Citrus Sinensis ID: 007832

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSWSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHccccccccccEEEEEEccEEEccccHHHHccccccccEEEEEccccHHHHHHcccccccHHHHccccccccccccccEEEEHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHccccHHHHHHccccc

cHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHcccccccccccHccccHHHHHcccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEHEHHHHHHHHcccHHHccccccHHccccccEEEEEEcccHHHHEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHcccHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcHcccEEEEEcccEEEEEccHHHHcEcccccEcccHHHHHHHHHHHHHHcccccHHHHcccccccHHHHcccEEEcHHHHHHHcHHHHHHHHHHHcccccEEHccccccHEEEEcccccccccccEEEcccccccccHHHHcccEEEEEccccccHHHHccHcccHHHHHHcccccHHHHHccccc

MKTRNLVVGMLCATVLAPILIFtstfkdsypsswswehkSARVLSAttngldqsktdnpirqvtdlTKTQINKHADQEQIKASDNHISAHHSqildtkhqqessltygvlekkeptkinnekqteqttppdfrVRQLKDQLIKAKVYlslpamrnnANFVRELRLRIKEVQRAlgdatkdsdlprIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTaktlpkglhclplrltteyytlnssqrhfpnqekledprlfhyaLFSDNVLAAAVVVNSTVthakhpsnhvFHIVTDRLNYAAMRMWFlanppgratvQVQNIEEFtwlnssyspvlkqlnSQSMIDYYFRAhransdsnlkfrnpkyLSILNHLRFYlpevfprlnkvlfldddvVVQKDLSglwsidlkgkvngavetcgetfhrfdrylnfsnplisknfdpracgwaygmnifdldewrrQNITDVYHTWQkmnhdrqlwklgtlppglitfwkrtypldrfwhvlglgynpsvnqrdIERAAVIHYngnmkpwleinipkyrnywtkhvdydqLYLRECNINP

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSWSWEHKSARVLSATtngldqsktdnpirqvtDLTKTQINKHADQEQIKASDNHISAHHSqildtkhqqeSSLTYgvlekkeptkinnekqteqttppdfrvRQLKDQLIKAkvylslpamrnnANFVRELRLRIKEVQralgdatkdsdlpriANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLtaktlpkglhclPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVthakhpsnhvfHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRansdsnlkfRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSglwsidlkgkvNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

****NLVVGMLCATVLAPILIFTSTFKDSYPSSWSWEHK***********************************************************************************************RQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA******************************IQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSS*********LEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECN***

*KTRNLVVGMLCATVLAPILIFTSTF**********************************************************************************************************RVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKE************************MEQSLAKGKQIQDDCAAVVKKLRAMLHSTE******KKQTLFLTQLTAKTLPKGLHCLPLRLTTEY********************LFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNI**

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSWSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKIN********TPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

MKTRNLVVGMLCATVLAPILIFTST**************************************************************************************KKEPTKIN*EKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSWSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFxxxxxxxxxxxxxxxxxxxxxSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVxxxxxxxxxxxxxxxxxxxxxTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		588	2.2.26 [Sep-21-2011]
Q93ZX7		616	Probable galacturonosyltr	yes	no	0.899	0.858	0.754	0.0
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.775	0.677	0.628	0.0
Q0WQD2		680	Probable galacturonosyltr	no	no	0.777	0.672	0.582	1e-164
Q9ZPZ1		528	Putative galacturonosyltr	no	no	0.724	0.806	0.522	1e-136
Q9LSG3		559	Galacturonosyltransferase	no	no	0.724	0.762	0.502	1e-133
Q8RXE1		610	Probable galacturonosyltr	no	no	0.755	0.727	0.490	1e-133
Q949Q1		537	Probable galacturonosyltr	no	no	0.816	0.893	0.474	1e-129
Q9M9Y5		589	Probable galacturonosyltr	no	no	0.947	0.945	0.408	1e-129
Q9SKT6		536	Probable galacturonosyltr	no	no	0.797	0.875	0.479	1e-124
Q9FWA4		561	Probable galacturonosyltr	no	no	0.687	0.720	0.537	1e-121

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function desciption

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/549 (75%), Positives = 470/549 (85%), Gaps = 20/549 (3%)

Query: 40  SARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKH 99
           SARVLSAT +    S TD  I+QVT                 ASD+HI+  +  +  T+ 
Sbjct: 88  SARVLSATDDDT-HSHTDISIKQVT--------------HDAASDSHINRENMHVQLTQQ 132

Query: 100 QQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANF 159
             E      V E+ EP     +K T     PD +VR LKDQLI+AKVYLSLP+ + NA+F
Sbjct: 133 TSEK-----VDEQPEPNAFGAKKDTGNVLMPDAQVRHLKDQLIRAKVYLSLPSAKANAHF 187

Query: 160 VRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAML 219
           VRELRLRIKEVQRAL DA+KDSDLP+ A ++LKAMEQ+LAKGKQIQDDC+ VVKKLRAML
Sbjct: 188 VRELRLRIKEVQRALADASKDSDLPKTAIEKLKAMEQTLAKGKQIQDDCSTVVKKLRAML 247

Query: 220 HSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPR 279
           HS +EQLRVHKKQT+FLTQLTAKT+PKGLHCLPLRLTT+YY LNSS++ FPNQEKLED +
Sbjct: 248 HSADEQLRVHKKQTMFLTQLTAKTIPKGLHCLPLRLTTDYYALNSSEQQFPNQEKLEDTQ 307

Query: 280 LFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQ 339
           L+HYALFSDNVLA +VVVNST+T+AKHP  HVFHIVTDRLNYAAMRMWFL NPPG+AT+Q
Sbjct: 308 LYHYALFSDNVLATSVVVNSTITNAKHPLKHVFHIVTDRLNYAAMRMWFLDNPPGKATIQ 367

Query: 340 VQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYL 399
           VQN+EEFTWLNSSYSPVLKQL+S+SMIDYYFRAH  NSD+NLKFRNPKYLSILNHLRFYL
Sbjct: 368 VQNVEEFTWLNSSYSPVLKQLSSRSMIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYL 427

Query: 400 PEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLI 459
           PE+FP+L+KVLFLDDD+VVQKDLSGLWS+DLKG VNGAVETCGE+FHRFDRYLNFSNPLI
Sbjct: 428 PEIFPKLSKVLFLDDDIVVQKDLSGLWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLI 487

Query: 460 SKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKR 519
           SKNFDPRACGWAYGMN+FDLDEW+RQNIT+VYH WQ +N DR+LWKLGTLPPGLITFW+R
Sbjct: 488 SKNFDPRACGWAYGMNVFDLDEWKRQNITEVYHRWQDLNQDRELWKLGTLPPGLITFWRR 547

Query: 520 TYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQL 579
           TYPLDR WH+LGLGYNPSVNQRDIERAAVIHYNGN+KPWLEI IP+YR +W+KHVDY+ +
Sbjct: 548 TYPLDRKWHILGLGYNPSVNQRDIERAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHV 607

Query: 580 YLRECNINP 588
           YLRECNINP
Sbjct: 608 YLRECNINP 616

May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZPZ1\|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1	Back alignment and function description

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function description

>sp\|Q8RXE1\|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q9M9Y5\|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1	Back alignment and function description

>sp\|Q9SKT6\|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2	Back alignment and function description

>sp\|Q9FWA4\|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		588
255568510		647	Glycosyltransferase QUASIMODO1, putative	0.925	0.840	0.782	0.0
359496846		1286	PREDICTED: uncharacterized protein LOC10	0.925	0.423	0.761	0.0
296080851		638	unnamed protein product [Vitis vinifera]	0.925	0.852	0.761	0.0
147766034		759	hypothetical protein VITISV_038741 [Viti	0.925	0.716	0.759	0.0
297829924		601	hypothetical protein ARALYDRAFT_478777 [	1.0	0.978	0.7	0.0
356564442		1469	PREDICTED: uncharacterized protein LOC10	0.933	0.373	0.735	0.0
18422837		616	alpha-1,4-galacturonosyltransferase [Ara	0.899	0.858	0.754	0.0
10177914		615	unnamed protein product [Arabidopsis tha	0.899	0.860	0.754	0.0
224124762		665	glycosyltransferase, CAZy family GT8 [Po	0.925	0.818	0.752	0.0
449434420		625	PREDICTED: probable galacturonosyltransf	0.979	0.921	0.706	0.0

>gi\|255568510\|ref\|XP_002525229.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi\|223535526\|gb\|EEF37195.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/552 (78%), Positives = 483/552 (87%), Gaps = 8/552 (1%)

Query: 37  EHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILD 96
           EHKS RVLSAT N   QS+TD  IRQVT+   ++    A+ +  K + +   + ++ +  
Sbjct: 104 EHKSTRVLSAT-NDQHQSQTDTIIRQVTNQQASRTTD-ANNKNSKQNPSDGGSQNAVV-- 159

Query: 97  TKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNN 156
               Q+SSLT   + +K P K   +KQT QT  PD RVRQL+DQLI+AKVYLSLP+ +NN
Sbjct: 160 ----QQSSLTSEKVTEKGPPKSRTDKQTAQTPVPDARVRQLRDQLIRAKVYLSLPSTKNN 215

Query: 157 ANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLR 216
            +F RELRLRIKEVQR LGDATKDSDLP+ AND+LKAM+QSLAKGKQ+QDDCA+VVKKLR
Sbjct: 216 PHFTRELRLRIKEVQRVLGDATKDSDLPKNANDKLKAMDQSLAKGKQVQDDCASVVKKLR 275

Query: 217 AMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLE 276
           AMLHS+EEQLRVHKKQT+FLTQLTAKTLPKGLHC PLRLT EYY+LNSSQ+ FPNQEKLE
Sbjct: 276 AMLHSSEEQLRVHKKQTMFLTQLTAKTLPKGLHCFPLRLTNEYYSLNSSQQQFPNQEKLE 335

Query: 277 DPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRA 336
           DP+L+HYALFSDNVLAAAVVVNST+THAK PS HVFHIVTDRLNYAAMRMWFL NPPG+A
Sbjct: 336 DPQLYHYALFSDNVLAAAVVVNSTITHAKDPSKHVFHIVTDRLNYAAMRMWFLVNPPGQA 395

Query: 337 TVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLR 396
           T+QVQNIEE TWLNSSYSPVLKQL SQSMIDYYFR HRANSDSNLK+RNPKYLSILNHLR
Sbjct: 396 TIQVQNIEELTWLNSSYSPVLKQLGSQSMIDYYFRTHRANSDSNLKYRNPKYLSILNHLR 455

Query: 397 FYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSN 456
           FYLPE+FP LNKVLFLDDD+VVQKDL+GLWS+DLKG VNGAVETCGE FHRFDRYLNFSN
Sbjct: 456 FYLPEIFPMLNKVLFLDDDIVVQKDLTGLWSLDLKGNVNGAVETCGERFHRFDRYLNFSN 515

Query: 457 PLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITF 516
           PLISKNFDP ACGWAYGMN+FDLD+W+RQNIT VYHTWQK+NHDR LWKLGTLPPGLITF
Sbjct: 516 PLISKNFDPHACGWAYGMNVFDLDQWKRQNITGVYHTWQKLNHDRLLWKLGTLPPGLITF 575

Query: 517 WKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDY 576
           WK+TY +DR WHVLGLGYNP+VNQR+IERAAVIHYNGN+KPWLEI I KYRNYW K+VDY
Sbjct: 576 WKQTYSIDRSWHVLGLGYNPNVNQREIERAAVIHYNGNLKPWLEIGISKYRNYWAKYVDY 635

Query: 577 DQLYLRECNINP 588
           D +YLRECNINP
Sbjct: 636 DHVYLRECNINP 647

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359496846\|ref\|XP_002272372.2\| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296080851\|emb\|CBI18781.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147766034\|emb\|CAN70213.1\| hypothetical protein VITISV_038741 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297829924\|ref\|XP_002882844.1\| hypothetical protein ARALYDRAFT_478777 [Arabidopsis lyrata subsp. lyrata] gi\|297328684\|gb\|EFH59103.1\| hypothetical protein ARALYDRAFT_478777 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356564442\|ref\|XP_003550463.1\| PREDICTED: uncharacterized protein LOC100794732 [Glycine max]	Back alignment and taxonomy information

>gi|18422837|ref|NP_568688.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75163841|sp|Q93ZX7.1|GAUT4_ARATH RecName: Full=Probable galacturonosyltransferase 4; AltName: Full=Like glycosyl transferase 3 gi|15810327|gb|AAL07051.1| unknown protein [Arabidopsis thaliana] gi|20259235|gb|AAM14333.1| unknown protein [Arabidopsis thaliana] gi|332008188|gb|AED95571.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|10177914\|dbj\|BAB11325.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224124762\|ref\|XP_002329942.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi\|222871964\|gb\|EEF09095.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449434420\|ref\|XP_004134994.1\| PREDICTED: probable galacturonosyltransferase 4-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		588
TAIR\|locus:2160957		616	GAUT4 "galacturonosyltransfera	0.891	0.850	0.758	6.1e-229
TAIR\|locus:2098836		673	GAUT1 "galacturonosyltransfera	0.960	0.839	0.531	2.7e-171
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.943	0.816	0.501	6e-151
TAIR\|locus:2039934		528	GAUT2 "galacturonosyltransfera	0.510	0.568	0.529	2.6e-132
TAIR\|locus:504955915		610	LGT5 "los glycosyltransferase	0.537	0.518	0.422	3.5e-127
TAIR\|locus:2090210		559	QUA1 "QUASIMODO 1" [Arabidopsi	0.666	0.701	0.556	1.5e-125
TAIR\|locus:2051426		536	GAUT10 "galacturonosyltransfer	0.795	0.873	0.482	5.7e-123
TAIR\|locus:2074572		561	GAUT9 "galacturonosyltransfera	0.697	0.730	0.535	5.7e-123
TAIR\|locus:2027453		537	GAUT11 "galacturonosyltransfer	0.818	0.895	0.475	5.8e-121
TAIR\|locus:2102082		533	GAUT13 "galacturonosyltransfer	0.671	0.741	0.461	3.7e-96

TAIR\|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2209 (782.7 bits), Expect = 6.1e-229, P = 6.1e-229
 Identities = 406/535 (75%), Positives = 464/535 (86%)

Query:    54 SKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKK 113
             S TD+     TD++  Q+   A      ASD+HI+  +  +  T+   E      V E+ 
Sbjct:    93 SATDDDTHSHTDISIKQVTHDA------ASDSHINRENMHVQLTQQTSEK-----VDEQP 141

Query:   114 EPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 173
             EP     +K T     PD +VR LKDQLI+AKVYLSLP+ + NA+FVRELRLRIKEVQRA
Sbjct:   142 EPNAFGAKKDTGNVLMPDAQVRHLKDQLIRAKVYLSLPSAKANAHFVRELRLRIKEVQRA 201

Query:   174 LGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQT 233
             L DA+KDSDLP+ A ++LKAMEQ+LAKGKQIQDDC+ VVKKLRAMLHS +EQLRVHKKQT
Sbjct:   202 LADASKDSDLPKTAIEKLKAMEQTLAKGKQIQDDCSTVVKKLRAMLHSADEQLRVHKKQT 261

Query:   234 LFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAA 293
             +FLTQLTAKT+PKGLHCLPLRLTT+YY LNSS++ FPNQEKLED +L+HYALFSDNVLA 
Sbjct:   262 MFLTQLTAKTIPKGLHCLPLRLTTDYYALNSSEQQFPNQEKLEDTQLYHYALFSDNVLAT 321

Query:   294 AVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSY 353
             +VVVNST+T+AKHP  HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQN+EEFTWLNSSY
Sbjct:   322 SVVVNSTITNAKHPLKHVFHIVTDRLNYAAMRMWFLDNPPGKATIQVQNVEEFTWLNSSY 381

Query:   354 SPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLD 413
             SPVLKQL+S+SMIDYYFRAH  NSD+NLKFRNPKYLSILNHLRFYLPE+FP+L+KVLFLD
Sbjct:   382 SPVLKQLSSRSMIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYLPEIFPKLSKVLFLD 441

Query:   414 DDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYG 473
             DD+VVQKDLSGLWS+DLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDPRACGWAYG
Sbjct:   442 DDIVVQKDLSGLWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYG 501

Query:   474 MNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLG 533
             MN+FDLDEW+RQNIT+VYH WQ +N DR+LWKLGTLPPGLITFW+RTYPLDR WH+LGLG
Sbjct:   502 MNVFDLDEWKRQNITEVYHRWQDLNQDRELWKLGTLPPGLITFWRRTYPLDRKWHILGLG 561

Query:   534 YNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP 588
             YNPSVNQRDIERAAVIHYNGN+KPWLEI IP+YR +W+KHVDY+ +YLRECNINP
Sbjct:   562 YNPSVNQRDIERAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNINP 616

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

TAIR\|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZX7	GAUT4_ARATH	2, ., 4, ., 1, ., -	0.7540	0.8996	0.8587	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		588
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	0.0
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	0.0
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	0.0
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	0.0
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	0.0
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	1e-152
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	1e-136
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	1e-126
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	1e-124
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	1e-119
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	5e-74
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	1e-19
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	1e-16
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	5e-10

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

 Score = 1059 bits (2741), Expect = 0.0
 Identities = 438/552 (79%), Positives = 485/552 (87%), Gaps = 8/552 (1%)

Query: 37  EHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILD 96
               ARVLSAT +    S+TD+ I+QVT             +  +   N  S   SQ   
Sbjct: 96  GEHKARVLSATDDD-THSQTDDIIKQVTQKA-------GQDDSDQQEKNSQSQSASQAES 147

Query: 97  TKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNN 156
            +H Q+S+ T   +++KEP     +KQT+QT  PD RVRQL+DQLIKAKVYLSLPA + N
Sbjct: 148 LEHVQQSAQTSEKVDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKAN 207

Query: 157 ANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLR 216
            +F RELRLRIKEVQR LGDA+KDSDLP+ AN++LKAMEQ+LAKGKQ+QDDC+ VVKKLR
Sbjct: 208 PHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLR 267

Query: 217 AMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLE 276
           AMLHS EEQLRVHKKQT+FLTQLTAKTLPKGLHCLPLRLTTEYY LNSS++ FPNQEKLE
Sbjct: 268 AMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLE 327

Query: 277 DPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRA 336
           DP+L+HYALFSDNVLAAAVVVNSTVT+AKHPS HVFHIVTDRLNYAAMRMWFL NPPG+A
Sbjct: 328 DPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKA 387

Query: 337 TVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLR 396
           T+QVQNIEEFTWLNSSYSPVLKQL SQSMIDYYFRAHRANSDSNLK+RNPKYLSILNHLR
Sbjct: 388 TIQVQNIEEFTWLNSSYSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLR 447

Query: 397 FYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSN 456
           FYLPE+FP+LNKVLFLDDD+VVQKDL+GLWSIDLKG VNGAVETCGE+FHRFDRYLNFSN
Sbjct: 448 FYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSN 507

Query: 457 PLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITF 516
           PLISKNFDP ACGWAYGMN+FDLDEW+RQNIT+VYH+WQK+NHDRQLWKLGTLPPGLITF
Sbjct: 508 PLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITF 567

Query: 517 WKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDY 576
           WKRTYPLDR WHVLGLGYNP+VNQRDIERAAVIHYNGNMKPWLEI IPKYRNYW+K+VDY
Sbjct: 568 WKRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDY 627

Query: 577 DQLYLRECNINP 588
           DQ+YLRECNINP
Sbjct: 628 DQVYLRECNINP 639

Length = 639

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		588
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	99.97
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	99.97
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.91
PLN00176		333	galactinol synthase	99.9
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.71
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	98.96
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	97.7
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	95.41
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	94.72
PLN03181		453	glycosyltransferase; Provisional	88.64

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=7.2e-162  Score=1314.17  Aligned_cols=579  Identities=79%  Similarity=1.245  Sum_probs=556.9

Q ss_pred             CcchhHHHHHHHHHHhhceeeeecccccc---------------------------------------------------
Q 007832            1 MKTRNLVVGMLCATVLAPILIFTSTFKDS---------------------------------------------------   29 (588)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------   29 (588)
                      |+.|++||+|||+||+|||+|||+||+.+                                                   
T Consensus         3 ~~~r~~~~~~l~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~p~~~~~~~~~~~~   82 (639)
T PLN02829          3 MRLRNLVLGLLLLTVLSPILLYTDRLSASFTPSSKRDFLEDVTALTLGGDASKLNVLPQESSSSLKEPIGIVYSDNSSKT   82 (639)
T ss_pred             HHHHHHHHHHHHHHHhhceeEEecccccccCCcchhhhhHHHHhhccCccchhcccccccccccccCceeEEeecccccc
Confidence            57899999999999999999999999862                                                   


Q ss_pred             -------CCCCcchhhhhcccccccccCCCcCCCCccchhhhccchhccccchhhhhhhhcccccccccccccccccccc
Q 007832           30 -------YPSSWSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQE  102 (588)
Q Consensus        30 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (588)
                             ||+.+++||+ +||||+|+|+ ++|++|++|+|||+.++|..  +.     ...+++.+.+.++..++++.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~  153 (639)
T PLN02829         83 IEPDSQDLLLDKRGEHK-ARVLSATDDD-THSQTDDIIKQVTQKAGQDD--SD-----QQEKNSQSQSASQAESLEHVQQ  153 (639)
T ss_pred             ccccccccccccccchh-hhhccccccc-cccccchhHHHhhhcccccc--cc-----cccccccccccccccchhhhhh
Confidence                   2247788999 9999999777 99999999999999888733  22     2256788889999999999999


Q ss_pred             ccccccccccCCccccccccccCCCCCchhHHHhhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHhhcccCCCCC
Q 007832          103 SSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSD  182 (588)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~  182 (588)
                      +++++++.++++|...+|+|+|++++|+|++||+|||||||||||++|||++||++|+||||++|||+||+||+|+.|+|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~  233 (639)
T PLN02829        154 SAQTSEKVDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSD  233 (639)
T ss_pred             hhccccccccccccccccccccccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccchhhhcC
Q 007832          183 LPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTL  262 (588)
Q Consensus       183 ~~~~~~~~~~~m~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~la~~~~Pk~lhcL~~rlt~ey~~~  262 (588)
                      ||+++.++|++|+++|++||+++|||+++++|||||++++|||+++||+|++|++||||+|+|||||||+||||+|||.+
T Consensus       234 lp~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~  313 (639)
T PLN02829        234 LPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNL  313 (639)
T ss_pred             CChhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCCCCceEEEEEcCcchhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEee
Q 007832          263 NSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQN  342 (588)
Q Consensus       263 ~~~~~~~~~~~~l~D~~~iHIa~~sDnvlaasVvI~Sil~Ns~~p~~ivFHIvtd~i~~~~mk~wf~~n~~~~atI~v~n  342 (588)
                      ++.++++|++++++||+++|||+|||||+|++|||||++.|+++|+++|||||||++||.+|++||+.||+++|+|+|+|
T Consensus       314 ~~~~~~~p~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~n  393 (639)
T PLN02829        314 NSSEQQFPNQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQN  393 (639)
T ss_pred             ChhhccCCChhhccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhcccchhhhhhhccccceeEEecccccCCCCCcccCCCCCcchhhhHHhhhhccccCCCeEEEEecCeeeccCc
Q 007832          343 IEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDL  422 (588)
Q Consensus       343 ie~f~~L~~~y~p~l~~l~s~~~~~y~F~~~~~~~~~~lk~r~~~yiS~~~y~Rf~IPeIlP~ldKVLYLD~DvIV~~DL  422 (588)
                      +++|+|++.+|+|+++|++++++++|||+.+..++..++++|+|+|+|+++|+|||||++||+++||||||+||||++||
T Consensus       394 ie~f~wln~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDL  473 (639)
T PLN02829        394 IEEFTWLNSSYSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDL  473 (639)
T ss_pred             hhhcccccccccHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCCh
Confidence            99999999999999999999999999998877666778999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCeeEeeecccccccccccccccCCcccccCCCCCCCccccceeeeechHHHHhhHHHHHHHHHHHcCCcc
Q 007832          423 SGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQ  502 (588)
Q Consensus       423 seLw~iDL~g~viaAVeDc~~~~~r~~~yLn~s~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~~~n~~~~  502 (588)
                      ++||++||+|+++|||+||...|++|+.+++|++|.+..+|+++.||||+|||||||++||+++++++++.|++.+.++.
T Consensus       474 seLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~  553 (639)
T PLN02829        474 TGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQ  553 (639)
T ss_pred             HHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCc
Confidence            99999999999999999999888899999999999988899999999999999999999999999999999999888888


Q ss_pred             CCCCCCCchhhhhhccCeeeccCccccccCCCCCCCCcccCCCcEEEEccCCCCCcccCCccchHHHHHHhhccCcchhh
Q 007832          503 LWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLR  582 (588)
Q Consensus       503 l~dqg~Ln~~ll~F~g~i~~Ld~~WN~~~lgy~~~i~~~~ie~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~~~fl~  582 (588)
                      +|++|+||+++++|+|++++||.+||++|+||++.+.++.+++|+||||+|++|||.+.++++|+++|.+|++++++||+
T Consensus       554 L~dlgaLPp~Ll~F~g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~  633 (639)
T PLN02829        554 LWKLGTLPPGLITFWKRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLR  633 (639)
T ss_pred             cccccCCChHHHHhcCceEecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHH
Confidence            99999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             hccCCC
Q 007832          583 ECNINP  588 (588)
Q Consensus       583 ~cni~~  588 (588)
                      +|||||
T Consensus       634 ~Cni~p  639 (639)
T PLN02829        634 ECNINP  639 (639)
T ss_pred             hCCCCC
Confidence            999998

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PLN03181 glycosyltransferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		588
1ss9_A		311	Crystal Structural Analysis Of Active Site Mutant Q		5e-04

>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311

Back alignment and structure

Iteration: 1

Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 30/191 (15%) Query: 385 NPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGET 444 N +++SI + R L E +KVL+LD DV+V+ L+ LW DL GA C + Sbjct: 75 NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDL 131 Query: 445 FHRFDRYLNFSNPLISKNFDPRACGWAY---GMNIFDLDEWRRQNITDVYHTWQKMNHDR 501 F +R + + A G Y G+ + +L +WRR +I + W + D Sbjct: 132 F--VERQEGYKQKI------GMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183 Query: 502 QLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQ----------RD----IERAA 547 ++ + GL Y RF + + Y N+ RD + A Sbjct: 184 MQYQDEDILNGLFKG-GVCYANSRF-NFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVA 241 Query: 548 VIHYNGNMKPW 558 V HY G KPW Sbjct: 242 VSHYCGPAKPW 252

PyMOL of 1ss9

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		588
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	8e-59
3tzt_A		276	Glycosyl transferase family 8; structural genomics	9e-25
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	1e-04

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  198 bits (504), Expect = 8e-59
 Identities = 51/308 (16%), Positives = 96/308 (31%), Gaps = 60/308 (19%)

Query: 282 HYALFSDN--VLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQ 339
                +D+       V   S        +   FH++   ++ A           G   ++
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAHP-DTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 340 VQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYL 399
             ++    +                                    N +++SI  + R  L
Sbjct: 61  FIDVNPEDFAGFPL-------------------------------NIRHISITTYARLKL 89

Query: 400 PEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAV-ETCGETFHRFDRYLNFSNPL 458
            E     +KVL+LD DV+V+  L+ LW  DL     GA  +   E    + + +  ++  
Sbjct: 90  GEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG- 148

Query: 459 ISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWK 518
                      +  G+ + +L +WRR +I  +   W +   D   ++   +  GL  F  
Sbjct: 149 --------EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKG 198

Query: 519 RTYPLDRFWHVLGLGYNPSVN--------------QRDIERAAVIHYNGNMKPWLEINIP 564
                +  ++ +   Y    N                 +   AV HY G  KPW      
Sbjct: 199 GVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTA 258

Query: 565 KYRNYWTK 572
                +T+
Sbjct: 259 WGAERFTE 266

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		588
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.92
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.88

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=7.9e-45  Score=370.64  Aligned_cols=258  Identities=18%  Similarity=0.209  Sum_probs=183.4

Q ss_pred             CceEEEEEcCc--chhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEeecchhhhhcccchhh
Q 007832          279 RLFHYALFSDN--VLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPV  356 (588)
Q Consensus       279 ~~iHIa~~sDn--vlaasVvI~Sil~Ns~~p~~ivFHIvtd~i~~~~mk~wf~~n~~~~atI~v~nie~f~~L~~~y~p~  356 (588)
                      -.+|||+++|.  +.+++|+|+|++.|+++ ++++|||++++++.+..+.+...-...+.+|++..+.+ ++        
T Consensus         4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~--------   73 (276)
T 3tzt_A            4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DL--------   73 (276)
T ss_dssp             -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred             eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HH--------
Confidence            35999999996  46899999999999986 58999999999987654333221112345666665432 00        


Q ss_pred             hhhhccccceeEEecccccCCCCCcccCCCCCcchhhhHHhhhhccccC-CCeEEEEecCeeeccCchhhhccCCCCCee
Q 007832          357 LKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR-LNKVLFLDDDVVVQKDLSGLWSIDLKGKVN  435 (588)
Q Consensus       357 l~~l~s~~~~~y~F~~~~~~~~~~lk~r~~~yiS~~~y~Rf~IPeIlP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~vi  435 (588)
                                   |..          +...+++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+++
T Consensus        74 -------------~~~----------~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~  130 (276)
T 3tzt_A           74 -------------FSF----------AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYIL  130 (276)
T ss_dssp             ---------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSE
T ss_pred             -------------Hhc----------CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeE
Confidence                         100          01134678999999999999994 999999999999999999999999999999


Q ss_pred             Eeeeccccc-ccccccccccCCcccccCCCCCCCccccceeeeechHHHHhhHHHHHHHHHHHcCCccCCCCCCCchhhh
Q 007832          436 GAVETCGET-FHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLI  514 (588)
Q Consensus       436 aAVeDc~~~-~~r~~~yLn~s~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~~~n~~~~l~dqg~Ln~~ll  514 (588)
                      |||+||+.. +.+...         ..+++...||||||||||||++||+.++++++++|++.+.....  .++|+++|.
T Consensus       131 aav~d~~~~~~~~~~~---------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~  199 (276)
T 3tzt_A          131 AAASHTGKTDMANNVN---------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDILNA  199 (276)
T ss_dssp             EEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHH
T ss_pred             EEEEecccchHHHHHH---------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhHHHH
Confidence            999999753 111111         11343446999999999999999999999999999987754322  345555668


Q ss_pred             hhccCeeeccC-ccccccCCCCCC-----CCc----ccCCCcEEEEccCCCCCcccCCccchHHHHHHhhccCcchh
Q 007832          515 TFWKRTYPLDR-FWHVLGLGYNPS-----VNQ----RDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYL  581 (588)
Q Consensus       515 ~F~g~i~~Ld~-~WN~~~lgy~~~-----i~~----~~ie~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~~~fl  581 (588)
                      +|.|++++||. +||+++ |+...     .+.    ...++|+||||+|+.|||...+.++|+++||+|.++..++|
T Consensus       200 ~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          200 MYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             HHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             HHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence            99999999998 999996 33210     011    12457999999999999999999999999999999887775

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		588
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	4e-28
d1ll2a_		263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	9e-10

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  111 bits (279), Expect = 4e-28
 Identities = 55/302 (18%), Positives = 98/302 (32%), Gaps = 57/302 (18%)

Query: 286 FSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEE 345
             DN  A   V   +V  A   +   FH++   ++ A           G   ++  ++  
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP 66

Query: 346 FTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR 405
             +                                    N +++SI  + R  L E    
Sbjct: 67  EDFAG-------------------------------FPLNIRHISITTYARLKLGEYIAD 95

Query: 406 LNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAV-ETCGETFHRFDRYLNFSNPLISKNFD 464
            +KVL+LD DV+V+  L+ LW  DL     GA  +   E    + + +  ++     N  
Sbjct: 96  CDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFN-- 153

Query: 465 PRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLD 524
                   G+ + +L +WRR +I  +   W +   D   ++   +  GL  F       +
Sbjct: 154 -------AGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGVCYAN 204

Query: 525 RFWHVLGLGYNPSVN--------------QRDIERAAVIHYNGNMKPWLEINIPKYRNYW 570
             ++ +   Y    N                 +   AV HY G  KPW           +
Sbjct: 205 SRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERF 264

Query: 571 TK 572
           T+
Sbjct: 265 TE 266

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		588
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.92

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=3.6e-41  Score=338.37  Aligned_cols=253  Identities=19%  Similarity=0.240  Sum_probs=192.6

Q ss_pred             eEEEEEcCc-c-hhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEeecchhhhhcccchhhhh
Q 007832          281 FHYALFSDN-V-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLK  358 (588)
Q Consensus       281 iHIa~~sDn-v-laasVvI~Sil~Ns~~p~~ivFHIvtd~i~~~~mk~wf~~n~~~~atI~v~nie~f~~L~~~y~p~l~  358 (588)
                      +|||+++|. + .+++|+|+|++.|+++ .+++|||++++++.+........-...+..+.+..+..-.           
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~-----------   68 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPED-----------   68 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGG-----------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchH-----------
Confidence            699999995 4 5799999999998875 4899999999999876554433222234455555443210           


Q ss_pred             hhccccceeEEecccccCCCCCcccCCCCCcchhhhHHhhhhccccCCCeEEEEecCeeeccCchhhhccCCCCCeeEee
Q 007832          359 QLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAV  438 (588)
Q Consensus       359 ~l~s~~~~~y~F~~~~~~~~~~lk~r~~~yiS~~~y~Rf~IPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~g~viaAV  438 (588)
                                 |     .   ... ...+++|.++|+||++|++||+++||||||+|+||.+||++||++|++++.+|||
T Consensus        69 -----------~-----~---~~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~  128 (282)
T d1ga8a_          69 -----------F-----A---GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAS  128 (282)
T ss_dssp             -----------G-----T---TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEE
T ss_pred             -----------h-----c---ccc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeee
Confidence                       0     0   001 1235788999999999999999999999999999999999999999999999999


Q ss_pred             ecccccc-cccccccccCCcccccCCCCCCCccccceeeeechHHHHhhHHHHHHHHHHHcCCcc-CCCCCCCchhhhhh
Q 007832          439 ETCGETF-HRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQ-LWKLGTLPPGLITF  516 (588)
Q Consensus       439 eDc~~~~-~r~~~yLn~s~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~~~n~~~~-l~dqg~Ln~~ll~F  516 (588)
                      .|+.... ..+...+         ++.+..+||||||||||+++||+.++++++.++++.+.... .+|||.   +|.+|
T Consensus       129 ~d~~~~~~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~---LN~~f  196 (282)
T d1ga8a_         129 IDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDI---LNGLF  196 (282)
T ss_dssp             ECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHH---HHHHH
T ss_pred             hhhhhhhhhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcccCchhH---HHHHh
Confidence            9975321 1111112         44456899999999999999999999999999998765443 345655   45789


Q ss_pred             ccCeeeccCccccccCCCCC--CC------C------cccCCCcEEEEccCCCCCcccCCccchHHHHHHhhccC
Q 007832          517 WKRTYPLDRFWHVLGLGYNP--SV------N------QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYD  577 (588)
Q Consensus       517 ~g~i~~Ld~~WN~~~lgy~~--~i------~------~~~ie~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~  577 (588)
                      .|++..||.+||++..+|..  ..      .      .....+++||||+|+.|||...+.+.+.+.|++|.+..
T Consensus       197 ~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~  271 (282)
T d1ga8a_         197 KGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSL  271 (282)
T ss_dssp             TTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTC
T ss_pred             cCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhh
Confidence            99999999999998643221  00      0      13346799999999999999999889999999998653

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure