Citrus Sinensis ID: 007834

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
MSVSFSSPSVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPKPAVPQVPGINT
ccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHHHHcccccccccHHHHEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEccccccccccccccccccccEEEccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
ccEEEcccccEccEEEEEccccccEEEEEcccEccccHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccEccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
msvsfsspsvvspvylftnnfggnkvkrvsgkclwrnqSRKMVAVVRAgpkkilfgKESREALQAGIDKLADAVsvtlgpkgrnvilsesdklkviNDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQksfpvtgrddiKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGmkidkgylspqfitnqekslvefdnakvlitdqkisTVKEIVPLLekttqlsvpLLIIAEDISSQVLETLVMNKIRGLLNVAVvkcpgfgdgkKALLQDIALMTgadflsgelgltlagatsdqlgIARKvtvksnsttivadpytKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFaamdegivpgggaTYVHLLEHIpiiknsmedpdeqiGADIVAKALIVPAisiatnagvdgTIVVEKTrtsdwrfgynamtGRYEDLlsagvadpcRVARCALQNAVSIAAVVLTTEAVLAdkikqpkpavpqvpgint
msvsfsspsvvspvylftnnfggnkvkrvsgkclwrnqsrkmvaVVRAGPKKILFGKESREALQAGIDKLADavsvtlgpkgrnvilsesdklkvinDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLkqksfpvtgrddIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPllekttqlsvpLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIArkvtvksnsttivadpytkaEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIkvgahteveledrklRIEDAKNAtfaamdegivPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISiatnagvdgtivvektrtsdwrfgyNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVladkikqpkpavpqvpgint
MsvsfsspsvvspvYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLiadaiikigadgviLIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIaavvltteavlaDKIKQPKPAVPQVPGINT
*********VVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILI***********VEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADK****************
*************V*******************************VRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ********DDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLA******************
*********VVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPKPAVPQVPGINT
********SVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIK**************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
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MSVSFSSPSVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPKPAVPQVPGINT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query588 2.2.26 [Sep-21-2011]
Q56XV8575 Chaperonin 60 subunit alp yes no 0.969 0.991 0.726 0.0
P21239546 RuBisCO large subunit-bin N/A no 0.906 0.976 0.656 0.0
P21238586 Chaperonin 60 subunit alp no no 0.894 0.897 0.665 0.0
P08823543 RuBisCO large subunit-bin N/A no 0.908 0.983 0.642 0.0
P08926587 RuBisCO large subunit-bin N/A no 0.925 0.926 0.636 0.0
P34794583 RuBisCO large subunit-bin N/A no 0.952 0.960 0.625 0.0
P08824495 RuBisCO large subunit-bin N/A no 0.841 1.0 0.658 0.0
Q42694580 RuBisCO large subunit-bin N/A no 0.942 0.955 0.569 0.0
Q2JKV7539 60 kDa chaperonin 2 OS=Sy yes no 0.904 0.987 0.530 1e-162
Q2JXD4542 60 kDa chaperonin 1 OS=Sy yes no 0.891 0.966 0.534 1e-161
>sp|Q56XV8|CPNA2_ARATH Chaperonin 60 subunit alpha 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60A2 PE=2 SV=1 Back     alignment and function desciption
 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/589 (72%), Positives = 509/589 (86%), Gaps = 19/589 (3%)

Query: 1   MSVSFSSPSVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESR 60
           +S S  SP+ +SP              R SG+   RN+ RK  +VVRAG K+IL+GK+SR
Sbjct: 4   VSPSSFSPTTISP--------------RRSGQ---RNEPRKF-SVVRAGAKRILYGKDSR 45

Query: 61  EALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLM 120
           E LQAGIDKLADAVS+TLGP+GRNV+L+E D +KVINDGVTIA++IEL DTIENAGA L+
Sbjct: 46  EKLQAGIDKLADAVSITLGPRGRNVVLAEKDTIKVINDGVTIAKSIELPDTIENAGATLI 105

Query: 121 QEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQK 180
           QEVA KMN+ AGDGTTTA+ILAREMIK+G L+++FGAN V++K GM+KTVKELV+VL+ K
Sbjct: 106 QEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRVLQMK 165

Query: 181 SFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMK 240
           S PV G++DIKAVASISAGNDEF+GNLIA+ + KIG DGVI IESSS+ ETS++VEEGMK
Sbjct: 166 SIPVQGKNDIKAVASISAGNDEFVGNLIAETVEKIGPDGVISIESSSTSETSVIVEEGMK 225

Query: 241 IDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDI 300
            DKGY+SP FITNQEKS VEFD AK+L+TDQKI++ KE+VPLLEKT+QLSVPLLIIAEDI
Sbjct: 226 FDKGYMSPHFITNQEKSTVEFDKAKILVTDQKITSAKELVPLLEKTSQLSVPLLIIAEDI 285

Query: 301 SSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATS 360
           S++VLE LV+NK +GL+NVAVVKCPG  DGKKALLQDIALMTGAD+LSG+LG++L GATS
Sbjct: 286 SAEVLEILVVNKKQGLINVAVVKCPGMLDGKKALLQDIALMTGADYLSGDLGMSLMGATS 345

Query: 361 DQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSG 420
           DQLG++R+V + +NSTTIVAD  TK EIQARI Q+KKDLA TDN+YLS+K++ERIAKL+G
Sbjct: 346 DQLGVSRRVVITANSTTIVADASTKPEIQARIAQMKKDLAETDNSYLSKKIAERIAKLTG 405

Query: 421 GVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLLEHIPII-KNSM 479
           GVAVIKVG HTE ELEDRKLRIEDAKNATFAAM EGIVPGGGATY+HLL+ IP I KN M
Sbjct: 406 GVAVIKVGGHTETELEDRKLRIEDAKNATFAAMREGIVPGGGATYIHLLDEIPRIKKNLM 465

Query: 480 EDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAMTGRYEDLLSA 539
           ED  EQIGADIVA AL  PA++IATNAGVDG++VV+KTR  +WR GYNAM+G+YEDLL+A
Sbjct: 466 EDSYEQIGADIVAMALTAPAMAIATNAGVDGSVVVQKTRELEWRSGYNAMSGKYEDLLNA 525

Query: 540 GVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPKPAVPQVPGINT 588
           G+ADPCRV+R ALQNAVS+A ++LTT+AVL +KIKQPKPAVPQVPGI T
Sbjct: 526 GIADPCRVSRFALQNAVSVAGIILTTQAVLVEKIKQPKPAVPQVPGIPT 574
Involved in protein assisted folding.
Arabidopsis thaliana (taxid: 3702)
>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2 Back     alignment and function description
>sp|P21238|CPNA1_ARATH Chaperonin 60 subunit alpha 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60A1 PE=1 SV=2 Back     alignment and function description
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|P08824|RUBA_RICCO RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description
>sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
357475213579 RuBisCO large subunit-binding protein su 0.920 0.934 0.805 0.0
255574519556 rubisco subunit binding-protein alpha su 0.935 0.989 0.791 0.0
297737979583 unnamed protein product [Vitis vinifera] 0.962 0.970 0.801 0.0
225423680602 PREDICTED: chaperonin 60 subunit alpha 2 0.933 0.911 0.815 0.0
124301264595 GroEL-like chaperone, ATPase [Medicago t 0.896 0.885 0.808 0.0
449455391587 PREDICTED: chaperonin 60 subunit alpha 2 0.991 0.993 0.758 0.0
356519784548 PREDICTED: ruBisCO large subunit-binding 0.921 0.989 0.808 0.0
297807919575 EMB3007 [Arabidopsis lyrata subsp. lyrat 0.969 0.991 0.730 0.0
15239580575 TCP-1/cpn60 chaperonin family protein [A 0.969 0.991 0.726 0.0
356577105589 PREDICTED: ruBisCO large subunit-binding 0.892 0.891 0.809 0.0
>gi|357475213|ref|XP_003607892.1| RuBisCO large subunit-binding protein subunit alpha [Medicago truncatula] gi|355508947|gb|AES90089.1| RuBisCO large subunit-binding protein subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/541 (80%), Positives = 487/541 (90%)

Query: 46  VRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARA 105
           VRA PKKI FGKE RE LQ GIDKLADAVS+T+GPKGRNVILSES KLKVINDGVTIAR+
Sbjct: 37  VRASPKKISFGKECRENLQVGIDKLADAVSLTVGPKGRNVILSESGKLKVINDGVTIARS 96

Query: 106 IELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKG 165
           IELSD IENAGAML+QEVASKMNDLAGDGT+TA+ILAR MIKSG+ +V+FGANP++LKKG
Sbjct: 97  IELSDAIENAGAMLIQEVASKMNDLAGDGTSTAIILARAMIKSGLSAVAFGANPISLKKG 156

Query: 166 MHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIES 225
           M KTVK+LVK LK++S PV GRD IKAVASISAGNDE++GNLIA+AI KIG DGVI IES
Sbjct: 157 MEKTVKDLVKFLKKRSIPVEGRDHIKAVASISAGNDEYVGNLIAEAIEKIGFDGVITIES 216

Query: 226 SSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEK 285
           S S ETS+V+EEGMKID+GY+SP FITNQEKS+VEFDNAKVL+TDQKIS+V+EIVPLLEK
Sbjct: 217 SRSSETSVVIEEGMKIDRGYMSPHFITNQEKSIVEFDNAKVLVTDQKISSVREIVPLLEK 276

Query: 286 TTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGAD 345
             QLS PLLIIAED+++QVLETL++NK++GLL VA VKCPG GDGKKALLQDIALMTGAD
Sbjct: 277 AMQLSAPLLIIAEDVTAQVLETLIVNKMQGLLRVAAVKCPGLGDGKKALLQDIALMTGAD 336

Query: 346 FLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNA 405
           FL G+LGLTL G TSDQLG A KV + SN+TTI ADP TKAEIQARI+QIKKDL  TDNA
Sbjct: 337 FLCGDLGLTLEGTTSDQLGSALKVKITSNATTIFADPNTKAEIQARILQIKKDLIETDNA 396

Query: 406 YLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATY 465
             SRKLSERIAKL+GG+AVIKVGAHTE+ELEDRKLRIEDAKNATFAA++EG+VPGGGATY
Sbjct: 397 NHSRKLSERIAKLTGGIAVIKVGAHTELELEDRKLRIEDAKNATFAAINEGLVPGGGATY 456

Query: 466 VHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFG 525
           VHLL+ IP IKNSMED DEQIGADIVAKAL+ PA SIA NAGVDG +VVEKTRT DWR G
Sbjct: 457 VHLLDLIPAIKNSMEDLDEQIGADIVAKALVEPAKSIAANAGVDGDVVVEKTRTFDWRIG 516

Query: 526 YNAMTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPKPAVPQVPG 585
           YNAMTG YEDLL+AGVADP RVARCALQ+AVSIA VVLTT+A+L DK+K+PKP VP VPG
Sbjct: 517 YNAMTGTYEDLLNAGVADPSRVARCALQSAVSIAGVVLTTQAILVDKVKKPKPRVPLVPG 576

Query: 586 I 586
           I
Sbjct: 577 I 577

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574519|ref|XP_002528171.1| rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis] gi|223532428|gb|EEF34222.1| rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737979|emb|CBI27180.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225423680|ref|XP_002276547.1| PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|124301264|gb|ABC75363.2| GroEL-like chaperone, ATPase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449455391|ref|XP_004145436.1| PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356519784|ref|XP_003528549.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297807919|ref|XP_002871843.1| EMB3007 [Arabidopsis lyrata subsp. lyrata] gi|297317680|gb|EFH48102.1| EMB3007 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239580|ref|NP_197383.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] gi|75283542|sp|Q56XV8.1|CPNA2_ARATH RecName: Full=Chaperonin 60 subunit alpha 2, chloroplastic; Short=CPN-60 alpha 2; AltName: Full=Protein EMBRYO DEFECTIVE 3007; Flags: Precursor gi|62320478|dbj|BAD94998.1| chaperonin 60 alpha chain - like protein [Arabidopsis thaliana] gi|332005233|gb|AED92616.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356577105|ref|XP_003556668.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
TAIR|locus:2144955575 Cpn60alpha2 "chaperonin-60alph 0.938 0.96 0.727 1.2e-209
TAIR|locus:2057841586 CPN60A "chaperonin-60alpha" [A 0.920 0.923 0.626 2.6e-173
TAIR|locus:2193839600 CPN60B "chaperonin 60 beta" [A 0.940 0.921 0.453 1.9e-124
UNIPROTKB|Q05972541 groL1 "60 kDa chaperonin 1" [S 0.904 0.983 0.463 1.7e-123
TAIR|locus:2092825596 Cpn60beta2 "chaperonin-60beta2 0.914 0.902 0.457 4e-122
TIGR_CMR|GSU_3340544 GSU_3340 "60 kDa chaperonin" [ 0.899 0.972 0.458 5.1e-122
TIGR_CMR|CHY_0807540 CHY_0807 "chaperonin GroL" [Ca 0.911 0.992 0.463 8.3e-122
TIGR_CMR|BA_0267544 BA_0267 "chaperonin, 60 kDa" [ 0.904 0.977 0.469 1.2e-120
TIGR_CMR|CJE_1356545 CJE_1356 "co-chaperonin GroEL" 0.903 0.974 0.457 7.9e-117
UNIPROTKB|P0A335540 groL "60 kDa chaperonin" [Stre 0.891 0.970 0.449 2.4e-115
TAIR|locus:2144955 Cpn60alpha2 "chaperonin-60alpha2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2027 (718.6 bits), Expect = 1.2e-209, P = 1.2e-209
 Identities = 403/554 (72%), Positives = 475/554 (85%)

Query:    36 RNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKV 95
             RN+ RK  +VVRAG K+IL+GK+SRE LQAGIDKLADAVS+TLGP+GRNV+L+E D +KV
Sbjct:    22 RNEPRKF-SVVRAGAKRILYGKDSREKLQAGIDKLADAVSITLGPRGRNVVLAEKDTIKV 80

Query:    96 INDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSF 155
             INDGVTIA++IEL DTIENAGA L+QEVA KMN+ AGDGTTTA+ILAREMIK+G L+++F
Sbjct:    81 INDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAF 140

Query:   156 GANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXX 215
             GAN V++K GM+KTVKELV+VL+ KS PV G++DIKAVASISAGNDEF+GNL        
Sbjct:   141 GANAVSVKNGMNKTVKELVRVLQMKSIPVQGKNDIKAVASISAGNDEFVGNLIAETVEKI 200

Query:   216 XXXXXXLIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKIST 275
                    IESSS+ ETS++VEEGMK DKGY+SP FITNQEKS VEFD AK+L+TDQKI++
Sbjct:   201 GPDGVISIESSSTSETSVIVEEGMKFDKGYMSPHFITNQEKSTVEFDKAKILVTDQKITS 260

Query:   276 VKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALL 335
              KE+VPLLEKT+QLSVPLLIIAEDIS++VLE LV+NK +GL+NVAVVKCPG  DGKKALL
Sbjct:   261 AKELVPLLEKTSQLSVPLLIIAEDISAEVLEILVVNKKQGLINVAVVKCPGMLDGKKALL 320

Query:   336 QDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQI 395
             QDIALMTGAD+LSG+LG++L GATSDQLG++R+V + +NSTTIVAD  TK EIQARI Q+
Sbjct:   321 QDIALMTGADYLSGDLGMSLMGATSDQLGVSRRVVITANSTTIVADASTKPEIQARIAQM 380

Query:   396 KKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDE 455
             KKDLA TDN+YLS+K++ERIAKL+GGVAVIKVG HTE ELEDRKLRIEDAKNATFAAM E
Sbjct:   381 KKDLAETDNSYLSKKIAERIAKLTGGVAVIKVGGHTETELEDRKLRIEDAKNATFAAMRE 440

Query:   456 GIVPGGGATYVHLLEHIPIIK-NSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVV 514
             GIVPGGGATY+HLL+ IP IK N MED  EQIGADIVA AL  PA++IATNAGVDG++VV
Sbjct:   441 GIVPGGGATYIHLLDEIPRIKKNLMEDSYEQIGADIVAMALTAPAMAIATNAGVDGSVVV 500

Query:   515 EKTRTSDWRFGYNAMTGRYEDLLSAGVADPCRVARCALQNAVSIXXXXXXXXXXXXDKIK 574
             +KTR  +WR GYNAM+G+YEDLL+AG+ADPCRV+R ALQNAVS+            +KIK
Sbjct:   501 QKTRELEWRSGYNAMSGKYEDLLNAGIADPCRVSRFALQNAVSVAGIILTTQAVLVEKIK 560

Query:   575 QPKPAVPQVPGINT 588
             QPKPAVPQVPGI T
Sbjct:   561 QPKPAVPQVPGIPT 574
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0006457 "protein folding" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2057841 CPN60A "chaperonin-60alpha" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0267 BA_0267 "chaperonin, 60 kDa" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|P0A335 groL "60 kDa chaperonin" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.53080.90470.9870yesno
Q8YVS8CH602_NOSS1No assigned EC number0.53940.89790.9428yesno
A8G6T6CH602_PROM2No assigned EC number0.48790.90470.9761yesno
B0CFQ6CH601_ACAM1No assigned EC number0.53450.89960.9480yesno
A0T0H6CH60_PHATCNo assigned EC number0.48380.88940.9812yesno
Q07201CH60_GEOSENo assigned EC number0.50650.90130.9833N/Ano
B8E1A9CH60_DICTDNo assigned EC number0.50940.89280.9758yesno
Q7WVY0CH602_ANASLNo assigned EC number0.53270.90300.9533N/Ano
P22034CH602_SYNY3No assigned EC number0.52510.90130.9601N/Ano
A2BYG1CH602_PROM5No assigned EC number0.48330.90470.9779yesno
P34794RUB2_BRANANo assigned EC number0.62560.95230.9605N/Ano
Q7TV93CH602_PROMANo assigned EC number0.50190.88430.9541yesno
P21239RUB1_BRANANo assigned EC number0.65670.90640.9761N/Ano
Q42694RUBA_CHLRENo assigned EC number0.56930.94210.9551N/Ano
Q0I7U3CH602_SYNS3No assigned EC number0.50380.88430.9576yesno
Q7MBB4CH602_GLOVINo assigned EC number0.53590.89450.9511yesno
P08823RUBA_WHEATNo assigned EC number0.64290.90810.9834N/Ano
Q3AZK3CH601_SYNS9No assigned EC number0.50.89960.9724yesno
A2BT10CH602_PROMSNo assigned EC number0.48790.90470.9761yesno
A2C4I2CH602_PROM1No assigned EC number0.49530.90810.9834yesno
Q7TUS4CH602_PROMMNo assigned EC number0.49060.89960.9724yesno
Q318V6CH602_PROM9No assigned EC number0.48420.90470.9761yesno
B7H4Q7CH60_BACC4No assigned EC number0.50280.89620.9687yesno
B7GFR6CH60_ANOFWNo assigned EC number0.50270.90470.9888yesno
Q119S1CH601_TRIEINo assigned EC number0.54680.88600.9286yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.54320.89790.9428yesno
Q5N3T6CH602_SYNP6No assigned EC number0.52060.90130.9549yesno
Q2JXD4CH601_SYNJANo assigned EC number0.53490.89110.9667yesno
P0A338CH602_THEVLNo assigned EC number0.52810.89790.9723N/Ano
P0A337CH602_THEEBNo assigned EC number0.52810.89790.9723yesno
Q56XV8CPNA2_ARATHNo assigned EC number0.72660.96930.9913yesno
A5CZ03CH60_PELTSNo assigned EC number0.49620.89110.9632yesno
A3PES4CH602_PROM0No assigned EC number0.48610.90470.9761yesno
A5GNA9CH602_SYNPWNo assigned EC number0.50370.89960.9724yesno
A2C6Z6CH601_PROM3No assigned EC number0.49240.89960.9724yesno
Q46J70CH601_PROMTNo assigned EC number0.50570.88430.9576yesno
P08926RUBA_PEANo assigned EC number0.63610.92510.9267N/Ano
P08824RUBA_RICCONo assigned EC number0.65850.84181.0N/Ano
Q7TTX1CH601_SYNPXNo assigned EC number0.50180.89960.9724yesno
Q3AHM4CH602_SYNSCNo assigned EC number0.49810.89960.9724yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
CHL00093529 CHL00093, groEL, chaperonin GroEL 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.0
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.0
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-172
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-167
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-153
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-139
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-118
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-108
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 4e-29
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 2e-11
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 2e-11
cd03343517 cd03343, cpn60, cpn60 chaperonin family 2e-11
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 2e-11
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-10
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 4e-10
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-09
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 3e-09
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 7e-09
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-08
cd03343517 cd03343, cpn60, cpn60 chaperonin family 3e-08
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 3e-08
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 4e-08
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 4e-08
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 2e-07
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 5e-07
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 9e-07
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-06
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 3e-06
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 5e-06
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 2e-05
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 8e-05
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 2e-04
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 2e-04
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 7e-04
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  720 bits (1861), Expect = 0.0
 Identities = 277/522 (53%), Positives = 374/522 (71%), Gaps = 3/522 (0%)

Query: 51  KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELS 109
           K I FG+E+R+AL  G++KLADAV VTLGPKGRNV++ +S    K+  DGVT+A+ IEL 
Sbjct: 1   KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60

Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
           D  EN GA L++EVASK ND+AGDGTTTA +LAR +IK G+ +V+ GANP+ LK+G+ K 
Sbjct: 61  DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120

Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSF 229
           V+ +V+ LK+ S PV  +++I  VA+ISA  DE IG LIA+A+ K+G DGVI +E   + 
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180

Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
           ET + V EGM+ D+GYLSP F+T+ EK  VE +N  +L+TD+KIS+++E++P+LE   + 
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240

Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
             PLLIIAED+  + L TLV+NK+RG L V  VK PGFGD +KA+L+DIA++TG   +S 
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300

Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
           ELGL L   T + LG A+KV V  + TTI+     KA I+ARI QI+K +  T + Y   
Sbjct: 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360

Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
           KL ER+AKLSGGVAVIKVG  TEVEL+++K R+EDA NAT AA++EGIVPGGG   +   
Sbjct: 361 KLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRAS 420

Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
             +  +K    + DE++G +IV +AL  P   IA NAGVDG++VVEK   S   FGY+A 
Sbjct: 421 PALDKLKA--LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPDGFGYDAA 478

Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLAD 571
           TG Y D++ AG+ DP +V R ALQNA S+A+++LTTEA++ D
Sbjct: 479 TGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 588
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.96
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.95
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.15
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 97.27
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1e-112  Score=946.19  Aligned_cols=527  Identities=50%  Similarity=0.785  Sum_probs=510.5

Q ss_pred             cchhhcCHHHHHHHHHHHHHHHHhhhccCCCCCcceeeec-CCCeEEecCHHHHHhhcccccchhhHHhHHHHHHHHhhh
Q 007834           50 PKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN  128 (588)
Q Consensus        50 ~~~~~~g~~a~~~~~~~~~~la~~v~stlGP~G~~kmI~~-~g~~~ITnDG~tIlk~i~l~hp~~~~~akLl~~~a~~qd  128 (588)
                      .|.+.||.+++..+++|+..++++++|||||+||+|||++ .|+++|||||+||+++|+++||.+|++|+|++++|++||
T Consensus         2 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd   81 (542)
T PRK12849          2 AKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTN   81 (542)
T ss_pred             CccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             hhcCCCcchhHHHHHHHHHHHHhhhhCCCCcHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhcCCchhHHHHH
Q 007834          129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLI  208 (588)
Q Consensus       129 ~~~GDGTTsvvvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li  208 (588)
                      +++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++|+++.++|.++|+||+++++.+++++
T Consensus        82 ~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv  161 (542)
T PRK12849         82 DVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELI  161 (542)
T ss_pred             CccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHHHHhccCCcEEEecCCCcccceeeeeceEEeeccCCcccccccccccccccceeEEEeccccccHHhHHHHHHHHhc
Q 007834          209 ADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQ  288 (588)
Q Consensus       209 ~dA~~~v~~~g~I~v~~g~~~~dsl~li~Gi~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~l~~~le~i~~  288 (588)
                      ++|+..++++|.|.++.|++++|++++++|++|+++|.||+|.++.+.|+++++||+|+++|+.|++++++.++++++.+
T Consensus       162 ~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~  241 (542)
T PRK12849        162 AEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQ  241 (542)
T ss_pred             HHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHH
Confidence            99999999888889999999998669999999999999999999888899999999999999999999999999999999


Q ss_pred             CCCCEEEEecCCchHHHHHHHHHhhhccceEEEeeCCCCCCChhHHHHHHHHHhCCeEeeccCCCcccCCCCccceeEEE
Q 007834          289 LSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARK  368 (588)
Q Consensus       289 ~~~~lvI~~~~i~~~al~~L~~n~l~g~~~i~aVk~~~~~~~~~~~Le~ia~~tG~~ii~~~~~~~l~~l~~~~lG~~~~  368 (588)
                      +|+||||++++|+++|+++|.+|+++|.++|+|||+|++++.|+++|+|||.+|||++++++.+.+++++++++||+|+.
T Consensus       242 ~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~  321 (542)
T PRK12849        242 SGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKR  321 (542)
T ss_pred             hCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeE
Confidence            99999999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             EEEecceEEEEeCCCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 007834          369 VTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNA  448 (588)
Q Consensus       369 v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~er~~~l~~~~~tI~v~G~t~~~~~E~~~~i~DAl~~  448 (588)
                      |+++++++++++++++++.++.|+++|+++++++.++|++++|+||+++|+++.+||+|||+|+.+++|++|+++||+|+
T Consensus       322 v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~  401 (542)
T PRK12849        322 VTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNA  401 (542)
T ss_pred             EEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcccCCchHHHHHHHhhhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHhhhcCCCceeEEc
Q 007834          449 TFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNA  528 (588)
Q Consensus       449 ~r~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~vl~~l~~~~~~~Gid~  528 (588)
                      +|+++++|+|||||++|++++.+|.+++ +.++.+ ++++++|++||+.||++||+|||+|+.+++++|++.++++|||+
T Consensus       402 ~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~-~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~~~~G~d~  479 (542)
T PRK12849        402 TRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQ-AAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELEDGFGFNA  479 (542)
T ss_pred             HHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhCCCcceeC
Confidence            9999999999999999999999999988 666654 69999999999999999999999999999999998777899999


Q ss_pred             cCCcccccccCccccchHHHHHHHHHHHHHHHHHHchhHHhhCCCCCCCCC
Q 007834          529 MTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPKPA  579 (588)
Q Consensus       529 ~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~~p~~~~~  579 (588)
                      .+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.+ |+...|
T Consensus       480 ~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~-~~~~~~  529 (542)
T PRK12849        480 ATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADK-PEEEDP  529 (542)
T ss_pred             CCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcC-CccCCC
Confidence            99999999999999999999999999999999999999999998 865444

>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-127
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-122
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-121
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-114
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-114
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-114
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-114
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-114
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-113
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-113
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-113
1ss8_A524 Groel Length = 524 1e-113
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-113
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-113
1oel_A547 Conformational Variability In The Refined Structure 1e-112
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-112
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-112
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-109
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 1e-45
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 6e-45
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 2e-44
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-44
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 7e-44
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 2e-36
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 3e-35
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 7e-34
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 2e-28
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 5e-14
3izh_A513 Mm-Cpn D386a With Atp Length = 513 8e-14
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 2e-13
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 3e-13
1a6d_A545 Thermosome From T. Acidophilum Length = 545 1e-09
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-09
3izi_A513 Mm-Cpn Rls With Atp Length = 513 3e-08
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 3e-08
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 3e-08
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 8e-05
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 3e-08
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 2e-05
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 4e-08
1a6d_B543 Thermosome From T. Acidophilum Length = 543 4e-08
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-07
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-07
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-07
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-07
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-06
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-06
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-06
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 3e-06
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-06
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-05
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-05
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-05
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-05
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-05
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-04
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-04
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  453 bits (1165), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/511 (47%), Positives = 341/511 (66%), Gaps = 5/511 (0%)
Query: 51  KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELS 109
           K ++F + +R AL+ G++ +A+AV VTLGP+GRNV+L +      +  DGVT+A+ +EL 
Sbjct: 3   KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
           D +EN GA L++EVASK ND+AGDGTTTA +LA+ +++ G+ +V+ GANP+ALK+G+ K 
Sbjct: 63  DHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
           V+  V+ +K  + PV  R  I+ VA+ISA ND  +G L               +E S S 
Sbjct: 123 VEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSL 181
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
           ET +   EG + DKGY+SP F+TN E      ++A +LI ++K+S V+E++P+LE+  Q 
Sbjct: 182 ETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT 241
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
             PLLIIAED+  + L TLV+NK+RG L+VA VK PGFGD +K +L+DIA +TG   +S 
Sbjct: 242 GKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISE 301
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
           ELG  L  AT   LG A +V +  + TTIV     K +I+ARI  IKK+L  TD+ Y   
Sbjct: 302 ELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYARE 361
Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
           KL ER+AKL+GGVAVI+VGA TE EL+++K R EDA NAT AA++EGIVPGGG T +  +
Sbjct: 362 KLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAI 421
Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEK--TRTSDWRFGYN 527
             +  +   +E  DE  GA IV +AL  PA  IA NAG +G+++V++    T + R+G+N
Sbjct: 422 SAVEELIKKLEG-DEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFN 480
Query: 528 AMTGRYEDLLSAGVADPCRVARCALQNAVSI 558
           A TG + D++ AG+ DP +V R ALQNA SI
Sbjct: 481 AATGEFVDMVEAGIVDPAKVTRSALQNAASI 511
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 5e-78
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 9e-77
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-57
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 3e-25
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 7e-22
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-21
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 3e-21
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 4e-20
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 6e-20
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 9e-20
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 2e-19
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 3e-19
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 5e-17
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 7e-08
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 6e-17
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 4e-05
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 1e-16
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 3e-16
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 6e-06
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 3e-16
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 8e-05
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 9e-16
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 2e-04
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-15
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 2e-15
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 2e-15
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 4e-05
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 6e-15
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-04
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 2e-14
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-04
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-13
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 6e-04
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 2e-13
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
 Score =  668 bits (1725), Expect = 0.0
 Identities = 231/536 (43%), Positives = 344/536 (64%), Gaps = 3/536 (0%)

Query: 51  KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVI-NDGVTIARAIELS 109
           K + FG ++   +  G++ LADAV VTLGPKGRNV+L +S     I  DGV++AR IEL 
Sbjct: 3   KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62

Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
           D  EN GA +++EVASK ND AGDGTTTA +LA+ +I  G+ +V+ G NP+ LK+G+ K 
Sbjct: 63  DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122

Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSF 229
           V   V+ LK  S P +    I  V +ISA +DE +G LIA+A+ K+G +GVI +E  +  
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182

Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
           +  + V EGM+ D+GYLSP FI   E   VE ++  +L+ D+KIS ++E++P+LE   + 
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242

Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
             PLLIIAED+  + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG   +S 
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302

Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
           E+G+ L  AT + LG A++V +  ++TTI+     +A IQ R+ QI++ +    + Y   
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362

Query: 410 KLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLL 469
           KL ER+AKL+GGVAVIKVGA TEVE++++K R+EDA +AT AA++EG+V GGG   + + 
Sbjct: 363 KLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVA 422

Query: 470 EHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNAM 529
             +  ++   ++ D+ +G  +  +A+  P   I  N G + ++V    +  D  +GYNA 
Sbjct: 423 SKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 480

Query: 530 TGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPKPAVPQVPG 585
           T  Y +++  G+ DP +V R ALQ A S+A +++TTE ++ D  K     +    G
Sbjct: 481 TEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGG 536
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query588
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.89
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.81
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=1.6e-123  Score=1030.95  Aligned_cols=525  Identities=43%  Similarity=0.719  Sum_probs=512.8

Q ss_pred             cchhhcCHHHHHHHHHHHHHHHHhhhccCCCCCcceeeec-CCCeEEecCHHHHHhhcccccchhhHHhHHHHHHHHhhh
Q 007834           50 PKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN  128 (588)
Q Consensus        50 ~~~~~~g~~a~~~~~~~~~~la~~v~stlGP~G~~kmI~~-~g~~~ITnDG~tIlk~i~l~hp~~~~~akLl~~~a~~qd  128 (588)
                      +|++.||.++|.+|++||+.|+++|+|||||+||+|||++ .|+|+|||||+||+|+|+++||+||+||||++++|++||
T Consensus         2 ~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd   81 (547)
T 1kp8_A            2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN   81 (547)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhc
Confidence            6899999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             hhcCCCcchhHHHHHHHHHHHHhhhhCCCCcHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhcCCchhHHHHH
Q 007834          129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLI  208 (588)
Q Consensus       129 ~~~GDGTTsvvvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li  208 (588)
                      +++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++|+++.++|.++|++|++++++|++++
T Consensus        82 ~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~li  161 (547)
T 1kp8_A           82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLI  161 (547)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCcEEEecCCCcccceeeeeceEEeeccCCcccccccccccccccceeEEEeccccccHHhHHHHHHHHhc
Q 007834          209 ADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQ  288 (588)
Q Consensus       209 ~dA~~~v~~~g~I~v~~g~~~~dsl~li~Gi~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~l~~~le~i~~  288 (588)
                      +||+.+++++|.|++++|++++||+++++||+|+++|+||||++++++|+++++||||+++|++|+++++++++++++.+
T Consensus       162 adAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~~  241 (547)
T 1kp8_A          162 AEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK  241 (547)
T ss_dssp             HHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHHG
T ss_pred             HHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEecCCchHHHHHHHHHhhhccceEEEeeCCCCCCChhHHHHHHHHHhCCeEeeccCCCcccCCCCccceeEEE
Q 007834          289 LSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARK  368 (588)
Q Consensus       289 ~~~~lvI~~~~i~~~al~~L~~n~l~g~~~i~aVk~~~~~~~~~~~Le~ia~~tG~~ii~~~~~~~l~~l~~~~lG~~~~  368 (588)
                      +|+||||++++|+++|+++|+.|+++|.++|+|||+|+||+.++.+|+|||++|||++++++.|++++++++++||+|+.
T Consensus       242 ~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~  321 (547)
T 1kp8_A          242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKR  321 (547)
T ss_dssp             GGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEE
T ss_pred             cCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             EEEecceEEEEeCCCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Q 007834          369 VTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNA  448 (588)
Q Consensus       369 v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~er~~~l~~~~~tI~v~G~t~~~~~E~~~~i~DAl~~  448 (588)
                      |+++++++++|+||++++.+++|+++|+.+++.++++|+||+|+||+++|++++|||+|||+|+.+++|+||++|||||+
T Consensus       322 v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~  401 (547)
T 1kp8_A          322 VVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA  401 (547)
T ss_dssp             EEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcccCCchHHHHHHHhhhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHhhhcCCCceeEEc
Q 007834          449 TFAAMDEGIVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTSDWRFGYNA  528 (588)
Q Consensus       449 ~r~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~vl~~l~~~~~~~Gid~  528 (588)
                      +|+++++|+|||||++|++|+.+|++++. .. .++++++++|++||+.||++||+|||+|+.+++++|++.+.++|||+
T Consensus       402 ~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~-g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~~~~~G~d~  479 (547)
T 1kp8_A          402 TRAAVEEGVVAGGGVALIRVASKLADLRG-QN-ADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNA  479 (547)
T ss_dssp             HHHHHHHCEEETTTHHHHHHHHHTTTCCC-SS-HHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHSCTTEEEET
T ss_pred             HHHhccCCEEeCCcHHHHHHHHHHHHHhc-cC-chHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCEeEeC
Confidence            99999999999999999999999999876 44 45679999999999999999999999999999999998778899999


Q ss_pred             cCCcccccccCccccchHHHHHHHHHHHHHHHHHHchhHHhhCCCCCCC
Q 007834          529 MTGRYEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLADKIKQPK  577 (588)
Q Consensus       529 ~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~~p~~~  577 (588)
                      .+|++.||++.|||||+.||+++|++|+++|++||++|++|..+ |+++
T Consensus       480 ~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~-~~~~  527 (547)
T 1kp8_A          480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL-PKND  527 (547)
T ss_dssp             TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC-CC--
T ss_pred             CCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecC-CccC
Confidence            99999999999999999999999999999999999999999998 8765
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 588
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 9e-70
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 2e-69
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 7e-67
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 4e-57
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-43
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-27
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-36
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-22
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 6e-34
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 9e-30
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-30
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 3e-12
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-22
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-17
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 4e-22
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 5e-20
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-15
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 7e-20
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 4e-18
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 1e-15
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 0.004
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 1e-15
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 6e-10
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 4e-15
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 1e-10
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score =  221 bits (564), Expect = 9e-70
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 238 GMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIA 297
           GM+ DKGY+S  F+T+ E+     ++  +L+   K+STVK+++PLLEK      PLLIIA
Sbjct: 1   GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60

Query: 298 EDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAG 357
           ED+  + L TLV+NKIRG      VK PGFGD +KA+LQD+A++TG   +S E+GLTL  
Sbjct: 61  EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120

Query: 358 ATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAK 417
           A    LG ARKV V  + TTIV        I  R+ QI++++  +D+ Y   KL ER+AK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180

Query: 418 LSGG 421
           L+GG
Sbjct: 181 LAGG 184
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query588
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.97
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.96
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.82
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.78
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.78
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.78
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.72
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.51
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.29
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.25
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.17
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.61
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.6
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.56
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.1
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.38
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 95.81
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=7.6e-50  Score=398.33  Aligned_cols=237  Identities=27%  Similarity=0.447  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcceeeec-CCCeEEecCHHHHHhhcccccchhhHHhHHHHHHHHhhhhhcCCCcc
Q 007834           58 ESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTT  136 (588)
Q Consensus        58 ~a~~~~~~~~~~la~~v~stlGP~G~~kmI~~-~g~~~ITnDG~tIlk~i~l~hp~~~~~akLl~~~a~~qd~~~GDGTT  136 (588)
                      ++++.|++|+..++++|++||||+||+|||++ .|+++|||||+||++++.++||.    |+++++++++|++++|||||
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGtt   77 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQDSFVGDGTT   77 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchH----HHHHHHHHHHHHHHhhcCCc
Confidence            78999999999999999999999999999999 99999999999999999999995    99999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhhCCCCcHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Q 007834          137 TAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIG  216 (588)
Q Consensus       137 svvvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~dA~~~v~  216 (588)
                      |+++|+++||+++.+++..|+||..|++||++|++.+++.|++++.++.                               
T Consensus        78 t~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~-------------------------------  126 (243)
T d1a6db1          78 TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIA-------------------------------  126 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECE-------------------------------
T ss_pred             chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccc-------------------------------
Confidence            9999999999999999999999999999999999999886654422210                               


Q ss_pred             cCCcEEEecCCCcccceeeeeceEEeeccCCcccccccccccccccceeEEEeccccccHHhHHHHHHHHhcCCCCEEEE
Q 007834          217 ADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLII  296 (588)
Q Consensus       217 ~~g~I~v~~g~~~~dsl~li~Gi~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~l~~~le~i~~~~~~lvI~  296 (588)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCchHHHHHHHHHhhhccceEEEeeCCCCCCChhHHHHHHHHHhCCeEeeccCCCcccCCCCccceeEEEEEEecceE
Q 007834          297 AEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNST  376 (588)
Q Consensus       297 ~~~i~~~al~~L~~n~l~g~~~i~aVk~~~~~~~~~~~Le~ia~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~~~~~~~  376 (588)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007834          377 TIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEG  456 (588)
Q Consensus       377 ~~i~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~er~~~l~~~~~tI~v~G~t~~~~~E~~~~i~DAl~~~r~al~~g  456 (588)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCchHHHHHHHhhhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHhhhcC----CCceeEEccCCc
Q 007834          457 IVPGGGATYVHLLEHIPIIKNSMEDPDEQIGADIVAKALIVPAISIATNAGVDGTIVVEKTRTS----DWRFGYNAMTGR  532 (588)
Q Consensus       457 vvpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~vl~~l~~~----~~~~Gid~~~g~  532 (588)
                      ++||||++|++++.+|.++++++.+.+ ++++++|++||+.||++|++|+|+|+.+++.+|+..    +.++|+|+.+|+
T Consensus       127 ~~~ggGa~e~~~a~~l~~~a~~~~g~~-q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~  205 (243)
T d1a6db1         127 YAAGGGATAAEIAFRLRSYAQKIGGRQ-QLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGE  205 (243)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHTCSSH-HHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTE
T ss_pred             cccCCCchhHHHHHHHhhhhhccCCHH-HHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCE
Confidence            113799999999999999999888876 589999999999999999999999999999999873    778999999999


Q ss_pred             ccccccCccccchHHHHHHHHHHHHHHHHHHchhHHhh
Q 007834          533 YEDLLSAGVADPCRVARCALQNAVSIAAVVLTTEAVLA  570 (588)
Q Consensus       533 i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~  570 (588)
                      +.||.+.|||||+.+|+++|+.|+|+|++|||||+||.
T Consensus       206 i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         206 IEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             EEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             EeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999873
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure