (34%), Positives = 87/164 (53%)

Query:    20 TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
             TA+ +Y TA   VWWD+++C +P+  D   +  ++  A  K+ Y GPVSI+  GD N+ P
Sbjct:   230 TAKPEYATAPIVVWWDMKDCPIPEGYDARQVRPSLEGAFKKLGYSGPVSITGCGDHNKTP 289

Query:    80 ASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD--RDFSNA 137
               +   LSSTG+ L H    + +    ++ ++M  W   NP P+  +LIS      F N 
Sbjct:   290 DHILRELSSTGVDLAH---SIDEVIYSRMFINMKQWKARNPPPATIMLISDGVVMMFENL 346

Query:   138 LHQLRMR-RYNILLA---QPHKASAPLVAAAKSVWLWTSLVAGG 177
             +  L    +YN+ LA   +P+K S  L +A    WLW SL+  G
Sbjct:   347 IADLLQETKYNLFLAYSYRPYKMSVLLTSAE---WLWKSLLVAG 387

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2097963 AT3G62050 "AT3G62050" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 5.2e-18, P = 5.2e-18
 Identities = 48/129 (37%), Positives = 75/129 (58%)

Query:    25 YVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQH 84
             +  A+T ++WDIE+C++P + +     +NI SAL    + G VS+ AYGDT  +      
Sbjct:     9 FAAAETGIFWDIEDCKIPDDLNAGDALKNIKSALSSDGHHGTVSVRAYGDTTGLD----- 63

Query:    85 ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD--RDFSNALHQLR 142
                S GI LNH PAG + A   K+L D++ W+ ++P PS   LI GD  RDF + +  L+
Sbjct:    64 -FPSEGIKLNHFPAGERYARQTKMLEDIVSWSAEHPEPSTLFLIVGDTSRDFLDVVQLLK 122

Query:   143 MRR-YNILL 150
              ++ YN ++
Sbjct:   123 SKKNYNFII 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165902 AT5G35640 "AT5G35640" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 42/122 (34%), Positives = 68/122 (55%)

Query:    28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALS 87
             A TSVWWDI  C +P + D   ++  I  AL K+ Y G ++ +A G    +P      + 
Sbjct:    32 AATSVWWDINRCPLPNDVDVRRVSPFIKRALEKLGYTGALTTTAIGILTDVPHDFLTQVY 91

Query:    88 STGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYN 147
             S+GIA++H+P  V +    ++   +++W  DN  PSN +LIS +  FS+ L +L    YN
Sbjct:    92 SSGIAIHHIPL-VSETDIFELSSAVIYWTWDNLPPSNIMLISNELIFSSLLDKLCGFGYN 150

Query:   148 IL 149
             ++
Sbjct:   151 VV 152

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	589
cd10910	145	cd10910, limkain_b1_N_like, N-terminal LabA-like d	2e-68
pfam01936	141	pfam01936, NYN, NYN domain	5e-33
cd06167	151	cd06167, LabA_like, LabA_like proteins	7e-07
pfam14418	69	pfam14418, OHA, OST-HTH Associated domain	4e-05

>gnl|CDD|199896 cd10910, limkain_b1_N_like, N-terminal LabA-like domain of limkain b1 and similar proteins

 Score =  217 bits (556), Expect = 2e-68
 Identities = 83/145 (57%), Positives = 103/145 (71%), Gaps = 1/145 (0%)

Query: 29  KTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSS 88
            T V+WDIENC VP   D   +  NI  AL K+ Y GPV+I+AYGD   +P  V   LSS
Sbjct: 1   PTGVFWDIENCPVPDGVDARRVGPNIKRALRKLGYSGPVTITAYGDLTDVPKDVLEELSS 60

Query: 89  TGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNI 148
           TGI+L HVP+G K+A+DKKILVD+L WA+DNP P+N +LISGD+DF++ L  LR R YN+
Sbjct: 61  TGISLAHVPSGDKNAADKKILVDILLWALDNPPPANIMLISGDKDFADTLSDLRERGYNV 120

Query: 149 LLAQPH-KASAPLVAAAKSVWLWTS 172
           LLAQP  +AS+ L  AA  VWLW S
Sbjct: 121 LLAQPPDQASSALSEAASEVWLWES 145

This eukaryotic subfamily of LabA-like domains contains the N-terminal domain of human limkain b1, a human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif, its - and similar - domain architectures are shared by several members of this family, and a function of these architectures in RNA binding or RNA metabolism has been suggested. The function of the N-terminal domain is unknown. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 145

>gnl|CDD|216797 pfam01936, NYN, NYN domain

 Score =  123 bits (310), Expect = 5e-33
 Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 29  KTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPAS-VQHALS 87
           + +V+ D ENC VP   D   + + I S          V   AYG+           ALS
Sbjct: 1   RVAVFIDGENCPVPAGIDYRKVLEEIKS------GGEVVRARAYGNWGDPKLRKFPDALS 54

Query: 88  STGIALNHVPA---GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMR 144
           STGI + H P      K+A D  + VD L  A DN  P  ++L+SGD DF+  L +LR R
Sbjct: 55  STGIPVQHKPLTKGSGKNAVDVGLAVDALELAYDNN-PDTFVLVSGDGDFAPLLERLRER 113

Query: 145 RY--NILLAQPHKASAPLVAAAKSVW 168
               N+L A+P  + A L+ AA    
Sbjct: 114 GKRVNVLGAEPSTSDA-LINAADRFI 138

These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs. Length = 141

>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 32  VWWDIEN-------CQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPA---- 80
           V+ D EN           K  D   + + + S          V   AY +T R       
Sbjct: 3   VFVDGENLYIGLKRLLGLKRLDLEALLERLLSYA----DGRLVLARAYYNTARPDPSSPD 58

Query: 81  SVQHALSSTGIALNHVPA----GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSN 136
             Q AL   G  +  VP     G +   D  + +D L            +L+SGD DF  
Sbjct: 59  RFQEALRRLGFEVIRVPRLRGKGEEKGVDVALALDALE-LAYERRIDTIVLVSGDSDFVP 117

Query: 137 ALHQLRMR-RYNILLAQPHKASAPLVAAA 164
            L +LR R +  I++     AS+ L  AA
Sbjct: 118 LLERLRERGKRVIVVGFRRSASSALKNAA 146

A well conserved group of domains found in all three kingdoms of life, with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression. Another member is the N-terminal domain of limkain b1, a human autoantigen associated with cytoplasmic vesicles. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls in the LabA_like family. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 151

>gnl|CDD|206585 pfam14418, OHA, OST-HTH Associated domain

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 524 CRYEAALILKN---SCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTIT 572
            RY  A  LK      L  L+LG +  I+ + I+ KK  I+  +   PV  +
Sbjct: 6   GRYGFAETLKKEGPPFLRGLSLGSLCHIVQLAISKKKL-IYENNNLLPVEAS 56

OHA occurs with OST-HTH. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	589
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	99.81
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	99.62
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	99.35
PF14418	75	OHA: OST-HTH Associated domain	99.16
COG1432	181	Uncharacterized conserved protein [Function unknow	97.73
PF04263	123	TPK_catalytic: Thiamin pyrophosphokinase, catalyti	81.11

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=99.81  E-value=2.4e-20  Score=164.33  Aligned_cols=133  Identities=33%  Similarity=0.500  Sum_probs=93.4

Q ss_pred             ceEEEEEecCCCCCCC---CChhhhHHHHHHHHHhcCccCce-EEEEEecCCC-CChhHHHHhhhcCCceeeccC-----
Q 007795           29 KTSVWWDIENCQVPKN---CDPHTIAQNISSALVKMNYCGPV-SISAYGDTNR-IPASVQHALSSTGIALNHVPA-----   98 (589)
Q Consensus        29 kTaVFWDIENCPVP~G---~da~~V~~NIrsAL~klGY~GpV-TIrAYGD~s~-ip~~vr~aLsSSGIsLihVPa-----   98 (589)
                      +|+||||+|||+.+.+   +++..+...|+.       .|++ .+++|+++.. ....+.++|...||.+.++|.     
T Consensus         1 rvavfvD~eN~~~~~~~~~~~~~~l~~~i~~-------~~~~~~~~~y~~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~   73 (146)
T PF01936_consen    1 RVAVFVDGENLYIPLKRWDIDFERLLEEIRK-------YGPLVRIRAYGNWDDPNQKSFQEALQRAGIKVRHFPLRKRGG   73 (146)
T ss_dssp             EEEEEEEHHHHHHHHHSS-B-HHHHHHHHTT-------TEEEEEEEEEE----HHHHHHHHHHHHHT-EEEE------S-
T ss_pred             CEEEEEEhHhCchhhCCCCCCHHHHHHHHHh-------cCCeEEEEEEeeccccchhhHHHHHHhCeeeEEeeecccccc
Confidence            6899999999999765   555555444443       5667 7999999543 235677899999999999986     


Q ss_pred             CCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHHhhcCCeEEEec-cCCCChhHHhhcCeEEE
Q 007795           99 GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVWL  169 (589)
Q Consensus        99 G~KdAADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq-P~nAS~~L~~aAd~vWl  169 (589)
                      +.|+.+|.+|.+||+.|+.+++. +++||||||.||.+++..|+.+|++|.++. +..++..|..+|+.++.
T Consensus        74 ~~k~~~D~~l~~d~~~~~~~~~~-d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~  144 (146)
T PF01936_consen   74 GGKKGVDVALAVDILELAYENPP-DTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFIS  144 (146)
T ss_dssp             --S---HHHHHHHHHHHG--GG--SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred             cccCCcHHHHHHHHHHHhhccCC-CEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence            67899999999999999988766 999999999999999999999999999888 67799999999997764

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>cd06167 LabA_like LabA_like proteins

Probab=99.62  E-value=1.2e-15  Score=136.83  Aligned_cols=135  Identities=23%  Similarity=0.220  Sum_probs=108.2

Q ss_pred             ceEEEEEecCCCCCCCCCh--hhhHHHHHHHHHhcCccCce-EEEEEecCCC--CChhHHHHhhhcCCceeeccC----C
Q 007795           29 KTSVWWDIENCQVPKNCDP--HTIAQNISSALVKMNYCGPV-SISAYGDTNR--IPASVQHALSSTGIALNHVPA----G   99 (589)
Q Consensus        29 kTaVFWDIENCPVP~G~da--~~V~~NIrsAL~klGY~GpV-TIrAYGD~s~--ip~~vr~aLsSSGIsLihVPa----G   99 (589)
                      +++||||.||+..-.....  ..-...+...+..   .+.+ ..++|+++..  ......++|...|+.+++++.    +
T Consensus         2 r~~ifiD~~Nl~~~~~~~~~~~~d~~~l~~~~~~---~~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~   78 (149)
T cd06167           2 RVAVFIDGENLYYSLRDLGGKRFDYRKLLEFLRD---GGEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGS   78 (149)
T ss_pred             eEEEEEeHHHHHHHHHHhcCCCcCHHHHHHHHHh---CCeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCC
Confidence            6899999999975421111  1122223333333   2444 6899999874  557788999999999999984    6


Q ss_pred             CccchhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHHhhcCCeEEEeccC-CCChhHHhhcCeE
Q 007795          100 VKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH-KASAPLVAAAKSV  167 (589)
Q Consensus       100 ~KdAADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAqP~-nAS~~L~~aAd~v  167 (589)
                      .|+.+|.+|.+||+.++.++ .++.|||+|||.||.+++..|+++|++|+++.+. ..|..|..+|+.+
T Consensus        79 ~~~~~D~~l~~d~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f  146 (149)
T cd06167          79 GKKGVDVALAIDALELAYKR-RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAKTSRELRKAADRF  146 (149)
T ss_pred             cccCccHHHHHHHHHHhhhc-CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence            78999999999999999988 8899999999999999999999999999999976 7899999998844

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=99.35  E-value=1.1e-11  Score=118.02  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=107.1

Q ss_pred             hhccCceEEEEEecCCCCCCCCChhhhHHHHHHHHHhcCccCceE-EEEEecCCCCChhHHHHhhhcCCceeeccCCCcc
Q 007795           24 QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVS-ISAYGDTNRIPASVQHALSSTGIALNHVPAGVKD  102 (589)
Q Consensus        24 eya~AkTaVFWDIENCPVP~G~da~~V~~NIrsAL~klGY~GpVT-IrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~Kd  102 (589)
                      +--.-+++||-|.+|.. +..+. .+ ...|...|.+   .|.++ -++||++.. ...+++.|...|++.+.+    |+
T Consensus        19 ~~~~~riAvfID~~Nv~-~~~~~-~d-~~~i~~~ls~---~G~i~~~R~Y~~a~a-~~~l~~~l~~~Gf~pv~~----kG   87 (160)
T TIGR00288        19 RKGEKKIGLLVDGPNML-RKEFN-ID-LDEIREILSE---YGDIKIGKVLLNQYA-SDKLIEAVVNQGFEPIIV----AG   87 (160)
T ss_pred             cCCCCcEEEEEeCCccC-hhhhc-cC-HHHHHHHHHh---cCCeEEEEEEechhc-cHHHHHHHHHCCceEEEe----cC
Confidence            33356899999999996 32221 11 3456666665   56665 589999643 356889999999998764    56


Q ss_pred             chhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHHhhcCCeEEEec-cCCCChhHHhhcCeEEEe
Q 007795          103 ASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVWLW  170 (589)
Q Consensus       103 AADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq-P~nAS~~L~~aAd~vWlW  170 (589)
                      +.|..|.+|+|..++ .+..+.|+|+|||.||.+++.+||++|..|+++. +..++.+|..+|+.++.-
T Consensus        88 ~~Dv~laIDame~~~-~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L  155 (160)
T TIGR00288        88 DVDVRMAVEAMELIY-NPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIIL  155 (160)
T ss_pred             cccHHHHHHHHHHhc-cCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeC
Confidence            899999999999986 5789999999999999999999999999999998 556889999999987654

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>PF14418 OHA: OST-HTH Associated domain

Probab=99.16  E-value=7.7e-12  Score=105.61  Aligned_cols=60  Identities=35%  Similarity=0.434  Sum_probs=54.6

Q ss_pred             hhhhHHHHHHHHhh---hhhhhhhhhHHHHHHHhhccceeeecCCCCceeeEEEEeeecCCCCc
Q 007795          522 SQCRYEAALILKNS---CLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGS  582 (589)
Q Consensus       522 s~~ry~aa~~lk~~---cl~~~~lg~vlqil~~~i~~kkw~~~h~sgwqp~~i~~~~~~~~~~~  582 (589)
                      +.|||++|..||+.   ||+++.||||++|++|.|..|||+ +|+++|+|+.++..++++..+.
T Consensus         9 ~~gRY~~A~~Lk~~gp~~lr~l~Lg~i~~iVqlai~~k~l~-y~~~~l~P~~~~~~~a~s~~~~   71 (75)
T PF14418_consen    9 SGGRYGMAQFLKKRGPPFLRSLSLGDICHIVQLAISKKKLI-YENSNLKPFCISQKVANSFLGI   71 (75)
T ss_pred             CCcHHHHHHHHHhcCchhhcCCcHHHHHHHHHHHHhCCeee-eCCCccccHHHHHHHHHhhhcc
Confidence            38999999999998   999999999999999999999999 9999999998888777765443

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.00015  Score=69.81  Aligned_cols=147  Identities=20%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             cCceEEEEEecCCCCCCCCChhhhHHHHHHHHHhcCccCce-EEEEEe---cCCCCChhHHH--HhhhcCCceeeccC--
Q 007795           27 TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPV-SISAYG---DTNRIPASVQH--ALSSTGIALNHVPA--   98 (589)
Q Consensus        27 ~AkTaVFWDIENCPVP~G~da~~V~~NIrsAL~klGY~GpV-TIrAYG---D~s~ip~~vr~--aLsSSGIsLihVPa--   98 (589)
                      ...+++|-|++|-+.-.. ....+.-.....|++......+ ....|.   +...+..-...  .+.+.|+.+.-.+.  
T Consensus         5 ~~~i~~~id~~n~~~~~~-~~~~~~~d~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~   83 (181)
T COG1432           5 VDRIALFIDGKNLYASQR-KNLGILIDYRKLLRKELKRIYLYEAAPYTAEYGDIEIQEVFLNEYELRSDGFTVVTSNLDG   83 (181)
T ss_pred             ccceeEEeehhhhHHHHH-HhcCcccCHHHHHHHHhcCceEEEEeehhhccccchhhhheecHHHHhhcCcEEEeccccc
Confidence            347899999998654321 1111222234444443333333 233332   23333333333  67777877765543  


Q ss_pred             -----CCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHHhhcCCeEEEecc-CCCChhHHhhcCeEEEecc
Q 007795           99 -----GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQP-HKASAPLVAAAKSVWLWTS  172 (589)
Q Consensus        99 -----G~KdAADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAqP-~nAS~~L~~aAd~vWlWeS  172 (589)
                           -.|..-|..|.+||+..+ +++.-.+++|+|||.||.+++..++.+|..|+++.- ...|..|..+|+.+..-.+
T Consensus        84 ~~~~~~~k~~vDv~la~D~~~l~-~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L~~  162 (181)
T COG1432          84 FTDLRITKGDVDVELAVDAMELA-DKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDLKS  162 (181)
T ss_pred             cCcccccccCcchhhHHHHHHhh-cccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEchh
Confidence                 235567899999999987 577889999999999999999999999999999874 3578899999998877766


Q ss_pred             ccc
Q 007795          173 LVA  175 (589)
Q Consensus       173 LLa  175 (589)
                      +..
T Consensus       163 ~~~  165 (181)
T COG1432         163 LEE  165 (181)
T ss_pred             hhh
Confidence            544

>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2

Probab=81.11  E-value=5.8  Score=36.62  Aligned_cols=76  Identities=24%  Similarity=0.429  Sum_probs=49.7

Q ss_pred             EEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeC--Cc---chHH--HHHHHh
Q 007795           70 SAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR---DFSN--ALHQLR  142 (589)
Q Consensus        70 rAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISG--Dr---DFS~--aL~~LR  142 (589)
                      -+.||...+..++++.+.+.|+.+++.|  .||..|-...++.+   .. ..+..|+++-+  -|   -++.  +|.+++
T Consensus        39 ~iiGDfDSi~~~~~~~~~~~~~~~~~~p--~kD~TD~e~Al~~~---~~-~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~  112 (123)
T PF04263_consen   39 LIIGDFDSISPEVLEFYKSKGVEIIHFP--EKDYTDLEKALEYA---IE-QGPDEIIVLGALGGRFDHTLANLNLLYKYK  112 (123)
T ss_dssp             EEEC-SSSS-HHHHHHHHHCTTEEEEE---STTS-HHHHHHHHH---HH-TTTSEEEEES-SSSSHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCChHHHHHHHhhccceeccc--ccccCHHHHHHHHH---HH-CCCCEEEEEecCCCcHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999  68888877766655   33 33445555442  22   2333  344455


Q ss_pred             hcCCeEEEe
Q 007795          143 MRRYNILLA  151 (589)
Q Consensus       143 ~RGYNILLA  151 (589)
                      +++.+|+|+
T Consensus       113 ~~~~~i~li  121 (123)
T PF04263_consen  113 KRGIKIVLI  121 (123)
T ss_dssp             TTTSEEEEE
T ss_pred             HcCCeEEEE
Confidence            679999886

7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	589
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 25/212 (11%), Positives = 55/212 (25%), Gaps = 68/212 (32%)

Query: 405 RLTPSEYV--QGLIG-----VILLALNTLKIERVVPSEA---NITDCIRYGEPKHRNTDV 454
            L P++ V   G++G     V L    + K++  +  +    N+ +C       +    V
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-------NSPETV 198

Query: 455 RKALN--CAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPK------EVWDR- 505
            + L             RS  +  + +  +        L  +   Y         V +  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAK 257

Query: 506 -IQKF--------LTSSSGRSAIMASQCRYEAALI--------------------LKNSC 536
               F         T     +  +++      +L                      +   
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 537 LPELA----------LGEILKILNMVITPKKW 558
           LP             + E ++  + + T   W
Sbjct: 318 LPREVLTTNPRRLSIIAESIR--DGLATWDNW 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	589
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	99.67

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=99.67  E-value=5.9e-17  Score=148.97  Aligned_cols=143  Identities=20%  Similarity=0.215  Sum_probs=111.8

Q ss_pred             CceEEEEEecCCCCCCCCChhhhHHHHHHHHHhcCccCce-EEEEEecCCC--CChhHHHHhhhcCCceeeccC------
Q 007795           28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPV-SISAYGDTNR--IPASVQHALSSTGIALNHVPA------   98 (589)
Q Consensus        28 AkTaVFWDIENCPVP~G~da~~V~~NIrsAL~klGY~GpV-TIrAYGD~s~--ip~~vr~aLsSSGIsLihVPa------   98 (589)
                      .+++||||.+||..... +......+++..++.+...|.+ ..++||++..  .....+++|...||+++..|.      
T Consensus        10 ~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~   88 (165)
T 2qip_A           10 EKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDG   88 (165)
T ss_dssp             EEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSC
T ss_pred             CcEEEEEEHHHHHHHHH-HHcCCCCCHHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccCC
Confidence            47999999999986421 0000011234444444445766 5799998764  235577899999999988773      


Q ss_pred             CCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHHhhc-CCeEEEeccCC-CChhHHhhcCeEEEecccc
Q 007795           99 GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPHK-ASAPLVAAAKSVWLWTSLV  174 (589)
Q Consensus        99 G~KdAADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~LR~R-GYNILLAqP~n-AS~~L~~aAd~vWlWeSLL  174 (589)
                      ..|++.|..|.+||+.++   +..++++|+|||.||.+++..||++ |+.|+++...+ ++..|..+|+.++.+++++
T Consensus        89 ~~k~~~Dv~laiD~~~~a---~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~  163 (165)
T 2qip_A           89 SAKGDWDVGITLDAIEIA---PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF  163 (165)
T ss_dssp             CCSCCCHHHHHHHHHHHG---GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred             ccCCCccHHHHHHHHHhh---ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence            368899999999999997   6689999999999999999999997 99999988544 7899999999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00