Citrus Sinensis ID: 007833

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
Protein Sequence
MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQNAVQAGLFDNFSGSTSTDSPTAKAGSSSKSSGTAANGGSSNKRKKKGKKQW
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEEEcccccEEEEEEEEcccccccccEEEccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccEcccccccEEEEEccccHHHHHHHHHHccccccccccEEEEcccccEEEEEHEccccccEEEEEccEEEEEHHHHHHccccccccccccEEEEEEcccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHcccccc
Coil and Loop (DISEMBL)
MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKvnqhktdsspeqtsgmqagpsfsngepvhpafsdnvpglsadrspgvpstsgddsemtseDEVVRLLNCTDhysalglsrfenvDVSILKREYRKKAmlvhpdknmgnEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSasqkngrhgffgsgyarseadcddpfgesrriackKCNNFHVWIETKKSKASARWCQECndyhqakdgdgwveqsseplffgifqkvdvpcayvcansriynatdwyicqgmrcpanthkpsfhvntsvtskhntskgtssgqrggrmpppnleetmtEDEFLEWLQNAVQaglfdnfsgststdsptakagssskssgtaanggssnkrkkkgkkqw
Flexible Loop (DISEMBL)
MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVpstsgddsemtsEDEVVRLLNCTDHysalglsrfenvdVSILKREYRKKAmlvhpdknmgnEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRfqsasqkngrhgffGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHvntsvtskhntskgtssgqrggrmppPNLEETMTEDEFLEWLQNAVQAGLFDNFSGSTSTDsptakagssskssgtaanggssnkrkkkgkkqw
Low Complexity Region (SEG)
MMEkvklsvnvvvrslrvyvvPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKflmvlvvaalvaffigfalalvvvalSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWlglllalnlSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQNAVQAGLFDNFSGSTSTDSPtakagssskssgtaanggssnkrkkkgkkQW
Disordered region (IsUnstruct)
*****KLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKS***************************************************************VVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHP******EKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQ********HGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPAN********************************************FLEWLQNAVQAGLFD******************************************
Disordered Region (DISOPRED)
********VNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFL********************************************************************LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD******************************************************NFHVWIETKKSKASARWCQECNDYHQ*KD**********PLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN**************************LEETMTEDEFLEWLQNAVQAGLFDNFSGS******************************K******
Disordered Region (DISEMBL)
MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKV*****************GPSFSNGEPVHPAFSDNVPGLS********************DEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIET********WCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNT********************MPPPNLEETMTEDEFLEWLQNAVQAGLFDNFSG**************************************
Disordered Region (DISPRO)
MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQ***************************************MTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDY***FQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSV*******************PPPNLEETMTEDEFLEWLQNAVQAGLFD******************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQNAVQAGLFDNFSGSTSTDSPTAKAGSSSKSSGTAANGGSSNKRKKKGKKQW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	588	2.2.26 [Sep-21-2011]
Q5XIX0	703	DnaJ homolog subfamily C	yes	no	0.369	0.308	0.286	1e-17
Q921R4	703	DnaJ homolog subfamily C	yes	no	0.365	0.305	0.280	1e-17
Q6Y2X3	702	DnaJ homolog subfamily C	yes	no	0.365	0.306	0.288	5e-17
Q95J56	699	DnaJ homolog subfamily C	yes	no	0.350	0.294	0.275	1e-16
Q0AIY0	369	Chaperone protein DnaJ OS	yes	no	0.107	0.170	0.553	2e-11
O06431	369	Chaperone protein DnaJ OS	yes	no	0.108	0.173	0.5	1e-10
Q5FGQ8	382	Chaperone protein DnaJ OS	yes	no	0.153	0.235	0.424	4e-10
B1ZUS0	382	Chaperone protein DnaJ OS	yes	no	0.107	0.164	0.523	4e-10
Q5HCG4	382	Chaperone protein DnaJ OS	yes	no	0.153	0.235	0.424	4e-10
Q2GLU9	382	Chaperone protein DnaJ OS	yes	no	0.113	0.175	0.478	7e-10

>sp|Q5XIX0|DJC14_RAT DnaJ homolog subfamily C member 14 OS=Rattus norvegicus GN=Dnajc14 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 115/258 (44%), Gaps = 41/258 (15%)

Query: 278 EDEVVRLLNCT----DHYSALGLSRFENVDVSI-LKREYRKKAMLVHPDKNMGNEKAVEA 332
           E+EV RLL       D  +   +   E     I LK+ YR+ A++VHPDKN  + +A EA
Sbjct: 426 EEEVARLLTMAGVPEDELNPFHVLGVEATASDIELKKAYRQLAVMVHPDKNH-HPRAEEA 484

Query: 333 FKKLQNAYEVLFDSFKRKAYD-DELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEAD 391
           FK L+ A++++ +  +RK Y+   +   EL      F S  Q                  
Sbjct: 485 FKVLRAAWDIVSNPERRKEYEMKRMAENELSRSVNEFLSKLQ------------------ 526

Query: 392 CDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFF 451
            DD       + C +C   H   E  +   SAR+C ECN  H A++GD W E S   L  
Sbjct: 527 -DDLKEAMNTMMCSRCQGKHRRFEMDREPKSARYCAECNRLHPAEEGDFWAESSMLGLKI 585

Query: 452 GIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSS 511
             F  +D          ++Y+ T+W  CQ +    +TH+  +H++       +   GTS 
Sbjct: 586 TYFALMD---------GKVYDITEWAGCQRVGISPDTHRVPYHISFG-----SRVPGTSG 631

Query: 512 GQRG-GRMPPPNLEETMT 528
            QR     PP +L++ ++
Sbjct: 632 RQRATPESPPADLQDFLS 649

Regulates the export of target proteins, such as DRD1, from the endoplasmic reticulum to the cell surface.
Rattus norvegicus (taxid: 10116)

>sp|Q921R4|DJC14_MOUSE DnaJ homolog subfamily C member 14 OS=Mus musculus GN=Dnajc14 PE=2 SV=2

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 45/260 (17%)

Query: 278 EDEVVRLLNCT-------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAV 330
           E+EV RLL          + +  LG+        + LK+ YR+ A++VHPDKN  + +A 
Sbjct: 426 EEEVTRLLTMAGVPEDELNPFHVLGVE--ATASDTELKKAYRQLAVMVHPDKNH-HPRAE 482

Query: 331 EAFKKLQNAYEVLFDSFKRKAYD-DELRREELLDYFRRFQSASQKNGRHGFFGSGYARSE 389
           EAFK L+ A++++ +  +RK Y+   +   EL      F S  Q                
Sbjct: 483 EAFKILRAAWDIVSNPERRKEYEMKRMAENELSRSVNEFLSKLQ---------------- 526

Query: 390 ADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPL 449
              DD       + C +C   H   E  +   SAR+C ECN  H A++GD W E S   L
Sbjct: 527 ---DDLKEAMNTMMCSRCQGKHRRFEMDREPKSARYCAECNRLHPAEEGDFWAESSMLGL 583

Query: 450 FFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGT 509
               F  +D          ++Y+ T+W  CQ +    +TH+  +H++       +   GT
Sbjct: 584 KITYFALMD---------GKVYDITEWAGCQRVGISPDTHRVPYHISFG-----SRVPGT 629

Query: 510 SSGQRG-GRMPPPNLEETMT 528
           S  QR     PP +L++ ++
Sbjct: 630 SGRQRATPESPPADLQDFLS 649

Regulates the export of target proteins, such as DRD1, from the endoplasmic reticulum to the cell surface.

Mus musculus (taxid: 10090)

>sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 45/260 (17%)

Query: 278 EDEVVRLLNCT-------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAV 330
           E+EV RLL          + +  LG+    + DV  LK+ YR+ A++VHPDKN  + +A 
Sbjct: 425 EEEVARLLTMAGVPEDELNPFHVLGVEATAS-DVE-LKKAYRQLAVMVHPDKNH-HPRAE 481

Query: 331 EAFKKLQNAYEVLFDSFKRKAYD-DELRREELLDYFRRFQSASQKNGRHGFFGSGYARSE 389
           EAFK L+ A++++ ++ KRK Y+   +   EL      F S  Q                
Sbjct: 482 EAFKVLRAAWDIVSNAEKRKEYEMKRMAENELSRSVNEFLSKLQ---------------- 525

Query: 390 ADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPL 449
              DD       + C +C   H   E  +   SAR+C ECN  H A++GD W E S   L
Sbjct: 526 ---DDLKEAMNTMMCSRCQGKHRRFEMDREPKSARYCAECNRLHPAEEGDFWAESSMLGL 582

Query: 450 FFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGT 509
               F  +D          ++Y+ T+W  CQ +    +TH+  +H++       +   GT
Sbjct: 583 KITYFALMD---------GKVYDITEWAGCQRVGISPDTHRVPYHISFG-----SRIPGT 628

Query: 510 SSGQRG-GRMPPPNLEETMT 528
              QR     PP +L++ ++
Sbjct: 629 RGRQRATPDAPPADLQDFLS 648

Regulates the export of target proteins, such as DRD1, from the endoplasmic reticulum to the cell surface.

Homo sapiens (taxid: 9606)

>sp|Q95J56|DJC14_BOVIN DnaJ homolog subfamily C member 14 OS=Bos taurus GN=DNAJC14 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 59/265 (22%)

Query: 278 EDEVVRLLNCT-------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAV 330
           E+EV RLL          + +  LG+    + DV  LK+ YR+ A++VHPDKN  + +A 
Sbjct: 426 EEEVARLLTMAGVPEDELNPFHVLGVEATAS-DVE-LKKAYRQLAVMVHPDKNH-HPRAE 482

Query: 331 EAFKKLQNAYEVLFDSFKRKAYD------DELRREELLDYFRRFQSASQKNGRHGFFGSG 384
           EAFK L+ A++++ +  +RK Y+      +EL R  + ++  + Q A             
Sbjct: 483 EAFKVLRAAWDIVSNPERRKEYEMKRMAENELSRS-VNEFLSKLQEAMNT---------- 531

Query: 385 YARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQ 444
                            + C +C   H   E  +   SAR+C ECN  H A++GD W E 
Sbjct: 532 -----------------MMCSRCQGKHRRFEMDREPKSARYCAECNRLHPAEEGDFWAES 574

Query: 445 SSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHN 504
           S   L    F  +D          ++Y+ T+W  CQ +    +TH+  +H++       +
Sbjct: 575 SMLGLKITYFALMD---------GKVYDITEWAGCQRVGISPDTHRVPYHISFG-----S 620

Query: 505 TSKGTSSGQRG-GRMPPPNLEETMT 528
              GTS  QR     PP +L++ ++
Sbjct: 621 RMPGTSGRQRATPDAPPADLQDFLS 645

Regulates the export of target proteins, such as DRD1, from the endoplasmic reticulum to the cell surface (By similarity). Promotes cleavage of pestivirus polyprotein.

Bos taurus (taxid: 9913)

>sp|Q0AIY0|DNAJ_NITEC Chaperone protein DnaJ OS=Nitrosomonas eutropha (strain C91) GN=dnaJ PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  + D S LK+ YRK AM  HPD+N G+ KA E FK+++ AYEVL DS K
Sbjct: 5   DYYEVLGVGR--DADESELKKVYRKLAMKYHPDRNAGDAKAEERFKEIKEAYEVLSDSNK 62

Query: 349 RKAYD 353
           R AYD
Sbjct: 63  RAAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nitrosomonas eutropha (strain C91) (taxid: 335283)

>sp|O06431|DNAJ_NITEU Chaperone protein DnaJ OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=dnaJ PE=3 SV=2

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           +D+Y  LG+ R  + D + LK+ YRK AM  HPD+N G+ KA E FK ++ AYE+L D  
Sbjct: 4   SDYYEVLGVGR--DADENELKKAYRKLAMKYHPDRNAGDTKAEERFKNIKEAYEILSDPN 61

Query: 348 KRKAYD 353
           KR AYD
Sbjct: 62  KRAAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) (taxid: 228410)

>sp|Q5FGQ8|DNAJ_EHRRG Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 16/106 (15%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           +D+Y  LGLS+  N     +K+ YRK A+  HPDKN G++ A E FK+L  AY+VL D  
Sbjct: 4   SDYYDLLGLSK--NATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKD 61

Query: 348 KRKAYDDELRREELLDYFRRFQSA-SQKNGRHGF-FGSGYARSEAD 391
           KR AYD            R   SA S  +GR GF F SG++   +D
Sbjct: 62  KRAAYD------------RYGHSAFSDGSGRGGFDFNSGFSTDFSD 95

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Ehrlichia ruminantium (strain Gardel) (taxid: 302409)

>sp|B1ZUS0|DNAJ_OPITP Chaperone protein DnaJ OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ +        LK+ YRKKA+  HPDKN GN++A E FKK+ +AYEVL D  K
Sbjct: 5   DYYELLGVQK--GASEEELKKAYRKKAVQYHPDKNPGNKEAEEMFKKISHAYEVLKDPEK 62

Query: 349 RKAYD 353
           R AYD
Sbjct: 63  RAAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Opitutus terrae (strain DSM 11246 / PB90-1) (taxid: 452637)

>sp|Q5HCG4|DNAJ_EHRRW Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Welgevonden) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 16/106 (15%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           +D+Y  LGLS+  N     +K+ YRK A+  HPDKN G++ A E FK+L  AY+VL D  
Sbjct: 4   SDYYDLLGLSK--NATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKD 61

Query: 348 KRKAYDDELRREELLDYFRRFQSA-SQKNGRHGF-FGSGYARSEAD 391
           KR AYD            R   SA S  +GR GF F SG++   +D
Sbjct: 62  KRAAYD------------RYGHSAFSDGSGRGGFDFNSGFSTDFSD 95

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Ehrlichia ruminantium (strain Welgevonden) (taxid: 254945)

>sp|Q2GLU9|DNAJ_ANAPZ Chaperone protein DnaJ OS=Anaplasma phagocytophilum (strain HZ) GN=dnaJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 285 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344
           +   D+Y  LG+SR        +K+ YRKK    HPD+N GN++A E FKK+  AY+VL 
Sbjct: 1   MGSNDYYDLLGVSR--GASEEEIKKSYRKKVFEYHPDRNPGNKEAEEKFKKISEAYDVLT 58

Query: 345 DSFKRKAYD 353
           DS KR AYD
Sbjct: 59  DSDKRAAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anaplasma phagocytophilum (strain HZ) (taxid: 212042)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	588
255556474	741	conserved hypothetical protein [Ricinus	0.957	0.759	0.727	0.0
225432039	592	PREDICTED: uncharacterized protein LOC10	0.954	0.947	0.712	0.0
296083212	749	unnamed protein product [Vitis vinifera]	0.940	0.738	0.711	0.0
356529091	743	PREDICTED: uncharacterized protein LOC10	0.960	0.760	0.670	0.0
356555977	744	PREDICTED: dnaJ homolog subfamily C memb	0.959	0.758	0.675	0.0
224112018	579	predicted protein [Populus trichocarpa]	0.937	0.951	0.700	0.0
357448821	727	Chaperone protein dnaJ [Medicago truncat	0.971	0.785	0.636	0.0
449462182	730	PREDICTED: uncharacterized protein LOC10	0.948	0.764	0.644	0.0
449511895	585	PREDICTED: uncharacterized LOC101205292	0.947	0.952	0.646	0.0
15240510	695	chaperone DnaJ-domain containing protein	0.901	0.762	0.598	0.0

>gi|255556474|ref|XP_002519271.1| conserved hypothetical protein [Ricinus communis] gi|223541586|gb|EEF43135.1| conserved hypothetical protein [Ricinus communis]

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/566 (72%), Positives = 479/566 (84%), Gaps = 3/566 (0%)

Query: 1   MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLM---TNIYNAHDYVSRKVQQVY 57
           +ME ++LS NV VR+LR   + TLKAA   LER  P+ +   +N+YNA DYV+ KV+Q Y
Sbjct: 153 VMENMELSGNVAVRNLRTLALSTLKAAGVWLERHRPLFVRVTSNLYNARDYVNMKVEQAY 212

Query: 58  PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF 117
           PV    L     IMLLLSM+WLD T+RGIDSF+R+GTTSFFSVIWCSI+SV+AMVG FKF
Sbjct: 213 PVVSKWLIQLGNIMLLLSMVWLDFTLRGIDSFLRLGTTSFFSVIWCSIMSVLAMVGTFKF 272

Query: 118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLAL 177
           L+VL +AA V   IG  L L+VVA SG + LWLYGSFWTT FVI +GGLAF  +HER+AL
Sbjct: 273 LIVLAIAACVGVIIGLTLGLLVVAFSGIVFLWLYGSFWTTMFVIIIGGLAFVLSHERVAL 332

Query: 178 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAG 237
            ITT+YSIYCAW YVGWLGLLLA NLSF+SSD LI+FLK+ +NQ +  +  EQ +G+   
Sbjct: 333 LITTVYSIYCAWIYVGWLGLLLAFNLSFLSSDILIYFLKNTINQRRRSNPTEQAAGVDGQ 392

Query: 238 PSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLS 297
           P F NGE  HP+F++  PGLS+DRSPGVPSTSG DSE+TSE+EV+RLLNCTDHYS LGLS
Sbjct: 393 PGFFNGESFHPSFTETGPGLSSDRSPGVPSTSGADSELTSEEEVIRLLNCTDHYSVLGLS 452

Query: 298 RFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357
           R+ENVDVS+LKREYRKKAMLVHPDKNMGNEKA EAFKKLQNAYE+L DS KRKAYDDELR
Sbjct: 453 RYENVDVSVLKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEILLDSLKRKAYDDELR 512

Query: 358 REELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETK 417
           REELL+YFRRFQS SQKNG HGFF SG+ARSEA+ ++PFGESRRIACKKCNNFHVW+ TK
Sbjct: 513 REELLNYFRRFQSTSQKNGAHGFFASGFARSEAEGEEPFGESRRIACKKCNNFHVWVHTK 572

Query: 418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477
           KSK+ ARWCQEC D+HQAKDGDGWVEQSS+P FFG+ QKVD   AYVCA+S+IY+AT+WY
Sbjct: 573 KSKSRARWCQECKDFHQAKDGDGWVEQSSQPFFFGLLQKVDNASAYVCADSKIYDATEWY 632

Query: 478 ICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQ 537
           ICQGMRCPANTHKPSFHVNTS+TSKHNTSKG+SSGQR GRMP  N+EETMTE+EF EWLQ
Sbjct: 633 ICQGMRCPANTHKPSFHVNTSITSKHNTSKGSSSGQRSGRMPASNMEETMTEEEFFEWLQ 692

Query: 538 NAVQAGLFDNFSGSTSTDSPTAKAGS 563
           NAVQAG+FDNFSG+TS +SP+A+AG+
Sbjct: 693 NAVQAGVFDNFSGNTSAESPSARAGN 718

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432039|ref|XP_002280185.1| PREDICTED: uncharacterized protein LOC100246610 [Vitis vinifera]

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/566 (71%), Positives = 470/566 (83%), Gaps = 5/566 (0%)

Query: 2   MEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMT---NIYNAHDYVSRKVQQVYP 58
           M+  + S  +VVRSLR   +  LKAA E LERQ P  ++    I NA D +  K++Q YP
Sbjct: 1   MKNSEFSDTMVVRSLRASALSILKAANEWLERQKPFFISLNIRILNARDCIRMKIEQTYP 60

Query: 59  VALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFL 118
           + L  L +F  IMLLLSM+WLDCTIRGIDSF+RMGTTSFFSVIWCSI SV+AM+GM KFL
Sbjct: 61  IILKWLMYFGNIMLLLSMVWLDCTIRGIDSFLRMGTTSFFSVIWCSIFSVVAMIGMSKFL 120

Query: 119 MVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALF 178
           ++L+V+ L+  F+GF LA +V+A+SG ++LW+YGSFWTT  +IF GGLAF  +HER AL 
Sbjct: 121 IILIVSVLMGVFLGFTLASLVIAISGVVILWIYGSFWTTALIIFCGGLAFTLSHERAALL 180

Query: 179 ITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSP-EQTSGMQAG 237
           ITT+YS+YCAWTYVGWLGL++ALNLSF+SSDALI+ LK+  N+H+  S P EQT+GM+  
Sbjct: 181 ITTIYSVYCAWTYVGWLGLIVALNLSFISSDALIYLLKNTTNEHRRSSRPPEQTAGMRGR 240

Query: 238 PSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLS 297
           P F NGE  H +FS+     + DRS GV STSG DSE+TSE+EVVRLLNCTDHYSALGLS
Sbjct: 241 PGFFNGEQPHASFSETGSEQAPDRSAGVTSTSGADSEITSEEEVVRLLNCTDHYSALGLS 300

Query: 298 RFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357
           RFEN+DVS+LKREYRKKAMLVHPDKNMGNEKA EAFKKLQNAYEVL DS KRKAYDDELR
Sbjct: 301 RFENIDVSLLKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSLKRKAYDDELR 360

Query: 358 REELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETK 417
           REELL+ FRRFQ+ASQKNGRHG F SG  RSEA+ +DPFGESRRIACKKC NFHVW+ TK
Sbjct: 361 REELLNCFRRFQTASQKNGRHGPFTSGIPRSEAEVEDPFGESRRIACKKCGNFHVWVHTK 420

Query: 418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477
           K+K+ ARWCQ+C D+HQAKDGDGWVEQS++P FFGI QKVD P AYVCA SRIY+AT+WY
Sbjct: 421 KTKSRARWCQDCKDFHQAKDGDGWVEQSTQPFFFGILQKVDAPSAYVCAESRIYDATEWY 480

Query: 478 ICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQ 537
           ICQGMRCPANTHKPSFHVNTSVTSKHN SKGTSSGQ+GG MP PN+EE MTE+EF EWLQ
Sbjct: 481 ICQGMRCPANTHKPSFHVNTSVTSKHNGSKGTSSGQKGG-MPTPNMEENMTEEEFFEWLQ 539

Query: 538 NAVQAGLFDNFSGSTSTDSPTAKAGS 563
           NAVQAG+FD   GSTS +SP+AKAG+
Sbjct: 540 NAVQAGMFDTCGGSTSAESPSAKAGN 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083212|emb|CBI22848.3| unnamed protein product [Vitis vinifera]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/558 (71%), Positives = 462/558 (82%), Gaps = 5/558 (0%)

Query: 2   MEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMT---NIYNAHDYVSRKVQQVYP 58
           M+  + S  +VVRSLR   +  LKAA E LERQ P  ++    I NA D +  K++Q YP
Sbjct: 156 MKNSEFSDTMVVRSLRASALSILKAANEWLERQKPFFISLNIRILNARDCIRMKIEQTYP 215

Query: 59  VALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFL 118
           + L  L +F  IMLLLSM+WLDCTIRGIDSF+RMGTTSFFSVIWCSI SV+AM+GM KFL
Sbjct: 216 IILKWLMYFGNIMLLLSMVWLDCTIRGIDSFLRMGTTSFFSVIWCSIFSVVAMIGMSKFL 275

Query: 119 MVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALF 178
           ++L+V+ L+  F+GF LA +V+A+SG ++LW+YGSFWTT  +IF GGLAF  +HER AL 
Sbjct: 276 IILIVSVLMGVFLGFTLASLVIAISGVVILWIYGSFWTTALIIFCGGLAFTLSHERAALL 335

Query: 179 ITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDS-SPEQTSGMQAG 237
           ITT+YS+YCAWTYVGWLGL++ALNLSF+SSDALI+ LK+  N+H+  S  PEQT+GM+  
Sbjct: 336 ITTIYSVYCAWTYVGWLGLIVALNLSFISSDALIYLLKNTTNEHRRSSRPPEQTAGMRGR 395

Query: 238 PSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLS 297
           P F NGE  H +FS+     + DRS GV STSG DSE+TSE+EVVRLLNCTDHYSALGLS
Sbjct: 396 PGFFNGEQPHASFSETGSEQAPDRSAGVTSTSGADSEITSEEEVVRLLNCTDHYSALGLS 455

Query: 298 RFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357
           RFEN+DVS+LKREYRKKAMLVHPDKNMGNEKA EAFKKLQNAYEVL DS KRKAYDDELR
Sbjct: 456 RFENIDVSLLKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSLKRKAYDDELR 515

Query: 358 REELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETK 417
           REELL+ FRRFQ+ASQKNGRHG F SG  RSEA+ +DPFGESRRIACKKC NFHVW+ TK
Sbjct: 516 REELLNCFRRFQTASQKNGRHGPFTSGIPRSEAEVEDPFGESRRIACKKCGNFHVWVHTK 575

Query: 418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477
           K+K+ ARWCQ+C D+HQAKDGDGWVEQS++P FFGI QKVD P AYVCA SRIY+AT+WY
Sbjct: 576 KTKSRARWCQDCKDFHQAKDGDGWVEQSTQPFFFGILQKVDAPSAYVCAESRIYDATEWY 635

Query: 478 ICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQ 537
           ICQGMRCPANTHKPSFHVNTSVTSKHN SKGTSSGQ+GG MP PN+EE MTE+EF EWLQ
Sbjct: 636 ICQGMRCPANTHKPSFHVNTSVTSKHNGSKGTSSGQKGG-MPTPNMEENMTEEEFFEWLQ 694

Query: 538 NAVQAGLFDNFSGSTSTD 555
           NAVQAG+FD   GSTS +
Sbjct: 695 NAVQAGMFDTCGGSTSAE 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529091|ref|XP_003533130.1| PREDICTED: uncharacterized protein LOC100812282 [Glycine max]

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/570 (67%), Positives = 453/570 (79%), Gaps = 5/570 (0%)

Query: 1   MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPM---LMTNIYNAHDYVSRKVQQVY 57
           ++EKV+L+ NV++R LR+ V     A  E L RQ+P+   L T ++ A   V  K    Y
Sbjct: 149 VVEKVELADNVIIRRLRLLVFSIFTAVSEWLTRQTPLFVSLRTIVFEACHNVRTKFVLAY 208

Query: 58  PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF 117
           P+ L  L HF  IMLLLS+ WLDC +RG+DSF+RMGTTSFFSVIWCSI SVI+M+GM KF
Sbjct: 209 PIVLKCLMHFGNIMLLLSVFWLDCALRGVDSFIRMGTTSFFSVIWCSIFSVISMIGMLKF 268

Query: 118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLAL 177
           L VL +AAL+  F+G  LA++VVA+ G I LW YGSFWTT F I LGGL F  +HER+AL
Sbjct: 269 LAVLGLAALIGCFLGLMLAILVVAIIGVITLWFYGSFWTTAFFIILGGLTFMLSHERVAL 328

Query: 178 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAG 237
            ITT+YS+YCA  Y GWLGLLLA NL+F+SSD LI+FLK  + Q    +  EQ +GM   
Sbjct: 329 LITTVYSVYCARLYAGWLGLLLAFNLAFISSDVLIYFLKKNIEQQSRSNPFEQRAGMHGQ 388

Query: 238 PSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLS 297
           P FS+ EP H + S+N  G SADR+ G+PSTSG DS++TSEDEVVRLLNC+DHY+ALG +
Sbjct: 389 PGFSD-EPTHASSSENGQGPSADRNAGIPSTSGVDSDLTSEDEVVRLLNCSDHYAALGFT 447

Query: 298 RFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357
           R++N+DVSILKREYRKKAMLVHPDKNMGNEKA EAFKKLQNAYE+L DS KRKAYDDELR
Sbjct: 448 RYQNIDVSILKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEILMDSLKRKAYDDELR 507

Query: 358 REELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETK 417
           REE+L  FRRF  AS+KNGRHGFF SG+ARS+AD  DPFG+SRRIACK+C  FHVWI TK
Sbjct: 508 REEILSVFRRFHDASRKNGRHGFFPSGFARSDADGKDPFGDSRRIACKRCAGFHVWIHTK 567

Query: 418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477
           K K+ ARWCQ+C D+HQAKDGDGWVEQSS+P  FG+ QKVD P AYVCA SRIY+AT+WY
Sbjct: 568 KQKSRARWCQDCQDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPSAYVCAGSRIYDATEWY 627

Query: 478 ICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQ 537
           ICQGMRCPANTHKPSFHVNT++ SKHN+ KGTSSGQRGG MP PN+EETMTE+E  EWLQ
Sbjct: 628 ICQGMRCPANTHKPSFHVNTNLMSKHNSGKGTSSGQRGGHMPTPNIEETMTEEELFEWLQ 687

Query: 538 NAVQAGLFDNFSGSTSTDSPTAKAGSSSKS 567
           NAV AG FDNFSG T+T+SP+ K+G+  KS
Sbjct: 688 NAVHAGAFDNFSG-TATESPSPKSGNGMKS 716

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555977|ref|XP_003546304.1| PREDICTED: dnaJ homolog subfamily C member 14-like [Glycine max]

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/570 (67%), Positives = 457/570 (80%), Gaps = 6/570 (1%)

Query: 1   MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPM---LMTNIYNAHDYVSRKVQQVY 57
           ++EKV+L+ NV++R LR+ V     AA E L R +P+   L T ++   + V  KV Q Y
Sbjct: 149 VVEKVELADNVIIRRLRLSVFSIFTAASEWLNRHTPLFVSLRTIMFETCNTVRTKVVQAY 208

Query: 58  PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF 117
           PV L  L H   IMLLL + WLDC +RG+DSF+RMGTTSFFSVIWCSI SVI+M+GM KF
Sbjct: 209 PVVLKWLMHLGNIMLLLLVFWLDCALRGVDSFVRMGTTSFFSVIWCSIFSVISMIGMLKF 268

Query: 118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLAL 177
           L VL +AAL+ FF+G  LA++VVA+ G + LW YGSFWTT F I LGGLAF   HER+AL
Sbjct: 269 LAVLGLAALIGFFLGLMLAILVVAIIGVVTLWFYGSFWTTAFFIILGGLAFMLRHERVAL 328

Query: 178 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAG 237
            ITT+YS+YCAW YVGWLGLLLA N++F+SSD LI+FLK  + Q    +  E  +GM   
Sbjct: 329 LITTVYSVYCAWLYVGWLGLLLAFNITFISSDVLIYFLKKNIEQQSRSNPFEHRAGMHE- 387

Query: 238 PSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLS 297
           P FS+ EP H + S+N  G SADR+ G+PSTSG DS++TSEDEVVRLLNC+DHY+ALG  
Sbjct: 388 PGFSD-EPTHASSSENGQGPSADRNAGIPSTSGVDSDVTSEDEVVRLLNCSDHYAALGFM 446

Query: 298 RFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357
           R++N+DVSILKREYRKKAMLVHPDKNMGNEKA EAFKKLQNAYE+L DS KRKAYDDELR
Sbjct: 447 RYQNIDVSILKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEILMDSLKRKAYDDELR 506

Query: 358 REELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETK 417
           REE+L  FRRF  AS+KNGRHGFF SG+ARS+AD +DPFG+SRRIACK+C  FHVWI TK
Sbjct: 507 REEILSVFRRFNDASRKNGRHGFFPSGFARSDADGEDPFGDSRRIACKRCGGFHVWIHTK 566

Query: 418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477
           K K+ ARWCQ+C D+HQAKDGDGWVEQSS+P  FG+ QKVD P AYVCA SRIY+AT+WY
Sbjct: 567 KQKSRARWCQDCQDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPSAYVCAGSRIYDATEWY 626

Query: 478 ICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQ 537
           ICQGMRCPANTHKPSFHVNT++ SKHN+ KGTSSGQRGGRMP PN+EETMTE+EF EWLQ
Sbjct: 627 ICQGMRCPANTHKPSFHVNTNLMSKHNSGKGTSSGQRGGRMPTPNIEETMTEEEFFEWLQ 686

Query: 538 NAVQAGLFDNFSGSTSTDSPTAKAGSSSKS 567
           NAVQ G FDNFSG T+T+SP+ K+G+  KS
Sbjct: 687 NAVQTGAFDNFSG-TATESPSPKSGNGMKS 715

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112018|ref|XP_002316054.1| predicted protein [Populus trichocarpa] gi|222865094|gb|EEF02225.1| predicted protein [Populus trichocarpa]

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/555 (70%), Positives = 450/555 (81%), Gaps = 4/555 (0%)

Query: 11  VVVRSLRVYVVPTLKAAIELLERQSP---MLMTNIYNAHDYVSRKVQQVYPVALNHLGHF 67
           +VV +LR   +  LK A E LERQ      L TNIY + DYV  KV + YPV L  L  F
Sbjct: 1   MVVGNLRASALSMLKVAGEWLERQEQPFVSLKTNIYASRDYVKMKVAKAYPVVLKWLLQF 60

Query: 68  AKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALV 127
             I+LLLSM+WLDCT+RG+DSF+R+GTTSFFSVIWCSILSVIAMVG+ K L++L +AA V
Sbjct: 61  GNIVLLLSMVWLDCTLRGMDSFLRLGTTSFFSVIWCSILSVIAMVGISKILIILAIAAFV 120

Query: 128 AFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYC 187
             FIG  L L++VA+SG + LW YGSFWTT FVI + G +F    ERL L I T+YS YC
Sbjct: 121 GVFIGLILGLLIVAISGLVFLWFYGSFWTTVFVIIISGNSFSPFQERLTLLIITIYSTYC 180

Query: 188 AWTYVGWLGLLLALNLSFVSSDALIFFLKSKVN-QHKTDSSPEQTSGMQAGPSFSNGEPV 246
            W+Y GWLGLLLALNLSF+SSD LI+ LK+ +N Q ++  + E ++GM+  P F N +  
Sbjct: 181 VWSYAGWLGLLLALNLSFISSDILIYILKNNINRQRRSGRTSEHSAGMEGRPGFFNEDSF 240

Query: 247 HPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSI 306
           H +  +  PG SADRSPGVPSTSG DSE+TSE+EVVRLLNCTDHYSALGLSR+EN+DVS+
Sbjct: 241 HASSFETGPGFSADRSPGVPSTSGADSELTSEEEVVRLLNCTDHYSALGLSRYENMDVSV 300

Query: 307 LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 366
           LKREYRKKAMLVHPDKNMGNEKA EAFKKLQNAYEVL DS KRKAYDDELRRE+LL+YFR
Sbjct: 301 LKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSLKRKAYDDELRREDLLNYFR 360

Query: 367 RFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWC 426
            FQS SQKNG HG F SG+ARSE D DDPFGESRRIACK+C NFH+WI TKKSK  ARWC
Sbjct: 361 SFQSTSQKNGEHGLFASGFARSEVDGDDPFGESRRIACKRCGNFHLWIHTKKSKLQARWC 420

Query: 427 QECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPA 486
           Q+C D+HQAKDGDGWVEQSS+P  FG+ QKVDVP AYVCA+S+IY+ATDWYICQGMRCP+
Sbjct: 421 QDCQDFHQAKDGDGWVEQSSQPFLFGLLQKVDVPTAYVCADSKIYDATDWYICQGMRCPS 480

Query: 487 NTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWLQNAVQAGLFD 546
           N+HKPSFHVNTSVTSKHNT KG SSGQR GRMP PN+EETMTE+EF EWLQNAVQAG+F+
Sbjct: 481 NSHKPSFHVNTSVTSKHNTGKGPSSGQRSGRMPAPNVEETMTEEEFFEWLQNAVQAGVFN 540

Query: 547 NFSGSTSTDSPTAKA 561
           N S  TST+SP+AKA
Sbjct: 541 NHSAGTSTESPSAKA 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448821|ref|XP_003594686.1| Chaperone protein dnaJ [Medicago truncatula] gi|124361108|gb|ABN09080.1| Heat shock protein DnaJ [Medicago truncatula] gi|355483734|gb|AES64937.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/581 (63%), Positives = 458/581 (78%), Gaps = 10/581 (1%)

Query: 1   MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPM---LMTNIYNAHDYVSRKVQQVY 57
           ++E  +L+ +  +R LR+ V+    A  E L RQ P+   + T +  A+     K +Q Y
Sbjct: 133 LVENSELADHPAIRRLRLSVLSIFTAVTEWLIRQKPLFASIRTTVLEAYANFRTKFKQAY 192

Query: 58  PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF 117
           P+ L  L HF  I+LLLS+ WLDC +RG DSF+RMGTTSFFSVIWCSI SVI+M+GM KF
Sbjct: 193 PIVLTWLMHFGSIILLLSVFWLDCAVRGFDSFVRMGTTSFFSVIWCSIFSVISMIGMLKF 252

Query: 118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLAL 177
           L+VL +AAL+ FF+GF +A +VVA+ G ++LW YGSFWTT F+I LGGLAF   HER+AL
Sbjct: 253 LVVLGLAALIGFFVGFVIAALVVAIIGVVMLWFYGSFWTTAFIIILGGLAFMLRHERVAL 312

Query: 178 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAG 237
            ITT+YS+YCAW YVGWL L LA NL+F+SSD LI+FLK  ++Q    +  EQ +GM + 
Sbjct: 313 LITTVYSVYCAWLYVGWLRLFLAFNLAFISSDVLIYFLKKNIDQQSRSNPFEQRAGMNSQ 372

Query: 238 PSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLS 297
           P F N E +  + S+N PG SADR+ GVPSTSG DS++TSEDEVVRLL+C DHYSALGL+
Sbjct: 373 PGFGNDESIPSSSSENGPGPSADRNAGVPSTSGADSDVTSEDEVVRLLHCFDHYSALGLT 432

Query: 298 RFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 357
           R++++DVS+LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYE+L DS KRKAYDDELR
Sbjct: 433 RYQDIDVSVLKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEILNDSLKRKAYDDELR 492

Query: 358 REELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETK 417
           REE+L+ F RFQ+A ++N RHGFF SG+  S+AD +DPFGESRRIACK+C  FH+WI TK
Sbjct: 493 REEILNVFNRFQNAPRRNSRHGFFSSGFGHSDADGEDPFGESRRIACKRCGGFHLWIHTK 552

Query: 418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 477
           K K+ ARWCQ+C D+HQAKDGDGWVEQSS+P  FG+ QKVD P AYVCA+S+I++AT+WY
Sbjct: 553 KQKSRARWCQDCQDFHQAKDGDGWVEQSSQPFLFGLIQKVDTPSAYVCADSKIFDATEWY 612

Query: 478 ICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSG-QRGGRM------PPPNLEETMTED 530
           ICQGMRCPANTHKPSFHVNTS+ SK N  KGTSS  QRGGR+      P PN EETMTE+
Sbjct: 613 ICQGMRCPANTHKPSFHVNTSIMSKQNPGKGTSSSTQRGGRVPTPPNMPTPNFEETMTEE 672

Query: 531 EFLEWLQNAVQAGLFDNFSGSTSTDSPTAKAGSSSKSSGTA 571
           EF+EWLQNAVQ+G FDNF+G T+T+SP+ K+G+  K+ GT+
Sbjct: 673 EFVEWLQNAVQSGAFDNFNGGTATESPSPKSGNGMKNPGTS 713

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462182|ref|XP_004148820.1| PREDICTED: uncharacterized protein LOC101205292 [Cucumis sativus]

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/569 (64%), Positives = 446/569 (78%), Gaps = 11/569 (1%)

Query: 1   MMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYN---AHDYVSRKVQQVY 57
           +M  +  S NV+V+S    +    +A+   LE+  P+L +   N     DYV +K+   Y
Sbjct: 145 VMANLNFSDNVLVKSSVESMSSIFEASHVFLEQHRPLLNSLKNNLLNTSDYVVKKIMTAY 204

Query: 58  PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF 117
           P+ L  + HF  I+LL S++WLDC +RGIDSF+RMGTTSFF+VIW SILS IAMVG  KF
Sbjct: 205 PIVLKWMMHFGNIILLFSIVWLDCALRGIDSFIRMGTTSFFAVIWFSILSTIAMVGFLKF 264

Query: 118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLAL 177
           L+VLV AA +  F+GFA A++V+A+SG   LW YG+FW T  +IFLGGLAF  +HER+AL
Sbjct: 265 LVVLVAAASLGIFVGFAFAILVIAISGAAFLWFYGNFWMTMLIIFLGGLAFILSHERVAL 324

Query: 178 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHK-TDSSPEQTSGMQA 236
            ITT+YS+YCAW   GWLGLLL LNLSF+SSDALI+ LK+ +N+H+ ++  PEQT+GMQ 
Sbjct: 325 SITTLYSVYCAWVCTGWLGLLLGLNLSFISSDALIYVLKNNMNEHRRSNRYPEQTTGMQD 384

Query: 237 GPSFSNGEPVHPAFSD-NVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALG 295
             SFS+ +P+  + S+ +  G +ADR PG PSTSG DSE++SEDEVVRLLNC+DHY+ALG
Sbjct: 385 QSSFSHDDPMQTSSSEFSGTGFAADRCPGTPSTSGADSEISSEDEVVRLLNCSDHYAALG 444

Query: 296 LSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 355
           LSR+EN+D S+LK+EYRKKAMLVHPDKNMGNEKA EAFKKLQNAYEVL DS KRK YDDE
Sbjct: 445 LSRYENIDTSLLKKEYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSIKRKTYDDE 504

Query: 356 LRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIE 415
           LRREELL+ FRRFQS SQK+G  GF      RS  + +DPFGESRRIACKKCNNFH+WI 
Sbjct: 505 LRREELLNIFRRFQSDSQKSGPFGF-----PRSATNREDPFGESRRIACKKCNNFHLWIH 559

Query: 416 TKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATD 475
           T+K K+ ARWCQEC D+HQAKDGDGWVEQSS+P  FG+ QKVD PCAYVCA SRIY+AT 
Sbjct: 560 TRKLKSQARWCQECKDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPCAYVCAESRIYDATG 619

Query: 476 WYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEW 535
           WY+CQGMRCPANTHKPSFHVNTSVTSK NT++G+SS QRGG+MP  N+EE MTE+EF EW
Sbjct: 620 WYVCQGMRCPANTHKPSFHVNTSVTSKQNTTRGSSSSQRGGQMPASNIEENMTEEEFFEW 679

Query: 536 LQNAVQAGLFDNFSGSTSTDSPTAKAGSS 564
            QNA+Q G FDN  GS +T+SP +KAG S
Sbjct: 680 FQNAMQTGAFDNVGGS-ATESPPSKAGGS 707

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511895|ref|XP_004164082.1| PREDICTED: uncharacterized LOC101205292 [Cucumis sativus]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/568 (64%), Positives = 445/568 (78%), Gaps = 11/568 (1%)

Query: 2   MEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYN---AHDYVSRKVQQVYP 58
           M  +  S NV+V+S    +    +A+   LE+  P+L +   N     DYV +K+   YP
Sbjct: 1   MANLNFSDNVLVKSSVESMSSIFEASHVFLEQHRPLLNSLKNNLLNTSDYVVKKIMTAYP 60

Query: 59  VALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFL 118
           + L  + HF  I+LL S++WLDC +RGIDSF+RMGTTSFF+VIW SILS IAMVG  KFL
Sbjct: 61  IVLKWMMHFGNIILLFSIVWLDCALRGIDSFIRMGTTSFFAVIWFSILSTIAMVGFLKFL 120

Query: 119 MVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALF 178
           +VLV AA +  F+GFA A++V+A+SG   LW YG+FW T  +IFLGGLAF  +HER+AL 
Sbjct: 121 VVLVAAASLGIFVGFAFAILVIAISGAAFLWFYGNFWMTMLIIFLGGLAFILSHERVALS 180

Query: 179 ITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHK-TDSSPEQTSGMQAG 237
           ITT+YS+YCAW   GWLGLLL LNLSF+SSDALI+ LK+ +N+H+ ++  PEQT+GMQ  
Sbjct: 181 ITTLYSVYCAWVCTGWLGLLLGLNLSFISSDALIYVLKNNMNEHRRSNRYPEQTTGMQDQ 240

Query: 238 PSFSNGEPVHPAFSD-NVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGL 296
            SFS+ +P+  + S+ +  G +ADR PG PSTSG DSE++SEDEVVRLLNC+DHY+ALGL
Sbjct: 241 SSFSHDDPMQTSSSEFSGTGFAADRCPGTPSTSGADSEISSEDEVVRLLNCSDHYAALGL 300

Query: 297 SRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 356
           SR+EN+D S+LK+EYRKKAMLVHPDKNMGNEKA EAFKKLQNAYEVL DS KRK YDDEL
Sbjct: 301 SRYENIDTSLLKKEYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSIKRKTYDDEL 360

Query: 357 RREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIET 416
           RREELL+ FRRFQS SQK+G  GF      RS  + +DPFGESRRIACKKCNNFH+WI T
Sbjct: 361 RREELLNIFRRFQSDSQKSGPFGF-----PRSATNREDPFGESRRIACKKCNNFHLWIHT 415

Query: 417 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDW 476
           +K K+ ARWCQEC D+HQAKDGDGWVEQSS+P  FG+ QKVD PCAYVCA SRIY+AT W
Sbjct: 416 RKLKSQARWCQECKDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPCAYVCAESRIYDATGW 475

Query: 477 YICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGGRMPPPNLEETMTEDEFLEWL 536
           Y+CQGMRCPANTHKPSFHVNTSVTSK NT++G+SS QRGG+MP  N+EE MTE+EF EW 
Sbjct: 476 YVCQGMRCPANTHKPSFHVNTSVTSKQNTTRGSSSSQRGGQMPASNIEENMTEEEFFEWF 535

Query: 537 QNAVQAGLFDNFSGSTSTDSPTAKAGSS 564
           QNA+Q G FDN  GS +T+SP +KAG S
Sbjct: 536 QNAMQTGAFDNVGGS-ATESPPSKAGGS 562

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240510|ref|NP_199769.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|10177624|dbj|BAB10771.1| unnamed protein product [Arabidopsis thaliana] gi|332008449|gb|AED95832.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/550 (59%), Positives = 413/550 (75%), Gaps = 20/550 (3%)

Query: 3   EKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMT---NIYNAHDYVSRKVQQVYPV 59
           E ++L+ N V+R LR+      +   + +ER  P++ +    +Y   D V  K++QV+PV
Sbjct: 133 ENIELAYNAVLRKLRISTATVSREMTKCMERHRPLIDSVKLRVYKGRDLVLTKMRQVFPV 192

Query: 60  ALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLM 119
               L HF  I+LLLS++WLDC IRG DSF+RMGT SFFS++WC + S  +M GM KF++
Sbjct: 193 VFRWLMHFGSIILLLSLVWLDCAIRGFDSFIRMGTASFFSIMWCGLFSAFSMFGMTKFIL 252

Query: 120 VLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFI 179
           + V   LVA FIGF +  V +A+SG +LLWLYGSFWTT   +F GGLAF   HER+ALFI
Sbjct: 253 ISVATVLVALFIGFVVGSVTLAISGLVLLWLYGSFWTTLLFLFFGGLAFMMKHERVALFI 312

Query: 180 TTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPS 239
            T+YS+Y A +YVGWLGLLLA NL+F+S+DALI+F K+K+NQ  T   P           
Sbjct: 313 ITVYSVYSALSYVGWLGLLLAFNLAFISTDALIYFFKNKINQQSTADRPT---------- 362

Query: 240 FSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLSRF 299
               EPV+ +  +N PG   DR PGV STSG DSE+TSEDE+ RLLNC DHYSALGL+R+
Sbjct: 363 ----EPVNDSSFENGPGFPGDRGPGVASTSGTDSELTSEDEIARLLNCPDHYSALGLARY 418

Query: 300 ENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 359
            NVD++ LKREYRKKAMLVHPDKNMGNE+A EAFKKLQNAYEVL DS K+K+YDDEL+RE
Sbjct: 419 GNVDMAYLKREYRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYDDELKRE 478

Query: 360 ELLDYFRRFQSASQKNGR-HGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKK 418
           ELL+YFRRFQ++SQK+ R HGF GSG+  SE + ++ F E R+IACKKC N H W  TKK
Sbjct: 479 ELLNYFRRFQNSSQKDTRGHGFSGSGFGSSEGEGEEAFRECRQIACKKCGNLHAWFLTKK 538

Query: 419 SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 478
           SK++ARWCQ+C ++HQAKDGDGWVEQ+S+ + FG+FQKVD+P AYVCA+S+IY A+ WYI
Sbjct: 539 SKSTARWCQDCKEFHQAKDGDGWVEQASQHVLFGLFQKVDMPRAYVCADSKIYEASQWYI 598

Query: 479 CQGMRCPANTHKPSFHVNTSVTSKHNTSKGTSSGQRGG-RMPPPNLEETMTEDEFLEWLQ 537
           CQGMRCPANTHKPSFHVN + T+    + G SSGQ+G  RMP  N +ETMTE+EF EWLQ
Sbjct: 599 CQGMRCPANTHKPSFHVNMNATAAKRGTSG-SSGQKGNQRMPNTNPDETMTEEEFYEWLQ 657

Query: 538 NAVQAGLFDN 547
           NAVQ+G+FDN
Sbjct: 658 NAVQSGMFDN 667

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	588
TAIR|locus:2157804	695	AT5G49580 [Arabidopsis thalian	0.853	0.722	0.580	2.6e-166
TIGR_CMR|ECH_0025	380	ECH_0025 "chaperone protein Dn	0.163	0.252	0.392	1.1e-09
UNIPROTKB|Q9NXW2	375	DNAJB12 "DnaJ homolog subfamil	0.258	0.405	0.345	2.4e-09
TIGR_CMR|APH_0015	382	APH_0015 "chaperone protein Dn	0.113	0.175	0.478	9.8e-09
UNIPROTKB|Q58DR2	370	DNAJB12 "DnaJ homolog subfamil	0.258	0.410	0.345	1.4e-08
FB|FBgn0037252	970	CG14650 [Drosophila melanogast	0.304	0.184	0.286	1.5e-08
MGI|MGI:1931881	376	Dnajb12 "DnaJ (Hsp40) homolog,	0.260	0.406	0.327	1.9e-08
MGI|MGI:1917854	379	Dnajb14 "DnaJ (Hsp40) homolog,	0.224	0.348	0.333	1.9e-08
UNIPROTKB|Q87W07	488	hopI1 "Type III effector HopI1	0.188	0.227	0.384	1.9e-08
WB|WBGene00001019	401	dnj-1 [Caenorhabditis elegans	0.209	0.306	0.352	3.6e-08

TAIR|locus:2157804 AT5G49580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
 Identities = 303/522 (58%), Positives = 374/522 (71%)

Query:    31 LERQSPMLMT---NIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGID 87
             +ER  P++ +    +Y   D V  K++QV+PV    L HF  I+LLLS++WLDC IRG D
Sbjct:   161 MERHRPLIDSVKLRVYKGRDLVLTKMRQVFPVVFRWLMHFGSIILLLSLVWLDCAIRGFD 220

Query:    88 SFMRMGTTSFFSVIWCSILSVIAMVGMFKXXXXXXXXXXXXXXXXXXXXXXXXXXSGTIL 147
             SF+RMGT SFFS++WC + S  +M GM K                          SG +L
Sbjct:   221 SFIRMGTASFFSIMWCGLFSAFSMFGMTKFILISVATVLVALFIGFVVGSVTLAISGLVL 280

Query:   148 LWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWXXXXXXXXXSFVS 207
             LWLYGSFWTT   +F GGLAF   HER+ALFI T+YS+Y A +YVGW         +F+S
Sbjct:   281 LWLYGSFWTTLLFLFFGGLAFMMKHERVALFIITVYSVYSALSYVGWLGLLLAFNLAFIS 340

Query:   208 SDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPS 267
             +DALI+F K+K+NQ  T   P               EPV+ +  +N PG   DR PGV S
Sbjct:   341 TDALIYFFKNKINQQSTADRPT--------------EPVNDSSFENGPGFPGDRGPGVAS 386

Query:   268 TSGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE 327
             TSG DSE+TSEDE+ RLLNC DHYSALGL+R+ NVD++ LKREYRKKAMLVHPDKNMGNE
Sbjct:   387 TSGTDSELTSEDEIARLLNCPDHYSALGLARYGNVDMAYLKREYRKKAMLVHPDKNMGNE 446

Query:   328 KAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQKNGR-HGFFGSGYA 386
             +A EAFKKLQNAYEVL DS K+K+YDDEL+REELL+YFRRFQ++SQK+ R HGF GSG+ 
Sbjct:   447 RAAEAFKKLQNAYEVLLDSVKQKSYDDELKREELLNYFRRFQNSSQKDTRGHGFSGSGFG 506

Query:   387 RSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSS 446
              SE + ++ F E R+IACKKC N H W  TKKSK++ARWCQ+C ++HQAKDGDGWVEQ+S
Sbjct:   507 SSEGEGEEAFRECRQIACKKCGNLHAWFLTKKSKSTARWCQDCKEFHQAKDGDGWVEQAS 566

Query:   447 EPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTS 506
             + + FG+FQKVD+P AYVCA+S+IY A+ WYICQGMRCPANTHKPSFHVN + T+    +
Sbjct:   567 QHVLFGLFQKVDMPRAYVCADSKIYEASQWYICQGMRCPANTHKPSFHVNMNATAAKRGT 626

Query:   507 KGTSSGQRGG-RMPPPNLEETMTEDEFLEWLQNAVQAGLFDN 547
              G SSGQ+G  RMP  N +ETMTE+EF EWLQNAVQ+G+FDN
Sbjct:   627 SG-SSGQKGNQRMPNTNPDETMTEEEFYEWLQNAVQSGMFDN 667

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TIGR_CMR|ECH_0025 ECH_0025 "chaperone protein DnaJ" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 169 (64.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 44/112 (39%), Positives = 63/112 (56%)

Query:   288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
             +D+Y  LG+S+    +   +K+ YRK A+  HPDKN GN++A E FK+L  AY+VL D  
Sbjct:     4 SDYYDLLGVSKSATPEE--IKKAYRKMALKYHPDKNPGNKEAEEKFKELSEAYDVLIDQD 61

Query:   348 KRKAYDDELRREELLDYFRRFQSASQKNGRHGF-FGSGYARSEADC-DDPFG 397
             KR AYD            +   +A   +GR GF F SG++   +D  +D FG
Sbjct:    62 KRAAYD------------KYGHNAFDSSGRGGFDFNSGFSGDFSDIFNDLFG 101

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|Q9NXW2 DNAJB12 "DnaJ homolog subfamily B member 12" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 58/168 (34%), Positives = 83/168 (49%)

Query:   230 QTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTD 289
             QT+G Q  P+ +       A   + P  SA+   G  ST G  +E  +   V R+  C D
Sbjct:    55 QTAGDQPPPTDTTHATHRKAGGTDAP--SANGEAGGESTKGYTAEQVAA--VKRVKQCKD 110

Query:   290 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKR 349
             +Y  LG+SR  + D   LK+ YR+ A+  HPDKN     A EAFK +  AY VL +  KR
Sbjct:   111 YYEILGVSRGAS-DED-LKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKR 167

Query:   350 KAYD---DELRREELL-----DYFRRFQS-ASQKNGRHGFFGSGYARS 388
             K YD   D+  +         D+ R F++  S ++  + FFG G+  S
Sbjct:   168 KQYDQFGDDKSQAARHGHGHGDFHRGFEADISPEDLFNMFFGGGFPSS 215

GO:0016021 "integral to membrane" evidence=IEA

TIGR_CMR|APH_0015 APH_0015 "chaperone protein DnaJ" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 163 (62.4 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
 Identities = 33/69 (47%), Positives = 45/69 (65%)

Query:   285 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344
             +   D+Y  LG+SR  + +   +K+ YRKK    HPD+N GN++A E FKK+  AY+VL 
Sbjct:     1 MGSNDYYDLLGVSRGASEEE--IKKSYRKKVFEYHPDRNPGNKEAEEKFKKISEAYDVLT 58

Query:   345 DSFKRKAYD 353
             DS KR AYD
Sbjct:    59 DSDKRAAYD 67

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|Q58DR2 DNAJB12 "DnaJ homolog subfamily B member 12" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 58/168 (34%), Positives = 81/168 (48%)

Query:   230 QTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTD 289
             Q +G Q  P+ +       A   N    SA+   G  ST G  +E  +   V R+  C D
Sbjct:    55 QPAGDQPQPTEATHTTHRKAAGANTA--SANGEAGGESTKGYTAEQVAA--VKRVKQCKD 110

Query:   290 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKR 349
             +Y  LG+SR  + D   LK+ YRK A+  HPDKN     A EAFK +  AY VL +  KR
Sbjct:   111 YYEILGVSRGAS-DED-LKKAYRKLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKR 167

Query:   350 KAYD---DELRREELL-----DYFRRFQS-ASQKNGRHGFFGSGYARS 388
             K YD   D+  +         D+ R F++  S ++  + FFG G+  S
Sbjct:   168 KQYDQFGDDKGQAARHGHGHGDFHRGFEADISPEDLFNMFFGGGFPSS 215

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0037252 CG14650 [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 59/206 (28%), Positives = 87/206 (42%)

Query:   276 TSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKK 335
             T E+ +  LLNC    +   L    +     +++ Y+K A+LVHPDKN     A EAFK 
Sbjct:   693 TGEEAMYSLLNCKGKDAYSILGVPPDSSQEQIRKHYKKIAVLVHPDKNK-QAGAEEAFKV 751

Query:   336 LQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYAR-SEADCDD 394
             LQ A+E++ +   R  YD  +   E L   + +         H        + +EA    
Sbjct:   752 LQRAFELIGEPENRLIYDQSIA--ETLHTEKAWTEL------HDLLSQLQTKMAEA---- 799

Query:   395 PFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF 454
                 +  I C  C   H    T++   +AR C  C   H AKDGD W E S   L +   
Sbjct:   800 ----ANTIRCSTCAQRHPRKLTERPHYAARECASCKIRHSAKDGDIWAETSMMGLRWKYL 855

Query:   455 QKVDVPCAYVCANSRIYNATDWYICQ 480
               +D          ++Y+ T+W  CQ
Sbjct:   856 ALMD---------GKVYDITEWANCQ 872

GO:0009408 "response to heat" evidence=ISS

MGI|MGI:1931881 Dnajb12 "DnaJ (Hsp40) homolog, subfamily B, member 12" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 55/168 (32%), Positives = 79/168 (47%)

Query:   230 QTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTD 289
             Q++G    P+ +       A     P  + +   G  S  G  SE  +   V R+  C D
Sbjct:    55 QSTGDHPQPTDTTHTTTKKAGGTETPSANGEAGGG-ESAKGYTSEQVAA--VKRVKQCKD 111

Query:   290 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKR 349
             +Y  LG+SR  + D   LK+ YRK A+  HPDKN     A EAFK +  AY VL +  KR
Sbjct:   112 YYEILGVSRSAS-DED-LKKAYRKLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKR 168

Query:   350 KAYD---DELRREELL-----DYFRRFQS-ASQKNGRHGFFGSGYARS 388
             K YD   D+  +         D+ R F++  S ++  + FFG G+  S
Sbjct:   169 KQYDQFGDDKSQAARHGHSHGDFHRGFEADISPEDLFNMFFGGGFPSS 216

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1917854 Dnajb14 "DnaJ (Hsp40) homolog, subfamily B, member 14" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 51/153 (33%), Positives = 78/153 (50%)

Query:   232 SGMQAGPSFSNGEPVHPAFSD-NVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLN---C 287
             +G  AG S    +P  P  SD + P    D + G    +G+  ++ ++D+V  +L+   C
Sbjct:    53 NGSTAGSSTHCRKP--PGSSDQSKPSCGKDGTSG----AGEGGKVYTKDQVEGVLSINKC 106

Query:   288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
              ++Y  LG+++  +     LK+ YRK A+  HPDKN     A +AFKK+ NAY VL +  
Sbjct:   107 KNYYEVLGVTK--DAGDEDLKKAYRKLALKFHPDKNHA-PGATDAFKKIGNAYAVLSNPE 163

Query:   348 KRKAYDDELRREELLDYFRRFQSASQKNGRHGF 380
             KRK YD     E+  ++        Q NGR  F
Sbjct:   164 KRKQYDLTGSEEQACNH--------QNNGRFNF 188

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q87W07 hopI1 "Type III effector HopI1" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 160 (61.4 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 45/117 (38%), Positives = 61/117 (52%)

Query:   241 SNGEPVHPAFSDNVPGLSADR-SPGVPS-TSGDDSEMTSEDEVVRLLNCTDHYSALGLSR 298
             +N  P  P  ++  P    +R S   P+ TS  D+     D           Y  LGL+ 
Sbjct:   365 ANSAPPPPPKAE--PSAGGERPSTARPNNTSAADASARVGDSAPAKPPVKPLYEHLGLTD 422

Query:   299 FENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDD 354
               +VD+S +K+ YR  AM  HPDKN GNE +A E FK + NAY++L D   RKAYD+
Sbjct:   423 M-SVDLSAVKKAYRDAAMKNHPDKNRGNEAEAAERFKVISNAYKILSDPELRKAYDN 478

GO:0009405 "pathogenesis" evidence=ISS

WB|WBGene00001019 dnj-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 48/136 (35%), Positives = 71/136 (52%)

Query:   258 SADRSPGVPSTSGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAML 317
             SA R+P +    G D     ++ V R+ +C D+Y  L + +  + D   +++EYRK A+ 
Sbjct:   110 SASRTPKL----GVDYTSEQKELVERIRHCKDYYEILKIDKKASDDD--IRKEYRKLALK 163

Query:   318 VHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQKNGR 377
             +HPDK      A EAFK L NAY VL D+ KR+ YD +   E    +     +  ++ G 
Sbjct:   164 LHPDKCRAPH-ATEAFKALGNAYAVLSDTDKRRQYD-QYGAEAANSHT---PTTRRRGGG 218

Query:   378 HG-FFGSGYARS-EAD 391
             HG FF   YA   EA+
Sbjct:   219 HGAFFEHDYAHGFEAE 234

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1.27	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	588
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-22
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	7e-18
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-16
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-16
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-16
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	3e-14
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	3e-13
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-12
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	3e-12
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	4e-12
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	6e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	7e-12
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-11
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	3e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	6e-11
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	7e-11
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-10
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-10
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-10
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-09
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	4e-09
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-09
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	6e-09
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	8e-09
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-08
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-08
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-08
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	4e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-07
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-07
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-06
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	1e-06
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	4e-06
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	6e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-05
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	9e-05
pfam07698	189	pfam07698, 7TM-7TMR_HD, 7TM receptor with intracel	3e-04
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-04
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	0.003
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	0.003
cd00919	463	cd00919, Heme_Cu_Oxidase_I, Heme-copper oxidase su	0.003
pfam01148	259	pfam01148, CTP_transf_1, Cytidylyltransferase fami	0.004
COG1284	289	COG1284, COG1284, Uncharacterized conserved protei	0.004
pfam12822	168	pfam12822, DUF3816, Protein of unknown function (D	0.004

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 90.3 bits (225), Expect = 2e-22
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  +     +K+ YRK A+  HPDKN G+  A E FK++  AYEVL D  K
Sbjct: 1   DYYEILGVPR--DASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEK 58

Query: 349 RKAYD 353
           R  YD
Sbjct: 59  RAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 77.2 bits (191), Expect = 7e-18
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 345
           D+Y  LG+    +     +K+ YRK A+  HPDKN  + +A E FK++  AYEVL D
Sbjct: 1   DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 73.0 bits (180), Expect = 3e-16
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDS 346
           TD+Y  LG+ R  +  +  +K+ YRK A+  HPDKN G+ E+A E FK++  AYEVL D 
Sbjct: 1   TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58

Query: 347 FK 348
            K
Sbjct: 59  EK 60

Length = 60

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 80.0 bits (198), Expect = 4e-16
 Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 17/111 (15%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
            D+Y  LG+S+  +     +K+ YRK A   HPD+N G+++A E FK++  AYEVL D  
Sbjct: 4   RDYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61

Query: 348 KRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGE 398
           KR AYD             +F  A  K G  GF G G+     D  D F +
Sbjct: 62  KRAAYD-------------QFGHAGFKAG--GFGGFGFGGFGGDFGDIFED 97

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 79.8 bits (198), Expect = 4e-16
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 19/117 (16%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+SR  N     +K+ YRK AM  HPD+N G+++A E FK+++ AYEVL D  K
Sbjct: 5   DYYEVLGVSR--NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQK 62

Query: 349 RKAYDDELRREELLDYFRRF-QSASQKNGRHGFFGSGYARSEADCD---DPFGESRR 401
           R AYD             ++  +A ++ G  G FG G    +   D   D FG  R 
Sbjct: 63  RAAYD-------------QYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGRG 106

Length = 371

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D Y  LG+S   +     +K+ YRK A  +HPD N G+  A E FK +  A++VL D  K
Sbjct: 10  DFYKELGVS--SDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFG 397
           RK Y DE RR      F   +      G  G FG+G   +E + +D F 
Sbjct: 68  RKEY-DETRRLFAGGGFGGRRFDG--GGGFGGFGTGGDGAEFNLNDLFD 113

Length = 392

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 19/113 (16%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+  +     +K+ YRK A   HPD+N  +++A E FK++  AYEVL D  K
Sbjct: 1   DYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRN-KDKEAEEKFKEINEAYEVLSDPEK 57

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHG---FFGSGYARSEADCDDPFGE 398
           R  YD             +F  A    G  G    F         D  D FG+
Sbjct: 58  RAQYD-------------QFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGD 97

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+   VD   +K+ YRKKA+  HPDKN G+++A E FK+   AY+VL D  K
Sbjct: 6   DYYEVLGVSKTATVDE--IKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDK 63

Query: 349 RKAYD 353
           R  YD
Sbjct: 64  RSRYD 68

Length = 386

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+SR  + D   +K+ YRK A+  HPDKN  N++A E FK++  AYEVL +  K
Sbjct: 4   DYYEVLGVSRSADKDE--IKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 349 RKAYD 353
           R+ YD
Sbjct: 62  RRRYD 66

Length = 397

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)

Query: 289 DHYSALGLSRFENVDVSI--LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 346
           D+Y  LG++R    D S   +K+ YRK AM  HPD+N G+++A E FK+   AYEVL D 
Sbjct: 5   DYYEILGVTR----DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 347 FKRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPF 396
            KR  YD                    + G  G  G+G++   +  DD F
Sbjct: 61  KKRGIYD--------------------QYGHEGLSGTGFSGF-SGFDDIF 89

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 21/113 (18%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+SR  +     +K+ YRK A+  HPD+N  N +A + FK+   AYEVL D+ K
Sbjct: 5   DYYEVLGVSR--DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEK 62

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSE---ADCDDPFGE 398
           R  YD             RF  A      +G FG G++ +E   +   D FG+
Sbjct: 63  RARYD-------------RFGHAGV--NGNGGFG-GFSSAEDIFSHFSDIFGD 99

Length = 373

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 16/97 (16%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LGL +  + D   +K+ +RK A+  HPDKN GN++A E FK++  AY+VL D  K
Sbjct: 5   DYYEVLGLEKGASDDE--IKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQK 62

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGY 385
           +  YD             +F +A   NG  GF   G+
Sbjct: 63  KAQYD-------------QFGTAD-FNGAGGFGSGGF 85

Length = 380

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 15/102 (14%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
            D+Y+ LG+S+        +K+ YRK A+  HPDKN G+ +A + FK++  AYEVL D+ 
Sbjct: 1   MDYYTILGVSK--TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQ 58

Query: 348 KRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSE 389
           KR++YD             R+       G  GF G+G    E
Sbjct: 59  KRESYD-------------RYGKDGPFAGAGGFGGAGMGNME 87

Length = 391

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 31/129 (24%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  N     +K+ YR+ A   HPD N G+++A + FK++  AYE+L D  K
Sbjct: 6   DYYEILGVDR--NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQK 63

Query: 349 RKAYDDELRREELLDYFRRFQSAS---QKNGRHGFFGSGYARSEADCD------------ 393
           R  YD             +F  A+      G+ GF   G+     D D            
Sbjct: 64  RAQYD-------------QFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIF 110

Query: 394 -DPFGESRR 401
            D FG  RR
Sbjct: 111 GDFFGTGRR 119

Length = 386

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 63.9 bits (155), Expect = 6e-11
 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 290 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKR 349
           +Y  LG+S+  N +   +K  YRK A+  HPDKN GN+++ E FK+   AYE+L D  KR
Sbjct: 6   YYDILGVSKSANDEE--IKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63

Query: 350 KAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGE 398
           +AYD             +F  A    G  GF    Y     D  D FG+
Sbjct: 64  QAYD-------------QFGKAGVNAGAGGFGQGAY----TDFSDIFGD 95

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 63.9 bits (155), Expect = 7e-11
 Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 35/179 (19%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LGLS+  + D   +K+ YRK A+  HPDKN GN++A   FK+   AYEVL D  K
Sbjct: 4   DYYEILGLSKGASKDE--IKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61

Query: 349 RKAYDDELRREELLDYFRRF-QSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKC 407
           R  YD             RF  +A +  G    F  G++   +D  + FG+         
Sbjct: 62  RAQYD-------------RFGHTAFEGGGGFEGFSGGFS-GFSDIFEDFGDI-------- 99

Query: 408 NNFHVWIETKKSKASARWCQECNDYHQAKDGDGW-VEQSSEPLFFGIFQKVDVPCAYVC 465
             F  +    +        Q+ N  H+      + +E S E  + G    +++    +C
Sbjct: 100 --FDSFFTGNRG-------QDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLC 149

Length = 365

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ +        +K+ YRK A   HPD N G+ KA E FK++  AY+VL D  K
Sbjct: 10  DYYKVLGVPKDATEAE--IKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67

Query: 349 RKAYDD 354
           RK YD+
Sbjct: 68  RKEYDE 73

Length = 389

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
            D+Y  LG+SR  N   + +KR YRK A  +HPD N  +E+A E FK++  AYEVL D  
Sbjct: 3   RDYYGLLGVSR--NASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVLSDPE 59

Query: 348 KRKAYD 353
           KR+  D
Sbjct: 60  KRRIVD 65

Length = 378

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 60.2 bits (145), Expect = 3e-10
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKN-MGNEKAVEAFKKLQNAYEVLF 344
           +  D+Y  LG+         I K+ YRK A+  HPD+N    + A E FK++  AYE+L 
Sbjct: 4   DLLDYYEILGVPPNA-SLEEI-KKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILS 61

Query: 345 DSFKRKAYDDELRREELLDYFRRFQSASQKNGRHG 379
           D  +R  YD     +   D +   +S  +      
Sbjct: 62  DPERRAEYD-----KIGADNYFPGKSYRESAAFPI 91

Length = 237

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 285 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344
           +N T++Y  LG+S+  +     +K+ YRK +   HPD N     A E +K++Q AYE L 
Sbjct: 1   MNNTEYYDRLGVSK--DASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLS 57

Query: 345 DSFKRKAYD 353
           D  KR AYD
Sbjct: 58  DPQKRAAYD 66

Length = 380

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-AVEAFKKLQNAYEVLFDSF 347
           D+Y  LG+SR  N     +KR Y++     HPD++  N K A + FK++Q AYEVL D  
Sbjct: 5   DYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ 62

Query: 348 KRKAYD 353
           KR  YD
Sbjct: 63  KRAMYD 68

Length = 369

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  N D   +K+ YRK A   HPD +   E A E FK++  AY VL D  K
Sbjct: 6   DYYEVLGVDR--NADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEK 62

Query: 349 RKAYD 353
           R+ YD
Sbjct: 63  RQRYD 67

Length = 378

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+SR  + D   +K  YRK A+  HPD+N   + A E F ++  AY VL D+ K
Sbjct: 3   DYYELLGVSRTASADE--IKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEK 59

Query: 349 RKAYD 353
           R  YD
Sbjct: 60  RAHYD 64

Length = 371

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LGLS+  +  V  +K+ YRK AM  HPDKN     A E FK++  AY VL D+ K
Sbjct: 6   DYYEILGLSK--DASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEK 62

Query: 349 RKAYD 353
           R  YD
Sbjct: 63  RAQYD 67

Length = 377

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+SR  N     +K+ YR+ A   HPD N  N +A E FK++  AY+VL D  K
Sbjct: 4   DYYEILGVSR--NATQEEIKKAYRRLARKYHPDFN-KNPEAEEKFKEINEAYQVLSDPEK 60

Query: 349 RKAYD 353
           RK YD
Sbjct: 61  RKLYD 65

Length = 382

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+  + D   +K+ YRK +   HPD N   E A E FK++  AYEVL D  K
Sbjct: 5   DYYEVLGVSKSASKDE--IKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQK 61

Query: 349 RKAYD 353
           R  YD
Sbjct: 62  RAQYD 66

Length = 376

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPD--KNMGNEKAVEAFKKLQNAYEVLFDS 346
           D+Y  LG+SR  + D   LKR YR+ A   HPD  K  G E   + FK++  AYEVL D 
Sbjct: 4   DYYEILGVSR--DADKDELKRAYRRLARKYHPDVNKEPGAE---DRFKEINRAYEVLSDP 58

Query: 347 FKRKAYD 353
             R  YD
Sbjct: 59  ETRARYD 65

Length = 374

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350
           Y  L LS+  +   S +K+ YRK A+  HPDK    EK    FK++  AYEVL D  KRK
Sbjct: 31  YEVLNLSK--DCTTSEIKKAYRKLAIKHHPDKGGDPEK----FKEISRAYEVLSDPEKRK 84

Query: 351 AYDD 354
            YD+
Sbjct: 85  IYDE 88

Length = 421

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSF 347
           D+Y  LG+ R  N     +K+ +R+ A   HPD + GN+ +A E FK++  AYEVL D  
Sbjct: 4   DYYKILGVDR--NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQ 61

Query: 348 KRKAYDD 354
           KR+ YD 
Sbjct: 62  KRRQYDQ 68

Length = 365

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 290 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKR 349
           +Y  L + +  N +   +K+ YRK A+  HPD+N G+++A E FK +  AY VL D  KR
Sbjct: 5   YYEILEVEKHSNQET--IKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62

Query: 350 KAYD 353
             YD
Sbjct: 63  ALYD 66

Length = 369

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y+ LG+ +  N     +K+ ++K A   HPD N     A E FK++  AY VL D  K
Sbjct: 5   DYYAILGVPK--NASQDEIKKAFKKLARKYHPDVNKSPG-AEEKFKEINEAYTVLSDPEK 61

Query: 349 RKAYD 353
           R+ YD
Sbjct: 62  RRIYD 66

Length = 291

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 289 DHYSALGLSRFE-NVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKLQNAYEVLFD 345
           D Y+ LGLS++        + + ++KK    HPDK    GN+   E FK +Q A EVL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 346 SFKRKAYD 353
              R  YD
Sbjct: 104 RKLRLQYD 111

Length = 379

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  + D   +K+ +RK A   HPD+N   + A   F ++  A +VL +  K
Sbjct: 3   DYYEVLGIDR--DADEQEIKKAFRKLAKKYHPDRNKAPD-AASIFAEINEANDVLSNPKK 59

Query: 349 RKAYD----DELRREELLDY 364
           R  YD    D + RE+  D+
Sbjct: 60  RANYDKYGHDGVDREDDFDF 79

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 48.5 bits (115), Expect = 6e-06
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 16/110 (14%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+  +   + LK+ Y K A   HPD     + A + FK++  AY+VL D  K
Sbjct: 4   DYYQILGVSKTASQ--ADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQK 60

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGE 398
           R AYD         D F + Q +    G HG F         D +D FG+
Sbjct: 61  RAAYDRFGH-----DAF-QNQQSRGGGGNHGGFH-------PDINDIFGD 97

Length = 372

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  N  V  +K+ YRK A   HPD N     A + FK+++ AY+ L D  K
Sbjct: 5   DYYEVLGVDR--NASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQK 61

Query: 349 RKAYD 353
           +  YD
Sbjct: 62  KAHYD 66

Length = 371

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEA-FKKLQNAYEVLFDSF 347
           D+Y+ +G+   +  D+  +K  YR+ A   HPD  +  E   EA FK++  A+EVL D  
Sbjct: 5   DYYAIMGVKPTD--DLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSDEQ 60

Query: 348 KRKAYDDELRREELLDYFRRF--QSASQKNGRHGF 380
           +R  Y D+L +      F R       Q      F
Sbjct: 61  RRAEY-DQLWQHRNDPQFNRQFQHGDGQSFNAEDF 94

Length = 306

>gnl|CDD|219524 pfam07698, 7TM-7TMR_HD, 7TM receptor with intracellular HD hydrolase

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 64  LGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVV 123
           LG F  ++LLL +L L       +   R       S+I    L +  ++ +     ++ +
Sbjct: 5   LGLFLLVLLLLGVLLLYLRRFRPELRKRNKKLLLLSLILILSLLLAKLISLISIPYLVPL 64

Query: 124 AA---LVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVI-FLGGLAFKFTHERLALFI 179
           AA   L+A  +G  LALVV  L   +LL L       F +   LGGL         AL +
Sbjct: 65  AAAPMLLAILLGSRLALVVSVL-LALLLGLMFGNNLEFLLYALLGGLV-------GALSV 116

Query: 180 TTMYS---IYCAWTYVGWLGLLLALNLSFVSSDALIFF 214
             + S   +  A   V  + +LL L L  +   +  + 
Sbjct: 117 RRLRSRSQLLQAGLLVALVNVLLYLALGLIQGGSFSWL 154

These bacterial 7TM receptor proteins have an intracellular pfam01966. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain. Length = 189

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+        +++ YRK A   HPD N   + A +   ++  A +VL D  K
Sbjct: 5   DYYEVLGVSK--TASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEAADVLLDKDK 61

Query: 349 RKAYD 353
           RK YD
Sbjct: 62  RKQYD 66

Length = 372

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 66  HFAKIMLLLSMLWLDCTI-RGIDSFMRMGTTSFFSVIWCSIL-SVIAMVGMFKFLMVLVV 123
           H A +      L        G    + +G  + F  I      SV+  + M   L +L  
Sbjct: 248 HVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVM-LALALLAS 306

Query: 124 AALVAFFIGFALALVVVALSGTILLWLYG-SFWTTFFVIF--LGGLAFKFTHERLALFIT 180
            +L      F L L  +A+     L +    FW +F  +   +                 
Sbjct: 307 LSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGLSWPLPI 366

Query: 181 TMYSIYCAWT---------YVGWLGLLLALNLSFVSSDALIFFL 215
           T   +    T          +G LGLLL L +S + S   +  L
Sbjct: 367 T---LALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGL 407

Length = 453

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 23/70 (32%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLV---HPDK-----------NMGNEKAVEAF 333
            D Y  LG+S  E+ D   +KR YRK   L+   HPDK            M  EKA    
Sbjct: 200 EDAYKVLGVS--ESDDDQEIKRAYRK---LMSEHHPDKLVAKGLPPEMMEMAKEKA---- 250

Query: 334 KKLQNAYEVL 343
           +++Q AYE++
Sbjct: 251 QEIQAAYELI 260

Length = 267

>gnl|CDD|238461 cd00919, Heme_Cu_Oxidase_I, Heme-copper oxidase subunit I

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 104 SILSVIAMV---------GMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSF 154
           SIL  I  +         GM    M L V +++   I   LAL V+A    ++L L  +F
Sbjct: 145 SILGAINFITTILNMRAPGMTLDKMPLFVWSVLVTAILLLLALPVLAA-ALVMLLLDRNF 203

Query: 155 WTTFFVIFLGG 165
            T+FF    GG
Sbjct: 204 GTSFFDPAGGG 214

Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily. Length = 463

>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 97  FFSVIWCSILSVIAMVG-----MFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY 151
           F  +++   L  + +V          L+ L+     +  +     L ++     +LL   
Sbjct: 14  FLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRGLGLIFYLLGLLLVYG 73

Query: 152 GSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDAL 211
                 F ++ L           +  +     ++   + YVG    LL +   F      
Sbjct: 74  EGLLALFGLVLLVIPVLWLLVLPVLAYHRVSSTLLPLF-YVGLFLSLLLITNPFFGLLWA 132

Query: 212 IFFL 215
           +  +
Sbjct: 133 LLLI 136

The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108. Length = 259

>gnl|CDD|224203 COG1284, COG1284, Uncharacterized conserved protein [Function unknown]

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 105 ILSVIAMVGMFKFLMVLVVAALVA-----FFIGFALALV-VVALSGTILLWLYG--SFWT 156
           I S++ +    K L++++ A + A     F I  ALA   V  LS  ILL L+G   F  
Sbjct: 4   IKSILPLKKAKKLLIIIIGAGIYAFGLNLFLIPNALASGGVTGLS-LILLALFGIPPFGL 62

Query: 157 TFFV--IFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLL 198
           TFF+  I L  L +K     +    T + +I        +L L 
Sbjct: 63  TFFLLNIPLFILGYKK----IGKRFTLLSTIIGVLLLSLFLWLF 102

Length = 289

>gnl|CDD|221791 pfam12822, DUF3816, Protein of unknown function (DUF3816)

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 13/118 (11%)

Query: 104 SILSVIAMVGMF------KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTT 157
           ++LS +++V M+      K     +   L AF +G     ++  L+  +L +L       
Sbjct: 7   ALLSALSIVLMYIPFPPLKIDFSHIPVLLGAFLLGPVAGALIGLLTS-LLSFLLFGGGPF 65

Query: 158 FFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFL 215
             V  L             LF      IY           +LA+ L  +    +   L
Sbjct: 66  ALVGPLANFLP------RILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLL 117

This family of proteins is functionally uncharacterized but are likely to be membrane transporters. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 177 and 208 amino acids in length. A subset of this family is associated with the TM1506 proteins. In this context, transport through the channel is predicted to be regulated by the TM1506 protein by either regulating redox potential or modification of substrates. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	588
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	100.0
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.93
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.93
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.81
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.74
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK14299	291	chaperone protein DnaJ; Provisional	99.71
PF14901	94	Jiv90: Cleavage inducing molecular chaperone	99.69
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.68
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.63
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.61
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.59
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.58
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.57
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.55
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.5
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.47
PHA03102	153	Small T antigen; Reviewed	99.47
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.47
PRK05014	171	hscB co-chaperone HscB; Provisional	99.4
PRK01356	166	hscB co-chaperone HscB; Provisional	99.36
PRK03578	176	hscB co-chaperone HscB; Provisional	99.35
PRK00294	173	hscB co-chaperone HscB; Provisional	99.33
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.33
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.28
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.26
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.26
PTZ00100	116	DnaJ chaperone protein; Provisional	99.15
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.14
PHA02624	647	large T antigen; Provisional	99.08
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.05
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.91
PRK01773	173	hscB co-chaperone HscB; Provisional	98.85
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.82
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.71
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.21
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.08
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.71
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.23
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.1
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.83
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.42
KOG0431	453	consensus Auxilin-like protein and related protein	96.0
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.64
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.27
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	94.39
PRK14282	369	chaperone protein DnaJ; Provisional	93.85
KOG2813	406	consensus Predicted molecular chaperone, contains	93.6
KOG2813	406	consensus Predicted molecular chaperone, contains	93.38
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	93.25
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	92.81
PRK14279	392	chaperone protein DnaJ; Provisional	91.54
PRK14300	372	chaperone protein DnaJ; Provisional	91.1
PRK10767	371	chaperone protein DnaJ; Provisional	90.94
PRK14290	365	chaperone protein DnaJ; Provisional	90.57
PRK14301	373	chaperone protein DnaJ; Provisional	90.46
PRK14286	372	chaperone protein DnaJ; Provisional	90.22
PRK14288	369	chaperone protein DnaJ; Provisional	89.83
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	89.75
PRK14295	389	chaperone protein DnaJ; Provisional	89.71
PRK14294	366	chaperone protein DnaJ; Provisional	89.56
PTZ00037	421	DnaJ_C chaperone protein; Provisional	89.4
PRK14285	365	chaperone protein DnaJ; Provisional	89.38
PRK14291	382	chaperone protein DnaJ; Provisional	89.23
PRK14284	391	chaperone protein DnaJ; Provisional	89.15
PRK14296	372	chaperone protein DnaJ; Provisional	88.9
PRK14276	380	chaperone protein DnaJ; Provisional	88.87
PRK14277	386	chaperone protein DnaJ; Provisional	88.39
PRK14278	378	chaperone protein DnaJ; Provisional	88.33
PRK14298	377	chaperone protein DnaJ; Provisional	88.32
PRK14280	376	chaperone protein DnaJ; Provisional	87.76
PRK14281	397	chaperone protein DnaJ; Provisional	87.5
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	87.23
PRK14289	386	chaperone protein DnaJ; Provisional	87.15
PRK14283	378	chaperone protein DnaJ; Provisional	86.77
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	86.69
PRK14287	371	chaperone protein DnaJ; Provisional	86.67
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	86.39
PRK14293	374	chaperone protein DnaJ; Provisional	85.74
PRK14297	380	chaperone protein DnaJ; Provisional	85.63
PLN03165	111	chaperone protein dnaJ-related; Provisional	85.42
KOG0724	335	consensus Zuotin and related molecular chaperones	83.94
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	82.61
PRK14292	371	chaperone protein DnaJ; Provisional	80.09

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-74  Score=605.75  Aligned_cols=447  Identities=41%  Similarity=0.683  Sum_probs=356.9

Q ss_pred             HHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 007833           38 LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF  117 (588)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  117 (588)
                      ++...++.||.+..++...+|.+-   +++|++.|++ .+|+||++||||+++|+|++++|+||||+++|.+||.++.|+
T Consensus        11 ~~~~~~k~~~~~~~~~p~~~~~~~---~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~~s~~ql~~~   86 (490)
T KOG0720|consen   11 VKLRVYKGRDLVLTKMPLVFSVVF---MHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSANSMGQLTKF   86 (490)
T ss_pred             ecccccchhhhhhhcCCcccchhh---ccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeecccccccccc
Confidence            455677778776555444444443   7889998888 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhccccchhhHHHHHHHHHHHhhhhhhhhhhhH
Q 007833          118 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGL  197 (588)
Q Consensus       118 ~~~~~~~~~~~~~~g~~~~~~iv~~~~~~~~w~~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~~~~~gw~g~  197 (588)
                      ++.|+++.+++.|.|.++++.+++++|++++|+| +||.++.+-+-  .+|+++|+     +.+.|+.|.+.++.+|++.
T Consensus        87 ~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~s~kt~w~~  158 (490)
T KOG0720|consen   87 ILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSALSYKTWWGL  158 (490)
T ss_pred             ccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceeeeccchhhhh
Confidence            9999999999999999999999999999999999 99998887776  88999988     7788999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhhccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 007833          198 LLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTS  277 (588)
Q Consensus       198 ~l~~nlsfls~diL~~~l~~~~e~~~~ss~~e~~~~~~~~~~~~s~~ss~~sss~~~~s~ss~~~~~~~s~~~~~s~~ts  277 (588)
                      ++.+|+.++.-|...+|....+..+. -.          ++    .+....+..+.++++...+..+-....+.+.+.++
T Consensus       159 ~~k~l~~~i~l~f~~~f~~~~~~~~~-~~----------r~----l~~vk~~~~e~g~~tv~~~~~g~~~e~~va~n~t~  223 (490)
T KOG0720|consen  159 TLKLLRAVILLDFSIYFERNKIIQQT-AD----------RP----LEPVKDSGAEEGDETVESRDYGCKKEIPVATNATS  223 (490)
T ss_pred             cchhhhhhhhhhcceeeeeehhhHHH-Hh----------hh----cchhhhhccccCCCchhcCCcccccccccccchhh
Confidence            99999999988877777764444331 00          00    11112222233333333444444555555566666


Q ss_pred             -HHHHHHhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          278 -EDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       278 -~~e~~ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                       .+++.|+++..|+|++|||++  ++|.++|||.|||+|...|||||. .|.|+|+||.|+.|||+|+|++||+.||..+
T Consensus       224 ~adrl~re~~~~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  224 FADRLSRELNILDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             HHHhhhhhhcCCCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence             689999999999999999999  999999999999999999999998 6999999999999999999999999999987


Q ss_pred             hhhhhh-hhhhhccccccCCCCccccCCCCCCCCCCCCCCCCcccccccccccCccceeeeccCcccccccccccccccc
Q 007833          357 RREELL-DYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA  435 (588)
Q Consensus       357 ~~~~~~-~~F~~F~~~~~~~g~~Gffgggf~rsr~~dE~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~a  435 (588)
                      .+++.. ..+..+-...+.                ..|+   ..++|.|++|.++|+|++|.+++..+|+|++|+.+|||
T Consensus       301 ~kene~~~~~~~~~~~~~~----------------~~eE---A~ntI~CskC~n~H~r~~T~rs~s~AR~C~~C~~~H~A  361 (490)
T KOG0720|consen  301 KKENELHRQVISSLNDLQK----------------AVEE---ARNTIFCSKCGNTHFRVLTSRSPSQARWCAECGVKHPA  361 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH----------------HHHH---HHhheehhhhcCcceeeeecCChhhhHHHHHhCccCcc
Confidence            665432 111111111110                1111   27889999999999999999999999999999999999


Q ss_pred             cCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCcccCCCC-ccccCCCCCC
Q 007833          436 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHN-TSKGTSSGQR  514 (588)
Q Consensus       436 k~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~~~-r~~g~g~~~~  514 (588)
                      |||+-|+|..+-    |+     ++-+|+|+++++||+++|++|||+++.+++|++++||.+|-.-.+. +.++....|.
T Consensus       362 Kdgdiw~Ek~hl----gl-----~~tyy~c~DgkVYDITeWA~CQ~~~~~pntHr~~~Hi~~~~~~~~tq~s~~~~~~q~  432 (490)
T KOG0720|consen  362 KDGDIWAEKSHL----GL-----TPTYYACMDGKVYDITEWAICQGMACSPNTHRVSYHINFGALISGTQRSRQQAQPQA  432 (490)
T ss_pred             ccCCEeeeehhc----cc-----cceeeeecCCceEeehhhhhccccccCCCccCcchhhhhhhhcCcccccchhccccc
Confidence            999999998532    22     3556799999999999999999999999999999999988754422 3322222222


Q ss_pred             CCCCCCCccccCCChhHHHHHHHHHHHhccccc
Q 007833          515 GGRMPPPNLEETMTEDEFLEWLQNAVQAGLFDN  547 (588)
Q Consensus       515 gg~~p~~~~~~~~~e~e~~~wl~~~~~~~~f~~  547 (588)
                         .|.+..++  +|+||++|+||+.+||+|++
T Consensus       433 ---~~~~~pd~--~~~~f~~~~~q~~~s~~f~~  460 (490)
T KOG0720|consen  433 ---PPADYPDE--LEREFQLPLGQAPNSGLFAA  460 (490)
T ss_pred             ---CcccCcch--hhhhhccCCccccccchhcc
Confidence               22333333  88999999999999999999

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-48  Score=407.11  Aligned_cols=233  Identities=25%  Similarity=0.390  Sum_probs=178.5

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhhhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR  366 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~~~F~  366 (588)
                      .+|||+||||++  +||++||||||||||++||||+|+++++|+|+||+|++||||||||+||+.||+++........|.
T Consensus         3 ~~dyYeiLGV~k--~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           3 KRDYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             ccchhhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            479999999999  999999999999999999999999889999999999999999999999999999876432111111


Q ss_pred             hccccccCCC-----CccccCCCCC-------CCCCCC----------------CCCCCcccccccccccCccceeeecc
Q 007833          367 RFQSASQKNG-----RHGFFGSGYA-------RSEADC----------------DDPFGESRRIACKKCNNFHVWIETKK  418 (588)
Q Consensus       367 ~F~~~~~~~g-----~~Gffgggf~-------rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k  418 (588)
                      .+ +...+++     +..+|+++.+       +.++.|                +..+.+++.+.|+.|+|+|     ++
T Consensus        81 g~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsG-----ak  154 (371)
T COG0484          81 GF-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSG-----AK  154 (371)
T ss_pred             CC-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCC-----CC
Confidence            11 0000000     0112322211       112221                3457789999999999998     88


Q ss_pred             CcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCc
Q 007833          419 SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTS  498 (588)
Q Consensus       419 ~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~G  498 (588)
                      +++.+.+|++|+       |+|++++..+ +  |+ ++++++|+ .|.|+|..++++|..|+|.|++.+.+.++|+||+|
T Consensus       155 ~gt~~~tC~tC~-------G~G~v~~~~~-~--g~-~~~~~~C~-~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaG  222 (371)
T COG0484         155 PGTDPKTCPTCN-------GSGQVRTVQR-T--GF-FSFQQTCP-TCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAG  222 (371)
T ss_pred             CCCCCCcCCCCC-------CcCeEEEEEe-e--eE-EEEEEECC-CCccceeECCCCCCCCCCCCeEeeeeEEEEECCCC
Confidence            888999999999       9999887543 3  34 56788999 99999999999999999999999999999999999


Q ss_pred             ccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHH
Q 007833          499 VTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAV  540 (588)
Q Consensus       499 v~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~  540 (588)
                      |.+++ .+..|.|+++.+| +|++||++.+  .+|++|+..-++|
T Consensus       223 v~~g~~ir~~g~G~~g~~G-gp~GDLyv~i~v~~h~~F~R~g~dL  266 (371)
T COG0484         223 VDDGDRIRLSGEGEAGPNG-GPAGDLYVFVHVKPHPIFERDGDDL  266 (371)
T ss_pred             CccCCEEEEecCcccCCCC-CCCccEEEEEEeecCCCeEECCCce
Confidence            97773 3555555555434 5666777766  8888888765443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-39  Score=345.67  Aligned_cols=229  Identities=21%  Similarity=0.311  Sum_probs=170.4

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhh----
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL----  362 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~----  362 (588)
                      .+|||+||||++  +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+|||||+||+.||+++... ..    
T Consensus         3 ~~dyY~~Lgv~~--~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~-~~~~~~   78 (372)
T PRK14296          3 KKDYYEVLGVSK--TASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA-FDGSSG   78 (372)
T ss_pred             CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh-hcCCCC
Confidence            479999999999  899999999999999999999997 4889999999999999999999999999986421 00    


Q ss_pred             -----hhhhhccccc---cCCC----CccccCCCCC----CCCCCC----------------CCCCCcccccccccccCc
Q 007833          363 -----DYFRRFQSAS---QKNG----RHGFFGSGYA----RSEADC----------------DDPFGESRRIACKKCNNF  410 (588)
Q Consensus       363 -----~~F~~F~~~~---~~~g----~~Gffgggf~----rsr~~d----------------E~~~~isr~v~C~kC~Gs  410 (588)
                           ..|..++...   ....    +..+|+++.+    +.++.+                +..+.+.+.+.|+.|+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~  158 (372)
T PRK14296         79 FSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGS  158 (372)
T ss_pred             cCcCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCC
Confidence                 0011100000   0000    1122332211    112221                124556888999999999


Q ss_pred             cceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeE
Q 007833          411 HVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHK  490 (588)
Q Consensus       411 G~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~  490 (588)
                      |     .........|+.|+       |+|.+.... ++++ +.++.+++|+ .|.|.|.....+|..|+|.|++.+.+.
T Consensus       159 G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~g~-~~~q~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~  223 (372)
T PRK14296        159 G-----AESNSDIHICNNCH-------GTGEVLVQK-NMGF-FQFQQSAKCN-VCNGAGKIIKNKCKNCKGKGKYLERKK  223 (372)
T ss_pred             c-----cCCCCCCccCCCCC-------CCceEEEEE-eccc-eEEEEEecCC-CcCCcceeecccccCCCCceEEEEEEE
Confidence            8     66677788999999       999887754 4566 4457888999 999999999999999999999999999


Q ss_pred             EEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833          491 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW  535 (588)
Q Consensus       491 v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w  535 (588)
                      ++|+||+|+.++ ..+.+|.|.....++.| +|++..+  .+|++|.+
T Consensus       224 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~-GDL~v~v~v~~h~~F~R  270 (372)
T PRK14296        224 IEVNIPKGIRPNQQIKLSQKGHASLNNGVN-GDLIIDIYLKESKVFEI  270 (372)
T ss_pred             EEEEECCCCCCCCEEEEeccccCCCCCCCC-ccEEEEEEEeCCCCEEE
Confidence            999999999888 44666666654433334 4555544  77888887

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.7e-39  Score=341.15  Aligned_cols=232  Identities=25%  Similarity=0.371  Sum_probs=171.4

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh----
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL----  361 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~----  361 (588)
                      .+|||+||||++  +||.+|||+|||+||++||||+|+++ +.|+++|++|++||++|+||++|+.||+++.....    
T Consensus         3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~   80 (369)
T PRK14282          3 KKDYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ   80 (369)
T ss_pred             CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc
Confidence            479999999999  99999999999999999999999864 67899999999999999999999999997642100    


Q ss_pred             ---------hhhhhhccccccCCCCccccCCC-------CCCCCCCC----------------CCCCCcccccccccccC
Q 007833          362 ---------LDYFRRFQSASQKNGRHGFFGSG-------YARSEADC----------------DDPFGESRRIACKKCNN  409 (588)
Q Consensus       362 ---------~~~F~~F~~~~~~~g~~Gffggg-------f~rsr~~d----------------E~~~~isr~v~C~kC~G  409 (588)
                               .++|..|.......-+..+|+++       ..+.++.+                +..+.+.+.+.|+.|+|
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G  160 (369)
T PRK14282         81 ETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGG  160 (369)
T ss_pred             cCCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCc
Confidence                     00011110000000011122211       00112222                12456788999999999


Q ss_pred             ccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecccee
Q 007833          410 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTH  489 (588)
Q Consensus       410 sG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~  489 (588)
                      +|     .+.......|+.|+       |+|++.. .+++++|++|+ +++|+ .|.|.|....++|..|+|.+++.+.+
T Consensus       161 ~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~  225 (369)
T PRK14282        161 TG-----VEPGSGYVTCPKCH-------GTGRIRE-ERRSFFGVFVS-ERTCE-RCGGTGKIPGEYCHECGGSGRIRRRV  225 (369)
T ss_pred             cC-----CCCCCCCcCCCCCC-------CcCEEEE-EEEccCcceEE-EEECC-CCCCcceeCCCCCCCCCCceeEEEEE
Confidence            98     66666788999999       9998877 45678899775 66999 99999999999999999999999999


Q ss_pred             EEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          490 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      .++|+||+|+.++ ..+.+|.|..+..+ .+++|++..+  .+|++|.+-
T Consensus       226 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~i~i~v~~h~~F~r~  274 (369)
T PRK14282        226 RTTVKIPAGVEDGTVLRITGGGNAGYYG-GPYGDLYVIVRVRPDPRFKRS  274 (369)
T ss_pred             EEEEEeCCCCCCCCEEEEecccCCCCCC-CCCCCEEEEEEEecCCcEEEe
Confidence            9999999999888 44666666654434 3445555545  788888863

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-38  Score=338.67  Aligned_cols=222  Identities=23%  Similarity=0.360  Sum_probs=162.5

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-h------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-E------  360 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~------  360 (588)
                      .|||+||||++  +||.+|||||||+||++||||+|+++++|+++|++|++|||||+||+||+.||+++... +      
T Consensus         3 ~dyY~vLgv~~--~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~   80 (369)
T PRK14288          3 LSYYEILEVEK--HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQ   80 (369)
T ss_pred             CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCc
Confidence            69999999999  99999999999999999999999877889999999999999999999999999986421 0      


Q ss_pred             --hhhhhh---hccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeeccC
Q 007833          361 --LLDYFR---RFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKS  419 (588)
Q Consensus       361 --~~~~F~---~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k~  419 (588)
                        ..++|.   +|++..  .++.+..+....+.++.+                +..+.+.+.+.|+.|+|+|     .+.
T Consensus        81 ~~~~~~f~~~~~~F~~~--fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G-----~~~  153 (369)
T PRK14288         81 SDFSDFFEDLGSFFEDA--FGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG-----AKD  153 (369)
T ss_pred             cccccchhhHHHHHHhh--cCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcc-----cCC
Confidence              001111   111100  000000000001112221                1234567889999999998     444


Q ss_pred             cccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCcc
Q 007833          420 KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSV  499 (588)
Q Consensus       420 ~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv  499 (588)
                      . ....|+.|+       |+|.++...     |++| ++++|+ .|.|.|.....+|..|+|.|++.+.+.++|+||+|+
T Consensus       154 ~-~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~  218 (369)
T PRK14288        154 K-ALETCKQCN-------GQGQVFMRQ-----GFMS-FAQTCG-ACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGI  218 (369)
T ss_pred             C-CCcCCCCCC-------CCcEEEEEe-----ceEE-EEEecC-CCCCCceEccccCccCCCcceEEEEEEEEEecCCCC
Confidence            3 678999999       999886632     4554 556999 999999999999999999999999999999999999


Q ss_pred             cCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833          500 TSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW  535 (588)
Q Consensus       500 ~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w  535 (588)
                      .+++ .+.+|.|....+  ++++|++..+  .+|+.|.+
T Consensus       219 ~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~h~~f~R  255 (369)
T PRK14288        219 DDQNRMVLKNKGNEYEK--GKRGDLYLEARVKEDEHFKR  255 (369)
T ss_pred             CCCCEEEEccCccCCCC--CCCCCEEEEEEEEECCCcEE
Confidence            8884 355555555333  3455555555  77888876

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.7e-38  Score=336.93  Aligned_cols=226  Identities=25%  Similarity=0.415  Sum_probs=169.5

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------  359 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------  359 (588)
                      ..|||+||||++  +||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+++...       
T Consensus         3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~   80 (372)
T PRK14286          3 ERSYYDILGVSK--SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG   80 (372)
T ss_pred             CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCC
Confidence            369999999999  99999999999999999999999877889999999999999999999999999976421       


Q ss_pred             --------------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccC
Q 007833          360 --------------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNN  409 (588)
Q Consensus       360 --------------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~G  409 (588)
                                    ++.++|++|++... .+.. ..+....+.++.+                ++.+.+.+.+.|+.|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~d~f~~ffgg~~-~~~~-~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G  158 (372)
T PRK14286         81 FGQGAYTDFSDIFGDFGDIFGDFFGGGR-GGGS-GGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNG  158 (372)
T ss_pred             CCCCCcccccccccchhhHHHHhhCCCc-cCCC-cccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcC
Confidence                          01123333332100 0000 0000001112222                23456788999999999


Q ss_pred             ccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecccee
Q 007833          410 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTH  489 (588)
Q Consensus       410 sG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~  489 (588)
                      +|     .+.......|+.|+       |+|.+....     |++| ++++|+ .|.|.|.....+|..|+|.|++.+.+
T Consensus       159 ~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~~  219 (372)
T PRK14286        159 SG-----ASKGSSPTTCPDCG-------GSGQIRRTQ-----GFFS-VATTCP-TCRGKGTVISNPCKTCGGQGLQEKRR  219 (372)
T ss_pred             CC-----cCCCCCCccCCCCc-------CeEEEEEEe-----ceEE-EEEeCC-CCCceeeEecccCCCCCCCcEEecce
Confidence            98     66666778999999       999886632     5665 677999 89999999999999999999999999


Q ss_pred             EEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          490 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      .++|+||+|+.++ ..+.+|.|.....++ +++|++..+  .+|+.|.+-
T Consensus       220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~i~i~v~~h~~F~R~  268 (372)
T PRK14286        220 TINIKIPPGVETGSRLKVSGEGEAGPNGG-PHGDLYVVTHIKKHELFERQ  268 (372)
T ss_pred             EEEEEECCCCCCCCEEEECCccccCCCCC-CCceEEEEEEEccCCCEEEe
Confidence            9999999999888 446666666554443 445555555  788888773

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.7e-38  Score=336.79  Aligned_cols=226  Identities=24%  Similarity=0.377  Sum_probs=172.7

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------  359 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------  359 (588)
                      ..|||+||||++  +||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||+||+.||+++...       
T Consensus         3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~   79 (371)
T PRK14287          3 KRDYYEVLGVDR--NASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG   79 (371)
T ss_pred             CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC
Confidence            369999999999  999999999999999999999997 4789999999999999999999999999986421       


Q ss_pred             -------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeee
Q 007833          360 -------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET  416 (588)
Q Consensus       360 -------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t  416 (588)
                             ++.++|+.|+++.    + + ......+.++.+                +..+.+.+.+.|+.|+|+|     
T Consensus        80 ~~~~~f~~~~d~f~~~fgg~----~-~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G-----  148 (371)
T PRK14287         80 GGAGDFGGFSDIFDMFFGGG----G-G-RRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSG-----  148 (371)
T ss_pred             CCCccccchHHHHHhhhccc----c-C-CCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcc-----
Confidence                   0113344433210    0 0 000001112221                1245678899999999998     


Q ss_pred             ccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeC
Q 007833          417 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN  496 (588)
Q Consensus       417 ~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp  496 (588)
                      .+....+..|+.|+       |+|++.+ .+++++|++++ +++|+ .|.|.|....++|+.|.|.+.+.+.+.++|+||
T Consensus       149 ~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip  218 (371)
T PRK14287        149 AKPGTKPETCSHCG-------GSGQLNV-EQNTPFGRVVN-RRVCH-HCEGTGKIIKQKCATCGGKGKVRKRKKINVKVP  218 (371)
T ss_pred             cCCCCCCcccCCCC-------CEEEEEE-EEecCCceEEE-EEeCC-CCCCCCccccccCCCCCCeeEEeeeEEEEEEEC
Confidence            56666778999999       9998876 45678899876 67999 899999999999999999999999999999999


Q ss_pred             CcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHH
Q 007833          497 TSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQ  537 (588)
Q Consensus       497 ~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~  537 (588)
                      +|+.++ ..+.+|.|....+++ +++|++..+  .+|+.|.+--
T Consensus       219 ~G~~~G~~i~~~G~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~G  261 (371)
T PRK14287        219 AGIDHGQQLRVSGQGEAGVNGG-PPGDLYVVFNVKPHEFFERDG  261 (371)
T ss_pred             CcCCCCCEEEEccCCcCCCCCC-CCccEEEEEEEecCCCEEEec
Confidence            999888 446666666554343 344555544  7788887643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.7e-38  Score=334.46  Aligned_cols=225  Identities=25%  Similarity=0.342  Sum_probs=170.8

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh-------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE-------  360 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~-------  360 (588)
                      +|||+||||++  +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||++|+.||+++....       
T Consensus         3 ~d~y~iLgv~~--~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~   79 (378)
T PRK14278          3 RDYYGLLGVSR--NASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGG   79 (378)
T ss_pred             CCcceecCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCC
Confidence            69999999999  899999999999999999999997 58899999999999999999999999999764200       


Q ss_pred             --------hhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeee
Q 007833          361 --------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET  416 (588)
Q Consensus       361 --------~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t  416 (588)
                              +.++|++|+++.   + .+ .+....+.++.+                +..+.+.+.+.|+.|+|+|     
T Consensus        80 g~~~~f~~~~d~f~~ffgg~---g-~~-~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G-----  149 (378)
T PRK14278         80 GFGGGFGGLGDVFEAFFGGG---A-AS-RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKG-----  149 (378)
T ss_pred             CCCcCcCchhHHHHHHhCCC---C-CC-CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCcc-----
Confidence                    012233333210   0 00 000001112221                1245678899999999998     


Q ss_pred             ccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeC
Q 007833          417 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN  496 (588)
Q Consensus       417 ~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp  496 (588)
                      .+.+.....|+.|+       |+|.+... ++.++|++|+ +++|+ .|.|.|.....+|..|.|.|++.+.+.++|+||
T Consensus       150 ~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  219 (378)
T PRK14278        150 TAGDSKPVTCDTCG-------GRGEVQTV-QRSFLGQVMT-SRPCP-TCRGVGEVIPDPCHECAGDGRVRARREITVKIP  219 (378)
T ss_pred             CCCCCCceecCCcc-------CceEEEEE-EeccceeEEE-EEECC-CCCccceeeCCCCCCCCCceeEecceEEEEEEC
Confidence            66677788999999       99988774 4567788765 56899 899999999999999999999999999999999


Q ss_pred             CcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          497 TSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       497 ~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      +|+.++ ..+.+|.|..+.++ .|++|++..+  .+|+.|.+-
T Consensus       220 ~G~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~~~~h~~F~R~  261 (378)
T PRK14278        220 AGVGDGMRIRLAAQGEVGPGG-GPAGDLYVEVHEQPHDVFVRD  261 (378)
T ss_pred             CCCCCCcEEEEccCcCCCCCC-CCCCCEEEEEEECcCCCEEEc
Confidence            999888 44666666655444 3444555555  778888763

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.3e-38  Score=337.34  Aligned_cols=228  Identities=25%  Similarity=0.421  Sum_probs=167.7

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh---hhhh-
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR---EELL-  362 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~---~~~~-  362 (588)
                      .+|||+||||++  +|+.+|||+|||+||++||||+|++++.|+++|++|++||+|||||+||+.||+++..   +... 
T Consensus         8 ~~Dyy~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~   85 (392)
T PRK14279          8 EKDFYKELGVSS--DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGG   85 (392)
T ss_pred             ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccc
Confidence            379999999999  9999999999999999999999987789999999999999999999999999998631   0000 


Q ss_pred             ---------hh-----------hhhccccccCC---C----CccccCCCC------CCCCCCC----------------C
Q 007833          363 ---------DY-----------FRRFQSASQKN---G----RHGFFGSGY------ARSEADC----------------D  393 (588)
Q Consensus       363 ---------~~-----------F~~F~~~~~~~---g----~~Gffgggf------~rsr~~d----------------E  393 (588)
                               ..           |.++++....+   +    +.++|+++.      .+.++.+                +
T Consensus        86 ~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~  165 (392)
T PRK14279         86 RRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT  165 (392)
T ss_pred             ccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence                     00           11111100000   0    011222111      0112221                1


Q ss_pred             CCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC
Q 007833          394 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA  473 (588)
Q Consensus       394 ~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~  473 (588)
                      +.+.+.+.+.|+.|+|+|     .+.......|+.|+       |+|++....     |++ +++++|+ .|.|.|..+.
T Consensus       166 ~~v~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~-~~~~~C~-~C~G~G~~i~  226 (392)
T PRK14279        166 MPLRLTSPAPCTTCHGSG-----ARPGTSPKVCPTCN-------GSGVISRNQ-----GAF-GFSEPCT-DCRGTGSIIE  226 (392)
T ss_pred             EEEeeeccccCCCCcccc-----ccCCCCCCCCCCCc-------ceEEEEEEe-----cce-EEEEecC-CCCceeEEeC
Confidence            245678899999999998     66666789999999       999886632     344 3568999 8999999999


Q ss_pred             cccccCCCceeccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          474 TDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       474 ~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      .+|..|.|.|++.+++.++|+||+|+.++ ..+.+|.|.....++ |++|++..+  .+|++|.+-
T Consensus       227 ~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~i~i~v~~h~~F~R~  291 (392)
T PRK14279        227 DPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGA-PSGDLYVTVHVRPDKVFGRD  291 (392)
T ss_pred             CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCC-CCCCEEEEEEEecCCcceee
Confidence            99999999999999999999999999888 446666666544343 334555544  888888864

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.7e-38  Score=334.28  Aligned_cols=226  Identities=25%  Similarity=0.398  Sum_probs=167.5

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhhh--hh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLD--YF  365 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~~--~F  365 (588)
                      +|||+||||++  +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||++|+.||+++... +..  .+
T Consensus         3 ~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~-~~~~~~~   79 (365)
T PRK14285          3 RDYYEILGLSK--GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA-FEGGGGF   79 (365)
T ss_pred             CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch-hccCCCc
Confidence            69999999999  99999999999999999999999877889999999999999999999999999976421 000  00


Q ss_pred             hhcccccc-----CCC----CccccCCCC------CCCCCCC----------------CCCCCcccccccccccCcccee
Q 007833          366 RRFQSASQ-----KNG----RHGFFGSGY------ARSEADC----------------DDPFGESRRIACKKCNNFHVWI  414 (588)
Q Consensus       366 ~~F~~~~~-----~~g----~~Gffgggf------~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~  414 (588)
                      ..|.+...     ...    +..+|+++.      .+.++.+                ++.+.+++.+.|+.|+|+|   
T Consensus        80 ~~~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G---  156 (365)
T PRK14285         80 EGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKK---  156 (365)
T ss_pred             cccCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcc---
Confidence            00000000     000    011222110      0112221                1245678899999999998   


Q ss_pred             eeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEE
Q 007833          415 ETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFH  494 (588)
Q Consensus       415 ~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~  494 (588)
                        ...+.....|+.|+       |+|++..     .+|++ +++++|+ .|.|.|....++|..|+|.|++.+++.++|+
T Consensus       157 --~~~~~~~~~C~~C~-------G~G~~~~-----~~G~~-~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~  220 (365)
T PRK14285        157 --SEKGTSPSICNMCN-------GSGRVMQ-----GGGFF-RVTTTCP-KCYGNGKIISNPCKSCKGKGSLKKKETIELK  220 (365)
T ss_pred             --cCCCCCCccCCCcc-------CceeEEe-----cCcee-EEeeecC-CCCCcccccCCCCCCCCCCCEEeccEEEEEE
Confidence              66667788999999       9997764     34776 5789999 9999999999999999999999999999999


Q ss_pred             eCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          495 VNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       495 Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      ||+|+.++ ..+.+|.|....+++.|+ |++..+  .+|++|.+-
T Consensus       221 Ip~G~~~G~~i~~~g~G~~~~~~~~~G-DL~v~i~v~~h~~f~R~  264 (365)
T PRK14285        221 IPAGIDDNQQIKMRGKGSVNPDNQQYG-DLYIKILIKPHKIFKRN  264 (365)
T ss_pred             ECCCCCCCCEEEEeeccccCCCCCCCC-CEEEEEEEecCCCeEEe
Confidence            99999988 457777776655443344 444444  777777653

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=7.5e-38  Score=337.73  Aligned_cols=224  Identities=23%  Similarity=0.358  Sum_probs=169.4

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--------  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~--------  359 (588)
                      +|||+||||++  +||.+|||||||+||++||||||++    .++|++|++||+||+||+||+.||+++...        
T Consensus        28 ~d~Y~vLGV~~--~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~  101 (421)
T PTZ00037         28 EKLYEVLNLSK--DCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA  101 (421)
T ss_pred             hhHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCc
Confidence            79999999999  9999999999999999999999952    489999999999999999999999976421        


Q ss_pred             hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeeccCcccc
Q 007833          360 ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASA  423 (588)
Q Consensus       360 ~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k~~~~a  423 (588)
                      +..++|..|++..    .     ....+.++.+                ++.+.+.+.+.|+.|+|+|     .. ....
T Consensus       102 d~~d~f~~~Fggg----~-----~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G-----~~-~~~~  166 (421)
T PTZ00037        102 DASDLFDLIFGGG----R-----KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHG-----GP-KDAF  166 (421)
T ss_pred             chhhhHHHhhccc----c-----ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCC-----CC-CCCC
Confidence            1223444443310    0     0001112221                2345678899999999997     33 3467


Q ss_pred             cccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec--CcccccCCCceeccceeEEEEEeCCcccC
Q 007833          424 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN--ATDWYICQGMRCPANTHKPSFHVNTSVTS  501 (588)
Q Consensus       424 r~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~--~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d  501 (588)
                      ..|+.|+       |+|.+... +++++ |+|+++++|+ .|.|.|...  .++|..|+|.|++.+.+.++|+||+|+.+
T Consensus       167 ~~C~~C~-------G~G~~~~~-~~~g~-~~~q~~~~C~-~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~d  236 (421)
T PTZ00037        167 VDCKLCN-------GQGIRVQI-RQMGS-MIHQTQSTCN-SCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPN  236 (421)
T ss_pred             ccCCCCC-------CCCeEEEE-Eeecc-eeeEEEEeCC-CCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCC
Confidence            8999999       99976553 34555 7788999999 999999775  48999999999999999999999999988


Q ss_pred             CC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhcc
Q 007833          502 KH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAGL  544 (588)
Q Consensus       502 ~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~~  544 (588)
                      ++ .+..|.|+...  +.+++|++..+  .+|++|.+            |.+|+-.+-
T Consensus       237 G~~I~~~G~Gd~~~--~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~  292 (421)
T PTZ00037        237 QHKITFHGEADEKP--NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFV  292 (421)
T ss_pred             CcEEEEecccCCCC--CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCE
Confidence            84 35555555433  34455666655  78888887            466765554

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5e-38  Score=335.64  Aligned_cols=232  Identities=26%  Similarity=0.416  Sum_probs=172.3

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhhhh--
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDY--  364 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~~~--  364 (588)
                      ..|||+||||++  +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||+.||+++... +...  
T Consensus         3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~-~~~~~~   78 (380)
T PRK14276          3 NTEYYDRLGVSK--DASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG-ANGGFG   78 (380)
T ss_pred             CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc-ccCCCC
Confidence            369999999999  999999999999999999999997 4789999999999999999999999999976421 0000  


Q ss_pred             -----hhhccccccCCC----CccccCCC------CCCCCCCC----------------CCCCCcccccccccccCccce
Q 007833          365 -----FRRFQSASQKNG----RHGFFGSG------YARSEADC----------------DDPFGESRRIACKKCNNFHVW  413 (588)
Q Consensus       365 -----F~~F~~~~~~~g----~~Gffggg------f~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~  413 (588)
                           +..|........    +..+|+++      ..+.++.+                +..+.+.+.+.|+.|+|+|  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G--  156 (380)
T PRK14276         79 GGAGGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSG--  156 (380)
T ss_pred             CCCCCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcc--
Confidence                 000000000000    01122211      01112221                1245678899999999998  


Q ss_pred             eeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEE
Q 007833          414 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSF  493 (588)
Q Consensus       414 ~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V  493 (588)
                         .+.+.....|+.|+       |+|.+... +++++|++|+ +++|+ .|.|.|.....+|..|+|.|++.+.+.++|
T Consensus       157 ---~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V  223 (380)
T PRK14276        157 ---AKPGTSPVTCGKCH-------GSGVITVD-TQTPLGMMRR-QVTCD-VCHGTGKEIKEPCQTCHGTGHEKQAHTVSV  223 (380)
T ss_pred             ---cCCCCCCccCCCCC-------CeeEEEEE-EecCCceEEE-EEECC-CCCCCCccccCCCCCCCCceEEEEEEEEEE
Confidence               66666788999999       99988774 5678899876 77999 899999999999999999999999999999


Q ss_pred             EeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHH
Q 007833          494 HVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQN  538 (588)
Q Consensus       494 ~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~  538 (588)
                      +||+|+.++ ..+.+|.|....+++ +++|++..+  .+|+.|.+--+
T Consensus       224 ~Ip~G~~~G~~i~l~G~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~G~  270 (380)
T PRK14276        224 KIPAGVETGQQIRLQGQGEAGFNGG-PYGDLYVVFRVEPSKKFERDGS  270 (380)
T ss_pred             EeCCCccCCcEEEEeccccCCCCCC-CCcCEEEEEEEEECcceeeecc
Confidence            999999888 446666666554443 445555555  88888887533

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.4e-38  Score=334.16  Aligned_cols=224  Identities=24%  Similarity=0.375  Sum_probs=171.1

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh-----
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL-----  361 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~-----  361 (588)
                      ..|||+||||++  +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+++...-.     
T Consensus         4 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~   81 (386)
T PRK14277          4 KKDYYEILGVDR--NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG   81 (386)
T ss_pred             CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc
Confidence            479999999999  9999999999999999999999987788999999999999999999999999997642100     


Q ss_pred             ---------------------hhhhhhccccccCCCCccccCCCC-----CCCCCCC----------------CCCCCcc
Q 007833          362 ---------------------LDYFRRFQSASQKNGRHGFFGSGY-----ARSEADC----------------DDPFGES  399 (588)
Q Consensus       362 ---------------------~~~F~~F~~~~~~~g~~Gffgggf-----~rsr~~d----------------E~~~~is  399 (588)
                                           .++|++|++        ++|+++.     .+.++.+                +..+.++
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~--------~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~  153 (386)
T PRK14277         82 QGGFGQGGFGGGGFDFDFGGFGDIFEDIFG--------DFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVE  153 (386)
T ss_pred             cCCcCCCCccccCccccccchhHHHHHhhc--------ccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEE
Confidence                                 011111111        0111110     0112221                1245678


Q ss_pred             cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccC
Q 007833          400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYIC  479 (588)
Q Consensus       400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C  479 (588)
                      +.+.|+.|+|+|     .........|+.|+       |+|++.. .+++++|++|+. ++|+ .|.|.|..+..+|..|
T Consensus       154 r~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~~-~~C~-~C~G~G~~~~~~C~~C  218 (386)
T PRK14277        154 RFEKCDVCKGSG-----AKPGSKPVTCPVCH-------GTGQVRT-RQNTPFGRIVNI-RTCD-RCHGEGKIITDPCNKC  218 (386)
T ss_pred             eeccCCCCCCCC-----cCCCCCCccCCCCC-------CEEEEEE-EEeccCceEEEE-EECC-CCCcceeeccCCCCCC
Confidence            899999999998     66666788999999       9998876 456788998765 6999 8999999999999999


Q ss_pred             CCceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          480 QGMRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       480 ~G~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      +|.|++.+.+.++|+||+|+.+++ .+.+|.|.....++ +++|++..+  .+|++|.+-
T Consensus       219 ~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~  277 (386)
T PRK14277        219 GGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGG-PNGDLYIVIKVKPHPLFKRE  277 (386)
T ss_pred             CCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCC-CCccEEEEEEEecCCCeEEe
Confidence            999999999999999999998884 45666665543333 344555544  788888874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-37  Score=334.48  Aligned_cols=227  Identities=26%  Similarity=0.411  Sum_probs=168.0

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--hh----
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--EL----  361 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~--~~----  361 (588)
                      .|||+||||++  +||.+|||||||+||++||||+|++++.|+++|++|++||++|+||+||+.||+++...  +.    
T Consensus         1 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~   78 (391)
T PRK14284          1 MDYYTILGVSK--TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGF   78 (391)
T ss_pred             CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCc
Confidence            48999999999  89999999999999999999999887889999999999999999999999999986421  00    


Q ss_pred             -hhhh----------hhcccccc---CCCCccccCC-C--C-------CCCCCCC----------------CCCCCcccc
Q 007833          362 -LDYF----------RRFQSASQ---KNGRHGFFGS-G--Y-------ARSEADC----------------DDPFGESRR  401 (588)
Q Consensus       362 -~~~F----------~~F~~~~~---~~g~~Gffgg-g--f-------~rsr~~d----------------E~~~~isr~  401 (588)
                       ...|          ..+++...   ..-+..+|++ +  +       .+.++.+                ++.+.+.+.
T Consensus        79 ~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~  158 (391)
T PRK14284         79 GGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY  158 (391)
T ss_pred             CCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence             0001          00000000   0000112221 0  0       0112221                124556889


Q ss_pred             cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCC
Q 007833          402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG  481 (588)
Q Consensus       402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G  481 (588)
                      +.|+.|+|+|     .+.+.....|+.|+       |+|.+....     |++| ++++|+ .|.|.|....++|..|+|
T Consensus       159 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G  219 (391)
T PRK14284        159 KSCDACSGSG-----ANSSQGIKVCDRCK-------GSGQVVQSR-----GFFS-MASTCP-ECGGEGRVITDPCSVCRG  219 (391)
T ss_pred             ccCCCCcccc-----cCCCCCCeecCccC-------CeeEEEEEe-----ceEE-EEEECC-CCCCCCcccCCcCCCCCC
Confidence            9999999998     66677789999999       999887532     5655 677999 999999999999999999


Q ss_pred             ceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          482 MRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       482 ~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      .|++.+++.++|+||+|+.|++ .+.+|.|..+.+++ |++|++..+  .+|++|.+-
T Consensus       220 ~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~  276 (391)
T PRK14284        220 QGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGA-PAGDLYVFIDVEPHPVFERR  276 (391)
T ss_pred             cceecceEEEEEEECCCCCCCCEEEEeccccCCCCCC-CCCCEEEEEEEecCCCceee
Confidence            9999999999999999998884 46666666555443 444555555  888888874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.2e-38  Score=335.88  Aligned_cols=219  Identities=28%  Similarity=0.454  Sum_probs=169.3

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-h-----
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-E-----  360 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~-----  360 (588)
                      .+|||+||||++  +||.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||+||+.||+++... +     
T Consensus         4 ~~d~y~iLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~   80 (377)
T PRK14298          4 TRDYYEILGLSK--DASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSA   80 (377)
T ss_pred             CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCc
Confidence            369999999999  999999999999999999999997 4789999999999999999999999999986421 0     


Q ss_pred             -----------hhhhhhhccccccCCCCccccCCC-----CCCCCCCC----------------CCCCCccccccccccc
Q 007833          361 -----------LLDYFRRFQSASQKNGRHGFFGSG-----YARSEADC----------------DDPFGESRRIACKKCN  408 (588)
Q Consensus       361 -----------~~~~F~~F~~~~~~~g~~Gffggg-----f~rsr~~d----------------E~~~~isr~v~C~kC~  408 (588)
                                 +.++|+.|            |+++     ..+.++.+                +..+.+.+.+.|+.|+
T Consensus        81 ~~~~~~~~~~~~~d~f~~~------------Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~  148 (377)
T PRK14298         81 EDIFRGADFGGFGDIFEMF------------FGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCS  148 (377)
T ss_pred             ccccccCCcCcchhhhHhh------------hcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCC
Confidence                       00122222            2211     01112221                1245678899999999


Q ss_pred             CccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccce
Q 007833          409 NFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANT  488 (588)
Q Consensus       409 GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t  488 (588)
                      |+|     .+.+.....|+.|+       |+|.+....+ +++|+ ++++++|+ .|.|.|+....+|..|+|.|++.+.
T Consensus       149 G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~~-~~~g~-~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~  213 (377)
T PRK14298        149 GTG-----AKPGTSPKRCPTCG-------GTGQVTTTRS-TPLGQ-FVTTTTCS-TCHGRGQVIESPCPVCSGTGKVRKT  213 (377)
T ss_pred             CCc-----ccCCCCCCcCCCCC-------CccEEEEEEe-cCcee-EEEEEeCC-CCCCCCcccCCCCCCCCCccEEEEE
Confidence            998     66677788999999       9998887544 54455 57899999 9999999999999999999999999


Q ss_pred             eEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          489 HKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       489 ~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      +.++|+||+|+.+++ .+.+|.|.....+ .+++|++..+  .+|+.|.+-
T Consensus       214 ~~l~V~IppG~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~~h~~F~R~  263 (377)
T PRK14298        214 RKITVNVPAGADSGLRLKLSGEGEAGSPG-APSGDLYIVLHVKEHDYFERV  263 (377)
T ss_pred             EEEEecCCCCCCCCCEEEEecccCCCCCC-CCCcCEEEEEEEecCCCeEEE
Confidence            999999999998884 4666666554434 3344555544  788888873

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-37  Score=331.05  Aligned_cols=217  Identities=27%  Similarity=0.419  Sum_probs=170.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh-------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE-------  360 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~-------  360 (588)
                      .|||+||||++  +||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+++...-       
T Consensus         4 ~~~y~iLgv~~--~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   80 (376)
T PRK14280          4 RDYYEVLGVSK--SASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGG   80 (376)
T ss_pred             CChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCC
Confidence            69999999999  8999999999999999999999974 7899999999999999999999999999864210       


Q ss_pred             ------------hhhhhhhccccccCCCCccccCCC------CCCCCCCC----------------CCCCCccccccccc
Q 007833          361 ------------LLDYFRRFQSASQKNGRHGFFGSG------YARSEADC----------------DDPFGESRRIACKK  406 (588)
Q Consensus       361 ------------~~~~F~~F~~~~~~~g~~Gffggg------f~rsr~~d----------------E~~~~isr~v~C~k  406 (588)
                                  +.++|+.|            |+++      ..+.++.+                +..+.+++.+.|+.
T Consensus        81 ~~~~~~~~~~~~~~d~f~~~------------fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~  148 (376)
T PRK14280         81 GFGGGDFGGGFGFEDIFSSF------------FGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDT  148 (376)
T ss_pred             CCCCCCccccccchhhHHHH------------hCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCC
Confidence                        00122222            2211      01112221                23456788999999


Q ss_pred             ccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecc
Q 007833          407 CNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPA  486 (588)
Q Consensus       407 C~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~  486 (588)
                      |+|+|     ...+.....|+.|+       |+|.+.. .+.+++|++| .+++|+ .|.|.|.....+|..|+|.|++.
T Consensus       149 C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~  213 (376)
T PRK14280        149 CHGSG-----AKPGTSKETCSHCG-------GSGQVSV-EQNTPFGRVV-NRQTCP-HCNGTGQEIKEKCPTCHGKGKVR  213 (376)
T ss_pred             CCCcc-----cCCCCCCccCCCCC-------CEEEEEE-EeecCCceEE-EEEEcC-CCCCCCceecCCCCCCCCceEEE
Confidence            99998     56666788999999       9998876 4566788876 577999 99999999999999999999999


Q ss_pred             ceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833          487 NTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW  535 (588)
Q Consensus       487 ~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w  535 (588)
                      +.+.++|+||+|+.+++ .+.+|.|.....+ .+++|++..+  .+|+.|.+
T Consensus       214 ~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~~h~~F~R  264 (376)
T PRK14280        214 KRKKINVKIPAGVDNGQQIRVSGEGEPGVNG-GPAGDLYVVFRVRPHEFFER  264 (376)
T ss_pred             EEEEEEEEeCCCCcCCcEEEEcccccCCCCC-CCCcCEEEEEEEecCCCeEE
Confidence            99999999999998884 4666666655444 3444555555  88888887

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.3e-37  Score=327.80  Aligned_cols=226  Identities=24%  Similarity=0.386  Sum_probs=168.9

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh-------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE-------  360 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~-------  360 (588)
                      .|||+||||++  +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+++...-       
T Consensus         4 ~d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~   81 (380)
T PRK14297          4 KDYYEVLGLEK--GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFG   81 (380)
T ss_pred             CChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCC
Confidence            69999999999  899999999999999999999998778899999999999999999999999999864210       


Q ss_pred             --------------hhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCc
Q 007833          361 --------------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNF  410 (588)
Q Consensus       361 --------------~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~Gs  410 (588)
                                    +.++|++|++..    ..+.......+.++.+                +..+.+.+.+.|+.|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~d~f~~~fgg~----~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~  157 (380)
T PRK14297         82 SGGFGGFDFSDMGGFGDIFDSFFGGG----FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGT  157 (380)
T ss_pred             CCCCCCcCcccccchhHHHHHHhccC----ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccc
Confidence                          012222222210    0000000001112222                124567889999999999


Q ss_pred             cceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeE
Q 007833          411 HVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHK  490 (588)
Q Consensus       411 G~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~  490 (588)
                      |     .+++.....|+.|+       |.|.+... +++++|++| .+++|+ .|.|.|.....+|..|+|.|++.+.+.
T Consensus       158 G-----~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~  222 (380)
T PRK14297        158 G-----AKPGTSPKTCDKCG-------GTGQIRVQ-RNTPLGSFV-STTTCD-KCGGSGKVIEDPCNKCHGKGKVRKNRK  222 (380)
T ss_pred             c-----ccCCCcCccCCCcc-------CeEEEEEE-EEcCCceeE-EEEeCC-CCCCCceEcCCCCCCCCCCeEEEeEeE
Confidence            8     55666678999999       99988764 566778765 578999 899999999999999999999999999


Q ss_pred             EEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833          491 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW  535 (588)
Q Consensus       491 v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w  535 (588)
                      ++|+||+|+.++ ..+.+|.|.....++ +++|++..+  .+++.|.+
T Consensus       223 i~V~Ip~G~~~G~~I~l~g~G~~~~~~~-~~GDL~v~v~v~~h~~f~R  269 (380)
T PRK14297        223 IKVNVPAGVDTGNVIPLRGQGEHGKNGG-PTGDLYINIRVAPHKTFKR  269 (380)
T ss_pred             EEEEeCCCCCCCcEEEEecCccCCCCCC-CCccEEEEEEEcCCCCEEE
Confidence            999999999888 446666655443333 344555544  77777754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6e-37  Score=325.87  Aligned_cols=224  Identities=27%  Similarity=0.397  Sum_probs=167.9

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh---h---
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE---E---  360 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~---~---  360 (588)
                      .+|||+||||++  +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+++...   .   
T Consensus         3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~   80 (366)
T PRK14294          3 KRDYYEILGVTR--DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS   80 (366)
T ss_pred             CCChHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC
Confidence            379999999999  89999999999999999999999877889999999999999999999999999986421   0   


Q ss_pred             -----------hhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccce
Q 007833          361 -----------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVW  413 (588)
Q Consensus       361 -----------~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~  413 (588)
                                 +.++|.+|++.   ++..+. .....+.++.+                ++.+.+.+.+.|+.|+|+|  
T Consensus        81 ~~~~~~~~~~~~~d~f~~~fg~---g~~~~~-~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G--  154 (366)
T PRK14294         81 GFSGFDDIFSSFGDIFEDFFGF---GGGRRG-RSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSG--  154 (366)
T ss_pred             CcCccccchhhhhhhHHHhhcc---CCCcCC-cccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCcc--
Confidence                       01222222220   000000 00001112221                1245678899999999998  


Q ss_pred             eeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEE
Q 007833          414 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSF  493 (588)
Q Consensus       414 ~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V  493 (588)
                         .........|+.|+       |+|.+...     .|++| ++++|+ .|.|.|+....+|..|+|.|.+.+.+.++|
T Consensus       155 ---~~~~~~~~~C~~C~-------G~G~~~~~-----~G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V  217 (366)
T PRK14294        155 ---CEPGTSPTTCPQCG-------GSGQVTQS-----QGFFS-IRTTCP-RCRGMGKVIVSPCKTCHGQGRVRVSKTVQV  217 (366)
T ss_pred             ---ccCCCCcccCCCcC-------CeEEEEEE-----eeeEE-EEeeCC-CCCCcCeecCcCCCCCCCceEeecceeEEE
Confidence               56666678999999       99987652     16665 688999 999999999999999999999999999999


Q ss_pred             EeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          494 HVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       494 ~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      +||+|+.+++ .+.+|.|.....++.|+ |++..+  .+|+.|.+-
T Consensus       218 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~G-Dl~v~i~v~~h~~F~R~  262 (366)
T PRK14294        218 KIPAGVDTGSRLRLRGEGEAGVRGGPPG-DLYVFLTVEPHEFFERD  262 (366)
T ss_pred             ecCCCCcCCcEEEEccCccCCCCCCCCC-cEEEEEEEccCCcceec
Confidence            9999999884 46666666544443344 545444  888888873

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.8e-37  Score=327.39  Aligned_cols=223  Identities=27%  Similarity=0.445  Sum_probs=166.7

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-h---h-
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-E---L-  361 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~---~-  361 (588)
                      ..|||+||||++  +||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+++... +   . 
T Consensus         3 ~~~~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~   80 (373)
T PRK14301          3 QRDYYEVLGVSR--DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGF   80 (373)
T ss_pred             CCChHHhcCCCC--CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCC
Confidence            369999999999  89999999999999999999999877889999999999999999999999999976421 0   0 


Q ss_pred             -------------hhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccc
Q 007833          362 -------------LDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHV  412 (588)
Q Consensus       362 -------------~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~  412 (588)
                                   .++|.+|++.   ++..+  .....+.++.+                +..+.+.+.+.|+.|+|+| 
T Consensus        81 ~g~~~~~~~~~~f~d~f~~~fg~---g~~~~--~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G-  154 (373)
T PRK14301         81 GGFSSAEDIFSHFSDIFGDLFGF---SGGGS--RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG-  154 (373)
T ss_pred             CCcccccccccchHHHHHHHhhc---cCccc--ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc-
Confidence                         0111111110   00000  00011112221                2245678899999999998 


Q ss_pred             eeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEE
Q 007833          413 WIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPS  492 (588)
Q Consensus       413 ~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~  492 (588)
                          .........|+.|+       |+|.+....     |++| .+++|+ .|.|.|.....+|+.|+|.|++.+++.++
T Consensus       155 ----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~  216 (373)
T PRK14301        155 ----AAPGTSPETCRHCG-------GSGQVRQSQ-----GFFQ-IAVPCP-VCRGEGRVITHPCPKCKGSGIVQQTRELK  216 (373)
T ss_pred             ----cCCCCCCcccCCcc-------CeeEEEEEe-----eeEE-EEEeCC-CCCceeeecCCCCCCCCCCceeccceEEE
Confidence                66666778999999       999886531     5654 488999 89999999999999999999999999999


Q ss_pred             EEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          493 FHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       493 V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      |+||+|+.++ ..+.+|.|.....++ +++|++..+  .++++|.+-
T Consensus       217 V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDLiv~i~v~~h~~f~r~  262 (373)
T PRK14301        217 VRIPAGVDTGSRLRLRGEGEPGVHGG-PPGDLYVVITVEDDKIFQRQ  262 (373)
T ss_pred             EEeCCCCcCCCEEEEeccccCCCCCC-CCcCEEEEEEEEECCCceee
Confidence            9999999888 446666666544333 344555544  778888874

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-36  Score=327.08  Aligned_cols=240  Identities=27%  Similarity=0.443  Sum_probs=176.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--------  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~--------  359 (588)
                      .|||+||||++  +|+.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||+++...        
T Consensus         3 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~   80 (397)
T PRK14281          3 RDYYEVLGVSR--SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASG   80 (397)
T ss_pred             CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccC
Confidence            69999999999  89999999999999999999999877889999999999999999999999999976421        


Q ss_pred             ----------hhhhhh---hhccccccCC-C-----CccccCCC-CCC-----CCCCC----------------CCCCCc
Q 007833          360 ----------ELLDYF---RRFQSASQKN-G-----RHGFFGSG-YAR-----SEADC----------------DDPFGE  398 (588)
Q Consensus       360 ----------~~~~~F---~~F~~~~~~~-g-----~~Gffggg-f~r-----sr~~d----------------E~~~~i  398 (588)
                                +..++|   ++|+++.... +     +.+.++++ ...     .++.+                ++.+.+
T Consensus        81 ~~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~  160 (397)
T PRK14281         81 GGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI  160 (397)
T ss_pred             CCCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence                      011222   2333321000 0     00001111 000     12222                124567


Q ss_pred             ccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCccccc
Q 007833          399 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI  478 (588)
Q Consensus       399 sr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~  478 (588)
                      .+.+.|+.|+|+|     .... ....|+.|+       |.|.+++ .+++++|++|+ +++|+ .|.|.|....++|..
T Consensus       161 ~r~~~C~~C~G~G-----~~~~-~~~~C~~C~-------G~G~~~~-~~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~  224 (397)
T PRK14281        161 KKQVPCKECNGTG-----SKTG-ATETCPTCH-------GSGEVRQ-ASKTMFGQFVN-ITACP-TCGGEGRVVKDRCPA  224 (397)
T ss_pred             EeeecCCCCCCcc-----cCCC-CCccCCCCC-------CCcEEEE-EEecccceEEE-EEecC-CCcceeeeeCCCCCC
Confidence            8899999999998     4443 578999999       9998876 45677788765 66999 899999999999999


Q ss_pred             CCCceeccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhc
Q 007833          479 CQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAG  543 (588)
Q Consensus       479 C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~  543 (588)
                      |.|.|++.+++.++|+||+|+.++ ..+.+|.|..+..++.| +||+..+  .+|++|.+            |.+|+..+
T Consensus       225 C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~-GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~  303 (397)
T PRK14281        225 CYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAP-GDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGT  303 (397)
T ss_pred             CCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCC-CcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCC
Confidence            999999999999999999999888 44666666655444334 4555544  77888876            56776655


Q ss_pred             ccc
Q 007833          544 LFD  546 (588)
Q Consensus       544 ~f~  546 (588)
                      -+.
T Consensus       304 ~~~  306 (397)
T PRK14281        304 KVE  306 (397)
T ss_pred             eEE
Confidence            443

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-36  Score=324.80  Aligned_cols=221  Identities=24%  Similarity=0.392  Sum_probs=164.5

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--------  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~--------  359 (588)
                      +|||+||||++  +||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+++...        
T Consensus         3 ~d~Y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~   79 (382)
T PRK14291          3 KDYYEILGVSR--NATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQ   79 (382)
T ss_pred             CCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcc
Confidence            69999999999  8999999999999999999999975 789999999999999999999999999976421        


Q ss_pred             ------------hhhhhhhhccccccCCCCccccCC-----CC-----CCCCCCC----------------CCCCCcccc
Q 007833          360 ------------ELLDYFRRFQSASQKNGRHGFFGS-----GY-----ARSEADC----------------DDPFGESRR  401 (588)
Q Consensus       360 ------------~~~~~F~~F~~~~~~~g~~Gffgg-----gf-----~rsr~~d----------------E~~~~isr~  401 (588)
                                  ++.++|.+|++..   ++.+.|++     +.     .+.++.+                +..+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~d~f~~~f~~f---g~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~  156 (382)
T PRK14291         80 QGQEGFSDFGGGNIEDILEDVFDIF---GFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRY  156 (382)
T ss_pred             ccccccccccCCCHHHHHHHHHHhc---cccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeee
Confidence                        0112233322110   00001111     00     0112221                124567889


Q ss_pred             cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCC
Q 007833          402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG  481 (588)
Q Consensus       402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G  481 (588)
                      +.|+.|+|+|     .+.......|+.|+       |+|.+...     .|+ ++.+++|+ .|.|.|. ...+|..|+|
T Consensus       157 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-----~g~-~~~~~~C~-~C~G~G~-~~~~C~~C~G  216 (382)
T PRK14291        157 VPCEACGGTG-----YDPGSGEKVCPTCG-------GSGEIYQR-----GGF-FRISQTCP-TCGGEGV-LREPCSKCNG  216 (382)
T ss_pred             ccCCCCcccc-----CCCCCCCccCCCCC-------CceEEEEe-----cce-EEEEecCC-CCCCceE-EccCCCCCCC
Confidence            9999999998     66666788999999       99987663     133 45788999 9999995 6889999999


Q ss_pred             ceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833          482 MRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW  535 (588)
Q Consensus       482 ~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w  535 (588)
                      .|++.+.+.++|+||+|+.+++ .+.+|.|..+..++ +++|++..+  .+|+.|.+
T Consensus       217 ~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~-~~GDL~v~i~~~~h~~F~r  272 (382)
T PRK14291        217 RGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGG-PPGDLYIIVKVKPHPLFER  272 (382)
T ss_pred             CceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCC-CCccEEEEEEEccCCCeee
Confidence            9999999999999999998884 46666666544443 344555544  88888887

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3e-36  Score=321.01  Aligned_cols=220  Identities=28%  Similarity=0.448  Sum_probs=166.9

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhh------
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------  360 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~------  360 (588)
                      ..|||+||||++  +||.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||+++...-      
T Consensus         3 ~~d~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~   80 (371)
T PRK10767          3 KRDYYEVLGVSR--NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGG   80 (371)
T ss_pred             CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCC
Confidence            479999999999  899999999999999999999998778899999999999999999999999999764210      


Q ss_pred             --------hhhhhhhccccccCCCCccccCCC-----CCCCCCCC----------------CCCCCcccccccccccCcc
Q 007833          361 --------LLDYFRRFQSASQKNGRHGFFGSG-----YARSEADC----------------DDPFGESRRIACKKCNNFH  411 (588)
Q Consensus       361 --------~~~~F~~F~~~~~~~g~~Gffggg-----f~rsr~~d----------------E~~~~isr~v~C~kC~GsG  411 (588)
                              ..+.|.++++.        +|+++     ..+.++.+                +..+.+.+.+.|+.|+|+|
T Consensus        81 ~~~~~~~~~~~~f~~~f~~--------~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G  152 (371)
T PRK10767         81 GGFGGGGGFGDIFGDIFGD--------IFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG  152 (371)
T ss_pred             CCCCCccccccchhhhhhh--------hccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence                    00111111111        12211     01112221                2345678899999999998


Q ss_pred             ceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEE
Q 007833          412 VWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKP  491 (588)
Q Consensus       412 ~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v  491 (588)
                           ...+.....|+.|+       |+|.+....     |++| ++++|+ .|.|.|.....+|..|+|.|++.+.+.+
T Consensus       153 -----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l  213 (371)
T PRK10767        153 -----AKPGTSPKTCPTCH-------GAGQVRMQQ-----GFFT-VQQTCP-TCHGRGKIIKDPCKKCHGQGRVEKEKTL  213 (371)
T ss_pred             -----cCCCCCCccCCCCC-------CeeEEEEee-----ceEE-EEEeCC-CCCCceeECCCCCCCCCCCceEeeeeeE
Confidence                 56666678999999       999876632     5665 677999 9999999999999999999999999999


Q ss_pred             EEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          492 SFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       492 ~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      +|+||+|+.++ ..+.+|.|.....++ +++|++..+  .+|+.|.+-
T Consensus       214 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~~GDL~v~i~v~~h~~F~R~  260 (371)
T PRK10767        214 SVKIPAGVDTGDRIRLSGEGEAGERGG-PAGDLYVQIHVKEHPIFERD  260 (371)
T ss_pred             EEecCCCCCCCcEEEEecCccCCCCCC-CCcCEEEEEEEeeCCCEEEe
Confidence            99999999888 446666666544443 344554444  777787763

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-36  Score=325.17  Aligned_cols=227  Identities=26%  Similarity=0.437  Sum_probs=165.8

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchh----hhhhhh---
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD----ELRREE---  360 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~----~~~~~~---  360 (588)
                      .|||+||||++  +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||+    ++...-   
T Consensus         9 ~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          9 KDYYKVLGVPK--DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            69999999999  999999999999999999999998778899999999999999999999999998    543110   


Q ss_pred             ------------hhhhhhhccccccCCC--------CccccCCCC---CCCCCCC----------------CCCCCcccc
Q 007833          361 ------------LLDYFRRFQSASQKNG--------RHGFFGSGY---ARSEADC----------------DDPFGESRR  401 (588)
Q Consensus       361 ------------~~~~F~~F~~~~~~~g--------~~Gffgggf---~rsr~~d----------------E~~~~isr~  401 (588)
                                  ..++|..+....+..+        +.++|+++.   .+.++.+                ++.+.+++.
T Consensus        87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~  166 (389)
T PRK14295         87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ  166 (389)
T ss_pred             CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence                        0011111100000000        011222110   1112221                234567889


Q ss_pred             cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCC
Q 007833          402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG  481 (588)
Q Consensus       402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G  481 (588)
                      +.|+.|+|+|     .+.......|+.|+       |+|++....     |++| .+++|+ .|.|.|....++|..|.|
T Consensus       167 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G  227 (389)
T PRK14295        167 APCPACSGTG-----AKNGTTPRVCPTCS-------GTGQVSRNS-----GGFS-LSEPCP-DCKGRGLIADDPCLVCKG  227 (389)
T ss_pred             ccCCCCcccc-----cCCCCCCcCCCCCC-------CEeEEEEEe-----cceE-EEEecC-CCcceeEEeccCCCCCCC
Confidence            9999999998     66667788999999       999887632     3344 567999 999999999999999999


Q ss_pred             ceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          482 MRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       482 ~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      .|++.+.+.++|+||+|+.+++ .+.+|.|.....+ .+++|++..+  .+|+.|.+-
T Consensus       228 ~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~  284 (389)
T PRK14295        228 SGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERG-GPAGDLYVVVHVDPHPVFGRS  284 (389)
T ss_pred             CceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCC-CCCccEEEEEEEecCCCEEEe
Confidence            9999999999999999998884 4666665544333 3344555555  788888773

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=2.7e-36  Score=319.35  Aligned_cols=217  Identities=26%  Similarity=0.446  Sum_probs=169.0

Q ss_pred             CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh-------
Q 007833          289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL-------  361 (588)
Q Consensus       289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~-------  361 (588)
                      |||+||||++  +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+++.....       
T Consensus         1 d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~   77 (354)
T TIGR02349         1 DYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGG   77 (354)
T ss_pred             ChHHhCCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCC
Confidence            7999999999  899999999999999999999997 578999999999999999999999999997642100       


Q ss_pred             --------------hhhhhhccccccCCCCccccCCCC--------CCCCCCC----------------CCCCCcccccc
Q 007833          362 --------------LDYFRRFQSASQKNGRHGFFGSGY--------ARSEADC----------------DDPFGESRRIA  403 (588)
Q Consensus       362 --------------~~~F~~F~~~~~~~g~~Gffgggf--------~rsr~~d----------------E~~~~isr~v~  403 (588)
                                    .++|+.|            |+++.        .+.++.+                +..+.+.+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~f~~~------------fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~  145 (354)
T TIGR02349        78 GGFNGFDIGFFGDFGDIFGDF------------FGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKES  145 (354)
T ss_pred             CCcCCccccCcCchhhhHHHH------------hccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCc
Confidence                          0112222            22111        1112221                12456788999


Q ss_pred             cccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCce
Q 007833          404 CKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMR  483 (588)
Q Consensus       404 C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G  483 (588)
                      |+.|+|+|     .........|+.|+       |+|++.. .+.+++|++|+ +++|+ .|.|.|.....+|+.|+|.+
T Consensus       146 C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g  210 (354)
T TIGR02349       146 CETCHGTG-----AKPGTDPKTCPTCG-------GTGQVRR-QQGTPFGFFQQ-QQTCP-TCGGEGKIIKEPCSTCKGKG  210 (354)
T ss_pred             CCCCCCCC-----CCCCCCCccCCCCC-------CeeEEEE-EEeccCCceEE-EEecC-CCCCcceecCCCCCCCCCCc
Confidence            99999998     56666688999999       9998877 45788999876 67999 99999999999999999999


Q ss_pred             eccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          484 CPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       484 ~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      ++.+++.++|+||+|+.++ ..+.+|.|.....+ .+++|++..+  .+|+.|.+-
T Consensus       211 ~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~v~i~v~~h~~f~r~  265 (354)
T TIGR02349       211 RVKERKTITVKIPAGVDTGQRLRVSGKGNAGENG-GPNGDLYVVIRVKPHKIFERD  265 (354)
T ss_pred             EecccceEEEEECCCCCCCCEEEEecCccCCCCC-CCCCCEEEEEEEecCcceEEe
Confidence            9999999999999999998 44666666654433 3345555555  777777653

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.9e-36  Score=317.21  Aligned_cols=224  Identities=25%  Similarity=0.401  Sum_probs=167.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------  359 (588)
                      .|||+||||++  +||.+|||+|||+||+++|||+|++++ .|+++|++|++||++|+||.+|+.||+++...       
T Consensus         3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~   80 (365)
T PRK14290          3 KDYYKILGVDR--NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSN   80 (365)
T ss_pred             CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCC
Confidence            69999999999  899999999999999999999998664 79999999999999999999999999976421       


Q ss_pred             ----------hhhhhhhhccccccCCCCccccCC-CC---CCCCCCC----------------CCCCCcccccccccccC
Q 007833          360 ----------ELLDYFRRFQSASQKNGRHGFFGS-GY---ARSEADC----------------DDPFGESRRIACKKCNN  409 (588)
Q Consensus       360 ----------~~~~~F~~F~~~~~~~g~~Gffgg-gf---~rsr~~d----------------E~~~~isr~v~C~kC~G  409 (588)
                                ++.++|.+|+++..  +. .++++ +.   .+.++.+                ++.+.+.+.+.|+.|+|
T Consensus        81 ~~~~~~~~~~~~~d~f~~~fg~~~--~~-~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G  157 (365)
T PRK14290         81 FNWDNFTHFSDINDIFNQIFGGNF--GS-DFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG  157 (365)
T ss_pred             ccccccccccchhHHHHHHhcCcc--cc-ccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence                      11234454443210  00 00111 00   0111211                12355788999999999


Q ss_pred             ccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeE-EEEEecccccCCCceeecCcccccCCCceeccce
Q 007833          410 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF-QKVDVPCAYVCANSRIYNATDWYICQGMRCPANT  488 (588)
Q Consensus       410 sG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~-qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t  488 (588)
                      +|     ... .....|+.|+       |+|+++... .  +|++ |+.+++|+ .|.|.|+....+|..|+|.|++.+.
T Consensus       158 ~g-----~~~-~~~~~C~~C~-------G~G~~~~~~-~--~g~~~~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~  220 (365)
T PRK14290        158 TG-----AKN-GKLITCPTCH-------GTGQQRIVR-G--QGFFRMVTVTTCR-TCGGRGRIPEEKCPRCNGTGTVVVN  220 (365)
T ss_pred             cc-----CCC-CCCccCCCCC-------CcCEEEEEe-c--cCeEEEEEEEeCC-CCCCceeEccCCCCCCCCceeEEEe
Confidence            98     443 3678999999       999887644 2  3444 56678999 9999999999999999999999999


Q ss_pred             eEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          489 HKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       489 ~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      +.++|+||+|+.++ ..+.+|.|..  .+ .+++|++..+  .+|++|.+.
T Consensus       221 ~~~~V~Ip~G~~~G~~i~~~g~G~~--~~-~~~GDL~v~v~v~~h~~F~R~  268 (365)
T PRK14290        221 EDISVKIPKGATDNLRLRVKGKGQS--YG-GRTGDLYVVLRVNNDPNIQRI  268 (365)
T ss_pred             eEEEEEECCCCCCCcEEEEccccCC--CC-CCCCCEEEEEEEcCCCCEEEe
Confidence            99999999999988 4466666653  23 3455555555  888888874

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.1e-36  Score=319.21  Aligned_cols=237  Identities=25%  Similarity=0.397  Sum_probs=175.2

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-------
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------  359 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-------  359 (588)
                      ..|||++|||++  +||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+++...       
T Consensus         4 ~~~~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~   81 (386)
T PRK14289          4 KRDYYEVLGVSK--TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG   81 (386)
T ss_pred             cCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence            479999999999  99999999999999999999999887889999999999999999999999999976421       


Q ss_pred             --------hhhhhhhhc---cccccCCCCc--cccCCCC---CCCCCCC----------------CCCCCcccccccccc
Q 007833          360 --------ELLDYFRRF---QSASQKNGRH--GFFGSGY---ARSEADC----------------DDPFGESRRIACKKC  407 (588)
Q Consensus       360 --------~~~~~F~~F---~~~~~~~g~~--Gffgggf---~rsr~~d----------------E~~~~isr~v~C~kC  407 (588)
                              ++.++|.+|   ++... ++..  +.++++.   .+.++.+                +..+.+.+.+.|+.|
T Consensus        82 ~~~~~~~~~~~~~f~~f~~~fg~~~-gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C  160 (386)
T PRK14289         82 GGFSGEGMSMEDIFSMFGDIFGGHG-GGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC  160 (386)
T ss_pred             CCCCCCCcChhhhhHHhhhhhcccc-cCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence                    011222222   11100 0000  0011010   0112221                124556889999999


Q ss_pred             cCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccc
Q 007833          408 NNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPAN  487 (588)
Q Consensus       408 ~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~  487 (588)
                      +|+|     .........|+.|+       |.|.+.. .+++++|++|. +.+|+ .|.|.|+.....|..|.|.|++.+
T Consensus       161 ~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~  225 (386)
T PRK14289        161 HGTG-----AEGNNGSETCPTCK-------GSGSVTR-VQNTILGTMQT-QSTCP-TCNGEGKIIKKKCKKCGGEGIVYG  225 (386)
T ss_pred             CCCC-----CCCCCCCCcCCCCc-------CeEEEEE-EEecccceEEE-EEecC-CCCccccccCcCCCCCCCCcEEee
Confidence            9998     66677789999999       9998877 45677888864 88999 899999999999999999999999


Q ss_pred             eeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHHHh
Q 007833          488 THKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAVQA  542 (588)
Q Consensus       488 t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~~~  542 (588)
                      ++.++|+||+|+.++ ..+.+|.|.....++.| +|+++.+  .+++.|..-.++|..
T Consensus       226 ~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~-GDL~v~v~v~~~~~f~r~g~DL~~  282 (386)
T PRK14289        226 EEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVN-GDLLVVIEEEPHPELIRDENDLIY  282 (386)
T ss_pred             eEEEEEEeCCCCCCCCEEEEeccccCCCCCCCC-ccEEEEEEEecCCcccccccceeE
Confidence            999999999999998 55777777654333334 4544444  666667765555443

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.8e-36  Score=310.40  Aligned_cols=215  Identities=28%  Similarity=0.422  Sum_probs=163.6

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhh-----
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL-----  361 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~-----  361 (588)
                      .+.||+||||++  +||++|||||||+||++||||||++   |.|+|++|++||||||||+||+.||+++...-.     
T Consensus         3 ~~~~y~il~v~~--~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~   77 (337)
T KOG0712|consen    3 NTKLYDILGVSP--DASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG   77 (337)
T ss_pred             ccccceeeccCC--CcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCC
Confidence            478999999999  9999999999999999999999964   899999999999999999999999999853210     


Q ss_pred             --hhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeeccCcccc
Q 007833          362 --LDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASA  423 (588)
Q Consensus       362 --~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~k~~~~a  423 (588)
                        ...|++|++    .+    +.++.++.++.+                ..++.++++.+|++|+|.|     .. +..+
T Consensus        78 ~g~~~f~~~F~----~g----~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsG-----gk-sg~~  143 (337)
T KOG0712|consen   78 GGFGGFSQFFG----FG----GNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSG-----GK-SGSA  143 (337)
T ss_pred             CCCccHHHhcc----CC----CcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCC-----CC-CCCC
Confidence              011333332    00    001112222322                2367789999999999997     44 3455


Q ss_pred             cccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee--cCcccccCCCceeccceeEEEEEeCCcccC
Q 007833          424 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--NATDWYICQGMRCPANTHKPSFHVNTSVTS  501 (588)
Q Consensus       424 r~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~--~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d  501 (588)
                      ..|+.|+       |.|.... .++++|||.|+++.+|. .|.|+|..  ..+.|+.|+|.+++...+.++|+|++|+.+
T Consensus       144 ~~C~~C~-------GsGv~~~-~~~~gPg~~qs~q~~C~-~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~  214 (337)
T KOG0712|consen  144 PKCTTCR-------GSGVQTR-TRQMGPGMVQSPQLVCD-SCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPH  214 (337)
T ss_pred             CCCCCCC-------CCCceeE-EEeccccccccceeEec-cCCCccccccccccCcccccchhhhhhheeeccccCCCcc
Confidence            6899999       9996665 67899999999999999 99999865  899999999999999999999999999998


Q ss_pred             CCCcc-ccCCCCCCCCCCCCCccccCCChhH
Q 007833          502 KHNTS-KGTSSGQRGGRMPPPNLEETMTEDE  531 (588)
Q Consensus       502 ~~~r~-~g~g~~~~gg~~p~~~~~~~~~e~e  531 (588)
                      ++... .+++....+.-  +.|.+..+++.+
T Consensus       215 ~~ki~f~geadea~g~~--pgD~vl~i~~k~  243 (337)
T KOG0712|consen  215 GQKITFKGEADEAPGTK--PGDVVLLIDQKE  243 (337)
T ss_pred             cceeeeeeeeeecCCCc--CccEEEEecccc
Confidence            86533 23333333332  445555554444

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3e-35  Score=313.68  Aligned_cols=234  Identities=25%  Similarity=0.354  Sum_probs=173.0

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--------  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~--------  359 (588)
                      .|||+||||++  +||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||.++...        
T Consensus         3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~   79 (374)
T PRK14293          3 ADYYEILGVSR--DADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFP   79 (374)
T ss_pred             CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcC
Confidence            69999999999  8999999999999999999999974 789999999999999999999999999976421        


Q ss_pred             ------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeeec
Q 007833          360 ------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETK  417 (588)
Q Consensus       360 ------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t~  417 (588)
                            ++.++|.+|++.....+..+.......+.++.+                +..+.+.+.+.|..|+|+|     .
T Consensus        80 ~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G-----~  154 (374)
T PRK14293         80 DMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSG-----A  154 (374)
T ss_pred             CcccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcC-----C
Confidence                  012445555432100000000000001112211                1245678899999999998     6


Q ss_pred             cCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCC
Q 007833          418 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNT  497 (588)
Q Consensus       418 k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~  497 (588)
                      +.......|+.|+       |+|++... +++++|++|+ +.+|+ .|.|.|..+..+|..|.|.|++.+++.++|+||+
T Consensus       155 ~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp  224 (374)
T PRK14293        155 KPGTGPTTCSTCG-------GAGQVRRA-TRTPFGSFTQ-VSECP-TCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA  224 (374)
T ss_pred             CCCCCCeeCCCCC-------CcceEEEE-EecCcceEEE-EeeCC-CCCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence            6666778999999       99988774 4677888875 58999 9999999999999999999999999999999999


Q ss_pred             cccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHH
Q 007833          498 SVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAV  540 (588)
Q Consensus       498 Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~  540 (588)
                      |+.++ ..+.+|.|.....++.| +|++..+  .+++.|.+-+++|
T Consensus       225 G~~~G~~i~l~g~G~~~~~~~~~-GDL~v~v~v~~~~~f~r~g~DL  269 (374)
T PRK14293        225 GVDTGTRLRVSGEGDAGLRGGPP-GDLYVYLFVKNDPEFRRDGINI  269 (374)
T ss_pred             CCCCCCEEEEccCccCCCCCCCC-cCEEEEEEEeCCCccChhhhce
Confidence            99988 44666666544333333 4555544  6666777765444

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.2e-35  Score=313.33  Aligned_cols=227  Identities=24%  Similarity=0.385  Sum_probs=172.3

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhhhhh-----
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL-----  362 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~~~~-----  362 (588)
                      +|||+||||++  +||.+|||+|||+||++||||+++ ++.++++|++|++||++|+|+.+|+.||+++... +.     
T Consensus         3 ~~~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~-~~~~~~~   78 (372)
T PRK14300          3 QDYYQILGVSK--TASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA-FQNQQSR   78 (372)
T ss_pred             CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc-ccccccc
Confidence            69999999999  899999999999999999999997 4779999999999999999999999999976421 00     


Q ss_pred             --------------hhhhhccccccCCCCccccCCC--CCC----CCCCC----------------CCCCCccccccccc
Q 007833          363 --------------DYFRRFQSASQKNGRHGFFGSG--YAR----SEADC----------------DDPFGESRRIACKK  406 (588)
Q Consensus       363 --------------~~F~~F~~~~~~~g~~Gffggg--f~r----sr~~d----------------E~~~~isr~v~C~k  406 (588)
                                    ++|.+|++.        +|+++  ..+    .++.+                ++.+.+.+.+.|+.
T Consensus        79 ~~~g~~~~~~~~~~~~f~~~f~~--------~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~  150 (372)
T PRK14300         79 GGGGNHGGFHPDINDIFGDFFSD--------FMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDT  150 (372)
T ss_pred             CCCCCCCccccchhhhHHHHHHh--------hcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCC
Confidence                          112222111        11111  000    12221                22456788999999


Q ss_pred             ccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceecc
Q 007833          407 CNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPA  486 (588)
Q Consensus       407 C~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~  486 (588)
                      |+|+|     ...+.....|+.|+       |+|.+...     +|++| ++.+|+ .|.|.|.....+|..|.|.|++.
T Consensus       151 C~G~g-----~~~~~~~~~C~~C~-------G~G~~~~~-----~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~  211 (372)
T PRK14300        151 CHGSG-----SEKGETVTTCDACS-------GVGATRMQ-----QGFFT-IEQACH-KCQGNGQIIKNPCKKCHGMGRYH  211 (372)
T ss_pred             CCCcc-----cCCCCCCccCCCcc-------CeEEEEEe-----eceEE-EEEeCC-CCCccceEeCCCCCCCCCceEEE
Confidence            99998     66666788999999       99987652     26766 777999 99999999999999999999999


Q ss_pred             ceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhcccc
Q 007833          487 NTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAGLFD  546 (588)
Q Consensus       487 ~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~~f~  546 (588)
                      +++.++|+||+|+.++ ..+.+|.|..+..++.|+ |++..+  .+|++|.+            |.+|+..+-+.
T Consensus       212 ~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~G-DL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~  285 (372)
T PRK14300        212 KQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSG-DLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIE  285 (372)
T ss_pred             eeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCC-CEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEE
Confidence            9999999999999888 446666666544443344 444444  88888887            67777666543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.1e-35  Score=312.33  Aligned_cols=239  Identities=25%  Similarity=0.357  Sum_probs=173.9

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh-hh----
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-EL----  361 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~-~~----  361 (588)
                      .+|||+||||++  +||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+++... +.    
T Consensus         4 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~   80 (378)
T PRK14283          4 KRDYYEVLGVDR--NADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE   80 (378)
T ss_pred             cCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence            479999999999  9999999999999999999999974 889999999999999999999999999986421 00    


Q ss_pred             --------hhhhhhccccccCCCCccc-cCCCC--CCCCCCC----------------CCCCCcccccccccccCcccee
Q 007833          362 --------LDYFRRFQSASQKNGRHGF-FGSGY--ARSEADC----------------DDPFGESRRIACKKCNNFHVWI  414 (588)
Q Consensus       362 --------~~~F~~F~~~~~~~g~~Gf-fgggf--~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~  414 (588)
                              .++|..|.+.. .+.+..+ |+++.  .+.++.+                ...+.+.+.+.|+.|+|+|   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G---  156 (378)
T PRK14283         81 DIFNNINFEDIFQGFGFGI-GNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR---  156 (378)
T ss_pred             ccccccCccccccccccch-hhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc---
Confidence                    00011110000 0000001 22111  1112221                1245678899999999998   


Q ss_pred             eeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEE
Q 007833          415 ETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFH  494 (588)
Q Consensus       415 ~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~  494 (588)
                        .........|+.|+       |+|++.+. +.+++|++|+ +.+|+ .|.|.|.....+|..|+|.|++.+.+.++|+
T Consensus       157 --~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~  224 (378)
T PRK14283        157 --AEPGSEVKTCPTCG-------GTGQVKQV-RNTILGQMMN-VTTCP-DCQGEGKIVEKPCSNCHGKGVVRETKTISVK  224 (378)
T ss_pred             --cCCCCCCccCCCcC-------CccEEEEE-EeccCceEEE-EEECC-CCCccceecCCCCCCCCCceeeccceeEEEE
Confidence              56666788999999       99988874 4667888764 56999 9999999999999999999999999999999


Q ss_pred             eCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhccc
Q 007833          495 VNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAGLF  545 (588)
Q Consensus       495 Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~~f  545 (588)
                      ||+|+.++ ..+.+|.|.....++.+ +|+++.+  .+++.|.+            |.+|+..+-+
T Consensus       225 IppG~~~G~~i~l~g~G~~~~~~~~~-GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~  289 (378)
T PRK14283        225 IPAGVETGSRLRVSGEGEMGDRGGEP-GDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTV  289 (378)
T ss_pred             ECCCCCCCcEEEEeccccCCCCCCCC-ccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeE
Confidence            99999888 44666666554433333 4555544  66777765            4566666554

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.2e-35  Score=309.99  Aligned_cols=230  Identities=23%  Similarity=0.395  Sum_probs=172.5

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh--------
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--------  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~--------  359 (588)
                      .|||+||||++  +||.+|||+|||+||+++|||+|+ ++.|+++|++|++||++|+||.+|+.||.++...        
T Consensus         2 ~d~y~~Lgv~~--~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~   78 (371)
T PRK14292          2 MDYYELLGVSR--TASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGD   78 (371)
T ss_pred             CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCc
Confidence            58999999999  899999999999999999999997 5789999999999999999999999999976421        


Q ss_pred             -------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccCccceeee
Q 007833          360 -------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET  416 (588)
Q Consensus       360 -------~~~~~F~~F~~~~~~~g~~Gffgggf~rsr~~d----------------E~~~~isr~v~C~kC~GsG~~~~t  416 (588)
                             +..++|.+|++.....+.   .+ ...+.++.+                ...+.+.+.+.|+.|+|+|     
T Consensus        79 ~~~~~~~d~~d~f~~~fg~~~~~~~---~~-~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G-----  149 (371)
T PRK14292         79 PFGGMGFDPMDIFEQLFGGAGFGGG---RG-RRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSR-----  149 (371)
T ss_pred             ccCccCCChHHHHHHhhCCCCcCCC---CC-cccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccc-----
Confidence                   011344444332100000   00 011112221                1245578889999999998     


Q ss_pred             ccCcc-cccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEe
Q 007833          417 KKSKA-SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHV  495 (588)
Q Consensus       417 ~k~~~-~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~V  495 (588)
                      ..... ....|+.|+       |+|.+.... +..+|++|+ +++|+ .|.|.|......|..|.|.|++.+.+.++|+|
T Consensus       150 ~~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I  219 (371)
T PRK14292        150 TEPGGKPPKTCPTCR-------GAGAVRAQA-RTIFGVVET-QQPCP-TCRGEGQIITDPCTVCRGRGRTLKAETVKVKL  219 (371)
T ss_pred             cCCCCCCCccCCCCC-------CccEEEEEE-eccCceEEE-eeecC-CCcccceecCCCCCCCCCceEEeecceEEEEE
Confidence            44333 368899999       999887754 455688765 77999 89999999999999999999999999999999


Q ss_pred             CCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHHHHHHHHh
Q 007833          496 NTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWLQNAVQA  542 (588)
Q Consensus       496 p~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl~~~~~~  542 (588)
                      |+|+.++ ..+.+|.|..+.++  + +|+++.+  .+|+.|.+-.++|..
T Consensus       220 p~G~~~G~~i~~~G~G~~~~~~--~-GDL~v~i~v~~h~~f~r~g~dL~~  266 (371)
T PRK14292        220 PRGIDEGYRIRVAGMGNEGPGG--N-GDLYVHIEMEPHPELRREQEHLIY  266 (371)
T ss_pred             CCCCCCCcEEEEecCcCCCCCC--C-CCEEEEEEEecCCccccchhceeE
Confidence            9999998 55777777664433  2 5555555  778888886655443

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.3e-26  Score=239.65  Aligned_cols=201  Identities=24%  Similarity=0.393  Sum_probs=150.9

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh------hh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------EL  361 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~------~~  361 (588)
                      .|||+||||++  +|+..|||+||++||++||||.|.+ ++|+++|++|.+|||+|+|++||+.||..+...      +.
T Consensus        43 ~d~Y~vLgv~~--~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~  119 (288)
T KOG0715|consen   43 EDYYKVLGVSR--NATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNP  119 (288)
T ss_pred             cchhhhhCcCC--CCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCc
Confidence            48999999999  9999999999999999999999986 699999999999999999999999999987643      12


Q ss_pred             hhhhhhcccc-ccCC--CCccccC--CCCCC-CCCCCCCCCCcccccccccccCccceeeeccCcccccccccccccccc
Q 007833          362 LDYFRRFQSA-SQKN--GRHGFFG--SGYAR-SEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA  435 (588)
Q Consensus       362 ~~~F~~F~~~-~~~~--g~~Gffg--ggf~r-sr~~dE~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~a  435 (588)
                      .+.|..++.. ....  +....+.  ..+.. .++. ...++++....|.+|.|.+     ..+......|..|.     
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~-~~~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~~~-----  188 (288)
T KOG0715|consen  120 FDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGS-KKRISFNVLSDCETCFGSG-----AEEGAKRESCKTCS-----  188 (288)
T ss_pred             cchHHHhhcccccccccCcccccccccCHHHHhhcc-ccceEEEeecccccccCcC-----cccccccccchhhh-----
Confidence            3444444333 0000  0000000  00000 1111 3456677888999999998     67777889999999     


Q ss_pred             cCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCceeccceeEEEEEeCCcccCC-CCccccCCC
Q 007833          436 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSS  511 (588)
Q Consensus       436 k~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~  511 (588)
                        |.|.+..... ..+.+    + +|. .|.+.+.+..+.|..|.|.+.+..++.+.+.+|+|+.++ ..+..+.+.
T Consensus       189 --~~~~~~~~~~-~~f~~----~-~~~-~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~  256 (288)
T KOG0715|consen  189 --GRGLVSNPKE-DPFIL----Y-TCS-YCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGN  256 (288)
T ss_pred             --Cccccccccc-CCcce----e-ecc-cccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCc
Confidence              9996655332 22322    2 799 799999888888999999999999999999999999877 556655444

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.1e-26  Score=237.99  Aligned_cols=74  Identities=42%  Similarity=0.587  Sum_probs=69.9

Q ss_pred             HHhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          282 VRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       282 ~ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..++..+|||+||||++  +|+..|||+||||||++|||||||+||.|.+.|++|+.||||||||+||+.||.++.
T Consensus        10 ~~v~~~rDfYelLgV~k--~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE   83 (336)
T KOG0713|consen   10 EAVLAGRDFYELLGVPK--NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE   83 (336)
T ss_pred             hhhhcCCCHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence            34556689999999999  999999999999999999999999999999999999999999999999999999983

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.81  E-value=7.2e-20  Score=190.93  Aligned_cols=67  Identities=33%  Similarity=0.520  Sum_probs=63.4

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      .+|||+||||++  ++|.+|||+|||+||+++|||+|+ ++.|+++|++|++||++|+||.+|+.||.++
T Consensus         3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          3 LKDYYAIMGVKP--TDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             cCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            369999999999  899999999999999999999997 4789999999999999999999999999976

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.3e-18  Score=175.62  Aligned_cols=68  Identities=40%  Similarity=0.637  Sum_probs=65.7

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|+|+|||+++  +|+.++|||+||+|+++||||+++++|++.++|++||+||++|+||.||..||+++.
T Consensus        31 ~~LYdVLgl~k--~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   31 LDLYDVLGLPK--TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             hHHHHHhCCCc--ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            68999999999  999999999999999999999999999999999999999999999999999999863

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.7e-18  Score=179.13  Aligned_cols=70  Identities=46%  Similarity=0.680  Sum_probs=67.4

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR  358 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~  358 (588)
                      ..|||++||+++  +++.+|||||||++|++|||||||+||+|.++|+.|.+||+||+|+.+|+.||+.+..
T Consensus         4 ~~dyY~lLgi~~--~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~   73 (296)
T KOG0691|consen    4 DTDYYDLLGISE--DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS   73 (296)
T ss_pred             cchHHHHhCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            579999999999  9999999999999999999999999999999999999999999999999999998754

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=6.2e-18  Score=175.37  Aligned_cols=68  Identities=37%  Similarity=0.541  Sum_probs=64.4

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..|||+||||++  +||.+|||+|||+||+++|||+|+ ++.|+++|++|++||++|+||++|+.||+++.
T Consensus         3 ~~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPK--NASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            379999999999  899999999999999999999997 58899999999999999999999999999764

>PF14901 Jiv90: Cleavage inducing molecular chaperone

Probab=99.69  E-value=7.5e-18  Score=146.29  Aligned_cols=90  Identities=41%  Similarity=0.852  Sum_probs=82.1

Q ss_pred             cccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccc
Q 007833          398 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY  477 (588)
Q Consensus       398 isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~  477 (588)
                      ..+.+.|++|+|.|+|+.|.++...+++|++|+++||||||++|+|.+..    |+..     +.|.|.+++++|+++|+
T Consensus         2 a~n~i~C~~C~~~H~r~~t~r~~~~AR~C~~C~~~H~Ak~gDiWaE~~~~----G~~~-----~yy~c~~g~VyDiTeWA   72 (94)
T PF14901_consen    2 ASNTIRCDKCGGKHKRIETDRPPSAARYCQDCKIRHPAKEGDIWAESSSL----GFLW-----TYYACMDGKVYDITEWA   72 (94)
T ss_pred             ccceeechhhCCeeeeEEecCchhhhHhHHHhhhhcccccCCeEEEeccc----ceEE-----EEEEEcCceEEehhhhh
Confidence            46789999999999999999999999999999999999999999998643    4432     56799999999999999


Q ss_pred             cCCCcee--ccceeEEEEEeC
Q 007833          478 ICQGMRC--PANTHKPSFHVN  496 (588)
Q Consensus       478 ~C~G~G~--~~~t~~v~V~Vp  496 (588)
                      +|+|+.+  .+++|.|+++|.
T Consensus        73 ~Cq~~~~~l~~ntH~vqyri~   93 (94)
T PF14901_consen   73 TCQGMHLHLRPNTHRVQYRIN   93 (94)
T ss_pred             hccccccccCCCcccceeeec
Confidence            9999999  999999999986

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.68  E-value=3.3e-17  Score=132.20  Aligned_cols=63  Identities=40%  Similarity=0.713  Sum_probs=59.7

Q ss_pred             CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhhhcchhhhch
Q 007833          289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYD  353 (588)
Q Consensus       289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-~A~e~Fk~I~~AYevLsD~~kR~~YD  353 (588)
                      |||+||||++  +++.+|||++|+++++++|||+++.++ .+++.|+.|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~--~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPP--DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTT--TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCC--CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999  899999999999999999999997654 58899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.8e-17  Score=174.32  Aligned_cols=68  Identities=41%  Similarity=0.600  Sum_probs=63.8

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      .+.||+||||.+  +|+..|||++||+|||+|||||||+. .+|++.|+.|+.||+|||||+.|+.||.+.
T Consensus         7 ~~c~YE~L~v~~--~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr   75 (508)
T KOG0717|consen    7 KRCYYEVLGVER--DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR   75 (508)
T ss_pred             hhHHHHHhcccc--cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence            368999999999  99999999999999999999999865 679999999999999999999999999874

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.9e-16  Score=169.11  Aligned_cols=69  Identities=36%  Similarity=0.566  Sum_probs=63.2

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~---p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..|||.+|+|++  +||.+|||+||||+++.|||||..+.   ..|++.|++|++||||||||++|+.||.++.
T Consensus         8 e~e~Ya~LNlpk--dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~   79 (546)
T KOG0718|consen    8 EIELYALLNLPK--DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE   79 (546)
T ss_pred             hhhHHHHhCCCc--ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence            358999999999  99999999999999999999999743   3489999999999999999999999998764

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.61  E-value=4.1e-16  Score=178.58  Aligned_cols=70  Identities=31%  Similarity=0.385  Sum_probs=65.1

Q ss_pred             cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833          286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR  358 (588)
Q Consensus       286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~  358 (588)
                      ..++||+||||++  +||.+|||+|||+||++|||||+++ +.|.++|++|++||+|||||.+|+.||++|..
T Consensus       571 ~d~dYYdILGVs~--dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~  640 (1136)
T PTZ00341        571 PDTLFYDILGVGV--NADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGYD  640 (1136)
T ss_pred             CCCChHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence            3579999999999  9999999999999999999999986 47889999999999999999999999998753

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=8e-16  Score=152.46  Aligned_cols=69  Identities=38%  Similarity=0.612  Sum_probs=63.5

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG--NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~--~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .+|+|+||||.+  +|+..+||||||+|||++|||+++.  ..+|+++|+.|+.||+||+|.++|+.||+.+.
T Consensus        13 ~~d~YevLGVer--~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   13 KKDLYEVLGVER--DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             ccCHHHHhhhcc--cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            469999999999  9999999999999999999999953  35689999999999999999999999999764

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.58  E-value=2.4e-15  Score=119.33  Aligned_cols=59  Identities=49%  Similarity=0.756  Sum_probs=54.7

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHhhhcch
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-NEKAVEAFKKLQNAYEVLFDSFK  348 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~-~p~A~e~Fk~I~~AYevLsD~~k  348 (588)
                      .|||+||||++  +++.++||++||++++++|||++++ .+.+++.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~--~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            48999999999  8999999999999999999999975 57899999999999999999853

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.4e-15  Score=143.98  Aligned_cols=67  Identities=42%  Similarity=0.681  Sum_probs=63.9

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-AVEAFKKLQNAYEVLFDSFKRKAYDDE  355 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-A~e~Fk~I~~AYevLsD~~kR~~YD~~  355 (588)
                      ..|||+||||++  +|+.+|||+|||++|+++|||+++.++. |++.|+.|++||++|+|+.+|+.||..
T Consensus         5 ~~~~y~iLgv~~--~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           5 LLDYYEILGVPP--NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            469999999999  9999999999999999999999998775 999999999999999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.55  E-value=8.4e-15  Score=114.10  Aligned_cols=55  Identities=44%  Similarity=0.680  Sum_probs=51.6

Q ss_pred             CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 007833          289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD  345 (588)
Q Consensus       289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD  345 (588)
                      |||++|||++  +++.++||++||++++++|||++++.+.+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~--~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999  899999999999999999999997546789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=2e-14  Score=141.47  Aligned_cols=74  Identities=28%  Similarity=0.414  Sum_probs=66.2

Q ss_pred             HhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833          283 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR  358 (588)
Q Consensus       283 ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~  358 (588)
                      +-....|+||||||+|  ++|+.|||||||+|++++||||++...+.++.|..|.+||+.|+|+..|+.|.+++..
T Consensus        94 ~~~~~fDPyEILGl~p--gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P  167 (230)
T KOG0721|consen   94 RERQKFDPYEILGLDP--GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP  167 (230)
T ss_pred             HHhhcCCcHHhhCCCC--CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence            3344579999999999  8999999999999999999999986456778899999999999999999999998753

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.47  E-value=5.2e-14  Score=146.64  Aligned_cols=68  Identities=37%  Similarity=0.508  Sum_probs=62.9

Q ss_pred             cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833          286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFDSFKRKAYDDE  355 (588)
Q Consensus       286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p---~A~e~Fk~I~~AYevLsD~~kR~~YD~~  355 (588)
                      ..+|||+||||.+  +|+..||.|||||+|.+||||-..+.+   .|+.+|-.|..|-|||+||+||+.||..
T Consensus       392 ~kRDYYKILGVkR--nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  392 GKRDYYKILGVKR--NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             ccchHHHHhhhcc--cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            3479999999999  999999999999999999999987643   4899999999999999999999999985

>PHA03102 Small T antigen; Reviewed

Probab=99.47  E-value=3.4e-14  Score=134.66  Aligned_cols=65  Identities=26%  Similarity=0.431  Sum_probs=59.6

Q ss_pred             CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833          288 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR  358 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~a--s~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~  358 (588)
                      ..+|+||||++  +|  |.+|||+|||++|+++||||+++    +++|++|++||++|+|+.+|..||.++..
T Consensus         5 ~~l~~vLGl~~--~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~   71 (153)
T PHA03102          5 KELMDLLGLPR--SAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED   71 (153)
T ss_pred             HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence            46899999999  89  99999999999999999999853    47999999999999999999999998743

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.47  E-value=4.4e-14  Score=159.14  Aligned_cols=67  Identities=34%  Similarity=0.540  Sum_probs=63.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  +|+.++||+|||+|++++|||++++ +.+.++|++|++||++|+||.+|+.||.++.
T Consensus         2 ~DYYeVLGVs~--dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDR--DADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            59999999999  8999999999999999999999975 7889999999999999999999999999764

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.40  E-value=3.5e-13  Score=130.16  Aligned_cols=70  Identities=27%  Similarity=0.442  Sum_probs=61.0

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||++|||++..+++..+||++||++++++|||+....+.     |.+.|+.||+||++|+||.+|+.|+-.+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~   75 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH   75 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence            38999999999556889999999999999999999865432     56789999999999999999999996543

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=8e-13  Score=127.16  Aligned_cols=70  Identities=31%  Similarity=0.459  Sum_probs=60.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~---A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||++|||++..+++.++||++||++++++|||++.....   +.+.+..|++||++|+||.+|+.|+..+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            58999999999545899999999999999999999864222   33568899999999999999999987653

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.35  E-value=9e-13  Score=127.93  Aligned_cols=70  Identities=33%  Similarity=0.468  Sum_probs=60.9

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHH-----HHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKA-----VEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A-----~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||++|||++..+++..+||++||++++++|||++...+.+     .+.++.||+||++|+||.+|..|+..+.
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~   80 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR   80 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence            699999999996568899999999999999999998755443     3456899999999999999999997553

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.33  E-value=1.9e-12  Score=125.33  Aligned_cols=71  Identities=28%  Similarity=0.363  Sum_probs=63.0

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..|||++||+++.-+.+.++||++||++++++|||++...+.     +.+.|..||+||++|+||.+|+.|+-.+.
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            469999999999666889999999999999999999865443     56789999999999999999999997654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.2e-12  Score=139.18  Aligned_cols=68  Identities=41%  Similarity=0.689  Sum_probs=64.2

Q ss_pred             cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833          286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDE  355 (588)
Q Consensus       286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~  355 (588)
                      +.+|||.|||+.+  +++.+|||||||++|+.+|||++..+ .+++.+|+++.+||.+|+||.+|..||..
T Consensus       371 kRkd~ykilGi~~--~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  371 KRKDWYKILGISR--NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhHHHHhhhhh--hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            3579999999999  89999999999999999999999887 77999999999999999999999999975

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.6e-12  Score=130.63  Aligned_cols=69  Identities=43%  Similarity=0.598  Sum_probs=62.5

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..|||+||+|.+  +|+.+|||+|||++|+++|||||+.+ ..|+++|+++.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~--~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIAR--SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccc--cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            369999999998  88888999999999999999999764 2466689999999999999999999999875

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=4.6e-12  Score=123.35  Aligned_cols=88  Identities=36%  Similarity=0.518  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCCCcHHHHHHhhcCC------CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHH
Q 007833          265 VPSTSGDDSEMTSEDEVVRLLNCT------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQ  337 (588)
Q Consensus       265 ~~s~~~~~s~~ts~~e~~ril~~~------d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~  337 (588)
                      ..++...++.+++.++++|++.+.      |+|+||.|.|  ..+.++||+.||+|++.+|||||++| +.|..+|..|.
T Consensus        24 vk~~ek~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdp--ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivk  101 (250)
T KOG1150|consen   24 VKSIEKRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDP--EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVK  101 (250)
T ss_pred             HHhhhhhhcccCcHHHHHHHhcCCccccccChHHHHhcCC--CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHH
Confidence            456677889999999999999954      8999999999  89999999999999999999999998 78999999999


Q ss_pred             HHHHHhhhcchhhhchh
Q 007833          338 NAYEVLFDSFKRKAYDD  354 (588)
Q Consensus       338 ~AYevLsD~~kR~~YD~  354 (588)
                      +||..|-|+.-|+.-+.
T Consensus       102 KA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen  102 KAYKLLENDKIRKRCLD  118 (250)
T ss_pred             HHHHHHhCHHHHHHHHH
Confidence            99999999986655443

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.1e-12  Score=129.70  Aligned_cols=69  Identities=33%  Similarity=0.553  Sum_probs=63.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~  359 (588)
                      .|.|+||||.+  +++..||+||||+||+++|||++++ +++.+.|+.|..|||+|.|.+.|..||-.+..+
T Consensus        33 enCYdVLgV~R--ea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   33 ENCYDVLGVAR--EANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             hhHHHHhhhhh--hccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence            59999999999  8899999999999999999999985 788899999999999999999999999766443

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.15  E-value=2.7e-11  Score=109.99  Aligned_cols=51  Identities=18%  Similarity=0.318  Sum_probs=46.4

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF  344 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLs  344 (588)
                      .++|+||||++  ++|.+|||++||+|++++|||++.    ..+.|++|++|||+|.
T Consensus        65 ~eAy~ILGv~~--~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~  115 (116)
T PTZ00100         65 SEAYKILNISP--TASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence            58999999999  899999999999999999999963    3578999999999995

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.14  E-value=4.9e-11  Score=122.81  Aligned_cols=56  Identities=39%  Similarity=0.528  Sum_probs=50.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---C----hHHHHHHHHHHHHHHHhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N----EKAVEAFKKLQNAYEVLFD  345 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~---~----p~A~e~Fk~I~~AYevLsD  345 (588)
                      .|+|+||||++  ++|.+|||+|||+|+++||||++..   +    +.|+++|++|++||++|+.
T Consensus       200 ~~ay~vLgv~~--~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGVSE--SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999  8999999999999999999999742   1    3588999999999999985

>PHA02624 large T antigen; Provisional

Probab=99.08  E-value=8e-11  Score=131.76  Aligned_cols=59  Identities=25%  Similarity=0.446  Sum_probs=55.3

Q ss_pred             CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhc
Q 007833          288 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY  352 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~a--s~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~Y  352 (588)
                      .++|++|||++  +|  +.+|||+|||++|+++||||+.    ++++|++|++||++|+|+.+|..|
T Consensus        11 ~elyelLGL~~--~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         11 KELMDLLGLPM--AAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            58999999999  89  9999999999999999999974    258999999999999999999998

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.05  E-value=2.3e-10  Score=94.10  Aligned_cols=65  Identities=25%  Similarity=0.515  Sum_probs=50.1

Q ss_pred             cccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec-CcccccCCCc
Q 007833          404 CKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN-ATDWYICQGM  482 (588)
Q Consensus       404 C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~-~~~C~~C~G~  482 (588)
                      |+.|+|+|     .+++..+..|+.|+       |+|++....+ . ++++++++++|+ .|.|.|.++ .++|+.|+|.
T Consensus         1 C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~~-~-~~~~~~~~~~C~-~C~G~G~~i~~~~C~~C~G~   65 (66)
T PF00684_consen    1 CPKCNGTG-----AKPGKKPKTCPQCN-------GSGQVTRRQQ-T-PGGVFQMQQTCP-KCGGTGKIIEKDPCKTCKGS   65 (66)
T ss_dssp             -CCCTTTS-----B-STTT-EE-TTSS-------SSSEEEEEEE-S-SSTTEEEEEE-T-TTSSSSEE-TSSB-SSSTTS
T ss_pred             CCcCCCcc-----cCCCCCCcCCcCCC-------CeeEEEEEEe-C-CCeEEEEEEECC-CCcceeeEECCCCCCCCCCc
Confidence            89999998     77888899999999       9999988655 4 445567889999 899999887 9999999997


Q ss_pred             e
Q 007833          483 R  483 (588)
Q Consensus       483 G  483 (588)
                      |
T Consensus        66 g   66 (66)
T PF00684_consen   66 G   66 (66)
T ss_dssp             S
T ss_pred             C
Confidence            5

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.91  E-value=8.4e-10  Score=118.27  Aligned_cols=69  Identities=29%  Similarity=0.447  Sum_probs=62.5

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---C--hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N--EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~---~--p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      -.|+|||||++.  +++..|||++||+|+.|+||||.+.   +  .+-+|.++.|++||+.|+|+..|+.|-.++.
T Consensus        97 ~fDPyEILGI~~--~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt  170 (610)
T COG5407          97 GFDPYEILGIDQ--DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT  170 (610)
T ss_pred             CCChHHhhcccC--CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence            469999999999  8999999999999999999999864   1  4578999999999999999999999988754

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.85  E-value=3.9e-09  Score=102.42  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=60.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-----~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||++||+++.-+.+..++++.||+|.+++|||+....+     .|.+.-..||+||.+|.||-+|+.|=-.+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            6899999999965699999999999999999999986543     245678899999999999999999976543

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.82  E-value=4.9e-09  Score=100.20  Aligned_cols=57  Identities=30%  Similarity=0.402  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          301 NVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       301 ~as~~eIKkAYRklalk~HPDkn~~~p-----~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      +.+..+|+++||++++++|||+.+...     .+.+.|+.||+||++|+||.+|+.|+..+.
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            467899999999999999999965432     266889999999999999999999998764

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=8.9e-09  Score=104.60  Aligned_cols=69  Identities=38%  Similarity=0.486  Sum_probs=60.8

Q ss_pred             CCCcccccCcccCC-CCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833          287 CTDHYSALGLSRFE-NVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE  355 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~-~as~~eIKkAYRklalk~HPDkn~--~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~  355 (588)
                      ..|+|.+|||+.+. .+++.+|+++.++...+||||+..  ++.+..+.|+.|+.||+||+|+.+|.+||.-
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~  113 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN  113 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence            46999999999753 378899999999999999999972  3456789999999999999999999999974

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.2e-06  Score=101.45  Aligned_cols=55  Identities=29%  Similarity=0.414  Sum_probs=46.5

Q ss_pred             CCcccccCcccCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 007833          288 TDHYSALGLSRFEN--VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD  345 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~--as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD  345 (588)
                      .+-|+||.++-...  .+.+.|||+|+|||.+||||||   |+..|+|.++|+|||.|+.
T Consensus      1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHH
Confidence            47899999986321  2347899999999999999999   5678999999999999983

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.08  E-value=4.5e-06  Score=75.66  Aligned_cols=61  Identities=23%  Similarity=0.380  Sum_probs=48.0

Q ss_pred             ccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCccccc
Q 007833          399 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI  478 (588)
Q Consensus       399 sr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~  478 (588)
                      ...+.|..|+|+|     .      +.|+.|+       |+|++....   . + .++.+++|+ .|.|.|..   .|..
T Consensus        39 ~~~v~C~~C~GsG-----~------~~C~~C~-------G~G~v~~~~---~-g-~~q~~~~C~-~C~G~Gk~---~C~~   91 (111)
T PLN03165         39 ENTQPCFPCSGTG-----A------QVCRFCV-------GSGNVTVEL---G-G-GEKEVSKCI-NCDGAGSL---TCTT   91 (111)
T ss_pred             ccCCCCCCCCCCC-----C------cCCCCCc-------CcCeEEEEe---C-C-cEEEEEECC-CCCCccee---eCCC
Confidence            4567899999997     2      3899999       999887532   2 2 256788999 89999974   5999


Q ss_pred             CCCceecc
Q 007833          479 CQGMRCPA  486 (588)
Q Consensus       479 C~G~G~~~  486 (588)
                      |+|.+.++
T Consensus        92 C~G~G~~~   99 (111)
T PLN03165         92 CQGSGIQP   99 (111)
T ss_pred             CCCCEEEe
Confidence            99999654

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=4e-05  Score=76.95  Aligned_cols=55  Identities=24%  Similarity=0.475  Sum_probs=49.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHH-Hhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYE-VLFD  345 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYe-vLsD  345 (588)
                      ..+|.+|||..  .|+.+|++.||.+|++++|||...+ ....+.|.+|.+||. ||+.
T Consensus        47 ~e~fril~v~e--~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEE--GADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccc--cCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence            36999999999  8899999999999999999999863 556789999999997 8875

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00048  Score=61.81  Aligned_cols=50  Identities=22%  Similarity=0.324  Sum_probs=42.2

Q ss_pred             cccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcc
Q 007833          292 SALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF  347 (588)
Q Consensus       292 ~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~  347 (588)
                      .||||++  +++.+.||+|+||.-+..|||+... |--.   .+||||+++|....
T Consensus        60 lIL~v~~--s~~k~KikeaHrriM~~NHPD~GGS-PYlA---sKINEAKdlLe~~~  109 (112)
T KOG0723|consen   60 LILGVTP--SLDKDKIKEAHRRIMLANHPDRGGS-PYLA---SKINEAKDLLEGTS  109 (112)
T ss_pred             HHhCCCc--cccHHHHHHHHHHHHHcCCCcCCCC-HHHH---HHHHHHHHHHhccc
Confidence            6899999  8999999999999999999999964 5432   35999999997543

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.10  E-value=0.00043  Score=68.19  Aligned_cols=40  Identities=18%  Similarity=0.288  Sum_probs=32.3

Q ss_pred             cccccCCCceeecC--cccccCCCceeccceeEEEEEeCCcccC
Q 007833          460 PCAYVCANSRIYNA--TDWYICQGMRCPANTHKPSFHVNTSVTS  501 (588)
Q Consensus       460 ~C~y~C~GsGi~~~--~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d  501 (588)
                      +|| .|.|+|....  .+|+.|+|.|.+..+++..+++ +|+++
T Consensus       101 ~C~-~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~  142 (186)
T TIGR02642       101 KCP-RCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDS  142 (186)
T ss_pred             cCC-CCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccC
Confidence            466 6666665554  6799999999999999999999 88843

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.0012  Score=63.14  Aligned_cols=72  Identities=25%  Similarity=0.359  Sum_probs=58.0

Q ss_pred             hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          285 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG----N-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       285 l~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~----~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      ..+.+||+++|.......+++-++.-|.-...+.|||+...    + ..|.|.-.+|++||.+|.||-+|+.|=.-+
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl   81 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL   81 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34578999998876545667777778999999999999531    1 358889999999999999999999997543

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.42  E-value=0.0015  Score=73.31  Aligned_cols=69  Identities=19%  Similarity=0.436  Sum_probs=47.6

Q ss_pred             cccccccCccceeeeccCcccccccccccccccccCCCeeEEEeec-------cccceeEEEEEecccccCCCceee-cC
Q 007833          402 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSE-------PLFFGIFQKVDVPCAYVCANSRIY-NA  473 (588)
Q Consensus       402 v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q-------~~~~Gm~qq~q~~C~y~C~GsGi~-~~  473 (588)
                      ..|+.|+|.|      .-......|+.|+       |+|.+.....       .-..-++.....||+ .|.|.|.+ .-
T Consensus         3 ~~C~~C~g~G------~i~v~~e~c~vc~-------gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~-~c~gkG~V~v~   68 (715)
T COG1107           3 KKCPECGGKG------KIVVGEEECPVCH-------GTGFSDDFDPKGVANLSRETVDLFASFEIPCP-KCRGKGTVTVY   68 (715)
T ss_pred             ccccccCCCc------eEeeeeeeccccc-------ccccccccChhhhhhhhhccccccccCCCCCC-eeccceeEEEE
Confidence            4699999987      3334456799998       9997733110       111223445577999 89998854 66


Q ss_pred             cccccCCCcee
Q 007833          474 TDWYICQGMRC  484 (588)
Q Consensus       474 ~~C~~C~G~G~  484 (588)
                      .+|..|.|.|.
T Consensus        69 ~~c~~c~G~gk   79 (715)
T COG1107          69 DTCPECGGTGK   79 (715)
T ss_pred             eecccCCCcee
Confidence            89999999984

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.00  E-value=0.0083  Score=66.68  Aligned_cols=43  Identities=33%  Similarity=0.478  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCh-------HHHHHHHHHHHHHHHhh
Q 007833          302 VDVSILKREYRKKAMLVHPDKNMGNE-------KAVEAFKKLQNAYEVLF  344 (588)
Q Consensus       302 as~~eIKkAYRklalk~HPDkn~~~p-------~A~e~Fk~I~~AYevLs  344 (588)
                      .+.++|||+|||..|.+||||.++.+       -|++.|..+++|++...
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            57899999999999999999987642       26677888888887543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.0082  Score=58.37  Aligned_cols=54  Identities=35%  Similarity=0.538  Sum_probs=46.7

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------hHHHHHHHHHHHHHHHh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-------EKAVEAFKKLQNAYEVL  343 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-------p~A~e~Fk~I~~AYevL  343 (588)
                      .+.|.+|+++.  .++..+||++||++....|||+-..-       ..+.+++++|++||+-+
T Consensus       113 ~~~l~~l~~~~--~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEI--KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCch--hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            58999999999  88999999999999999999986321       34889999999999743

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.0099  Score=57.80  Aligned_cols=67  Identities=28%  Similarity=0.415  Sum_probs=52.0

Q ss_pred             CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833          289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDE  355 (588)
Q Consensus       289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~  355 (588)
                      |+....|.++....+.+.++..|+.+.+.+|||+....+.     +-+.+..++.||.+|.||-+|..|=-.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la   73 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA   73 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3455556665333456778999999999999999865433     336799999999999999999999643

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.025  Score=61.22  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=31.8

Q ss_pred             cccccccccCccceeeec--cCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCcee
Q 007833          400 RRIACKKCNNFHVWIETK--KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI  470 (588)
Q Consensus       400 r~v~C~kC~GsG~~~~t~--k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi  470 (588)
                      ....|++|+|+|......  ..-....+|+.|+       |+|.+.              ..||+ .|.|.|.
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~-------G~G~~i--------------~~pC~-~C~G~G~  208 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN-------GTGKII--------------KDPCG-KCKGKGR  208 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc-------cceeEC--------------CCCCC-CCCCCCe
Confidence            556899999888533222  1123457788888       888443              23688 8888774

>PRK14282 chaperone protein DnaJ; Provisional

Probab=93.85  E-value=0.16  Score=55.12  Aligned_cols=26  Identities=8%  Similarity=0.066  Sum_probs=18.8

Q ss_pred             ceeEEEEEeCCcccCCC-CccccCCCC
Q 007833          487 NTHKPSFHVNTSVTSKH-NTSKGTSSG  512 (588)
Q Consensus       487 ~t~~v~V~Vp~Gv~d~~-~r~~g~g~~  512 (588)
                      +.+.++|+||+|+.+++ .+++|.|-.
T Consensus       301 dG~~i~v~Ip~g~~~g~~iri~GkG~p  327 (369)
T PRK14282        301 EGGTTMLKIPPGTQPETVFRLKGKGLP  327 (369)
T ss_pred             CCcEEEEEeCCCcCCCCEEEECCCCCC
Confidence            34678999999998884 466666543

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=0.037  Score=58.47  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=19.4

Q ss_pred             cccccCCCceeecCcccccCCCceeccceeEEEEEeC
Q 007833          460 PCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN  496 (588)
Q Consensus       460 ~C~y~C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp  496 (588)
                      +|+ +|.|.|.   .+|.+|.|.|-..+-.++-|.-.
T Consensus       247 ~C~-tC~grG~---k~C~TC~gtgsll~~t~~vV~wK  279 (406)
T KOG2813|consen  247 ECH-TCKGRGK---KPCTTCSGTGSLLNYTRIVVYWK  279 (406)
T ss_pred             cCC-cccCCCC---cccccccCccceeeeEEEEEEee
Confidence            355 4555543   56777777776666555555554

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.38  E-value=0.096  Score=55.42  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             EecccccCCCceeecCcccccCCCceec
Q 007833          458 DVPCAYVCANSRIYNATDWYICQGMRCP  485 (588)
Q Consensus       458 q~~C~y~C~GsGi~~~~~C~~C~G~G~~  485 (588)
                      ...|. .|+|.|+   .+|.+|+|.|..
T Consensus       234 ~~~C~-~C~G~G~---~~C~tC~grG~k  257 (406)
T KOG2813|consen  234 HDLCY-MCHGRGI---KECHTCKGRGKK  257 (406)
T ss_pred             cchhh-hccCCCc---ccCCcccCCCCc
Confidence            34576 8999887   789999999853

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=93.25  E-value=0.024  Score=59.02  Aligned_cols=31  Identities=29%  Similarity=0.849  Sum_probs=0.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhh--------hhhhhHHHH
Q 007833          128 AFFIGFALALVVVALSGTILLWLY--------GSFWTTFFV  160 (588)
Q Consensus       128 ~~~~g~~~~~~iv~~~~~~~~w~~--------~~f~~~~~~  160 (588)
                      +.|+|...-++++-+  ++..|+|        +|||++..+
T Consensus       104 ~LF~Gi~~l~l~~lL--aL~vW~Ym~lLr~~GAs~WtiLaF  142 (381)
T PF05297_consen  104 TLFVGIVILFLCCLL--ALGVWFYMWLLRELGASFWTILAF  142 (381)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHH
Confidence            356666555555443  5555666        577775544

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=92.81  E-value=0.086  Score=43.34  Aligned_cols=50  Identities=22%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             ccccccccccCccceeeecc----CcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCce
Q 007833          399 SRRIACKKCNNFHVWIETKK----SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSR  469 (588)
Q Consensus       399 sr~v~C~kC~GsG~~~~t~k----~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsG  469 (588)
                      .....|+.|+|+|......+    .-.....|+.|+       |+|.+. .            ..+|+ .|.|.|
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~-------G~G~~i-~------------~~~C~-~C~G~g   66 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCG-------GTGKII-E------------KDPCK-TCKGSG   66 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTS-------SSSEE--T------------SSB-S-SSTTSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCc-------ceeeEE-C------------CCCCC-CCCCcC
Confidence            34568999999996544332    122456799999       999664 1            23799 899875

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=91.54  E-value=0.13  Score=56.28  Aligned_cols=23  Identities=9%  Similarity=0.042  Sum_probs=16.7

Q ss_pred             EEEEEeCCcccCC-CCccccCCCC
Q 007833          490 KPSFHVNTSVTSK-HNTSKGTSSG  512 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~-~~r~~g~g~~  512 (588)
                      +++|+||+|+.++ ..+++|.|-.
T Consensus       320 ~i~v~Ip~g~~~g~~iri~g~G~p  343 (392)
T PRK14279        320 PVGVKVPAGTADGRILRVRGRGVP  343 (392)
T ss_pred             eEEEEECCCCCCCCEEEECCCCCC
Confidence            4899999999887 4456666544

>PRK14300 chaperone protein DnaJ; Provisional

Probab=91.10  E-value=0.14  Score=55.49  Aligned_cols=25  Identities=4%  Similarity=0.042  Sum_probs=18.3

Q ss_pred             eeEEEEEeCCcccCC-CCccccCCCC
Q 007833          488 THKPSFHVNTSVTSK-HNTSKGTSSG  512 (588)
Q Consensus       488 t~~v~V~Vp~Gv~d~-~~r~~g~g~~  512 (588)
                      .+.++|+||+|+.++ ..+++|.|-.
T Consensus       291 g~~i~v~Ip~g~~~g~~iri~g~G~p  316 (372)
T PRK14300        291 GGKVNLTIPAGTQNGDQLRLRSKGMS  316 (372)
T ss_pred             CCEEEEEECCccCCCcEEEECCCCCC
Confidence            367999999999887 4466655543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=90.94  E-value=0.21  Score=54.20  Aligned_cols=49  Identities=18%  Similarity=0.391  Sum_probs=28.5

Q ss_pred             ccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833          401 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY  471 (588)
Q Consensus       401 ~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~  471 (588)
                      ...|+.|+|+|.....-..-.....|+.|+       |.|.+..              .+|+ .|.|.|..
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v  207 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCH-------GRGKIIK--------------DPCK-KCHGQGRV  207 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCC-------CceeECC--------------CCCC-CCCCCceE
Confidence            357888988874221111111235788887       8885421              2587 78887643

>PRK14290 chaperone protein DnaJ; Provisional

Probab=90.57  E-value=1  Score=48.75  Aligned_cols=24  Identities=13%  Similarity=0.098  Sum_probs=17.6

Q ss_pred             eEEEEEeCCcccCC-CCccccCCCC
Q 007833          489 HKPSFHVNTSVTSK-HNTSKGTSSG  512 (588)
Q Consensus       489 ~~v~V~Vp~Gv~d~-~~r~~g~g~~  512 (588)
                      .+++|+||+|+.++ ..+++|.|-.
T Consensus       296 g~i~V~Ip~g~~~g~~iri~g~G~p  320 (365)
T PRK14290        296 EKYNLKIPEGTQPGEVLKIKGAGMP  320 (365)
T ss_pred             ceEEEEECCccCCCcEEEECCCCCC
Confidence            35899999999888 4466666544

>PRK14301 chaperone protein DnaJ; Provisional

Probab=90.46  E-value=0.18  Score=54.87  Aligned_cols=22  Identities=9%  Similarity=0.072  Sum_probs=16.3

Q ss_pred             EEEEeCCcccCC-CCccccCCCC
Q 007833          491 PSFHVNTSVTSK-HNTSKGTSSG  512 (588)
Q Consensus       491 v~V~Vp~Gv~d~-~~r~~g~g~~  512 (588)
                      ++|+||+|+.++ ..+++|.|-.
T Consensus       292 i~v~ip~g~~~g~~~ri~g~G~p  314 (373)
T PRK14301        292 VTLDIPKGTQSGEVFRLRGKGLP  314 (373)
T ss_pred             EEEEECCCcCCCcEEEEcCCCCC
Confidence            899999999887 4466666544

>PRK14286 chaperone protein DnaJ; Provisional

Probab=90.22  E-value=0.2  Score=54.35  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=17.2

Q ss_pred             eeEEEEEeCCcccCCC-CccccCCC
Q 007833          488 THKPSFHVNTSVTSKH-NTSKGTSS  511 (588)
Q Consensus       488 t~~v~V~Vp~Gv~d~~-~r~~g~g~  511 (588)
                      .+.++|+||+|+.+++ .+++|.|=
T Consensus       296 G~~i~v~ip~g~~~g~~~ri~G~G~  320 (372)
T PRK14286        296 GKKAKMKIPEGTESGQVFRLKGHGM  320 (372)
T ss_pred             CCEEEEEeCCccCCCcEEEECCCCC
Confidence            4568999999998873 45555544

>PRK14288 chaperone protein DnaJ; Provisional

Probab=89.83  E-value=0.21  Score=54.19  Aligned_cols=23  Identities=0%  Similarity=0.095  Sum_probs=16.4

Q ss_pred             eEEEEEeCCcccCCC-CccccCCC
Q 007833          489 HKPSFHVNTSVTSKH-NTSKGTSS  511 (588)
Q Consensus       489 ~~v~V~Vp~Gv~d~~-~r~~g~g~  511 (588)
                      +.++|+||+|+.+++ .+++|.|=
T Consensus       285 ~~l~i~i~~~~~~g~~~~i~g~G~  308 (369)
T PRK14288        285 DELELKIPRNARDRQTFAFRNEGV  308 (369)
T ss_pred             CEEEEEeCCCCCCCcEEEEcCCCC
Confidence            468999999998873 45555543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=89.75  E-value=0.24  Score=53.22  Aligned_cols=23  Identities=13%  Similarity=0.089  Sum_probs=16.5

Q ss_pred             EEEEEeCCcccCC-CCccccCCCC
Q 007833          490 KPSFHVNTSVTSK-HNTSKGTSSG  512 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~-~~r~~g~g~~  512 (588)
                      .++|+||+|+.++ ..+++|.|-.
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p  317 (354)
T TIGR02349       294 DVKLKIPAGTQSGTVFRLKGKGVP  317 (354)
T ss_pred             eEEEEECCcccCCcEEEECCCCcC
Confidence            5789999999887 3456655543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14295 chaperone protein DnaJ; Provisional

Probab=89.71  E-value=0.24  Score=54.10  Aligned_cols=25  Identities=4%  Similarity=0.041  Sum_probs=18.0

Q ss_pred             eeEEEEEeCCcccCCC-CccccCCCC
Q 007833          488 THKPSFHVNTSVTSKH-NTSKGTSSG  512 (588)
Q Consensus       488 t~~v~V~Vp~Gv~d~~-~r~~g~g~~  512 (588)
                      .+.++|+||+|+.+++ .+++|.|-.
T Consensus       312 G~~~~v~ip~g~~~g~~iri~G~G~p  337 (389)
T PRK14295        312 GPPVTVKLPPGTPNGRVLRVRGKGAV  337 (389)
T ss_pred             CCEEEEEECCccCCCcEEEECCCCcC
Confidence            4579999999998873 455655543

>PRK14294 chaperone protein DnaJ; Provisional

Probab=89.56  E-value=0.24  Score=53.67  Aligned_cols=34  Identities=9%  Similarity=-0.034  Sum_probs=20.8

Q ss_pred             EEEEeCCcccCC-CCccccCCCCCCCCCCCCCcccc
Q 007833          491 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE  525 (588)
Q Consensus       491 v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~  525 (588)
                      ++|+||+|+.++ ..+++|.|-...+++ ..+|+++
T Consensus       292 ~~v~ip~g~~~g~~iri~G~G~p~~~~~-~~GDL~V  326 (366)
T PRK14294        292 RELKIPKGTQPGDIFRFKGKGIPSLRGG-GRGDQII  326 (366)
T ss_pred             EEEEECCCcCCCCEEEECCCCCCCCCCC-CCCCEEE
Confidence            689999999888 446666665433332 2345444

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=89.40  E-value=0.27  Score=54.44  Aligned_cols=24  Identities=8%  Similarity=0.073  Sum_probs=15.6

Q ss_pred             ceeEEEEEeCCc--ccCCC-CccccCC
Q 007833          487 NTHKPSFHVNTS--VTSKH-NTSKGTS  510 (588)
Q Consensus       487 ~t~~v~V~Vp~G--v~d~~-~r~~g~g  510 (588)
                      ..+.+.|.||+|  +..+. .+++|.|
T Consensus       299 dG~~l~I~ip~g~vt~pg~~~~I~geG  325 (421)
T PTZ00037        299 DGRKLLVNTPPGEVVKPGDIKVINNEG  325 (421)
T ss_pred             CCCeEEEEeCCCcccCCCcEEEeCCCC
Confidence            345688999998  66663 3455544

>PRK14285 chaperone protein DnaJ; Provisional

Probab=89.38  E-value=0.23  Score=53.90  Aligned_cols=24  Identities=8%  Similarity=0.098  Sum_probs=16.0

Q ss_pred             eeEEEEEeCCcccCC-CCccccCCC
Q 007833          488 THKPSFHVNTSVTSK-HNTSKGTSS  511 (588)
Q Consensus       488 t~~v~V~Vp~Gv~d~-~~r~~g~g~  511 (588)
                      .+.++|+||+|+.++ ..+++|.|-
T Consensus       292 G~~v~V~Ip~g~~~g~~irl~GkG~  316 (365)
T PRK14285        292 SKKIKIKIPKGTENDEQIIIKNEGM  316 (365)
T ss_pred             CCEEEEEeCCCcCCCcEEEECCCCc
Confidence            356888889888777 335555544

>PRK14291 chaperone protein DnaJ; Provisional

Probab=89.23  E-value=0.29  Score=53.39  Aligned_cols=26  Identities=8%  Similarity=0.083  Sum_probs=18.2

Q ss_pred             eeEEEEEeCCcccCCC-CccccCCCCC
Q 007833          488 THKPSFHVNTSVTSKH-NTSKGTSSGQ  513 (588)
Q Consensus       488 t~~v~V~Vp~Gv~d~~-~r~~g~g~~~  513 (588)
                      .+.++|+||+|+.+++ .+++|.|-..
T Consensus       301 G~~l~V~Ip~g~~~G~~i~i~G~G~p~  327 (382)
T PRK14291        301 GKKEKVKIPPGTKEGDKIRVPGKGMPR  327 (382)
T ss_pred             CCEEEEEECCccCCCCEEEECCCCCCC
Confidence            4568999999998883 4555555443

>PRK14284 chaperone protein DnaJ; Provisional

Probab=89.15  E-value=0.22  Score=54.36  Aligned_cols=25  Identities=8%  Similarity=0.077  Sum_probs=18.2

Q ss_pred             eEEEEEeCCcccCCC-CccccCCCCC
Q 007833          489 HKPSFHVNTSVTSKH-NTSKGTSSGQ  513 (588)
Q Consensus       489 ~~v~V~Vp~Gv~d~~-~r~~g~g~~~  513 (588)
                      ..++|+||+|+.+++ .+++|.|-..
T Consensus       306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~  331 (391)
T PRK14284        306 GTCRLTIPEGIQSGTILKVRGQGFPN  331 (391)
T ss_pred             cEEEEEECCccCCCeEEEECCCCCCC
Confidence            578999999998883 4666655443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=88.90  E-value=0.31  Score=53.05  Aligned_cols=20  Identities=10%  Similarity=0.129  Sum_probs=12.7

Q ss_pred             EEEEeCCcccCC-CCccccCC
Q 007833          491 PSFHVNTSVTSK-HNTSKGTS  510 (588)
Q Consensus       491 v~V~Vp~Gv~d~-~~r~~g~g  510 (588)
                      ++|+||+|+..+ ..+++|.|
T Consensus       302 ~~v~ip~~t~~g~~~ri~GkG  322 (372)
T PRK14296        302 IKYKLPKSINSNELIIINNKG  322 (372)
T ss_pred             EEEEECCccCCCcEEEEcCCC
Confidence            677888887766 33444444

>PRK14276 chaperone protein DnaJ; Provisional

Probab=88.87  E-value=0.31  Score=53.10  Aligned_cols=12  Identities=33%  Similarity=0.797  Sum_probs=7.9

Q ss_pred             ccccccccCccc
Q 007833          401 RIACKKCNNFHV  412 (588)
Q Consensus       401 ~v~C~kC~GsG~  412 (588)
                      ...|+.|+|+|.
T Consensus       163 ~~~C~~C~G~G~  174 (380)
T PRK14276        163 PVTCGKCHGSGV  174 (380)
T ss_pred             CccCCCCCCeeE
Confidence            346777777764

>PRK14277 chaperone protein DnaJ; Provisional

Probab=88.39  E-value=0.39  Score=52.43  Aligned_cols=49  Identities=20%  Similarity=0.546  Sum_probs=27.2

Q ss_pred             ccccccccCccceeeeccC----cccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833          401 RIACKKCNNFHVWIETKKS----KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY  471 (588)
Q Consensus       401 ~v~C~kC~GsG~~~~t~k~----~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~  471 (588)
                      ...|+.|+|+|........    -.....|+.|+       |+|.+..              .+|. .|.|.|+.
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v  224 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCH-------GEGKIIT--------------DPCN-KCGGTGRI  224 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCC-------cceeecc--------------CCCC-CCCCCcEE
Confidence            4568888888742211110    01235788887       7775421              2577 77776643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=88.33  E-value=0.33  Score=52.85  Aligned_cols=25  Identities=8%  Similarity=0.072  Sum_probs=18.0

Q ss_pred             eeEEEEEeCCcccCCC-CccccCCCC
Q 007833          488 THKPSFHVNTSVTSKH-NTSKGTSSG  512 (588)
Q Consensus       488 t~~v~V~Vp~Gv~d~~-~r~~g~g~~  512 (588)
                      ...++|.||+|+.+++ .+++|.|-.
T Consensus       289 ~~~i~v~ip~g~~~g~~lrl~g~G~p  314 (378)
T PRK14278        289 DGPSEITIPPGTQPGSVITLRGRGMP  314 (378)
T ss_pred             CCeEEEEeCCCcCCCcEEEECCCCCC
Confidence            5678999999998874 456655543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=88.32  E-value=0.26  Score=53.69  Aligned_cols=21  Identities=5%  Similarity=0.045  Sum_probs=15.3

Q ss_pred             EEEEeCCcccCCC-CccccCCC
Q 007833          491 PSFHVNTSVTSKH-NTSKGTSS  511 (588)
Q Consensus       491 v~V~Vp~Gv~d~~-~r~~g~g~  511 (588)
                      ++|.||+|+.+++ .+++|.|-
T Consensus       293 i~v~ip~g~~~g~~lri~g~G~  314 (377)
T PRK14298        293 VKMNIPPGTQTHSVFRLKDKGM  314 (377)
T ss_pred             EEEEeCCCcccCCEEEECCCCC
Confidence            7899999998873 45555554

>PRK14280 chaperone protein DnaJ; Provisional

Probab=87.76  E-value=0.39  Score=52.24  Aligned_cols=22  Identities=14%  Similarity=0.173  Sum_probs=15.9

Q ss_pred             EEEEEeCCcccCCC-CccccCCC
Q 007833          490 KPSFHVNTSVTSKH-NTSKGTSS  511 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~~-~r~~g~g~  511 (588)
                      +++|+||+|+.+++ .+++|.|-
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~  316 (376)
T PRK14280        294 KVKLKIPAGTQTGTQFRLKGKGV  316 (376)
T ss_pred             eEEEEECCCCCCCcEEEEcCCCC
Confidence            37899999998873 45555554

>PRK14281 chaperone protein DnaJ; Provisional

Probab=87.50  E-value=0.41  Score=52.46  Aligned_cols=22  Identities=5%  Similarity=0.045  Sum_probs=16.0

Q ss_pred             EEEEEeCCcccCC-CCccccCCC
Q 007833          490 KPSFHVNTSVTSK-HNTSKGTSS  511 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~-~~r~~g~g~  511 (588)
                      +++|+||+|+.++ ..+++|.|=
T Consensus       313 ~i~v~ip~g~~~G~~~ri~g~G~  335 (397)
T PRK14281        313 AVKLTIPAGTQPETMLRIPGKGI  335 (397)
T ss_pred             cEEEEeCCccCCCcEEEEcCCCC
Confidence            4789999999888 445555554

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=87.23  E-value=1.2  Score=41.76  Aligned_cols=51  Identities=16%  Similarity=0.129  Sum_probs=35.4

Q ss_pred             ccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcc
Q 007833          291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF  347 (588)
Q Consensus       291 Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~  347 (588)
                      ..||||++  ..+.++|.+.|.+|-...+|++... .--   =.+|..|.|.|..+-
T Consensus        61 ~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGGS-fYL---QSKV~rAKErl~~El  111 (127)
T PF03656_consen   61 RQILNVKE--ELSREEIQKRYKHLFKANDPSKGGS-FYL---QSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHT--G----SHHHHHHHHHHHHHHT-CCCTS--HHH---HHHHHHHHHHHHHHH
T ss_pred             HHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCCC-HHH---HHHHHHHHHHHHHHH
Confidence            47899999  8899999999999999999998853 222   235788888886443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=87.15  E-value=0.36  Score=52.66  Aligned_cols=23  Identities=4%  Similarity=0.020  Sum_probs=16.6

Q ss_pred             EEEEEeCCcccCC-CCccccCCCC
Q 007833          490 KPSFHVNTSVTSK-HNTSKGTSSG  512 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~-~~r~~g~g~~  512 (588)
                      +++|.||+|+.++ ..+++|.|-.
T Consensus       305 ~i~v~ip~g~~~g~~~ri~g~G~p  328 (386)
T PRK14289        305 KAKVKIEAGTQPGKVLRLRNKGLP  328 (386)
T ss_pred             eEEEEECCccCCCcEEEECCCCcC
Confidence            4899999999887 4456555543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=86.77  E-value=0.56  Score=51.03  Aligned_cols=50  Identities=18%  Similarity=0.547  Sum_probs=31.0

Q ss_pred             cccccccccCccceeeecc----CcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833          400 RRIACKKCNNFHVWIETKK----SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY  471 (588)
Q Consensus       400 r~v~C~kC~GsG~~~~t~k----~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~  471 (588)
                      ....|+.|+|+|.......    .-.....|+.|+       |+|...              ..+|. .|.|.|+.
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~-------G~G~~~--------------~~~C~-~C~G~g~v  215 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQ-------GEGKIV--------------EKPCS-NCHGKGVV  215 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCC-------ccceec--------------CCCCC-CCCCceee
Confidence            3457999999884321111    011346899998       888542              23588 88887754

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=86.69  E-value=0.37  Score=54.84  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             CcccccccccccCccceeeeccCcccccccccccccccccCCCeeEE
Q 007833          397 GESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVE  443 (588)
Q Consensus       397 ~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve  443 (588)
                      ..++.++|++|+|.|.       -.....|+.|+       |+|.+.
T Consensus        49 ~~~~~~pc~~c~gkG~-------V~v~~~c~~c~-------G~gkv~   81 (715)
T COG1107          49 FASFEIPCPKCRGKGT-------VTVYDTCPECG-------GTGKVL   81 (715)
T ss_pred             cccCCCCCCeecccee-------EEEEeecccCC-------CceeEE
Confidence            3566788999988761       12346788998       888653

>PRK14287 chaperone protein DnaJ; Provisional

Probab=86.67  E-value=0.48  Score=51.49  Aligned_cols=48  Identities=21%  Similarity=0.517  Sum_probs=26.8

Q ss_pred             ccccccccCccceeeeccCc----ccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCcee
Q 007833          401 RIACKKCNNFHVWIETKKSK----ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI  470 (588)
Q Consensus       401 ~v~C~kC~GsG~~~~t~k~~----~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi  470 (588)
                      ...|+.|+|+|.....-+..    .....|+.|+       |+|.+..              .+|+ .|.|.+.
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~  206 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCE-------GTGKIIK--------------QKCA-TCGGKGK  206 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCC-------CCCcccc--------------ccCC-CCCCeeE
Confidence            35688888887432211100    1235788887       7775421              2477 6777653

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=86.39  E-value=0.36  Score=47.87  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=24.8

Q ss_pred             ccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEe
Q 007833          399 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQS  445 (588)
Q Consensus       399 sr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~  445 (588)
                      .+...|+.|+|+|..+      .....|+.|+       |+|.+...
T Consensus        97 ~~~~~C~~C~G~G~~i------~~~~~C~~C~-------G~G~v~~~  130 (186)
T TIGR02642        97 LNSCKCPRCRGTGLIQ------RRQRECDTCA-------GTGRFRPT  130 (186)
T ss_pred             HcCCcCCCCCCeeEEe------cCCCCCCCCC-------CccEEeee
Confidence            4477899999998322      1125799999       99988663

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=85.74  E-value=0.59  Score=50.78  Aligned_cols=21  Identities=5%  Similarity=0.018  Sum_probs=15.0

Q ss_pred             EEEEeCCcccCC-CCccccCCC
Q 007833          491 PSFHVNTSVTSK-HNTSKGTSS  511 (588)
Q Consensus       491 v~V~Vp~Gv~d~-~~r~~g~g~  511 (588)
                      ++|+||+|+.++ ..+++|.|=
T Consensus       295 ~~i~ip~~~~~g~~~ri~g~G~  316 (374)
T PRK14293        295 VELTIPAGTQPNTVLTLENKGV  316 (374)
T ss_pred             EEEEeCCCCCCCCEEEECCCCC
Confidence            788999998777 445655554

>PRK14297 chaperone protein DnaJ; Provisional

Probab=85.63  E-value=0.56  Score=51.06  Aligned_cols=23  Identities=13%  Similarity=0.144  Sum_probs=16.4

Q ss_pred             EEEEEeCCcccCCC-CccccCCCC
Q 007833          490 KPSFHVNTSVTSKH-NTSKGTSSG  512 (588)
Q Consensus       490 ~v~V~Vp~Gv~d~~-~r~~g~g~~  512 (588)
                      +++|.||+|+.+++ .+++|.|-.
T Consensus       299 ~~~v~ip~g~~~g~~~ri~g~G~p  322 (380)
T PRK14297        299 EVKYEVPAGTQPGTVFRLKGKGVP  322 (380)
T ss_pred             cEEEEECCCcCCCCEEEEcCCCcC
Confidence            37899999998874 456655543

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=85.42  E-value=0.79  Score=41.92  Aligned_cols=44  Identities=23%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             ccccccCccceeeeccC-cccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee
Q 007833          403 ACKKCNNFHVWIETKKS-KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY  471 (588)
Q Consensus       403 ~C~kC~GsG~~~~t~k~-~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~  471 (588)
                      .|+.|+|+|.....-.. ......|+.|+       |+|.+                 +|. .|.|.|..
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~-------G~Gk~-----------------~C~-~C~G~G~~   98 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCD-------GAGSL-----------------TCT-TCQGSGIQ   98 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCC-------Cccee-----------------eCC-CCCCCEEE
Confidence            89999999964432211 12356899999       99931                 388 89998864

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=83.94  E-value=1  Score=47.86  Aligned_cols=55  Identities=29%  Similarity=0.318  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          302 VDVSILKREYRKKAMLVHPDKNMG----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       302 as~~eIKkAYRklalk~HPDkn~~----~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      ++..+|..+|+..++..|||+-..    .-.-++.|+.|.+||++|.+.++|..+|+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            567899999999999999999841    1235677999999999999987777777653

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=82.61  E-value=0.91  Score=53.46  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=43.9

Q ss_pred             CCCceeccceeEEEEEeCCcccCC-CCccccCCCCCCCCCCCCCccccCC--ChhHHHHH------------HHHHHHhc
Q 007833          479 CQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW------------LQNAVQAG  543 (588)
Q Consensus       479 C~G~G~~~~t~~v~V~Vp~Gv~d~-~~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w------------l~~~~~~~  543 (588)
                      |.|.......+.++|+||+|+.+| ..+.+|.|..+  ++++ +|++..+  .+|++|.+            |.+|+-.+
T Consensus       687 g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDeg--pgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGg  763 (871)
T TIGR03835       687 GNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDF--GNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGG  763 (871)
T ss_pred             CCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCC--CCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCC
Confidence            455556777889999999999888 44666666643  3334 5555555  88888887            56666555


Q ss_pred             cc
Q 007833          544 LF  545 (588)
Q Consensus       544 ~f  545 (588)
                      -+
T Consensus       764 tI  765 (871)
T TIGR03835       764 II  765 (871)
T ss_pred             EE
Confidence            43

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=80.09  E-value=1.3  Score=48.16  Aligned_cols=22  Identities=9%  Similarity=0.148  Sum_probs=15.1

Q ss_pred             EEEEeCCcccCCC-CccccCCCC
Q 007833          491 PSFHVNTSVTSKH-NTSKGTSSG  512 (588)
Q Consensus       491 v~V~Vp~Gv~d~~-~r~~g~g~~  512 (588)
                      .+|+||+|+.+++ .+++|.|-.
T Consensus       290 ~~v~ip~g~~~g~~~~i~g~G~p  312 (371)
T PRK14292        290 QVIEVKPGTQHGDLHRLRGQGMP  312 (371)
T ss_pred             EEEecCCCcCCCcEEEECCCCCC
Confidence            4799999998874 355555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	588
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-09
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		4e-09
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-09
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-07
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		8e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		9e-07
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		1e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-06
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		5e-06
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		6e-06
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-05
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-05
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		4e-05
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		5e-05
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-04
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		3e-04
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		6e-04

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+    +   +++ Y++ AM  HPD+N G+++A   FK+++ AYEVL DS K
Sbjct: 4   DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 349 RKAYD 353
           R AYD
Sbjct: 62  RAAYD 66

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+    +   +++ Y++ AM  HPD+N G+++A   FK+++ AYEVL DS K
Sbjct: 4   DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 349 RKAYD 353
           R AYD
Sbjct: 62  RAAYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+    +   +++ Y++ AM  HPD+N G+++A   FK+++ AYEVL DS K
Sbjct: 4   DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 349 RKAYD 353
           R AYD
Sbjct: 62  RAAYD 66

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350
           Y  LGL +  N     +K+ YRK A+  HPDKN  N +A + FK++ NA+ +L D+ KR 
Sbjct: 20  YHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 351 AYD 353
            YD
Sbjct: 78  IYD 80

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  N     +K+ Y + A   HPD N  + KA E F +L  AYEVL D  K
Sbjct: 8   DYYQILGVPR--NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 349 RKAYD 353
           RK YD
Sbjct: 66  RKQYD 70

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 23/103 (22%)
Query: 290 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFK 348
           +Y  L + R  + D   +K+ YR+KA+  HPDKN  N E A + FK++  AYEVL D  K
Sbjct: 4   YYEILDVPRSASAD--DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEAD 391
           R+ YD                    + GR G  G+G   S A+
Sbjct: 62  REIYD--------------------RYGREGLTGTGTGPSRAE 84

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LGL+R        +KR YR++A+  HPDKN     A E FK++  AY+VL D  K
Sbjct: 4   DYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60
Query: 349 RKAYD 353
           R+ +D
Sbjct: 61  REIFD 65

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 283 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEV 342
           R  +  D+Y+ LG     +V+  IL  E++ +A+  HPDK+  N KAVE F+KLQ A E+
Sbjct: 15  RSEDTEDYYTLLGCDELSSVE-QILA-EFKVRALECHPDKHPENPKAVETFQKLQKAKEI 72
Query: 343 LFDSFKRKAYDDELRREELLDYFRRFQS 370
           L +   R  Y D  RR ++   F+++++
Sbjct: 73  LTNEESRARY-DHWRRSQMSMPFQQWEA 99

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           T +Y  LG+    N     LK+ YRK A+  HPDKN  NE   E FK++  AYEVL D+ 
Sbjct: 6   TTYYDVLGVK--PNATQEELKKAYRKLALKYHPDKN-PNEG--EKFKQISQAYEVLSDAK 60
Query: 348 KRKAYD 353
           KR+ YD
Sbjct: 61  KRELYD 66

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+SR        LK+ YR+ A+  HPDKN     A EAFK +  AY VL +  K
Sbjct: 8   DYYEILGVSR--GASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEK 64
Query: 349 RKAYD 353
           RK YD
Sbjct: 65  RKQYD 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           T +Y  LG+    +   + LK+ YRK A+  HPDKN       E FK++  AYEVL D  
Sbjct: 8   TGYYDVLGVK--PDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDEK 62
Query: 348 KRKAYD 353
           KR+ YD
Sbjct: 63  KRQIYD 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSF 347
           D+Y  L + R        +K+ YRK A+  HPDKN  N E+A   FK++  AYEVL D+ 
Sbjct: 10  DYYEVLDVPR--QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 348 KRKAYD 353
           KR  YD
Sbjct: 68  KRDIYD 73

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSF 347
           ++Y  LG+    +     +K+ YRK A+  HPDKN  N E+A + FK +  AYEVL DS 
Sbjct: 10  NYYEVLGVQ--ASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 348 KRKAYD 353
           KR  YD
Sbjct: 68  KRSLYD 73

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350
           YS LG+S+        +++ ++K A+ +HPDKN  N  A   F K+  AYEVL D   RK
Sbjct: 24  YSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 351 AYD 353
            YD
Sbjct: 82  KYD 84

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           T  Y  LG+S   N     LK+ YRK A+  HPDK  G+    E FK++  A+E+L D  
Sbjct: 8   TKLYDLLGVSPSANEQE--LKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQ 62
Query: 348 KRKAYD 353
           KR+ YD
Sbjct: 63  KREIYD 68

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEV 342
           D YS LG     + ++S LK++Y+K  ++ HPDK   +      E+ V+ F ++  A+++
Sbjct: 11  DWYSILGAD--PSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 343 LFDSFKRKAYD-----DELRREELLDYFRRFQSASQKNGRHGFF-----GSGYARSEADC 392
           L +   ++ YD     D+LR    +D     +  S   G H F+     G  Y+ S+ + 
Sbjct: 69  LGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEA 128
Query: 393 DDPFGESRRIACKKCN 408
           +    E   I+C  C+
Sbjct: 129 E----EVSLISCDTCS 140

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 291 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 350
           YS LG+S+        +++ ++K A+ +HPDKN  N  A   F K+  AYEVL D   RK
Sbjct: 5   YSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 351 AYD 353
            YD
Sbjct: 63  KYD 65

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 307 LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL 362
           +K  Y ++  L HPD+N G+ +A E F ++  AY VL  +  R+ YD  L  +E L
Sbjct: 34  IKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDL 89

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 285 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 344
           +   D+Y+ LG+   +  D+  +K  YR+ A   HPD +  N+ A   FK L  A+EVL 
Sbjct: 25  MELKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAWEVLK 81
Query: 345 DSFKRKAYDDELRREELLDYFRRFQSASQKNGRHGF 380
           D  +R  YD   +      + R+ Q+  Q   +  F
Sbjct: 82  DEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDF 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	588
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	7e-21
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	8e-21
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	5e-20
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	7e-19
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-18
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	4e-18
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-18
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-17
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-17
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-17
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-17
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-17
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-17
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	7e-17
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-16
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-16
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	7e-16
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-15
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-15
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-15
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-15
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-15
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	7e-15
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	7e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-13
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	5e-12
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	6e-12
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-10
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	4e-07
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-06
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-05

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 86.3 bits (214), Expect = 7e-21
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 264 GVPSTSGDDSEMTSE--DEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPD 321
           G   +SG  +  T E  D + R+ N  D +  LG+          + + YRK A+L+HPD
Sbjct: 1   GSSGSSGSSASFTKEQADAIRRIRNSKDSWDMLGVKP--GASRDEVNKAYRKLAVLLHPD 58

Query: 322 KNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYD 353
           K      + +AFK + NA   L  + K     
Sbjct: 59  KC-VAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 86.7 bits (215), Expect = 8e-21
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y+ LG        V  +  E++ +A+  HPDK+  N KAVE F+KLQ A E+L +   
Sbjct: 21  DYYTLLGCDE--LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFG 382
           R  Y D  RR ++   F+++++ +      G   
Sbjct: 79  RARY-DHWRRSQMSMPFQQWEALNDSVKTSGPSS 111

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 84.2 bits (209), Expect = 5e-20
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 16/111 (14%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+    +   +++ Y++ AM  HPD+N G+++A   FK+++ AYEVL DS K
Sbjct: 4   DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADC-DDPFGE 398
           R AYD             ++  A+ + G  G  G G     +D   D FG+
Sbjct: 62  RAAYD-------------QYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGD 99

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 80.9 bits (200), Expect = 7e-19
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           T  Y  LG+        + +K  Y ++  L HPD+N G+ +A E F ++  AY VL  + 
Sbjct: 17  TALYDLLGVPS--TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74

Query: 348 KRKAYD 353
            R+ YD
Sbjct: 75  LRRKYD 80

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 78.4 bits (194), Expect = 3e-18
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+ R  N     +K+ Y + A   HPD N  + KA E F +L  AYEVL D  K
Sbjct: 8   DYYQILGVPR--NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65

Query: 349 RKAYD 353
           RK YD
Sbjct: 66  RKQYD 70

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 79.5 bits (196), Expect = 4e-18
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
                 LGL R    ++ ++++ Y KK    HPDK  G+E   E  KK+   Y+ + D  
Sbjct: 8   LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDE---EKMKKMNTLYKKMEDGV 63

Query: 348 KRKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFG 397
           K              D+   + +          +   +  +  + ++ F 
Sbjct: 64  KYAHQP---------DFGGFWDATEIPTYGTDEWEQWW--NAFNEENLFC 102

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 79.4 bits (196), Expect = 4e-18
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
             Y  LGL +  N     +K+ YRK A+  HPDKN  N +A + FK++ NA+ +L D+ K
Sbjct: 18  SLYHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75

Query: 349 RKAYD 353
           R  YD
Sbjct: 76  RNIYD 80

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           + YS LG+S+        +++ ++K A+ +HPDKN  N  A   F K+  AYEVL D   
Sbjct: 3   NFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 60

Query: 349 RKAYDDELRREELLDYFRRF-QSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKC 407
           RK YD             ++ +   + N    +    Y R +    D   E   +  ++ 
Sbjct: 61  RKKYD-------------KYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREF 107

Query: 408 NNFHVWIETKKSKASARWCQEC 429
           +      E       +  C  C
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHC 129

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 79.5 bits (196), Expect = 1e-17
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 22/135 (16%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEV 342
           D YS LG     + ++S LK++Y+K  ++ HPDK   +      E+ V+ F ++  A+++
Sbjct: 11  DWYSILGADP--SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68

Query: 343 LFDSFKRKAYD-----DELRREELLDYFRRFQSASQKNGRHGF-----FGSGYARSEADC 392
           L +   ++ YD     D+LR    +D     +  S   G H F      G  Y+ S+   
Sbjct: 69  LGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSK--- 125

Query: 393 DDPFGESRRIACKKC 407
            D   E   I+C  C
Sbjct: 126 -DEAEEVSLISCDTC 139

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEA-FKKLQNAYEVLFDSF 347
           D+Y  L + R        +K+ YRK A+  HPDKN  N++  E  FK++  AYEVL D+ 
Sbjct: 10  DYYEVLDVPR--QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 67

Query: 348 KRKAYD 353
           KR  YD
Sbjct: 68  KRDIYD 73

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEA-FKKLQNAYEVLFDSF 347
            +Y  L + R  +     +K+ YR+KA+  HPDKN  N++  E  FK++  AYEVL D  
Sbjct: 3   SYYEILDVPR--SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60

Query: 348 KRKAYD 353
           KR+ YD
Sbjct: 61  KREIYD 66

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEA-FKKLQNAYEVLFDSF 347
           ++Y  LG+    +     +K+ YRK A+  HPDKN  N++  E  FK +  AYEVL DS 
Sbjct: 10  NYYEVLGVQA--SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67

Query: 348 KRKAYD 353
           KR  YD
Sbjct: 68  KRSLYD 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEA---FKKLQNAYEVLFD 345
           + Y  L ++R E  D   L + YR  A   HPD+    E+ + A   F+ +  AYE L D
Sbjct: 16  NCYDVLEVNR-EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74

Query: 346 SFKRKAYDD-----ELRREELLDYFRRFQS 370
              +  YD      + R      Y+R   +
Sbjct: 75  DEAKTNYDYYLDHPDQRFYNYYQYYRLRAA 104

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 75.2 bits (185), Expect = 7e-17
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 13/91 (14%)

Query: 269 SGDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-- 326
           S   S M  E  + +     D YS LG     + ++S LK++Y+K  +L HPDK   +  
Sbjct: 2   SSGSSGMALEQTLKK-----DWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVP 54

Query: 327 ----EKAVEAFKKLQNAYEVLFDSFKRKAYD 353
               E+ ++ F ++  A+++L +   +K YD
Sbjct: 55  AGTMEECMQKFIEIDQAWKILGNEETKKKYD 85

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           T  Y  LG+S   + +   LK+ YRK A+  HPDK  G+    E FK++  A+E+L D  
Sbjct: 8   TKLYDLLGVSP--SANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQ 62

Query: 348 KRKAYD 353
           KR+ YD
Sbjct: 63  KREIYD 68

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 73.0 bits (180), Expect = 2e-16
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LGL+R        +KR YR++A+  HPDKN     A E FK++  AY+VL D  K
Sbjct: 4   DYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 349 RKAYD 353
           R+ +D
Sbjct: 61  REIFD 65

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 72.7 bits (179), Expect = 3e-16
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 347
           T +Y  LG+    +   + LK+ YRK A+  HPDKN       E FK++  AYEVL D  
Sbjct: 8   TGYYDVLGVKP--DASDNELKKAYRKMALKFHPDKNPDGA---EQFKQISQAYEVLSDEK 62

Query: 348 KRKAYD 353
           KR+ YD
Sbjct: 63  KRQIYD 68

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+SR        LK+ YR+ A+  HPDKN     A EAFK +  AY VL +  K
Sbjct: 8   DYYEILGVSR--GASDEDLKKAYRRLALKFHPDKNHAPG-ATEAFKAIGTAYAVLSNPEK 64

Query: 349 RKAYD 353
           RK YD
Sbjct: 65  RKQYD 69

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y+ LG+      D+  +K  YR+ A   HPD +  N+ A   FK L  A+EVL D  +
Sbjct: 29  DYYAILGVQP--TDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAWEVLKDEQR 85

Query: 349 RKAYDDELRREELLDYFRRF-QSASQKNGRHGFFGSGYARSEADCDDPFGE 398
           R  YD             +  Q  +             + S+ D DD F  
Sbjct: 86  RAEYD-------------QLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSS 123

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSF 347
           +  S +  +    +  S  K+  R+  +  HPDKN  N + A E FK LQN    L    
Sbjct: 17  EVTSVVEQAW--KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---E 71

Query: 348 KRKAYD 353
           K+   D
Sbjct: 72  KQAFLD 77

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 73.8 bits (181), Expect = 2e-15
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 19/146 (13%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
                LGL R    ++ ++++ Y KK    HPDK  G+E   E  KK+   Y+ + D  K
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDE---EKMKKMNTLYKKMEDGVK 67

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKC- 407
                D     +  + F    +            + Y +   +C      S    C  C 
Sbjct: 68  YAHQPDFGGFWDATEVFASSLN--------PGVDAIYCKQWPECVK--KMSTNCICLLCL 117

Query: 408 -NNFHVWIETKKSKASAR---WCQEC 429
               H   +  +         +C +C
Sbjct: 118 LRMKHENRKLYRKDPLVWVDCYCFDC 143

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
            +Y  LG+ +  +     +K+ + K AM  HPDKN  +  A   F+++  AYE L D+ +
Sbjct: 8   SYYDILGVPK--SASERQIKKAFHKLAMKYHPDKN-KSPDAEAKFREIAEAYETLSDANR 64

Query: 349 RKAYD 353
           RK YD
Sbjct: 65  RKEYD 69

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D Y  LG+SR      + +K+ Y+K A   HPDKN  +  A + F ++  AYE+L +  K
Sbjct: 18  DPYRVLGVSR--TASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEK 74

Query: 349 RKAYD 353
           R  YD
Sbjct: 75  RTNYD 79

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 71.9 bits (176), Expect = 7e-15
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-----EKAVEAFKKLQNAYEVL 343
           D+++  GL     +D   L   ++      HPDK           AV+    +  A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 344 FDSFKRKAYDDELRREEL 361
                R  Y   L   +L
Sbjct: 62  RHPLMRAEYLLSLHGFDL 79

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 71.7 bits (175), Expect = 3e-13
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           + YS LG+S+        +++ ++K A+ +HPDKN  N  A   F K+  AYEVL D   
Sbjct: 22  NFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFF 381
           RK YD    +    +   +++S S      G +
Sbjct: 80  RKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIY 112

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 60.7 bits (147), Expect = 5e-12
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
                L L R    D   +++ Y+++++L+HPDK  G+       ++L + +        
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSH---ALMQELNSLWGTFKTEVY 67

Query: 349 RKAYD 353
               +
Sbjct: 68  NLRMN 72

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 63.8 bits (155), Expect = 6e-12
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 288 TDHYSALGLSRFE-----NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEV 342
           +  Y     +  +      +D S L++EYR+     HPD         E    L  AY  
Sbjct: 11  STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGS---EQSSTLNQAYHT 67

Query: 343 LFDSFKRKAYDDELRR 358
           L D  +R  Y  +L R
Sbjct: 68  LKDPLRRSQYMLKLLR 83

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 296 LSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAY 352
           +   + V    +K+ YRK  ++VHPDK  G      A   F +L +A+    +  ++  Y
Sbjct: 123 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 59.4 bits (143), Expect = 3e-10
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-----EKAVEAFKKLQNAYEVL 343
           D++S +  +R   VD + L+  Y++   LVHPD          + + +    + +AY+ L
Sbjct: 44  DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

Query: 344 FDSFKRKAYDDELRREELLDYFR 366
                R  Y  +L   E+ +   
Sbjct: 104 LAPLSRGLYLLKLHGIEIPERTD 126

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFD 345
           D+Y  LG+ R  N     + + YRK A+  HPD     E   KA + F  +  A EVL D
Sbjct: 383 DYYKILGVKR--NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440

Query: 346 SFKRKAYD 353
              RK +D
Sbjct: 441 PEMRKKFD 448

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 4e-08
 Identities = 52/379 (13%), Positives = 102/379 (26%), Gaps = 128/379 (33%)

Query: 278 EDEVVRLLNCTDHYSALGLSRFENVDVSIL-KREYRKKAMLVHPDKNMG----------- 325
           ED  V   +C D          +++  SIL K E     +++  D   G           
Sbjct: 26  EDAFVDNFDCKD---------VQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSK 74

Query: 326 NEKAVEAF--KKLQNAYEVLFDSFKRKAYDDELRREELLDYFRRFQSASQ---------- 373
            E+ V+ F  + L+  Y+ L    K +     +     ++   R  + +Q          
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 374 -------------KNGR----HGFFGSGYARS----EADCDDPFGESRRIACKKCNNFHV 412
                        +  +     G  GSG  ++    +  C        ++ CK   +F +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDV-CLS-----YKVQCK--MDFKI 184

Query: 413 -WIETKK---------------SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFG-IFQ 455
            W+  K                 +    W    +     K     ++     L     ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 456 KV-----DVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGTS 510
                  +V       N++ +NA +      + C              +T++        
Sbjct: 245 NCLLVLLNV------QNAKAWNAFN------LSCK-----------ILLTTRFKQVTDFL 281

Query: 511 SGQRGGRMPPPNLEETMTEDEFLEWLQNAVQAGLFDNFSGSTSTDSPT-AKAGSSSKSSG 569
           S      +   +   T+T DE            L   +      D P      +  + S 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKS---------LLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 570 TAANGGSSNKRKKKGKKQW 588
            A          + G   W
Sbjct: 333 IAE-------SIRDGLATW 344

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 296 LSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVL 343
           +   + V    +K+ YRK  ++VHP K  G      A   F +L +A+   
Sbjct: 39  VGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 15/81 (18%)

Query: 270 GDDSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKA 329
           G D +M S++              L L+    +    LK  +RK  +  HPDK  G+   
Sbjct: 6   GFDPKMNSKE----------ALQILNLTE-NTLTKKKLKEVHRKIMLANHPDKG-GSP-- 51

Query: 330 VEAFKKLQNAYEVLFDSFKRK 350
                K+  A + L      K
Sbjct: 52  -FLATKINEAKDFLEKRGISK 71

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 296 LSRFENVDVSILKREYRKKAMLVHPDKNMGN-------EKAVEAFKKLQNAYEVL 343
           +   + ++ + +++ Y++  +++HPDK             A + F+ LQ A++  
Sbjct: 46  VPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	588
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.86
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.8
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.8
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.79
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.78
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.77
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.77
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.77
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.77
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.77
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.77
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.77
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.76
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.76
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.75
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.75
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.75
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.75
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.72
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.7
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.66
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.65
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.63
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.63
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.63
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.62
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.61
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.61
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.61
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.6
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.54
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.53
2guz_A	71	Mitochondrial import inner membrane translocase su	99.51
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.5
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.03
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.94
2guz_B	65	Mitochondrial import inner membrane translocase su	98.49
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	97.45
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.77
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	94.34
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	94.33
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	94.1
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	93.55
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	93.39
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	92.58
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	90.57
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	89.99
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	84.89
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	81.29

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.86  E-value=5.7e-23  Score=214.74  Aligned_cols=69  Identities=35%  Similarity=0.527  Sum_probs=0.0

Q ss_pred             cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          286 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       286 ~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..+|||+||||++  +||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||++|+.||+++.
T Consensus        26 ~~~d~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           26 ELKDYYAILGVQP--TDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            3479999999999  8999999999999999999999974 6899999999999999999999999999743

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=4.7e-20  Score=160.97  Aligned_cols=70  Identities=33%  Similarity=0.574  Sum_probs=66.0

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE  359 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~  359 (588)
                      .|||+||||++  +++.+|||+|||+|++++|||++++++.++++|++|++||++|+||.+|+.||+.+..+
T Consensus        17 ~~~Y~vLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           17 TALYDLLGVPS--TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             SHHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            69999999999  89999999999999999999999877899999999999999999999999999976543

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=3.7e-20  Score=154.68  Aligned_cols=68  Identities=43%  Similarity=0.593  Sum_probs=64.9

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      ..|||+||||++  +++.+|||+|||+|++++|||++++++.++++|++|++||++|+||.+|+.||.++
T Consensus         6 ~~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   73 (79)
T 2dn9_A            6 SGDYYQILGVPR--NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG   73 (79)
T ss_dssp             CSCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred             CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence            369999999999  89999999999999999999999877889999999999999999999999999875

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.4e-19  Score=161.36  Aligned_cols=69  Identities=39%  Similarity=0.536  Sum_probs=65.8

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR  358 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~  358 (588)
                      .|||+||||++  +++.+|||+|||+|++++||||+++++.++++|++|++||++|+||.+|+.||.++..
T Consensus        20 ~d~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   88 (112)
T 2ctq_A           20 EDYYTLLGCDE--LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS   88 (112)
T ss_dssp             CCHHHHTTCCT--TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence            69999999999  8999999999999999999999987789999999999999999999999999998753

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.78  E-value=1.3e-19  Score=150.82  Aligned_cols=67  Identities=42%  Similarity=0.633  Sum_probs=63.4

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  ++|.+|||+|||+|++++|||++++ +.+.+.|+.|++||++|+||.+|+.||.++.
T Consensus         3 ~~~y~iLgv~~--~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   69 (77)
T 1hdj_A            3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCSHHHHTCCT--TCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            68999999999  8999999999999999999999974 7899999999999999999999999999763

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.5e-19  Score=150.83  Aligned_cols=68  Identities=44%  Similarity=0.596  Sum_probs=64.0

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..|||+||||++  +++.+|||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|+.||.++.
T Consensus         6 ~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            6 SGDYYEILGVSR--GASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             SCCHHHHHTCCT--TCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            369999999999  8999999999999999999999974 8899999999999999999999999999763

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.77  E-value=1.1e-19  Score=156.30  Aligned_cols=69  Identities=32%  Similarity=0.539  Sum_probs=63.8

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~------p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..|||+||||++  +++.+|||+|||+|++++|||+++.+      +.+++.|++|++||++|+||.+|+.||..+.
T Consensus        15 ~~~~y~iLgv~~--~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           15 KKDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSCHHHHTTCCT--TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            479999999999  89999999999999999999999743      5688999999999999999999999999763

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.8e-19  Score=152.72  Aligned_cols=67  Identities=34%  Similarity=0.549  Sum_probs=63.9

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  +++.+|||+|||+|++++|||+++ ++.++++|++|++||++|+||.+|+.||..+.
T Consensus         7 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A            7 GSYYDILGVPK--SASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             CSHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            69999999999  899999999999999999999997 58899999999999999999999999999864

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=4.5e-19  Score=157.45  Aligned_cols=68  Identities=40%  Similarity=0.596  Sum_probs=65.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  +++.+|||+|||+|++++|||++++++.+.++|++|++||++|+||.+|+.||.++.
T Consensus        17 ~~~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           17 ESLYHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             CCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            69999999999  899999999999999999999998778999999999999999999999999998764

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=6.4e-19  Score=151.40  Aligned_cols=71  Identities=31%  Similarity=0.509  Sum_probs=66.0

Q ss_pred             HHHHHhhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhc
Q 007833          279 DEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY  352 (588)
Q Consensus       279 ~e~~ril~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~Y  352 (588)
                      +++.+++...|||+||||++  +++.+|||+|||+|++++||||+++ +.++++|++|++||++|+||.+|+..
T Consensus        18 ~~~~~~~~~~~~y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~~   88 (90)
T 2ys8_A           18 DAIRRIRNSKDSWDMLGVKP--GASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGPS   88 (90)
T ss_dssp             HHHHHHHTCSSHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHhcCCCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccCC
Confidence            56778889999999999999  8999999999999999999999974 78999999999999999999998753

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=4.9e-19  Score=151.24  Aligned_cols=67  Identities=37%  Similarity=0.528  Sum_probs=63.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  +++.+|||+|||+|++++|||+++. +.++++|++|++||++|+||.+|+.||.++.
T Consensus        17 ~d~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           17 FDPYRVLGVSR--TASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             SCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            69999999999  8999999999999999999999974 7899999999999999999999999999763

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=2.4e-19  Score=150.71  Aligned_cols=67  Identities=43%  Similarity=0.612  Sum_probs=63.0

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      .|||+||||++  +++.+|||+|||+|++++|||+++.+ +.+++.|++|++||++|+||.+|+.||.++
T Consensus         9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   76 (82)
T 2ej7_A            9 VDYYEVLDVPR--QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG   76 (82)
T ss_dssp             CCHHHHTTCCT--TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred             cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            69999999999  89999999999999999999999865 368899999999999999999999999875

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.76  E-value=2.7e-19  Score=147.54  Aligned_cols=68  Identities=41%  Similarity=0.625  Sum_probs=61.6

Q ss_pred             hhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          284 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       284 il~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      +....|||+||||++  +++.+|||+|||+|++++|||++++   +.+.|++|++||++|+||.+|+.||+++
T Consensus         4 m~~~~~~y~iLgl~~--~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~g   71 (73)
T 2och_A            4 MVKETGYYDVLGVKP--DASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIYDQGG   71 (73)
T ss_dssp             --CCCCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCTT---CHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             ccCCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCcC---HHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            345579999999999  8999999999999999999999964   3689999999999999999999999976

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.76  E-value=3.1e-19  Score=167.31  Aligned_cols=71  Identities=28%  Similarity=0.506  Sum_probs=64.6

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------HHHHHHHHHHHHHHHhhhcchhhhchhhhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE------KAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE  359 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p------~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~~  359 (588)
                      ..|||+||||++  +++.+|||+|||+|++++||||++.++      .|.+.|++|++||++|+||.+|+.||..+...
T Consensus         9 ~~~~y~iLgv~~--~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~   85 (155)
T 2l6l_A            9 KKDWYSILGADP--SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED   85 (155)
T ss_dssp             CSHHHHHHTCCT--TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred             CCChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence            369999999999  899999999999999999999997653      37799999999999999999999999987644

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=7.6e-19  Score=153.71  Aligned_cols=68  Identities=43%  Similarity=0.623  Sum_probs=63.5

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  +++.+|||+|||+|++++|||+++++ +.+++.|++|++||++|+||.+|+.||.++.
T Consensus         2 ~d~Y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~   70 (99)
T 2lgw_A            2 ASYYEILDVPR--SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR   70 (99)
T ss_dssp             CCHHHHSSSCT--TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            68999999999  89999999999999999999999865 4588999999999999999999999999864

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.75  E-value=2.1e-19  Score=157.80  Aligned_cols=68  Identities=41%  Similarity=0.687  Sum_probs=64.8

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  ++|.+|||+|||+|++++|||+++.++.++++|++|++||++|+||.+|+.||.++.
T Consensus         3 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (103)
T 1bq0_A            3 QDYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (103)
T ss_dssp             CCSTTTTSSCS--SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred             CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence            68999999999  899999999999999999999998778899999999999999999999999999864

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=6e-19  Score=151.64  Aligned_cols=67  Identities=43%  Similarity=0.597  Sum_probs=63.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      .|||+||||++  +++.+|||+|||+|++++|||+++.+ +.++++|++|++||++|+||.+|+.||..+
T Consensus         9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   76 (92)
T 2dmx_A            9 ANYYEVLGVQA--SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG   76 (92)
T ss_dssp             CCHHHHHTCCT--TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred             cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            69999999999  89999999999999999999999765 478899999999999999999999999875

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.75  E-value=4.9e-19  Score=152.54  Aligned_cols=69  Identities=39%  Similarity=0.613  Sum_probs=63.1

Q ss_pred             hhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          284 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       284 il~~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ++...|||+||||++  +++.+|||+|||+|++++|||+++++   .++|++|++||++|+||.+|+.||.++.
T Consensus         4 m~~~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   72 (92)
T 2o37_A            4 MVKETKLYDLLGVSP--SANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGL   72 (92)
T ss_dssp             CCSCCHHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred             cccCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence            445689999999999  89999999999999999999999654   5799999999999999999999999864

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.72  E-value=1.9e-18  Score=153.03  Aligned_cols=70  Identities=31%  Similarity=0.424  Sum_probs=64.6

Q ss_pred             CCCcccccCcccCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHHHhhhcchhhhchhhhhh
Q 007833          287 CTDHYSALGLSRFENV-DVSILKREYRKKAMLVHPDKNMG---NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR  358 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~a-s~~eIKkAYRklalk~HPDkn~~---~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~~  358 (588)
                      ..|||+||||++  ++ +.+|||+|||+|++++|||++++   .+.+++.|++|++||++|+||.+|+.||..+..
T Consensus        14 ~~~~y~iLgv~~--~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           14 LENCYDVLEVNR--EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TSCHHHHTTCCG--GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCCHHHHcCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            369999999999  89 99999999999999999999975   366889999999999999999999999998753

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.70  E-value=4.7e-18  Score=163.87  Aligned_cols=68  Identities=38%  Similarity=0.563  Sum_probs=65.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  +|+.+|||+|||+|++++||||+++++++.++|++|++||++|+||.+|+.||+++.
T Consensus         2 ~~~y~~l~~~~--~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~   69 (210)
T 3apq_A            2 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   69 (210)
T ss_dssp             CCHHHHHTCCT--TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred             CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence            58999999999  899999999999999999999998888999999999999999999999999999864

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.66  E-value=3.6e-17  Score=164.62  Aligned_cols=125  Identities=18%  Similarity=0.311  Sum_probs=101.4

Q ss_pred             CCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec-
Q 007833          394 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN-  472 (588)
Q Consensus       394 ~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~-  472 (588)
                      +.+.+.+.+.|+.|+|+|     ++++. ..+|+.|+       |+|++... ++.++ |+|+++++|+ .|.|.|..+ 
T Consensus        31 k~i~~~r~~~C~~C~G~G-----~~~g~-~~~C~~C~-------G~G~~~~~-~~~g~-~~~~~~~~C~-~C~G~G~~i~   94 (248)
T 1nlt_A           31 AKLALNKQILCKECEGRG-----GKKGA-VKKCTSCN-------GQGIKFVT-RQMGP-MIQRFQTECD-VCHGTGDIID   94 (248)
T ss_dssp             EEEEEEEEEECTTTTTCS-----BSTTT-CCCCTTSS-------SSSCEEEE-EESSS-EEEEEECSCT-TCSSSSSCCC
T ss_pred             EEEEeeEEEeCCCCcCcc-----CCCCC-CccCCCCC-------CCcEEEEE-EecCc-eEEEEEEcCC-CCCCcCEEec
Confidence            356678899999999998     56555 58999999       99988764 45667 8889999999 999999877 


Q ss_pred             -CcccccCCCceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          473 -ATDWYICQGMRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       473 -~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                       .++|+.|+|.|.+.+++.++|+||+|+.|++ .+.+|.|+.+  .++|++|++..+  .+|++|++-
T Consensus        95 ~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~--~~g~~GDl~v~i~v~~h~~F~R~  160 (248)
T 1nlt_A           95 PKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQA--PDVIPGDVVFIVSERPHKSFKRD  160 (248)
T ss_dssp             TTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC--TTCBCCCEEEEEEECCCSSCEEE
T ss_pred             cCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCC--CCCCcceEEEEEEEecCccceee
Confidence             9999999999999999999999999998884 3555555543  334666776666  778888763

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.65  E-value=5.6e-17  Score=139.23  Aligned_cols=64  Identities=28%  Similarity=0.224  Sum_probs=58.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhhhcchhhhch
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYD  353 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~-p~A~e~Fk~I~~AYevLsD~~kR~~YD  353 (588)
                      .++|+||||++  ++|.+|||+|||+|++++|||+++++ +.|+++|++|++||++|+|...|..++
T Consensus        16 ~~~y~vLgv~~--~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~~   80 (88)
T 1iur_A           16 KEVTSVVEQAW--KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNA   80 (88)
T ss_dssp             HHHHHHHHHTT--SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred             HHHHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            58999999999  89999999999999999999999876 458999999999999999988875544

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.63  E-value=2.7e-17  Score=147.63  Aligned_cols=63  Identities=29%  Similarity=0.344  Sum_probs=58.2

Q ss_pred             CCcccccCcccCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          288 TDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~--~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      .+||+||||++  +++.  +|||+|||+|++++||||+++    +++|++|++||++|+||.+|+.||.++
T Consensus         8 ~~~Y~iLgv~~--~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            8 LQLMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHTTCCT--TSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhHHHHcCCCC--CCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            58999999999  7777  999999999999999999974    489999999999999999999999754

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.63  E-value=1e-16  Score=138.79  Aligned_cols=63  Identities=25%  Similarity=0.421  Sum_probs=56.0

Q ss_pred             HHHhhcC-CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHhhh
Q 007833          281 VVRLLNC-TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFD  345 (588)
Q Consensus       281 ~~ril~~-~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p---~A~e~Fk~I~~AYevLsD  345 (588)
                      +.+++.. .++|++|||++  +||.+|||+|||++|+++|||||++++   .|+++|++|++||+||.+
T Consensus        25 l~~~L~~~~~~y~~Lgv~~--~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           25 MHTVLWAGETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             GGGTSCTTCCSCCCCCGGG--SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccCCeecCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            3456666 49999999999  899999999999999999999998765   388999999999999986

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.62  E-value=1.9e-16  Score=152.63  Aligned_cols=63  Identities=27%  Similarity=0.479  Sum_probs=59.0

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHhhhcchhhhc
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAY  352 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~---A~e~Fk~I~~AYevLsD~~kR~~Y  352 (588)
                      .|||+||||++  +++.+|||+|||++++++||||+++++.   |+++|++|++||++|+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~--~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGG--GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCC--CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            58999999999  8999999999999999999999976543   889999999999999999999988

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.61  E-value=1.9e-16  Score=151.29  Aligned_cols=69  Identities=23%  Similarity=0.347  Sum_probs=61.0

Q ss_pred             CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      |||+||||++.++.|.++||++||+|++++||||+++++.     |.+.|+.|++||++|+||.+|+.||..+.
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            7999999999333399999999999999999999986543     56899999999999999999999998754

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.61  E-value=2.9e-16  Score=154.34  Aligned_cols=70  Identities=26%  Similarity=0.360  Sum_probs=62.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~-----A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++..++|.++||++||+|++++||||+++++.     |.+.|++|++||+||+||.+|+.||..+.
T Consensus        43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~  117 (207)
T 3bvo_A           43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH  117 (207)
T ss_dssp             CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            69999999999545899999999999999999999976432     56789999999999999999999997643

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.61  E-value=9.6e-17  Score=153.73  Aligned_cols=64  Identities=28%  Similarity=0.367  Sum_probs=56.3

Q ss_pred             CCcccccCcccCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVD--VSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as--~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++  +|+  .+|||+|||++|+++||||+++    +++|++|++||++|+||.+|+.||+++.
T Consensus        11 ~d~Y~vLGl~~--~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           11 LQLMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHTTTCCG--GGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccHHHHcCCCC--CCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            58999999999  666  6999999999999999999965    3899999999999999999999999863

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.60  E-value=3.2e-16  Score=131.67  Aligned_cols=60  Identities=18%  Similarity=0.346  Sum_probs=55.0

Q ss_pred             CCcccccCcccCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhch
Q 007833          288 TDHYSALGLSRFEN--VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYD  353 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~--as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD  353 (588)
                      .++|+||||++  +  ++.+|||+|||+|++++|||++++    +++|++|++||++|+|+.+|..+|
T Consensus        11 ~~~y~iLgl~~--~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           11 ERLLELLKLPR--QLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHTCCS--SSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence            47999999999  7  999999999999999999999853    589999999999999999998744

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.54  E-value=1.5e-15  Score=146.33  Aligned_cols=66  Identities=30%  Similarity=0.472  Sum_probs=59.9

Q ss_pred             CCCccccc------CcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          287 CTDHYSAL------GLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       287 ~~d~Y~IL------Gv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      ..|||+||      |+++. ++|.++||+|||+|++++||||+++   +.+.|+.|++||++|+||.+|+.||..+
T Consensus        10 ~~d~y~ll~~~~p~~~~~~-~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIW-TIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCS-CCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCC-CCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            37999999      46653 7999999999999999999999964   7899999999999999999999999976

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.53  E-value=1.9e-15  Score=133.88  Aligned_cols=58  Identities=17%  Similarity=0.298  Sum_probs=51.2

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----HHHHHHHHHHHHHHHhhhcch
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---NE----KAVEAFKKLQNAYEVLFDSFK  348 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~---~p----~A~e~Fk~I~~AYevLsD~~k  348 (588)
                      .|||+|||++.   ||.+|||+|||++++++|||||++   ++    .|+++|++|++||++|+|+..
T Consensus        41 ~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           41 SGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             SCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            59999999985   799999999999999999999863   11    478999999999999999863

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.51  E-value=7.6e-15  Score=120.74  Aligned_cols=58  Identities=24%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK  350 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~  350 (588)
                      .++|+||||++. ++|.+|||+|||+|++++|||++. +   .+.|++|++||++|+|+..|+
T Consensus        14 ~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g-~---~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           14 KEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGG-S---PFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             HHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTC-C---HHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHhhhhhcC
Confidence            579999999982 389999999999999999999974 2   479999999999999988774

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.50  E-value=1.7e-15  Score=172.40  Aligned_cols=69  Identities=38%  Similarity=0.540  Sum_probs=40.5

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      ..|||+||||++  +||.+|||+|||+|++++||||+++++.|+++|++|++||++|+||.+|+.||+++.
T Consensus        20 ~~~~y~~lg~~~--~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           20 DQNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             ---CHHHHTCCT--TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            379999999999  899999999999999999999998778899999999999999999999999999874

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.8e-12  Score=110.14  Aligned_cols=84  Identities=17%  Similarity=0.404  Sum_probs=71.4

Q ss_pred             CCCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec
Q 007833          393 DDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN  472 (588)
Q Consensus       393 E~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~  472 (588)
                      +..+.+.+.+.|+.|+|+|     .+++.....|+.|+       |+|++... +    |+++ .+.+|+ .|.|.|..+
T Consensus        20 ~~~i~~~~~~~C~~C~G~G-----~~~g~~~~~C~~C~-------G~G~~~~~-~----G~~~-~~~~C~-~C~G~G~~i   80 (104)
T 2ctt_A           20 NKEFTVNIMDTCERCNGKG-----NEPGTKVQHCHYCG-------GSGMETIN-T----GPFV-MRSTCR-RCGGRGSII   80 (104)
T ss_dssp             CTTCCSSCCEECSSSSSSS-----SCTTCCCEECSSSS-------SSCEEEEE-E----TTEE-EEEECS-SSSSSSEEC
T ss_pred             EEEEEeeeeeECCCCcCCc-----cCCCCCCccCCCCC-------CCEEEEEE-e----CCEE-EEEECC-cCCCcceEC
Confidence            4567889999999999998     66667788999999       99988653 2    3343 567899 999999999


Q ss_pred             CcccccCCCceeccceeEEEEEe
Q 007833          473 ATDWYICQGMRCPANTHKPSFHV  495 (588)
Q Consensus       473 ~~~C~~C~G~G~~~~t~~v~V~V  495 (588)
                      .++|+.|+|.|.+.+++.++|++
T Consensus        81 ~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           81 ISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SSCCSSSSSCSEECCCCSSCCSC
T ss_pred             CCcCCCCCCeeEEEEEEEEEEEc
Confidence            99999999999999999988876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.03  E-value=1.6e-10  Score=118.35  Aligned_cols=66  Identities=38%  Similarity=0.516  Sum_probs=56.1

Q ss_pred             CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHhhhcchhhhchh
Q 007833          287 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDD  354 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~---p~A~e~Fk~I~~AYevLsD~~kR~~YD~  354 (588)
                      ..++|++||+.+  .++.++|+++|+++++++|||+.+.+   +.++++|++|++||++|+||++|+.||.
T Consensus       381 ~~~~y~~lg~~~--~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKR--NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSST--TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCc--cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            469999999999  78899999999999999999999753   3488999999999999999999999997

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.94  E-value=1.1e-09  Score=91.02  Aligned_cols=74  Identities=20%  Similarity=0.429  Sum_probs=60.8

Q ss_pred             CCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC
Q 007833          394 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA  473 (588)
Q Consensus       394 ~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~  473 (588)
                      ..+.+.+.+.|+.|+|+|     ..+......|+.|+       |+|.+.. .+    |+++ .+.+|+ .|.|.|....
T Consensus         4 ~~i~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~-~~----g~~~-~~~~C~-~C~G~G~~~~   64 (79)
T 1exk_A            4 KEIRIPTLEECDVCHGSG-----AKPGTQPQTCPTCH-------GSGQVQM-RQ----GFFA-VQQTCP-HCQGRGTLIK   64 (79)
T ss_dssp             TSCCCCCEEECGGGTTTS-----BCSSSCCEECTTTT-------TSSEEEE-EE----TTEE-EEEECT-TTTTSSEECS
T ss_pred             EEEEcccceECCCCcccc-----cCCCccCCCCCCCc-------CeEEEEE-Ec----CCCE-EeeECc-CCCCccEECC
Confidence            567789999999999998     44455567999999       9998765 22    4554 677899 9999999999


Q ss_pred             cccccCCCceecc
Q 007833          474 TDWYICQGMRCPA  486 (588)
Q Consensus       474 ~~C~~C~G~G~~~  486 (588)
                      ++|+.|+|.|.+.
T Consensus        65 ~~C~~C~G~G~~~   77 (79)
T 1exk_A           65 DPCNKCHGHGRVE   77 (79)
T ss_dssp             SBCGGGTTSSEEE
T ss_pred             CcCCCCCCeEEEe
Confidence            9999999999764

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.49  E-value=9.7e-08  Score=77.46  Aligned_cols=50  Identities=12%  Similarity=0.067  Sum_probs=43.9

Q ss_pred             cccccCcccCCC---CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 007833          290 HYSALGLSRFEN---VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD  345 (588)
Q Consensus       290 ~Y~ILGv~~~~~---as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD  345 (588)
                      -|.||||++  +   ++.++||++||+|....||||...    .-...+|++|+++|..
T Consensus         6 A~~ILgv~~--~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            6 SCKILNIEE--SKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHTTCCG--GGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCC--CcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHH
Confidence            478999999  7   899999999999999999999743    4667789999999964

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=97.45  E-value=3.8e-05  Score=73.62  Aligned_cols=63  Identities=6%  Similarity=-0.022  Sum_probs=47.1

Q ss_pred             cCcccccCCCceeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          472 NATDWYICQGMRCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       472 ~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      ...+|..|+|.|.+.+++.++|+||+|+.+++ .+.+|.|..+.  ++|++|++..+  .+|++|.+-
T Consensus        26 i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~--~g~~GDl~v~i~~~~h~~F~R~   91 (181)
T 3agx_A           26 ISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS--NNIPADIVFVLKDKPHNIFKRD   91 (181)
T ss_dssp             EEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS--SSCCCCEEEEEEECCCSSCEEE
T ss_pred             EecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC--CCCcccEEEEEEEeccccceee
Confidence            34568999999999999999999999998884 35555555443  34666766666  777777653

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.77  E-value=0.00017  Score=56.13  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=28.1

Q ss_pred             EEEEecccccCCCceeecCcccccCCCceeccce
Q 007833          455 QKVDVPCAYVCANSRIYNATDWYICQGMRCPANT  488 (588)
Q Consensus       455 qq~q~~C~y~C~GsGi~~~~~C~~C~G~G~~~~t  488 (588)
                      |+++++|+ .|.|+|..+.++|+.|+|.|.+...
T Consensus         6 qq~~~~C~-~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            6 DDLETTCP-NCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HHHEEECT-TTTTSCEETTEECTTTTTSSEEECH
T ss_pred             CceeccCc-CCcccccCCCCcCCCCCCcEEEEEE
Confidence            35577999 8999999999999999999976543

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=94.34  E-value=0.0088  Score=49.03  Aligned_cols=46  Identities=22%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             cccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC--------cccccCCCceecc
Q 007833          422 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA--------TDWYICQGMRCPA  486 (588)
Q Consensus       422 ~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~--------~~C~~C~G~G~~~  486 (588)
                      ....|+.|+       |+|....           ....+|+ .|.|.|....        ..|+.|+|.|.+.
T Consensus        10 ~~~~C~~C~-------G~G~~~~-----------~~~~~C~-~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A           10 TLEECDVCH-------GSGAKPG-----------TQPQTCP-TCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             CEEECGGGT-------TTSBCSS-----------SCCEECT-TTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             cceECCCCc-------ccccCCC-----------ccCCCCC-CCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            457899999       9995321           1134799 8999996643        5999999999654

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=94.33  E-value=0.015  Score=45.05  Aligned_cols=28  Identities=21%  Similarity=0.422  Sum_probs=20.6

Q ss_pred             EecccccCCCceeecCcccccCCCceecc
Q 007833          458 DVPCAYVCANSRIYNATDWYICQGMRCPA  486 (588)
Q Consensus       458 q~~C~y~C~GsGi~~~~~C~~C~G~G~~~  486 (588)
                      +.+|+ .|.|+|.....+|+.|+|.|.+.
T Consensus         9 ~~~C~-~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            9 EVACP-KCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             EEECT-TTTTSSEETTEECTTTTTSSEEE
T ss_pred             cccCC-CCcceeccCCCCCccCCCCccEE
Confidence            34677 78888777777888888887644

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.10  E-value=0.028  Score=48.66  Aligned_cols=52  Identities=19%  Similarity=0.399  Sum_probs=35.2

Q ss_pred             cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC
Q 007833          400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA  473 (588)
Q Consensus       400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~  473 (588)
                      ....|+.|+|+|........-.....|+.|+       |.|.+.              ..+|+ .|.|.|....
T Consensus        44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~-------G~G~~i--------------~~~C~-~C~G~G~v~~   95 (104)
T 2ctt_A           44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCG-------GRGSII--------------ISPCV-VCRGAGQAKQ   95 (104)
T ss_dssp             CCEECSSSSSSCEEEEEETTEEEEEECSSSS-------SSSEEC--------------SSCCS-SSSSCSEECC
T ss_pred             CCccCCCCCCCEEEEEEeCCEEEEEECCcCC-------CcceEC--------------CCcCC-CCCCeeEEEE
Confidence            3468999999984332211112346899999       999653              24799 8999986643

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=93.55  E-value=0.018  Score=54.76  Aligned_cols=52  Identities=8%  Similarity=0.070  Sum_probs=37.3

Q ss_pred             eeccceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHH
Q 007833          483 RCPANTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEW  535 (588)
Q Consensus       483 G~~~~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~w  535 (588)
                      +.+.+++.++|+||+|+.+++ .+.+|.|..+.. +++++|++..+  .+|++|.+
T Consensus        36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~~~~h~~F~R   90 (180)
T 2q2g_A           36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQTKTHPRFTR   90 (180)
T ss_dssp             EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEEECCCSSCEE
T ss_pred             ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEEEEecccEEE
Confidence            778889999999999998884 355565554333 34556666655  77777765

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=93.39  E-value=0.0081  Score=46.63  Aligned_cols=40  Identities=20%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeE
Q 007833          400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF  454 (588)
Q Consensus       400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~  454 (588)
                      ....|+.|+|+|     ...   ...|+.|+       |+|.+.....+.++|++
T Consensus         8 ~~~~C~~C~GsG-----~~~---~~~C~~C~-------G~G~v~~~qG~~~~g~~   47 (53)
T 2bx9_A            8 LEVACPKCERAG-----EIE---GTPCPACS-------GKGVILTAQGYTLLDFI   47 (53)
T ss_dssp             HEEECTTTTTSS-----EET---TEECTTTT-------TSSEEECHHHHHHHHHH
T ss_pred             ccccCCCCccee-----ccC---CCCCccCC-------CCccEEEEecccHHHHH
Confidence            456899999998     222   36799999       99988764323444443

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=92.58  E-value=0.022  Score=53.69  Aligned_cols=49  Identities=6%  Similarity=-0.050  Sum_probs=33.8

Q ss_pred             ceeEEEEEeCCcccCCC-CccccCCCCCCCCCCCCCccccCC--ChhHHHHHH
Q 007833          487 NTHKPSFHVNTSVTSKH-NTSKGTSSGQRGGRMPPPNLEETM--TEDEFLEWL  536 (588)
Q Consensus       487 ~t~~v~V~Vp~Gv~d~~-~r~~g~g~~~~gg~~p~~~~~~~~--~e~e~~~wl  536 (588)
                      +.+.++|+||+|+.+++ .+.+|.|..+.++ +|++|++..+  .+|++|.+-
T Consensus        34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~~h~~F~R~   85 (170)
T 1c3g_A           34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHPNFKRD   85 (170)
T ss_dssp             EEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEECCCSSEEEE
T ss_pred             EeEEEEEEeCCCccCCCEEEEeccccCCCCC-CccccEEEEEEEccCCccEEe
Confidence            88999999999998884 3556666544444 3455665555  777777653

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=90.57  E-value=0.098  Score=40.50  Aligned_cols=31  Identities=23%  Similarity=0.589  Sum_probs=23.0

Q ss_pred             cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEe
Q 007833          400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQS  445 (588)
Q Consensus       400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~  445 (588)
                      ....|+.|+|+|     ...   ...|+.|+       |+|.+...
T Consensus         8 ~~~~C~~C~GsG-----~~i---~~~C~~C~-------G~G~v~~~   38 (53)
T 3lcz_A            8 LETTCPNCNGSG-----REE---PEPCPKCL-------GKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSC-----EET---TEECTTTT-------TSSEEECH
T ss_pred             eeccCcCCcccc-----cCC---CCcCCCCC-------CcEEEEEE
Confidence            356899999997     221   26799999       99987653

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=89.99  E-value=0.1  Score=52.04  Aligned_cols=10  Identities=30%  Similarity=0.697  Sum_probs=5.9

Q ss_pred             cccccccCcc
Q 007833          402 IACKKCNNFH  411 (588)
Q Consensus       402 v~C~kC~GsG  411 (588)
                      ..|+.|+|+|
T Consensus        55 ~~C~~C~G~G   64 (248)
T 1nlt_A           55 KKCTSCNGQG   64 (248)
T ss_dssp             CCCTTSSSSS
T ss_pred             ccCCCCCCCc
Confidence            4566666665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=84.89  E-value=0.5  Score=52.75  Aligned_cols=46  Identities=13%  Similarity=0.076  Sum_probs=35.6

Q ss_pred             CCCcccccCcccCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 007833          287 CTDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEV  342 (588)
Q Consensus       287 ~~d~Y~ILGv~~~~~as~--~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYev  342 (588)
                      ..|||.+||++.  +...  .+|++|||++|+..++|        .+++..+..|+.|
T Consensus       628 ~~~~~~~lG~~~--~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          628 KASTNHILGFPF--TSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCSSSEETTEES--SHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCC--ChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            358999999977  3333  66999999999976444        4788888888875

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=81.29  E-value=0.077  Score=60.16  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             CCCCCcccccccccccCccceeeeccCcc---ccccccccc
Q 007833          393 DDPFGESRRIACKKCNNFHVWIETKKSKA---SARWCQECN  430 (588)
Q Consensus       393 E~~~~isr~v~C~kC~GsG~~~~t~k~~~---~ar~C~~C~  430 (588)
                      ++.+.+.+...|..|+|+|     .+.+.   .+.+|+.|+
T Consensus       183 ~k~i~v~~~~~C~tCHGsG-----A~~Gt~~~~~~tC~tCH  218 (669)
T 3pmq_A          183 AYTRNLVSIDTCNSCHSNL-----AFHGGRYNQVETCVTCH  218 (669)
T ss_dssp             CCCCCCCCSHHHHHHHSSC-----CTTTTTSCSSSCSTTTS
T ss_pred             ceEEEeccCCcCCCCCCCC-----CcCCccCcCCccCCCCC
Confidence            4567788999999999998     55555   578999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	588
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	7e-13
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-12
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	5e-11
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	5e-11
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-11
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-10
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-08
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-07

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 62.0 bits (150), Expect = 7e-13
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKA-----VEAFKKLQNAYEVL 343
           D+++  GL     +D   L   ++      HPDK     +A     V+    +  A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 344 FDSFKRKAYDDELR 357
                R  Y   L 
Sbjct: 62  RHPLMRAEYLLSLH 75

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 60.0 bits (145), Expect = 3e-12
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LG+S+    +   +++ Y++ AM  HPD+N G+++A   FK+++ AYEVL DS K
Sbjct: 4   DYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 349 RKAYD 353
           R AYD
Sbjct: 62  RAAYD 66

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.3 bits (138), Expect = 5e-11
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFD 345
             +  +G++  + V    +K+ YRK  ++VHPDK  G    + A   F +L +A+    +
Sbjct: 34  TKWKPVGMA--DLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 346 SFKRKAY 352
             ++  Y
Sbjct: 92  QGQKPLY 98

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (138), Expect = 5e-11
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 273 SEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEA 332
           S M  E  + +     D YS LG     + ++S LK++Y+K  +L HPDK   +  A   
Sbjct: 6   SGMALEQTLKK-----DWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTM 58

Query: 333 ------FKKLQNAYEVLFDSFKRKAYD 353
                 F ++  A+++L +   +K YD
Sbjct: 59  EECMQKFIEIDQAWKILGNEETKKKYD 85

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 56.2 bits (135), Expect = 9e-11
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 272 DSEMTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVE 331
           D  ++  D+             L L R    D   +++ Y+++++L+HPDK      +  
Sbjct: 2   DRVLSRADK-------ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG----GSHA 50

Query: 332 AFKKLQNAYEVLFDSFKRKAYD 353
             ++L + +            +
Sbjct: 51  LMQELNSLWGTFKTEVYNLRMN 72

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 1e-10
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
           D+Y  LGL+R        +KR YR++A+  HPDKN     A E FK++  AY+VL D  K
Sbjct: 4   DYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60

Query: 349 RKAYD 353
           R+ +D
Sbjct: 61  REIFD 65

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 348
                LGL R    ++ ++++ Y KK    HPDK    EK     KK+   Y+ + D  K
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMEDGVK 64

Query: 349 RKAYDDELRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPF 396
                         D+   + +          +   +  +  + ++ F
Sbjct: 65  YAHQP---------DFGGFWDATEIPTYGTDEWEQWW--NAFNEENLF 101

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAV-EAFKKLQNAYEVLFDSF 347
           +  S +  +    +  S  K+  R+  +  HPDKN  N     E FK LQN    L    
Sbjct: 17  EVTSVVEQAW--KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQA 74

Query: 348 KRKAYDDELRRE 359
                 D   R 
Sbjct: 75  FLDQNADRASRR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	588
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.85
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.77
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.74
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.67
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.63
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.6
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.13
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.02
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	94.64
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	94.62
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	94.22
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	91.02
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	90.23

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=4.9e-22  Score=163.74  Aligned_cols=68  Identities=41%  Similarity=0.687  Sum_probs=65.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      +|||+||||++  +||.+|||+|||++++++|||++++++.+++.|++|++||+||+||.+|+.||++|.
T Consensus         3 ~dyY~vLgv~~--~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   70 (75)
T d1xbla_           3 QDYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (75)
T ss_dssp             CCTTTTTCCSS--SCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTT
T ss_pred             CCHHHHcCCCC--CcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Confidence            69999999999  899999999999999999999998878899999999999999999999999999863

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-20  Score=154.24  Aligned_cols=67  Identities=42%  Similarity=0.641  Sum_probs=63.6

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      +|||+||||++  +||.+|||+|||++++++|||+++ ++.+.++|+.|++||+||+||.+|+.||+++.
T Consensus         3 kdyY~iLgv~~--~as~~eIk~ay~~l~~~~hPD~~~-~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~   69 (77)
T d1hdja_           3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCSHHHHTCCT--TCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CChHHHcCCCC--CcCHHHHHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence            69999999999  899999999999999999999997 47899999999999999999999999999763

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=6.3e-20  Score=157.27  Aligned_cols=67  Identities=33%  Similarity=0.570  Sum_probs=62.4

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~------p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      +|||+||||++  +++.+|||+|||+|++++||||++.+      +.++++|+.|++||+||+||++|+.||...
T Consensus        16 ~d~Y~iLgv~~--~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          16 KDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SCHHHHTTCCT--TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             cChHHHcCCCC--CcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            69999999999  89999999999999999999999764      458899999999999999999999999864

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.74  E-value=1.1e-19  Score=160.51  Aligned_cols=66  Identities=27%  Similarity=0.339  Sum_probs=58.7

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR  357 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~~  357 (588)
                      .|||+||||++.+..+.++||+|||+||+++||||+++    .++|++|++||+||+||.+|+.||+.+.
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd~~kR~~YD~~~~   73 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            58999999999333378899999999999999999974    3689999999999999999999998653

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.2e-17  Score=137.30  Aligned_cols=68  Identities=24%  Similarity=0.340  Sum_probs=60.5

Q ss_pred             CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          289 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       289 d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-----~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      |||++|||++..+++.+|||+|||++++++|||++.+.+     .+.+.|+.|++||+||+||.+|+.|+..+
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            799999999965677999999999999999999986542     36788999999999999999999998764

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.63  E-value=5.7e-17  Score=134.65  Aligned_cols=65  Identities=17%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhhhcchhhhchhhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL  356 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p~A~e~Fk~I~~AYevLsD~~kR~~YD~~~  356 (588)
                      .+||+||||++.+..|.+|||+|||++++++|||++.+    +++|++|++||++|+|+.+|..||..+
T Consensus        11 ~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            58999999999444499999999999999999999853    478999999999999999999999754

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-16  Score=134.41  Aligned_cols=63  Identities=30%  Similarity=0.290  Sum_probs=56.2

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhhhcchhhhchhh
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDDE  355 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p-~A~e~Fk~I~~AYevLsD~~kR~~YD~~  355 (588)
                      +++|+||||++  ++|.+|||+|||+|+++||||+|++++ .|+++|+.|++||++|++   +..||+.
T Consensus        16 ~~~y~iL~v~~--~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~   79 (88)
T d1iura_          16 KEVTSVVEQAW--KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQN   79 (88)
T ss_dssp             HHHHHHHHHTT--SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSS
T ss_pred             HHHHHHhCCCC--CCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhcc
Confidence            58999999999  999999999999999999999998774 589999999999999985   5555554

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=2.9e-16  Score=135.28  Aligned_cols=63  Identities=27%  Similarity=0.479  Sum_probs=58.1

Q ss_pred             CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHhhhcchhhhc
Q 007833          288 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFDSFKRKAY  352 (588)
Q Consensus       288 ~d~Y~ILGv~~~~~as~~eIKkAYRklalk~HPDkn~~~p---~A~e~Fk~I~~AYevLsD~~kR~~Y  352 (588)
                      .++|++||+++  .+|.+|||+|||++++++||||+++++   .|++.|+.|++||++|+||.+|+.|
T Consensus        33 ~~~y~~Lgl~~--~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGG--CCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCc--cCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            47899999999  899999999999999999999987643   3788999999999999999999988

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=3.4e-11  Score=99.04  Aligned_cols=77  Identities=19%  Similarity=0.413  Sum_probs=63.7

Q ss_pred             CCCCCcccccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec
Q 007833          393 DDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN  472 (588)
Q Consensus       393 E~~~~isr~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~  472 (588)
                      ++.+.+++.+.|+.|+|+|     .+++..+..|+.|+       |+|++.+..     |++ +++++|+ .|.|.|.++
T Consensus         3 ~k~i~i~~~~~C~~C~G~G-----~~~g~~~~~C~~C~-------G~G~v~~~~-----g~~-~~~~~C~-~C~G~G~~i   63 (79)
T d1exka_           3 TKEIRIPTLEECDVCHGSG-----AKPGTQPQTCPTCH-------GSGQVQMRQ-----GFF-AVQQTCP-HCQGRGTLI   63 (79)
T ss_dssp             TTSCCCCCEEECGGGTTTS-----BCSSSCCEECTTTT-------TSSEEEEEE-----TTE-EEEEECT-TTTTSSEEC
T ss_pred             eEEEEeeeeccCCCCcCcc-----cCCCccceeCCCcc-------ceeEEEEec-----ccc-eeeEECc-ccCcceeEC
Confidence            4678899999999999998     66677788999999       999876522     233 4566899 999999999


Q ss_pred             CcccccCCCceeccce
Q 007833          473 ATDWYICQGMRCPANT  488 (588)
Q Consensus       473 ~~~C~~C~G~G~~~~t  488 (588)
                      .++|..|+|.|++.++
T Consensus        64 ~~~C~~C~G~G~v~kt   79 (79)
T d1exka_          64 KDPCNKCHGHGRVERS   79 (79)
T ss_dssp             SSBCGGGTTSSEEECC
T ss_pred             CCCCCCCCCceEeecC
Confidence            9999999999987653

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=1.2e-10  Score=94.59  Aligned_cols=71  Identities=23%  Similarity=0.459  Sum_probs=57.2

Q ss_pred             cccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceee--cCcccc
Q 007833          400 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--NATDWY  477 (588)
Q Consensus       400 r~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~--~~~~C~  477 (588)
                      |++.|+.|+|+|     .++. ....|+.|+       |+|++.... +++++ +++++.+|+ .|.|.|.+  .+++|+
T Consensus         1 r~v~C~~C~G~G-----~~~~-~~~~C~~C~-------G~G~~~~~~-~~g~~-~~~~~~~C~-~C~G~G~~i~~~~~C~   64 (74)
T d1nlta3           1 KQILCKECEGRG-----GKKG-AVKKCTSCN-------GQGIKFVTR-QMGPM-IQRFQTECD-VCHGTGDIIDPKDRCK   64 (74)
T ss_dssp             EEEECTTTTTCS-----BSTT-TCCCCTTSS-------SSSCEEEEE-ESSSE-EEEEECSCT-TCSSSSSCCCTTSBCS
T ss_pred             CccCCcCCcccc-----cCCC-CCCCCCCCc-------ceeeeeEEE-EecCc-EEEEEEECc-cCccceEEeCCCCCCC
Confidence            578999999998     5543 467899999       999998754 55664 567889999 99999854  467999


Q ss_pred             cCCCceecc
Q 007833          478 ICQGMRCPA  486 (588)
Q Consensus       478 ~C~G~G~~~  486 (588)
                      .|+|.|++.
T Consensus        65 ~C~G~g~v~   73 (74)
T d1nlta3          65 SCNGKKVEN   73 (74)
T ss_dssp             SSTTSCEEE
T ss_pred             CCCCeeEeC
Confidence            999999764

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=94.64  E-value=0.0011  Score=53.64  Aligned_cols=73  Identities=14%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             ccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecCcccccCCCc
Q 007833          403 ACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGM  482 (588)
Q Consensus       403 ~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~~~C~~C~G~  482 (588)
                      .|..|+|.|...  .........|..|+       |+|......+....+.  ...+.|. .|.|.+......|..|++.
T Consensus        13 ~C~~CH~~~~~~--~~~~~~~~~C~~CH-------g~~~~~~~~~~~h~~~--~~c~~CH-~~H~~~~~~~~~C~~CH~~   80 (90)
T d1m1qa_          13 GCESCHKDGTPS--ADGAFEFAQCQSCH-------GKLSEMDAVHKPHDGN--LVCADCH-AVHDMNVGQKPTCESCHDD   80 (90)
T ss_dssp             CGGGTSGGGCCC--SSSHHHHHHHHHHH-------CCGGGSCTTTGGGTTT--CCGGGTC-CTTTSBTTCCCCSTTTCSS
T ss_pred             CCCCcCCCCccc--cCCCCCCCcCcccC-------CCceeEeeccccccCc--cccccCc-cccCCCCcCCCccccccCC
Confidence            599999987100  11111346799998       8886543222222222  2355677 6778888888999999999


Q ss_pred             eeccc
Q 007833          483 RCPAN  487 (588)
Q Consensus       483 G~~~~  487 (588)
                      |+.+.
T Consensus        81 gr~~~   85 (90)
T d1m1qa_          81 GRTSA   85 (90)
T ss_dssp             CCCHH
T ss_pred             Ccccc
Confidence            86544

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.0076  Score=48.05  Aligned_cols=51  Identities=20%  Similarity=0.373  Sum_probs=35.0

Q ss_pred             ccccccccCccceeeeccCcccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeecC
Q 007833          401 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA  473 (588)
Q Consensus       401 ~v~C~kC~GsG~~~~t~k~~~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~~  473 (588)
                      ...|+.|+|+|..............|+.|+       |+|.+.              ..+|+ .|.|.|++.+
T Consensus        28 ~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~-------G~G~~i--------------~~~C~-~C~G~G~v~k   78 (79)
T d1exka_          28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQ-------GRGTLI--------------KDPCN-KCHGHGRVER   78 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTT-------TSSEEC--------------SSBCG-GGTTSSEEEC
T ss_pred             ceeCCCccceeEEEEecccceeeEECcccC-------cceeEC--------------CCCCC-CCCCceEeec
Confidence            456999999984322222223446799999       999652              12699 8999997654

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.006  Score=48.61  Aligned_cols=59  Identities=7%  Similarity=-0.047  Sum_probs=37.3

Q ss_pred             CCCceeecCcccccCCCceeccceeEEEEEeCCcccCCCC-ccccCCCCCCCCCCCCCccccCC
Q 007833          465 CANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHN-TSKGTSSGQRGGRMPPPNLEETM  527 (588)
Q Consensus       465 C~GsGi~~~~~C~~C~G~G~~~~t~~v~V~Vp~Gv~d~~~-r~~g~g~~~~gg~~p~~~~~~~~  527 (588)
                      +.|........|..|.|.+   +.+.++|+||+|+.+++. +.+|.|....++ ++++|++..+
T Consensus        15 ~~G~~k~i~~~r~~~~g~~---~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i   74 (80)
T d1c3ga1          15 FVGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVI   74 (80)
T ss_dssp             HHTCEEEEEEEEEETTTEE---EEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEE
T ss_pred             hCCCceEeecceecccCCC---ceEEEEEEECCCCCCCcEEEECCccccCcCC-CCCCCEEEEE
Confidence            4455544555566677644   567899999999988843 555555544443 3455666555

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.02  E-value=0.04  Score=43.20  Aligned_cols=51  Identities=22%  Similarity=0.485  Sum_probs=33.8

Q ss_pred             cccccccCccceeeeccCc----ccccccccccccccccCCCeeEEEeeccccceeEEEEEecccccCCCceeec
Q 007833          402 IACKKCNNFHVWIETKKSK----ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN  472 (588)
Q Consensus       402 v~C~kC~GsG~~~~t~k~~----~~ar~C~~C~~~h~ak~G~G~Ve~~~q~~~~Gm~qq~q~~C~y~C~GsGi~~  472 (588)
                      ..|+.|+|+|.........    .....|+.|+       |+|.+...            ..+|+ .|.|.|+..
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~-------G~G~~i~~------------~~~C~-~C~G~g~v~   73 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH-------GTGDIIDP------------KDRCK-SCNGKKVEN   73 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS-------SSSSCCCT------------TSBCS-SSTTSCEEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCc-------cceEEeCC------------CCCCC-CCCCeeEeC
Confidence            3599999999644332211    1345799999       99955321            23699 899998653

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.23  E-value=0.076  Score=41.38  Aligned_cols=40  Identities=15%  Similarity=0.190  Sum_probs=27.4

Q ss_pred             cceeEEEEEeCCcccCCCC-ccccCCCCCCCCCCCCCccccCC
Q 007833          486 ANTHKPSFHVNTSVTSKHN-TSKGTSSGQRGGRMPPPNLEETM  527 (588)
Q Consensus       486 ~~t~~v~V~Vp~Gv~d~~~-r~~g~g~~~~gg~~p~~~~~~~~  527 (588)
                      ...+.++|+||+|+.+++. +.+|.|....  +++++|++..+
T Consensus        28 ~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~--~~~~GDl~v~i   68 (74)
T d1nlta1          28 LNRKILEVHVEPGMKDGQRIVFKGEADQAP--DVIPGDVVFIV   68 (74)
T ss_dssp             EEEEEEEEEECTTCCTTCEEEETTCSCCCT--TCBCCCEEEEE
T ss_pred             ecCccEEEEecccccCCeEEEecCCcCCCC--CCCCCCEEEEE
Confidence            3567899999999988853 6666665443  34456666655