Citrus Sinensis ID: 007860

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
Protein Sequence
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccEEEcccccccccccEEEcccccccccccccEEEccccccccccEEEccccccEEEEEEEEEEcccccccccccEEEEEccEEEEEEEcccccccccccEEEEEEEEEccccEEEEEEEccccccEEEEEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHcccccEEEEEccccccccEEEEEEEEccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEEcccccEEEEcccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccEEEEEEEccccccEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccHHHHHcccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEcccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEEccccHcccccccccccccccccccccEEEEcccccccccEEEEEcccccEEEEEEEEEEccccccccccEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEEcccccccccccccccEEEEEEEEccccccccccEEEccccccccEEccccccccccccccccEccccccccccccccccccHHHHHHcccccccEEEEccccccccEEEEEEEEEHHHccccccEEEEEEEEcccEccccccccccccEEEEEcccccccccEEEEEEEccccccccEEEHHHHEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccEEEEEEcccccccccccHHHHHHHHccEEEccccccccccccHccccccEEEEcccccccccccHHHHccccccEEEEccccccccccHHHHHcccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
msllspssfFFLSLLLVLPlslassypykasyridcgsatsttdpfnttwqaddryytsgatsivseplhfrfphektlryfppssgkkncyiipnlppgryyirtftvydnydgkshspsfdvsvegtlvfswrspwpeglardgaySDLFAFvkdgeldlcfysfatdppviaslevqqidplsydaatignnhILVNygrltsgsnqwgpgfsndaddfgrswqsdaasrspnakssiksvttreritntnqppnyypmklYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVndknvtrvdIFNSVGSFAAYSWHYVAKNlssteltvKLVPVVGAALISglenyalvpndlstVPEQVIAMRALKEslrvpdrmgwngdpcaptnwdawegitchpnkdeTAVVISQIDlgsqglkgyiSDKISLLSNLVNLnlstnslggtlpsglgqqslvrldlsdnqftgsipdsltssSKLQLVLLNNnllegrvpeelysigvhggaFDLSVVYICCIrrgrndydfglpqdlMSLSAKRNRYQRQKSLMLLEMESqhakglptlplnpr
Flexible Loop (DISEMBL)
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGsatsttdpfnttwQADDRYYTSGATSIVSEPLHFRFPHEKTlryfppssgkkncYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWqsdaasrspnakssiksvttreritntnqppnyypMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKEslrvpdrmgwNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEmesqhakglptlplnpr
Low Complexity Region (SEG)
MsllspssffflslllvlplslassYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKIsllsnlvnlnlstnslggtlPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKlqlvllnnnllEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
Disordered region (IsUnstruct)
*******SFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQW**********************************************NYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL********LVRL*******************KLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDL*************************************
Disordered Region (DISOPRED)
******S**FFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP****
Disordered Region (DISEMBL)
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRS********************TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
Disordered Region (DISPRO)
*SLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	587	2.2.26 [Sep-21-2011]
Q9FZB1	872	Probable LRR receptor-lik	no	no	0.727	0.489	0.286	1e-32
Q9ZQQ7	886	Putative leucine-rich rep	no	no	0.797	0.528	0.255	8e-31
Q9LIG2	899	Receptor-like protein kin	no	no	0.821	0.536	0.274	9e-30
O81069	884	Probable leucine-rich rep	no	no	0.737	0.489	0.268	1e-29
Q9FZB8	871	Probable LRR receptor-lik	no	no	0.826	0.556	0.254	1e-28
C0LGT5	866	Probable LRR receptor-lik	no	no	0.664	0.450	0.271	1e-28
Q9FN94	868	Receptor-like protein kin	no	no	0.741	0.501	0.274	2e-28
C0LGD8	864	Probable LRR receptor-lik	no	no	0.747	0.508	0.279	6e-28
Q9SNA3	889	Putative receptor-like pr	no	no	0.739	0.488	0.266	1e-27
C0LGD6	852	Probable LRR receptor-lik	no	no	0.710	0.489	0.286	5e-26

>sp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 144/502 (28%), Positives = 230/502 (45%), Gaps = 75/502 (14%)

Query: 34  IDCG----SATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEK-TLRYFPPSSGK 88
           +DCG    +AT T    N T+++D  Y  SG    +S     +   +  T+R FP   G+
Sbjct: 32  LDCGLVPKNATYTEKTTNITYKSDANYIDSGLVGRISAEYKAQLQQQTWTVRSFP--EGE 89

Query: 89  KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAY 148
           +NCY        RY IR    Y NYDG    P FD+ +  +    W S   +G+  +GA 
Sbjct: 90  RNCYNFNLTAKSRYLIRATFTYGNYDGLRQVPKFDIHIGPS---KWTSVKLDGVG-NGAV 145

Query: 149 SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGS 208
            ++   +    L +C        P I+SLE++ ++  +Y    +  +  L+ + R+   +
Sbjct: 146 LEMIHVLTQDRLQICLVKTGKGIPFISSLELRPLNNNTY----LTQSGSLIGFARVFFSA 201

Query: 209 NQWGPGFSN-DADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQT 267
               P F   D D   R W            + +KS++T   +  +N  P   P  + +T
Sbjct: 202 T---PTFIRYDEDIHDRVWVRQFG-------NGLKSISTDLLVDTSN--PYDVPQAVAKT 249

Query: 268 AIVSSGAIQYNLAVDAKLDYL-----IWFHFAEI----DSSVTK------AGQRVFDILV 312
           A V S A Q  L  D  LD +     ++ HFAEI    D+ + +       GQ V+  L 
Sbjct: 250 ACVPSNASQ-PLIFDWTLDNITSQSYVYMHFAEIQTLKDNDIREFNITYNGGQNVYSYLR 308

Query: 313 NDKNVTRVDIFNSV------GSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366
            +K      +F+S       GSF+          LS T+     +P     LI+GLE Y 
Sbjct: 309 PEKFEIST-LFDSKPLSSPDGSFS----------LSFTKTGNSTLP----PLINGLEIYK 353

Query: 367 LVP-NDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC-HPNKDETAV 424
           ++   +L T  ++V AM  +K +  +  ++ W GDPCAP ++  WEG+ C +PN D+  +
Sbjct: 354 VLDLLELETDQDEVSAMINIKATYDLSKKVSWQGDPCAPKSYQ-WEGLNCSYPNSDQPRI 412

Query: 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRL-DLSDN-Q 482
           +   ++L    L G I+ +IS L+ L+ L+LS N L G +P       L++L +LS N  
Sbjct: 413 I--SLNLAENKLTGTITPEISKLTQLIELDLSKNDLSGEIPEFFADMKLLKLINLSGNLG 470

Query: 483 FTGSIPDSLTS---SSKLQLVL 501
              +IPDS+     S  L L+L
Sbjct: 471 LNSTIPDSIQQRLDSKSLILIL 492

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZQQ7|Y2144_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1

 Score =  135 bits (341), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 138/541 (25%), Positives = 234/541 (43%), Gaps = 73/541 (13%)

Query: 7   SSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTT---DPF-NTTWQADDRYYTSGAT 62
           S    L+      +SL  S   +    + CG  ++ +   +P  N T+ +D  +   G T
Sbjct: 5   SKLMLLACATFSIISLVKSQNQQGFISLYCGLPSNESPYIEPLTNLTYISDVNFVRGGKT 64

Query: 63  SIVSEPLHFRFPHE--KTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSP 120
             +       F     K LRYFP   G +NCY +      +Y IRT   Y NYDG + SP
Sbjct: 65  GNIKNNSDIDFTSRPYKVLRYFP--EGIRNCYSLSVKQGTKYLIRTLFFYGNYDGLNTSP 122

Query: 121 SFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEV 179
            FD+ +   +   W S   + +   DG   ++    +   LD+C     T  P+I+++E+
Sbjct: 123 RFDLFLGPNI---WTSVDVQKVDGGDGVIEEIIHVTRCNILDICLVKTGTTTPMISAIEL 179

Query: 180 QQIDPLSYDA--ATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNA 237
           +   PL YD   A  G+   ++++    SG     P      D + R W        P++
Sbjct: 180 R---PLRYDTYTARTGSLKKILHFYFTNSGKEVRYP-----EDVYDRVW-------IPHS 224

Query: 238 KSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGA---IQYNLAVDAKLDYL-IWFHF 293
           +     + T   ++  +   N  P  + +TA + +     + +    ++  D    + +F
Sbjct: 225 QPEWTQINTTRNVSGFSDGYNP-PQDVIKTASIPTNVSEPLTFTWMSESSDDETYAYLYF 283

Query: 294 AEIDSSVTKAGQ-RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVP 352
           AEI     KA + R F ILVN                  Y   Y+ +   +  L      
Sbjct: 284 AEIQQ--LKANETRQFKILVN----------------GVYYIDYIPRKFEAETLITPAAL 325

Query: 353 VVGAAL----------------ISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRM 395
             G  +                ++ +E ++++    S T  ++VIA++ ++ + +V  R+
Sbjct: 326 KCGGGVCRVQLSKTPKSTLPPQMNAIEIFSVIQFPQSDTNTDEVIAIKNIQSTYKV-SRI 384

Query: 396 GWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNL 455
            W GDPC P  + +W G++C+     T   I  +DL S GL G I+  I  L+ L  L+L
Sbjct: 385 SWQGDPCVPIQF-SWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPSIQNLTMLRELDL 443

Query: 456 STNSLGGTLPSGLGQQSLVR-LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
           S N+L G +P  L   +++R LDLS+N  TG +P+ L +   L ++ L  N L G VP+ 
Sbjct: 444 SNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQA 503

Query: 515 L 515
           L
Sbjct: 504 L 504

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LIG2|RLK6_ARATH Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1

 Score =  132 bits (331), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 145/528 (27%), Positives = 235/528 (44%), Gaps = 46/528 (8%)

Query: 20  LSLASSYPYKASYRIDCGSATSTTDPFN-----TTWQADDRYYTSGATSIVSEPLH--FR 72
           L L  +   K    +DCGS  +   P+N      T+  DD +  SG T  + +     F 
Sbjct: 22  LHLVEAQDQKGFISLDCGSLPNE-PPYNDPSTGLTYSTDDGFVQSGKTGRIQKAFESIFS 80

Query: 73  FPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVF 132
            P  K LRYFP   G +NCY +       Y I+   VY NYDG ++ PSFD+ +   L  
Sbjct: 81  KPSLK-LRYFP--DGFRNCYTLNVTQDTNYLIKAVFVYGNYDGLNNPPSFDLYLGPNL-- 135

Query: 133 SWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATI 192
            W +    G   +G   ++        L +C     T  P+I +LE++ +   +Y+  + 
Sbjct: 136 -WVTVDMNGRT-NGTIQEIIHKTISKSLQVCLVKTGTSSPMINTLELRPLKNNTYNTQS- 192

Query: 193 GNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQS--DAASRSPNAKSSIKSVTTRERI 250
           G+      Y    SG N   P   ND     R W    DA   +         +TT   I
Sbjct: 193 GSLKYFFRYYFSGSGQNIRYPDDVND-----RKWYPFFDAKEWT--------ELTTNLNI 239

Query: 251 TNTN--QPPNYYPMKLYQTAIVSSGAIQYN-LAVDAKLDYLIWFHFAEIDSSVTKAGQRV 307
            ++N   PP    M    T I + G   ++ L   +   + ++ HFAEI + +     R 
Sbjct: 240 NSSNGYAPPEVV-MASASTPISTFGTWNFSWLLPSSTTQFYVYMHFAEIQT-LRSLDTRE 297

Query: 308 FDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366
           F + +N K    R            YS     ++ +      K        L++ LE + 
Sbjct: 298 FKVTLNGKLAYERYSPKTLATETIFYSTPQQCEDGTCLLELTKTPKSTLPPLMNALEVFT 357

Query: 367 LVP-NDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVV 425
           ++    + T P+ V A+++++ +  +  ++ W GDPC P  +  WEG+ C+   + T  +
Sbjct: 358 VIDFPQMETNPDDVAAIKSIQSTYGL-SKISWQGDPCVPKQF-LWEGLNCNNLDNSTPPI 415

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++ ++L S  L G I+  I  L++L  L+LS N+L G +P  L   +SL+ ++LS N F 
Sbjct: 416 VTSLNLSSSHLTGIIAQGIQNLTHLQELDLSNNNLTGGIPEFLADIKSLLVINLSGNNFN 475

Query: 485 GSIPDSLTSSSKLQLVLLNN-NLLEGRVPEEL-YSIGVHGGAFDLSVV 530
           GSIP  L     L+L+L  N NL+    P+ L  +   +GGA  ++VV
Sbjct: 476 GSIPQILLQKKGLKLILEGNANLI---CPDGLCVNKAGNGGAKKMNVV 520

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O81069|Y2899_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 224/491 (45%), Gaps = 58/491 (11%)

Query: 34  IDCGSATSTT---DPFN-TTWQADDRYYTSGATSIVSEPLHFRFPHEK-TLRYFPPSSGK 88
           +DCG  +  +   D FN  T+ +D  +  +G    V + L+     +  TLRYFP   GK
Sbjct: 28  LDCGLPSDESPYDDSFNGLTFTSDSTFIQTGKIDSVDKDLNINLSKQYLTLRYFP--EGK 85

Query: 89  KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAY 148
           +NCY +       Y I    VY NYDG +  P+FD+ +       W+    +G  ++G  
Sbjct: 86  RNCYSLDVKRGTTYLIVVSFVYGNYDGLNRDPNFDIHLGPN---KWKRIDLDG-EKEGTR 141

Query: 149 SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGS 208
            ++    +   LD+C        P+I+++E++   PL  +     +  +++++    S S
Sbjct: 142 EEIIHKARSNSLDICLVKTGETLPIISAIEIR---PLRNNTYVTQSGSLMMSFRVYLSNS 198

Query: 209 NQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTA 268
           +     +++D  D  R W       SP   SS   +TT   I N+N      P  + QTA
Sbjct: 199 DA-SIRYADDVHD--RIW-------SPFNGSSHTHITTDLNINNSNAYE--IPKNILQTA 246

Query: 269 IVSSGA-----IQYN-LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDI 322
            +   A     I ++ L ++A++   ++ HFAEI  ++     R FD+++          
Sbjct: 247 AIPRNASAPLIITWDPLPINAEV--YLYMHFAEI-QTLEANETRQFDVILRGN------- 296

Query: 323 FNSVG-------SFAAYSWHYVAKNLSSTELTVKLVPVVGAAL---ISGLENYALVP-ND 371
           FN  G        F  Y+         S    ++LV    + L   I+ +E Y+++  + 
Sbjct: 297 FNHSGFSPTKLKVFTLYTEE--PMKCGSEGCYLQLVKTPNSTLPPLINAIEAYSVIEFSQ 354

Query: 372 LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDL 431
           L T    V A++ +K + ++ +++ W GDPC P +  +WE I C      T+  I  +DL
Sbjct: 355 LETSLSDVDAIKNIKNTYKL-NKITWQGDPCLPQDL-SWESIRCTYVDGSTSPTIISLDL 412

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-QQSLVRLDLSDNQFTGSIPDS 490
              GL G I   +   + L  L+LS NSL G +P  L   ++L  ++LS N  +GS+P +
Sbjct: 413 SKSGLNGSIPQILQNFTQLQELDLSNNSLTGPVPIFLANMKTLSLINLSGNNLSGSVPQA 472

Query: 491 LTSSSKLQLVL 501
           L    K  LVL
Sbjct: 473 LLDKEKEGLVL 483

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZB8|Y5181_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 146/574 (25%), Positives = 254/574 (44%), Gaps = 89/574 (15%)

Query: 9   FFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNT-----TWQADDRYYTSGATS 63
            FF+   L+L L  A   P      +DCG +   + P+       T+ +DD +  SG   
Sbjct: 6   LFFVIFSLILHLVQAQD-PI-GFINLDCGLSIQGS-PYKESSTGLTYTSDDGFVQSGKIG 62

Query: 64  IVSEPLHFRFPH-EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSF 122
            +++ L   +   E+TLRYFP   G +NC+ +      +Y I+   +Y NYDG++  P F
Sbjct: 63  KITKELESLYKKPERTLRYFP--DGVRNCFSLNVTRGTKYLIKPTFLYGNYDGRNVIPDF 120

Query: 123 DVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQI 182
           D+ +   +   W +     +  D    ++    K   L +C     T  P I +LE++  
Sbjct: 121 DLYIGPNM---WIT-----VNTDNTIKEILHVSKSNTLQVCLVKTGTSIPYINTLELR-- 170

Query: 183 DPLSYDAATIGNNHILVNYGRLTSGSNQWG-PGFSNDADDFGRSWQSDAASRSPNAKSSI 241
            PL+ D  T  N    +NY      SN  G   + +D  D  R W+     +        
Sbjct: 171 -PLADDIYT--NESGSLNYLFRVYYSNLKGYIEYPDDVHD--RIWKQILPYQD------W 219

Query: 242 KSVTTRERITNTNQPPNY-YPMKLYQTAIVSSGAIQYNLAVDAKLD-----YLIWFHFAE 295
           + +TT  +I  +N   +Y  P ++ +TA+    A    +     L+     + ++ HFAE
Sbjct: 220 QILTTNLQINVSN---DYDLPQRVMKTAVTPIKASTTTMEFPWNLEPPTSQFYLFLHFAE 276

Query: 296 IDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVA---------KNLSSTEL 346
           + S +     R F++++N  NVT          F +YS  ++          K     + 
Sbjct: 277 LQS-LQANETREFNVVLNG-NVT----------FKSYSPKFLEMQTVYSTAPKQCDGGKC 324

Query: 347 TVKLVPVVGAAL---ISGLENYALVP-NDLSTVPEQVIAMRALKESLRVPDRMGWNGDPC 402
            ++LV    + L   I+ +E Y ++    + T  ++VIA++ ++ +  +  +  W GDPC
Sbjct: 325 LLQLVKTSRSTLPPLINAMEAYTVLDFPQIETNVDEVIAIKNIQSTYGL-SKTTWQGDPC 383

Query: 403 APTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG 462
            P  +  W+G+ C+ + D T  +I+ ++L S GL G I   I  L+NL  L+LS N+L G
Sbjct: 384 VPKKF-LWDGLNCNNSDDSTPPIITSLNLSSSGLTGIIVLTIQNLANLQELDLSNNNLSG 442

Query: 463 TLPSGLG-QQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH 521
            +P  L   +SL+ ++LS N  +G +P  L     L+L +  N  L   V E   +    
Sbjct: 443 GVPEFLADMKSLLVINLSGNNLSGVVPQKLIEKKMLKLNIEGNPKLNCTV-ESCVNKDEE 501

Query: 522 GG------------------AFDLSVVYICCIRR 537
           GG                  AF ++++  C +R+
Sbjct: 502 GGRQIKSMTIPIVASIGSVVAFTVALMIFCVVRK 535

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT5|Y5169_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 193/445 (43%), Gaps = 55/445 (12%)

Query: 79  LRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPW 138
           LRYFP   G +NCY +  L   RY I+   VY NYDG +  PSFD+ +       W    
Sbjct: 77  LRYFP--DGLRNCYTLDVLQNRRYMIKAVFVYGNYDGYNDYPSFDLYLGPN---KWVRVD 131

Query: 139 PEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHIL 198
            EG   +G+  ++        L +C        P I++LE++ +   +Y    +   H+ 
Sbjct: 132 LEGKV-NGSVEEIIHIPSSNSLQICLVKTGNSLPFISALELRLLRNDTYVVQDVSLKHLF 190

Query: 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPN 258
             Y R +    ++        D + R W       SP        +TT   + N+N   N
Sbjct: 191 RRYYRQSDRLIRY------PDDVYDRVW-------SPFFLPEWTQITTSLDVNNSN---N 234

Query: 259 YYPMKLYQTAIVSSGAIQYNLAVDAKLD-----YLIWFHFAEI-------DSSVTKAGQR 306
           Y P K   T+  + G     L +   LD       ++ HFAE+       D ++     R
Sbjct: 235 YEPPKAALTSAATPGDNGTRLTIIWTLDNPDEQIHLYVHFAELEPVGENTDEALRTLFTR 294

Query: 307 VFDILVN-----DKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLV-----PVVGA 356
            F  +VN     D+++T +D+       A  +   V         +++LV     P V  
Sbjct: 295 TFYFVVNGKISYDESITPLDL-------AVSTVETVVNKCDGGNCSLQLVRSEASPGVRV 347

Query: 357 ALISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415
            L++ +E +  +    S T P+ VI+++ ++ +  +  R+ W GDPC P  +  W G+ C
Sbjct: 348 PLVNAMEAFTAIKFPHSETNPDDVISIKVIQATYEL-SRVDWQGDPCLPQQF-LWTGLNC 405

Query: 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-QQSLV 474
                 T+  I  +DL S  L G I   I  L+ L  L+LS N L G +P  L   +SL+
Sbjct: 406 SYMNMSTSPRIISLDLSSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLL 465

Query: 475 RLDLSDNQFTGSIPDSLTSSSKLQL 499
            ++LS+N   GSIP +L     L+L
Sbjct: 466 FINLSNNNLVGSIPQALLDRKNLKL 490

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN94|RLK7_ARATH Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 212/496 (42%), Gaps = 61/496 (12%)

Query: 34  IDCGSATSTTDPFNTT-----WQADDRYYTSGATSIVSEPLHFRF--PHEKTLRYFPPSS 86
           +DCG   + T P+  T     + +D  +  SG T  V      +F  P+ +TLRYFP   
Sbjct: 31  LDCGLPANETSPYTETQTGLLFSSDATFIQSGKTGRVQANQESKFLKPY-RTLRYFP--E 87

Query: 87  GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD- 145
           G +NCY +      +Y I    +Y NYDG + +P FD+ +   L       W +   +D 
Sbjct: 88  GVRNCYNLSVFKERKYLIAASFLYGNYDGHNIAPVFDLYLGPNL-------WAKIDLQDV 140

Query: 146 -GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRL 204
            G   ++        L +C        P+I+SLE++ +   SY   +      L  Y RL
Sbjct: 141 NGTGEEILHIPTSNSLQICLVQTGETTPLISSLELRPMRTGSYTTVSGS----LKTYRRL 196

Query: 205 TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTN--QPPNYYPM 262
               +  G       D + RSW        P        ++T   + NTN  QPP    +
Sbjct: 197 YFKKS--GSRLRYSKDVYDRSW-------FPRFMDEWTQISTALGVINTNIYQPPED-AL 246

Query: 263 KLYQTAIVSSGAIQYNLAVDAKLD--YLIWFHFAEIDSSVTKAGQRVFDILVNDKNVT-- 318
           K   T   +S  + +    + KLD  Y  + H+AEI   +     R F+IL+N +N++  
Sbjct: 247 KNAATPTDASAPLTFKWNSE-KLDVQYYFYAHYAEIQD-LQANDTREFNILLNGQNLSVT 304

Query: 319 --------RVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPN 370
                    +  F S    +   W   A N          +P     L++ LE Y ++  
Sbjct: 305 GPEVPDKLSIKTFQSSSPISCNGW---ACNFQLIRTKRSTLP----PLLNALEVYTVIQF 357

Query: 371 DLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQI 429
             S   E  V+AM+ +  S  +  R+ W GDPC P     W+ + C          I+ +
Sbjct: 358 PRSETDESDVVAMKNISASYGL-SRINWQGDPCFPQQL-RWDALDCTNRNISQPPRITSL 415

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +L S  L G I+  I  ++ L  L+LS N+L G +P  LG+ +SL  ++LS N   GSIP
Sbjct: 416 NLSSSRLNGTIAAAIQSITQLETLDLSYNNLTGEVPEFLGKMKSLSVINLSGNNLNGSIP 475

Query: 489 DSLTSSSKLQLVLLNN 504
            +L    +L+L L  N
Sbjct: 476 QAL-RKKRLKLYLEGN 490

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD8|Y1755_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1

 Score =  126 bits (316), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 144/516 (27%), Positives = 227/516 (43%), Gaps = 77/516 (14%)

Query: 20  LSLASSYPYKASYRIDCGSATSTTDPFNT-----TWQADDRYYTSGATSIVSEPLHFRFP 74
           L L  S   +    +DCG A S   P+N      T+ +D  +   G T  V + L  +  
Sbjct: 18  LHLVQSQNQQGFISLDCGLA-SNESPYNEANSNLTYISDADFIQGGKTGNVQKDLLMKLR 76

Query: 75  HEKT-LRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFS 133
              T LRYFP   G +NCY +       Y IR    Y NYDG ++SP FD+ +   +   
Sbjct: 77  KPYTVLRYFP--DGIRNCYSLNVKQDTNYLIRVMFRYGNYDGLNNSPRFDLYLGPNI--- 131

Query: 134 WRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIG 193
           W +    G + DG   ++    +   LD+C     T  P+I+S+E++   PL YD   I 
Sbjct: 132 W-TTIDMGKSGDGVLEEIIHITRSNILDICLVKTGTSTPMISSIELR---PLLYDTY-IA 186

Query: 194 NNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASR--SPNAKSSIKSVTTRERIT 251
               L NY R           +  D++++ R +  D   R   P        + T   + 
Sbjct: 187 QTGSLRNYNRF----------YFTDSNNYIR-YPQDVHDRIWVPLILPEWTHINTSHHVI 235

Query: 252 NT--NQPPNYYPMKLYQTAIVSSGA-----IQYNL--AVDAKLDYLIWFHFAEIDSSVTK 302
           ++     P   P  + +T  + + A     I +NL  A D    Y+      E+ ++ T 
Sbjct: 236 DSIDGYDP---PQDVLRTGAMPANASDPMTITWNLKTATDQVYGYIYIAEIMEVQANET- 291

Query: 303 AGQRVFDILVNDK------NVTRVD---IFNSV-----GSFAAYSWHYVAKNLSSTELTV 348
              R F+++VN+K        TR +   +FN+V     G F       + K   ST    
Sbjct: 292 ---REFEVVVNNKVHFDPFRPTRFEAQVMFNNVPLTCEGGFCRLQ---LIKTPKST---- 341

Query: 349 KLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNW 407
            L P++ A  + +G+E     P    T    VIA++ ++ S  + +R+ W GDPC P  +
Sbjct: 342 -LPPLMNAFEIFTGIE----FPQS-ETNQNDVIAVKNIQASYGL-NRISWQGDPCVPKQF 394

Query: 408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG 467
             W G++C+     T   I ++DL S GL G I   I  L+ L  L+LS N+L G +P  
Sbjct: 395 -LWTGLSCNVIDVSTPPRIVKLDLSSSGLNGVIPPSIQNLTQLQELDLSQNNLTGKVPEF 453

Query: 468 LGQQS-LVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           L +   L+ ++LS N+ +G +P +L    K  L LL
Sbjct: 454 LAKMKYLLVINLSGNKLSGLVPQALLDRKKEGLKLL 489

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SNA3|Y3463_ARATH Putative receptor-like protein kinase At3g46340 OS=Arabidopsis thaliana GN=At3g46340 PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 209/491 (42%), Gaps = 57/491 (11%)

Query: 34  IDCGSATSTTDPF-----NTTWQADDRYYTSGATSIVSEPLHFR-FPHEKTLRYFPPSSG 87
           +DCG   +   P+        + +D  +  SG    V +           TLRYFP   G
Sbjct: 35  LDCGLPPNEVSPYIEPFTGLRFSSDSSFIQSGKIGKVDKSFEATTLKSYMTLRYFP--DG 92

Query: 88  KKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
           K+NCY +       Y IR   +Y NYDG + SP FD+ +       W +    G    G 
Sbjct: 93  KRNCYNLIVKQGKTYMIRATALYGNYDGLNISPKFDLYIGANF---W-TTLDAGEYLSGV 148

Query: 148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSG 207
             ++    +   LD+C     T  P ++ LE++   PL  D+   G+   L  + R    
Sbjct: 149 VEEVNYIPRSNSLDVCLVKTDTSTPFLSLLELR---PLDNDSYLTGSGS-LKTFRRYYLS 204

Query: 208 SNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQT 267
           +++    +  D  D  R W+       P   S  K + T  +  N+N      P  +  T
Sbjct: 205 NSESVIAYPEDVKD--RIWE-------PTFDSEWKQIWTTLKPNNSNG--YLVPKNVLMT 253

Query: 268 AIV---SSGAIQYNLAVDAKLDYL-IWFHFAEIDSSVTKAGQRVFDILVNDK-------- 315
           A +    S   ++   +D+  D L ++ HF+E+  S+     R FDIL + +        
Sbjct: 254 AAIPANDSAPFRFTEELDSPTDELYVYLHFSEV-QSLQANESREFDILWSGEVAYEAFIP 312

Query: 316 ---NVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVP-ND 371
              N+T +     V          + +  +ST             LI+ +E Y +V    
Sbjct: 313 EYLNITTIQTNTPVTCPGGKCNLELKRTKNSTH----------PPLINAIEFYTVVNFPQ 362

Query: 372 LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDL 431
           L T    V+A++ +K +  + +R+ W GDPC P  +  WEG+ C+     T   I+ ++L
Sbjct: 363 LETNETDVVAIKDIKATYEL-NRITWQGDPCVPQKF-IWEGLDCNSKDALTLPRITSLNL 420

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-QQSLVRLDLSDNQFTGSIPDS 490
            S GL G I+  I  L++L  L+LS N+L G +P  L   +SL  ++LS N   GSIP +
Sbjct: 421 SSTGLTGNIAAGIQNLTHLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQA 480

Query: 491 LTSSSKLQLVL 501
           L    K  L L
Sbjct: 481 LLKREKDGLKL 491

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD6|Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1

 Score =  119 bits (299), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 76/493 (15%)

Query: 34  IDCGSATSTTDPFNTT---WQADDRYYTSGATSIVSEPLHFRFPHE-KTLRYFPPSSGKK 89
           IDCG  + ++   +TT   + +D  +  +G    VS+ + F    + + LR FP   G +
Sbjct: 34  IDCGIPSGSSYKDDTTGINYVSDSSFVETG----VSKSIPFTAQRQLQNLRSFP--EGSR 87

Query: 90  NCY-IIPNLPPGR-YYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
           NCY +IP    G+ Y IR   +Y NYDG++ SP FD+ + G +       W   L  +G+
Sbjct: 88  NCYTLIPIQGKGKKYLIRASFMYGNYDGENGSPEFDLFLGGNI-------WDTVLLSNGS 140

Query: 148 --YSDLFAFVKDGE-LDLCFYSFATDPPVIASLEVQQI--DPLSYDAATIGNNHILVNYG 202
              S    ++   E + +C  +     P I++LE++ +  D  +YD+     N  L  + 
Sbjct: 141 SIVSKEVVYLSQSENIFVCLGNKGKGTPFISTLELRFLGNDNTTYDSP----NGALF-FS 195

Query: 203 RLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYP- 261
           R     +  G     D D + R W        P      + + T   +T+ N   N Y  
Sbjct: 196 RRWDLRSLMGSPVRYDDDVYDRIW-------IPRNFGYCREINTSLPVTSDN---NSYSL 245

Query: 262 ----MKLYQTAIVSSGAIQYNLA-VDAKLDYLIWFHFAEIDSSVTKAGQ-RVFDILVNDK 315
               M    T I ++  I   L   D  + Y ++ HFAE++    K  Q R FDI +N  
Sbjct: 246 SSLVMSTAMTPINTTRPITMTLENSDPNVRYFVYMHFAEVEDLSLKPNQTREFDISINGV 305

Query: 316 NVTRVDIFNSVGSFAAYSWHYVAKNL------SSTELTVKLVPVVGAAL---ISGLENYA 366
            V            A +S  Y+  N       S +++   LV    + L   ++ LE Y 
Sbjct: 306 TVA-----------AGFSPKYLQTNTFFLNPESQSKIAFSLVRTPKSTLPPIVNALEIY- 353

Query: 367 LVPNDLS---TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETA 423
            V N  S   T  E   A+ +LK S +V  +  W+GDPC P ++  WEG+ C  +   T 
Sbjct: 354 -VANSFSQSLTNQEDGDAVTSLKTSYKV--KKNWHGDPCLPNDY-IWEGLNCSYDS-LTP 408

Query: 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVR-LDLSDNQ 482
             I+ ++L S GL G+IS   S L+ +  L+LS N L G +P  L +   +R L+L +N 
Sbjct: 409 PRITSLNLSSSGLTGHISSSFSNLTMIQELDLSNNGLTGDIPEFLSKLKFLRVLNLENNT 468

Query: 483 FTGSIPDSLTSSS 495
            TGS+P  L   S
Sbjct: 469 LTGSVPSELLERS 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
449445156	626	PREDICTED: putative leucine-rich repeat	0.967	0.907	0.672	0.0
225423893	630	PREDICTED: Di-glucose binding protein wi	0.977	0.911	0.661	0.0
255566849	674	serine-threonine protein kinase, plant-t	0.897	0.781	0.693	0.0
449526481	591	PREDICTED: receptor-like protein kinase	0.909	0.903	0.659	0.0
356499717	636	PREDICTED: putative leucine-rich repeat	0.931	0.860	0.644	0.0
356498336	642	PREDICTED: putative leucine-rich repeat	0.940	0.859	0.632	0.0
42562316	628	Di-glucose binding protein with Leucine-	0.940	0.878	0.653	0.0
357488299	632	Receptor-like protein kinase [Medicago t	0.967	0.898	0.620	0.0
356574639	626	PREDICTED: probable LRR receptor-like se	0.977	0.916	0.586	0.0
12320747	585	hypothetical protein [Arabidopsis thalia	0.856	0.859	0.618	0.0

>gi|449445156|ref|XP_004140339.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Cucumis sativus]

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/617 (67%), Positives = 476/617 (77%), Gaps = 49/617 (7%)

Query: 16  LVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPH 75
           ++ P S+++ YP+  SY IDCG   ++TDPF TTW +D R+YT G T+IVSEPL FR P 
Sbjct: 12  VITPSSISAPYPFSISYHIDCGGLINSTDPFGTTWLSD-RFYTGGTTAIVSEPLIFRHPQ 70

Query: 76  EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWR 135
           EK LR+FP SSGKKNCYIIPNLP GRYY RTFTVYDNYDGKSH PSFD S+EGTLVFSWR
Sbjct: 71  EKNLRFFPLSSGKKNCYIIPNLPTGRYYFRTFTVYDNYDGKSHPPSFDASIEGTLVFSWR 130

Query: 136 SPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNN 195
           SPW E LAR GAYSDLFAF+ DGE D CFYS +TD PVI S ++ Q+DP+SY++  IG N
Sbjct: 131 SPWSEDLARHGAYSDLFAFIGDGEADFCFYSLSTDSPVIGSFQLVQVDPMSYNSTAIGEN 190

Query: 196 HILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQ 255
            ILVNYGRLT GS QWGPGFSND D FGRSWQSD+    P+ K S++ ++T + ++  +Q
Sbjct: 191 FILVNYGRLTCGSEQWGPGFSNDTDVFGRSWQSDSIFIIPSLKQSVRVLSTAKSVSGADQ 250

Query: 256 PPNYYPMKLYQTAIV--SSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN 313
            PNY+PMKLYQ A+    +G ++Y L VDAKLDYL+W HFAEIDSSV KAGQRVFD+++N
Sbjct: 251 QPNYFPMKLYQKAVTVGGTGVLEYELPVDAKLDYLVWLHFAEIDSSVKKAGQRVFDVVIN 310

Query: 314 DKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS 373
             N TR+DIF  VGSFAAYSW Y  KNLSS+ L+VKLV VVG+ L+SGLENYALVP DLS
Sbjct: 311 GNNATRIDIFAKVGSFAAYSWSYTMKNLSSSALSVKLVGVVGSPLLSGLENYALVPRDLS 370

Query: 374 TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGS 433
           T PEQV AMRALKESLRVP RMGWNGDPCAPTNWDAWEGITC PNK+ TA+VI QIDLGS
Sbjct: 371 TAPEQVSAMRALKESLRVPGRMGWNGDPCAPTNWDAWEGITCRPNKNATALVIFQIDLGS 430

Query: 434 QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTS 493
           QGLKGYISD+I LL+NLV+LNLS+NSLGGT+P GLG+ SL RLDLS NQ TGSIPDSL +
Sbjct: 431 QGLKGYISDQIVLLTNLVSLNLSSNSLGGTIPPGLGEHSLTRLDLSKNQLTGSIPDSL-A 489

Query: 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS------------------------- 528
           S  LQLV+LN+NLLEGRVPEELYSIGVHGGA DLS                         
Sbjct: 490 SRNLQLVILNDNLLEGRVPEELYSIGVHGGAIDLSSNKGLCGVPSLPTCPLFWEHGRLSK 549

Query: 529 -------------------VVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLL 569
                              ++YICCIRR RNDYDFGLP +L+SL+AKRNRYQRQKSLMLL
Sbjct: 550 TGKIAIALSSTFLFCALLAIIYICCIRRSRNDYDFGLPSELLSLAAKRNRYQRQKSLMLL 609

Query: 570 EMESQHAKGL-PTLPLN 585
           EMESQHAKGL P  PLN
Sbjct: 610 EMESQHAKGLSPFTPLN 626

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423893|ref|XP_002281668.1| PREDICTED: Di-glucose binding protein with Leucine-rich repeat domain-like [Vitis vinifera] gi|297737862|emb|CBI27063.3| unnamed protein product [Vitis vinifera]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/626 (66%), Positives = 494/626 (78%), Gaps = 52/626 (8%)

Query: 3   LLSPSSFFFLSLLLVLPLSLAS-SYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGA 61
           +L+ + FFF+  +L  PLS +   YP+  SY IDCG +T++ D FN TW +D R YT G+
Sbjct: 1   MLAFAVFFFILPILFSPLSSSEVQYPFNVSYNIDCGGSTNSVDQFNRTWLSD-RNYTGGS 59

Query: 62  TSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPS 121
           T +VSEPLHF    EKT+R+FP SSGKKNCYI+ NLP GRYY+RTFTVYDNYDGKSHSPS
Sbjct: 60  TGLVSEPLHFHPLQEKTIRFFPLSSGKKNCYIV-NLPNGRYYVRTFTVYDNYDGKSHSPS 118

Query: 122 FDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQ 181
           FD+SVEGTLVFSWRSPWPE +++ GAYSDLF +V DGE D+CFYS ATDPPVI SLE+ Q
Sbjct: 119 FDLSVEGTLVFSWRSPWPEEVSQHGAYSDLFVYVNDGEADVCFYSIATDPPVIGSLEIIQ 178

Query: 182 IDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSI 241
           ID  SYD+ATIG + ILVNYGRLT GS+QWGPGFSND D FGRSWQSD   R+ N  S+I
Sbjct: 179 IDAYSYDSATIGTDQILVNYGRLTCGSDQWGPGFSNDTDFFGRSWQSDEEFRAKN--SNI 236

Query: 242 KSVTTRERITNTNQPPNYYPMKLYQTAIV--SSGAIQYNLAVDAKLDYLIWFHFAEIDSS 299
           K + T + I NTN+ PNY+PM+LYQ+A+    +GA++Y L VDAKLDYL+WFHFAEID+S
Sbjct: 237 KRLLTSKSIANTNKLPNYFPMRLYQSAVTVTGNGALEYELQVDAKLDYLLWFHFAEIDAS 296

Query: 300 VTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALI 359
           V  AG+RVF++++N  NVTR+D++  VG FAA +WHYV KNLS+T LTVKLVPVVGA ++
Sbjct: 297 VNAAGKRVFEVVINGNNVTRIDVYQRVGGFAADNWHYVVKNLSNTLLTVKLVPVVGAPIL 356

Query: 360 SGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNK 419
           SGLENYAL+P DLSTVP+QVIAMRALKESLR+P RMGWNGDPCAPTNWDAWEG+TCHPNK
Sbjct: 357 SGLENYALIPADLSTVPDQVIAMRALKESLRIPARMGWNGDPCAPTNWDAWEGVTCHPNK 416

Query: 420 DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLS 479
            ETA+V+SQIDLGSQGLKG+ISD+I  LSNLV+LNLS+N L GTLPSGLGQ+SL RLDLS
Sbjct: 417 KETALVVSQIDLGSQGLKGFISDQIGHLSNLVSLNLSSNFLEGTLPSGLGQESLARLDLS 476

Query: 480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------- 528
           +NQ TGSIP+SL +SS LQLVLLN+NLLEG+VP++++S+GVHGG+ DLS           
Sbjct: 477 NNQLTGSIPESL-ASSNLQLVLLNDNLLEGKVPDKIFSVGVHGGSIDLSGNKGLCGVSPL 535

Query: 529 ---------------------------------VVYICCIRRGRNDYDFGLPQDLMSLSA 555
                                            V+YI CIRRG +DYDFGLPQDLMSL+A
Sbjct: 536 PSCPLFWDHGSLSTGGKIGIGIACSVIFCVLLLVIYIFCIRRGNDDYDFGLPQDLMSLAA 595

Query: 556 KRNRYQRQKSLMLLEMESQHAKGLPT 581
           KRN+YQRQKSLMLLEMESQHAKG P+
Sbjct: 596 KRNKYQRQKSLMLLEMESQHAKGFPS 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566849|ref|XP_002524408.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223536369|gb|EEF38019.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  814 bits (2103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/577 (69%), Positives = 460/577 (79%), Gaps = 50/577 (8%)

Query: 27  PYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSS 86
           PY  SY IDCG  T+TTDPFNTTW +D R++T G+TS+VSEPLHFRFP EK LRYFP SS
Sbjct: 19  PYDISYYIDCGGPTNTTDPFNTTWLSD-RFFTGGSTSVVSEPLHFRFPQEKNLRYFPLSS 77

Query: 87  GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
           GKKNCYI+P LP GRYYIRTFTVYDNYDGK HSPSFDVSVEGTLVFSWRSPW E LARDG
Sbjct: 78  GKKNCYILP-LPNGRYYIRTFTVYDNYDGKLHSPSFDVSVEGTLVFSWRSPWSENLARDG 136

Query: 147 AYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTS 206
           AYSDLF F+ DGE D+CFYS ATDPPVI SLE++Q+DP SYD+ T+GNN ILVNYGRL+ 
Sbjct: 137 AYSDLFTFIDDGEADICFYSIATDPPVIGSLEIRQVDPASYDSITVGNNSILVNYGRLSC 196

Query: 207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSI--KSVTTRERITNTNQPPNYYPMKL 264
           GS QWGPGFSND D+FGRSWQSD   R+P    ++  +S++TRE+I+ T+QPPNY+PMKL
Sbjct: 197 GSVQWGPGFSNDTDNFGRSWQSDLEFRTPTTTKTMAFRSLSTREKISGTDQPPNYFPMKL 256

Query: 265 YQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN 324
           YQTA+  +GA++Y L VDAKLDYL+WFHFAEIDS+VTK GQRVFD++VNDKN +RVDIF 
Sbjct: 257 YQTAVTGNGALEYELTVDAKLDYLLWFHFAEIDSTVTKKGQRVFDVVVNDKNASRVDIFA 316

Query: 325 SVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRA 384
           +VGSFAAYS+ Y  +NLS+  LTVK+VP +GA LISG+ENYALVPND+ST P+QV AMRA
Sbjct: 317 AVGSFAAYSFSYAVRNLSNGALTVKIVPHIGAPLISGIENYALVPNDISTAPDQVAAMRA 376

Query: 385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444
           LKESLRVPDRMGWNGDPCAPTNWDAWEG+TCHPNK+ TA+VISQIDLGSQGLKGYI+D+I
Sbjct: 377 LKESLRVPDRMGWNGDPCAPTNWDAWEGVTCHPNKNGTALVISQIDLGSQGLKGYINDQI 436

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           S LSNLV+LNLS+NSLGG LP GLG +SL+RLDLS+NQF+G IP+SL SSS LQLVLL+N
Sbjct: 437 SQLSNLVSLNLSSNSLGGMLPPGLGHKSLMRLDLSNNQFSGPIPESLASSS-LQLVLLHN 495

Query: 505 NLLEGRVPEELYSIGVHGGAFDLS------------------------------------ 528
           NLLEGRV EELYSIG+HGG  DLS                                    
Sbjct: 496 NLLEGRVQEELYSIGLHGGTIDLSGNKGLCGVPSLPQCSLFWENGHLSTGGKVGIALSSI 555

Query: 529 --------VVYICCIRRGRNDYDFGLPQDLMSLSAKR 557
                   VVYI  I+R RNDYDF  P DLMS   +R
Sbjct: 556 LVISVLLIVVYI-YIKRSRNDYDFAPPHDLMSKLVRR 591

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526481|ref|XP_004170242.1| PREDICTED: receptor-like protein kinase At3g21340-like, partial [Cucumis sativus]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/582 (65%), Positives = 444/582 (76%), Gaps = 48/582 (8%)

Query: 16  LVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPH 75
           ++ P S+++ YP+  SY IDCG   ++TDPF TTW +D R+YT G T+IVSEPL FR P 
Sbjct: 12  VITPSSISAPYPFSISYHIDCGGLINSTDPFGTTWLSD-RFYTGGTTAIVSEPLIFRHPQ 70

Query: 76  EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWR 135
           EK LR+FP SSGKKNCYIIPNLP GRYY RTFTVYDNYDGKSH PSFD S+EGTLVFSWR
Sbjct: 71  EKNLRFFPLSSGKKNCYIIPNLPTGRYYFRTFTVYDNYDGKSHPPSFDASIEGTLVFSWR 130

Query: 136 SPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNN 195
           SPW E LAR GAYSDLFAF+ DGE D CFYS +TD PVI S ++ Q+DP+SY++  IG N
Sbjct: 131 SPWSEDLARHGAYSDLFAFIGDGEADFCFYSLSTDSPVIGSFQLVQVDPMSYNSTAIGEN 190

Query: 196 HILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQ 255
            ILVNYGRLT GS QWGPGFSND D FGRSWQSD+    P+ K S++ ++T + ++  +Q
Sbjct: 191 FILVNYGRLTCGSEQWGPGFSNDTDVFGRSWQSDSIFIIPSLKQSVRVLSTAKSVSGADQ 250

Query: 256 PPNYYPMKLYQTAIV--SSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN 313
            PNY+PMKLYQ A+    +G ++Y L VDAKLDYL+W HFAEIDSSV KAGQRVFD+++N
Sbjct: 251 QPNYFPMKLYQKAVTVGGTGVLEYELPVDAKLDYLVWLHFAEIDSSVKKAGQRVFDVVIN 310

Query: 314 DKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS 373
             N TR+DIF  VGSFAAYSW Y  KNLSS+ L+VKLV VVG+ L+SGLENYALVP DLS
Sbjct: 311 GNNATRIDIFAKVGSFAAYSWSYTMKNLSSSALSVKLVGVVGSPLLSGLENYALVPRDLS 370

Query: 374 TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGS 433
           T PEQV AMRALKESLRVP RMGWNGDPCAPTNWDAWEGITC PNK+ TA+VI QIDLGS
Sbjct: 371 TAPEQVSAMRALKESLRVPGRMGWNGDPCAPTNWDAWEGITCRPNKNATALVIFQIDLGS 430

Query: 434 QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTS 493
           QGLKGYISD+I LL+NLV+LNLS+NSLGGT+P GLG+ SL RLDLS NQ TGSIPDSL +
Sbjct: 431 QGLKGYISDQIVLLTNLVSLNLSSNSLGGTIPPGLGEHSLTRLDLSKNQLTGSIPDSL-A 489

Query: 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS------------------------- 528
           S  LQLV+LN+NLLEGRVPEELYSIGVHGGA DLS                         
Sbjct: 490 SRNLQLVILNDNLLEGRVPEELYSIGVHGGAIDLSSNKGLCGVPSLPTCPLFWEHGRLSK 549

Query: 529 -------------------VVYICCIRRGRNDYDFGLPQDLM 551
                              ++YICCIRR RNDYDFGLP +L+
Sbjct: 550 TGKIAIALSSTFLFCALLAIIYICCIRRSRNDYDFGLPSELL 591

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499717|ref|XP_003518683.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/599 (64%), Positives = 463/599 (77%), Gaps = 52/599 (8%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKN 90
           SY IDCGS T++TD FNTTW +D RY++ GAT IVSEPL FR  HEKTLR+FP SSGKKN
Sbjct: 37  SYHIDCGSPTNSTDQFNTTWLSD-RYFSGGATGIVSEPLRFRHGHEKTLRFFPISSGKKN 95

Query: 91  CYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSD 150
           CY IPNLPP RY +RTF VYDNYDG+SH PSFDV++  T+VFSWRSPWP+ LARDGAY+D
Sbjct: 96  CYTIPNLPPSRYLLRTFVVYDNYDGRSHPPSFDVAIAATVVFSWRSPWPQSLARDGAYAD 155

Query: 151 LFAFV-KDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIG-NNHILVNYGRLTSGS 208
           LFA +    E  +CFYSFATDPPV++S+E+   DP SYDAA IG N+ +LVNYGRL+ GS
Sbjct: 156 LFATITASSEALICFYSFATDPPVVSSIELFAADPASYDAAAIGKNDSVLVNYGRLSCGS 215

Query: 209 NQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTA 268
            QWGPGFSND+D FGRSWQSD+  R+   +S +++++TR RI+ T Q PNY+P KLYQTA
Sbjct: 216 KQWGPGFSNDSDRFGRSWQSDSDFRT--GRSKVRAMSTRSRISGTEQKPNYFPEKLYQTA 273

Query: 269 IVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNS 325
             +    G ++Y L+VDAKLDYL+W HFAEI+  V + G+RVFD+ +ND N+TRVDI+  
Sbjct: 274 ATAEEGGGVLEYELSVDAKLDYLVWLHFAEIEERVRRVGERVFDVYINDDNLTRVDIYKQ 333

Query: 326 VGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRAL 385
           VG FAA++WH+  KNLSS+ L+VKLV VVGA LI G+ENYALVP+D STVPEQV+AM+AL
Sbjct: 334 VGGFAAFTWHHTVKNLSSSVLSVKLVGVVGAPLICGIENYALVPSDPSTVPEQVVAMKAL 393

Query: 386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKIS 445
           K+SLRVP+RMGWNGDPCAPTNWDAWEG+TC  +K+ TA+VISQIDLGSQGLKG ISD+IS
Sbjct: 394 KDSLRVPERMGWNGDPCAPTNWDAWEGVTCRTSKNNTALVISQIDLGSQGLKGSISDQIS 453

Query: 446 LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           LLS+LV+LNLS+N L G +PSGLGQ+SL+ LDLS+NQ TG IPDS+ SSS LQLVLLN N
Sbjct: 454 LLSDLVSLNLSSNLLVGEIPSGLGQKSLIHLDLSNNQLTGPIPDSMASSS-LQLVLLNGN 512

Query: 506 LLEGRVPEELYSIGVHGGAFD----------------------------------LSVVY 531
           LLEGRVPE+LYSIGVHGGA D                                  LS ++
Sbjct: 513 LLEGRVPEQLYSIGVHGGAIDLSGNKGLCGVPSLPDCPMFWENGKLSTQGKIAIGLSCLF 572

Query: 532 ICC---------IRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT 581
           + C         IRR RNDYDF LP +L SL+ KRNRYQRQKSLM+LEMESQHAKGLP+
Sbjct: 573 VFCVILLLVYIYIRRRRNDYDFALPHELTSLATKRNRYQRQKSLMVLEMESQHAKGLPS 631

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498336|ref|XP_003518009.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/607 (63%), Positives = 465/607 (76%), Gaps = 55/607 (9%)

Query: 26  YPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPS 85
           +P   SY IDCGS T++TD FNTTW +D RY++ GAT IVSEPL FR  HEKTLR+FP S
Sbjct: 35  FPSGLSYHIDCGSPTNSTDQFNTTWLSD-RYFSGGATGIVSEPLRFRHGHEKTLRFFPIS 93

Query: 86  SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD 145
           SGKKNCY +PNLPP RY +RTF VYDNYDG+SH PSFDV+V  T+VFSWRSPWP+ LAR+
Sbjct: 94  SGKKNCYTVPNLPPSRYLLRTFVVYDNYDGRSHPPSFDVAVAATVVFSWRSPWPQSLARN 153

Query: 146 GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHI-LVNYGRL 204
           GAY+DLFA +   E  +CFYSFATDPPV++S+E+   DP SYDAA IG N I LVNYGRL
Sbjct: 154 GAYADLFATIASSEALICFYSFATDPPVVSSIELFAADPASYDAAAIGKNDIVLVNYGRL 213

Query: 205 TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKL 264
           + GSNQWGPGFSND+D FGRSWQSD+  R+   +S +++V+TR  I+ T Q PNY+P KL
Sbjct: 214 SCGSNQWGPGFSNDSDRFGRSWQSDSDFRT--GRSKVRAVSTRSGISGTEQKPNYFPEKL 271

Query: 265 YQTAIVSS-------GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317
           YQ+A +++       G ++Y L+VDAKLDYL+W HFAEI+  V + G+RVFD+ +N+ N+
Sbjct: 272 YQSAAMTAVTAEEGDGVLEYELSVDAKLDYLVWLHFAEIEGRVRRVGERVFDVYINNDNL 331

Query: 318 TRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE 377
           TR+DI+  VG FAA++WH+  KNLSS+ L+VKLV VVGA LI G+ENYALVP+D STVPE
Sbjct: 332 TRIDIYKQVGGFAAFTWHHTVKNLSSSVLSVKLVGVVGAPLICGIENYALVPSDPSTVPE 391

Query: 378 QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLK 437
           QV+AM+ALK+S RVP+RMGWNGDPCAPTNWDAWEG+TC  +K+ T +VISQIDLGSQGLK
Sbjct: 392 QVVAMKALKDSFRVPERMGWNGDPCAPTNWDAWEGVTCRTSKNSTTLVISQIDLGSQGLK 451

Query: 438 GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           G ISD+ISLLS+LV+LNLS+N L G +PSGLGQ+SL+ LDLS+NQ TG IPDS+ SSS L
Sbjct: 452 GSISDQISLLSDLVSLNLSSNLLVGEIPSGLGQKSLIHLDLSNNQLTGPIPDSIASSS-L 510

Query: 498 QLVLLNNNLLEGRVPEELYSIGVHGGAFD------------------------------- 526
           QLVLLN NLLEGRVPE+LYSIGVHGGA D                               
Sbjct: 511 QLVLLNGNLLEGRVPEQLYSIGVHGGAIDLSGNKGLCGVPSLPDCPMFWENGKLSTQGKI 570

Query: 527 ---LSVVYICC---------IRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQ 574
              LS +++ C         IRR RNDYDF LP +L SL+AKRNRYQRQKSLM+LEMESQ
Sbjct: 571 AIGLSCLFVFCVILLLVYIYIRRRRNDYDFALPHELTSLAAKRNRYQRQKSLMVLEMESQ 630

Query: 575 HAKGLPT 581
           HAKGLP+
Sbjct: 631 HAKGLPS 637

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562316|ref|NP_564237.2| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana] gi|332192522|gb|AEE30643.1| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana]

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/601 (65%), Positives = 469/601 (78%), Gaps = 49/601 (8%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKN 90
           S+ IDCGS  ++TD FN TW  D ++Y+ G+T++VSEPL F    EKT+RYFP S GKKN
Sbjct: 29  SFFIDCGSPETSTDVFNRTWLPD-QFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSFGKKN 87

Query: 91  CYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSD 150
           CY++P LPPGRYY+RTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPE L RDG+YSD
Sbjct: 88  CYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPESLLRDGSYSD 146

Query: 151 LFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQ 210
           LFAF+ DGELDLCFYS ATDPP++ SLEV Q+DP SYDA   G N +LVNYGRL+ GS+Q
Sbjct: 147 LFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSYDADGTGQNVLLVNYGRLSCGSDQ 206

Query: 211 WGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIV 270
           WGPGF+N  D+FGRSWQSD   RS +++S  +S++T E+I   +Q PNY+PMKLYQTA+ 
Sbjct: 207 WGPGFTNHTDNFGRSWQSDEDFRSEDSRSVARSLSTLEKIKGVDQAPNYFPMKLYQTAVT 266

Query: 271 SSG--AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGS 328
            SG  ++ Y L VDAKLDYL+WFHF+EIDS+V KAGQRVFD++VND NV+RVD+F+ VG 
Sbjct: 267 VSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVKKAGQRVFDLVVNDNNVSRVDVFHEVGG 326

Query: 329 FAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKES 388
           FAAYS +Y  KNLSST +TVKL  V GA +ISGLENYA+VP D++TVPEQV AM+ALK+S
Sbjct: 327 FAAYSLNYTVKNLSSTIVTVKLSSVSGAPIISGLENYAIVPADMATVPEQVTAMKALKDS 386

Query: 389 LRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLS 448
           LRVPDRMGWNGDPCAPT+WDAWEG++C PN   +A+VI QIDLGSQGLKG+IS++ISLL+
Sbjct: 387 LRVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGSALVIFQIDLGSQGLKGFISEQISLLT 446

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
           NL +LNLS+N+L G LP GLG +SLV LDLS+NQ TG IP+SLT SS L+LVLLN N L+
Sbjct: 447 NLNSLNLSSNTLSGQLPLGLGHKSLVSLDLSNNQLTGPIPESLTLSS-LKLVLLNGNELQ 505

Query: 509 GRVPEELYSIGVHGGAFDLS---------------------------------------- 528
           G+VPEE+YS+GVHGG  DLS                                        
Sbjct: 506 GKVPEEVYSVGVHGGIIDLSGNKGLCGVPSLPTCPLLWENGHLSKGGKIAIAISCVVFLI 565

Query: 529 ----VVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPL 584
               V+Y+CCI RGR+DYDF  P DL SL+AKRNRYQRQKSLMLLEMESQHAKG+PTLPL
Sbjct: 566 LVFLVIYLCCIWRGRHDYDFAPPHDLTSLAAKRNRYQRQKSLMLLEMESQHAKGMPTLPL 625

Query: 585 N 585
           N
Sbjct: 626 N 626

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488299|ref|XP_003614437.1| Receptor-like protein kinase [Medicago truncatula] gi|355515772|gb|AES97395.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/625 (62%), Positives = 470/625 (75%), Gaps = 57/625 (9%)

Query: 12  LSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHF 71
           L L   +  +++++ PY  SY IDCG+ T+TTD FNTTW +D R++T G T  VSEPL F
Sbjct: 5   LILFFSILTTVSTALPYGISYHIDCGTPTNTTDSFNTTWLSD-RFFTGGTTGFVSEPLQF 63

Query: 72  RFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV 131
              HEKTLR+FP SSGKKNCY IP+    RY IRTF VYDNYDGKSH PSFDVSV GT+V
Sbjct: 64  HHHHEKTLRFFPISSGKKNCYSIPSSTTSRYLIRTFVVYDNYDGKSHPPSFDVSVSGTVV 123

Query: 132 FSWRSPWPEGLARDGAYSDLFAFVKDGE-LDLCFYSFATDPPVIASLEVQQIDPLSYDAA 190
           FSWRSPWP+ LARDGAYSDLFA  K+ E + +CFYSFATDPPV++S+E+  +DP SYD+A
Sbjct: 124 FSWRSPWPQNLARDGAYSDLFASFKEQEDVLICFYSFATDPPVVSSIELFGVDPASYDSA 183

Query: 191 TIGNNH-ILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASR---SPNAKSSIKSVTT 246
           +IGNN  ILVNYGR++ GSNQWGPGF+ND D FGRSWQSD+  R   S + ++ + +V+T
Sbjct: 184 SIGNNDTILVNYGRVSCGSNQWGPGFTNDDDRFGRSWQSDSDYRISGSGSRRNKVVAVST 243

Query: 247 RERITNTNQPPNYYPMKLYQTAIVSSG-------AIQYNLAVDAKLDYLIWFHFAEIDSS 299
           R  I  TNQ PNY+P KLY+TA  ++         +++ L VDAKLDYL+W HFAEI+  
Sbjct: 244 RRNIAGTNQKPNYFPAKLYETAATTAETAEEGGGVLEFELNVDAKLDYLVWLHFAEIEDR 303

Query: 300 VTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALI 359
           V KAG+RVFD+ +N  N+TRVDI+  VG  AA++WH+  KNLSS+ L VKLV VVGA +I
Sbjct: 304 VRKAGERVFDVFINGDNLTRVDIYKQVGGLAAFTWHHTVKNLSSSSLIVKLVGVVGAPII 363

Query: 360 SGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNK 419
            G+ENYALVP D STVP+QVIAM+ALK+SLRVP+RMGWNGDPCAPTNWDAWEG+TC  +K
Sbjct: 364 CGIENYALVPGDPSTVPQQVIAMKALKDSLRVPERMGWNGDPCAPTNWDAWEGVTCRMSK 423

Query: 420 DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLS 479
           D TA+VISQIDLGSQGLKG+ISD+ISLLS+LV+LNLS+N L G +P GLGQ+SL+ LDLS
Sbjct: 424 DNTALVISQIDLGSQGLKGFISDQISLLSDLVSLNLSSNLLVGEVPPGLGQKSLIHLDLS 483

Query: 480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL------------ 527
           +NQ TGSIPDS+TSSS LQLVLLN NLLEG+VP+ELYSIGVHGGA DL            
Sbjct: 484 NNQLTGSIPDSITSSS-LQLVLLNGNLLEGQVPDELYSIGVHGGAIDLSGNKGLCGVPSL 542

Query: 528 ----------------------SVVYICC---------IRRGRNDYDFGLPQDLMSLSAK 556
                                 S +++ C         IRR RNDYDF LP +L +L+AK
Sbjct: 543 PACPMFWKNGKLSTEGKIAIGVSSLFVFCLIVLLVYIYIRRRRNDYDFALPHELTALAAK 602

Query: 557 RNRYQRQKSLMLLEMESQHAKGLPT 581
           RNRYQRQKSLM+LEMESQHAKGLP+
Sbjct: 603 RNRYQRQKSLMVLEMESQHAKGLPS 627

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574639|ref|XP_003555453.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g16900-like [Glycine max]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/629 (58%), Positives = 464/629 (73%), Gaps = 55/629 (8%)

Query: 8   SFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSE 67
           ++ FL  L+ + ++ ++      SY I+CG++T +TD FNTTW +D R++++G++++VSE
Sbjct: 4   AYSFLVSLVFITMTPSTPQVEAFSYHINCGASTDSTDSFNTTWLSD-RFFSAGSSALVSE 62

Query: 68  PLHFRFPHEKTLRYFPPSS-GKKNCYIIPNLP-PGRYYIRTFTVYDNYDGKSHSPSFDVS 125
           PLHF  P EKTLR+FPPSS GK+NCY  P+LP P RY +RTFTVYDNYD KS  PSFDVS
Sbjct: 63  PLHFPLPSEKTLRFFPPSSSGKRNCYTFPSLPSPSRYLLRTFTVYDNYDAKSRPPSFDVS 122

Query: 126 VEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATDPPVIASLEVQQIDP 184
           +  T++FSWRSPWPE  AR+GAYSDLFA + +   LDLCFY FATD P+++S+E+ Q+ P
Sbjct: 123 LSSTVLFSWRSPWPESTARNGAYSDLFASLPNTSSLDLCFYGFATDSPLVSSIELVQVHP 182

Query: 185 LSYDAATIGNNHILVNYGRLTSGS--NQWGPGFSNDADDFGRSWQSDAASRS-PNAKSSI 241
            +Y   T  NN ILVNYGR++ G+    WG GF+N  D F RSWQ D   R+ P  +  +
Sbjct: 183 AAY---TNSNNLILVNYGRISCGAAAKPWGAGFTNHTDRFSRSWQPDYDFRTIPEDRDEV 239

Query: 242 KSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVT 301
           +S++T   I+  ++ PNY+PMKLYQ+A+ + G + Y L+VDAKLDY +W HFAEIDSSV 
Sbjct: 240 RSLSTDNSISGADEAPNYFPMKLYQSAVTTEGPLGYELSVDAKLDYTVWLHFAEIDSSVN 299

Query: 302 KAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISG 361
           KAG+RVFDI +ND NVTR+DI+N VG+FAA + ++  KNLS   LT+KLVP VGA LI  
Sbjct: 300 KAGERVFDIFINDDNVTRLDIYNHVGAFAALTLNFTVKNLSDNVLTLKLVPAVGAPLICA 359

Query: 362 LENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDE 421
           +ENYALVP D ST+P QV AM+ALKESLRVPDRMGWNGDPCAPTNWDAWEG+TC    D+
Sbjct: 360 IENYALVPVDPSTLPLQVSAMKALKESLRVPDRMGWNGDPCAPTNWDAWEGVTCRMTNDK 419

Query: 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDN 481
           TA VISQIDLGSQGLKG+ISD+ISLLS+LV+LNLS+NSLGG +P GLGQ+SL+++DLS+N
Sbjct: 420 TAHVISQIDLGSQGLKGFISDQISLLSDLVSLNLSSNSLGGEIPPGLGQKSLIQVDLSNN 479

Query: 482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD--------------- 526
           Q  G IPDSL +SS L+LVLLN NLLEGRVPE+LYS+GVHGGA D               
Sbjct: 480 QLMGFIPDSL-ASSNLKLVLLNGNLLEGRVPEQLYSVGVHGGAIDLSGNKGLCGVPSLPS 538

Query: 527 -------------------LSVVYICC---------IRRGRNDYDFGLPQDLMSLSAKRN 558
                              LS +++ C         IRR RNDYDF LP +LMSL+AKRN
Sbjct: 539 CPMFWEHGRLSTRGKIAIALSCLFVFCVVLLVAYIYIRRKRNDYDFALPHELMSLAAKRN 598

Query: 559 RYQRQKSLMLLEMESQHAKGLPTLPLNPR 587
           RYQRQKSLMLLE+ESQHAKGLP+ P  P+
Sbjct: 599 RYQRQKSLMLLELESQHAKGLPS-PFTPQ 626

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12320747|gb|AAG50525.1|AC084221_7 hypothetical protein [Arabidopsis thaliana]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/548 (61%), Positives = 413/548 (75%), Gaps = 45/548 (8%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKN 90
           S+ IDCGS  ++TD FN TW  D ++Y+ G+T++VSEPL F    EKT+RYFP S GKKN
Sbjct: 29  SFFIDCGSPETSTDVFNRTWLPD-QFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSFGKKN 87

Query: 91  CYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSD 150
           CY++P LPPGRYY+RTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPE L RDG+YSD
Sbjct: 88  CYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPESLLRDGSYSD 146

Query: 151 LFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQ 210
           LFAF+ DGELDLCFYS ATDPP++ SLEV Q+DP SYDA   G N +LVNYGRL+ GS+Q
Sbjct: 147 LFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSYDADGTGQNVLLVNYGRLSCGSDQ 206

Query: 211 WGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIV 270
           WGPGF+N  D+FGRSWQSD   RS +++S  +S++T E+I   +Q PNY+PMKLYQTA+ 
Sbjct: 207 WGPGFTNHTDNFGRSWQSDEDFRSEDSRSVARSLSTLEKIKGVDQAPNYFPMKLYQTAVT 266

Query: 271 SSG--AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGS 328
            SG  ++ Y L VDAKLDYL+WFHF+EIDS+V KAGQRVFD++VND NV+RVD+F+ VG 
Sbjct: 267 VSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVKKAGQRVFDLVVNDNNVSRVDVFHEVGG 326

Query: 329 FAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKES 388
           FAAYS +Y  KNLSST +TVKL  V GA +ISGLENYA+VP D++TVPEQV AM+ALK+S
Sbjct: 327 FAAYSLNYTVKNLSSTIVTVKLSSVSGAPIISGLENYAIVPADMATVPEQVTAMKALKDS 386

Query: 389 LRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLS 448
           LRVPDRMGWNGDPCAPT+WDAWEG++C PN   +A+VI QIDLGSQGLKG+IS++ISLL+
Sbjct: 387 LRVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGSALVIFQIDLGSQGLKGFISEQISLLT 446

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
           NL +LNLS+N+L G LP GLG +SLV L                        LLN N L+
Sbjct: 447 NLNSLNLSSNTLSGQLPLGLGHKSLVSL------------------------LLNGNELQ 482

Query: 509 GRVPEELYSIGVHGGAFDLSVVYICC-----------------IRRGRNDYDFGLPQDLM 551
           G+VPEE+YS+GVHGG  DLS     C                  + GR+DYDF  P DL 
Sbjct: 483 GKVPEEVYSVGVHGGIIDLSGNKGLCGVPSLPTCPLLWENGHLSKGGRHDYDFAPPHDLT 542

Query: 552 SLSAKRNR 559
             ++ + +
Sbjct: 543 CDASSKEK 550

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
TAIR|locus:2031175	628	AT1G25570 [Arabidopsis thalian	0.850	0.794	0.646	4.8e-205
TAIR|locus:2032221	626	RLP4 "receptor like protein 4"	0.834	0.782	0.331	6.7e-65
TAIR|locus:2094103	519	AT3G19230 [Arabidopsis thalian	0.787	0.890	0.274	1.9e-35
TAIR|locus:2195855	876	AT1G51910 [Arabidopsis thalian	0.732	0.490	0.268	1.5e-25
TAIR|locus:2055160	886	AT2G14440 [Arabidopsis thalian	0.766	0.507	0.251	7.4e-25
TAIR|locus:2078171	883	AT3G46400 [Arabidopsis thalian	0.747	0.497	0.253	1.2e-24
TAIR|locus:2028446	888	AT1G49100 [Arabidopsis thalian	0.749	0.495	0.257	1.3e-24
TAIR|locus:2078186	889	AT3G46340 [Arabidopsis thalian	0.752	0.497	0.243	2.8e-24
TAIR|locus:2024987	864	AT1G07550 [Arabidopsis thalian	0.735	0.5	0.260	7.3e-24
TAIR|locus:2126540	876	AT4G29990 [Arabidopsis thalian	0.735	0.493	0.264	7.4e-24

TAIR|locus:2031175 AT1G25570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1752 (621.8 bits), Expect = 4.8e-205, Sum P(2) = 4.8e-205
 Identities = 326/504 (64%), Positives = 393/504 (77%)

Query:    27 PYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSS 86
             P+  S+ IDCGS  ++TD FN TW   D++Y+ G+T++VSEPL F    EKT+RYFP S 
Sbjct:    25 PFNTSFFIDCGSPETSTDVFNRTW-LPDQFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSF 83

Query:    87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
             GKKNCY++P LPPGRYY+RTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPE L RDG
Sbjct:    84 GKKNCYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPESLLRDG 142

Query:   147 AYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTS 206
             +YSDLFAF+ DGELDLCFYS ATDPP++ SLEV Q+DP SYDA   G N +LVNYGRL+ 
Sbjct:   143 SYSDLFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSYDADGTGQNVLLVNYGRLSC 202

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
             GS+QWGPGF+N  D+FGRSWQSD   RS +++S  +S++T E+I   +Q PNY+PMKLYQ
Sbjct:   203 GSDQWGPGFTNHTDNFGRSWQSDEDFRSEDSRSVARSLSTLEKIKGVDQAPNYFPMKLYQ 262

Query:   267 TAIVSSG--AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN 324
             TA+  SG  ++ Y L VDAKLDYL+WFHF+EIDS+V KAGQRVFD++VND NV+RVD+F+
Sbjct:   263 TAVTVSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVKKAGQRVFDLVVNDNNVSRVDVFH 322

Query:   325 SVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRA 384
              VG FAAYS +Y  KNLSST +TVKL  V GA +ISGLENYA+VP D++TVPEQV AM+A
Sbjct:   323 EVGGFAAYSLNYTVKNLSSTIVTVKLSSVSGAPIISGLENYAIVPADMATVPEQVTAMKA 382

Query:   385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444
             LK+SLRVPDRMGWNGDPCAPT+WDAWEG++C PN   +A+VI QIDLGSQGLKG+IS++I
Sbjct:   383 LKDSLRVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGSALVIFQIDLGSQGLKGFISEQI 442

Query:   445 XXXXXXXXXXXXXXXXXXXXPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKXXXXXXXX 504
                                 P GLG +SLV LDLS+NQ TG IP+SLT SS         
Sbjct:   443 SLLTNLNSLNLSSNTLSGQLPLGLGHKSLVSLDLSNNQLTGPIPESLTLSS-LKLVLLNG 501

Query:   505 XXXEGRVPEELYSIGVHGGAFDLS 528
                +G+VPEE+YS+GVHGG  DLS
Sbjct:   502 NELQGKVPEEVYSVGVHGGIIDLS 525

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2032221 RLP4 "receptor like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 170/513 (33%), Positives = 253/513 (49%)

Query:    27 PYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPS 85
             PY  + RI CG+  +  T P    W  D  Y T G  +  + P +   P  KTLRYFP S
Sbjct:    26 PY--ALRISCGARKNVRTPPTYALWFKDIAY-TGGVPANATTPTYIT-PPLKTLRYFPIS 81

Query:    86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD 145
              G  NCY I  +P G Y +R F    +       P FD+S+EGT + S +S W      D
Sbjct:    82 EGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDISIEGTQISSLKSGWSS--QDD 139

Query:   146 GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAAT-IGNNHILVNYGRL 204
               +++   F+  G   +CF+S     P I S+E+ Q+D  +Y      G   IL    RL
Sbjct:   140 QVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAYSFGEGWGQGVILRTATRL 199

Query:   205 TSGSNQWGPGFSNDADDFGRSWQSDAA-SRSPN-AKSSIKSVTTRERITNTNQPPNYYPM 262
             T G+ +    F  D D  G  W  D   +R  +  KS+    +T E I   +  PN+YP 
Sbjct:   200 TCGTGK--SRF--DEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEETIKKASVSPNFYPE 255

Query:   263 KLYQTAIVSSGA---IQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DKNVT 318
              LYQ+A+VS+     + Y+L V+   +Y +W HFAEID+++T  G+RVFD+++N D    
Sbjct:   256 GLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGKRVFDVVINGDTFFE 315

Query:   319 RVDIFN-SVGSFAAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVP 376
              VDI   S G +AA   +     +S   LTV L P  G  A+I+ +E + ++  +  T+ 
Sbjct:   316 DVDIIKMSGGRYAALVLNATV-TVSGRTLTVVLQPKAGGHAIINAIEVFEIITAEFKTLR 374

Query:   377 EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGL 436
             ++V A++ +K++L +P R GWNGDPC P     W G  C  +K+ +   I  +DL +QGL
Sbjct:   375 DEVSALQKMKKALGLPSRFGWNGDPCVPPQ-HPWSGANCQLDKNTSRWFIDGLDLDNQGL 433

Query:   437 KGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS 495
             KG++ + I                    P+ LG   SL  LDLS N F GSIP++L   +
Sbjct:   434 KGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSFNGSIPETLGELT 493

Query:   496 KXXXXXXXXXXXEGRVPEELYSIGVHGGAFDLS 528
                          G+VP  +    +H  +F+ +
Sbjct:   494 SLRILNLNGNSLSGKVPAAVGGRLLHRASFNFT 526

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2094103 AT3G19230 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 137/500 (27%), Positives = 218/500 (43%)

Query:    27 PYKASYRIDCGSATSTTDPFNTT-WQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPS 85
             P    + ++CGS++ST    N   +  D+ + + G T+ + +      P   TLRYFP  
Sbjct:    18 PPPRGFFLNCGSSSSTN--LNEIEYTPDEGFISVGNTTTIKQK--DLVPILSTLRYFPDK 73

Query:    86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTL--VFSWRSPWPEGLA 143
             S +K+CY  P     +Y IRT   Y N+DGK++ P FD  + GT   V +    + +G  
Sbjct:    74 SSRKHCYNFPVAKTSKYLIRTTYYYGNFDGKNNPPVFDQIIGGTKWSVVNTSEDYAKG-- 131

Query:   144 RDGAYSDLFAFVKDGELDLCFYSFA---TDPPVIASLEVQQIDPLSYDAATIGNNHILVN 200
                +Y ++   V    L +C    A   +  P I+SL+VQ ++   Y++  +G+  + + 
Sbjct:   132 -QSSYYEIIVGVPGNRLSVCLAKNAHTLSSSPFISSLDVQSLEDTMYNSTDLGSYKLSL- 189

Query:   201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYY 260
               R + G +  G   S   D + R WQ       P +     +VT+R RI  +N   N  
Sbjct:   190 IARNSFGGD--GEIISYPDDKYNRLWQ-------PFSDQKHLTVTSRSRINPSNFW-NIP 239

Query:   261 PMKLYQTAIVSSGA----IQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN 316
             P + +     +S      +Q+         Y +  +F + + S      R FD+ VN  +
Sbjct:   240 PAEAFVEGFTASKGKPLELQWPPFPLPATKYYVALYFQD-NRSPGPMSWRAFDVSVNGLS 298

Query:   317 VTRVDIFNSVGSFAAYSWHYVAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTV 375
               R  +  S      YS  +     +   LT  K  PV G  + +G E + ++P   +T 
Sbjct:   299 FLR-KLNVSTNGVMVYSGQWPLSGQTQITLTPAKDAPV-GPFINAG-EVFQILPLGGTTN 355

Query:   376 PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQG 435
              +  IAM  L ES+  P  + W+GDPC P   ++W G+TC  +KD+ A VIS ++L + G
Sbjct:   356 IKDAIAMEDLLESIMKPP-VDWSGDPCLPRA-NSWTGLTC--SKDKIARVIS-LNLTNLG 410

Query:   436 LKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSS 495
             L G +   I                    P       L  L L DNQFTG+IP+SL    
Sbjct:   411 LSGSLPPSINKMTALKDLWLGKNKLTGPIPDLSPMTRLETLHLEDNQFTGAIPESLAKLP 470

Query:   496 KXXXXXXXXXXXEGRVPEEL 515
                         +G +P  L
Sbjct:   471 SLRTLSIKNNKLKGTIPSVL 490

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2195855 AT1G51910 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 128/477 (26%), Positives = 209/477 (43%)

Query:    34 IDCG----SATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEK-TLRYFPPSSGK 88
             +DCG      T T    N T+ +D  Y  SG T  +S+    +   +  TLR FP   G+
Sbjct:    32 LDCGLIPKDTTYTEQITNITYISDADYIDSGLTERISDSYKSQLQQQTWTLRSFP--EGQ 89

Query:    89 KNCYIIPNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
             +NCY   NL    +Y IR   VY NYDG +  P FD+ +       W S   EG+A    
Sbjct:    90 RNCYNF-NLKANLKYLIRGTFVYGNYDGLNQMPKFDLHIGPN---KWTSVILEGVANATI 145

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDA-ATIGNNHILVNYGRLTS 206
             +  +    +D  L +C        P I+SLE++   PL+ D   T G +  L+++ R+  
Sbjct:   146 FEIIHVLTQD-RLQVCLVKTGQTTPFISSLELR---PLNNDTYVTQGGS--LMSFARIYF 199

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
                 +   +S+D  D  R W   + + + +  +++   T+     + N P N     +  
Sbjct:   200 PKTAYFLRYSDDLYD--RVWVPFSQNETVSLSTNLPVDTSSN---SYNVPQNVANSAIIP 254

Query:   267 TAIVSSGAIQYNLA-VDAKLDYLIWFHFAEIDSSVTKAGQ-RVFDILVNDKNVTRVDI-- 322
                     I ++L  ++A   Y ++ HFAEI +   KA   R F+I  N   V    I  
Sbjct:   255 AEATHPLNIWWDLQNINAP-SY-VYMHFAEIQN--LKANDIREFNITYNGGQVWESSIRP 310

Query:   323 ----FNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDL-STVPE 377
                   ++ S  A +      N + T  T   +P     LI+ LE Y LV N L  T  +
Sbjct:   311 HNLSITTISSPTALNSSDGFFNFTFTMTTTSTLP----PLINALEVYTLVENLLLETYQD 366

Query:   378 QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC-HPNKDETAVVISQIDLGSQGL 436
             +V AM  +K++  +  ++ W GDPC+P  +  WEG+ C + + D+   +I+ ++L + GL
Sbjct:   367 EVSAMMNIKKTYGLSKKISWQGDPCSPQIY-RWEGLNCLYLDSDQP--LITSLNLRTSGL 423

Query:   437 KGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQSLVRL-DLSDN-QFTGSIPDSL 491
              G I+  I                    P  L    ++ L +L  N +   ++PDS+
Sbjct:   424 TGIITHDISNLIQLRELDLSDNDLSGEIPDFLADMKMLTLVNLKGNPKLNLTVPDSI 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2055160 AT2G14440 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 7.4e-25, P = 7.4e-25
 Identities = 126/501 (25%), Positives = 213/501 (42%)

Query:    36 CGSATSTT---DPF-NTTWQADDRYYTSGATSIV--SEPLHFRFPHEKTLRYFPPSSGKK 89
             CG  ++ +   +P  N T+ +D  +   G T  +  +  + F     K LRYFP   G +
Sbjct:    34 CGLPSNESPYIEPLTNLTYISDVNFVRGGKTGNIKNNSDIDFTSRPYKVLRYFP--EGIR 91

Query:    90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAY 148
             NCY +      +Y IRT   Y NYDG + SP FD+ +   +   W S   + +   DG  
Sbjct:    92 NCYSLSVKQGTKYLIRTLFFYGNYDGLNTSPRFDLFLGPNI---WTSVDVQKVDGGDGVI 148

Query:   149 SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATI--GNNHILVNYGRLTS 206
              ++    +   LD+C     T  P+I+++E++   PL YD  T   G+   ++++    S
Sbjct:   149 EEIIHVTRCNILDICLVKTGTTTPMISAIELR---PLRYDTYTARTGSLKKILHFYFTNS 205

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
             G     P      D + R W        P+++     + T   ++  +   N  P  + +
Sbjct:   206 GKEVRYP-----EDVYDRVW-------IPHSQPEWTQINTTRNVSGFSDGYNP-PQDVIK 252

Query:   267 TAIVSSGA---IQYNLAVDAKLDYLI-WFHFAEIDSSVTKAGQ-RVFDILVN-----DKN 316
             TA + +     + +    ++  D    + +FAEI     KA + R F ILVN     D  
Sbjct:   253 TASIPTNVSEPLTFTWMSESSDDETYAYLYFAEIQQ--LKANETRQFKILVNGVYYIDYI 310

Query:   317 VTRVDIFNSVGSFAAYSWHYVAK-NLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV 375
               + +    +   A      V +  LS T  +  L P + A  I  +  +    +D +T 
Sbjct:   311 PRKFEAETLITPAALKCGGGVCRVQLSKTPKST-LPPQMNAIEIFSVIQFP--QSDTNT- 366

Query:   376 PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQG 435
              ++VIA++ ++ + +V  R+ W GDPC P  + +W G++C+     T   I  +DL S G
Sbjct:   367 -DEVIAIKNIQSTYKV-SRISWQGDPCVPIQF-SWMGVSCNVIDISTPPRIISLDLSSSG 423

Query:   436 LKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQSLVR-LDLSDNQFTGSIPDSLTSS 494
             L G I+  I                    P  L   +++R LDLS+N  TG +P+ L + 
Sbjct:   424 LTGVITPSIQNLTMLRELDLSNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATI 483

Query:   495 SKXXXXXXXXXXXEGRVPEEL 515
                           G VP+ L
Sbjct:   484 KPLLVIHLRGNNLRGSVPQAL 504

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2078171 AT3G46400 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 121/478 (25%), Positives = 206/478 (43%)

Query:    34 IDCGSATSTTDPF---NTTWQ--ADDRYYTSGATSIVSEPLHFRFPHEKT-LRYFPPSSG 87
             +DCG + +   P+    T  Q  +D  +  SG    +   L  ++P  +T LRYFP   G
Sbjct:    31 LDCGLSPNEQSPYVELETGLQFLSDSSFIQSGKIGRIDASLESKYPRSQTTLRYFP--DG 88

Query:    88 KKNCYIIPNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
              +NCY + N+  G  Y IR    Y NYDG + SP FD+ +       W +   E      
Sbjct:    89 IRNCYNV-NVYKGTNYLIRATINYGNYDGLNISPRFDLYIGPNF---WVTIDLEKHVGGD 144

Query:   147 AYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTS 206
              + ++    K   LD+C     T  P+I+ LE++ +   +Y   +     IL +Y  +++
Sbjct:   145 TWEEIIHIPKSNSLDVCLIKTGTSTPIISVLELRSLPNNTYITESGSLKSILRSYLSVST 204

Query:   207 GSNQWGPGFSNDADDF-GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLY 265
                ++ P      DDF  R W        P  +S  + ++T  ++ NT          L 
Sbjct:   205 KVIRY-P------DDFYDRKWV-------PYFESEWRQISTILKVNNTINGFLAPQEVLM 250

Query:   266 QTAIVSSGAIQYNLAVDAKL--DYL-IWFHFAEIDSSVTKAGQ-RVFDILVNDKNVTRVD 321
               A+ S+ ++  +   D +   D L  +FHF+EI     +A Q R F IL N + +    
Sbjct:   251 TAAVPSNASVPLSFTKDLEFPKDKLYFYFHFSEIQP--LQANQSREFSILWNGEIIIPTL 308

Query:   322 IFNSVGSFAAYSWHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLS-TVPEQV 379
                 + +   YS       +    L +K         L++ +E + ++    S T  + V
Sbjct:   309 SPKYLKASTLYSVSPFVCEVGKCLLELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDV 368

Query:   380 IAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY 439
              A++ +K++  +  R+ W GDPC P  +  WEG++C+      +  I+ ++L S GL G 
Sbjct:   369 SAIKNIKDTHGL-SRVSWQGDPCVPRQF-LWEGLSCNDKNVSASPRITSLNLSSSGLVGT 426

Query:   440 ISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
             I   I                    P  L + ++L+ +DL  N+  GSIP++L    K
Sbjct:   427 IPSGIQNFTLLEKLDLSNNNLTGLVPEFLAKMETLLFIDLRKNKLNGSIPNTLRDREK 484

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2028446 AT1G49100 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 123/477 (25%), Positives = 205/477 (42%)

Query:    34 IDCG---SATSTTDPFN-TTWQADDRYYTSGATSIVSEPLHFRFPHE-KTLRYFPPSSGK 88
             +DCG     +  T+P    T+ +D  +  SG    VS+     F     TLRYFP   G+
Sbjct:    33 LDCGLLPDGSPYTNPSTGLTFTSDSSFIESGKNGRVSKDSERNFEKAFVTLRYFP--DGE 90

Query:    89 KNCYIIPNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
             +NCY + N+  G  Y IR   +Y NYDG +  P+FD+ +    V +       G    G 
Sbjct:    91 RNCYNL-NVTQGTNYLIRAAFLYGNYDGLNTVPNFDLFIGPNKVTTVNFNATGG----GV 145

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSG 207
             + ++    +   LD+C     T  P+I++LE++ +   +Y +A IG++ +L   G L   
Sbjct:   146 FVEIIHMSRSTPLDICLVKTGTTTPMISTLELRPLRSDTYISA-IGSSLLLYFRGYLNDS 204

Query:   208 SNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTN--QPPNYYPMKLY 265
                    + +D +D  R W        P +    K VTT   +  +N    P    M   
Sbjct:   205 GVVLR--YPDDVND--RRW-------FPFSYKEWKIVTTTLNVNTSNGFDLPQG-AMASA 252

Query:   266 QTAIVSSGAIQYNLAV-DAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV--TRVDI 322
              T +  +G  ++  ++ D+   + I+ HFAE+ + +     R F++L+N K         
Sbjct:   253 ATRVNDNGTWEFPWSLEDSTTRFHIYLHFAELQTLLANE-TREFNVLLNGKVYYGPYSPK 311

Query:   323 FNSVGSFAAY-SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQVI 380
               S+ + +         K  S     VK        LI+ +E + +V    S T  ++VI
Sbjct:   312 MLSIDTMSPQPDSTLTCKGGSCLLQLVKTTKSTLPPLINAIELFTVVEFPQSETNQDEVI 371

Query:   381 AMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYI 440
             A++ ++ +  +  R+ W GDPC P  +  W G+ C      T   I+ ++L S GL G I
Sbjct:   372 AIKKIQLTYGL-SRINWQGDPCVPEQF-LWAGLKCSNINSSTPPTITFLNLSSSGLTGII 429

Query:   441 SDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
             S  I                    P  L   +SL+ ++LS N F+G +P  L    +
Sbjct:   430 SPSIQNLTHLQELDLSNNDLTGDVPEFLADIKSLLIINLSGNNFSGQLPQKLIDKKR 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2078186 AT3G46340 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
 Identities = 115/473 (24%), Positives = 186/473 (39%)

Query:    34 IDCGSATSTTDPF-----NTTWQADDRYYTSGATSIVSEPLHFR-FPHEKTLRYFPPSSG 87
             +DCG   +   P+        + +D  +  SG    V +           TLRYFP   G
Sbjct:    35 LDCGLPPNEVSPYIEPFTGLRFSSDSSFIQSGKIGKVDKSFEATTLKSYMTLRYFP--DG 92

Query:    88 KKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
             K+NCY +       Y IR   +Y NYDG + SP FD+ +       W +    G    G 
Sbjct:    93 KRNCYNLIVKQGKTYMIRATALYGNYDGLNISPKFDLYIGANF---WTT-LDAGEYLSGV 148

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSG 207
               ++    +   LD+C     T  P ++ LE++   PL  D+   G+   L  + R    
Sbjct:   149 VEEVNYIPRSNSLDVCLVKTDTSTPFLSLLELR---PLDNDSYLTGSGS-LKTFRRYYLS 204

Query:   208 SNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQT 267
             +++    +  D  D  R W+    S      +++K   +   +     P N   +     
Sbjct:   205 NSESVIAYPEDVKD--RIWEPTFDSEWKQIWTTLKPNNSNGYLV----PKNV--LMTAAI 256

Query:   268 AIVSSGAIQYNLAVDAKLDYL-IWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSV 326
                 S   ++   +D+  D L ++ HF+E+ S       R FDIL + +      I   +
Sbjct:   257 PANDSAPFRFTEELDSPTDELYVYLHFSEVQSLQANES-REFDILWSGEVAYEAFIPEYL 315

Query:   327 GSFAAYSWHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVP-NDLSTVPEQVIAMRA 384
                   +   V        L +K         LI+ +E Y +V    L T    V+A++ 
Sbjct:   316 NITTIQTNTPVTCPGGKCNLELKRTKNSTHPPLINAIEFYTVVNFPQLETNETDVVAIKD 375

Query:   385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444
             +K +  + +R+ W GDPC P  +  WEG+ C+     T   I+ ++L S GL G I+  I
Sbjct:   376 IKATYEL-NRITWQGDPCVPQKF-IWEGLDCNSKDALTLPRITSLNLSSTGLTGNIAAGI 433

Query:   445 XXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
                                 P  L   +SL  ++LS N   GSIP +L    K
Sbjct:   434 QNLTHLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQALLKREK 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2024987 AT1G07550 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 7.3e-24, P = 7.3e-24
 Identities = 126/483 (26%), Positives = 200/483 (41%)

Query:    34 IDCGSATSTTDPFNT-----TWQADDRYYTSGATSIVSEPLHFRFPHEKT-LRYFPPSSG 87
             +DCG A S   P+N      T+ +D  +   G T  V + L  +     T LRYFP   G
Sbjct:    32 LDCGLA-SNESPYNEANSNLTYISDADFIQGGKTGNVQKDLLMKLRKPYTVLRYFP--DG 88

Query:    88 KKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
              +NCY +       Y IR    Y NYDG ++SP FD+ +   +   W +    G + DG 
Sbjct:    89 IRNCYSLNVKQDTNYLIRVMFRYGNYDGLNNSPRFDLYLGPNI---WTTI-DMGKSGDGV 144

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLT-S 206
               ++    +   LD+C     T  P+I+S+E++   PL YD   I     L NY R   +
Sbjct:   145 LEEIIHITRSNILDICLVKTGTSTPMISSIELR---PLLYDTY-IAQTGSLRNYNRFYFT 200

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
              SN +   +  D  D  R W         +  +S   +   + I   + P +        
Sbjct:   201 DSNNY-IRYPQDVHD--RIWVPLILPEWTHINTSHHVI---DSIDGYDPPQDVLRTGAMP 254

Query:   267 TAIVSSGAIQYNL--AVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK------NVT 318
                     I +NL  A D    Y+      E+ ++ T    R F+++VN+K        T
Sbjct:   255 ANASDPMTITWNLKTATDQVYGYIYIAEIMEVQANET----REFEVVVNNKVHFDPFRPT 310

Query:   319 RVD---IFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLST 374
             R +   +FN+V         +    L  T  +  L P++ A  + +G+E     P    T
Sbjct:   311 RFEAQVMFNNVP--LTCEGGFCRLQLIKTPKST-LPPLMNAFEIFTGIE----FPQS-ET 362

Query:   375 VPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQ 434
                 VIA++ ++ S  + +R+ W GDPC P  +  W G++C+     T   I ++DL S 
Sbjct:   363 NQNDVIAVKNIQASYGL-NRISWQGDPCVPKQF-LWTGLSCNVIDVSTPPRIVKLDLSSS 420

Query:   435 GLKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQS-LVRLDLSDNQFTGSIPDSLTS 493
             GL G I   I                    P  L +   L+ ++LS N+ +G +P +L  
Sbjct:   421 GLNGVIPPSIQNLTQLQELDLSQNNLTGKVPEFLAKMKYLLVINLSGNKLSGLVPQALLD 480

Query:   494 SSK 496
               K
Sbjct:   481 RKK 483

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126540 AT4G29990 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 7.4e-24, P = 7.4e-24
 Identities = 128/484 (26%), Positives = 200/484 (41%)

Query:    34 IDCG---SATSTTDPFNTTWQADDRYYTSGAT-SIVSEPLHFRFPHE-KTLRYFPPSSGK 88
             IDCG    ++ T +  N  + +D  +  SG + SIVS+        + + +R FP   GK
Sbjct:    30 IDCGIPDDSSYTDEKTNMKYVSDLGFVESGTSHSIVSDLQTTSLERQFQNVRSFP--EGK 87

Query:    89 KNCYII-PNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
             +NCY I P    G +Y IRT  +Y NYDG S +P FD+ +   L   W S     L  + 
Sbjct:    88 RNCYDIRPQQGKGFKYLIRTRFMYGNYDGFSKTPEFDLYIGANL---WESVV---LINET 141

Query:   147 AY--SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRL 204
             A    ++        + +C        P ++ LE++ +   +YD            Y  L
Sbjct:   142 AIMTKEIIYTPPSDHIHVCLVDKNRGTPFLSVLEIRFLKNDTYDTP----------YEAL 191

Query:   205 TSGSNQWGPGFSNDA-----DDF-GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPN 258
               G  +W  G + +      DDF  R W      +SP  K+   S+T  E   N  +P +
Sbjct:   192 MLG-RRWDFGTATNLQIRYKDDFYDRIWMP---YKSPYQKTLNTSLTIDETNHNGFRPAS 247

Query:   259 YYPMKLYQTAIVSSGAIQYNLAVD-AKLDYLIWFHFAEIDSSVTKAGQRVFDILVND--- 314
                M+        S  +++N A D  +  + I+ HFAE+   + +   R FDI +ND   
Sbjct:   248 IV-MRSAIAPGNESNPLKFNWAPDDPRSKFYIYMHFAEV-RELQRNETREFDIYINDVIL 305

Query:   315 -KNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS 373
              +N     +F    S        + + +        L P++ A  I  +  +  +P D  
Sbjct:   306 AENFRPFYLFTDTRSTVDPVGRKMNEIVLQRTGVSTLPPIINAIEIYQINEFLQLPTD-- 363

Query:   374 TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGS 433
                + V AM  +K   RV  +  W GDPC P + ++WEG+ C  + + T+     ++L S
Sbjct:   364 --QQDVDAMTKIKFKYRV--KKNWQGDPCVPVD-NSWEGLECLHSDNNTSPKSIALNLSS 418

Query:   434 QGLKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492
              GL G I                        P  L    +L  L+L  N+ TGSIP  L 
Sbjct:   419 SGLTGQIDPAFANLTSINKLDLSNNSLTGKVPDFLASLPNLTELNLEGNKLTGSIPAKLL 478

Query:   493 SSSK 496
               SK
Sbjct:   479 EKSK 482

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	587
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-116
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	1e-58
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-08
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	9e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  357 bits (917), Expect = e-116
 Identities = 194/531 (36%), Positives = 276/531 (51%), Gaps = 23/531 (4%)

Query: 9   FFFLSLLLVLPLSLASSYPYKASYRIDCGS-ATSTTDPFNTTWQADDRYYTSGATSIVSE 67
               S LL +  SLAS  P+  + RI CG+     T P NT W   D  YT G  +  + 
Sbjct: 5   LLAASALLAVLASLASPEPF--TMRISCGARVNVRTAPTNTLW-YKDFAYTGGIPANATR 61

Query: 68  PLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE 127
           P  F  P  KTLRYFP S G +NCY I  +P G Y +R F            P FDVSVE
Sbjct: 62  P-SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVE 120

Query: 128 GTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSY 187
           GT + S +S W      +  +++   F+ DG   +CF+S     P I S+E+ Q+D  +Y
Sbjct: 121 GTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQVDDKAY 178

Query: 188 D-AATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDA--ASRSPNAKSSIKSV 244
           +   + G   IL    RL+ G+ +    F  D D  G  W  D            S +++
Sbjct: 179 NFGPSWGQGVILRTAKRLSCGAGK--SKF--DEDYSGDHWGGDRFWNRMQTFGSGSDQAI 234

Query: 245 TTRERITNTNQPPNYYPMKLYQTAIVSSG---AIQYNLAVDAKLDYLIWFHFAEIDSSVT 301
           +T   I   +  PN+YP  LYQ+A+VS+     + Y + VD   +Y +W HFAEID+S+T
Sbjct: 235 STENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSIT 294

Query: 302 KAGQRVFDILVN-DKNVTRVDIFNSVGS-FAAYSWHYVAKNLSSTELTVKLVPVVGA-AL 358
             G+RVFD+L+N D     VDI    G  + A   +     +S   LT+ L P  G  A+
Sbjct: 295 AEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVA-VSGRTLTIVLQPKKGTHAI 353

Query: 359 ISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPN 418
           I+ +E + ++  +  T+ E+V A++ LK SL +P R GWNGDPC P     W G  C  +
Sbjct: 354 INAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWSGADCQFD 412

Query: 419 KDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD 477
             +    I  + L +QGL+G+I + IS L +L ++NLS NS+ G +P  LG   SL  LD
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 478 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528
           LS N F GSIP+SL   + L+++ LN N L GRVP  L    +H  +F+ +
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Length = 623

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score =  199 bits (507), Expect = 1e-58
 Identities = 96/352 (27%), Positives = 148/352 (42%), Gaps = 39/352 (11%)

Query: 34  IDCGSA--TSTTDPF-NTTWQADDRYYTSGATSIVSEPL--HFRFPHEKTLRYFPPSSGK 88
           IDCG     S TDP    TW +D  +  +G +  +S+     F     KTLR FP   GK
Sbjct: 1   IDCGLPSNESYTDPSTGITWVSDAGFIDTGKSGNISKENSSSFLSKPYKTLRSFP--DGK 58

Query: 89  KNCYIIPNLPPG--RYYIRTFTVYDNYDGK---SHSPSFDVSVEGTLVFSWRSPWPEGLA 143
           +NCY +P  P    +Y IR   +Y NYDG    S  PSFD+ +   L   W +      +
Sbjct: 59  RNCYTLPVTPGKGTKYLIRATFLYGNYDGLNSVSSPPSFDLYLGVNL---WTTVNLSNDS 115

Query: 144 RDGAYSDLFAFV-KDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYG 202
            D    +    V K   L +C  +  T  P I++LE++ +    Y ++  G +  L    
Sbjct: 116 GDSVVKEYIIHVTKSDTLSVCLVNTGTGTPFISALELRPLPDSLYPSS--GGSQALKLVA 173

Query: 203 RLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPM 262
           RL  G ++    + +D   + R W+        ++    +  T+     ++N  P   P 
Sbjct: 174 RLNFGGSEGTIRYPDDV--YDRIWEPFF-----SSPGWSQISTSLSVDISSNNAPYIPPS 226

Query: 263 KLYQTAIVSSGA-----IQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317
            + QTA+  + A       ++L VD   +Y ++ HFAEI S       R FDI +N K V
Sbjct: 227 AVLQTAVTPTNASAPLNFTWDL-VDPNFEYYVYLHFAEIQSLE----TREFDIYINGKTV 281

Query: 318 -TRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENY 365
              V          A    +         L + LVP  G+    L++ LE +
Sbjct: 282 YGDVSPKYLGTDTGALYLDFPVNVSGGGLLNISLVPTSGSTLPPLLNALEIF 333

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 63.5 bits (155), Expect = 7e-12
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 220 DDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279
           D  G ++++D      +A   +        I  T  P      +LYQT   S  +  Y +
Sbjct: 14  DSDGITYEADTYFTGGSADYYVSDTNGSSSIAGTTDP------ELYQTERYSPSSFSYYI 67

Query: 280 AVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDIFNSVGSF 329
                 +Y +  HFAEI       G+RVFD+ V  K V +  DI    G  
Sbjct: 68  PCLENGNYTVILHFAEIYFGEDGLGRRVFDVYVQGKLVLKDFDIVAEAGGK 118

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           +D+ +  L+G I+ +   + +L  L+L+ N   G LP   G + L  LDLS NQF+G++P
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 489 DSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
             L S S+L  + L+ N L G +P+EL S
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSS 521

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 417 PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475
           P K  +   + Q+ L    L G I D++S    LV+L+LS N L G +P+   +   L +
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512
           LDLS NQ +G IP +L +   L  V +++N L G +P
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  +DL      G +  K+  LS L+ L LS N L G +P  L   + LV LDLS NQ +
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           G IP S +    L  + L+ N L G +P+ L
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 4e-09
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 431 LGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTGSIPD 489
           L S    G I   ++ L  L  L L +N   G +P  LG+ + L  LDLS N  TG IP+
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 490 SLTSSSKLQLVLLNNNLLEGRVPEEL 515
            L SS  L  ++L +N LEG +P+ L
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 4e-09
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494
           L G I   I  L  L++L+LS NSL G +P  + Q Q+L  L L  N FTG IP +LTS 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
            +LQ++ L +N   G +P+ L
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNL 352

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 35/154 (22%)

Query: 426 ISQIDLGSQGLKGYISDKISLLS-----------------------NLVNLNLSTNSLGG 462
           I  I+L +  L G I D I   S                       NL  L+LS N L G
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG 154

Query: 463 TLPSGLGQQSLVR-LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH 521
            +P+ +G  S ++ LDL  N   G IP+SLT+ + L+ + L +N L G++P EL      
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL------ 208

Query: 522 GGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSA 555
           G    L  +Y+     G N+    +P ++  L++
Sbjct: 209 GQMKSLKWIYL-----GYNNLSGEIPYEIGGLTS 237

Length = 968

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 29/152 (19%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLH----FRFPHEKTL----RYF 82
              I+CG     TD    T++A D Y+T G+        +         +  L    RY 
Sbjct: 2   VLAINCG-GPEHTDSDGITYEA-DTYFTGGSADYYVSDTNGSSSIAGTTDPELYQTERYS 59

Query: 83  PPSSGKKNCYIIPNLPPGRYYIRTFTVY-------DNYDGKSHSPSFDVSVEGTLVFSWR 135
           P S      Y IP L  G Y   T  ++       ++  G+     FDV V+G LV    
Sbjct: 60  PSSFS----YYIPCLENGNY---TVILHFAEIYFGEDGLGRRV---FDVYVQGKLVLKDF 109

Query: 136 SPWPEGLARDGAYSDLF--AFVKDGELDLCFY 165
               E   +       +    V DG L++ FY
Sbjct: 110 DIVAEAGGKGKTAHKEYIPVTVTDGTLEIHFY 141

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTGSI 487
           I LG   L G I  +I  L++L +L+L  N+L G +PS LG    L  L L  N+ +G I
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPE 513
           P S+ S  KL  + L++N L G +PE
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 25/115 (21%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ----------------- 471
           +DLG   L G I + ++ L++L  L L++N L G +P  LGQ                  
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 472 --------SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
                   SL  LDL  N  TG IP SL +   LQ + L  N L G +P  ++S+
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQQSLVRLDLSDNQFT 484
           ++ +DL    L G I   +  L NL  L L  N L G +P S    Q L+ LDLSDN  +
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
           G IP+ +     L+++ L +N   G++P  L S+
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRL---DLSDNQFTG 485
           +DL    L G I + +  L NL  L+L +N+  G +P  L   SL RL    L  N+F+G
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSG 346

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519
            IP +L   + L ++ L+ N L G +PE L S G
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFTGSI 487
           + L S    G I   +   +NL  L+LSTN+L G +P GL    +L +L L  N   G I
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIR----RGR-NDY 542
           P SL +   L+ V L +N   G +P E            L +VY   I     +GR N  
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTK---------LPLVYFLDISNNNLQGRINSR 447

Query: 543 DFGLPQDLMSLSAKRNRY 560
            + +P  L  LS  RN++
Sbjct: 448 KWDMPS-LQMLSLARNKF 464

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           +   +  L NL NL+LS N L           +L  LDLS N+ +  +P  +   S L+ 
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213

Query: 500 VLLNNNLLE 508
           + L+NN + 
Sbjct: 214 LDLSNNSII 222

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT------LPSGLGQQS-LV 474
             + +    LG +  K  ++  +    +L  L LS N  G        L  GL +   L 
Sbjct: 26  QVLRLEGNTLGEEAAKA-LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84

Query: 475 RLDLSDNQFTGSIP---DSLTSSSKLQLVLLNNNLLEGR 510
            LDLSDN          +SL  SS LQ + LNNN L  R
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	587
PLN03150	623	hypothetical protein; Provisional	100.0
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	100.0
PLN03150	623	hypothetical protein; Provisional	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.69
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.57
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.49
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.3
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	99.22
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.19
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.09
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.65
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.34
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.27
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.78
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.92
PRK15386	426	type III secretion protein GogB; Provisional	96.76
PRK15386	426	type III secretion protein GogB; Provisional	96.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.99
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	95.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.73
KOG3593	355	consensus Predicted receptor-like serine/threonine	94.73
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.95
smart00370	26	LRR Leucine-rich repeats, outliers.	89.95
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.67
smart00370	26	LRR Leucine-rich repeats, outliers.	88.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.72
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.46
KOG3593	355	consensus Predicted receptor-like serine/threonine	84.86

>PLN03150 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-84  Score=725.09  Aligned_cols=499  Identities=37%  Similarity=0.644  Sum_probs=410.5

Q ss_pred             HHHHHHHhhhhhhccCCCCCcEEEccCCCCCC-cCCCCceEeeCCCceecCCcccccCCCCCCCCCCceeeeeCCCCCCC
Q 007860           11 FLSLLLVLPLSLASSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKK   89 (587)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~i~cG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~y~t~R~f~~~~~~~   89 (587)
                      +|.+-++++...+++.+.+++|+||||++++. +|.++|+|++|..+ ++|.......+ ....++|+|+|+||..+|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~-~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~   82 (623)
T PLN03150          5 LLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAY-TGGIPANATRP-SFIAPPLKTLRYFPLSDGPE   82 (623)
T ss_pred             HHHHHHHHHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCccc-ccCccccccCc-ccccchhhccccCCcccccc
Confidence            33333333333444444677899999999876 67889999997443 44433322223 23457799999999777889


Q ss_pred             cceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEeeCCC
Q 007860           90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT  169 (587)
Q Consensus        90 ~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~~~~  169 (587)
                      +||+||+.++|+|+||+||+|||||+.++.|.|||++|++.|.+....+..  ....++||++++++++.++|||+|++.
T Consensus        83 ~cY~~~~~~~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~  160 (623)
T PLN03150         83 NCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGH  160 (623)
T ss_pred             cceEeeecCCCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCC
Confidence            999999989999999999999999998788999999999664443222221  234688999999999999999999988


Q ss_pred             CCceeeeEEeEecCCCCccccC-cCccceEeeeeeccCCCCCCCCCCCCCCCCC--CcccccCCCCCCCCCCCCceeeec
Q 007860          170 DPPVIASLEVQQIDPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTT  246 (587)
Q Consensus       170 ~~pfIn~iEi~~l~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~--~R~W~~d~~~~~~~~~~~~~~~~t  246 (587)
                      ++|||||||||++|+.+|.... .+++.+|+++||+||||......++|+||++  ||+|.+|++|..+    .+..+++
T Consensus       161 ~~pFIs~iEv~~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~st  236 (623)
T PLN03150        161 GDPAILSIEILQVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAIST  236 (623)
T ss_pred             CCCceeEEEEEEcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----ccccccc
Confidence            9999999999999999996432 2456679999999999986555578999999  9999999887632    2456677


Q ss_pred             cccccCCCCCCCCchHHHHHhhhccc---cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCc-cccccce
Q 007860          247 RERITNTNQPPNYYPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDI  322 (587)
Q Consensus       247 ~~~i~~~~~~~~~~P~~Vy~Ta~~~~---~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di  322 (587)
                      ...|+++..+|+.+|+.||||||++.   .+++|.|++++++.|+|||||||++......++|+|+|++||+ ...++|+
T Consensus       237 ~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di  316 (623)
T PLN03150        237 ENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDI  316 (623)
T ss_pred             ccccccccCCCccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccCh
Confidence            77788766667889999999999984   4799999999999999999999998544556899999999998 6778898


Q ss_pred             ecccCC-cceeeeeeeEeecCCccEEEEEcccchh-hhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCC
Q 007860          323 FNSVGS-FAAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGD  400 (587)
Q Consensus       323 ~~~~~~-~~~~~~~l~~l~l~~n~L~~~l~~~~~s-~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~  400 (587)
                      ....++ ..+.++.+.+. ..++.|++++.|..++ |+|||+|||++.+.+..+.++|+.+|+.+|..+..+...+|.|+
T Consensus       317 ~~~~g~~~~~~~~~~~v~-~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~  395 (623)
T PLN03150        317 VKMSGERYTALVLNKTVA-VSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGD  395 (623)
T ss_pred             hhhcCCcccceEEEeEEe-ecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCC
Confidence            776665 45666655543 3457899999998776 89999999999998888999999999999998865544589999


Q ss_pred             CCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEecc
Q 007860          401 PCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS  479 (587)
Q Consensus       401 pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls  479 (587)
                      ||.|.. |.|.|+.|..........++.|+|++|.+.|.+|..++.|++|+.|+|++|.+.|.+|..++. ++|+.|+|+
T Consensus       396 ~C~p~~-~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs  474 (623)
T PLN03150        396 PCVPQQ-HPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS  474 (623)
T ss_pred             CCCCcc-cccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC
Confidence            998765 689999996433222346899999999999999999999999999999999999999999999 999999999


Q ss_pred             CCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcc
Q 007860          480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG  519 (587)
Q Consensus       480 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~  519 (587)
                      +|+++|.+|+.++++++|+.|+|++|+++|.+|..++...
T Consensus       475 ~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~  514 (623)
T PLN03150        475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL  514 (623)
T ss_pred             CCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence            9999999999999999999999999999999999987653

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=100.00  E-value=6e-59  Score=482.73  Aligned_cols=319  Identities=27%  Similarity=0.477  Sum_probs=243.1

Q ss_pred             EccCCCCCC---cC-CCCceEeeCCCceecCCcccccC----CCCCCCCCCceeeeeCCCCCCCcceEeecC--CCceEE
Q 007860           34 IDCGSATST---TD-PFNTTWQADDRYYTSGATSIVSE----PLHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY  103 (587)
Q Consensus        34 i~cG~~~~~---~d-~~~~~w~~Dd~~~~~g~~~~~~~----~~~~~~~~y~t~R~f~~~~~~~~~Y~~pv~--~~~~yl  103 (587)
                      ||||++.+.   +| .+||+|++|++|+.+|.+..++.    ......++|+|+|+||  +|.|+||+||+.  .+++||
T Consensus         1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl   78 (347)
T PF12819_consen    1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL   78 (347)
T ss_pred             CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence            799998764   44 56999999998888777655422    1234468999999999  477899999997  345999


Q ss_pred             EEEEeecCCCCCCC-----CCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEec-CCeeEEEEeeCCCCC-ceeee
Q 007860          104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS  176 (587)
Q Consensus       104 vRl~F~~~n~~~~~-----~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~-~~~l~i~~~~~~~~~-pfIn~  176 (587)
                      |||||+|||||+++     +++.|||++|++.+.+..   .......++++|+++.+. ++.|.|||+|++.|. |||||
T Consensus        79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~---~~~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa  155 (347)
T PF12819_consen   79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVN---LSNSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA  155 (347)
T ss_pred             EEEEeccccccccccccccCCcceEEEECCceeEEEE---ecCCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence            99999999999863     257799999999854422   111112468999988888 799999999999776 99999


Q ss_pred             EEeEecCCCCccccCcCccceEeeeeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeeecccccc-CCCC
Q 007860          177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ  255 (587)
Q Consensus       177 iEi~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~t~~~i~-~~~~  255 (587)
                      ||||+||+.+|+.....++.+|++++|+|||+..  ..+||++|++||+|.++..      ...+..+++..+|+ ....
T Consensus       156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~--~~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~  227 (347)
T PF12819_consen  156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSS--SFIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN  227 (347)
T ss_pred             EEEEECCccceeccccCCCceeEEEEeecCCCcc--cccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence            9999999999954333567889999999999864  1278999999999996521      12466777766676 3344


Q ss_pred             CCCCchHHHHHhhhccc-----cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCccccccceec-ccCC-
Q 007860          256 PPNYYPMKLYQTAIVSS-----GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN-SVGS-  328 (587)
Q Consensus       256 ~~~~~P~~Vy~Ta~~~~-----~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~l~~~di~~-~~~~-  328 (587)
                      +++.||.+|||||+++.     .+++|.+ ++++..|+||||||||+......++|+|+|+|||+.... ++.. ..+. 
T Consensus       228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~  305 (347)
T PF12819_consen  228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD  305 (347)
T ss_pred             ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence            56779999999999992     3688888 889999999999999997655556899999999995433 4433 2222 


Q ss_pred             cceeeeeeeEeecCCccEEEEEcccchh---hhhhccccccc
Q 007860          329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL  367 (587)
Q Consensus       329 ~~~~~~~l~~l~l~~n~L~~~l~~~~~s---~~Ln~lei~~~  367 (587)
                      ..+.+.++.+....+..+.++|.+..++   |+|||+|||++
T Consensus       306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            3444544544433445788899988776   99999999975

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03150 hypothetical protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=231.78  Aligned_cols=319  Identities=18%  Similarity=0.256  Sum_probs=200.5

Q ss_pred             cEEEccCCCCCC--cCC----C--CceEeeCCCceecCC-----ccccc----CCCCCCCCCCceeeeeCCCCCCCcceE
Q 007860           31 SYRIDCGSATST--TDP----F--NTTWQADDRYYTSGA-----TSIVS----EPLHFRFPHEKTLRYFPPSSGKKNCYI   93 (587)
Q Consensus        31 ~~~i~cG~~~~~--~d~----~--~~~w~~Dd~~~~~g~-----~~~~~----~~~~~~~~~y~t~R~f~~~~~~~~~Y~   93 (587)
                      .+|||||+++..  .|.    -  .|.|.+|+.|..+..     ...+.    .+..+|..+|+|||.+... ....+|+
T Consensus       193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~  271 (623)
T PLN03150        193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYT  271 (623)
T ss_pred             EEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEE
Confidence            379999987432  222    2  699999876543211     11111    1233466799999998752 2456999


Q ss_pred             eecCCCceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEecCCCCcccc-CCCceEEEEEEEecCCeeEEEEeeCCCCC
Q 007860           94 IPNLPPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDP  171 (587)
Q Consensus        94 ~pv~~~~~ylvRl~F~~~n~~-~~~~~~~F~v~~~~~~~l~~~~~~~~~~-~~~~~~~e~i~~~~~~~l~i~~~~~~~~~  171 (587)
                      |++++++.|+|||||..-... .....++|+|++||+.+++.+|+....+ ...++++++.+.+.++.+.|+|+|.....
T Consensus       272 ~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~  351 (623)
T PLN03150        272 MDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTH  351 (623)
T ss_pred             eecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCc
Confidence            999888999999999643211 1224789999999999999998744322 24578899988888888999999987667


Q ss_pred             ceeeeEEeEecCCCCccccCcCccceEeeeeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeeecccccc
Q 007860          172 PVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT  251 (587)
Q Consensus       172 pfIn~iEi~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~t~~~i~  251 (587)
                      |+||||||+++...-..+. ..+..+|..+.. ..+            +...--|.+|.                     
T Consensus       352 pilNaiEI~~~~~~~~~t~-~~~~~aL~~~k~-~~~------------~~~~~~W~g~~---------------------  396 (623)
T PLN03150        352 AIINAIEVFEIITAESKTL-LEEVSALQTLKS-SLG------------LPLRFGWNGDP---------------------  396 (623)
T ss_pred             ceeeeeeeeeccccccccC-chHHHHHHHHHH-hcC------------CcccCCCCCCC---------------------
Confidence            9999999998764211100 001111111100 000            00000121110                     


Q ss_pred             CCCCCCCCchHHHHHhhhccccceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCccccccceecccCCcce
Q 007860          252 NTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAA  331 (587)
Q Consensus       252 ~~~~~~~~~P~~Vy~Ta~~~~~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~l~~~di~~~~~~~~~  331 (587)
                         ..    |..             +.|.   +    |  - |.+..   ..                       +    
T Consensus       397 ---C~----p~~-------------~~w~---G----v--~-C~~~~---~~-----------------------~----  416 (623)
T PLN03150        397 ---CV----PQQ-------------HPWS---G----A--D-CQFDS---TK-----------------------G----  416 (623)
T ss_pred             ---CC----Ccc-------------cccc---c----c--e-eeccC---CC-----------------------C----
Confidence               00    000             0000   0    0  0 10000   00                       0    


Q ss_pred             eeeeeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcc
Q 007860          332 YSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (587)
Q Consensus       332 ~~~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~  411 (587)
                       ......++++++.+.+.+|+.++                                                        
T Consensus       417 -~~~v~~L~L~~n~L~g~ip~~i~--------------------------------------------------------  439 (623)
T PLN03150        417 -KWFIDGLGLDNQGLRGFIPNDIS--------------------------------------------------------  439 (623)
T ss_pred             -ceEEEEEECCCCCccccCCHHHh--------------------------------------------------------
Confidence             00122334455544322221111                                                        


Q ss_pred             ceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcc
Q 007860          412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (587)
Q Consensus       412 gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~  490 (587)
                                .+.+|+.|+|++|.+.|.+|..++.|++|+.|+|++|+++|.+|+.++. ++|+.|+|++|+++|.+|..
T Consensus       440 ----------~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        440 ----------KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             ----------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence                      0124778999999999999999999999999999999999999999999 99999999999999999998


Q ss_pred             ccCC-CCCCEEEccCCcCcccCc
Q 007860          491 LTSS-SKLQLVLLNNNLLEGRVP  512 (587)
Q Consensus       491 l~~l-~~L~~L~Ls~N~l~g~ip  512 (587)
                      ++.+ .++..+++.+|......|
T Consensus       510 l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        510 LGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             HhhccccCceEEecCCccccCCC
Confidence            8764 467889999987654444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=5e-18  Score=201.39  Aligned_cols=193  Identities=30%  Similarity=0.448  Sum_probs=118.6

Q ss_pred             CchHHHHHHHHHHHhcCCCC--CCCCCC-CCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCC
Q 007860          374 TVPEQVIAMRALKESLRVPD--RMGWNG-DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNL  450 (587)
Q Consensus       374 ~~p~~~~aL~~lk~~~~~~~--~~~w~g-~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L  450 (587)
                      ..|+|..+|+++|..+..+.  ..+|+. +.|     |.|.|+.|...     .+++.|+|++|+++|.++..+..+++|
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~-----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L   95 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNSSADV-----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYI   95 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC-----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCC
Confidence            36789999999999875432  246853 455     79999999742     257778888888887777777788888


Q ss_pred             CEEEccCCCCCCCCCCCCC-C-CCccEEeccCCcCCccCC----------------------ccccCCCCCCEEEccCCc
Q 007860          451 VNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIP----------------------DSLTSSSKLQLVLLNNNL  506 (587)
Q Consensus       451 ~~L~Ls~N~l~g~ip~~~~-~-~~L~~L~Ls~N~l~g~iP----------------------~~l~~l~~L~~L~Ls~N~  506 (587)
                      +.|+|++|+++|.+|..+. . ++|++|+|++|+++|.+|                      ..++.+++|++|+|++|.
T Consensus        96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113         96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence            8888888887777777655 3 666666666666655544                      444444555555555555


Q ss_pred             CcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc------
Q 007860          507 LEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY------  560 (587)
Q Consensus       507 l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i------  560 (587)
                      +.+.+|..++++. +|+.|+|+              +.+|++|+|++|++.+.+|      .+|+.|++++|++      
T Consensus       176 l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        176 LVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             ccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence            5444454444443 34444443              3344555555555544444      2344444555543      


Q ss_pred             --CCCCCCcEEEccCCCCC
Q 007860          561 --QRQKSLMLLEMESQHAK  577 (587)
Q Consensus       561 --~~l~~L~~L~Ls~N~l~  577 (587)
                        ..+++|+.|+|++|+++
T Consensus       255 ~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             hHhCCCCCCEEECcCCeee
Confidence              33445555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=2.2e-19  Score=187.53  Aligned_cols=239  Identities=20%  Similarity=0.249  Sum_probs=141.7

Q ss_pred             eEeecCCccEE-EEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCC-CC----CCCCCCCCCCcCc
Q 007860          337 VAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRM-GW----NGDPCAPTNWDAW  410 (587)
Q Consensus       337 ~~l~l~~n~L~-~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~-~w----~g~pc~~~~~~~~  410 (587)
                      +-+++++|.++ ..+|.....  +..+..+++....+..+|+++.++.++.+.-...++. .-    +.-||.......-
T Consensus        10 rGvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHH--hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence            34566788877 467766665  7788889998888999999999999998754433321 00    1112211000000


Q ss_pred             cceeec--CCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCcc
Q 007860          411 EGITCH--PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS  486 (587)
Q Consensus       411 ~gv~c~--~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~  486 (587)
                      ..+.-+  +...-.+..|+.|||++|++. ..|..+..-+++-.|+||+|+|. +||..+.-  ..|-.||||+|+|. .
T Consensus        88 N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~  164 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-M  164 (1255)
T ss_pred             cccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-h
Confidence            000000  001112234555666666665 55555555566666666666665 55555443  55556666666665 5


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc---------------ccccceEECCCCccccccc----
Q 007860          487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLP----  547 (587)
Q Consensus       487 iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p----  547 (587)
                      +|+.+..|..|+.|+|++|.+.-.--..+-.+. +|+.|.++               +.+|..++||.|++. .+|    
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly  242 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY  242 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence            555566666666666666655310000011111 23333333               677888899999887 666    


Q ss_pred             --ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCC
Q 007860          548 --QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       548 --~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                        .+|..|+|+.|+|       ..|.+|+.|+||+|+|+.+|..
T Consensus       243 ~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a  286 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA  286 (1255)
T ss_pred             hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence              5688889999988       4577899999999999999974

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.71  E-value=1.1e-17  Score=156.72  Aligned_cols=141  Identities=29%  Similarity=0.397  Sum_probs=91.1

Q ss_pred             cEEEccCCCCCCcCCCCceEeeCCCceecCCcc------------cc--cCCCCCCCCCCceeeeeCCCCCCCcceEeec
Q 007860           31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IV--SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPN   96 (587)
Q Consensus        31 ~~~i~cG~~~~~~d~~~~~w~~Dd~~~~~g~~~------------~~--~~~~~~~~~~y~t~R~f~~~~~~~~~Y~~pv   96 (587)
                      .++||||++.. +|..|..|.+| .++.+|...            ..  +...+..+.+|+|.|+-+.    .+.|.||+
T Consensus         2 ~~~IN~Gg~~~-~~~~g~~w~~D-~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~   75 (174)
T PF11721_consen    2 VLRINAGGPAY-TDSSGIVWEAD-QYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV   75 (174)
T ss_dssp             EEEEEETSSSE-EETTTEEE-SS-SSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred             EEEEECCCCcc-cCCCCCEEcCC-CCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence            47999999865 77889999995 444433330            00  1111233579999999764    28999997


Q ss_pred             CCCceEEEEEEeecCCCCC-----CCCCCceEEEECCEEEEecCCCCccccCCC-ceEEEE-EEEecCCeeEEEEee---
Q 007860           97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS---  166 (587)
Q Consensus        97 ~~~~~ylvRl~F~~~n~~~-----~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~-~~~~e~-i~~~~~~~l~i~~~~---  166 (587)
                      .+.|.|.|||||....+..     ....++|||+++|+.++++||++.+++... ++++++ -+.+.++.|.|+|..   
T Consensus        76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~  155 (174)
T PF11721_consen   76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK  155 (174)
T ss_dssp             -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred             CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence            7999999999995332222     123789999999999999999988776655 777887 556799999999995   


Q ss_pred             --------CCCCCceeeeE
Q 007860          167 --------FATDPPVIASL  177 (587)
Q Consensus       167 --------~~~~~pfIn~i  177 (587)
                              ...+.|.||||
T Consensus       156 ~~~~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  156 GTLCIPFIGSYGNPLISAI  174 (174)
T ss_dssp             SEEEEEEESSSSSSSEEEE
T ss_pred             CcEEeeccccCCCcEEeeC
Confidence                    44566888887

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.69  E-value=5.6e-17  Score=192.41  Aligned_cols=247  Identities=25%  Similarity=0.280  Sum_probs=185.3

Q ss_pred             eeEEEEEECCccccccceecccCCcceeeeeeeEeecCCccEEEEEcccch-hhhhhcccccccccCCC-CCchHHHHHH
Q 007860          305 QRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVG-AALISGLENYALVPNDL-STVPEQVIAM  382 (587)
Q Consensus       305 ~r~F~V~in~~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~-s~~Ln~lei~~~~~~~~-~~~p~~~~aL  382 (587)
                      .|+-.+.+.++.+.+..     .........++.+++++|++.+.+|.... .  +..++.+.+..+.+ +.+|.  ..+
T Consensus        69 ~~v~~L~L~~~~i~~~~-----~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~--l~~L~~L~Ls~n~l~~~~p~--~~l  139 (968)
T PLN00113         69 SRVVSIDLSGKNISGKI-----SSAIFRLPYIQTINLSNNQLSGPIPDDIFTT--SSSLRYLNLSNNNFTGSIPR--GSI  139 (968)
T ss_pred             CcEEEEEecCCCccccC-----ChHHhCCCCCCEEECCCCccCCcCChHHhcc--CCCCCEEECcCCccccccCc--ccc
Confidence            46666666665544321     11112234678889999999888887654 3  67788888877764 34443  112


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCC
Q 007860          383 RALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG  462 (587)
Q Consensus       383 ~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  462 (587)
                      ..++....     .++          ...+.  .+.....+.+|+.|+|++|.+.+.+|..++++++|++|+|++|.+.+
T Consensus       140 ~~L~~L~L-----s~n----------~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  202 (968)
T PLN00113        140 PNLETLDL-----SNN----------MLSGE--IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG  202 (968)
T ss_pred             CCCCEEEC-----cCC----------ccccc--CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC
Confidence            22222111     111          11110  01112334578999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-------------
Q 007860          463 TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-------------  528 (587)
Q Consensus       463 ~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-------------  528 (587)
                      .+|..++. ++|++|+|++|++++.+|..++.+++|++|++++|++.+.+|..++.+. +|+.|+++             
T Consensus       203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~  281 (968)
T PLN00113        203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIF  281 (968)
T ss_pred             cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeeccCchhHh
Confidence            99999999 9999999999999999999999999999999999999999999998876 58988887             


Q ss_pred             -ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCC
Q 007860          529 -VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       529 -l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~  578 (587)
                       +.+|+.|+|++|.+.+.+|      ++|+.|++++|.+        ..+++|+.|+|++|++++
T Consensus       282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence             5678999999999988777      3677788988876        467889999999999985

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.63  E-value=1.5e-16  Score=149.08  Aligned_cols=141  Identities=24%  Similarity=0.397  Sum_probs=85.4

Q ss_pred             eeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeee-c--cccccCCCCCCCCchHHHHHhhhccccceEE
Q 007860          201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT-T--RERITNTNQPPNYYPMKLYQTAIVSSGAIQY  277 (587)
Q Consensus       201 ~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~-t--~~~i~~~~~~~~~~P~~Vy~Ta~~~~~~lt~  277 (587)
                      ++||||||..      + +|..++.|.+|+.|..+.+.   ...+ .  ..........+...+..+|||+|.....++|
T Consensus         2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~---y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y   71 (174)
T PF11721_consen    2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWG---YYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSY   71 (174)
T ss_dssp             EEEEEETSSS------E-EETTTEEE-SSSSSTTSS--------------SSTTS--TTS-HHHHHTTT-----SSSEEE
T ss_pred             EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCcc---cccccccccccccccccccCCCchhhhHhhcCCCCceEE
Confidence            5899999875      3 57789999999988754430   0000 0  0001111122233567999999985447999


Q ss_pred             EEecCCCCcEEEEEEeeecccCC----CCCceeEEEEEECCc-cccccceecccCCcc-eeeeeeeEeecCCccEEEEEc
Q 007860          278 NLAVDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSFA-AYSWHYVAKNLSSTELTVKLV  351 (587)
Q Consensus       278 ~~~v~~~~~y~v~lhF~ei~~~~----~~~~~r~F~V~in~~-~l~~~di~~~~~~~~-~~~~~l~~l~l~~n~L~~~l~  351 (587)
                      .+|+.+++.|.|+|||||+....    ...++|+|||+|||+ .++++||+..+|... +....+......++.|.+.|.
T Consensus        72 ~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~  151 (174)
T PF11721_consen   72 DIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFV  151 (174)
T ss_dssp             EEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEE
T ss_pred             EEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEE
Confidence            99966789999999999988643    236899999999998 789999999888744 555555344557777887777

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.57  E-value=9.7e-16  Score=159.84  Aligned_cols=229  Identities=19%  Similarity=0.196  Sum_probs=145.3

Q ss_pred             eeeeEeecCCccEEEEEcc-cchhhhhhcccccccccCCCCCchHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCCcCcc
Q 007860          334 WHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQVIA-MRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (587)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~-~~~s~~Ln~lei~~~~~~~~~~~p~~~~a-L~~lk~~~~~~~~~~w~g~pc~~~~~~~~~  411 (587)
                      ..+..+++++|.++ .+.. ...+  +|.+-.++++.|.++++|.-+-. |.+++..-..-+...-.       .|-.+.
T Consensus       173 ~ni~~L~La~N~It-~l~~~~F~~--lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-------e~ltFq  242 (873)
T KOG4194|consen  173 VNIKKLNLASNRIT-TLETGHFDS--LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-------EGLTFQ  242 (873)
T ss_pred             CCceEEeecccccc-ccccccccc--cchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-------hhhhhc
Confidence            35777888888776 3332 2333  77788889999999999976554 66666532211111000       000111


Q ss_pred             ceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcc
Q 007860          412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (587)
Q Consensus       412 gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~  490 (587)
                                .+..++.|.|..|++...-...|..|.++++|+|+.|++..---.++.. ++|+.|+||+|.++-..++.
T Consensus       243 ----------gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  243 ----------GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             ----------CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence                      1234566666666666555556666666666666666666333333333 66666666666666556666


Q ss_pred             ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCcccccc---------c
Q 007860          491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGL---------P  547 (587)
Q Consensus       491 l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~---------p  547 (587)
                      +...++|+.|+|+.|+++ +++++-+.....|+.|.|+              +.+|++|+|++|.+++.+         .
T Consensus       313 WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             hhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            666666666666666666 4554444444456666666              567888888888887532         2


Q ss_pred             ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCCC
Q 007860          548 QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       548 ~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      +.|+.|+|.+|+|        +++..|+.|||.+|.|..+-.+-
T Consensus       392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence            5688888999987        78999999999999887765543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.57  E-value=2.1e-16  Score=165.56  Aligned_cols=243  Identities=23%  Similarity=0.277  Sum_probs=160.8

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~  414 (587)
                      +.+-+.+...+|. .+|...+.  +..+|.+.+..|.+.++-.++..|-.++....-.+...-.|-|-..-.....+-+.
T Consensus        33 ~~~WLkLnrt~L~-~vPeEL~~--lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   33 QMTWLKLNRTKLE-QVPEELSR--LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD  109 (1255)
T ss_pred             heeEEEechhhhh-hChHHHHH--HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence            3445556666666 66777665  78888888888887777777777777766543333222233221100000111111


Q ss_pred             e-------cCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc-
Q 007860          415 C-------HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-  485 (587)
Q Consensus       415 c-------~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g-  485 (587)
                      .       .+.......++..|+|++|+|..+...-+.+|+.|-.||||+|+|. .+|+.+.. ..|++|+|++|.|.- 
T Consensus       110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf  188 (1255)
T KOG0444|consen  110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF  188 (1255)
T ss_pred             cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH
Confidence            1       1222233456788999999998544456789999999999999999 88887777 788888888876531 


Q ss_pred             ------------------------cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-------------
Q 007860          486 ------------------------SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-------------  528 (587)
Q Consensus       486 ------------------------~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-------------  528 (587)
                                              .+|.++-.+.+|..+|||.|++. .+|+.+.++. +|+.|+||             
T Consensus       189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~iteL~~~~~~  266 (1255)
T KOG0444|consen  189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNKITELNMTEGE  266 (1255)
T ss_pred             HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCceeeeeccHHH
Confidence                                    25556666777788888888887 6888888877 58888888             


Q ss_pred             ccccceEECCCCcccccccc-------------------------ccccc------ccccccc-------CCCCCCcEEE
Q 007860          529 VVYICCIRRGRNDYDFGLPQ-------------------------DLMSL------SAKRNRY-------QRQKSLMLLE  570 (587)
Q Consensus       529 l~~L~~L~L~~N~l~~~~p~-------------------------~L~~L------~l~~N~i-------~~l~~L~~L~  570 (587)
                      ..+|++|+||+|+++ .+|.                         .++.|      .+++|++       .++.+|+.|.
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~  345 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK  345 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc
Confidence            455667777777776 4553                         22222      1334443       5677888888


Q ss_pred             ccCCCCCCCCCCCC
Q 007860          571 MESQHAKGLPTLPL  584 (587)
Q Consensus       571 Ls~N~l~~~P~~~~  584 (587)
                      |++|+|-.+|+-++
T Consensus       346 L~~NrLiTLPeaIH  359 (1255)
T KOG0444|consen  346 LDHNRLITLPEAIH  359 (1255)
T ss_pred             ccccceeechhhhh
Confidence            89998888887653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.57  E-value=3.7e-17  Score=163.68  Aligned_cols=224  Identities=22%  Similarity=0.296  Sum_probs=123.9

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCC-C--CCCCCCCCCC--cC
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMG-W--NGDPCAPTNW--DA  409 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~-w--~g~pc~~~~~--~~  409 (587)
                      .++++++.+|++. ++||+++.  +.++.-+.++.+.+..+|+++..+..+++..-..+... -  ....|..-..  ..
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGE--LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHH--HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence            4677788888887 88888876  66666667777778888888888888877542221100 0  0000000000  00


Q ss_pred             ccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCC
Q 007860          410 WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP  488 (587)
Q Consensus       410 ~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP  488 (587)
                      -..+...+.....+.++..+++.+|++....|+.+ +|+.|++||.-+|.+. .+|+.++. .+|+-|+|..|++. .+|
T Consensus       146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP  222 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP  222 (565)
T ss_pred             ccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence            00111111111222345556666666663333333 3666666666666665 66666666 66666666666666 566


Q ss_pred             ccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccc------ccccccccccccCC
Q 007860          489 DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQ------DLMSLSAKRNRYQR  562 (587)
Q Consensus       489 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~------~L~~L~l~~N~i~~  562 (587)
                       +|..+..|+.|+++.|++. .+|.+.++.          +++|.+|+|..|++. +.|.      +|..||+++|.|+.
T Consensus       223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~----------L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  223 -EFPGCSLLKELHVGENQIE-MLPAEHLKH----------LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             -CCCccHHHHHHHhcccHHH-hhHHHHhcc----------cccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence             4666666666666666666 566665542          334556677777776 6663      34455555555422


Q ss_pred             CC------CCcEEEccCCCCC
Q 007860          563 QK------SLMLLEMESQHAK  577 (587)
Q Consensus       563 l~------~L~~L~Ls~N~l~  577 (587)
                      +.      +|+.|-+.+|.|+
T Consensus       290 Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  290 LPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             CCcccccceeeehhhcCCchH
Confidence            11      4455555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.49  E-value=1.4e-15  Score=152.54  Aligned_cols=147  Identities=24%  Similarity=0.345  Sum_probs=95.9

Q ss_pred             eeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccceee
Q 007860          336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC  415 (587)
Q Consensus       336 l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c  415 (587)
                      +.++.+.+|++. .+||..-.  +..+.-++...+.++++|++++.|..+...+...+....  -|-+            
T Consensus       162 l~~l~~~~n~l~-~l~~~~i~--m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--lPef------------  224 (565)
T KOG0472|consen  162 LSKLDLEGNKLK-ALPENHIA--MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--LPEF------------  224 (565)
T ss_pred             HHHhhccccchh-hCCHHHHH--HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc--CCCC------------
Confidence            334444555554 33333322  333334444445566677776666666554432221110  0111            


Q ss_pred             cCCCCCCceeEEEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccC
Q 007860          416 HPNKDETAVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (587)
Q Consensus       416 ~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~  493 (587)
                           ..+..+..+.++.|.|. .+|++.+ .|.+|..|||..|++. +.|+.++. .+|+.||+|+|.++ .+|.++++
T Consensus       225 -----~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn  296 (565)
T KOG0472|consen  225 -----PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN  296 (565)
T ss_pred             -----CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence                 11233667788888887 6776665 8899999999999998 89999988 89999999999999 67888998


Q ss_pred             CCCCCEEEccCCcCc
Q 007860          494 SSKLQLVLLNNNLLE  508 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~  508 (587)
                      + .|+.|-+.+|++.
T Consensus       297 l-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLR  310 (565)
T ss_pred             c-eeeehhhcCCchH
Confidence            8 8888888888664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.49  E-value=2.9e-14  Score=149.01  Aligned_cols=158  Identities=24%  Similarity=0.318  Sum_probs=127.1

Q ss_pred             CCCCCCCCcCccceeecCCCCCC----------ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCC
Q 007860          400 DPCAPTNWDAWEGITCHPNKDET----------AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG  469 (587)
Q Consensus       400 ~pc~~~~~~~~~gv~c~~~~~~~----------~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  469 (587)
                      .+|...|.|.-.-..|+......          +...+.|++++|.++..-+.+|.++++|++++|..|.|+ .||....
T Consensus        44 ~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~  122 (873)
T KOG4194|consen   44 SECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH  122 (873)
T ss_pred             ccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc
Confidence            46766666777777787654321          335678999999999888999999999999999999999 9998777


Q ss_pred             C-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccce
Q 007860          470 Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICC  534 (587)
Q Consensus       470 ~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~  534 (587)
                      . .+|+.|+|.+|.++..-.+++..++.|+.||||.|.++ .+|..-+....+++.|+|+              +++|.+
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t  201 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT  201 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence            7 78999999999999666678888999999999999998 6876655555578888888              677888


Q ss_pred             EECCCCccccccc-------ccccccccccccc
Q 007860          535 IRRGRNDYDFGLP-------QDLMSLSAKRNRY  560 (587)
Q Consensus       535 L~L~~N~l~~~~p-------~~L~~L~l~~N~i  560 (587)
                      |.|++|+++ .+|       +.|+.|+|.+|+|
T Consensus       202 lkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  202 LKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             eecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence            888888887 555       3466677777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=1.3e-15  Score=136.44  Aligned_cols=144  Identities=26%  Similarity=0.393  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..++.|.|++|+++ .+|+.+.+|.+|+.|++++|++. .+|.+++. ++|++|+++-|++. .+|..|+.++.|+.|||
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            45788999999998 78888999999999999999998 89999998 99999999999998 89999999999999999


Q ss_pred             cCCcCc-ccCchhhhhcccCCceeeccccccceEECCCCcccccccccccc------cccccccc-------CCCCCCcE
Q 007860          503 NNNLLE-GRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMS------LSAKRNRY-------QRQKSLML  568 (587)
Q Consensus       503 s~N~l~-g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~------L~l~~N~i-------~~l~~L~~  568 (587)
                      +.|++. ..+|..|+-+.           .|+.|+|++|.|. .+|++++.      |.+..|.+       ..+..|++
T Consensus       110 tynnl~e~~lpgnff~m~-----------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMT-----------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             cccccccccCCcchhHHH-----------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence            999886 45677776544           3556677777776 56644333      33555654       55667888


Q ss_pred             EEccCCCCCCCCCC
Q 007860          569 LEMESQHAKGLPTL  582 (587)
Q Consensus       569 L~Ls~N~l~~~P~~  582 (587)
                      |.+++|+++.+|..
T Consensus       178 lhiqgnrl~vlppe  191 (264)
T KOG0617|consen  178 LHIQGNRLTVLPPE  191 (264)
T ss_pred             HhcccceeeecChh
Confidence            89999999888864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.39  E-value=3e-14  Score=127.85  Aligned_cols=159  Identities=22%  Similarity=0.345  Sum_probs=93.8

Q ss_pred             eeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccceee
Q 007860          336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC  415 (587)
Q Consensus       336 l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c  415 (587)
                      .+.+.++.|+++ .+||.+..  +-.+|++.+..+.+..+|..+..|.+++..-..-+                  .+.-
T Consensus        35 ITrLtLSHNKl~-~vppnia~--l~nlevln~~nnqie~lp~~issl~klr~lnvgmn------------------rl~~   93 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN------------------RLNI   93 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHH--hhhhhhhhcccchhhhcChhhhhchhhhheecchh------------------hhhc
Confidence            445668899998 67777766  77889999988888888888877777765321111                  1111


Q ss_pred             cCCCCCCceeEEEEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccC
Q 007860          416 HPNKDETAVVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (587)
Q Consensus       416 ~~~~~~~~~~l~~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~  493 (587)
                      .+.+.+.++.++.|||+.|++. ..+|..|..|+.|+-|+|+.|.+. .+|+.++. ++|+.|.+..|.+- ++|.+++.
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~  171 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD  171 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence            1222233344555555555553 235555555555555555555555 55555555 55555555555555 55555555


Q ss_pred             CCCCCEEEccCCcCcccCchhhhhc
Q 007860          494 SSKLQLVLLNNNLLEGRVPEELYSI  518 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~l~~~  518 (587)
                      ++.|+.|++.+|.++ .+|++++++
T Consensus       172 lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             HHHHHHHhcccceee-ecChhhhhh
Confidence            555555555555555 455555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.30  E-value=1.9e-12  Score=146.43  Aligned_cols=186  Identities=22%  Similarity=0.346  Sum_probs=114.7

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~  414 (587)
                      .+..+++++|+++ .+|....    ..++.+.+..+.+..+|..+..  .++......     +          ....+ 
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~--~L~~L~Ls~-----N----------~L~~L-  256 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATLPD--TIQEMELSI-----N----------RITEL-  256 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhhhc--cccEEECcC-----C----------ccCcC-
Confidence            4667788899888 6665442    3577777777777777754321  222211110     0          00000 


Q ss_pred             ecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCC
Q 007860          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSS  494 (587)
Q Consensus       415 c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l  494 (587)
                        +..  ....|+.|+|++|+|+ .+|..+.  ++|+.|+|++|+|+ .+|..+. .+|+.|++++|+++ .+|..+.  
T Consensus       257 --P~~--l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~--  324 (754)
T PRK15370        257 --PER--LPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP-SGITHLNVQSNSLT-ALPETLP--  324 (754)
T ss_pred             --Chh--HhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch-hhHHHHHhcCCccc-cCCcccc--
Confidence              000  1124788999999998 5676554  58999999999998 5665433 57888999999998 5776543  


Q ss_pred             CCCCEEEccCCcCcccCchhhhhcccCCceeeccc-----------cccceEECCCCccccccc----cccccccccccc
Q 007860          495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSV-----------VYICCIRRGRNDYDFGLP----QDLMSLSAKRNR  559 (587)
Q Consensus       495 ~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl-----------~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~  559 (587)
                      ++|+.|++++|.++ .+|..+.   .+|+.|+++.           .+|+.|+|++|+|+ .+|    ..|+.|++++|+
T Consensus       325 ~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~  399 (754)
T PRK15370        325 PGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQITVLPETLPPTITTLDVSRNALT-NLPENLPAALQIMQASRNN  399 (754)
T ss_pred             ccceeccccCCccc-cCChhhc---CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCC
Confidence            68889999999988 4776553   3455555551           23445555555554 333    234455555555


Q ss_pred             c
Q 007860          560 Y  560 (587)
Q Consensus       560 i  560 (587)
                      |
T Consensus       400 L  400 (754)
T PRK15370        400 L  400 (754)
T ss_pred             c
Confidence            5

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=99.22  E-value=5e-11  Score=124.28  Aligned_cols=151  Identities=23%  Similarity=0.323  Sum_probs=98.8

Q ss_pred             cEEEccCCCC--CC--cCCCCceEeeC---CCceecCC-ccc----ccCCCCCCCCCCceeeeeCCCCC-CCcceEeecC
Q 007860           31 SYRIDCGSAT--ST--TDPFNTTWQAD---DRYYTSGA-TSI----VSEPLHFRFPHEKTLRYFPPSSG-KKNCYIIPNL   97 (587)
Q Consensus        31 ~~~i~cG~~~--~~--~d~~~~~w~~D---d~~~~~g~-~~~----~~~~~~~~~~~y~t~R~f~~~~~-~~~~Y~~pv~   97 (587)
                      .+|+|||++.  ..  .|.-.|.|.+.   ..+..... ..+    ......+|..+|+|||.....+. -..+|.+ ++
T Consensus       180 ~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~  258 (347)
T PF12819_consen  180 VYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VD  258 (347)
T ss_pred             EEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CC
Confidence            4799999986  22  45667999962   11111011 111    11234567789999999875321 2347778 77


Q ss_pred             CCceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecC-CeeEEEEeeCCCC--Cce
Q 007860           98 PPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATD--PPV  173 (587)
Q Consensus        98 ~~~~ylvRl~F~~~n~~-~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~-~~l~i~~~~~~~~--~pf  173 (587)
                      ++..|+||+||..=-.. .....++|+|++||+.+.+.+++........+.++++++.+++ +.+.|+|+++..+  .|+
T Consensus       259 ~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppi  338 (347)
T PF12819_consen  259 PGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPI  338 (347)
T ss_pred             CCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCce
Confidence            77899999999531111 1122689999999999776555422222234457888887766 4699999998765  499


Q ss_pred             eeeEEeEec
Q 007860          174 IASLEVQQI  182 (587)
Q Consensus       174 In~iEi~~l  182 (587)
                      |||+||+.+
T Consensus       339 LNalEIy~v  347 (347)
T PF12819_consen  339 LNALEIYKV  347 (347)
T ss_pred             eEeeeeEeC
Confidence            999999864

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.19  E-value=3.7e-12  Score=140.02  Aligned_cols=164  Identities=23%  Similarity=0.272  Sum_probs=109.4

Q ss_pred             eeeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (587)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv  413 (587)
                      ..++.++++.++++ .+|.-.+.  +..+|...+..+.+..+|.++..+.+++.....-+.                  +
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne------------------l  299 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYNE------------------L  299 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh------------------h
Confidence            34666777888777 56633444  666788888888889999999988888764321111                  1


Q ss_pred             eecCCCCCCceeEEEEEcCCCCCcccCchhhc-------------------------CCCCCCEEEccCCCCCCCCCCCC
Q 007860          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKIS-------------------------LLSNLVNLNLSTNSLGGTLPSGL  468 (587)
Q Consensus       414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~-------------------------~l~~L~~L~Ls~N~l~g~ip~~~  468 (587)
                      .-.+........|+.|+|..|+|....+..+.                         .++.|+.|.+.+|.|+...-+-+
T Consensus       300 ~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  300 EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence            11111122234588899999998733322222                         23446677777888876665566


Q ss_pred             CC-CCccEEeccCCcCCccCCcc-ccCCCCCCEEEccCCcCcccCchhhhhccc
Q 007860          469 GQ-QSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVLLNNNLLEGRVPEELYSIGV  520 (587)
Q Consensus       469 ~~-~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~  520 (587)
                      .. ++|+.|+|++|+|. .+|.. +.++..|+.|+||+|++. .+|..+..+..
T Consensus       380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~  431 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR  431 (1081)
T ss_pred             ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence            66 88888888888887 67764 567788888888888887 68877776653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.18  E-value=1e-10  Score=131.78  Aligned_cols=145  Identities=23%  Similarity=0.248  Sum_probs=84.2

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCcccc------------
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT------------  492 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~------------  492 (587)
                      .++.|++.+|+|+. +|.   .+++|++|+|++|+|+ .+|...  ++|+.|++++|+|+ .+|..+.            
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp--~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~L  294 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLP--PGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQL  294 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcc--cccceeeccCCchh-hhhhchhhcCEEECcCCcc
Confidence            57888999999884 554   3578899999999998 566422  56666666666665 3443211            


Q ss_pred             -----CCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------ccccceEECCCCcccc--ccccccccccc
Q 007860          493 -----SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------VVYICCIRRGRNDYDF--GLPQDLMSLSA  555 (587)
Q Consensus       493 -----~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------l~~L~~L~L~~N~l~~--~~p~~L~~L~l  555 (587)
                           .+++|+.|+|++|+|++ +|..    ...|+.|+++          ..+|+.|+|++|+|+.  .+|.+|..|++
T Consensus       295 t~LP~~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~L  369 (788)
T PRK15387        295 TSLPVLPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWA  369 (788)
T ss_pred             ccccccccccceeECCCCcccc-CCCC----cccccccccccCccccccccccccceEecCCCccCCCCCCCcccceehh
Confidence                 11345555555555552 3321    1123333333          1245566666666653  22345566666


Q ss_pred             cccccCCCC----CCcEEEccCCCCCCCCCC
Q 007860          556 KRNRYQRQK----SLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       556 ~~N~i~~l~----~L~~L~Ls~N~l~~~P~~  582 (587)
                      ++|+|..++    .|+.|+|++|+|+++|..
T Consensus       370 s~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l  400 (788)
T PRK15387        370 YNNRLTSLPALPSGLKELIVSGNRLTSLPVL  400 (788)
T ss_pred             hccccccCcccccccceEEecCCcccCCCCc
Confidence            666666655    466667777777766654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.15  E-value=8.5e-12  Score=125.52  Aligned_cols=107  Identities=22%  Similarity=0.289  Sum_probs=78.7

Q ss_pred             CCCCCCCcCc---cceeecCCCC-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C
Q 007860          401 PCAPTNWDAW---EGITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q  471 (587)
Q Consensus       401 pc~~~~~~~~---~gv~c~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~  471 (587)
                      .|...|.|+-   .-|+|...+.     ..++..+.|+|..|+|+...+..|+.+++|+.||||+|.|+..-|+.|.. .
T Consensus        36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~  115 (498)
T KOG4237|consen   36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA  115 (498)
T ss_pred             cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH
Confidence            4544444665   5577876543     22456788999999999888899999999999999999999888888888 6


Q ss_pred             CccEE-eccCCcCCccCC-ccccCCCCCCEEEccCCcCc
Q 007860          472 SLVRL-DLSDNQFTGSIP-DSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       472 ~L~~L-~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      +|..| ++++|+|+ .+| ..|+.|.+|+.|.+.-|++.
T Consensus       116 ~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen  116 SLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             hhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhc
Confidence            65555 55669998 555 45666666666666655555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=7.1e-12  Score=131.26  Aligned_cols=172  Identities=28%  Similarity=0.427  Sum_probs=109.7

Q ss_pred             cccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhh
Q 007860          365 YALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI  444 (587)
Q Consensus       365 ~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l  444 (587)
                      .++..+...++|.++.++..+.......+        |          +.|.+.....+..++.|+|+.|+++ .+|..+
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n--------~----------~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l  140 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHN--------C----------IRTIPEAICNLEALTFLDLSSNQLS-HLPDGL  140 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhc--------c----------ceecchhhhhhhHHHHhhhccchhh-cCChhh
Confidence            34455556667777666666654332221        1          1111111122334667777777776 677777


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCc
Q 007860          445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG  523 (587)
Q Consensus       445 ~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~  523 (587)
                      +.|+ |+.|-+++|+++ .+|+.++. ..|..||.+.|++. .+|..++.+.+|+.|.+..|++. .+|++++.+.    
T Consensus       141 C~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp----  212 (722)
T KOG0532|consen  141 CDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP----  212 (722)
T ss_pred             hcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----
Confidence            7776 777777777777 77777777 77777777777777 77777777777777777777777 6777777433    


Q ss_pred             eeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCC
Q 007860          524 AFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       524 ~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                              |..||++.|+++ .+|-.          |.+|+.|++|-|.+|.|+..|..
T Consensus       213 --------Li~lDfScNkis-~iPv~----------fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  213 --------LIRLDFSCNKIS-YLPVD----------FRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             --------eeeeecccCcee-ecchh----------hhhhhhheeeeeccCCCCCChHH
Confidence                    334555566666 56654          34455777777777777777653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=7.8e-11  Score=133.36  Aligned_cols=145  Identities=22%  Similarity=0.362  Sum_probs=86.4

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  505 (587)
                      |+.|+|++|+|+ .+|..+.  .+|+.|+|++|.+. .+|..+. .+|+.|++++|+|+ .+|..+.  ++|+.|++++|
T Consensus       222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N  293 (754)
T PRK15370        222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN  293 (754)
T ss_pred             CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh-CCCCEEECcCCccC-ccccccC--CCCcEEECCCC
Confidence            444555555544 2333322  24555555555555 4444332 45677777777776 5666543  46777777777


Q ss_pred             cCcccCchhhhhcccCCceeecc-----------ccccceEECCCCcccc---ccccccccccccccccCC-----CCCC
Q 007860          506 LLEGRVPEELYSIGVHGGAFDLS-----------VVYICCIRRGRNDYDF---GLPQDLMSLSAKRNRYQR-----QKSL  566 (587)
Q Consensus       506 ~l~g~ip~~l~~~~~~L~~l~Ls-----------l~~L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i~~-----l~~L  566 (587)
                      +|+ .+|..+..   .|+.|+++           ..+|+.|++++|.++.   .+|++|+.|++++|+|..     ...|
T Consensus       294 ~Lt-~LP~~lp~---sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L  369 (754)
T PRK15370        294 SIR-TLPAHLPS---GITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTI  369 (754)
T ss_pred             ccc-cCcccchh---hHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhhcCCc
Confidence            776 45543321   23444433           2457777788887763   233578888888888743     2468


Q ss_pred             cEEEccCCCCCCCCCC
Q 007860          567 MLLEMESQHAKGLPTL  582 (587)
Q Consensus       567 ~~L~Ls~N~l~~~P~~  582 (587)
                      +.|+|++|+|+.+|..
T Consensus       370 ~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        370 TTLDVSRNALTNLPEN  385 (754)
T ss_pred             CEEECCCCcCCCCCHh
Confidence            8888888888888864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.13  E-value=1.7e-10  Score=130.15  Aligned_cols=145  Identities=24%  Similarity=0.257  Sum_probs=83.3

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCC-----------------CCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCc
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLL-----------------SNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG  485 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l-----------------~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g  485 (587)
                      ++.|+.|+|++|+|+. +|..+..|                 ++|+.|+|++|+++ .+|...  ++|+.|+|++|+|+ 
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~p--~~L~~LdLS~N~L~-  315 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLP--PGLQELSVSDNQLA-  315 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccccc--cccceeECCCCccc-
Confidence            3578999999999984 45422111                 23444555555555 344311  67999999999999 


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecccc----------ccceEECCCCccccccc---ccccc
Q 007860          486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVV----------YICCIRRGRNDYDFGLP---QDLMS  552 (587)
Q Consensus       486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~----------~L~~L~L~~N~l~~~~p---~~L~~  552 (587)
                      .+|...   .+|+.|++++|+|+ .+|.    +..+|+.|+|+.+          +|+.|++++|+++ .+|   .+|..
T Consensus       316 ~Lp~lp---~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~-~LP~l~~~L~~  386 (788)
T PRK15387        316 SLPALP---SELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKE  386 (788)
T ss_pred             cCCCCc---ccccccccccCccc-cccc----cccccceEecCCCccCCCCCCCcccceehhhccccc-cCcccccccce
Confidence            466522   23555566666665 3443    1224555555522          2344556666665 233   34566


Q ss_pred             ccccccccCCC----CCCcEEEccCCCCCCCCC
Q 007860          553 LSAKRNRYQRQ----KSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       553 L~l~~N~i~~l----~~L~~L~Ls~N~l~~~P~  581 (587)
                      |++++|+|..+    .+|+.|++++|+|+++|.
T Consensus       387 LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~  419 (788)
T PRK15387        387 LIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM  419 (788)
T ss_pred             EEecCCcccCCCCcccCCCEEEccCCcCCCCCc
Confidence            66666666432    356666666666666664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.09  E-value=2.7e-12  Score=141.09  Aligned_cols=158  Identities=23%  Similarity=0.301  Sum_probs=127.9

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..++.+++++|+++ .+|++++.+.+|+.|+..+|+|+ .+|..+.. .+|+.|.+.+|.++ .+|+....+++|++|+|
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            46899999999999 46699999999999999999997 99999988 99999999999999 89998999999999999


Q ss_pred             cCCcCcccCchhhhhccc-CCceeecc--------------ccccceEECCCCcccc-ccc-----ccccccccccccc-
Q 007860          503 NNNLLEGRVPEELYSIGV-HGGAFDLS--------------VVYICCIRRGRNDYDF-GLP-----QDLMSLSAKRNRY-  560 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~-~L~~l~Ls--------------l~~L~~L~L~~N~l~~-~~p-----~~L~~L~l~~N~i-  560 (587)
                      ..|+|. .+|+.+..... .|+.+..+              ...|+.|+|.+|.|+. .+|     ..|+.|+|++|++ 
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            999998 68875544322 13434333              4457778888888864 234     5677888888876 


Q ss_pred             -------CCCCCCcEEEccCCCCCCCCCCCCC
Q 007860          561 -------QRQKSLMLLEMESQHAKGLPTLPLN  585 (587)
Q Consensus       561 -------~~l~~L~~L~Ls~N~l~~~P~~~~~  585 (587)
                             .+|..|++|+||+|+|+.+|+++.+
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~  428 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLTTLPDTVAN  428 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhhhhhHHHHh
Confidence                   5777888888888888888876543

>PLN03210 Resistant to P

Probab=98.97  E-value=2.5e-09  Score=128.55  Aligned_cols=158  Identities=17%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccC---------------------C
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSD---------------------N  481 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~---------------------N  481 (587)
                      +.+|+.|+|++|.....+|..+..|++|+.|++++|..-+.+|..+..++|+.|+|++                     |
T Consensus       656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n  735 (1153)
T PLN03210        656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET  735 (1153)
T ss_pred             CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence            3456777777766555677777777777777777654444566544114444444444                     4


Q ss_pred             cCCccCCccc------------------------------cCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc---
Q 007860          482 QFTGSIPDSL------------------------------TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS---  528 (587)
Q Consensus       482 ~l~g~iP~~l------------------------------~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---  528 (587)
                      .+. .+|..+                              ...++|+.|+|++|...+.+|..++.+. +|+.|+++   
T Consensus       736 ~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~  813 (1153)
T PLN03210        736 AIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCI  813 (1153)
T ss_pred             ccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCC
Confidence            433 333321                              0113566666666666656777666655 46666665   


Q ss_pred             ----------ccccceEECCCCcccccc---cccccccccccccc-------CCCCCCcEEEccC-CCCCCCCCC
Q 007860          529 ----------VVYICCIRRGRNDYDFGL---PQDLMSLSAKRNRY-------QRQKSLMLLEMES-QHAKGLPTL  582 (587)
Q Consensus       529 ----------l~~L~~L~L~~N~l~~~~---p~~L~~L~l~~N~i-------~~l~~L~~L~Ls~-N~l~~~P~~  582 (587)
                                +.+|+.|+|++|..-..+   +.+++.|+|++|.|       ..+++|+.|+|++ |+|+.+|..
T Consensus       814 ~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        814 NLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             CcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence                      345666777765432233   34667777777766       3466777777766 666666653

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.91  E-value=7.8e-10  Score=114.13  Aligned_cols=148  Identities=22%  Similarity=0.306  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCCcc----cCchhhcCC-CCCCEEEccCCCCCCCCC----CCCCC-CCccEEeccCCcCCcc----CCcc
Q 007860          425 VISQIDLGSQGLKG----YISDKISLL-SNLVNLNLSTNSLGGTLP----SGLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (587)
Q Consensus       425 ~l~~L~L~~n~l~g----~~p~~l~~l-~~L~~L~Ls~N~l~g~ip----~~~~~-~~L~~L~Ls~N~l~g~----iP~~  490 (587)
                      .++.|++++|.+++    .+...+..+ ++|+.|++++|.+++...    ..+.. .+|++|++++|.+++.    ++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            37777777777762    333445566 777777777777774322    22333 5677777777777632    3334


Q ss_pred             ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc--------ccc---cccccccccccc
Q 007860          491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF--------GLP---QDLMSLSAKRNR  559 (587)
Q Consensus       491 l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~--------~~p---~~L~~L~l~~N~  559 (587)
                      +..+++|+.|++++|.+.+.-...+......       ..+|++|++++|+++.        .++   ..|+.|++++|.
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~-------~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLAS-------LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcc-------cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            4455677777777777763322223222111       3457777888887763        122   468888888887


Q ss_pred             c------------CCCCCCcEEEccCCCCCCC
Q 007860          560 Y------------QRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       560 i------------~~l~~L~~L~Ls~N~l~~~  579 (587)
                      |            ..++.|+.+++++|+++..
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            6            2456788889988888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.85  E-value=1.5e-08  Score=122.04  Aligned_cols=154  Identities=21%  Similarity=0.224  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      .+|+.|+|++|.+. .++..+..+++|+.|+|+++...+.+|. ++. ++|+.|+|++|.....+|..++.+++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            45777888887776 5666777788888888877665556664 555 77888888777655677777777788888888


Q ss_pred             cCCcCcccCchhhhhcccCCceeecc-----------ccccceEECCCCccccccc------------------------
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLS-----------VVYICCIRRGRNDYDFGLP------------------------  547 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Ls-----------l~~L~~L~L~~N~l~~~~p------------------------  547 (587)
                      ++|...+.+|..+ .+ .+|+.|+|+           ..+|+.|+|++|.+. .+|                        
T Consensus       689 ~~c~~L~~Lp~~i-~l-~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        689 SRCENLEILPTGI-NL-KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCCCCcCccCCcC-CC-CCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhcccc
Confidence            7765444666544 22 246666665           234566666666654 333                        


Q ss_pred             ------------cccccccccccc--------cCCCCCCcEEEccCC-CCCCCCCC
Q 007860          548 ------------QDLMSLSAKRNR--------YQRQKSLMLLEMESQ-HAKGLPTL  582 (587)
Q Consensus       548 ------------~~L~~L~l~~N~--------i~~l~~L~~L~Ls~N-~l~~~P~~  582 (587)
                                  ++|+.|++++|.        +..+++|+.|+|++| +++.+|..
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence                        345555566553        245667777777764 46666653

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.80  E-value=2.7e-09  Score=110.11  Aligned_cols=148  Identities=22%  Similarity=0.241  Sum_probs=106.8

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCC---CCEEEccCCCCCCC----CCCCCCC--CCccEEeccCCcCCcc----CCc
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSN---LVNLNLSTNSLGGT----LPSGLGQ--QSLVRLDLSDNQFTGS----IPD  489 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~---L~~L~Ls~N~l~g~----ip~~~~~--~~L~~L~Ls~N~l~g~----iP~  489 (587)
                      .+.|+.|++++|.+.+..+..+..+..   |+.|++++|++++.    +...+..  ++|+.|++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            457999999999998777777776666   99999999998842    2222333  6889999999999843    344


Q ss_pred             cccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc--------c--ccccccccccccc
Q 007860          490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG--------L--PQDLMSLSAKRNR  559 (587)
Q Consensus       490 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~--------~--p~~L~~L~l~~N~  559 (587)
                      .+..+++|++|++++|.+.+.....+......       ..+|++|+|++|.+.+.        +  -+.|+.|++++|.
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-------~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKA-------NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-------CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            56677889999999999985322222221110       24677888888887531        1  1468999999998


Q ss_pred             cCC-------------CCCCcEEEccCCCCC
Q 007860          560 YQR-------------QKSLMLLEMESQHAK  577 (587)
Q Consensus       560 i~~-------------l~~L~~L~Ls~N~l~  577 (587)
                      +..             ...|+.|++++|.++
T Consensus       233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         233 LTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            742             379999999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=1.2e-09  Score=106.62  Aligned_cols=130  Identities=21%  Similarity=0.255  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      |+.+||++|.|+ .+.+++.-++.++.|++|+|.+. .+.. +.. ++|+.||||+|.++ ++-.+-..+-+.+.|.|++
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            444555555544 34444444445555555555544 2221 333 44555555555444 2222222334444444554


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                      |.+. .+ ..+.++.           +|..|++++|++. .    +..    -+.|.+++.|+.+.|.+|.|.++|+
T Consensus       362 N~iE-~L-SGL~KLY-----------SLvnLDl~~N~Ie-~----lde----V~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  362 NKIE-TL-SGLRKLY-----------SLVNLDLSSNQIE-E----LDE----VNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhHh-hh-hhhHhhh-----------hheeccccccchh-h----HHH----hcccccccHHHHHhhcCCCccccch
Confidence            4443 11 1122221           2333444444443 1    000    1234788889999999999998875

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.74  E-value=1.6e-09  Score=113.90  Aligned_cols=175  Identities=23%  Similarity=0.341  Sum_probs=124.8

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~  414 (587)
                      +-+..+++.|++. .+|.....  +.-+|..-+..+.+.++|+.+..|.++.-.....++.+-..+            -.
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~------------~l  140 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPD------------GL  140 (722)
T ss_pred             chhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCCh------------hh
Confidence            3445567888876 66655554  445666667777888899888888877654433332221111            11


Q ss_pred             ecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccC
Q 007860          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (587)
Q Consensus       415 c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~  493 (587)
                      |..       -|..|-+++|+++ .+|++++.+..|..||.+.|.+. .+|..++. .+|+.|.+..|++. .+|+++..
T Consensus       141 C~l-------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~  210 (722)
T KOG0532|consen  141 CDL-------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS  210 (722)
T ss_pred             hcC-------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC
Confidence            221       2677888888887 78888888888889999999888 88888888 88888888888888 78888885


Q ss_pred             CCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccc
Q 007860          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQ  548 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~  548 (587)
                      | .|..||++.|+++ .||-.|.++.           .|++|.|.+|+++ ..|.
T Consensus       211 L-pLi~lDfScNkis-~iPv~fr~m~-----------~Lq~l~LenNPLq-SPPA  251 (722)
T KOG0532|consen  211 L-PLIRLDFSCNKIS-YLPVDFRKMR-----------HLQVLQLENNPLQ-SPPA  251 (722)
T ss_pred             C-ceeeeecccCcee-ecchhhhhhh-----------hheeeeeccCCCC-CChH
Confidence            5 4788888888888 7888887754           3666777788877 4443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.67  E-value=2.1e-08  Score=107.07  Aligned_cols=153  Identities=27%  Similarity=0.368  Sum_probs=83.7

Q ss_pred             EEEEEcCCCCCcccCchhhcCCC-CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          426 ISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      ++.|++.+|.++ .+++....++ +|+.|++++|.+. .+|..+.. +.|+.|++++|+++ .+|...+.+++|+.|+++
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence            445555555554 3444444443 5555555555555 44444444 55555555555555 444444444555555555


Q ss_pred             CCcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccc-----cccccccccccccccc-----
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDF-----GLPQDLMSLSAKRNRY-----  560 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~-----~~p~~L~~L~l~~N~i-----  560 (587)
                      +|++. .+|..+.... .|+.+.++             +.++..+.+.+|++..     .-+.+++.|++++|++     
T Consensus       195 ~N~i~-~l~~~~~~~~-~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         195 GNKIS-DLPPEIELLS-ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             CCccc-cCchhhhhhh-hhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence            55554 4444332211 13333222             3344555566776542     2345688888888887     


Q ss_pred             -CCCCCCcEEEccCCCCCCCCCCC
Q 007860          561 -QRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       561 -~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                       ..+..++.|++++|.+...+...
T Consensus       273 ~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         273 LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccCccCEEeccCccccccchhh
Confidence             35578899999999888776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.65  E-value=2.7e-08  Score=92.89  Aligned_cols=104  Identities=27%  Similarity=0.390  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccc-cCCCCCCEEE
Q 007860          425 VISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLVL  501 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~  501 (587)
                      .++.|+|++|.|+. + +.++ .+.+|+.|+|++|.++ .++ .+.. +.|++|++++|+++ .+++.+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            57889999999983 3 3566 5889999999999999 554 5666 99999999999999 676555 4689999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD  543 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~  543 (587)
                      |++|++.. +. .+..+..        +++|+.|+|.+|+++
T Consensus        95 L~~N~I~~-l~-~l~~L~~--------l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISD-LN-ELEPLSS--------LPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---S-CC-CCGGGGG---------TT--EEE-TT-GGG
T ss_pred             CcCCcCCC-hH-HhHHHHc--------CCCcceeeccCCccc
Confidence            99999973 32 2222222        567888999999987

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.64  E-value=3.8e-08  Score=91.87  Aligned_cols=111  Identities=26%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             hcCCCCCCEEEccCCCCCCCCCCCCC-C-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccC
Q 007860          444 ISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH  521 (587)
Q Consensus       444 l~~l~~L~~L~Ls~N~l~g~ip~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~  521 (587)
                      +.+..++++|+|++|.++ .+ +.++ . .+|+.|+|++|+++ .++ .+..++.|+.|++++|.++ .+...+...   
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~---   86 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKN---   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH---
T ss_pred             cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHh---
Confidence            455667899999999998 55 3566 3 89999999999999 665 4888999999999999998 566554432   


Q ss_pred             CceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCC
Q 007860          522 GGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       522 L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~  578 (587)
                             +++|++|+|++|++..     +..+.    .+..+++|+.|+|.+|.++.
T Consensus        87 -------lp~L~~L~L~~N~I~~-----l~~l~----~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   87 -------LPNLQELYLSNNKISD-----LNELE----PLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --------TT--EEE-TTS---S-----CCCCG----GGGG-TT--EEE-TT-GGGG
T ss_pred             -------CCcCCEEECcCCcCCC-----hHHhH----HHHcCCCcceeeccCCcccc
Confidence                   3357788888898862     22221    33456677777777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=2.2e-07  Score=71.14  Aligned_cols=58  Identities=38%  Similarity=0.571  Sum_probs=35.9

Q ss_pred             CCCEEEccCCCCCCCCC-CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcC
Q 007860          449 NLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL  507 (587)
Q Consensus       449 ~L~~L~Ls~N~l~g~ip-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  507 (587)
                      +|+.|++++|+++ .+| ..+.. ++|++|++++|+++..-|..|..+++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566666666666 334 34444 6666666666666654455666677777777776654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.36  E-value=1.3e-07  Score=95.77  Aligned_cols=95  Identities=23%  Similarity=0.389  Sum_probs=73.7

Q ss_pred             EEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC-C
Q 007860          429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN-N  505 (587)
Q Consensus       429 L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~-N  505 (587)
                      .+-++-+++ .+|..+-  ..-..++|..|.|+ .||+. |.. ++|+.||||+|+|+..-|..|..+.+|..|-+.+ |
T Consensus        51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            556666666 5665442  34578999999999 66665 555 9999999999999988899999999988887776 9


Q ss_pred             cCcccCchhhhhcccCCceeecc
Q 007860          506 LLEGRVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       506 ~l~g~ip~~l~~~~~~L~~l~Ls  528 (587)
                      +|+ .+|...+.....|+.|.+.
T Consensus       127 kI~-~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen  127 KIT-DLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             chh-hhhhhHhhhHHHHHHHhcC
Confidence            998 7887666655567777666

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.3e-07  Score=97.10  Aligned_cols=149  Identities=16%  Similarity=0.153  Sum_probs=94.9

Q ss_pred             CCceeEEEEEcCCCCCcccC--chhhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCc-cCCccccCCC
Q 007860          421 ETAVVISQIDLGSQGLKGYI--SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTG-SIPDSLTSSS  495 (587)
Q Consensus       421 ~~~~~l~~L~L~~n~l~g~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g-~iP~~l~~l~  495 (587)
                      ..++.++.|||+.|-+....  -.-...|++|+.|+|+.|++.-.+......  +.|+.|.|+.+.|+. .+-..+..++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            34567899999999887533  345678999999999999998555444444  889999999999983 2333455778


Q ss_pred             CCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc--------ccccccccccccc-------
Q 007860          496 KLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP--------QDLMSLSAKRNRY-------  560 (587)
Q Consensus       496 ~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p--------~~L~~L~l~~N~i-------  560 (587)
                      +|+.|+|..|...+.-......           ++.|+.|+|++|++. .++        +.|..|.++.+.|       
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i-----------~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d  290 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKI-----------LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPD  290 (505)
T ss_pred             cHHHhhhhcccccceecchhhh-----------hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCC
Confidence            9999999988532111111111           223444555555543 111        2355555555544       


Q ss_pred             -------CCCCCCcEEEccCCCCCCCCC
Q 007860          561 -------QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       561 -------~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                             ....+|+.|++++|++...++
T Consensus       291 ~~s~~kt~~f~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  291 VESLDKTHTFPKLEYLNISENNIRDWRS  318 (505)
T ss_pred             ccchhhhcccccceeeecccCccccccc
Confidence                   345567777777777766554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.32  E-value=8.6e-08  Score=93.77  Aligned_cols=118  Identities=18%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             ccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCC
Q 007860          410 WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP  488 (587)
Q Consensus       410 ~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP  488 (587)
                      .+.+.|........+.++.|++++|.|.. + ..+..|.+|+.||||+|.++ .+..+-.. -++++|.|+.|.+. .+.
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS  368 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS  368 (490)
T ss_pred             ccchhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh
Confidence            44556655544556789999999999872 3 34888999999999999998 55444444 78899999999887 332


Q ss_pred             ccccCCCCCCEEEccCCcCcccCc--hhhhhcccCCceeeccccccceEECCCCcccc
Q 007860          489 DSLTSSSKLQLVLLNNNLLEGRVP--EELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       489 ~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                       .++.+-+|..||+++|++. .+.  ..+++           ++.|+++.|.+|++.+
T Consensus       369 -GL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~-----------LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  369 -GLRKLYSLVNLDLSSNQIE-ELDEVNHIGN-----------LPCLETLRLTGNPLAG  413 (490)
T ss_pred             -hhHhhhhheeccccccchh-hHHHhccccc-----------ccHHHHHhhcCCCccc
Confidence             4677888999999999996 232  22333           4457777888888874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.30  E-value=7e-07  Score=95.33  Aligned_cols=148  Identities=25%  Similarity=0.369  Sum_probs=110.9

Q ss_pred             EEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C-CccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860          428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q-SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (587)
Q Consensus       428 ~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~-~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  505 (587)
                      .+++..|.+. .-...+..++.++.|++.+|.++ .+|+.... . +|+.|++++|++. .+|..++.++.|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4777777764 23445667789999999999999 88888887 5 9999999999999 88878999999999999999


Q ss_pred             cCcccCchhhhhcccCCceeecc-------------ccccceEECCCCccccccc------ccccccccccccc------
Q 007860          506 LLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY------  560 (587)
Q Consensus       506 ~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i------  560 (587)
                      +++ .+|...+... .|+.|+++             ...|+.|.+++|+.. ..+      ..+..|.+.+|++      
T Consensus       174 ~l~-~l~~~~~~~~-~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~  250 (394)
T COG4886         174 DLS-DLPKLLSNLS-NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES  250 (394)
T ss_pred             hhh-hhhhhhhhhh-hhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccch
Confidence            999 7887665444 46666666             233667777777422 222      2334444566654      


Q ss_pred             -CCCCCCcEEEccCCCCCCCCC
Q 007860          561 -QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       561 -~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                       ..+..++.|++++|+++.++.
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             hccccccceecccccccccccc
Confidence             567778999999999988876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.27  E-value=4.3e-07  Score=69.53  Aligned_cols=59  Identities=34%  Similarity=0.474  Sum_probs=52.6

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcC
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF  483 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l  483 (587)
                      +|+.|++++|+++...+..|..+++|++|++++|.++..-|..+.. ++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4788999999999777789999999999999999999665667777 9999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.90  E-value=4.8e-06  Score=89.52  Aligned_cols=150  Identities=26%  Similarity=0.284  Sum_probs=94.4

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..++.|++..|.|.. +...+..+.+|+.|+|++|.|+ .+. .+.. ..|+.|++++|.++ .+. .+..+.+|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch-hcc-CCccchhhhcccC
Confidence            458889999999884 3333778899999999999998 333 2334 67999999999998 444 3666889999999


Q ss_pred             cCCcCcccCchh-hhhcccCCceeecc------------ccccceEECCCCccccccc--c--c--cccccccccccC--
Q 007860          503 NNNLLEGRVPEE-LYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP--Q--D--LMSLSAKRNRYQ--  561 (587)
Q Consensus       503 s~N~l~g~ip~~-l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p--~--~--L~~L~l~~N~i~--  561 (587)
                      ++|.+. .+... +..+. .++.+.+.            +..+..+++..|.++-.-+  .  .  |+.+.+.+|++.  
T Consensus       170 ~~n~i~-~ie~~~~~~~~-~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  170 SYNRIV-DIENDELSELI-SLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             Ccchhh-hhhhhhhhhcc-chHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence            999997 34442 22222 34444444            2233334555555542111  1  1  556666666653  


Q ss_pred             -----CCCCCcEEEccCCCCCCCC
Q 007860          562 -----RQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       562 -----~l~~L~~L~Ls~N~l~~~P  580 (587)
                           .+..+..|++.+|++..+.
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             cccccccccccccchhhccccccc
Confidence                 2455666666666655543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.81  E-value=2.3e-06  Score=74.89  Aligned_cols=89  Identities=25%  Similarity=0.408  Sum_probs=56.2

Q ss_pred             EEEEEcCCCCCcccCchhhc---CCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          426 ISQIDLGSQGLKGYISDKIS---LLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~---~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      +..++|+++.+- .+++...   ....|+..+|++|.+. ..|+.+..  +.++.|+|++|+++ .+|+++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344566666553 4444433   3344555577777776 56666655  56777777777777 677777777777777


Q ss_pred             EccCCcCcccCchhhhhc
Q 007860          501 LLNNNLLEGRVPEELYSI  518 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~  518 (587)
                      +++.|.|. ..|.-+..+
T Consensus       106 Nl~~N~l~-~~p~vi~~L  122 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPL  122 (177)
T ss_pred             ccccCccc-cchHHHHHH
Confidence            77777776 566665553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=1.9e-05  Score=55.97  Aligned_cols=40  Identities=35%  Similarity=0.563  Sum_probs=31.1

Q ss_pred             CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCc
Q 007860          471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP  512 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip  512 (587)
                      ++|++|++++|+++ .+|..+++|++|+.|++++|+++ .++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            46888888888888 67877888999999999999887 443

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=3.1e-06  Score=87.06  Aligned_cols=147  Identities=22%  Similarity=0.218  Sum_probs=99.0

Q ss_pred             ceeEEEEEcCCCCCcccCc-hhhcCCCCCCEEEccCCCCCCCCCC-CCC-C-CCccEEeccCCcCCccCCccc-cCCCCC
Q 007860          423 AVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPS-GLG-Q-QSLVRLDLSDNQFTGSIPDSL-TSSSKL  497 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~-~-~~L~~L~Ls~N~l~g~iP~~l-~~l~~L  497 (587)
                      ...|+.+.|.+........ .-...|++++.||||+|-|...-|- .+. + ++|+.|+|+.|+|.-..-... ..++.|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            4567888888887753222 3567899999999999998732221 122 3 899999999999973322221 256789


Q ss_pred             CEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc------ccccccccccccccccc---------CC
Q 007860          498 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD------FGLPQDLMSLSAKRNRY---------QR  562 (587)
Q Consensus       498 ~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~------~~~p~~L~~L~l~~N~i---------~~  562 (587)
                      +.|.|+.+.|+..   .+..+.       +..++|+.|+|..|...      ..++..|+.|+|++|.+         ..
T Consensus       200 K~L~l~~CGls~k---~V~~~~-------~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  200 KQLVLNSCGLSWK---DVQWIL-------LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             heEEeccCCCCHH---HHHHHH-------HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence            9999999999842   222221       12556677777777321      24678899999999977         45


Q ss_pred             CCCCcEEEccCCCCCCC
Q 007860          563 QKSLMLLEMESQHAKGL  579 (587)
Q Consensus       563 l~~L~~L~Ls~N~l~~~  579 (587)
                      ++.|..|+++.+.+..+
T Consensus       270 l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASI  286 (505)
T ss_pred             ccchhhhhccccCcchh
Confidence            66677777777766544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=3.1e-06  Score=74.14  Aligned_cols=115  Identities=20%  Similarity=0.310  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.++|++|.+....+..-...+.++.|+|++|.|+ .+|..+.. +.|+.|+++.|.|. ..|+.+..|.+|..|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            5888999999998544444456679999999999999 99999888 99999999999999 788888889999999999


Q ss_pred             CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccc
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSL  553 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L  553 (587)
                      +|.+. ++|-.+.-..         +.-|  .+++++.+.+.-+..++.+
T Consensus       132 ~na~~-eid~dl~~s~---------~~al--~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen  132 ENARA-EIDVDLFYSS---------LPAL--IKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             CCccc-cCcHHHhccc---------cHHH--HHhcCCcccccCccccccc
Confidence            99998 7886643221         1111  2445677776666655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.69  E-value=8e-07  Score=96.27  Aligned_cols=102  Identities=25%  Similarity=0.319  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      |...+.+.|.+. .+..++.-++.|+.|||++|+++ ... .+.. ++|++|||++|.|+ .+|..-..-.+|+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            556778888887 67778888999999999999998 333 5556 89999999999999 7886322223599999999


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      |.++. + ..+.+           +.+|+.|||+.|-+.+
T Consensus       242 N~l~t-L-~gie~-----------LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  242 NALTT-L-RGIEN-----------LKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             cHHHh-h-hhHHh-----------hhhhhccchhHhhhhc
Confidence            99872 2 22333           3346677777777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.67  E-value=3.9e-06  Score=91.09  Aligned_cols=117  Identities=26%  Similarity=0.275  Sum_probs=71.2

Q ss_pred             CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeec
Q 007860          449 NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL  527 (587)
Q Consensus       449 ~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~L  527 (587)
                      .|...+.+.|.|. ....++.. +.|+.|||++|+++ .+- .+..|++|++|||+.|.+. .+|. +...         
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~---------  230 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQ-LSMV---------  230 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccc-cchh---------
Confidence            3455556666665 45555555 66777777777776 333 5666777777777777776 3442 1111         


Q ss_pred             cccccceEECCCCcccc----ccccccccccccccccC---------CCCCCcEEEccCCCCCCCC
Q 007860          528 SVVYICCIRRGRNDYDF----GLPQDLMSLSAKRNRYQ---------RQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       528 sl~~L~~L~L~~N~l~~----~~p~~L~~L~l~~N~i~---------~l~~L~~L~Ls~N~l~~~P  580 (587)
                       -.+|+.|.|++|.++.    +-.++|..||+++|-|.         .+..|..|+|.+|.|-..|
T Consensus       231 -gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  231 -GCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             -hhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence             2335566777777652    11256777888888763         3345566788888776655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.58  E-value=3e-05  Score=77.93  Aligned_cols=151  Identities=18%  Similarity=0.187  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCCcccCchh----hcCCCCCCEEEccCCCCCCC-------------CCCCCCC-CCccEEeccCCcCCcc
Q 007860          425 VISQIDLGSQGLKGYISDK----ISLLSNLVNLNLSTNSLGGT-------------LPSGLGQ-QSLVRLDLSDNQFTGS  486 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~----l~~l~~L~~L~Ls~N~l~g~-------------ip~~~~~-~~L~~L~Ls~N~l~g~  486 (587)
                      +|+.|+||.|.|...-++.    +..+..|++|.|.+|-+.-.             .-.-.+. +.|+++...+|++...
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            4777888888776433333    45567777777777776511             0111233 6677777777776511


Q ss_pred             ----CCccccCCCCCCEEEccCCcCc--cc--CchhhhhcccCCceeecc------------------ccccceEECCCC
Q 007860          487 ----IPDSLTSSSKLQLVLLNNNLLE--GR--VPEELYSIGVHGGAFDLS------------------VVYICCIRRGRN  540 (587)
Q Consensus       487 ----iP~~l~~l~~L~~L~Ls~N~l~--g~--ip~~l~~~~~~L~~l~Ls------------------l~~L~~L~L~~N  540 (587)
                          +-..+...+.|+.+.++.|.+.  |.  +-..+..+. +|+.|||.                  +++|+.|+++.+
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence                1122334456666666666553  11  001222222 45555555                  556777788777


Q ss_pred             cccc-----------cccccccccccccccc------------CCCCCCcEEEccCCCC
Q 007860          541 DYDF-----------GLPQDLMSLSAKRNRY------------QRQKSLMLLEMESQHA  576 (587)
Q Consensus       541 ~l~~-----------~~p~~L~~L~l~~N~i------------~~l~~L~~L~Ls~N~l  576 (587)
                      .++.           ..-+.|+.|.+.+|.|            ...+.|.+|+|+.|++
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            7652           1124577788888876            4577888889999888

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.50  E-value=1.4e-05  Score=85.83  Aligned_cols=149  Identities=24%  Similarity=0.279  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .+..+.++.|.+.. +-..+..+++|+.|++..|.|. .+...+.. ++|++|++++|+|+ .+. .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheec
Confidence            35556688888763 4455889999999999999999 55554666 99999999999999 443 36778889999999


Q ss_pred             CCcCcccCchhhhhcccCCceeeccc--------------cccceEECCCCccccc----cccccccccccccccCCCCC
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSV--------------VYICCIRRGRNDYDFG----LPQDLMSLSAKRNRYQRQKS  565 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl--------------~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i~~l~~  565 (587)
                      +|.++ .+.. +..+ ..|+.++++.              .+|+.+.+++|.+.-.    ....+..+++..|++..+..
T Consensus       149 ~N~i~-~~~~-~~~l-~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  149 GNLIS-DISG-LESL-KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             cCcch-hccC-Cccc-hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC
Confidence            99998 3432 2222 2344444441              1233344444444310    00122233455566633332


Q ss_pred             --------CcEEEccCCCCCCCC
Q 007860          566 --------LMLLEMESQHAKGLP  580 (587)
Q Consensus       566 --------L~~L~Ls~N~l~~~P  580 (587)
                              |+.+++++|++...|
T Consensus       226 l~~~~~~~L~~l~l~~n~i~~~~  248 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRISRSP  248 (414)
T ss_pred             cccchhHHHHHHhcccCcccccc
Confidence                    667788888877653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.46  E-value=2e-05  Score=79.19  Aligned_cols=84  Identities=30%  Similarity=0.369  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCCcc----cCchhhcCCCCCCEEEccCC---CCCCCCCCCC-------CC-CCccEEeccCCcCCccCCc
Q 007860          425 VISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTN---SLGGTLPSGL-------GQ-QSLVRLDLSDNQFTGSIPD  489 (587)
Q Consensus       425 ~l~~L~L~~n~l~g----~~p~~l~~l~~L~~L~Ls~N---~l~g~ip~~~-------~~-~~L~~L~Ls~N~l~g~iP~  489 (587)
                      .++.|+|++|.+.-    .+...+.+.+.|+..++|.-   ++...+|+.+       .. ++|++||||.|-|.-.-++
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            36778888888762    34455667777888777753   2222344432       22 5788888888888754444


Q ss_pred             c----ccCCCCCCEEEccCCcCc
Q 007860          490 S----LTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       490 ~----l~~l~~L~~L~Ls~N~l~  508 (587)
                      .    +.++..|++|.|.+|-+.
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCC
Confidence            3    346678888888888775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.00011  Score=72.36  Aligned_cols=80  Identities=25%  Similarity=0.278  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCCcc--cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc-CCccccCCCCCCEEE
Q 007860          426 ISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS-IPDSLTSSSKLQLVL  501 (587)
Q Consensus       426 l~~L~L~~n~l~g--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~  501 (587)
                      ++.|||.+|.|+.  .+-.-+.+|+.|+.|+|+.|.+...|-..-.. .+|+.|-|.+..+... .-..+..+++++.|+
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            4445555555542  22233445555666666666555333222122 5555555555555422 222234455555555


Q ss_pred             ccCC
Q 007860          502 LNNN  505 (587)
Q Consensus       502 Ls~N  505 (587)
                      ++.|
T Consensus       153 mS~N  156 (418)
T KOG2982|consen  153 MSDN  156 (418)
T ss_pred             hccc
Confidence            5555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.28  E-value=0.00014  Score=51.51  Aligned_cols=35  Identities=31%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG  461 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~  461 (587)
                      |++|++++|+|+ .+|+.+++|++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            555666666666 34555666666666666666665

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.12  E-value=0.00023  Score=82.61  Aligned_cols=103  Identities=26%  Similarity=0.262  Sum_probs=77.8

Q ss_pred             eeEEEEEcCCCC--CcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          424 VVISQIDLGSQG--LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       424 ~~l~~L~L~~n~--l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      +.++.|-+..|.  +.-...+.|..|+.|+.||||+|.=-+.+|..++. -+|++|+|++..+. .+|..+++|++|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            357777788875  44344455778888999999987777788888888 88889999988888 888888888888889


Q ss_pred             EccCCcCcccCchhhhhcccCCceeecc
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls  528 (587)
                      ++..+.-...+|.-...+. +|++|.+.
T Consensus       624 nl~~~~~l~~~~~i~~~L~-~Lr~L~l~  650 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQ-SLRVLRLP  650 (889)
T ss_pred             ccccccccccccchhhhcc-cccEEEee
Confidence            8888776545555444444 47777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.03  E-value=0.00035  Score=68.19  Aligned_cols=18  Identities=17%  Similarity=0.148  Sum_probs=11.3

Q ss_pred             CCCCCCcEEEccCCCCCC
Q 007860          561 QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       561 ~~l~~L~~L~Ls~N~l~~  578 (587)
                      ..+.+|+.|||+.|-++-
T Consensus       211 ~y~~~LevLDlqDNtft~  228 (388)
T COG5238         211 FYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             HHhCcceeeeccccchhh
Confidence            345667777777776553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.92  E-value=0.0012  Score=61.94  Aligned_cols=77  Identities=25%  Similarity=0.370  Sum_probs=47.9

Q ss_pred             EEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc-CCCCCCEEEcc
Q 007860          427 SQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT-SSSKLQLVLLN  503 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~L~Ls  503 (587)
                      +.++|.+.++.-  ...++ -+.....+||++|.+. .++ .+.. +.|.+|.|++|+++ .|-+.+. -+++|+.|.|.
T Consensus        22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc--hhhccccccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            446677666541  11232 2346677888888876 333 3445 77888888888887 4444444 34667888888


Q ss_pred             CCcCc
Q 007860          504 NNLLE  508 (587)
Q Consensus       504 ~N~l~  508 (587)
                      +|.|.
T Consensus        97 nNsi~  101 (233)
T KOG1644|consen   97 NNSIQ  101 (233)
T ss_pred             Ccchh
Confidence            88776

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.76  E-value=0.0045  Score=65.24  Aligned_cols=121  Identities=16%  Similarity=0.282  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccC-CCCCCCCCCCCCCCCccEEeccCC-cCCccCCccccCCCCCCEEEc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQQSLVRLDLSDN-QFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      .++.|+++++.++ .+|.   -..+|+.|.+++ +.++ .+|..+. .+|+.|++++| ++. .+|.      +|+.|++
T Consensus        53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP-~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L  119 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP-EGLEKLTVCHCPEIS-GLPE------SVRSLEI  119 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh-hhhhheEccCccccc-cccc------ccceEEe
Confidence            3567888887776 3441   123588888876 4443 5665332 67888888887 454 5664      3556666


Q ss_pred             cCCcCc--ccCchhhhhcccCC-c-----eeecc-ccccceEECCCCccc---ccccccccccccccc
Q 007860          503 NNNLLE--GRVPEELYSIGVHG-G-----AFDLS-VVYICCIRRGRNDYD---FGLPQDLMSLSAKRN  558 (587)
Q Consensus       503 s~N~l~--g~ip~~l~~~~~~L-~-----~l~Ls-l~~L~~L~L~~N~l~---~~~p~~L~~L~l~~N  558 (587)
                      +.|...  +.+|..+..+.... +     .+.-. -.+|+.|.+++|...   ..+|.+|+.|.++.|
T Consensus       120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            665532  35666554432100 0     00000 135667777666543   236667777776655

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.76  E-value=0.0039  Score=65.65  Aligned_cols=118  Identities=17%  Similarity=0.252  Sum_probs=74.2

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccC-CcCCccCCccccCCCCCCEEEccCC-cCcccCchhhhhccc
Q 007860          443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNN-LLEGRVPEELYSIGV  520 (587)
Q Consensus       443 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~~~~  520 (587)
                      .+..+..++.|++++|.|+ .+|. + ..+|+.|.+++ ++++ .+|..+.  ++|+.|++++| ++. .+|..+..   
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~-L-P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe~---  116 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV-L-PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESVRS---  116 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC-C-CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccccce---
Confidence            3556788999999999988 7772 1 16799999987 4554 7787553  58999999998 554 67765433   


Q ss_pred             CCceeecc----------ccccceEECCCCc------cccccccccccccccccccC-----CCCCCcEEEccCC
Q 007860          521 HGGAFDLS----------VVYICCIRRGRND------YDFGLPQDLMSLSAKRNRYQ-----RQKSLMLLEMESQ  574 (587)
Q Consensus       521 ~L~~l~Ls----------l~~L~~L~L~~N~------l~~~~p~~L~~L~l~~N~i~-----~l~~L~~L~Ls~N  574 (587)
                          |+++          -.+|+.|.+..++      +...+|.+|+.|++++|...     -..+|+.|.++.|
T Consensus       117 ----L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        117 ----LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             ----EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence                3332          1234555553221      11135666666666665542     1235666666655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.00061  Score=67.33  Aligned_cols=131  Identities=15%  Similarity=0.117  Sum_probs=81.3

Q ss_pred             EEEEEcCCCCCcccC-chhh-cCCCCCCEEEccCCCCCCC--CCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          426 ISQIDLGSQGLKGYI-SDKI-SLLSNLVNLNLSTNSLGGT--LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       426 l~~L~L~~n~l~g~~-p~~l-~~l~~L~~L~Ls~N~l~g~--ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      ++.|-+.++.|...- -..| ...+.++.|||.+|.++..  +-.-+.+ +.|++|+|+.|.+...|-..-..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            444555555553211 1122 3567899999999999831  2222334 899999999999984433322455789999


Q ss_pred             EccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccc
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKR  557 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~  557 (587)
                      -|.+..+...--..+..-...++.|.+|.++++.+.+..|..+ ..-+.+.+|.+..
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e-~~s~~v~tlh~~~  182 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE-DWSTEVLTLHQLP  182 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc-ccchhhhhhhcCC
Confidence            9999888754333433333346677777777777777777665 3333444554333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.46  E-value=0.0015  Score=76.00  Aligned_cols=83  Identities=28%  Similarity=0.392  Sum_probs=74.4

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ++.|+.|||++|.=-+.+|..+++|-+|++|+|++..+. .+|.++.. ..|.+|++..+.-...+|..+..|.+|++|.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            457999999998877899999999999999999999999 99999999 9999999999887667777777799999999


Q ss_pred             ccCCc
Q 007860          502 LNNNL  506 (587)
Q Consensus       502 Ls~N~  506 (587)
                      +..-.
T Consensus       649 l~~s~  653 (889)
T KOG4658|consen  649 LPRSA  653 (889)
T ss_pred             eeccc
Confidence            87654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.00025  Score=69.97  Aligned_cols=147  Identities=22%  Similarity=0.217  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCCcc-cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCC-cCCc-cCCccccCCCCCCEE
Q 007860          425 VISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTG-SIPDSLTSSSKLQLV  500 (587)
Q Consensus       425 ~l~~L~L~~n~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L  500 (587)
                      +++.|||+...|+. .+-.-++.+.+|+.|.|.++++...+-..++. .+|+.|+|+.. .|+. ..---+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            48889999888763 23345677889999999999999888888888 99999999874 3441 111235678889999


Q ss_pred             EccCCcCcccCch-hhhhcccCCceeecc-----------------ccccceEECCCCc-ccc-------cccccccccc
Q 007860          501 LLNNNLLEGRVPE-ELYSIGVHGGAFDLS-----------------VVYICCIRRGRND-YDF-------GLPQDLMSLS  554 (587)
Q Consensus       501 ~Ls~N~l~g~ip~-~l~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~-l~~-------~~p~~L~~L~  554 (587)
                      +|+.+.+....-. .......+|..|+|+                 .++|.+|||++|. ++.       .+ +.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-chheeee
Confidence            9998877533221 122222345555555                 6677788888763 321       11 2356666


Q ss_pred             ccccc---------cCCCCCCcEEEcc
Q 007860          555 AKRNR---------YQRQKSLMLLEME  572 (587)
Q Consensus       555 l~~N~---------i~~l~~L~~L~Ls  572 (587)
                      ++++-         +...+.|..||.-
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEec
Confidence            66652         2566667776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.00  E-value=0.0079  Score=56.58  Aligned_cols=80  Identities=29%  Similarity=0.400  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCc--cccCCCCCCEE
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV  500 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L  500 (587)
                      ....+||++|.+..  -+.|..++.|+.|.|++|+|+ .|.+.+..  ++|..|.|.+|+|. .+-+  -+..+++|+.|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            35679999999852  345778899999999999999 77777776  88999999999987 3322  26688999999


Q ss_pred             EccCCcCc
Q 007860          501 LLNNNLLE  508 (587)
Q Consensus       501 ~Ls~N~l~  508 (587)
                      .+-+|+.+
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            99999887

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.0025  Score=62.15  Aligned_cols=38  Identities=26%  Similarity=0.456  Sum_probs=16.9

Q ss_pred             CCccEEeccCC--cCCccCCccccCCCCCCEEEccCCcCc
Q 007860          471 QSLVRLDLSDN--QFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       471 ~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      ++|+.|.+|.|  +..+.++.-.-.+++|++|++++|++.
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            44444444444  333333333333345555555555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.69  E-value=0.016  Score=40.59  Aligned_cols=39  Identities=31%  Similarity=0.574  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHhcCC-C--CCCCCCCCCCCCCCCcCccceeec
Q 007860          376 PEQVIAMRALKESLRV-P--DRMGWNGDPCAPTNWDAWEGITCH  416 (587)
Q Consensus       376 p~~~~aL~~lk~~~~~-~--~~~~w~g~pc~~~~~~~~~gv~c~  416 (587)
                      ++|..+|+++|..+.. +  ...+|+...  ....|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~--~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS--DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT----S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC--CCCCeeeccEEeC
Confidence            5789999999998874 3  135897431  0011689999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.68  E-value=0.0032  Score=71.51  Aligned_cols=113  Identities=16%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             CceeEEEEEcCCCCCcc-cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCC--ccccCCCCC
Q 007860          422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKL  497 (587)
Q Consensus       422 ~~~~l~~L~L~~n~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP--~~l~~l~~L  497 (587)
                      .++.|+.|.+.+-.+.. .+..-..++++|..||+|+.+++ .+ .+++. ++|+.|.+.+=.+. ...  ..+.+|++|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKL  222 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCC
Confidence            35667778877766642 23334457788888888888877 33 45556 77777777665554 111  245677888


Q ss_pred             CEEEccCCcCccc--CchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860          498 QLVLLNNNLLEGR--VPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       498 ~~L~Ls~N~l~g~--ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      ++||+|.......  +....-++...       +++|+.||.|+..+..
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~-------LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMV-------LPELRFLDCSGTDINE  264 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhccc-------CccccEEecCCcchhH
Confidence            8888887665421  11222222111       4566667776666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.58  E-value=0.0041  Score=70.65  Aligned_cols=101  Identities=21%  Similarity=0.299  Sum_probs=67.1

Q ss_pred             eEEEEEcCCCCCc-ccCchhh-cCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          425 VISQIDLGSQGLK-GYISDKI-SLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       425 ~l~~L~L~~n~l~-g~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      +|++|++++...- ..-|..+ ..||+|+.|.+++=.+...--..++.  ++|..||+|+.+++ .+ ..+++|++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHH
Confidence            5788888886642 2233334 46699999999987775332223343  89999999999988 44 668899999999


Q ss_pred             EccCCcCcc-cCchhhhhcccCCceeecc
Q 007860          501 LLNNNLLEG-RVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       501 ~Ls~N~l~g-~ip~~l~~~~~~L~~l~Ls  528 (587)
                      .+.+=.+.. ..-..++++. +|+.||+|
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~-~L~vLDIS  228 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLK-KLRVLDIS  228 (699)
T ss_pred             hccCCCCCchhhHHHHhccc-CCCeeecc
Confidence            888766652 1123455544 35555555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.002  Score=63.85  Aligned_cols=56  Identities=25%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             CCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          449 NLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       449 ~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      .||+||||+..++..--.. +.. .+|+.|.|.++++...+-..+++-..|+.|+|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            3666666666554221111 122 5566666666666655555566666666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.83  E-value=0.028  Score=55.29  Aligned_cols=148  Identities=20%  Similarity=0.240  Sum_probs=92.7

Q ss_pred             ceeEEEEEcCCCCCcccCchh----hcCCCCCCEEEccCCCCCCCCCCCC-------------CC-CCccEEeccCCcCC
Q 007860          423 AVVISQIDLGSQGLKGYISDK----ISLLSNLVNLNLSTNSLGGTLPSGL-------------GQ-QSLVRLDLSDNQFT  484 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~----l~~l~~L~~L~Ls~N~l~g~ip~~~-------------~~-~~L~~L~Ls~N~l~  484 (587)
                      |++++.++||.|.+....|+.    ++.-+.|++|.|++|.+.-.--..+             .. +.|+......|+|.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            467999999999998777765    4566889999999998862211112             23 78999999999987


Q ss_pred             ccCCcc-----ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-ccccceEECCCCccccc--------cc--c
Q 007860          485 GSIPDS-----LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-VVYICCIRRGRNDYDFG--------LP--Q  548 (587)
Q Consensus       485 g~iP~~-----l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-l~~L~~L~L~~N~l~~~--------~p--~  548 (587)
                       .-|..     +..-..|+.+.+..|-|.   |..+.-+    -.+.+. +++|+.|+|..|-|+-.        +|  +
T Consensus       171 -ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L----~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         171 -NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTML----AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             -cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHH----HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence             33332     222257888889999886   3322211    111111 56788899999988631        11  2


Q ss_pred             cccccccccccc--------------CCCCCCcEEEccCCCCCC
Q 007860          549 DLMSLSAKRNRY--------------QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       549 ~L~~L~l~~N~i--------------~~l~~L~~L~Ls~N~l~~  578 (587)
                      .|+.|.+..+.+              -...+|+.|....|.+.+
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            245555555543              223456666666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.83  E-value=0.013  Score=34.64  Aligned_cols=19  Identities=58%  Similarity=0.777  Sum_probs=10.6

Q ss_pred             ccEEeccCCcCCccCCcccc
Q 007860          473 LVRLDLSDNQFTGSIPDSLT  492 (587)
Q Consensus       473 L~~L~Ls~N~l~g~iP~~l~  492 (587)
                      |++|||++|+|+ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555566666555 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.73  E-value=0.02  Score=55.97  Aligned_cols=95  Identities=21%  Similarity=0.219  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCC--CCCCCCCCCCCC-CCccEEeccCCcCCccCCcc---ccCCCCCCE
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS---LTSSSKLQL  499 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N--~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~  499 (587)
                      ++.|.+.+..++.  -..+-.|++|+.|.+|.|  +..+.++.-... ++|++|+|+.|++.  ++..   +..+.+|..
T Consensus        45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKS  120 (260)
T ss_pred             hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhh
Confidence            4445555555441  123456789999999999  667666665555 99999999999986  2333   456677888


Q ss_pred             EEccCCcCcccCc---hhhhhcccCCcee
Q 007860          500 VLLNNNLLEGRVP---EELYSIGVHGGAF  525 (587)
Q Consensus       500 L~Ls~N~l~g~ip---~~l~~~~~~L~~l  525 (587)
                      |++.+|.... +-   ...+.+..+|++|
T Consensus       121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~L  148 (260)
T KOG2739|consen  121 LDLFNCSVTN-LDDYREKVFLLLPSLKYL  148 (260)
T ss_pred             hhcccCCccc-cccHHHHHHHHhhhhccc
Confidence            9998887764 22   2344444444444

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=94.73  E-value=0.02  Score=56.22  Aligned_cols=122  Identities=17%  Similarity=0.150  Sum_probs=78.9

Q ss_pred             HHHHhhhhhhccCCCCCcEEEccCCCCCCcCCCCceEeeCCCceecCCcccc------c-CCCCCCCCCCceeeeeCCCC
Q 007860           14 LLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------S-EPLHFRFPHEKTLRYFPPSS   86 (587)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~cG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~-~~~~~~~~~y~t~R~f~~~~   86 (587)
                      +.+++..+.+|+-+...-+.+|||+.. .+|..|+.|-.|-. -..|.....      . ....-....|+|+|+-..  
T Consensus        44 lv~v~~ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~-~~VGrasd~G~~l~i~~raeeed~ily~ter~nee--  119 (355)
T KOG3593|consen   44 LVDVVRGAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPL-EGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE--  119 (355)
T ss_pred             eeeeeccCccccCchhhhheeccCChh-hhcccceEeecccc-ccccccCCccceeeccccCChhhhhhhhhcccchh--
Confidence            344555566666666555789999974 48888999988531 001211110      0 111112357999999654  


Q ss_pred             CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEEC-CEEEEecCCCCcccc
Q 007860           87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGL  142 (587)
Q Consensus        87 ~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~-~~~~l~~~~~~~~~~  142 (587)
                        .|.|..|++..|.|-+=+.|..--|+.. +.-.|||-+| ...+....|.+...+
T Consensus       120 --tFgyd~pik~dgdyalvlkfaevyF~~~-q~kvfdvrln~sh~vVk~ldi~~~vg  173 (355)
T KOG3593|consen  120 --TFGYDVPIKEDGDYALVLKFAEVYFKTC-QHKVFDVRLNCSHCVVKALDIFDQVG  173 (355)
T ss_pred             --hhcccccccCCCceehhhhHHHHHHHhh-hhhheeeeeccceeEEeccchhhhcC
Confidence              3789999988899998899932114432 3568999999 888888877765443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.66  E-value=0.042  Score=32.45  Aligned_cols=18  Identities=28%  Similarity=0.490  Sum_probs=9.7

Q ss_pred             CCEEEccCCcCcccCchhh
Q 007860          497 LQLVLLNNNLLEGRVPEEL  515 (587)
Q Consensus       497 L~~L~Ls~N~l~g~ip~~l  515 (587)
                      |++|+|++|+|+ .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 455543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.50  E-value=0.069  Score=29.40  Aligned_cols=16  Identities=25%  Similarity=0.515  Sum_probs=8.5

Q ss_pred             CCcEEEccCCCCCCCC
Q 007860          565 SLMLLEMESQHAKGLP  580 (587)
Q Consensus       565 ~L~~L~Ls~N~l~~~P  580 (587)
                      +|+.|+|++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5677777777777665

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.79  E-value=0.0064  Score=58.30  Aligned_cols=83  Identities=23%  Similarity=0.276  Sum_probs=74.0

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      .+++.||++.|.+. .+-..++-++.|..|+++.|.+. .+|..+++ ..+..+++..|.++ ..|.+++.++.++.+++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            46889999999986 45667888899999999999998 89999998 88999999999998 89999999999999999


Q ss_pred             cCCcCcc
Q 007860          503 NNNLLEG  509 (587)
Q Consensus       503 s~N~l~g  509 (587)
                      -+|.|..
T Consensus       119 k~~~~~~  125 (326)
T KOG0473|consen  119 KKTEFFR  125 (326)
T ss_pred             ccCcchH
Confidence            9999863

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.66  E-value=0.007  Score=59.51  Aligned_cols=84  Identities=23%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCc--cccCCCCCCEEE
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLVL  501 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~  501 (587)
                      .+..|++-+++|..+  .-..+|+.|+.|.||-|+++ .+- .+.. ++|++|+|..|.|. .+-+  .+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence            355566666666521  12346777777777777776 221 1233 66777777777665 3332  245666777777


Q ss_pred             ccCCcCcccCch
Q 007860          502 LNNNLLEGRVPE  513 (587)
Q Consensus       502 Ls~N~l~g~ip~  513 (587)
                      |..|.=.|.-+.
T Consensus        95 L~ENPCc~~ag~  106 (388)
T KOG2123|consen   95 LDENPCCGEAGQ  106 (388)
T ss_pred             hccCCcccccch
Confidence            777766665543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.96  E-value=0.2  Score=27.57  Aligned_cols=7  Identities=71%  Similarity=0.985  Sum_probs=2.5

Q ss_pred             EEeccCC
Q 007860          475 RLDLSDN  481 (587)
Q Consensus       475 ~L~Ls~N  481 (587)
                      .|+|++|
T Consensus         5 ~L~l~~n   11 (17)
T PF13504_consen    5 TLDLSNN   11 (17)
T ss_dssp             EEEETSS
T ss_pred             EEECCCC
Confidence            3333333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.95  E-value=0.22  Score=30.51  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=17.8

Q ss_pred             CCCCcEEEccCCCCCCCCCCCC
Q 007860          563 QKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       563 l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      +.+|+.|+|++|+|+.+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4578889999999999887654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.95  E-value=0.22  Score=30.51  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=17.8

Q ss_pred             CCCCcEEEccCCCCCCCCCCCC
Q 007860          563 QKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       563 l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      +.+|+.|+|++|+|+.+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4578889999999999887654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.67  E-value=0.41  Score=29.30  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=14.0

Q ss_pred             CCCCCEEEccCCcCcccCchhhh
Q 007860          494 SSKLQLVLLNNNLLEGRVPEELY  516 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~l~  516 (587)
                      +++|+.|+|++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356677777777776 5665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.67  E-value=0.41  Score=29.30  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=14.0

Q ss_pred             CCCCCEEEccCCcCcccCchhhh
Q 007860          494 SSKLQLVLLNNNLLEGRVPEELY  516 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~l~  516 (587)
                      +++|+.|+|++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356677777777776 5665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.72  E-value=0.051  Score=53.67  Aligned_cols=75  Identities=20%  Similarity=0.237  Sum_probs=58.6

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC--CCCC-CCccEEeccCCcCCccCCcc-----ccCCC
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFTGSIPDS-----LTSSS  495 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~-~~L~~L~Ls~N~l~g~iP~~-----l~~l~  495 (587)
                      +.|++|.|+-|.|+..  ..+..+++|++|+|..|.|. .+.+  .+.. ++|+.|.|..|...|.-+..     +.-|+
T Consensus        41 p~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   41 PLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             ccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            5689999999999843  33778999999999999998 3332  2445 89999999999998877753     44577


Q ss_pred             CCCEEE
Q 007860          496 KLQLVL  501 (587)
Q Consensus       496 ~L~~L~  501 (587)
                      +|++||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            888775

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.48  E-value=0.46  Score=29.25  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=16.8

Q ss_pred             CCCcEEEccCCCCCCCCCCCC
Q 007860          564 KSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       564 ~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      .+|+.|++++|+|+.+|+...
T Consensus         2 ~~L~~L~vs~N~Lt~LPeL~~   22 (26)
T smart00364        2 PSLKELNVSNNQLTSLPELXX   22 (26)
T ss_pred             cccceeecCCCccccCccccc
Confidence            367889999999999998543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.46  E-value=0.021  Score=54.93  Aligned_cols=84  Identities=23%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             chhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcc
Q 007860          441 SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG  519 (587)
Q Consensus       441 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~  519 (587)
                      -.++......+.||++.|++. .+-..+.. ..|..|+++.|++. .+|..++.+..+..+++.+|+++ ..|.+++...
T Consensus        35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~  111 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP  111 (326)
T ss_pred             hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence            356788889999999999998 55566666 88999999999998 88999999999999999999998 7888888766


Q ss_pred             cCCceeecc
Q 007860          520 VHGGAFDLS  528 (587)
Q Consensus       520 ~~L~~l~Ls  528 (587)
                      . ++.+++.
T Consensus       112 ~-~k~~e~k  119 (326)
T KOG0473|consen  112 H-PKKNEQK  119 (326)
T ss_pred             C-cchhhhc
Confidence            3 4444333

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=84.86  E-value=0.58  Score=46.24  Aligned_cols=65  Identities=31%  Similarity=0.566  Sum_probs=50.9

Q ss_pred             hHHHHHhhhccccceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEEC-Cc-cccccceecccC
Q 007860          261 PMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DK-NVTRVDIFNSVG  327 (587)
Q Consensus       261 P~~Vy~Ta~~~~~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in-~~-~l~~~di~~~~~  327 (587)
                      -...|||+|.-.-.+.|..+.+..++|.+.|-|||..  ....+..+|+|-+| +. .+..+|++...|
T Consensus       107 d~ily~ter~neetFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ldi~~~vg  173 (355)
T KOG3593|consen  107 DIILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALDIFDQVG  173 (355)
T ss_pred             hhhhhhhcccchhhhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccchhhhcC
Confidence            3468999998544466777777788999999999976  34557899999999 55 678888887666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	587
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	4e-19
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.6 bits (231), Expect = 8e-21
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 35/162 (21%)

Query: 384 ALKESLRVPDRM-GWNGD-PCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY-- 439
            +K+ L  P  +  W     C    W    G+ C  +     V    +DL    L     
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTW---LGVLCDTDTQTYRVN--NLDLSGLNLPKPYP 67

Query: 440 -------------------------ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473
                                    I   I+ L+ L  L ++  ++ G +P  L Q ++L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           V LD S N  +G++P S++S   L  +  + N + G +P+  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.8 bits (216), Expect = 6e-19
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++ +DL    L+G  S       N   ++L+ NSL   L   +G  ++L  LDL +N+  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
           G++P  LT    L  + ++ N L G +P+ 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.8 bits (216), Expect = 7e-19
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + +    + G I D +S +  LV L+ S N+L GTLP  +    +LV +    N+ +G+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 488 PDSLTSSSKLQLVL-LNNNLLEGRVPEEL 515
           PDS  S SKL   + ++ N L G++P   
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVN-LNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
             I      + G I D     S L   + +S N L G +P      +L  +DLS N   G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
                  S    Q + L  N L   + +
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR-LDLSDNQFTG 485
            +D     L G +   IS L NLV +    N + G +P   G    L   + +S N+ TG
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
            IP +  ++  L  V L+ N+LEG       S
Sbjct: 189 KIPPTF-ANLNLAFVDLSRNMLEGDASVLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + +    L G I    + L NL  ++LS N L G      G  ++  ++ L+ N     +
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
              +  S  L  + L NN + G +P+ L
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.0 bits (162), Expect = 6e-12
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
             +I L    L   +  K+ L  NL  L+L  N + GTLP GL Q + L  L++S N   
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
           G IP              NN  L G
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
           ++ +DL +  + G +   ++ L  L +LN+S N+L G +P G   Q       ++N+   
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

Query: 486 SIP 488
             P
Sbjct: 306 GSP 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 1e-19
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           + ++ L + G  G I   +S  S LV+L+LS N L GT+PS LG    L  L L  N   
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           G IP  L     L+ ++L+ N L G +P  L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 1e-19
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 376 PEQVIAMRALKESLRVPDRM-GWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLG 432
             ++  + + K+ L   + +  W+   +PC       ++G+TC  +K     V S IDL 
Sbjct: 11  YREIHQLISFKDVLPDKNLLPDWSSNKNPCT------FDGVTCRDDK-----VTS-IDLS 58

Query: 433 SQGLK---GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
           S+ L      +S  +  L+ L +L LS + + G++       SL  LDLS N  +G +  
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118

Query: 490 --SLTSSSKLQLVLLNNNLLEGRVPEEL 515
             SL S S L+ + +++N L+       
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSG 146

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.8 bits (221), Expect = 1e-18
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  + L    L G I   +  LS L +L L  N L G +P  L   ++L  L L  N  T
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           G IP  L++ + L  + L+NN L G +P+ +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 2e-18
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485
             + L    L+G I  ++  +  L  L L  N L G +PSGL    +L  + LS+N+ TG
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            IP  +     L ++ L+NN   G +P EL
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 1e-17
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + L    L G I   +S  +NL  ++LS N L G +P  +G+ ++L  L LS+N F+G+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           P  L     L  + LN NL  G +P  +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 3e-17
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 426 ISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDN 481
           +  +DL      G + + ++ L ++L+ L+LS+N+  G +   L Q    +L  L L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            FTG IP +L++ S+L  + L+ N L G +P  L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 4e-17
 Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           + +    + G +   +S   NL  L++S+N+    +P      +L  LD+S N+ +G   
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240

Query: 489 DSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            ++++ ++L+L+ +++N   G +P   
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 5e-17
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  +D+    L GYI  +I  +  L  LNL  N + G++P  +G  + L  LDLS N+  
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
           G IP ++++ + L  + L+NN L G +PE
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 1e-16
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
            +  ++ S+   G+ S       +++ L++S N L G +P  +G    L  L+L  N  +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
           GSIPD +     L ++ L++N L+GR+P+ + ++
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +D+ S      I   +   S L +L++S N L G     +     L  L++S NQF G I
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           P        LQ + L  N   G +P+ L
Sbjct: 264 PPL--PLKSLQYLSLAENKFTGEIPDFL 289

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 429 IDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
           + L      G I D +S     L  L+LS N   G +P   G    L  L LS N F+G 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 487 IP-DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528
           +P D+L     L+++ L+ N   G +PE L ++       DLS
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 4e-16
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGS 486
           +++ S    G I      L +L  L+L+ N   G +P  L     +L  LDLS N F G+
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
           +P    S S L+ + L++N   G +P +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMD 337

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGS 486
           +DL      G +       S L +L LS+N+  G LP   L + + L  LDLS N+F+G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 487 IPDSLTS-SSKLQLVLLNNNLLEGRVPEEL 515
           +P+SLT+ S+ L  + L++N   G +   L
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 429 IDLGSQGLKGYISDKISL---LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
           +DL +  + G       L      L +L +S N + G +       +L  LD+S N F+ 
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVSSNNFST 214

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            IP  L   S LQ + ++ N L G     +
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAI 243

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494
            +G  S++++ LS     N+++   GG          S++ LD+S N  +G IP  + S 
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
             L ++ L +N + G +P+E+
Sbjct: 656 PYLFILNLGHNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 2e-13
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 429 IDLGSQGLKGYISDKISL--LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFT 484
           +DL    L G ++   SL   S L  LN+S+N+L        G +  SL  LDLS N  +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 485 GSIPDSLT---SSSKLQLVLLNNNLLEGRVP 512
           G+            +L+ + ++ N + G V 
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           + L +    G I  ++    +L+ L+L+TN   GT+P+ + +QS     ++ N   G   
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGKRY 575

Query: 489 DSLTSSSKLQLVLLNNNLLE--GRVPEELYSI 518
             + +    +      NLLE  G   E+L  +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 11/84 (13%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +LG   + G I D++  L  L  L+LS+N L G +P  +     L  +DLS+N  +G IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 489 DS-----LTSSSKLQLVLLNNNLL 507
           +         +       LNN  L
Sbjct: 722 EMGQFETFPPAK-----FLNNPGL 740

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score = 84.2 bits (208), Expect = 4e-19
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 25/159 (15%)

Query: 220 DDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279
           D  G  ++ D         S                  N     LYQT   +  +  Y++
Sbjct: 19  DVHGIHYRKDPLEGRVGRASDYGM-------KLPILRSNPEDQVLYQTERYNEDSFGYDI 71

Query: 280 AVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDIFNSVGSFAAYSWHYVA 338
            +  + +Y++   FAE+     ++ Q+VFD+ VN   V + +DIF+ VG   A+      
Sbjct: 72  PIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPI 129

Query: 339 KNLSSTELTVKLVPVVGA--------------ALISGLE 363
            ++   +L+V+                       +  L 
Sbjct: 130 -SIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALF 167

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 30/164 (18%), Positives = 48/164 (29%), Gaps = 16/164 (9%)

Query: 32  YRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHE------KTLRYFPPS 85
           + ++ G   S  D     ++ D      G  S     L     +       +T RY   S
Sbjct: 8   WAVNAGG-ESHVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNEDS 66

Query: 86  SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD 145
            G    Y IP    G Y +      + Y  +S    FDV V G  V      +       
Sbjct: 67  FG----YDIPIKEEGEYVLV-LKFAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHST 121

Query: 146 GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDA 189
                +   +K G+L +              L V+ +     + 
Sbjct: 122 AHDEIIPISIKKGKLSVQGEVSTFT----GKLSVEFVKGYYDNP 161

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 23/153 (15%)

Query: 380 IAMRALKESLRVPDRMGWNGDPC-APTNWD---------AWEGITCHPNKDETAVVISQI 429
           +A++ + ++L   +     G       NW+         A  G++ + N     V    +
Sbjct: 33  LALKEIWDALNGKN-WSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN---GRVT--GL 86

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFT 484
            L   G  G + D I  L+ L  L L ++          P G+    S  +       + 
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 485 GSIPDSLT--SSSKLQLVLLNNNLLEGRVPEEL 515
            +  D       S L    +N++  +  + +  
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 9/113 (7%), Positives = 32/113 (28%), Gaps = 23/113 (20%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           + +  + S   +  I     +      +   +N++   +   + +   L +  + ++ F 
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 485 GSIPDSLTSSSKLQ--------------------LVLLNNNLLEGRVPEELYS 517
                    +   +                    + + N   L  ++P  L +
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 444 ISLLSNLVNLNLSTNSLGG-------TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS 495
              +S +  ++ S N +G         L     +  ++  ++LS+NQ +    +  ++ S
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 496 KLQLVLLNNNLLEGRVPEELYSI 518
            L  + L  N+L       L   
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDE 480

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSL---------GGTLPSGLGQQSLVRL 476
           ++ +++ +      +   +  L  +  +N++ N              L      + +  +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 477 DLSDNQF-TGSIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
            +  N   T  +  SL    KL ++    N LEG++P 
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-------TLPSGLGQ-QSLVRLDL 478
           S I+L +  +  +  +  S  S L ++NL  N L                    L  +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 479 SDNQFTGSIPDSLTSSS--KLQLVLLNNNLLEGRVPEEL 515
             N+ T  + D   +++   L  + L+ N      P + 
Sbjct: 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           +   +  +  L  L    N L G LP+  G    L  L+L+ NQ T    +    + +++
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 499 LVLLNNNLLEGRVPEEL 515
            +   +N L+  +P   
Sbjct: 381 NLSFAHNKLKY-IPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL------DLSDNQFTGSIPDSLTSSSKLQL 499
           L  LV ++LS NS     P+      +L         D   N+     P+ +T    L  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 500 VLLNNNLLEGRVPEELYS 517
           + + +N +   V E++  
Sbjct: 571 LQIGSNDIRK-VNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG- 485
           +I          +        N+ ++NLS N +             L  ++L  N  T  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 486 ------SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                    ++  ++  L  + L  N L   + ++ 
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSS--KLQL 499
                 L +LNL+ N +   +P+      + +  L  + N+    IP+   + S   +  
Sbjct: 349 FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406

Query: 500 VLLNNNLLEGRVPEELYSI 518
           +  + N +     +    +
Sbjct: 407 IDFSYNEIGSVDGKNFDPL 425

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGS 486
           +Q D           + I+L  +L  L + +N +   +   +   ++  LD+ DN     
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITP-NISVLDIKDNPNISI 602

Query: 487 IPDSLTSSSKLQLVLLNNN 505
               +    +  + +L  +
Sbjct: 603 DLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 452 NLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLNNNLLEG 509
           N N   +  G      L     +  L L     +G +PD++   ++L+ L L ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 510 RVPEELYSIG 519
                   I 
Sbjct: 121 ERLFGPKGIS 130

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 8e-11
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQQSLVRLDLSDNQFTG 485
           +DL   GL          L NL  L LS N +              SL +L+LS NQ   
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
             P    +  +L  + LNN  L   + E+L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 1/100 (1%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            L      G     +  LS+L  LNL +N               L  +DL  N       
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 489 DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528
               +   L+ + L  NL+     +       +    D+ 
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           ++L    +    SD  S L +L  L+L  N +G  L      G +++  + LS N++   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 487 IPDSLTSSSKLQLVLLNNNLLEG 509
             +S      LQ ++L    L+ 
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494
           L        +  +NL  L+L +NS+     +   + ++L+ LDLS N  + +   +    
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 495 SKLQLVLLNNNLLEGRVPEELYS 517
             LQ +LL+NN ++    EEL  
Sbjct: 145 ENLQELLLSNNKIQALKSEELDI 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 429 IDLGSQGLKGYISDKISL---LSNLVNLNLSTNSLGGTLPS---GLGQQSLVRLDLSDNQ 482
           + L +  L   +++K+ L    +++ NL+LS + L  T  +   GL   +L  LDLS N 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 483 FTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
                 DS     +L+   L  N ++      L+ 
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTG 485
           I L          +  +L+ +L  L L   +L    + PS     ++L  LDLS+N    
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 486 SIPDSLTSSSKLQLVLLNNNLLE 508
              D L    KL+++ L +N L 
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            L +N+  LNL+ N L     +   +   L  LD+  N  +   P+       L+++ L 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 504 NNLLEGRVPEEL 515
           +N L     +  
Sbjct: 82  HNELSQLSDKTF 93

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-----LPSGLGQQSLVRLDLSDNQF 483
           +++    + G  S+  + L NL  L+LS +              L    L  L+L+ N+ 
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512
           +    D+ +    L+++ L  N +   + 
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++++ L S  ++   ++      NL+ L+LS N L  T      Q ++L  L LS+N+  
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 485 GSIPDSLT--SSSKLQLVLLNNNLLEGRVPEELYSI 518
               + L   ++S L+ + L++N ++   P   ++I
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 426 ISQIDLGSQGLKGYISDKISLL--SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ 482
           I  + L +  L    +     L  +NL  L+LS N+L             L    L  N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 483 FTGSIPDSLTSSSKLQLVLLNNNLLEG 509
                  SL     ++ + L  +  + 
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           I+ ++L    L+   +   +  S L +L++  N++    P    +   L  L+L  N+ +
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                +    + L  + L +N ++ 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           ++L S G      +    L  L  ++L  N+L     S      SL  L+L  N  T   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 488 PDSLTSS-SKLQLVLLNNNLLEG 509
                 +   L  + +  N  + 
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 429 IDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG- 485
           +DLG   +   ++ +    L N+  + LS N       +      SL RL L        
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 486 -SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            S P        L ++ L+NN +     + L
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDML 500

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG----------LGQQSLVRLDL 478
             L    ++   S  +  L N+  LNL  +    ++                + L  L++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 479 SDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR 510
            DN   G   +  T    L+ + L+N+    R
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 429 IDLGSQGLKGYISDKISLLSN--LVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485
           + L +  ++   S+++ + +N  L  L LS+N +    P        L  L L++ Q   
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 486 SIPDSLTSS---SKLQLVLLNNNLLEG 509
           S+ + L      + ++ + L+N+ L  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 10/100 (10%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG----------QQSLVR 475
           ++ +DL    L    +D  + L  L    L  N++       L           ++S  +
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
             +S          S      L+ + + +N + G      
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT--------GSIPDSLTSSSKL 497
           L NL  L+LS N++       L   + L  LDL  N           G     L   S L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 498 QLVLLNNNLLEG 509
            ++ L +N  + 
Sbjct: 539 HILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFT 484
            ++  +    L          L  L +LN+  N + G   +   G  +L  L LS++  +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 485 GSIPDSLT----SSSKLQLVLLNNNLLEGRVPEEL 515
                + T    + S L ++ L  N +     +  
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS 486
           IDLG   L    +   +   +L +LNL  N +        G   ++L  LD+  N F  +
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRV 511
                   + +     N   L    
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHY 649

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +L S  L     D+   LS+L ++ +    L   LP  + Q   L  L L+ N    ++P
Sbjct: 87  ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 489 DSLTSSSKLQ-LVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528
            S+ S ++L+ L +     L   +PE L S    G    L 
Sbjct: 144 ASIASLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLV 183

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500
                 + L  L L   S   TLP  + +   L +LDL        +P  +       ++
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 501 LLNNNLLEGRVPEELYSIG 519
           L+  +L          +  
Sbjct: 307 LVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSSKLQ-LV 500
           I  L  L  L+L   +     P   G    L RL L D +    ++P  +   ++L+ L 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLD 283

Query: 501 LLNNNLLEGRVPEEL 515
           L     L  R+P  +
Sbjct: 284 LRGCVNLS-RLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ-L 499
             I+ L NL +L +  + L   L   +     L  LDL       + P      + L+ L
Sbjct: 200 ASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 500 VLLNNNLLEGRVPEEL 515
           +L + + L   +P ++
Sbjct: 259 ILKDCSNLL-TLPLDI 273

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS--- 495
           + D +   + L  L L+ N L   LP+ +     L  L +        +P+ L S+    
Sbjct: 119 LPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 496 ------KLQLVLLNNNLLEGRVPEEL 515
                  LQ + L    +   +P  +
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASI 202

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ----------QSLVRLDLSDNQFTGSIPDSLTS 493
           I+ L+ L  L++        LP  L             +L  L L       S+P S+ +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 494 SSKLQLVLLNNNLLEGRVPEEL 515
              L+ + + N+ L   +   +
Sbjct: 205 LQNLKSLKIRNSPLSA-LGPAI 225

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 442 DKISLLSNLVNLNLSTNSLGG--TLPSGLGQ---QSLVRLDLSDNQFTGSIPDSLTSSSK 496
                 +N  N  + T +          L        V L+L         PD     S 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105

Query: 497 LQLVLLNNNLLEGRVPEEL 515
           LQ + ++   L   +P+ +
Sbjct: 106 LQHMTIDAAGLM-ELPDTM 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 71/527 (13%), Positives = 141/527 (26%), Gaps = 193/527 (36%)

Query: 148 YSDLF-----AFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYG 202
           Y D+      AFV +   D C         +++  E+  I         I +   +    
Sbjct: 18  YKDILSVFEDAFVDN--FD-CKDVQDMPKSILSKEEIDHI---------IMSKDAVSGTL 65

Query: 203 RL-----TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKS--VTTRERITNTNQ 255
           RL     +         F  +       +            S +    +  R+R+ N NQ
Sbjct: 66  RLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 256 P-PNYY-----PMKLYQTAI----VSSGAIQYN--------LAVDAKLDYLI-------- 289
               Y      P    + A+     +   +           +A+D  L Y +        
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 290 -WFHFAEIDSS-------------------------------------------VTKAGQ 305
            W +    +S                                             +K  +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 306 RVFDIL--VNDKNVTRVDIFN------------SVGSFAAYSWHYVAKNLSSTELTVKLV 351
               +L  V +      + FN             V  F + +      ++S    ++ L 
Sbjct: 245 NCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAA---TTTHISLDHHSMTLT 299

Query: 352 PVVGAALISGLENYALVP-NDLSTVPEQ-------VIAMRALKESLRV-PDRMGWNGDPC 402
           P    +L   L  Y      DL   P +        +++  + ES+R             
Sbjct: 300 PDEVKSL---LLKYLDCRPQDL---PREVLTTNPRRLSI--IAESIRDGLAT-------- 343

Query: 403 APTNWDAWEGITCHPNKDETAVVISQ-ID-LGSQGLKGYISDKISLLSNLVNLNLSTNSL 460
               WD W+    H N D+   +I   ++ L     +    D++S+     +        
Sbjct: 344 ----WDNWK----HVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAH-------- 386

Query: 461 GGTLPSGLGQQSLVRL-DLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519
              +P+ L    L  +           + + L   S          L+E +  E   SI 
Sbjct: 387 ---IPTIL----LSLIWFDVIKSDVMVVVNKLHKYS----------LVEKQPKESTISI- 428

Query: 520 VHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSL 566
                 +L         + + + ++ L + ++      + Y   K+ 
Sbjct: 429 -PSIYLEL---------KVKLENEYALHRSIV------DHYNIPKTF 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 74/549 (13%), Positives = 153/549 (27%), Gaps = 174/549 (31%)

Query: 17  VLPLSLASSYPYKA--SYRI------DCGSATSTTDPFNTTWQADDRYYTSGATSIVSEP 68
            + L +  SY  +    ++I      +C S  +  +         D  +TS +    +  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 69  LHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDN-YDGKSHSPSFDVSVE 127
           L       + LR    S   +NC ++  L              N  +      +F++S +
Sbjct: 225 LRIHSIQAE-LRRLLKSKPYENCLLV--L-------------LNVQN-AKAWNAFNLSCK 267

Query: 128 GTLVFSWRSPWPEGLARDGAYSD---------------LFAFVKDGELDLCFYSFATDPP 172
             L+ +          R    +D                     D    L    +    P
Sbjct: 268 -ILLTT----------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRP 315

Query: 173 VIASL--EVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDA 230
               L  EV   +P     + I           +  G   W         D  +    D 
Sbjct: 316 --QDLPREVLTTNPRR--LSIIAE--------SIRDGLATW---------DNWKHVNCDK 354

Query: 231 ASRSPNAKSSIKSVTT---RER-----I--TNTNQPPN-----YYPMKLYQTAIVSSGAI 275
            +     +SS+  +     R+      +   + + P       ++ +      +V +   
Sbjct: 355 LTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 276 QYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVF-DILVNDKNVTRVDIFNSVGSFAA--Y 332
           +Y+L      +  I      ++  V    +      +V+  N+ +    + +       Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPN---DLSTVPEQVIAMRALKESL 389
            + ++  +L + E                 E   L      D           R L++ +
Sbjct: 473 FYSHIGHHLKNIEHP---------------ERMTLFRMVFLDF----------RFLEQKI 507

Query: 390 RVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSN 449
           R              T W+A   I      +     + Q+       K YI D       
Sbjct: 508 RHDS-----------TAWNASGSIL-----N----TLQQLKF----YKPYICDNDPKYER 543

Query: 450 LVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
           LV      N++   LP    +++L+    +D      +         L++ L+  +    
Sbjct: 544 LV------NAILDFLPK--IEENLICSKYTD------L---------LRIALMAED---E 577

Query: 510 RVPEELYSI 518
            + EE +  
Sbjct: 578 AIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 37/275 (13%), Positives = 82/275 (29%), Gaps = 69/275 (25%)

Query: 335 HYVAKNLSSTELTVK-LVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPD 393
           H++       +   K ++ V   A +   +       D+  +P+ +++   +   +   D
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCK-----DVQDMPKSILSKEEIDHIIMSKD 59

Query: 394 ------RMGWN-------------GDPCAPT-NWDAWEGITCHPNK--DETAVVISQIDL 431
                 R+ W               +       +     I     +    T + I Q D 
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 432 ---GSQGLKGY----ISDKISLLSNLVNLNLSTN-SLGGTLPSGLGQQSLVRLDLSDNQF 483
               +Q    Y    +   + L   L+ L  + N  + G L  G G+  +        + 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--GSGKTWVALDVCLSYKV 176

Query: 484 TGSIPD-----SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRG 538
              +       +L + +  + VL     L  ++     S                     
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--------------------- 215

Query: 539 RNDYDFGLPQDLMSLSAKRNRYQRQK----SLMLL 569
           R+D+   +   + S+ A+  R  + K     L++L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +DL    ++         LS+L  L L+ N +            SL +L   +       
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 488 PDSLTSSSKLQ-LVLLNNNLLEGRVPEEL 515
              +     L+ L + +N +   ++PE  
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 434 QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492
              + ++ D  + L NL  L+LS   L    P+      SL  L++S N F         
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528
             + LQ++  + N +     +EL          +L+
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
              +DL    L+   S        L  L+LS   +             L  L L+ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                + +  S LQ ++     L       +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPI 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS 486
           +DL   G+   +S     L  L +L+   ++L       +    ++L+ LD+S      +
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                   S L+++ +  N  +     ++
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTS 493
           ++       S LS+L  L     +L       +G  ++L  L+++ N      +P+  ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 494 SSKLQLVLLNNNLLEGRVPEELYS 517
            + L+ + L++N ++     +L  
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRV 171

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSL-GGTLPSGLGQ-QSLVRLDLSDNQFTG 485
           ++      L    +  I  L  L  LN++ N +    LP       +L  LDLS N+   
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 486 SIPDSLTSSSKLQLVLLNNNL 506
                L    ++ L+ L+ +L
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDL 184

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +L  +  NL+LS N L             L  LDLS  +       +  S S L  ++L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 504 NNLLEGRVPEEL 515
            N ++       
Sbjct: 85  GNPIQSLALGAF 96

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 429 IDLGSQGL--KGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGS 486
           +DL   GL  KG  S      ++L  L+LS N +     + LG + L  LD   +     
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 487 IPDS-LTSSSKLQLVLLNNNLLEGRVPEEL 515
              S   S   L  + +++           
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLG-----QQSLVRLDLSDNQFTGSIPDSLTSS 494
           + +  S L+NL +L+LS+N +     + L          + LDLS N      P +    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KE 199

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
            +L  + L NN     V +  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNL----VNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT 484
           +DL S  ++      + +L  +    ++L+LS N +    P    +  L +L L +N  +
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

Query: 485 GSIP-DSLTSSSKLQLVLLNNNLLEG 509
            ++    +   + L++  L       
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSL---GGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT 492
            KG  +     L +L  L+LS N L   G    S  G  SL  LDLS N     +  +  
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393

Query: 493 SSSKLQLVLLNNNLLEGRVPEEL 515
              +L+ +   ++ L+      +
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS 486
           +++         +     L++L  L+ S N +  +    L     SL  L+L+ N F  +
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 487 IP--DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRR 537
                 L      + +L+    +E   P +   + V   + +++    C + +
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL--SLNIT----CQMNK 605

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           I D  + L+N+ + +L + ++   +           L+L + +F       L S  +L  
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 500 VLLNNNLL 507
                   
Sbjct: 333 TSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQ--FTGSIPDSLTSSSKLQLVLL 502
             L +L  L  ++N  G    S +   SL  LDLS N   F G    S   ++ L+ + L
Sbjct: 322 LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 503 NNNLLEG 509
           + N +  
Sbjct: 381 SFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
             + LN         +P  L   S   LDLS N        S  S  +LQ++ L+   ++
Sbjct: 13  QCMELNFYK------IPDNLPF-STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 509 GRVPEELYS 517
                   S
Sbjct: 66  TIEDGAYQS 74

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG- 485
             +              S L +L ++ L        LP  L     L  L+++ N+    
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 486 --------SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                    + D   +  K+Q+  +  N LE   P   
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASA 567

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 440 ISDKISL--LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDL------SDNQFTGSIPDS 490
           +SD      L  L N+++S N    + P+       L    +        N+     P  
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 491 LTSSSKLQLVLLNNNLLEGRVPEEL 515
           +T+   L  + + +N +   V E+L
Sbjct: 802 ITTCPSLIQLQIGSNDIRK-VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 33/162 (20%), Positives = 49/162 (30%), Gaps = 22/162 (13%)

Query: 366 ALVPNDLSTVPEQVIAMRALKESLRVPDRMGW--NGDPC----APTNW------DAWEGI 413
           A VP  L    E +   +ALK      D   W              NW      D W   
Sbjct: 255 ANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQ 314

Query: 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSL--------GGTLP 465
                 +   V    + L   G KG + D I  L+ L  L+  T+S            L 
Sbjct: 315 PGVDLDNNGRVT--GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 466 SGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 507
             + ++   R+ +   +        L  S  LQ  +  N  +
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGG------TLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
              +  + +++ S N +G                +   + LS N+      +   + S +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 498 QLVLLNNNLLEGRVPEELYS 517
             ++L+NNL+   +PE    
Sbjct: 700 STIILSNNLMT-SIPENSLK 718

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG---------TLPSGLGQ-QSLVRLD 477
            ++L +      + D +  L  L +LN++ N              L         +    
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 478 LSDNQFTGSIPDS--LTSSSKLQLVLLNNNLLE 508
           +  N      P S  L    KL L+   +N + 
Sbjct: 555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPD--SLTSSSKLQL 499
                 L +L L  N +   +P         +  L  S N+    IP+  +  S   +  
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648

Query: 500 VLLNNNLLEGRVPEELYSIG 519
           V  + N +         S+ 
Sbjct: 649 VDFSYNKIGSEGRNISCSMD 668

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSL-TSSSKLQ 498
            S  +  +  L  L+   N +   L +      L  L L  NQ    IP+     + +++
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622

Query: 499 LVLLNNNLLEGRVPEEL 515
            +  ++N L+  +P   
Sbjct: 623 GLGFSHNKLKY-IPNIF 638

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-------GTLPSGLGQ-QSLVRLD 477
            S + L    ++ + ++  +  S +  + LS N +                    L  +D
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 478 LSDNQFTGSIPDSLTSS--SKLQLVLLNNNLLEGRVPEEL 515
           L  N+ T S+ D   ++    L  + ++ N      P + 
Sbjct: 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 21/102 (20%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-------------------TLPSGL 468
           QI   +  +   IS  I  L+ L  +  + +                             
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 469 GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
              + L  ++L +      +PD L    +LQ + +  N    
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTG 485
             +D  +        +      N  N N   +  G      L     +  L L+     G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG 545
            +PD++   ++L+++    +             G      D+S      IR         
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRL----FGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 546 LPQDLMSLSAKRNRYQRQKSLMLLEMES 573
             Q L      ++   R   +  ++ +S
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDS 421

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT-G 485
            Q D     +       I+   +L+ L + +N +   +   L    L  LD++DN     
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTP-QLYILDIADNPNISI 842

Query: 486 SIPDSLTSSSKLQLVLLNNNL 506
            +            VLL +  
Sbjct: 843 DVTSVCPYIEAGMYVLLYDKT 863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            +    L +LNL  N +   +   +    L  LDLS N+    +     S++ +  + L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 504 NNLLEGRVPEEL 515
           NN L   + + L
Sbjct: 223 NNKLV-LIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
            + L  L+LS+N L   +         +  + L +N+    I  +L  S  L+   L  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 506 LLEGRVPEELYS 517
                   + +S
Sbjct: 248 GFHCGTLRDFFS 259

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           I +     +      ++ +SL     + L Q   ++  LDLS N  +      L   +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 498 QLVLLNNNLL 507
           +L+ L++N+L
Sbjct: 61  ELLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           + +  ++  L+ + N++   +    GQ     + L++N+ T          S++Q + L 
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 504 NNLLE 508
            N ++
Sbjct: 153 LNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT-GSIPDSLTSSSK 496
           ++  +    + +  ++L  N L   +   L   Q+L   DL  N F  G++ D  + + +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 497 LQLVLLNNN 505
           +Q V     
Sbjct: 264 VQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
           DL    L    +  ++  + L  LNLS+N L           +L  LDL++N        
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYVQ----- 93

Query: 490 SLTSSSKLQLVLLNNNLLEGRVPEEL 515
            L     ++ +   NN +  RV    
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            +    LK  ++       N+  L+LS N L     + L     L  L+LS N       
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL 74

Query: 489 DSLTSSSKLQLVLLNNNLLE 508
           D L S S L+ + LNNN ++
Sbjct: 75  D-LESLSTLRTLDLNNNYVQ 93

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           K  L++    L L+  +L  +LP  L  Q +  L+++ N    S+P+   S   L+ +  
Sbjct: 54  KECLINQFSELQLNRLNL-SSLPDNLPPQ-ITVLEITQNALI-SLPELPAS---LEYLDA 107

Query: 503 NNNLLEGRVPEEL 515
            +N L   +PE  
Sbjct: 108 CDNRLS-TLPELP 119

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-----QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
            L  +L  L++STN L  +LP+   +     ++ +     +N+ T  IP+++ S      
Sbjct: 177 ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 500 VLLNNNLLEGRVPEEL 515
           ++L +N L  R+ E L
Sbjct: 235 IILEDNPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L ++L  L+   N L  TLP      SL  LD+ +NQ T  +P+       L+ +  +N
Sbjct: 97  ELPASLEYLDACDNRLS-TLPELPA--SLKHLDVDNNQLT-MLPELPAL---LEYINADN 149

Query: 505 NLLEGRVPEEL 515
           N L   +PE  
Sbjct: 150 NQLT-MLPELP 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L + L  +N   N L   LP      SL  L + +NQ T  +P+   S   L+ + ++ 
Sbjct: 137 ELPALLEYINADNNQLT-MLPELPT--SLEVLSVRNNQLT-FLPELPES---LEALDVST 189

Query: 505 NLLEGRVPEEL 515
           NLLE  +P   
Sbjct: 190 NLLE-SLPAVP 199

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 8/70 (11%), Positives = 17/70 (24%), Gaps = 2/70 (2%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
                      +      N +   +P  +        + L DN  +  I +SL+  +   
Sbjct: 199 PVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

Query: 499 LVLLNNNLLE 508
                     
Sbjct: 258 DYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGG--TLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501
            S         L   +     +L           L L+    + S+PD+L     + ++ 
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPPQ--ITVLE 86

Query: 502 LNNNLLEGRVPEEL 515
           +  N L   +PE  
Sbjct: 87  ITQNALI-SLPELP 99

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L S L  L +S N L  +LP       L+ L +  NQ T  +P+SL   S    V L  
Sbjct: 238 VLPSELKELMVSGNRLT-SLPMLPSG--LLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 505 NLLE---GRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQ 561
           N L     +   E+ S   + G   +    +      R      L      + A+     
Sbjct: 294 NPLSERTLQALREITSAPGYSG--PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 562 RQKSLMLLEME 572
                 +   E
Sbjct: 352 PADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L S L  L++S N L  +LP+   +  L +L   +N+ T S+P   +    L+ ++++ 
Sbjct: 178 MLPSGLQELSVSDNQL-ASLPTLPSE--LYKLWAYNNRLT-SLPALPSG---LKELIVSG 230

Query: 505 NLLEGRVPEEL 515
           N L   +P   
Sbjct: 231 NRLT-SLPVLP 240

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 407 WDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS 466
           W AW            A V+ ++             +  L +    LN+  + L  TLP 
Sbjct: 12  WSAWRRAAPAEESRGRAAVVQKM-------------RACLNNGNAVLNVGESGL-TTLPD 57

Query: 467 GLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            L    +  L + DN  T S+P       +L+ + ++ N L   +P   
Sbjct: 58  CLPAH-ITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLP 100

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L   L  L++S N L  +LP+   +  L +L   +NQ T S+P   +    LQ + +++
Sbjct: 138 VLPPGLQELSVSDNQL-ASLPALPSE--LCKLWAYNNQLT-SLPMLPSG---LQELSVSD 190

Query: 505 NLLEGRVPEEL 515
           N L   +P   
Sbjct: 191 NQLA-SLPTLP 200

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 10/72 (13%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +L   L  L +S N L  +LP        L            ++P  L       L +  
Sbjct: 78  ALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP-ALPSGLCK-----LWIFG 130

Query: 504 NNLLEGRVPEEL 515
           N L    +P   
Sbjct: 131 NQL--TSLPVLP 140

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           +      L  L   +     L   LPS      L +L +  NQ T S+P       +L  
Sbjct: 96  LPVLPPGLLELSIFSNPLTHL-PALPS-----GLCKLWIFGNQLT-SLPVLPPGLQELS- 147

Query: 500 VLLNNNLLEGRVPEEL 515
            + +N L    +P   
Sbjct: 148 -VSDNQLAS--LPALP 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            +    L +LNL  N +   +   +    L  LDLS N+    +     S++ +  + L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 504 NNLLEGRVPEEL 515
           NN L   + + L
Sbjct: 223 NNKLV-LIEKAL 233

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           I +     +      ++ +SL     + L Q   ++  LDLS N  +      L   +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 498 QLVLLNNNLLEG 509
           +L+ L++N+L  
Sbjct: 61  ELLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           + +  ++  L+ + N++   +    GQ     + L++N+ T          S++Q + L 
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 504 NNLLE 508
            N ++
Sbjct: 153 LNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF-TGSIPDSLTSSSK 496
           ++  +    + +  ++L  N L   +   L   Q+L   DL  N F  G++ D  + + +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 497 LQLVLLN-NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSA 555
           +Q V       L G+  EE     +            CC      D        L++L  
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTL------GHYGAYCC-----EDLPAPFADRLIALKR 312

Query: 556 KRNRYQRQKSLMLLEMESQ 574
           K +     +      +E +
Sbjct: 313 KEHALLSGQGSETERLECE 331

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSI 487
           ++DL    L    +  ++  + L  LNLS+N L           +L  LDL++N      
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYVQ--- 93

Query: 488 PDSLTSSSKLQLVLLNNNLLE 508
              L     ++ +   NN + 
Sbjct: 94  --ELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            +    LK  ++       N+  L+LS N L     + L     L  L+LS N       
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL 74

Query: 489 DSLTSSSKLQLVLLNNNLLE 508
           D L S S L+ + LNNN ++
Sbjct: 75  D-LESLSTLRTLDLNNNYVQ 93

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           +DL    L+         L  L  LN+S N+L   L S       SL  LD S N+   S
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 487 IPDSLTSSSKLQLVLLNNNLL 507
                     L    L NN +
Sbjct: 537 KGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           +D+     K         L++L  L ++ NS      S +     +L  LDLS  Q    
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
                 +  +LQL+ +++N L   +    Y+
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLF-LDSSHYN 518

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +DL    ++         L +L NL L+ N +    P       SL  L   + +     
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 488 PDSLTSSSKLQLVLLNNNLLEG 509
              +     L+ + + +N +  
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           +S     L  L +L+   ++L            + L+ LD+S               + L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 498 QLVLLNNNLLEGRVPEEL 515
             + +  N  +      +
Sbjct: 451 NTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 3/101 (2%)

Query: 430 DLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
            +     K      + +  +NL  L+LS   L             L  L++S N      
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528
                    L  +  + N +E      L         F+L+
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            S L  L+LS   +   +      G   L  L L+ N      P S +  + L+ ++   
Sbjct: 55  FSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 505 NLLEG 509
             L  
Sbjct: 114 TKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQLVLLNN 504
           L++L NL      L       +GQ  +L +L+++ N      +P   ++ + L  V L+ 
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 505 NLLEG 509
           N ++ 
Sbjct: 163 NYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTG 485
            +      L    S  I  L  L  LN++ N +    LP+      +LV +DLS N    
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 486 SIPDSLTSSSKLQLVLLNNNL 506
              + L    +   V L+ ++
Sbjct: 168 ITVNDLQFLRENPQVNLSLDM 188

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSS-SKLQLVLLN 503
                 ++L++S N +            L  L L  N  + +I  +   + + L +  L 
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 504 NNLLEGRVPEELYSIGVHGGAFDLSV 529
               +     E++   +  G  D+++
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTI 263

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT--SSSKLQLVLLNN 504
           L  L +L L+ N         +   SL  LDLS N  + S   S +   ++ L+ + L+ 
Sbjct: 327 LPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 505 NLLE 508
           N   
Sbjct: 386 NGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVLLNNN 505
            ++L +L+LS N       + +G + L  LD   +        S   S  KL  + ++  
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 506 LLEGRVPEEL 515
             +       
Sbjct: 435 NTKIDFDGIF 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 437 KGYISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQQSLVRLDLSDNQFTGSIPDSLTS 493
           KG IS K   L +L  L+LS N+L  +     S LG  SL  LDLS N     +  +   
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 494 SSKLQLVLLNNNLLEG 509
             +LQ +   ++ L+ 
Sbjct: 398 LEELQHLDFQHSTLKR 413

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 441 SDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500
             K   L+N+  ++L+  S+   L           L +   Q        L     L+ +
Sbjct: 278 IVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSL 333

Query: 501 LLNNNLLE 508
            L  N   
Sbjct: 334 TLTMNKGS 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
            L    L        + L  + +++LS N L  +    L     + L+L+ N  +  +P 
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541

Query: 490 SLTSSSKLQLVLLNNNLLEG 509
            L   S+ + + L  N L+ 
Sbjct: 542 LLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ----QSLVRLDLSDNQFT 484
           ++L    L          L  L +LNL  N                  L  L LS    +
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                + TS   +  V L++N L  
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTG 485
            ++L         ++       L  L+L+   L              L  L+LS +    
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519
           S          LQ + L  N       ++  S+ 
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  I+L         S+     S L  L+L+   L   LPSGL    +L +L LS N+F 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
                S ++   L  + +  N     +   
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
              L +L      +       L   ++L  L L  N  +         + KL+++   NN
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 506 LLEGRVPEEL 515
            +     E++
Sbjct: 164 AIHYLSKEDM 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISL--LSNLVNLNLSTNSL---GGTLPSG 467
           I         + V   ++ G       I   +    + +L                +  G
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 468 LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY 516
           L + S+  ++L  + F     ++    S LQ + L    L   +P  L 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +L ++   L  S N L     +   +  +L  LDL+  Q      D+  S  +L  ++L 
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 504 NNLLEG 509
            N L  
Sbjct: 90  ANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFT 484
              ++     L    +   S L NL  L+L+   +          Q  L  L L+ N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                +L+    L+ +      +  
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQQSLVRLDLSDNQFTG 485
           + LGS  +      K      L  L+   N++        S L Q + + L+L+ N    
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA- 192

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            I      S+  Q +          + + L
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQQSLVRLDLSDNQFTGSIP 488
                G+       +     L +L L +N +    LP G   + L  LD  +N       
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 489 DSLTSSSKLQLVLL--NNNLLEG 509
           + ++S  +   + L  N N + G
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL---GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           L NL  L+LS + +  +    L       L  L+LS N+      ++     +L+L+ L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 504 NNLLEGRVPEELYS 517
              L+ +  +  + 
Sbjct: 409 FTRLKVKDAQSPFQ 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           I     L  +L  LN+S N L   LP+      L RL  S N     +P+   +   L+ 
Sbjct: 309 IRSLCDLPPSLEELNVSNNKL-IELPALPP--RLERLIASFNHLA-EVPELPQN---LKQ 361

Query: 500 VLLNNNLLEGRVPEELYSI 518
           + +  N L    P+   S+
Sbjct: 362 LHVEYNPLR-EFPDIPESV 379

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +   S L  +++  NSL   LP      SL  +   +NQ    +P+ L +   L  +  +
Sbjct: 149 LQNSSFLKIIDVDNNSL-KKLPDLPP--SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYAD 203

Query: 504 NNLLEGRVPEELYS 517
           NN L+ ++P+   S
Sbjct: 204 NNSLK-KLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L  NL  LN S+N +  +L       SL  L++S+N+    +P       +L+ ++ + 
Sbjct: 294 ELPPNLYYLNASSNEI-RSLCDLPP--SLEELNVSNNKLI-ELPALPP---RLERLIASF 346

Query: 505 NLLEGRVPEEL 515
           N L   VPE  
Sbjct: 347 NHLA-EVPELP 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L  NL  L++ TN L    P      S+  L ++  +       +  ++ KL+  +  +
Sbjct: 393 ELPQNLKQLHVETNPLR-EFPDIPE--SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 505 NLL 507
           +  
Sbjct: 450 HHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L   L  L +S N L   LP       L  +D+ +N     +PD   S   L+ +   N
Sbjct: 128 DLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGN 182

Query: 505 NLLE 508
           N LE
Sbjct: 183 NQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +  L  L  +    NSL   LP      SL  +   +N         L +   L  +  +
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPL--SLESIVAGNNILE--ELPELQNLPFLTTIYAD 245

Query: 504 NNLLEGRVPEEL 515
           NNLL+  +P+  
Sbjct: 246 NNLLK-TLPDLP 256

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 21/93 (22%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--------------QSLVRLDLSDNQFTG 485
           +  +   + +      + +      P G G+              +    L+L++   + 
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84

Query: 486 SIPDSLTSSSKLQ-LVLLNNNLLEGRVPEELYS 517
           S+P+       L+ LV   N+L E  +PE   S
Sbjct: 85  SLPELPPH---LESLVASCNSLTE--LPELPQS 112

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           +  L      L L+   L  +LP       L  L  S N  T  +P+   S   L +   
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 503 NNNLLEGRVPEELYSIGVHG 522
           N   L   +P  L  +GV  
Sbjct: 122 NLKALSD-LPPLLEYLGVSN 140

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           +     L  +L ++    N L       L     L  +   +N    ++PD   S   L+
Sbjct: 207 LKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LE 260

Query: 499 LVLLNNNLLEGRVPEELYSI 518
            + + +N L   +PE   S+
Sbjct: 261 ALNVRDNYLT-DLPELPQSL 279

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           + +    L +L+  N +  +L   LP       L  L +S+NQ    +P+ L +SS L++
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSD-LPP-----LLEYLGVSNNQLE-KLPE-LQNSSFLKI 157

Query: 500 VLLNNNLLEGRVPEEL 515
           + ++NN L+ ++P+  
Sbjct: 158 IDVDNNSLK-KLPDLP 172

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
              L  ++LS N +   L      G +SL  L L  N+ T  +P    + L     LQL+
Sbjct: 55  YKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLF---SLQLL 109

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
           LLN N +   +            AF 
Sbjct: 110 LLNANKIN-CLRV---------DAFQ 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +L +L L  N +   LP  L  G  SL  L L+ N+    +       L     L L+
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLH---NLNLL 133

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L +N L+  + +         G F 
Sbjct: 134 SLYDNKLQ-TIAK---------GTFS 149

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L +L  L L+ N +   L         +L  L L DN+       + +    +Q + L  
Sbjct: 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 505 N 505
           N
Sbjct: 162 N 162

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSI 487
           + G +   G  S   +    L  L+LS NSL     +        L  L+LS       +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268

Query: 488 PDSLTSSSKLQLVLLNNNLLEG 509
           P  L   +KL ++ L+ N L+ 
Sbjct: 269 PKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGS 486
            L + L  L+LS N L    PS      +  L L  N F  S
Sbjct: 271 GLPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           +  L+ L  LN+ +N +  +  S L     L  L L++NQ      + +   + L  + L
Sbjct: 261 VKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 503 NNNLLEG 509
           + N +  
Sbjct: 319 SQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ LS L +L L+ N LG      +G   +L  L LS N  T   P  L S SK+     
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340

Query: 503 NNNLLE 508
            N +++
Sbjct: 341 ANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ LS L  L + TN +  +  + +     L  L++  NQ +      L + S+L  + L
Sbjct: 239 LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 503 NNNLLEGRVPEEL 515
           NNN L     E +
Sbjct: 295 NNNQLGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 9e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           +S L  L NL + TN +  T  S L    +L  L L+++  +   P  L + +K+  + L
Sbjct: 84  LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139

Query: 503 NNNLLEGRVPEEL 515
             N         L
Sbjct: 140 GANHNLS-DLSPL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           I+++ +  + +   I   I  L+NL  LNL+ N +     S L     L  L +  N+ T
Sbjct: 46  ITKLVVAGEKVAS-IQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT 101

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                +L + + L+ + LN + +  
Sbjct: 102 --DISALQNLTNLRELYLNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +LG+      +S  +S ++ L  L ++ + +     + +     L  L L+ NQ     P
Sbjct: 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP 194

Query: 489 DSLTSSSKLQLVLLNNNLLEG 509
             L S + L       N +  
Sbjct: 195 --LASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L++L       N +  T  + +     L  L + +N+ T   P  L + S+L  + +
Sbjct: 195 LASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250

Query: 503 NNNLLEG 509
             N +  
Sbjct: 251 GTNQISD 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           +S     L  L +L+   ++L       +    ++L+ LD+S      +        S L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 498 QLVLLNNNLLEGRVPEEL 515
           +++ +  N  +     ++
Sbjct: 448 EVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           LS+L  L ++ NS        +    ++L  LDLS  Q     P +  S S LQ++ + +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 505 NLLEGRVPEELYS 517
           N L+  VP+ ++ 
Sbjct: 504 NQLK-SVPDGIFD 515

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           +DL    ++         LS+L  L L+ N +  +L  G   G  SL +L   +      
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL 115

Query: 487 IPDSLTSSSKLQLVLLNNNLL 507
               +     L+ + + +NL+
Sbjct: 116 ENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQF 483
              +DL    L+   S        L  L+LS   +  T+  G       L  L L+ N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 484 TGSIPDSLTSSSKLQLVLLNNNLLE 508
                 + +  S LQ ++     L 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT--GSIPDSLTSSSKLQLVLLNN 504
           L +L  L  ++N  G    S +   SL  LDLS N  +  G    S   ++ L+ + L+ 
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 505 NLL 507
           N +
Sbjct: 383 NGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 430 DLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
            +     +      I + L NL  L+LS   L   L         SL  L+++ NQ    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 487 IPDSLTSSSKLQLVLLNNN 505
                   + LQ + L+ N
Sbjct: 510 PDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFT-GSIPDSLTSSSKLQLVLLN 503
           LS+L  L     +L  +L +      ++L  L+++ N      +P+  ++ + L+ + L+
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 504 NNLLEGRVPEELYS 517
           +N ++     +L  
Sbjct: 158 SNKIQSIYCTDLRV 171

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGS 486
           +      L    +  I  L  L  LN++ N +    LP       +L  LDLS N+    
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 487 IPDSLTSSSKLQLVLLNNNL 506
               L    ++ L+ L+ +L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDL 184

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 447 LSNLVNLNLSTNSL---GGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           L +L  L+LS N L   G    S  G  SL  LDLS N    ++  +     +L+ +   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 504 NNLLE 508
           ++ L+
Sbjct: 405 HSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLG-----QQSLVRLDLSDNQFTGSIPDSLTSS 494
           + +  S L+NL +L+LS+N +     + L          + LDLS N     I       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
            +L  + L NN     V +  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTC 220

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 18/86 (20%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +L  L +   + G  + +   +   SL+ L L  NQF   +     + L     L+++
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLA---NLEVL 108

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L    L+           + G  F 
Sbjct: 109 TLTQCNLD--------GAVLSGNFFK 126

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  L+LS N +   L      G  +L  L L  NQ   S+P    D LTS   LQ +
Sbjct: 346 LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTS---LQKI 400

Query: 501 LLNNN 505
            L+ N
Sbjct: 401 WLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
            ++L  L L+ N +   +      G   L++L+LS N    SI     ++L    KL+++
Sbjct: 298 FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLD---KLEVL 352

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L+ N +            +   +F 
Sbjct: 353 DLSYNHIR----------ALGDQSFL 368

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L++L  L L  N++    P+      +    LDL+ N+   SI      +        L 
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR 186

Query: 501 LLNNNLL 507
           L +  L 
Sbjct: 187 LSSITLQ 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 15/83 (18%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L+NL +L LS N L   + S       +L  LDLS N    ++     +    L+++LL 
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 504 NNLLEGRVPEELYSIGVHGGAFD 526
           NN +   V            AF+
Sbjct: 121 NNHIV-VVDR---------NAFE 133

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  L L  N +   +          L +L LS NQ +   P           KL L+
Sbjct: 111 LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL 168

Query: 501 LLNNNLLE 508
            L++N L+
Sbjct: 169 DLSSNKLK 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           +  L  L +S N L   L        +L  LDLS N     +  +     +L+ + L++N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 506 LLE 508
            + 
Sbjct: 335 SIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 391 VPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNL 450
           V  +  +N  P  P          C  +  +   V   + +  Q    Y   +   L+N 
Sbjct: 1   VGGQQRYNVKPRQP-------EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQ 53

Query: 451 VNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
             +    +++   LP+ L    + +  L+L+D Q       +   +  +Q + +  N + 
Sbjct: 54  KIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 509 GRVPEEL 515
             +P  +
Sbjct: 113 -YLPPHV 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVLLN 503
           +  L  L L  N L  +LP G+      L  L +S+N     I D    +++ LQ + L+
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179

Query: 504 NNLLE 508
           +N L 
Sbjct: 180 SNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            +   L  L L  N+L       L    LV +DLS N+    +        +L+ + ++N
Sbjct: 229 PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 505 NLLE 508
           N L 
Sbjct: 288 NRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              +  LNL+   +   + +       ++ +L +  N      P    +   L +++L  
Sbjct: 74  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 505 NLLE 508
           N L 
Sbjct: 133 NDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              L  L++S N+L   +         SL  L LS N+ T  +  SL  S  L    ++ 
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSY 201

Query: 505 NLLE 508
           NLL 
Sbjct: 202 NLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           ++     +  L  L+LS N L   +     Q   L  L L  N    ++  S   + K  
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK-N 349

Query: 499 LVLLNNNL 506
           L L +N+ 
Sbjct: 350 LTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
            +++   +  L+ S NS+   +   +    L  L L  N  T      L +   L  V L
Sbjct: 206 TLAIPIAVEELDASHNSI-NVVRGPV-NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDL 261

Query: 503 NNNLLE 508
           + N LE
Sbjct: 262 SYNELE 267

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           + +L  L++S NS+      G     +SL+ L++S N  T +I   L    +++++ L++
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430

Query: 505 NLLE 508
           N ++
Sbjct: 431 NKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
             +L++LN+S+N L  T+   L  + +  LDL  N+   SIP  +     LQ + + +N 
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLPPR-IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455

Query: 507 LEGRVPEELYSIGVHGGAFD 526
           L+  VP+         G FD
Sbjct: 456 LK-SVPD---------GIFD 465

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           ++ S  L   I     L   +  L+L +N +  ++P  + + ++L  L+++ NQ   S+P
Sbjct: 405 NMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

Query: 489 D-SLTSSSKLQLVLLNNN 505
           D      + LQ + L+ N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           +  L  L +S N L   L        +L  LDLS N     +  +     +L+ + L++N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 506 LLE 508
            + 
Sbjct: 329 SIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--G 469
              C  +  +   V   + +  Q    Y   +   L+N   +    +++   LP+ L   
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDS 67

Query: 470 QQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            + +  L+L+D Q       +   +  +Q + +  N +   +P  +
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
              +  L +  N++   LP  + Q    L  L L  N  + S+P     ++ KL  + ++
Sbjct: 92  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149

Query: 504 NNLLEGRVPEEL 515
           NN LE R+ ++ 
Sbjct: 150 NNNLE-RIEDDT 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            +   L  L L  N+L       L    LV +DLS N+    +        +L+ + ++N
Sbjct: 223 PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 505 NLLE 508
           N L 
Sbjct: 282 NRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           +  L  L L  N L  +LP G+      L  L +S+N       D+  +++ LQ + L++
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 505 NLLE 508
           N L 
Sbjct: 175 NRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              L  L++S N+L   +         SL  L LS N+ T  +  SL  S  L    ++ 
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSY 195

Query: 505 NLLE 508
           NLL 
Sbjct: 196 NLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              +  LNL+   +   + +       ++ +L +  N      P    +   L +++L  
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 505 NLLEGRVPEEL 515
           N L   +P  +
Sbjct: 127 NDLS-SLPRGI 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           ++     +  L  L+LS N L   +     Q   L  L L  N    ++  S   + K  
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK-N 343

Query: 499 LVLLNNNL 506
           L L +N+ 
Sbjct: 344 LTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
            +++   +  L+ S NS+   +   +    L  L L  N  T      L +   L  V L
Sbjct: 200 TLAIPIAVEELDASHNSI-NVVRGPV-NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDL 255

Query: 503 NNNLLE 508
           + N LE
Sbjct: 256 SYNELE 261

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVL 501
           IS LSNL  L +    +       L    SL  LD+S +    SI   + +  K+  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 502 LNNNLL 507
             N  +
Sbjct: 144 SYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           I    N+ +L ++      T  + +    +L RL +     T     +L+  + L L+ +
Sbjct: 62  IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 503 NNNLLEGRVPEEL 515
           +++  +  +  ++
Sbjct: 120 SHSAHDDSILTKI 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 12/78 (15%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + +  + +       +S L++L  L++S ++   ++ + +     +  +DLS N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 488 PDSLTSSSKLQLVLLNNN 505
              L +  +L+ + +  +
Sbjct: 153 -MPLKTLPELKSLNIQFD 169

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
            S +  + L++N L   +   +  G +SL  L L  N+ T  +       L+    ++L+
Sbjct: 80  ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS---SVRLL 134

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L +N +   V           GAFD
Sbjct: 135 SLYDNQIT-TVAP---------GAFD 150

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  +N S N +   +  G   G   +  + L+ N+   ++       L     L+ +
Sbjct: 56  LPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLE---SLKTL 110

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
           +L +N +   V            +F 
Sbjct: 111 MLRSNRIT-CVGN---------DSFI 126

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +L  L L +N +   + +    G  S+  L L DNQ T ++     D+L S   L  +
Sbjct: 104 LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS---LSTL 158

Query: 501 LLNNN 505
            L  N
Sbjct: 159 NLLAN 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              L  L+L+ N+L   LP+GL  G ++L  L L +N    +IP     S  L    L+ 
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 505 N 505
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
            + L  LNL    L   L        L  LDLS NQ   S+P    +   L ++ ++ N 
Sbjct: 54  YTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111

Query: 507 LE 508
           L 
Sbjct: 112 LT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  L++S N L  +LP G  +    L  L L  N+   ++P           KL+ +
Sbjct: 99  LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP---KLEKL 153

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L NN L   +P          G  +
Sbjct: 154 SLANNNLT-ELPA---------GLLN 169

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           +  L  + +L+LS N L   LP  L   + L  L  SDN    ++   + +  +LQ +LL
Sbjct: 459 LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 503 NNNLLE 508
            NN L+
Sbjct: 516 CNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
            +DL    L+  +   ++ L  L  L  S N+L      G+     L  L L +N+    
Sbjct: 467 HLDLSHNRLRA-LPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQ-Q 522

Query: 487 IPD--SLTSSSKLQLVLLNNN 505
                 L S  +L L+ L  N
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGN 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLN 503
           L  L  L L +     T+         +L  LDL  ++     PD+      L  L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 504 NNLLEGRVPEEL 515
             L +  + +  
Sbjct: 107 CGLSDAVLKDGY 118

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGL------GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           S   +L  L L  N L     + L      G   L  L L+ N      P   +  + L+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 499 LVLLNNNLL 507
            + LN+N L
Sbjct: 508 GLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 429 IDLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTG 485
           ++LGSQ     I  +    L NL  L+L ++ +   L      G   L  L L     + 
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSD 111

Query: 486 SI--PDSLTSSSKLQLVLLNNNLL 507
           ++       +   L  + L+ N +
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTS--SSKLQLVLL 502
           L  L  L+LS N +             SL  +D S NQ        L       L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYI 532
             N L  RV  +            L ++ +
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L +L  LNL+ N +   +      G  +L  L+LS N        +     K+  + L  
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 505 NLL 507
           N +
Sbjct: 348 NHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           L+ L  L+L++N L   L       +L  LD+S NQ     PD   S   L ++ + +N
Sbjct: 503 LTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG---TLPSGLGQQSLVRLDLSDNQFTGS 486
              S  +    +  + L  +++      +++        +GL + S+  LDLS       
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281

Query: 487 IPDSLTSSSKLQLVLLNNNLLE 508
                 +   L+++ L  N + 
Sbjct: 282 NSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 447 LSNLVNLNLSTNSL-GGTLPSGL--GQQSLVRLDLSDNQFTG-SIPDSLTSSSKLQLVLL 502
           L +L  L L    L    L  G     ++L RLDLS NQ     +  S    + L+ +  
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 503 NNNLLE 508
           ++N + 
Sbjct: 156 SSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L NL  LNLS N LG  L S    G   +  +DL  N        +     KLQ + L +
Sbjct: 313 LDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 505 NLLE 508
           N L 
Sbjct: 372 NALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 441 SDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
            D    LS+L  L L+ N L  +LP G+     +L  L L+ N+ T  +  +   ++   
Sbjct: 473 WDVFEGLSHLQVLYLNHNYL-NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEI 530

Query: 499 LVLLNNNL 506
           L +  N L
Sbjct: 531 LDISRNQL 538

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L+ L  L L+ N L  +LP G+      L +L L  NQ   S+P    D LT   KL+ +
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT---KLKEL 136

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            LN N L+  +P          GAFD
Sbjct: 137 RLNTNQLQ-SIPA---------GAFD 152

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +LV L L  N L   +      G   +  L L +N+    I       L    +L+ +
Sbjct: 53  LPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLH---QLKTL 107

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L +N +   V           G+F+
Sbjct: 108 NLYDNQIS-CVMP---------GSFE 123

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
           +  LG   +   +S   + L  +  L      +      G+    +L +++ S+NQ T  
Sbjct: 28  KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 487 IPDSLTSSSKLQLVLLNNNLLEG 509
            P  L + +KL  +L+NNN +  
Sbjct: 84  TP--LKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
            +   +  +       + +L+NL  L+L+ N L       L    +L  LDL++NQ +  
Sbjct: 203 SLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 258

Query: 487 IPDSLTSSSKLQLVLLNNNLLEG 509
            P  L+  +KL  + L  N +  
Sbjct: 259 AP--LSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L+N+  L+   N +     + L     + +L L+D  +T +  +   + S    V  
Sbjct: 349 LANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 503 NNNLL 507
               L
Sbjct: 407 VTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L+ L NL L+ N L     S +   ++L  L L  N  +   P  ++S +KLQ +  
Sbjct: 283 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338

Query: 503 NNNLLEG 509
            NN +  
Sbjct: 339 YNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L+ L  L++S+N +  +  S L +  +L  L  ++NQ +   P  L   + L  + L
Sbjct: 173 LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 503 NNNLLEG 509
           N N L+ 
Sbjct: 229 NGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           IS L NL  L L  N++  +  S +     L RL   +N+ +     SL + + +  +  
Sbjct: 305 ISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 360

Query: 503 NNNLLEG 509
            +N +  
Sbjct: 361 GHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++ +     G+K    D +  L+NL  +N S N L  T  + L     LV + +++NQ  
Sbjct: 48  VTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIA 103

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
              P  L + + L  + L NN +  
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           ++ L+NL +L+L+ N +   L    G   L  L L  NQ +   P  L   + L  + LN
Sbjct: 239 LASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295

Query: 504 NNLLEG 509
            N LE 
Sbjct: 296 ENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 440 ISDKISL--LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
           ++D   L  L+ LV++ ++ N +     + L    +L  L L +NQ T   P  L + + 
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTN 135

Query: 497 LQLVLLNNNLLEG 509
           L  + L++N +  
Sbjct: 136 LNRLELSSNTISD 148

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 25/88 (28%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L+ L  L+LS N +  +LP G    L +  L  L L +N+   S+P    D LT   +L+
Sbjct: 51  LTQLTKLSLSQNQI-QSLPDGVFDKLTK--LTILYLHENKLQ-SLPNGVFDKLT---QLK 103

Query: 499 LVLLNNNLLEGRVPEELYSIGVHGGAFD 526
            + L+ N L+  VP+         G FD
Sbjct: 104 ELALDTNQLK-SVPD---------GIFD 121

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           LSNL  LNL+  +L   +P+      L  LDLS N  +   P S      LQ + +  + 
Sbjct: 184 LSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 507 LE 508
           ++
Sbjct: 243 IQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L  L  L+LS N L   +  G   G   L +L +  +Q      ++  +   L  + L +
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 505 NLLEGRVPEELYS 517
           N L   +P +L++
Sbjct: 265 NNLT-LLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L +L  L LS N +  T+  G   G  +L  L+L DN+ T +IP  +    SKL+ + L 
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144

Query: 504 NNLLE 508
           NN +E
Sbjct: 145 NNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQ-LVLL 502
           L+NL  L L  N L  T+P+G       L  L L +N    SIP  +      L+ L L 
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG 168

Query: 503 NNNLLE 508
               L 
Sbjct: 169 ELKRLS 174

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
            + D       +  LNLS+  +   + + +  Q+L  LD+S+N    S    L     LQ
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGI-RVVKTCI-PQTLEVLDVSNNNLD-SFSLFLPR---LQ 454

Query: 499 LVLLNNNLLE 508
            + ++ N L+
Sbjct: 455 ELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           L  L  L +S N L  TLP       L+ + +S NQ            + LQ + L+ N
Sbjct: 450 LPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           L NL +L++S N+    +P      + +  L+LS       +   +  +  L+++ ++NN
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNN 441

Query: 506 LLEGRVPEELYS 517
            L+      L  
Sbjct: 442 NLD-SFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501
           +   +NL  L L ++ +  T+         SL  LDLSDN  +          S L+ + 
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 502 LNNNLL 507
           L  N  
Sbjct: 105 LMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQF 483
           I ++ +    L   +S   SLL  +  + +  + +   +P    Q   SL  LDLS+N  
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346

Query: 484 TGSIPDSLTSSSKLQ----LVLLNNNL 506
                 +            LVL  N+L
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTG-SIPDSLTSSSKLQ-LVLL 502
           L +L +L+LS N L  +L S       SL  L+L  N +    +     + + LQ L + 
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 503 NNNLL 507
           N    
Sbjct: 132 NVETF 136

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG--LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L+NL  L +        +      G  SL  L++           SL S   +  + L+ 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 505 NLLE 508
           +   
Sbjct: 182 SESA 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD 489
           G+   + ++ D  + L NL  L+LS   L   L         SL  L++S N F      
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 490 SLTSSSKLQLVLLNNNLLEGRVPEEL 515
                + LQ++  + N +     ++ 
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSI-PDSLTSSSKLQLVLLN 503
           L NL+ L++S         +G+  G  SL  L ++ N F  +  PD  T    L  + L+
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 504 NNLLEGRVPEEL 515
              LE ++    
Sbjct: 184 QCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 447 LSNLVNLNLSTNSLG-GTLPSG--LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           L+ L  L+LS+N L      S    G  SL  LDLS N    ++  +     +L+ +   
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109

Query: 504 NNLLEGRVPEE 514
           ++ L+ ++ E 
Sbjct: 110 HSNLK-QMSEF 119

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           L NL  LNL   ++   +P+      L  L++S N F    P S    S L+ + + N+ 
Sbjct: 195 LFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 507 LEGRVPEELYSIGVHGGAFD 526
           +            +   AFD
Sbjct: 254 VS----------LIERNAFD 263

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L  L  L +S N     +  G   G  SL +L + ++Q +    ++    + L  + L +
Sbjct: 217 LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 505 NLLEGRVPEELYS 517
           N L   +P +L++
Sbjct: 276 NNLS-SLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L +L  L L  NS+   +  G   G  SL  L+L DN  T  IP  +    SKL+ + L 
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLR 155

Query: 504 NNLL 507
           NN +
Sbjct: 156 NNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQ-LVLL 502
           L++L  L L  N L   +PSG       L  L L +N    SIP  +      L  L L 
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG 179

Query: 503 NNNLLE 508
               LE
Sbjct: 180 ELKKLE 185

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           LS+L  L +  + +   +      G  SLV L+L+ N  + S+P D  T    L  + L+
Sbjct: 241 LSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

Query: 504 NN 505
           +N
Sbjct: 299 HN 300

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
             +L  ++LS N +  TL +        L+ L LS N+    IP    D L     L+L+
Sbjct: 53  YKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLK---SLRLL 107

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L+ N +   VPE         GAF+
Sbjct: 108 SLHGNDIS-VVPE---------GAFN 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           ++ L+ L LS N L   +P     G +SL  L L  N  +  +P    + L++   L  +
Sbjct: 77  MTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA---LSHL 131

Query: 501 LLNNN 505
            +  N
Sbjct: 132 AIGAN 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 18/84 (21%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           L+ L  L+L TN L   LPS     L    L  L +  N+ T  +P  +   + L  + L
Sbjct: 87  LTQLTVLDLGTNQLT-VLPSAVFDRLVH--LKELFMCCNKLT-ELPRGIERLTHLTHLAL 142

Query: 503 NNNLLEGRVPEELYSIGVHGGAFD 526
           + N L+  +P          GAFD
Sbjct: 143 DQNQLK-SIPH---------GAFD 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 19/118 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLNNN 505
           L  L  L +S N L   +P  L   SLV L + DN+    +P    +    +  + +  N
Sbjct: 101 LRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN 157

Query: 506 LLEGRVPEELYSIGVHGGAFD-LSVVYICCIRRGRN---DYDFGLPQDLMSLSAKRNR 559
            LE        + G   GAFD L + Y   +R            LP+ L  L    N+
Sbjct: 158 PLE--------NSGFEPGAFDGLKLNY---LRISEAKLTGIPKDLPETLNELHLDHNK 204

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            S L  L L  N +   + +G      +L  L L +N+ +  +P  L     LQ+V L+ 
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 505 NLLE 508
           N + 
Sbjct: 274 NNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 446 LLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFT-GSIPDSLTSSSKLQLVLL 502
           L S+LV L +  N +   +P G+  G +++  +++  N               KL  + +
Sbjct: 121 LPSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 503 NNNLLEGRVPEEL 515
           +   L   +P++L
Sbjct: 180 SEAKLT-GIPKDL 191

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 45/354 (12%), Positives = 101/354 (28%), Gaps = 44/354 (12%)

Query: 187 YDAATIGNNHILVNYGRL-TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT 245
           +     G + I VNYG+L T G  Q          +F  + +++ A+    A+ + K   
Sbjct: 16  WSIDVRGTDVI-VNYGKLGTDGQTQ--------VKNFSSAGEAEKAAGKLIAEKTKKGYV 66

Query: 246 TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQ 305
                             L          +   +  D KL  L                 
Sbjct: 67  ETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSD 126

Query: 306 RVFDILVNDK---NVTRVDIFNSVGSFAAYSWHYVA---------KNLSSTELTVKLVPV 353
               I+ N +   +   +   +        SW               L++ ++       
Sbjct: 127 IADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186

Query: 354 VGAALISGLENYALVPNDLSTVPEQVIAMRALK--ESLRVPDRMGWNGDPCAPTNWDAWE 411
           +G      L++  ++   L     + I    L   E L +   +   G       +    
Sbjct: 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246

Query: 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKIS---LLSNLVNLNLSTNSLGGT----L 464
                PN       +  + +     +  + +      +L  L  +++S   L       L
Sbjct: 247 SKDRFPN-------LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299

Query: 465 PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
              + + + L  +++  N  +  +   L  S       +  ++ + +  ++ YS
Sbjct: 300 LDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP-----MKIDVSDSQEYDDDYS 348

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L +L  L L  N +   +          L+ L L  N  + ++P ++L     LQ + LN
Sbjct: 176 LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

Query: 504 NN 505
           +N
Sbjct: 234 DN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           L  L  L+L    L   L  GL  G  +L  L L DN    ++PD +      L  + L+
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 504 NNLLE 508
            N + 
Sbjct: 162 GNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L NL +L L  N +  ++P     G  SL RL L  N+     P +     +L  + L  
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 505 NLLEGRVPEELYS 517
           N L   +P E  +
Sbjct: 211 NNLS-ALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L+ L  L+LS N+   ++      G   L  L L        +        + LQ + L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 504 NNLL 507
           +N L
Sbjct: 138 DNAL 141

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L NL  L ++ N L   LP G+  Q  +L  L L  NQ   S+P    DSLT   KL  +
Sbjct: 84  LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT---KLTYL 138

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L  N L+  +P+         G FD
Sbjct: 139 SLGYNELQ-SLPK---------GVFD 154

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L+ L  L+L  N L  +LP G+     SL  L L +NQ    +P    D LT   +L+ +
Sbjct: 132 LTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT---ELKTL 186

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L+NN L+ RVPE         GAFD
Sbjct: 187 KLDNNQLK-RVPE---------GAFD 202

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
             +L  L L+ N +   +  G      +L  L L  N+    IP    T  S L  + ++
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 504 NNLLE 508
            N + 
Sbjct: 113 ENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLN 503
           L++L  L L   +L  ++P+        L+ L L           S     +L+ L + +
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 504 NNLLE 508
              L+
Sbjct: 210 WPYLD 214

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L  L+ L L   ++   +          L  L++S   +  ++  +      L  + + +
Sbjct: 175 LHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 505 NLLEGRVPEEL 515
             L   VP   
Sbjct: 234 CNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           LSNL  L++S N +   L   +     +L  L++ DN     I   + +  + L+ + L 
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLE 160

Query: 504 NNLLE 508
              L 
Sbjct: 161 KCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSI 487
           ++        ++       NL +L+++  +L   +P         L  L+LS N  +   
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 488 PDSLTSSSKLQLVLLNNNLLE 508
              L    +LQ + L    L 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           L NL +L +  N L   +      G  SL +L L     T SIP  +L+    L ++ L 
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184

Query: 504 NNLLE 508
           +  + 
Sbjct: 185 HLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L NL  L L +N L   +P G+  G  +L +LD+S+N+    +         L+ + + +
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 505 NLL 507
           N L
Sbjct: 138 NDL 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 25/88 (28%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L++L  LNLSTN L  +LP+G    L Q  L  L L+ NQ   S+P    D LT   +L+
Sbjct: 75  LTSLTYLNLSTNQL-QSLPNGVFDKLTQ--LKELALNTNQLQ-SLPDGVFDKLT---QLK 127

Query: 499 LVLLNNNLLEGRVPEELYSIGVHGGAFD 526
            + L  N L+  VP+         G FD
Sbjct: 128 DLRLYQNQLK-SVPD---------GVFD 145

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 21/103 (20%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSI 487
           DL +  LK   +     L++L  L L  N L  +LP+G+  +  SL  L+LS NQ   S+
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 488 P----DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 526
           P    D LT   +L+ + LN N L+  +P+         G FD
Sbjct: 92  PNGVFDKLT---QLKELALNTNQLQ-SLPD---------GVFD 121

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L+NL  L LS NS+   + +G       L  L L++N+    +P  L     +Q+V L+N
Sbjct: 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 505 NLLE 508
           N + 
Sbjct: 273 NNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSS-SKLQLVLLNNN 505
           L  L  L LS N L   LP  +  ++L  L + +N+ T  +  S+ +  +++ +V L  N
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKM-PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN 155

Query: 506 LLEGRVPEELYSIGVHGGAFD 526
            L+        S G+  GAF 
Sbjct: 156 PLK--------SSGIENGAFQ 168

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
            L  +L  L+L  N +   + +    G  +L +L LS N  +     SL ++  L+ + L
Sbjct: 189 GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 503 NNNLLEGRVPEELYS 517
           NNN L  +VP  L  
Sbjct: 248 NNNKLV-KVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 446 LLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSI--PDSLTSSSKLQLVL 501
           +   L  L +  N +   +   +  G   ++ ++L  N    S     +     KL  + 
Sbjct: 119 MPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 502 LNNNLLEGRVPEEL 515
           + +  +   +P+ L
Sbjct: 178 IADTNIT-TIPQGL 190

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L+NL  L L  N L  +LP G+  +  +L  L+L+ NQ   S+P    D LT    L  +
Sbjct: 108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLT---NLTEL 162

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFD 526
            L+ N L+  +PE         G FD
Sbjct: 163 DLSYNQLQ-SLPE---------GVFD 178

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-----GTLPSGLGQ-Q 471
                +++  +  L +  +K   +        L  + +  N +        L  GL   Q
Sbjct: 158 APPLRSIICGRNRLENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 472 SLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLL 507
            L  LDL DN FT     ++  +L S   L+ + LN+ LL
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 16/105 (15%)

Query: 418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT---LPSGLGQ---- 470
           +     +V+S   +G++  + ++S+ I+   +L     S    G     +P  L      
Sbjct: 31  DDSVKEIVLSGNTIGTEAAR-WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 471 ----QSLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLL 507
                 L  + LSDN F       + D L+  + L+ + L+NN L
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
             NL  L L++N +  T+         SL  LDLS N  + ++        S L  + L 
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL 132

Query: 504 NNLLE 508
            N  +
Sbjct: 133 GNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 441 SDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDS-LTSSSKLQL 499
           ++ +       N+ ++  SL   +        L+ L+ S NQ   S+PD      + LQ 
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 500 VLLNNN 505
           + L+ N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           L+ L  L +  + L  +         Q++  L L   Q    + +  +  +S ++ + L 
Sbjct: 173 LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 504 NNLLEGRVPEELYSI 518
           +  L+     EL + 
Sbjct: 231 DTDLDTFHFSELSTG 245

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 15/67 (22%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L NL  L  ++N L   +P+G    L Q  L +LDL+DN    SIP    D+L S   L 
Sbjct: 56  LVNLQQLYFNSNKL-TAIPTGVFDKLTQ--LTQLDLNDNHLK-SIPRGAFDNLKS---LT 108

Query: 499 LVLLNNN 505
            + L NN
Sbjct: 109 HIYLYNN 115

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
           ++ +D  +  +       I  L+ L  L  ++N++     S     +L  L    N+ T 
Sbjct: 44  LTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTLDLSQN--TNLTYLACDSNKLT- 98

Query: 486 SIPDSLTSSSKLQLVLLNNNLLE 508
           ++   +T  +KL  +  + N L 
Sbjct: 99  NLD--VTPLTKLTYLNCDTNKLT 119

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 15/67 (22%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L+ L  L+L  N L   LP+G    L Q  L +L L+DNQ   SIP    D+L S   L 
Sbjct: 53  LTQLTRLDLDNNQL-TVLPAGVFDKLTQ--LTQLSLNDNQLK-SIPRGAFDNLKS---LT 105

Query: 499 LVLLNNN 505
            + L NN
Sbjct: 106 HIWLLNN 112

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           LS L  L LS N +  +L   +    Q L  LD+S N+   +I    + S   L+ + L+
Sbjct: 75  LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMAS---LRHLDLS 129

Query: 504 NNLL 507
            N  
Sbjct: 130 FNDF 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGL------GQQSLVRLDLSDNQFTGSIPDSLTS 493
                 +  N+ +L     SL  +L S          +S++ L+LS N  TGS+   L  
Sbjct: 392 FFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP- 449

Query: 494 SSKLQLVLLNNNLLE 508
             K++++ L+NN + 
Sbjct: 450 -PKVKVLDLHNNRIM 463

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ 470
               +    V +    L     K  IS  + +   L  LNL +N LG      +  GL  
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCK-DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82

Query: 471 QS--LVRLDLSDNQFT----GSIPDSLTSSSKLQLVLLNNNLL 507
            S  + +L L +   T    G +  +L +   LQ + L++NLL
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQQ 471
            P      + +    L +   +  ++  +    +   L +S N +       L  GL   
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 472 --SLVRLDLSDNQFT----GSIPDSLTSSSKLQLVLLNNNLL 507
              L  L L     T      +   + S + L+ + L +N L
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ 470
            HP+     + I +  + ++G    +   +    +L  L+L+ N LG      L   L +
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310

Query: 471 Q--SLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLLE 508
               L  L +    FT          L  +  L  + ++NN LE
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 15/88 (17%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDNQFTGSIPDSLTSSSKLQ- 498
           K+        L ++ N    ++P    Q      + L L +N FT S+     + +KL  
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183

Query: 499 LVLLNNNLLEGRVPEELYSIGVHGGAFD 526
           + L  N  L            +   AF 
Sbjct: 184 VYLNKNKYLT----------VIDKDAFG 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
              L  L+LS   +  T+  G       L  L L+ N    S+       L+S  KL  V
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 501 LLNNNL 506
               NL
Sbjct: 109 --ETNL 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLG--GTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
             +   G I    +   NL  L+L    L     LP       L +L+LS+N+  G +  
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK---LPKLKKLELSENRIFGGLDM 89

Query: 490 SLTSSSKLQLVLLNNNLLE 508
                  L  + L+ N L+
Sbjct: 90  LAEKLPNLTHLNLSGNKLK 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	587
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.65
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.64
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.57
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.55
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.53
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.45
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.41
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.33
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.38
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.19
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.59
2w47_A	144	Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.	89.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.44
2vzp_A	127	Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS	86.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	85.23
2w3j_A	145	Carbohydrate binding module; sugar-binding protein	83.72

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.92  E-value=2.7e-25  Score=207.68  Aligned_cols=148  Identities=18%  Similarity=0.106  Sum_probs=113.5

Q ss_pred             CcEEEccCCCCCCcCCCCceEeeCCCceecCCcccc------cCCCCCCCCCCceeeeeCCCCCCCcceEeecCCCceEE
Q 007860           30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY  103 (587)
Q Consensus        30 ~~~~i~cG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~~~~~~~~~~y~t~R~f~~~~~~~~~Y~~pv~~~~~yl  103 (587)
                      ..|+||||++.. +|..+|+|.+|+.|...|.....      ......+..+|+|+|+|+..    .+|.||+.++|+|+
T Consensus         6 ~~~~INcGg~~~-~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~~----~tY~f~v~~~G~Y~   80 (174)
T 2jwp_A            6 VIWAVNAGGESH-VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNEDS----FGYDIPIKEEGEYV   80 (174)
T ss_dssp             EEEEEEETSSSE-EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCSC----EEEEEECCSCEEEE
T ss_pred             EEEEEECCCCCc-cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCCC----eEEEEEeCCCeEEE
Confidence            369999999854 56789999998654323322111      11112345689999999863    79999998889999


Q ss_pred             EEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEe-------------cCCeeEEEEeeCCCC
Q 007860          104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD  170 (587)
Q Consensus       104 vRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~-------------~~~~l~i~~~~~~~~  170 (587)
                      |||||..-.+... ..++|||++||++++++||++.+++...+++++|.+.+             .++.|.|+|.|....
T Consensus        81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~  159 (174)
T 2jwp_A           81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD  159 (174)
T ss_dssp             EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred             EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence            9999976656554 47999999999999999999776655567888887763             567899999987667


Q ss_pred             CceeeeEEeEecC
Q 007860          171 PPVIASLEVQQID  183 (587)
Q Consensus       171 ~pfIn~iEi~~l~  183 (587)
                      .||||||||++.+
T Consensus       160 ~a~inaIEI~~~~  172 (174)
T 2jwp_A          160 NPKVCALFIMKGT  172 (174)
T ss_dssp             SSSEEEEEEESSC
T ss_pred             CcEEEEEEEEeCc
Confidence            8999999999753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=2e-22  Score=206.71  Aligned_cols=198  Identities=21%  Similarity=0.353  Sum_probs=140.0

Q ss_pred             CchHHHHHHHHHHHhcCCCC-CCCCCC--CCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcc--cCchhhcCCC
Q 007860          374 TVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLLS  448 (587)
Q Consensus       374 ~~p~~~~aL~~lk~~~~~~~-~~~w~g--~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g--~~p~~l~~l~  448 (587)
                      +.++|..||+++|..+..+. ..+|..  ++|.    |.|.||.|.....  ..+++.|+|++|.+.+  .+|+.+.+++
T Consensus         3 c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~~--~~~l~~L~L~~~~l~~~~~~~~~l~~l~   76 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCCC--CceEEEEECCCCCccCCcccChhHhCCC
Confidence            67889999999999886543 247853  3442    3499999975321  1358888999888888  7888888888


Q ss_pred             CCCEEEccC-CCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceee
Q 007860          449 NLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD  526 (587)
Q Consensus       449 ~L~~L~Ls~-N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~  526 (587)
                      +|++|+|++ |.+.+.+|..++. ++|++|+|++|++++.+|..++.+++|++|+|++|++.+.+|..+..+. +|+.|+
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~  155 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEE
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeEE
Confidence            888888884 8888888887777 8888888888888877887777788888888888887777777777665 477777


Q ss_pred             cc--------------cc-ccceEECCCCccccccccc-----ccccccccccc--------CCCCCCcEEEccCCCCCC
Q 007860          527 LS--------------VV-YICCIRRGRNDYDFGLPQD-----LMSLSAKRNRY--------QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       527 Ls--------------l~-~L~~L~L~~N~l~~~~p~~-----L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~  578 (587)
                      |+              +. +|+.|+|++|++++.+|..     |+.|++++|++        ..+++|+.|+|++|++++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            76              22 5677777777776555432     44455555544        344455555555555543

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.85  E-value=5.4e-22  Score=185.22  Aligned_cols=153  Identities=20%  Similarity=0.239  Sum_probs=111.7

Q ss_pred             eeeeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeeeccccccCCCCCCCCchHHHHHhhhccccceEEE
Q 007860          199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN  278 (587)
Q Consensus       199 ~~~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~Ta~~~~~~lt~~  278 (587)
                      +++|||||||+..       .|..+|.|.+|..|.....   ...  ....+...  ....+|..||||||.+..+++|.
T Consensus         5 ~~~~~INcGg~~~-------~d~~gr~w~~D~~~~~~g~---~~~--~~~~~~~~--~~~~~~~~lY~TaR~~~~~~tY~   70 (174)
T 2jwp_A            5 KVIWAVNAGGESH-------VDVHGIHYRKDPLEGRVGR---ASD--YGMKLPIL--RSNPEDQVLYQTERYNEDSFGYD   70 (174)
T ss_dssp             HEEEEEEETSSSE-------EETTTEEECSSCSSTTCCC---CCC--CCTTSCCS--SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred             cEEEEEECCCCCc-------cCCCCCEEcCCcCcccCCc---ccc--cccceEec--ccCCCCchhhhhhccCCCCeEEE
Confidence            5789999998742       2568999999987642111   000  01111111  12337899999999987799999


Q ss_pred             EecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCc-cccccceecccCCcceeeeeeeEee------------cCCcc
Q 007860          279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE  345 (587)
Q Consensus       279 ~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di~~~~~~~~~~~~~l~~l~------------l~~n~  345 (587)
                      +++++++.|+|||||||+..  ...++|+|+|+|||+ .++++||..++|...++.+.+.+..            ..++.
T Consensus        71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~  148 (174)
T 2jwp_A           71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK  148 (174)
T ss_dssp             EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred             EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence            99998899999999999975  357899999999998 7789999887776555555443321            24568


Q ss_pred             EEEEEccc-chhhhhhccccccc
Q 007860          346 LTVKLVPV-VGAALISGLENYAL  367 (587)
Q Consensus       346 L~~~l~~~-~~s~~Ln~lei~~~  367 (587)
                      |.+.|.|. ...|++|||||++-
T Consensus       149 L~I~f~p~~~~~a~inaIEI~~~  171 (174)
T 2jwp_A          149 LSVEFVKGYYDNPKVCALFIMKG  171 (174)
T ss_dssp             EEEEEECSSSCSSSEEEEEEESS
T ss_pred             EEEEEeccCCCCcEEEEEEEEeC
Confidence            99999875 34499999999864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=2.3e-20  Score=215.00  Aligned_cols=197  Identities=19%  Similarity=0.267  Sum_probs=145.7

Q ss_pred             CchHHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCcCc------------cceeecCCCCCCceeEEEEEcCCCCCc
Q 007860          374 TVPEQVIAMRALKESLRVPDRMGWNGDP----CAPTNWDAW------------EGITCHPNKDETAVVISQIDLGSQGLK  437 (587)
Q Consensus       374 ~~p~~~~aL~~lk~~~~~~~~~~w~g~p----c~~~~~~~~------------~gv~c~~~~~~~~~~l~~L~L~~n~l~  437 (587)
                      +...|..||+++|..+..+   +|+.+.    +.|. .|.|            .||.|...     .+++.|+|+++++.
T Consensus       266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~-~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~  336 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIH-SLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAK  336 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCC-CCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCE
T ss_pred             cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCC-ccccccccccccccCcCceEecCC-----CCEEEEECccCCCC
Confidence            4567999999999998654   785432    1111 2789            99999763     36888999999999


Q ss_pred             ccCchhhcCCCCCCEEEc-cCCCCCCC-----------------------------------------------------
Q 007860          438 GYISDKISLLSNLVNLNL-STNSLGGT-----------------------------------------------------  463 (587)
Q Consensus       438 g~~p~~l~~l~~L~~L~L-s~N~l~g~-----------------------------------------------------  463 (587)
                      |.+|+.+++|++|+.|+| ++|.++|.                                                     
T Consensus       337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            999998999999999999 77755443                                                     


Q ss_pred             -----------------------CCCCCCC-CCccEEeccCCcCCc-----------------cCCcccc--CCCCCCEE
Q 007860          464 -----------------------LPSGLGQ-QSLVRLDLSDNQFTG-----------------SIPDSLT--SSSKLQLV  500 (587)
Q Consensus       464 -----------------------ip~~~~~-~~L~~L~Ls~N~l~g-----------------~iP~~l~--~l~~L~~L  500 (587)
                                             +|..++. ++|+.|+|++|+|+|                 .+|+.++  ++++|+.|
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L  496 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV  496 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence                                   6777777 888888888888887                 3888877  88888888


Q ss_pred             EccCCcCcccCchhhhhcccCCceeecccc-----------------------ccceEECCCCcccccccc--------c
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVV-----------------------YICCIRRGRNDYDFGLPQ--------D  549 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~-----------------------~L~~L~L~~N~l~~~~p~--------~  549 (587)
                      +|++|++.|.+|..++.+. +|+.|+|+.+                       +|++|+|++|+++ .+|.        +
T Consensus       497 ~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~  574 (876)
T 4ecn_A          497 ELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK  574 (876)
T ss_dssp             EEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred             ECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence            8888888888888887776 4777777622                       5777888888777 6665        3


Q ss_pred             ccccccccccc------CCCCCCcEEEccCCCCCCCCC
Q 007860          550 LMSLSAKRNRY------QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       550 L~~L~l~~N~i------~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                      |+.|+|++|+|      ..+++|+.|+|++|+|+.+|.
T Consensus       575 L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~  612 (876)
T 4ecn_A          575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPE  612 (876)
T ss_dssp             CCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCT
T ss_pred             CCEEECCCCCcccchhhcCCCcceEEECcCCccccchH
Confidence            55566777655      344556666666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=3e-20  Score=213.36  Aligned_cols=164  Identities=29%  Similarity=0.406  Sum_probs=117.7

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCC-CchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~-~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv  413 (587)
                      .++.+.+++|.+++.+|...+.  +..++.+.+..+.+. .+|..+..+..++......+               ...+.
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n---------------~l~~~  457 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN---------------MLEGE  457 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS---------------CCCSC
T ss_pred             CccEEECCCCccccccCHHHhc--CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC---------------cccCc
Confidence            4566667777777666666655  566666666666533 55555444444433221111               01100


Q ss_pred             eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc
Q 007860          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (587)
Q Consensus       414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~  492 (587)
                      .  +.....++.|+.|+|++|.+++.+|..+..+++|+.|+|++|+++|.+|..++. ++|++|+|++|+++|.+|..++
T Consensus       458 ~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  535 (768)
T 3rgz_A          458 I--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG  535 (768)
T ss_dssp             C--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             C--CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            0  001112345888999999999999999999999999999999999999998888 9999999999999999999999


Q ss_pred             CCCCCCEEEccCCcCcccCchhhhh
Q 007860          493 SSSKLQLVLLNNNLLEGRVPEELYS  517 (587)
Q Consensus       493 ~l~~L~~L~Ls~N~l~g~ip~~l~~  517 (587)
                      .+++|+.|++++|+++|.+|..++.
T Consensus       536 ~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          536 DCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             GCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             CCCCCCEEECCCCccCCcCChHHhc
Confidence            9999999999999999889887765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=3e-19  Score=200.63  Aligned_cols=196  Identities=18%  Similarity=0.276  Sum_probs=154.3

Q ss_pred             CchHHHHHHHHHHHhcCCCC----------CCCCCC-CCCCCCCCcCc---cceeecCCCCCCceeEEEEEcCCCCCccc
Q 007860          374 TVPEQVIAMRALKESLRVPD----------RMGWNG-DPCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGY  439 (587)
Q Consensus       374 ~~p~~~~aL~~lk~~~~~~~----------~~~w~g-~pc~~~~~~~~---~gv~c~~~~~~~~~~l~~L~L~~n~l~g~  439 (587)
                      ....|..||.+++..+..++          ..+|+. .+|     |.|   .||.|+..     .+++.|+|+++++.|.
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~   96 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcCC-----CCEEEEEecCcccCCc
Confidence            34578899999998865331          124643 222     789   99999754     3699999999999999


Q ss_pred             CchhhcCCCCCCEEEccCCC------------------------------------------------------------
Q 007860          440 ISDKISLLSNLVNLNLSTNS------------------------------------------------------------  459 (587)
Q Consensus       440 ~p~~l~~l~~L~~L~Ls~N~------------------------------------------------------------  459 (587)
                      +|+++++|++|+.|+|++|.                                                            
T Consensus        97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence            99999999999999999884                                                            


Q ss_pred             ------------------CCCCCCCCCCC-CCccEEeccCCcCCcc-----------------CCcccc--CCCCCCEEE
Q 007860          460 ------------------LGGTLPSGLGQ-QSLVRLDLSDNQFTGS-----------------IPDSLT--SSSKLQLVL  501 (587)
Q Consensus       460 ------------------l~g~ip~~~~~-~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L~~L~  501 (587)
                                        ++| +|+.++. ++|++|+|++|+++|.                 +|+.++  ++++|++|+
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~  255 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE  255 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence                              344 7888888 9999999999999986                 999999  999999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccc----------------------cccceEECCCCcccccccc--------ccc
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSV----------------------VYICCIRRGRNDYDFGLPQ--------DLM  551 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl----------------------~~L~~L~L~~N~l~~~~p~--------~L~  551 (587)
                      |++|++.|.+|..++.+. +|+.|+++.                      .+|++|+|++|+++ .+|.        +|+
T Consensus       256 L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          256 VYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG  333 (636)
T ss_dssp             EECCTTCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred             ecCCcCCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence            999999999999888876 477777651                      56777788888777 6665        456


Q ss_pred             cccccccccC-------CCCCCcEEEccCCCCCCCCCC
Q 007860          552 SLSAKRNRYQ-------RQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       552 ~L~l~~N~i~-------~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      .|++++|++.       .+++|+.|+|++|+++.+|..
T Consensus       334 ~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~  371 (636)
T 4eco_A          334 MLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN  371 (636)
T ss_dssp             EEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT
T ss_pred             EEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh
Confidence            6667777664       345677777777777776653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=6.5e-20  Score=187.89  Aligned_cols=154  Identities=25%  Similarity=0.352  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C-CccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q-SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~-~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      .|+.|+|++|.+++.+|..+..+++|++|+|++|.++|.+|..+.. + +|++|++++|++++.+|..++.++ |+.|++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            4778889999988888888888999999999999998888888887 5 889999999999888888888887 899999


Q ss_pred             cCCcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccccccc------cccccccccccc---
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLPQ------DLMSLSAKRNRY---  560 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p~------~L~~L~l~~N~i---  560 (587)
                      ++|++.+.+|..+..+. +|+.|+|+             +.+|++|+|++|++++.+|.      .|+.|++++|+|   
T Consensus       205 s~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          205 SRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             CSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            99998877777666655 46666665             34566666666666655552      344445555554   


Q ss_pred             ----CCCCCCcEEEccCCC-CCCCC
Q 007860          561 ----QRQKSLMLLEMESQH-AKGLP  580 (587)
Q Consensus       561 ----~~l~~L~~L~Ls~N~-l~~~P  580 (587)
                          ..+++|+.|++++|+ +.+.|
T Consensus       284 ip~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          284 IPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             CCCCccccccChHHhcCCCCccCCC
Confidence                234445555555555 44443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=4.9e-19  Score=182.61  Aligned_cols=200  Identities=17%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             CCchHHHHHHHHHHHhcCC-CCC--CCCC-CCCCCCCCCcCccceeecCCC----CCCceeEEEEEcCCCCCcccCchhh
Q 007860          373 STVPEQVIAMRALKESLRV-PDR--MGWN-GDPCAPTNWDAWEGITCHPNK----DETAVVISQIDLGSQGLKGYISDKI  444 (587)
Q Consensus       373 ~~~p~~~~aL~~lk~~~~~-~~~--~~w~-g~pc~~~~~~~~~gv~c~~~~----~~~~~~l~~L~L~~n~l~g~~p~~l  444 (587)
                      ..+.++..+|+++|..+.. +..  ..|. ...|.. ..|.|.|+.|....    .....+++.|+|++|.++ .+|+.+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~-~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCT-TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccc-cccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            4567788999999986632 211  2452 111111 22789999984200    000123445555555554 444445


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCccc-------------
Q 007860          445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR-------------  510 (587)
Q Consensus       445 ~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~-------------  510 (587)
                      ..+++|++|+|++|.++ .+|..++. ++|++|+|++|+++ .+|..++.+++|+.|+|++|++.+.             
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            55555555555555555 45554444 55555555555555 4454455555555555554444444             


Q ss_pred             -------------------CchhhhhcccCCceeecc-------------ccccceEECCCCccccccc------ccccc
Q 007860          511 -------------------VPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLP------QDLMS  552 (587)
Q Consensus       511 -------------------ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p------~~L~~  552 (587)
                                         +|..++.+. +|+.|+|+             +.+|+.|+|++|++.+.+|      +.|+.
T Consensus       179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIRSLPASIANLQ-NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             EEESTTCCEEEEEEECCCCCCGGGGGCT-TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             hccCCCCCEEECcCCCcCcchHhhcCCC-CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence                               444444443 35555554             3456666666666555544      23455


Q ss_pred             cccccccc--------CCCCCCcEEEccCCCCC
Q 007860          553 LSAKRNRY--------QRQKSLMLLEMESQHAK  577 (587)
Q Consensus       553 L~l~~N~i--------~~l~~L~~L~Ls~N~l~  577 (587)
                      |++++|.+        ..+++|+.|+|++|++.
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            55666543        45566666666665443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.77  E-value=2.1e-18  Score=198.03  Aligned_cols=194  Identities=23%  Similarity=0.324  Sum_probs=142.9

Q ss_pred             CchHHHHHHHHHHHhcCCCC-CCCCC-CCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCccc---Cch------
Q 007860          374 TVPEQVIAMRALKESLRVPD-RMGWN-GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY---ISD------  442 (587)
Q Consensus       374 ~~p~~~~aL~~lk~~~~~~~-~~~w~-g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~---~p~------  442 (587)
                      ..++|..||+++|..+..+. ..+|. +..|     |.|.||.|. .     .+++.|+|+++.+.|.   +|+      
T Consensus         9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~-----C~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~   77 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNP-----CTFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSLT   77 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG-----GGSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred             CCHHHHHHHHHHHhhCCCcccccCCCCCCCC-----cCCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhccC
Confidence            46789999999999876543 34796 4455     899999997 2     3699999999999887   554      


Q ss_pred             -----------------hhcCCCCCCEEEccCCCCCCCCCC--CCCC-CCccEEeccCCcCCccCCccc-cCCCCCCEEE
Q 007860          443 -----------------KISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLVL  501 (587)
Q Consensus       443 -----------------~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~-~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~  501 (587)
                                       .++.+++|++|+|++|.++|.+|.  .++. ++|++|+|++|++++.+|..+ .++++|++|+
T Consensus        78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence                             556667777777777777777776  6666 777777777777777776655 6677777777


Q ss_pred             ccCCcCcccCchh---hhhcccCCceeecc------------ccccceEECCCCccccccc-----ccccccccccccc-
Q 007860          502 LNNNLLEGRVPEE---LYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY-  560 (587)
Q Consensus       502 Ls~N~l~g~ip~~---l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i-  560 (587)
                      |++|++++..|..   +..+. +|+.|+++            +.+|++|+|++|++++.+|     +.|+.|++++|++ 
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCG-ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCT-TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC
T ss_pred             CCCCccCCcCChhhhhhccCC-CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC
Confidence            7777777666655   34443 57777776            5678888888888876555     4677777888876 


Q ss_pred             -------CCCCCCcEEEccCCCCCCC
Q 007860          561 -------QRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       561 -------~~l~~L~~L~Ls~N~l~~~  579 (587)
                             ..+++|+.|+|++|++++.
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~  262 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFVGP  262 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCEES
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCc
Confidence                   4678888888888888754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.73  E-value=1.1e-18  Score=196.10  Aligned_cols=217  Identities=16%  Similarity=0.210  Sum_probs=127.6

Q ss_pred             CccEEEEEcccchhhhhhcccccccccCCCCC------------------chHHHH--HHHHHHHhcCCCCCCCCCCCCC
Q 007860          343 STELTVKLVPVVGAALISGLENYALVPNDLST------------------VPEQVI--AMRALKESLRVPDRMGWNGDPC  402 (587)
Q Consensus       343 ~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~------------------~p~~~~--aL~~lk~~~~~~~~~~w~g~pc  402 (587)
                      .|++++ +|+..+.  +..++.+.+..+.+..                  +|+++.  .+..++......+  ...+   
T Consensus       192 ~n~l~~-ip~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n--~l~~---  263 (636)
T 4eco_A          192 SNNITF-VSKAVMR--LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC--PNLT---  263 (636)
T ss_dssp             SCEEEE-ECGGGGG--CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC--TTCS---
T ss_pred             cCCCcc-CCHHHhc--ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC--cCCc---
Confidence            467887 8887776  7788888887777655                  565544  4444433211111  0001   


Q ss_pred             CCCCCcCccceeecCCCCCCceeEEEEEcCCCC-Ccc-cCchhhcCC------CCCCEEEccCCCCCCCCCC--CCCC-C
Q 007860          403 APTNWDAWEGITCHPNKDETAVVISQIDLGSQG-LKG-YISDKISLL------SNLVNLNLSTNSLGGTLPS--GLGQ-Q  471 (587)
Q Consensus       403 ~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~-l~g-~~p~~l~~l------~~L~~L~Ls~N~l~g~ip~--~~~~-~  471 (587)
                                .  .+.....++.|+.|+|++|. ++| .+|..++.+      ++|+.|+|++|+++ .+|.  .++. +
T Consensus       264 ----------~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~  330 (636)
T 4eco_A          264 ----------K--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK  330 (636)
T ss_dssp             ----------S--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred             ----------c--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence                      0  01112233456667777776 666 666666665      66667777766666 6666  6666 6


Q ss_pred             CccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc---------------ccccceEE
Q 007860          472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIR  536 (587)
Q Consensus       472 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~  536 (587)
                      +|++|++++|+++|.+| .++.+++|+.|+|++|+++ .+|..+..+..+|+.|+++               +.+|+.|+
T Consensus       331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~  408 (636)
T 4eco_A          331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID  408 (636)
T ss_dssp             TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred             CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence            66777777776666666 6666666666666666666 5666665555336666665               11466666


Q ss_pred             CCCCcccccccc-------------cccccccccccc--------CCCCCCcEEEccCCCCCCCCCC
Q 007860          537 RGRNDYDFGLPQ-------------DLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       537 L~~N~l~~~~p~-------------~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      |++|++++.+|.             .|+.|++++|+|        ..+++|+.|+|++|+|+.+|..
T Consensus       409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            666666654432             344555666655        2345566666666666665553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=4e-17  Score=164.48  Aligned_cols=179  Identities=20%  Similarity=0.153  Sum_probs=134.3

Q ss_pred             CCCCCCcCcc---ceeecCCCC-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CC
Q 007860          402 CAPTNWDAWE---GITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QS  472 (587)
Q Consensus       402 c~~~~~~~~~---gv~c~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~  472 (587)
                      |...|.|...   .+.|.....     ...+.++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+.. ++
T Consensus         2 CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   81 (285)
T 1ozn_A            2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL   81 (285)
T ss_dssp             CCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence            5444445433   366654332     12346888999999998877778888999999999999988777888888 88


Q ss_pred             ccEEeccCCc-CCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEEC
Q 007860          473 LVRLDLSDNQ-FTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRR  537 (587)
Q Consensus       473 L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L  537 (587)
                      |++|++++|+ +....|..+..+++|+.|++++|++.+..|..+..+. +|+.|+++              +.+|+.|+|
T Consensus        82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            9999999987 7755577888888999999999988865555555555 58888877              567888899


Q ss_pred             CCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCC
Q 007860          538 GRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       538 ~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                      ++|++++..+      +.|+.|++++|+|        ..+++|+.|+|++|+++++|.
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence            8888874222      4577788888876        456788899999998888874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=5.4e-17  Score=174.69  Aligned_cols=184  Identities=20%  Similarity=0.205  Sum_probs=133.9

Q ss_pred             CCCCCCCCcC--ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C
Q 007860          400 DPCAPTNWDA--WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q  471 (587)
Q Consensus       400 ~pc~~~~~~~--~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~  471 (587)
                      ..|...|.|.  |..+.|......     ....++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..+.. +
T Consensus        44 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  123 (452)
T 3zyi_A           44 QNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA  123 (452)
T ss_dssp             CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc
Confidence            3566655565  467888765432     2346889999999999988999999999999999999999777788888 9


Q ss_pred             CccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-----------------------
Q 007860          472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-----------------------  528 (587)
Q Consensus       472 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-----------------------  528 (587)
                      +|++|+|++|++++..+..+..+++|+.|+|++|++. .+|...+....+|+.|+++                       
T Consensus       124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred             cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence            9999999999999666666888999999999999988 4554322222235555443                       


Q ss_pred             --------------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCC
Q 007860          529 --------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       529 --------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P  580 (587)
                                    +.+|+.|+|++|++++..|      ++|+.|++++|+|        .++++|+.|+|++|+|+++|
T Consensus       203 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          203 LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             CTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence                          2355666666666654333      3456666777765        45678888888888888888


Q ss_pred             CCCC
Q 007860          581 TLPL  584 (587)
Q Consensus       581 ~~~~  584 (587)
                      ...+
T Consensus       283 ~~~~  286 (452)
T 3zyi_A          283 HDLF  286 (452)
T ss_dssp             TTSS
T ss_pred             hHHh
Confidence            7543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=3e-17  Score=157.43  Aligned_cols=165  Identities=19%  Similarity=0.206  Sum_probs=122.5

Q ss_pred             CCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccE
Q 007860          402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR  475 (587)
Q Consensus       402 c~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~  475 (587)
                      |...|.|.|.++.|......     ....++.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|++
T Consensus         1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A            1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            44445699999999865432     2346899999999999877778899999999999999999554555667 99999


Q ss_pred             EeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchh-hhhcccCCceeeccccccceEECCCCccccccc------c
Q 007860          476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------Q  548 (587)
Q Consensus       476 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~  548 (587)
                      |+|++|++++..+..+..+++|++|+|++|++.+ +|.. +..+.           +|++|+|++|++++..+      +
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLT-----------QLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-----------TCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCC-----------cCCEEECCCCccceeCHHHhccCC
Confidence            9999999996666668999999999999999995 5544 44433           45666666777663221      3


Q ss_pred             cccccccccccc-CCCCCCcEEEccCCCCCC
Q 007860          549 DLMSLSAKRNRY-QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       549 ~L~~L~l~~N~i-~~l~~L~~L~Ls~N~l~~  578 (587)
                      .|+.|++++|.+ ..++.|+.|+++.|+++|
T Consensus       149 ~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          149 SLQYIWLHDNPWDCTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             TCCEEECCSCCBCCCTTTTHHHHHHHHHCTT
T ss_pred             CccEEEecCCCeecCCCCHHHHHHHHHhCCc
Confidence            456666777766 345566777776666663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1e-16  Score=171.87  Aligned_cols=184  Identities=18%  Similarity=0.211  Sum_probs=119.3

Q ss_pred             CCCCCCCCcC--ccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C
Q 007860          400 DPCAPTNWDA--WEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q  471 (587)
Q Consensus       400 ~pc~~~~~~~--~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~  471 (587)
                      .+|...|.|.  +..+.|.......     ...++.|+|++|.+.+..+..|.++++|+.|+|++|.+++..+..+.. +
T Consensus        33 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~  112 (440)
T 3zyj_A           33 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA  112 (440)
T ss_dssp             CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred             ccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence            4676666665  5678887544321     234677788888877777777777777777777777777555566666 7


Q ss_pred             CccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCch-hhhhcc------------------------cCCceee
Q 007860          472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIG------------------------VHGGAFD  526 (587)
Q Consensus       472 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~~~------------------------~~L~~l~  526 (587)
                      +|++|+|++|+++...+..+..+++|+.|+|++|++.. +|. .+..+.                        .+|+.|+
T Consensus       113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            77777777777774444457777777777777777763 333 222222                        2344444


Q ss_pred             cc------------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCC
Q 007860          527 LS------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       527 Ls------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P  580 (587)
                      |+            +.+|+.|+|++|++++..|      ++|+.|+|++|+|        ..+++|+.|+|++|+|+++|
T Consensus       192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             CTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            44            3356666666666654333      3456666777765        45678888888888888888


Q ss_pred             CCCC
Q 007860          581 TLPL  584 (587)
Q Consensus       581 ~~~~  584 (587)
                      ...+
T Consensus       272 ~~~~  275 (440)
T 3zyj_A          272 HDLF  275 (440)
T ss_dssp             TTTT
T ss_pred             hhHh
Confidence            7543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=3.4e-17  Score=166.68  Aligned_cols=178  Identities=17%  Similarity=0.175  Sum_probs=101.0

Q ss_pred             CCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCC--CCCCCCC-CCc
Q 007860          402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT--LPSGLGQ-QSL  473 (587)
Q Consensus       402 c~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~--ip~~~~~-~~L  473 (587)
                      |...|.|.|.++.|......     ....++.|+|++|.++...+..+.++++|+.|+|++|.++..  +|..+.. ++|
T Consensus         1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            44445589999999865432     224688899999998854445578888888888888888722  2333333 445


Q ss_pred             cEEeccCCcCCccCCcc-------------------------ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860          474 VRLDLSDNQFTGSIPDS-------------------------LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~-------------------------l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls  528 (587)
                      ++|+|++|+++ .+|..                         +..+++|+.|++++|.+.+..|..+..+. +|+.|+++
T Consensus        81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~  158 (306)
T 2z66_A           81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMA  158 (306)
T ss_dssp             CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECT
T ss_pred             CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECC
Confidence            55555555544 34444                         44455555555555555443333333333 35555444


Q ss_pred             ---------------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCC
Q 007860          529 ---------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       529 ---------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~  579 (587)
                                     +.+|+.|+|++|++++..|      +.|+.|++++|+|        ..+++|+.|+|++|++++.
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence                           3345555565555553322      2355555666654        3345666666666666654


Q ss_pred             CC
Q 007860          580 PT  581 (587)
Q Consensus       580 P~  581 (587)
                      +.
T Consensus       239 ~~  240 (306)
T 2z66_A          239 KK  240 (306)
T ss_dssp             SS
T ss_pred             CH
Confidence            43

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=3.1e-16  Score=161.41  Aligned_cols=180  Identities=17%  Similarity=0.155  Sum_probs=121.9

Q ss_pred             CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860          400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (587)
Q Consensus       400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L  473 (587)
                      ..|...|.|.|..+.|......     ..+.++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..+.. ++|
T Consensus        23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            4566666689999999754422     2346888999999999877778999999999999999999877888888 999


Q ss_pred             cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcc-------------------------cCCceeecc
Q 007860          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG-------------------------VHGGAFDLS  528 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~-------------------------~~L~~l~Ls  528 (587)
                      ++|++++|+++ .+|..+.  ++|+.|++++|++.+..+..+..+.                         .+|+.|+++
T Consensus       103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            99999999988 6776543  5666666666666532222233322                         134444444


Q ss_pred             -----------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCC
Q 007860          529 -----------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       529 -----------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                                 ..+|++|+|++|++++..|      +.|+.|++++|+|        ..+++|+.|+|++|+|+.+|..
T Consensus       180 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  258 (330)
T 1xku_A          180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG  258 (330)
T ss_dssp             SSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred             CCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence                       1345566666666554322      3455566666655        3456677777777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=6e-18  Score=174.44  Aligned_cols=238  Identities=14%  Similarity=0.158  Sum_probs=169.1

Q ss_pred             eEEEEEECCccccccceecccCCcceeeeeeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHH
Q 007860          306 RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRAL  385 (587)
Q Consensus       306 r~F~V~in~~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~l  385 (587)
                      ++-.+.+.++.+..++     ..+. ....++.+++++|.+. .+|...+.  +..++.+.+..+.+..+|..+..+..+
T Consensus        82 ~l~~L~L~~n~l~~lp-----~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~--l~~L~~L~Ls~n~l~~lp~~l~~l~~L  152 (328)
T 4fcg_A           82 GRVALELRSVPLPQFP-----DQAF-RLSHLQHMTIDAAGLM-ELPDTMQQ--FAGLETLTLARNPLRALPASIASLNRL  152 (328)
T ss_dssp             TCCEEEEESSCCSSCC-----SCGG-GGTTCSEEEEESSCCC-CCCSCGGG--GTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred             ceeEEEccCCCchhcC-----hhhh-hCCCCCEEECCCCCcc-chhHHHhc--cCCCCEEECCCCccccCcHHHhcCcCC
Confidence            3345556665554322     1111 1336788889999998 88887776  788999999888888888876665555


Q ss_pred             HHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCC
Q 007860          386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP  465 (587)
Q Consensus       386 k~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip  465 (587)
                      +......+  ...+.  .|..   +..... ......++.|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|
T Consensus       153 ~~L~L~~n--~~~~~--~p~~---~~~~~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~  222 (328)
T 4fcg_A          153 RELSIRAC--PELTE--LPEP---LASTDA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG  222 (328)
T ss_dssp             CEEEEEEE--TTCCC--CCSC---SEEEC--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCC
T ss_pred             CEEECCCC--CCccc--cChh---Hhhccc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCc
Confidence            44321110  01110  1111   110000 011112456899999999999 88999999999999999999999 577


Q ss_pred             CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860          466 SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       466 ~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      +.+.. ++|++|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|..+..+.           +|+.|+|++|++.+
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-----------~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-----------QLEKLDLRGCVNLS  291 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-----------TCCEEECTTCTTCC
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-----------CCCEEeCCCCCchh
Confidence            78888 9999999999999999999999999999999999999999998877644           47788888999998


Q ss_pred             ccccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860          545 GLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       545 ~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      .+|..+..          +++|+.+++..|.+..+++..
T Consensus       292 ~iP~~l~~----------L~~L~~l~l~~~~~~~l~~~~  320 (328)
T 4fcg_A          292 RLPSLIAQ----------LPANCIILVPPHLQAQLDQHR  320 (328)
T ss_dssp             CCCGGGGG----------SCTTCEEECCGGGSCC-----
T ss_pred             hccHHHhh----------ccCceEEeCCHHHHHHHhhhh
Confidence            99987544          457888888888777766543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=3.5e-16  Score=156.41  Aligned_cols=178  Identities=21%  Similarity=0.256  Sum_probs=115.8

Q ss_pred             CCCCCCCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CC
Q 007860          396 GWNGDPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LG  469 (587)
Q Consensus       396 ~w~g~pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~  469 (587)
                      .|.|..|.  +...+..+.|.......     ...++.|+|++|.+++..+..+..+++|++|+|++|.++ .+|.. +.
T Consensus         6 ~~~~~~C~--c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~   82 (270)
T 2o6q_A            6 KKDGGVCS--CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK   82 (270)
T ss_dssp             GGGTCSBE--EETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTS
T ss_pred             CCCCCCCE--eCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhc
Confidence            45555553  00135566665443221     235888999999999777778999999999999999998 55554 46


Q ss_pred             C-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccce
Q 007860          470 Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICC  534 (587)
Q Consensus       470 ~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~  534 (587)
                      . ++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+. +|+.|+|+              +.+|+.
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCcccce
Confidence            6 9999999999999966566778899999999999999854444444443 46666665              344555


Q ss_pred             EECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCC
Q 007860          535 IRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAK  577 (587)
Q Consensus       535 L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~  577 (587)
                      |+|++|+++...+      ++|+.|++++|+|        ..+.+|+.|+|++|.+.
T Consensus       162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            5555555542111      2344445555544        23344555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=2.2e-16  Score=158.30  Aligned_cols=157  Identities=15%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+.. ++|++|+|++|++++..|..+..+++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            3566666666666555556666666666666666666444445555 666666666666665555555566666666666


Q ss_pred             CCcCcccCchhhhhcccCCceeecc---------------ccccceEECCCCcccccccc------ccc----ccccccc
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLPQ------DLM----SLSAKRN  558 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p~------~L~----~L~l~~N  558 (587)
                      +|++.+..+..+..+. +|+.|+++               +.+|++|+|++|++++..+.      .+.    .|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            6665532222333333 35555544               34555666666665532221      122    4455555


Q ss_pred             ccC-------CCCCCcEEEccCCCCCCCCCC
Q 007860          559 RYQ-------RQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       559 ~i~-------~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      +|.       ...+|+.|+|++|+|+++|..
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  218 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDG  218 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred             cccccCccccCCCcccEEECCCCceeecCHh
Confidence            542       122456666666666665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.68  E-value=1.3e-16  Score=171.26  Aligned_cols=128  Identities=18%  Similarity=0.187  Sum_probs=78.6

Q ss_pred             CCCCCCCCcCccceeecCCCCCC----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC-CCCC-CCc
Q 007860          400 DPCAPTNWDAWEGITCHPNKDET----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSL  473 (587)
Q Consensus       400 ~pc~~~~~~~~~gv~c~~~~~~~----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~-~~L  473 (587)
                      +||...|.|....+.|.......    .+.++.|+|++|.+++..|..+.++++|++|+|++|.+.+.+++ .+.. ++|
T Consensus         2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A            2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence            56765554555558887554322    24577888888888877777777777777777777777655543 4555 777


Q ss_pred             cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchh--hhhcccCCceeecc
Q 007860          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE--LYSIGVHGGAFDLS  528 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~--l~~~~~~L~~l~Ls  528 (587)
                      ++|+|++|++++..|..++.+++|++|+|++|++++.+|..  +..+. +|+.|+|+
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~  137 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLR  137 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT-TCCEEECC
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc-cCCEEECC
Confidence            77777777777666666666666666666666666433332  33333 35555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=153.36  Aligned_cols=157  Identities=12%  Similarity=0.153  Sum_probs=125.1

Q ss_pred             CCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCc-hhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860          401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (587)
Q Consensus       401 pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L  473 (587)
                      .|...|.|.|..+.|.......     ...++.|+|++|.+++..+ ..+..+++|+.|+|++|++++..+..+.. ++|
T Consensus         4 ~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A            4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            5777777999999998655322     2247789999999998765 45899999999999999999777778888 999


Q ss_pred             cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccc
Q 007860          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSL  553 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L  553 (587)
                      ++|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+           .+|+.|+|++|++++..|..    
T Consensus        84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~----  148 (220)
T 2v70_A           84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-----------SSVRLLSLYDNQITTVAPGA----  148 (220)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC-----------TTCSEEECTTSCCCCBCTTT----
T ss_pred             CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC-----------ccCCEEECCCCcCCEECHHH----
Confidence            999999999997777779999999999999999997666666543           35778888899998544543    


Q ss_pred             cccccccCCCCCCcEEEccCCCCCC
Q 007860          554 SAKRNRYQRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       554 ~l~~N~i~~l~~L~~L~Ls~N~l~~  578 (587)
                            |..+.+|+.|+|++|.+.+
T Consensus       149 ------~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          149 ------FDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             ------TTTCTTCCEEECCSCCEEC
T ss_pred             ------hcCCCCCCEEEecCcCCcC
Confidence                  3445677777777777653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=2.9e-16  Score=155.26  Aligned_cols=158  Identities=20%  Similarity=0.225  Sum_probs=123.8

Q ss_pred             ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcC
Q 007860          410 WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF  483 (587)
Q Consensus       410 ~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l  483 (587)
                      +..+.|......     ....++.|+|++|.+.+..+..+..+++|++|+|++|.+++..|..+.. ++|++|+|++|++
T Consensus        16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence            455666544322     2245889999999999988889999999999999999999877777888 9999999999999


Q ss_pred             CccCCccccCCCCCCEEEccCCcCcccCchhh-hhcccCCceeeccccccceEECCCCccccccc------ccccccccc
Q 007860          484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAK  556 (587)
Q Consensus       484 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~  556 (587)
                      ++..+..+..+++|+.|+|++|++++ +|... ..+           .+|+.|+|++|++++..+      ++|+.|+|+
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l-----------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRL-----------TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC-----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCC-cChhHhccC-----------CcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            97767778999999999999999994 55543 333           346666777777764222      457777888


Q ss_pred             cccc--------CCCCCCcEEEccCCCCCCC
Q 007860          557 RNRY--------QRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       557 ~N~i--------~~l~~L~~L~Ls~N~l~~~  579 (587)
                      +|+|        ..+++|+.|+|++|++++-
T Consensus       164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8876        4567899999999998876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=5.5e-16  Score=151.28  Aligned_cols=150  Identities=17%  Similarity=0.202  Sum_probs=121.3

Q ss_pred             cCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCC
Q 007860          408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN  481 (587)
Q Consensus       408 ~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N  481 (587)
                      |+|.++.|......     ....++.|+|++|.+++..|..+..+++|+.|+|++|+|.+..+..+.. ++|+.|+|++|
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            89999999865432     2346899999999999998999999999999999999998444445566 99999999999


Q ss_pred             cCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccC
Q 007860          482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQ  561 (587)
Q Consensus       482 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~  561 (587)
                      +|++..+..+..+++|+.|+|++|+|+ .+|..+..+.           +|+.|+|++|+++ .+|..         .|.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----------~L~~L~L~~N~l~-~~~~~---------~~~  156 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-----------HLTHLALDQNQLK-SIPHG---------AFD  156 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-----------TCSEEECCSSCCC-CCCTT---------TTT
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-----------CCCEEECCCCcCC-ccCHH---------HHh
Confidence            999666667899999999999999999 7888775543           5778888899887 44432         245


Q ss_pred             CCCCCcEEEccCCCCCCC
Q 007860          562 RQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       562 ~l~~L~~L~Ls~N~l~~~  579 (587)
                      .+.+|+.|+|++|.+..-
T Consensus       157 ~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          157 RLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TCTTCCEEECTTSCBCTT
T ss_pred             CCCCCCEEEeeCCCccCC
Confidence            566788888888877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=3.3e-16  Score=151.89  Aligned_cols=156  Identities=17%  Similarity=0.193  Sum_probs=121.8

Q ss_pred             CCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCcc
Q 007860          401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV  474 (587)
Q Consensus       401 pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~  474 (587)
                      +|...|.|.|..+.|.......     ...++.|+|++|.|++..+..+..+++|+.|+|++|++++..|..+.. ++|+
T Consensus         4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B            4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred             CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence            6777777999999998654322     236899999999999888889999999999999999999888999998 9999


Q ss_pred             EEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccccccccc
Q 007860          475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLS  554 (587)
Q Consensus       475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~  554 (587)
                      +|+|++|+|+...+..+..+++|+.|+|++|++.+..|..+..+           .+|+.|+|++|++++ ++..     
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~-~~~~-----  146 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-----------HNLNLLSLYDNKLQT-IAKG-----  146 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCSC-CCTT-----
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC-----------CCCCEEECCCCcCCE-ECHH-----
Confidence            99999999994444457899999999999999997556555543           347778888888874 3321     


Q ss_pred             ccccccCCCCCCcEEEccCCCCC
Q 007860          555 AKRNRYQRQKSLMLLEMESQHAK  577 (587)
Q Consensus       555 l~~N~i~~l~~L~~L~Ls~N~l~  577 (587)
                          .|..+.+|+.|+|++|.+.
T Consensus       147 ----~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          147 ----TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ----TTTTCTTCCEEECCSSCEE
T ss_pred             ----HHhCCCCCCEEEeCCCCcC
Confidence                1334556666666666553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=4.5e-16  Score=155.63  Aligned_cols=169  Identities=19%  Similarity=0.261  Sum_probs=135.7

Q ss_pred             CcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc
Q 007860          407 WDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG  485 (587)
Q Consensus       407 ~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g  485 (587)
                      +|.|.|..|....     ..+.+++++++++ .+|..+.  ++|+.|+|++|.+++..+..+.. ++|++|+|++|+++.
T Consensus         4 ~C~~~~~~C~c~~-----~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~   75 (270)
T 2o6q_A            4 LCKKDGGVCSCNN-----NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT   75 (270)
T ss_dssp             CBGGGTCSBEEET-----TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC
T ss_pred             cCCCCCCCCEeCC-----CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe
Confidence            4799999997643     2457999999998 4676554  68999999999999666667888 999999999999995


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc----
Q 007860          486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP----  547 (587)
Q Consensus       486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p----  547 (587)
                      ..+..+..+++|+.|+|++|++.+ +|...+....+|+.|+++              +.+|+.|+|++|++++..+    
T Consensus        76 i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           76 LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             eChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence            444456889999999999999994 665544334469999887              5789999999999874222    


Q ss_pred             --ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860          548 --QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       548 --~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                        +.|+.|++++|+|        ..+++|+.|+|++|+|+++|...+
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence              4678888999976        467899999999999999997543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.67  E-value=1.2e-16  Score=171.66  Aligned_cols=117  Identities=11%  Similarity=0.041  Sum_probs=66.7

Q ss_pred             eeeEeecCCccEEEEEccc-chhhhhhcccccccccCCCCCc-hHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccc
Q 007860          335 HYVAKNLSSTELTVKLVPV-VGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~-~~s~~Ln~lei~~~~~~~~~~~-p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~g  412 (587)
                      .++.+++++|.+.+.+++. ...  +..++.+.+..+.+..+ |..+..+..++......               |...+
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~---------------n~l~~  117 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ---------------CNLDG  117 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTT--CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT---------------SCCBT
T ss_pred             cccEEECcCCcccceECcccccc--cccCCEEeCCCCccCccChhhccCcccCCEEeCCC---------------CCCCc
Confidence            4666777777665555443 333  55666666666655443 33333333332211110               11221


Q ss_pred             eeecCCCCCCceeEEEEEcCCCCCcccCchh-hcCCCCCCEEEccCCCCCCCCCCCC
Q 007860          413 ITCHPNKDETAVVISQIDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGL  468 (587)
Q Consensus       413 v~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~  468 (587)
                      ..-.......+..|+.|+|++|.+.+..|.. +..+++|++|+|++|.+++..|..+
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  174 (455)
T 3v47_A          118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL  174 (455)
T ss_dssp             HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred             cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence            1111111223456888888888888877766 7888889999998888887766544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=6.7e-17  Score=186.14  Aligned_cols=228  Identities=14%  Similarity=0.181  Sum_probs=130.1

Q ss_pred             eeeeEeecCCccEEEEEcccchhhhhhcccccccccCC-CC--CchHHHHHHH-------HHHHhcCCCCCCCCCCCCCC
Q 007860          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LS--TVPEQVIAMR-------ALKESLRVPDRMGWNGDPCA  403 (587)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~-~~--~~p~~~~aL~-------~lk~~~~~~~~~~w~g~pc~  403 (587)
                      ..++.+++++|.+.+.+|+..+.  +..++.+.+..+. +.  .+|..+..+.       .++......+..  ..   .
T Consensus       491 ~~L~~L~Ls~N~l~~~iP~~l~~--L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L--~~---i  563 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLPDFLYD--LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL--EE---F  563 (876)
T ss_dssp             TTCCEEEEESCTTCCSCCGGGGG--CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC--CB---C
T ss_pred             CCCCEEECcCCCCCccChHHHhC--CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC--Cc---c
Confidence            35778888888888888877776  7788888888876 65  4888877766       443322211111  00   1


Q ss_pred             CC--CCc---C-------ccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCC-CCEEEccCCCCCCCCCCCCCC
Q 007860          404 PT--NWD---A-------WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSN-LVNLNLSTNSLGGTLPSGLGQ  470 (587)
Q Consensus       404 ~~--~~~---~-------~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~~~~  470 (587)
                      |.  ...   .       ...+...+ ....++.|+.|+|++|.++ .+|..+..+++ |+.|+|++|.++ .+|..+..
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~  640 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA  640 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred             CChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence            11  000   0       01111111 2233456667777777766 66666667766 777777777776 66666555


Q ss_pred             -C--CccEEeccCCcCCccCCcc---cc--CCCCCCEEEccCCcCcccCchhhhhcccCCceeeccc-----------c-
Q 007860          471 -Q--SLVRLDLSDNQFTGSIPDS---LT--SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSV-----------V-  530 (587)
Q Consensus       471 -~--~L~~L~Ls~N~l~g~iP~~---l~--~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl-----------~-  530 (587)
                       .  +|+.|+|++|+++|.+|..   ++  .+++|+.|+|++|++. .+|..++....+|+.|+|+.           . 
T Consensus       641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~  719 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKP  719 (876)
T ss_dssp             TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred             cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence             2  3777777777776655532   22  2346677777777776 56666654434566666650           0 


Q ss_pred             ---------ccceEECCCCccccccc--------ccccccccccccc-------CCCCCCcEEEccC
Q 007860          531 ---------YICCIRRGRNDYDFGLP--------QDLMSLSAKRNRY-------QRQKSLMLLEMES  573 (587)
Q Consensus       531 ---------~L~~L~L~~N~l~~~~p--------~~L~~L~l~~N~i-------~~l~~L~~L~Ls~  573 (587)
                               +|+.|+|++|+++ .+|        +.|+.|+|++|+|       ..+++|+.|+|++
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred             ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence                     5566666666655 333        2344455555554       2344556666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.66  E-value=3.7e-16  Score=161.03  Aligned_cols=177  Identities=16%  Similarity=0.207  Sum_probs=115.9

Q ss_pred             CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860          400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (587)
Q Consensus       400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L  473 (587)
                      ..|...|.|.|..+.|......     ..+.++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..+.. ++|
T Consensus        25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            3565555688999999754422     1235788889988888777778888888888888888888777777777 888


Q ss_pred             cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchh-hhhcccCCceeeccc-----------------------
Q 007860          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSV-----------------------  529 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~~~~~L~~l~Lsl-----------------------  529 (587)
                      ++|+|++|+++ .+|..+.  ++|++|++++|++.+ +|.. +..+. +|+.|+++.                       
T Consensus       105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l  179 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI  179 (332)
T ss_dssp             CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred             CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCc-cCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence            88888888887 6666554  566777777776663 4433 33332 455555541                       


Q ss_pred             -------------cccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCC
Q 007860          530 -------------VYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       530 -------------~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                                   .+|+.|+|++|++++..|      +.|+.|++++|+|        ..+++|+.|+|++|+|+.+|.
T Consensus       180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  258 (332)
T 2ft3_A          180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA  258 (332)
T ss_dssp             CSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred             cCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence                         244555555555543221      2455555666654        345566677777777766665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=172.54  Aligned_cols=157  Identities=13%  Similarity=0.118  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..+.. ++|+.|+|++|++.+..+..+..+++|+.|+++
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence            3444555555554444444455555555555555554322223333 445555555555444444444444555555555


Q ss_pred             CCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc---
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY---  560 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i---  560 (587)
                      +|++.+.+|....... +|+.|+|+              +.+|+.|+|++|++++..+      +.|+.|+|++|+|   
T Consensus       209 ~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          209 HWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             CCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred             CCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence            4444444444433332 34444443              3345556666665553221      2455555666554   


Q ss_pred             -----CCCCCCcEEEccCCCCCCCCCC
Q 007860          561 -----QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       561 -----~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                           ..+++|+.|+|++|+|+++|..
T Consensus       288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          288 EPYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             CTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             CHHHhcCcccCCEEECCCCcCceeCHh
Confidence                 3455666666666666666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=5.4e-16  Score=167.78  Aligned_cols=127  Identities=17%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             CCCCCCCcC--ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CC
Q 007860          401 PCAPTNWDA--WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QS  472 (587)
Q Consensus       401 pc~~~~~~~--~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~  472 (587)
                      .|...|.|.  |..+.|......     ....++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. ++
T Consensus         2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   81 (477)
T 2id5_A            2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN   81 (477)
T ss_dssp             CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence            355555563  567788654321     2235677777777777766777777777777777777777666666666 77


Q ss_pred             ccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860          473 LVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       473 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls  528 (587)
                      |++|+|++|++++..+..+..+++|++|+|++|++.+..|..+..+. +|+.|+|+
T Consensus        82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~  136 (477)
T 2id5_A           82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVG  136 (477)
T ss_dssp             CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEEC
T ss_pred             CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECC
Confidence            77777777777643334456667777777777766654444444443 35555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=163.38  Aligned_cols=153  Identities=18%  Similarity=0.190  Sum_probs=120.2

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCc-cccCCCCCCEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLV  500 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L  500 (587)
                      +..|+.|+|++|.++...+..+..+++|+.|+|++|.+.+..+..+.. ++|++|+|++|+..+.+|. .+..+++|+.|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            456888888888888666667888888888888888888555556666 8888888888544445554 68889999999


Q ss_pred             EccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY  560 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i  560 (587)
                      +|++|+++ .+|. +..+. +|+.|+|+              +.+|+.|+|++|++++..+      ++|+.|+|++|+|
T Consensus       191 ~L~~n~l~-~~~~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          191 NLAMCNLR-EIPN-LTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             ECTTSCCS-SCCC-CTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             cCCCCcCc-cccc-cCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            99999998 5774 55554 69999988              5689999999999986433      5688899999987


Q ss_pred             --------CCCCCCcEEEccCCCCCC
Q 007860          561 --------QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       561 --------~~l~~L~~L~Ls~N~l~~  578 (587)
                              ..+.+|+.|+|++|.+..
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CccChhHhccccCCCEEEcCCCCccC
Confidence                    457889999999998753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.65  E-value=1.8e-16  Score=162.12  Aligned_cols=85  Identities=21%  Similarity=0.187  Sum_probs=59.5

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCC-----CCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc--CCccc--c
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--IPDSL--T  492 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~--iP~~l--~  492 (587)
                      ++.|+.|+|++|.+++. |..+..+     ++|++|+|++|++.+..|..++. ++|++|+|++|++.|.  +|..+  +
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            45577777777777766 6666665     77777777777777666667776 7777777777777654  33344  6


Q ss_pred             CCCCCCEEEccCCcCc
Q 007860          493 SSSKLQLVLLNNNLLE  508 (587)
Q Consensus       493 ~l~~L~~L~Ls~N~l~  508 (587)
                      .+++|+.|+|++|+++
T Consensus       199 ~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          199 KFPTLQVLALRNAGME  214 (312)
T ss_dssp             SCTTCCEEECTTSCCC
T ss_pred             cCCCCCEEECCCCcCc
Confidence            7777777777777776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.64  E-value=4.6e-16  Score=173.40  Aligned_cols=190  Identities=17%  Similarity=0.147  Sum_probs=104.4

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCch-HHHHHHHHHHHhcCCCCCCCCC-CCCCCC--------
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVP-EQVIAMRALKESLRVPDRMGWN-GDPCAP--------  404 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p-~~~~aL~~lk~~~~~~~~~~w~-g~pc~~--------  404 (587)
                      .++.+++++|+++ .+|+....  +..++.+.+..+.+..++ ..+..+..++......+..... ...+..        
T Consensus       279 ~L~~L~l~~n~l~-~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          279 GLQELDLTATHLS-ELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TCSEEECTTSCCS-CCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             CCCEEeccCCccC-CCChhhcc--cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            4666777777766 66665544  556666666666655442 2333333333322111100000 000000        


Q ss_pred             -CCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCC
Q 007860          405 -TNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDN  481 (587)
Q Consensus       405 -~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N  481 (587)
                       -..+...++.|.+.....++.|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|.. +.. ++|++|++++|
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence             000122333332333344456777777777777777777777777777777777777665554 455 77777777777


Q ss_pred             cCCccCCccccCCCCCCEEEccCCcCcccC---chhhhhcccCCceeecc
Q 007860          482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRV---PEELYSIGVHGGAFDLS  528 (587)
Q Consensus       482 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~i---p~~l~~~~~~L~~l~Ls  528 (587)
                      ++++..|..++.+++|+.|++++|++.+..   +..+..+. +|+.|+++
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls  484 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLS  484 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECT
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECC
Confidence            777666777777777777777777776421   13344433 35555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.6e-16  Score=163.60  Aligned_cols=171  Identities=17%  Similarity=0.193  Sum_probs=139.5

Q ss_pred             cCccceeecCCC--C-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEecc
Q 007860          408 DAWEGITCHPNK--D-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS  479 (587)
Q Consensus       408 ~~~~gv~c~~~~--~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls  479 (587)
                      |.|.++ |....  .     .....++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+.. ++|++|+|+
T Consensus        30 C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           30 CDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             ECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            778776 54322  1     12346899999999999877779999999999999999999877888888 999999999


Q ss_pred             CCcCCccCCc-cccCCCCCCEEEccCCcCcccCch--hhhhcccCCceeecc---------------ccccceEECCCCc
Q 007860          480 DNQFTGSIPD-SLTSSSKLQLVLLNNNLLEGRVPE--ELYSIGVHGGAFDLS---------------VVYICCIRRGRND  541 (587)
Q Consensus       480 ~N~l~g~iP~-~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~  541 (587)
                      +|++++ +|. .++.+++|++|++++|++. .+|.  .+..+. +|+.|+++               +.+|++|++++|+
T Consensus       109 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             SSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999995 555 4899999999999999998 5776  455554 68888887               4578899999999


Q ss_pred             cccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCC
Q 007860          542 YDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       542 l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      +++..|      ++|+.|++++|++        ..+++|+.|+|++|++++++..
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence            986545      4577788999987        3478999999999999987643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.64  E-value=2.9e-16  Score=173.61  Aligned_cols=128  Identities=18%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc--cCCccccCCCCCCEEEccCCcCcccCchhhhhcccC
Q 007860          445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG--SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH  521 (587)
Q Consensus       445 ~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g--~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~  521 (587)
                      ..+++|+.|++++|.+++.+|..+.. ++|+.|+|++|++++  .+|..++.+++|+.|++++|++.+.+|...+..   
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~---  426 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW---  426 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC---
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC---
Confidence            34455555555555555545555544 555555555555553  223344555555555555555554344332221   


Q ss_pred             CceeeccccccceEECCCCccccccc----ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCC
Q 007860          522 GGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       522 L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                             +.+|+.|+|++|++++.+|    +.|+.|++++|+|       ..+++|+.|+|++|+|+.+|..
T Consensus       427 -------l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          427 -------AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             -------CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             -------cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence                   3456777777887766443    5677788888876       3456788888888888888875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.64  E-value=2.5e-16  Score=172.27  Aligned_cols=111  Identities=18%  Similarity=0.246  Sum_probs=80.1

Q ss_pred             CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcc--cCchhhhhcccCCceeecc---------------ccccc
Q 007860          471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG--RVPEELYSIGVHGGAFDLS---------------VVYIC  533 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~~~~~L~~l~Ls---------------l~~L~  533 (587)
                      ++|++|++++|++++.+|..++.+++|+.|++++|++.+  .+|..+..+. +|+.|+++               +.+|+
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCC
Confidence            677777777777777677777777777777777777764  3445555554 47777666               34677


Q ss_pred             eEECCCCccccccc----ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCC
Q 007860          534 CIRRGRNDYDFGLP----QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       534 ~L~L~~N~l~~~~p----~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      .|+|++|++++.+|    +.|+.|++++|+|       ..+++|+.|+|++|+|+.+|..
T Consensus       403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             EEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             EEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence            88888888866444    5678888888876       3566788888888888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=1.7e-15  Score=152.48  Aligned_cols=151  Identities=21%  Similarity=0.207  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCC-CCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      |+.|+|++|.+++..|..+..+++|++|+|++|. +....|..+.. ++|++|++++|++++..|..+..+++|+.|+++
T Consensus        58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence            4555555555555555555555555555555554 44333444444 555555555555554445555555555555555


Q ss_pred             CCcCcccCchh-hhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc--
Q 007860          504 NNLLEGRVPEE-LYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--  560 (587)
Q Consensus       504 ~N~l~g~ip~~-l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--  560 (587)
                      +|++.+ ++.. +..+. +|+.|+|+              +.+|+.|+|++|++++..|      +.|+.|++++|+|  
T Consensus       138 ~n~l~~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          138 DNALQA-LPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             SSCCCC-CCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcccc-cCHhHhccCC-CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            555553 3322 33332 35555554              4567888888888876544      4677888999876  


Q ss_pred             ------CCCCCCcEEEccCCCCCC
Q 007860          561 ------QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       561 ------~~l~~L~~L~Ls~N~l~~  578 (587)
                            ..+++|+.|+|++|++..
T Consensus       216 ~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          216 LPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCHHHcccCcccCEEeccCCCccC
Confidence                  567899999999998864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=6.6e-16  Score=151.39  Aligned_cols=178  Identities=15%  Similarity=0.205  Sum_probs=138.7

Q ss_pred             CCCCCCcCc-ccee--ecCCCC--CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCC-CCCCCCCCCCC-CCcc
Q 007860          402 CAPTNWDAW-EGIT--CHPNKD--ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLV  474 (587)
Q Consensus       402 c~~~~~~~~-~gv~--c~~~~~--~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~-~~L~  474 (587)
                      |...|.|.+ ..+.  |..-..  .....++.|+|++|++++..+..+..+++|+.|++++|+ +++..+..+.. ++|+
T Consensus         4 cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~   83 (239)
T 2xwt_C            4 SSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT   83 (239)
T ss_dssp             CSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred             CCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence            444444654 4444  753110  022368899999999998888899999999999999997 87544556777 9999


Q ss_pred             EEeccC-CcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCc---eeecc---------------ccccc-e
Q 007860          475 RLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG---AFDLS---------------VVYIC-C  534 (587)
Q Consensus       475 ~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~---~l~Ls---------------l~~L~-~  534 (587)
                      +|++++ |++++..+..+..+++|+.|++++|++++ +|. +..+. +|+   .|+++               +.+|+ .
T Consensus        84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~  160 (239)
T 2xwt_C           84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLT  160 (239)
T ss_dssp             EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred             EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeE
Confidence            999999 99996666788999999999999999985 886 55554 466   66665               45788 9


Q ss_pred             EECCCCccccccc------cccccccccccc-c--------CCC-CCCcEEEccCCCCCCCCCCC
Q 007860          535 IRRGRNDYDFGLP------QDLMSLSAKRNR-Y--------QRQ-KSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       535 L~L~~N~l~~~~p------~~L~~L~l~~N~-i--------~~l-~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      |+|++|+++ .+|      ..|+.|++++|+ +        .++ .+|+.|+|++|+|+++|...
T Consensus       161 L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~  224 (239)
T 2xwt_C          161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG  224 (239)
T ss_dssp             EECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT
T ss_pred             EEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH
Confidence            999999987 555      358889999995 6        456 89999999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=4.2e-16  Score=171.53  Aligned_cols=171  Identities=16%  Similarity=0.136  Sum_probs=141.7

Q ss_pred             cCccceeecCCC--C-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEecc
Q 007860          408 DAWEGITCHPNK--D-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS  479 (587)
Q Consensus       408 ~~~~gv~c~~~~--~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls  479 (587)
                      |.|.++ |+...  .     .....++.|+|++|.+++..|..+..+++|++|+|++|++++..|..+.. ++|++|+|+
T Consensus         4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            567776 65332  1     12346899999999999988999999999999999999999888888988 999999999


Q ss_pred             CCcCCccCCccccCCCCCCEEEccCCcCcc-cCchhhhhcccCCceeecc---------------ccccceEECCCCccc
Q 007860          480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEG-RVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYD  543 (587)
Q Consensus       480 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~  543 (587)
                      +|++++..|..++.+++|++|++++|++.+ .+|..+..+. +|+.|+++               +.+|++|+|++|+++
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            999997777779999999999999999985 3566677665 58888886               456889999999998


Q ss_pred             ccccc------cccccccccccc--------CCCCCCcEEEccCCCCCCCC
Q 007860          544 FGLPQ------DLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       544 ~~~p~------~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P  580 (587)
                      +..|.      .|+.|++++|.+        ..+++|+.|++++|++++++
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  212 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ  212 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc
Confidence            76663      466677888875        35889999999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=1.7e-15  Score=158.10  Aligned_cols=166  Identities=22%  Similarity=0.236  Sum_probs=124.0

Q ss_pred             CCCCCCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC
Q 007860          397 WNGDPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ  470 (587)
Q Consensus       397 w~g~pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~  470 (587)
                      .....|...|.|.+..+.|.......     ...++.|+|++|.|++..+..+. .+++|+.|+|++|+|++..|..+..
T Consensus         7 ~~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   86 (361)
T 2xot_A            7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP   86 (361)
T ss_dssp             CCCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence            34467888888999999998655332     23478899999999988888787 9999999999999999766677888


Q ss_pred             -CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccc
Q 007860          471 -QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQD  549 (587)
Q Consensus       471 -~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~  549 (587)
                       ++|++|+|++|+|++..+..|..+++|+.|+|++|++.+..|..+..+           .+|+.|+|++|+++ .+|..
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-----------~~L~~L~L~~N~l~-~l~~~  154 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-----------AQLQKLYLSQNQIS-RFPVE  154 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----------TTCCEEECCSSCCC-SCCGG
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc-----------ccCCEEECCCCcCC-eeCHH
Confidence             999999999999997667779999999999999999996555555543           34677788888887 44432


Q ss_pred             cccccccccccCCCCCCcEEEccCCCCCCCC
Q 007860          550 LMSLSAKRNRYQRQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       550 L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P  580 (587)
                      +-      ..+..+.+|+.|+|++|+|+.+|
T Consensus       155 ~~------~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          155 LI------KDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             GT------C----CTTCCEEECCSSCCCCCC
T ss_pred             Hh------cCcccCCcCCEEECCCCCCCccC
Confidence            10      00133455556666666655555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.63  E-value=3.7e-16  Score=159.71  Aligned_cols=155  Identities=15%  Similarity=0.127  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCCcccCchhh--cCCCCCCEEEccCCCCCCCCCCCCCC------CCccEEeccCCcCCccCCccccCCCC
Q 007860          425 VISQIDLGSQGLKGYISDKI--SLLSNLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTSSSK  496 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~------~~L~~L~Ls~N~l~g~iP~~l~~l~~  496 (587)
                      .|+.|+|++|.+++.+|..+  ..+++|++|+|++|++++. |..+..      ++|++|+|++|++++..|..++.+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            46677777777777777765  7777777777777777755 554432      56777777777777666677777777


Q ss_pred             CCEEEccCCcCccc--Cchhh--hhcccCCceeecc-----------------ccccceEECCCCccccccc-------c
Q 007860          497 LQLVLLNNNLLEGR--VPEEL--YSIGVHGGAFDLS-----------------VVYICCIRRGRNDYDFGLP-------Q  548 (587)
Q Consensus       497 L~~L~Ls~N~l~g~--ip~~l--~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~l~~~~p-------~  548 (587)
                      |+.|+|++|++.|.  +|..+  ..+. +|+.|+|+                 +.+|+.|+|++|++++..|       +
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            77777777777654  23333  3333 56777666                 2467777777777765332       4


Q ss_pred             ccccccccccccCCC-----CCCcEEEccCCCCCCCCC
Q 007860          549 DLMSLSAKRNRYQRQ-----KSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       549 ~L~~L~l~~N~i~~l-----~~L~~L~Ls~N~l~~~P~  581 (587)
                      +|+.|++++|+|+..     ++|+.|+|++|+|+++|.
T Consensus       254 ~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          254 QLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             TCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCC
T ss_pred             CCCEEECCCCccChhhhhccCCceEEECCCCCCCCChh
Confidence            566677777776332     356777777777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=5.6e-16  Score=158.19  Aligned_cols=153  Identities=20%  Similarity=0.165  Sum_probs=99.2

Q ss_pred             ceeEEEEEcCCCCCcccCc----hhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc--C--CccccC
Q 007860          423 AVVISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--I--PDSLTS  493 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p----~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~--i--P~~l~~  493 (587)
                      +..|+.|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..|..+.. ++|++|+|++|++.+.  +  +..++.
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  195 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK  195 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence            4568889999999887655    44567889999999999998777777877 8999999999988652  2  233467


Q ss_pred             CCCCCEEEccCCcCcccCchh---hhhcccCCceeecc--------------c---cccceEECCCCccccccc----cc
Q 007860          494 SSKLQLVLLNNNLLEGRVPEE---LYSIGVHGGAFDLS--------------V---VYICCIRRGRNDYDFGLP----QD  549 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~---l~~~~~~L~~l~Ls--------------l---~~L~~L~L~~N~l~~~~p----~~  549 (587)
                      +++|++|+|++|+++ .++..   +.....+|+.|+|+              +   .+|++|+|++|+++ .+|    +.
T Consensus       196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~  273 (310)
T 4glp_A          196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAK  273 (310)
T ss_dssp             SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSC
T ss_pred             CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCC
Confidence            888999999999987 34442   22222345666555              1   24555555555554 333    34


Q ss_pred             cccccccccccC------CCCCCcEEEccCCCCC
Q 007860          550 LMSLSAKRNRYQ------RQKSLMLLEMESQHAK  577 (587)
Q Consensus       550 L~~L~l~~N~i~------~l~~L~~L~Ls~N~l~  577 (587)
                      |+.|+|++|+|.      .+++|+.|+|++|+|+
T Consensus       274 L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          274 LRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             CCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence            455555555542      2344555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=3.3e-15  Score=151.17  Aligned_cols=147  Identities=22%  Similarity=0.189  Sum_probs=113.3

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..++.|+|++|.+++..+..+..+++|+.|+|++|.+++ ++.. .. ++|++|+|++|+++ .+|..+..+++|+.|+|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            468899999999998888999999999999999999994 4544 55 99999999999999 88999999999999999


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcE
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLML  568 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~  568 (587)
                      ++|++++..|..+..+.           +|+.|+|++|++++..+      +.|+.|+|++|+|        ..+++|+.
T Consensus       108 ~~N~l~~l~~~~~~~l~-----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  176 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLG-----------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (290)
T ss_dssp             CSSCCCCCCSSTTTTCT-----------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCcCcccCHHHHcCCC-----------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence            99999953334455443           35555666666653211      3466666777765        34667888


Q ss_pred             EEccCCCCCCCCCCCC
Q 007860          569 LEMESQHAKGLPTLPL  584 (587)
Q Consensus       569 L~Ls~N~l~~~P~~~~  584 (587)
                      |+|++|+|+.+|....
T Consensus       177 L~L~~N~l~~ip~~~~  192 (290)
T 1p9a_G          177 LLLQENSLYTIPKGFF  192 (290)
T ss_dssp             EECCSSCCCCCCTTTT
T ss_pred             EECCCCcCCccChhhc
Confidence            8888888888776543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=1.4e-15  Score=144.16  Aligned_cols=135  Identities=17%  Similarity=0.253  Sum_probs=114.0

Q ss_pred             CCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCch-hhcCCCCCCEEEccCCCCCCCCCCCCCC-CCcc
Q 007860          402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV  474 (587)
Q Consensus       402 c~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~  474 (587)
                      |...|.|.|..+.|.......     ...++.|+|++|.+++..+. .+..+++|+.|+|++|.+++..|..+.. ++|+
T Consensus         2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A            2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            666667999999998665322     23688999999999977665 4899999999999999999888999998 9999


Q ss_pred             EEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc
Q 007860          475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP  547 (587)
Q Consensus       475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p  547 (587)
                      +|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+           .+|+.|+|++|++++..+
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL-----------NSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC-----------TTCCEEECTTCCBCCSGG
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC-----------CCCCEEEeCCCCccCcCc
Confidence            99999999998888889999999999999999998777766554           357788888999987544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=3.9e-16  Score=170.71  Aligned_cols=90  Identities=19%  Similarity=0.217  Sum_probs=71.8

Q ss_pred             cCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------------ccccceEECCCCccccccc-------c
Q 007860          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------------VVYICCIRRGRNDYDFGLP-------Q  548 (587)
Q Consensus       492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------------l~~L~~L~L~~N~l~~~~p-------~  548 (587)
                      ..+++|++|++++|++++.+|..+..+. +|+.|+++                +.+|+.|+|++|++++.+|       +
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            5678888999999999877887777766 58888887                5678889999999886455       4


Q ss_pred             ccccccccccccC-----CC-CCCcEEEccCCCCCCCCCC
Q 007860          549 DLMSLSAKRNRYQ-----RQ-KSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       549 ~L~~L~l~~N~i~-----~l-~~L~~L~Ls~N~l~~~P~~  582 (587)
                      .|+.|++++|++.     .+ ++|+.|+|++|+|+.+|..
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~  439 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQ  439 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGG
T ss_pred             cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchh
Confidence            6788889999883     23 6899999999999988864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=1.5e-15  Score=167.09  Aligned_cols=109  Identities=24%  Similarity=0.259  Sum_probs=63.4

Q ss_pred             CCccEEeccCCcCCccCCc---cccCCCCCCEEEccCCcCcccCc---hhhhhcccCCceeecc-------------ccc
Q 007860          471 QSLVRLDLSDNQFTGSIPD---SLTSSSKLQLVLLNNNLLEGRVP---EELYSIGVHGGAFDLS-------------VVY  531 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~---~l~~l~~L~~L~Ls~N~l~g~ip---~~l~~~~~~L~~l~Ls-------------l~~  531 (587)
                      ++|++|++++|++++.+|.   .++.+++|+.|+|++|++++ ++   ..+..+. +|+.|+++             +.+
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLK-NLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCT-TCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCC-CCCEEECCCCCCccCChhhccccc
Confidence            5566666666666655432   24555666666666666653 33   1233333 46666665             345


Q ss_pred             cceEECCCCcccc---ccccccccccccccccC----CCCCCcEEEccCCCCCCCCC
Q 007860          532 ICCIRRGRNDYDF---GLPQDLMSLSAKRNRYQ----RQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       532 L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i~----~l~~L~~L~Ls~N~l~~~P~  581 (587)
                      |+.|+|++|+++.   .+|+.|+.|++++|+|.    .+++|++|+|++|+|+.+|.
T Consensus       412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~  468 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD  468 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred             ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence            6666666666642   23456666666666663    56667777777777776665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=4.6e-15  Score=148.58  Aligned_cols=150  Identities=18%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc-cCCccccCCCCCCEEE
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQLVL  501 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~  501 (587)
                      +.|+.|+|++|.+++..+..+.++++|+.|++++|.+.+..+..+.. ++|++|++++|++++ .+|..++.+++|+.|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence            44566666666666555556666666666666666666444444555 666666666666654 2466666666666666


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc-----ccccccccccccc--------CCCCCCcE
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY--------QRQKSLML  568 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i--------~~l~~L~~  568 (587)
                      |++|++++..+..+..+. .|+.+.+      .|+|++|++++..+     ..|+.|++++|+|        ..+.+|+.
T Consensus       156 Ls~N~l~~~~~~~~~~l~-~L~~l~l------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  228 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLH-QMPLLNL------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK  228 (276)
T ss_dssp             CCSSCCCEECGGGGHHHH-TCTTCCE------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred             CCCCCCCcCCHHHhhhhh-hccccce------eeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccE
Confidence            666666543333444333 1221111      57888888874322     2578888888876        56788999


Q ss_pred             EEccCCCCCCCC
Q 007860          569 LEMESQHAKGLP  580 (587)
Q Consensus       569 L~Ls~N~l~~~P  580 (587)
                      |+|++|++++-.
T Consensus       229 L~l~~N~~~c~c  240 (276)
T 2z62_A          229 IWLHTNPWDCSC  240 (276)
T ss_dssp             EECCSSCBCCCT
T ss_pred             EEccCCcccccC
Confidence            999999998653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=4.7e-15  Score=146.56  Aligned_cols=154  Identities=18%  Similarity=0.249  Sum_probs=125.1

Q ss_pred             cCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc
Q 007860          408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS  486 (587)
Q Consensus       408 ~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~  486 (587)
                      +.|.|..|...       .+.++++++.++ .+|..+.  ++|+.|+|++|.+++..+..+.. ++|++|+|++|++++.
T Consensus         5 p~~~gC~C~~~-------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   74 (251)
T 3m19_A            5 ETVTGCTCNEG-------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL   74 (251)
T ss_dssp             HHHHSSEEEGG-------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCceEcCCC-------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc
Confidence            57888889532       346999999998 5676554  68999999999999888878888 9999999999999988


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCchh-hhhcccCCceeeccccccceEECCCCcccccc------ccccccccccccc
Q 007860          487 IPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGL------PQDLMSLSAKRNR  559 (587)
Q Consensus       487 iP~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~------p~~L~~L~l~~N~  559 (587)
                      .|..+..+++|+.|+|++|++++ +|.. +..+           .+|+.|+|++|++++..      .+.|+.|+|++|+
T Consensus        75 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A           75 SAGVFDDLTELGTLGLANNQLAS-LPLGVFDHL-----------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTC-----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CHhHhccCCcCCEEECCCCcccc-cChhHhccc-----------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence            88889999999999999999995 5543 3333           34667777788877422      2468888999998


Q ss_pred             c--------CCCCCCcEEEccCCCCCCCCCCC
Q 007860          560 Y--------QRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       560 i--------~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      |        ..+++|+.|+|++|+|+++|...
T Consensus       143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A          143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence            7        46788999999999999999754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=8.7e-16  Score=169.82  Aligned_cols=92  Identities=11%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             cCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------------ccccceEECCCCccccccc-------c
Q 007860          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------------VVYICCIRRGRNDYDFGLP-------Q  548 (587)
Q Consensus       492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------------l~~L~~L~L~~N~l~~~~p-------~  548 (587)
                      +.+++|+.|++++|++++.+|..+..+. +|+.|+|+                +.+|+.|+|++|++++.+|       +
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            3445555555555555554555554443 35555554                4568889999999986455       5


Q ss_pred             ccccccccccccC-----CC-CCCcEEEccCCCCCCCCCCCC
Q 007860          549 DLMSLSAKRNRYQ-----RQ-KSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       549 ~L~~L~l~~N~i~-----~l-~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      .|+.|++++|+|.     .+ ++|+.|+|++|+|+.+|....
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~  470 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT  470 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTT
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhc
Confidence            6888899999983     34 689999999999999997543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=2.6e-15  Score=156.07  Aligned_cols=180  Identities=14%  Similarity=0.174  Sum_probs=137.1

Q ss_pred             CCCC-CCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCC-CC-CCc
Q 007860          402 CAPT-NWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSL  473 (587)
Q Consensus       402 c~~~-~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-~~-~~L  473 (587)
                      |.+. |.|.+..+.|......     .+..++.|+|++|+|+...+..|.+|++|++|+|++|++.+.+|... .. +++
T Consensus         2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X            2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            5543 6689999999865422     23468999999999996666789999999999999999987787654 45 666


Q ss_pred             c-EEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCch-hhhhcccCCceeecc----------------ccccceE
Q 007860          474 V-RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFDLS----------------VVYICCI  535 (587)
Q Consensus       474 ~-~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~~~~~L~~l~Ls----------------l~~L~~L  535 (587)
                      + .+.++.|+++...|..+..+++|+.|++++|++.+ +|. .+.... .+..+++.                ...++.|
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~-~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L  159 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSL-QKVLLDIQDNINIHTIERNSFVGLSFESVIL  159 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             hhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccc-hhhhhhhccccccccccccchhhcchhhhhh
Confidence            5 56778899997778889999999999999999984 554 333322 35555553                2357889


Q ss_pred             ECCCCcccccccc------ccccccccc-ccc--------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860          536 RRGRNDYDFGLPQ------DLMSLSAKR-NRY--------QRQKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       536 ~L~~N~l~~~~p~------~L~~L~l~~-N~i--------~~l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      +|++|+++ .+|.      .+..|++++ |++        .++++|+.|+|++|+|+.+|...+
T Consensus       160 ~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             ECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             cccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            99999998 4553      466677764 544        567889999999999999998654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.58  E-value=1.1e-14  Score=149.60  Aligned_cols=155  Identities=14%  Similarity=0.214  Sum_probs=114.4

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCC--ccCCccccCCCCCCE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT--GSIPDSLTSSSKLQL  499 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~--g~iP~~l~~l~~L~~  499 (587)
                      ++.|+.|+|++|.++ .+|..+.  ++|+.|++++|.+++..+..+.. ++|++|++++|++.  +..+..+..+++|+.
T Consensus        99 l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A           99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            345666666666665 3444333  56666666666666444444566 78888888888875  366777888888888


Q ss_pred             EEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------cccccccccccc
Q 007860          500 VLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNR  559 (587)
Q Consensus       500 L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~  559 (587)
                      |++++|.+. .+|..+.   .+|+.|+++              +.+|+.|+|++|++++..+      +.|+.|++++|+
T Consensus       176 L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          176 IRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             EECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             EECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            888888887 5776554   468888887              5689999999999985433      468888999998


Q ss_pred             c-------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860          560 Y-------QRQKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       560 i-------~~l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      |       ..+++|+.|+|++|+|+++|...+
T Consensus       252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            7       456789999999999999997654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.58  E-value=9.1e-15  Score=162.86  Aligned_cols=118  Identities=14%  Similarity=0.037  Sum_probs=82.5

Q ss_pred             ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcC
Q 007860          410 WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF  483 (587)
Q Consensus       410 ~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l  483 (587)
                      +..+.|......     ....++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..+.. ++|++|+|++|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            345666544321     2235778888888888777778888888888888888888777777777 8888888888888


Q ss_pred             CccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860          484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       484 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls  528 (587)
                      ++..|..++.+++|++|++++|++++..|..+..+. +|+.|+++
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~  137 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLG  137 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECC
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCC-cccEEECC
Confidence            777777777777777777777777743344444443 35666555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=8.8e-15  Score=150.68  Aligned_cols=155  Identities=19%  Similarity=0.242  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      .|+.|+|++|.+++..|..+..+++|++|+|++|.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++
T Consensus        79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A           79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred             CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence            3555666666666555666666666666666666665 4554433 5555555555555533333455555555555555


Q ss_pred             CcCc--c----------------------cCchhhhhcccCCceeecc--------------ccccceEECCCCcccccc
Q 007860          505 NLLE--G----------------------RVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGL  546 (587)
Q Consensus       505 N~l~--g----------------------~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~  546 (587)
                      |.+.  +                      .+|..+.   .+|+.|+++              +.+|+.|+|++|++++..
T Consensus       157 n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             CccccCCCCcccccCCccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            5553  1                      2343322   357777776              568999999999998643


Q ss_pred             c------ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860          547 P------QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       547 p------~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      +      +.|+.|++++|+|       ..+++|+.|+|++|+|+++|...+
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            3      4688889999987       466789999999999999987644

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.57  E-value=1.4e-14  Score=152.61  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=129.5

Q ss_pred             CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCC
Q 007860          421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ  498 (587)
Q Consensus       421 ~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  498 (587)
                      ..+..|+.|+|++|.+.+..|..+..+++|++|+|++|.++ .+|.. +.. ++|++|++++|++++..|..++.+++|+
T Consensus        90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            34567899999999999888888999999999999999999 66666 466 9999999999999987788899999999


Q ss_pred             EEEccCCcCcccCchhhhhcccCCceeecc---------ccccceEECCCCcccc---cccccccccccccccc------
Q 007860          499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------VVYICCIRRGRNDYDF---GLPQDLMSLSAKRNRY------  560 (587)
Q Consensus       499 ~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------l~~L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i------  560 (587)
                      .|++++|++++ ++  +..+. .|+.++++         ...|+.|++++|++..   ..+.+|+.|++++|++      
T Consensus       169 ~L~l~~n~l~~-~~--~~~l~-~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l  244 (390)
T 3o6n_A          169 NLQLSSNRLTH-VD--LSLIP-SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL  244 (390)
T ss_dssp             EEECCSSCCSB-CC--GGGCT-TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG
T ss_pred             EEECCCCcCCc-cc--ccccc-ccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH
Confidence            99999999985 43  33333 57888877         3468889999998863   2346799999999987      


Q ss_pred             CCCCCCcEEEccCCCCCCCCC
Q 007860          561 QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       561 ~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                      ..+++|++|+|++|++++++.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~  265 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMY  265 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEES
T ss_pred             cCCCCccEEECCCCcCCCcCh
Confidence            567899999999999988743

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.57  E-value=1.9e-14  Score=151.45  Aligned_cols=133  Identities=15%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             eeeEeecCCccEEEEEcccc-hhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860          335 HYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~-~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv  413 (587)
                      .++.+.++++.+. .+|+.. ..  +..++.+.+..+.+..+++..  +..++..   . ..+..+        +...++
T Consensus        46 ~l~~l~l~~~~l~-~l~~~~~~~--l~~L~~L~L~~n~i~~~~~~~--~~~l~~L---~-~L~L~~--------n~l~~~  108 (390)
T 3o6n_A           46 NQKIVTFKNSTMR-KLPAALLDS--FRQVELLNLNDLQIEEIDTYA--FAYAHTI---Q-KLYMGF--------NAIRYL  108 (390)
T ss_dssp             CCSEEEEESCEES-EECTHHHHH--CCCCSEEECTTSCCCEECTTT--TTTCTTC---C-EEECCS--------SCCCCC
T ss_pred             CceEEEecCCchh-hCChhHhcc--cccCcEEECCCCcccccChhh--ccCCCCc---C-EEECCC--------CCCCcC
Confidence            4556667777766 566543 33  667888888877776665431  1111100   0 001111        111111


Q ss_pred             eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc
Q 007860          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS  486 (587)
Q Consensus       414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~  486 (587)
                      .  +.....++.|+.|+|++|.++...+..+..+++|++|+|++|.+.+..|..+.. ++|++|++++|++++.
T Consensus       109 ~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          109 P--PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             C--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             C--HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            1  111234567999999999999555555799999999999999999777777888 9999999999999853

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.57  E-value=4.1e-15  Score=151.21  Aligned_cols=156  Identities=17%  Similarity=0.189  Sum_probs=132.3

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCC-CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      +..|+.|+|++|.+. .+|..+..+++|+.|++++|.+++..+ ..+.. ++|++|++++|++++..|..+..+++|+.|
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            356899999999998 577789999999999999999995544 46667 999999999999998899999999999999


Q ss_pred             EccCCcCcc-cCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------cccccccccccc
Q 007860          501 LLNNNLLEG-RVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNR  559 (587)
Q Consensus       501 ~Ls~N~l~g-~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~  559 (587)
                      ++++|.+.+ .+|..+..+. +|+.|+++              +.+|+.|+|++|++++..+      +.|+.|++++|+
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             ECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            999999986 4677777665 69999988              5689999999999985322      568899999998


Q ss_pred             cC--------CC-CCCcEEEccCCCCCCCC
Q 007860          560 YQ--------RQ-KSLMLLEMESQHAKGLP  580 (587)
Q Consensus       560 i~--------~l-~~L~~L~Ls~N~l~~~P  580 (587)
                      |.        .+ .+|+.|+|++|++++-.
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            83        34 48999999999998653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=1.7e-14  Score=160.78  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=129.8

Q ss_pred             CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCC
Q 007860          421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ  498 (587)
Q Consensus       421 ~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  498 (587)
                      ..+..|+.|+|++|.+++..|..++.+++|+.|+|++|.++ .+|.. +.. ++|++|+|++|++++..|..++.+++|+
T Consensus        96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            34567899999999999988888999999999999999999 55555 567 9999999999999988888899999999


Q ss_pred             EEEccCCcCcccCchhhhhcccCCceeecc---------ccccceEECCCCcccc---cccccccccccccccc------
Q 007860          499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------VVYICCIRRGRNDYDF---GLPQDLMSLSAKRNRY------  560 (587)
Q Consensus       499 ~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------l~~L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i------  560 (587)
                      .|+|++|.+.+ ++  +..+. .|+.|+++         ...|+.|++++|.+..   .++.+|..|+|++|.|      
T Consensus       175 ~L~L~~N~l~~-~~--~~~l~-~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l  250 (597)
T 3oja_B          175 NLQLSSNRLTH-VD--LSLIP-SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL  250 (597)
T ss_dssp             EEECTTSCCSB-CC--GGGCT-TCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGG
T ss_pred             EEECcCCCCCC-cC--hhhhh-hhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhh
Confidence            99999999985 44  33333 57888777         4467889999998863   3557899999999987      


Q ss_pred             CCCCCCcEEEccCCCCCCCCC
Q 007860          561 QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       561 ~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                      ..++.|+.|+|++|+|++++.
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~  271 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMY  271 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEES
T ss_pred             ccCCCCCEEECCCCccCCCCH
Confidence            567899999999999998754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=2.1e-14  Score=160.00  Aligned_cols=151  Identities=17%  Similarity=0.160  Sum_probs=95.0

Q ss_pred             eeeEeecCCccEEEEEcccc-hhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860          335 HYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~-~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv  413 (587)
                      .+..+.++++.+. .+|+.. ..  +..++.+.+..+.+..+++..  +..++..   . ..+..+        +...++
T Consensus        52 ~l~~l~l~~~~l~-~lp~~~~~~--l~~L~~L~L~~n~l~~~~~~~--~~~l~~L---~-~L~L~~--------n~l~~~  114 (597)
T 3oja_B           52 NQKIVTFKNSTMR-KLPAALLDS--FRQVELLNLNDLQIEEIDTYA--FAYAHTI---Q-KLYMGF--------NAIRYL  114 (597)
T ss_dssp             CCSEEEESSCEES-EECTHHHHH--CCCCSEEECTTSCCCEECTTT--TTTCTTC---C-EEECCS--------SCCCCC
T ss_pred             CceEEEeeCCCCC-CcCHHHHcc--CCCCcEEECCCCCCCCCChHH--hcCCCCC---C-EEECCC--------CcCCCC
Confidence            3455667777766 566543 33  667788888777766655431  1111100   0 001111        111221


Q ss_pred             eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc
Q 007860          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (587)
Q Consensus       414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~  492 (587)
                      .  +.....++.|+.|+|++|.+++..+..++.+++|+.|+|++|.+++..|..+.. ++|++|+|++|++++. +  ++
T Consensus       115 ~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~  189 (597)
T 3oja_B          115 P--PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LS  189 (597)
T ss_dssp             C--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GG
T ss_pred             C--HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hh
Confidence            1  111234567999999999999766666799999999999999999888888988 9999999999999964 3  33


Q ss_pred             CCCCCCEEEccCCcC
Q 007860          493 SSSKLQLVLLNNNLL  507 (587)
Q Consensus       493 ~l~~L~~L~Ls~N~l  507 (587)
                      .+++|+.|++++|.+
T Consensus       190 ~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          190 LIPSLFHANVSYNLL  204 (597)
T ss_dssp             GCTTCSEEECCSSCC
T ss_pred             hhhhhhhhhcccCcc
Confidence            344444444444333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=4.2e-15  Score=172.29  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCCcccCc-hhhcCCCCCCEEEccCCCCCCCCCCCCCC---CCccEEeccCCcCCccCCcccc
Q 007860          425 VISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDNQFTGSIPDSLT  492 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~---~~L~~L~Ls~N~l~g~iP~~l~  492 (587)
                      .|+.|+|++|.+.+..+ ..+++|++|+.|+|++|.+++..|..+..   ++|+.|+++.|.+.+..|..++
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~  195 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG  195 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence            45555555555554433 34555555555555555555444444332   3444444444444444443333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.56  E-value=1.3e-14  Score=164.02  Aligned_cols=84  Identities=18%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+.. ++|++|+|++|++++..+..++.+++|++|+|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            3455555555555444444555555555555555555444444444 444444444444442222234444444444444


Q ss_pred             CCcCc
Q 007860          504 NNLLE  508 (587)
Q Consensus       504 ~N~l~  508 (587)
                      +|++.
T Consensus       106 ~n~l~  110 (680)
T 1ziw_A          106 SNSIQ  110 (680)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            44444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=2.1e-14  Score=154.42  Aligned_cols=212  Identities=14%  Similarity=0.104  Sum_probs=134.0

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchH-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~-~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv  413 (587)
                      .++.+++++|.+....+.....  +..++.+.+..+.+..++. .+..+..|+......+               ....+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n---------------~l~~~  138 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRH--LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN---------------WLTVI  138 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS---------------CCSBC
T ss_pred             CccEEECcCCcCceECHHHcCC--CCCCCEEECCCCccCCcChhhccCcccCCEEECCCC---------------cCCcc
Confidence            4566777777777444444544  6667777776666554432 2222222222111110               00100


Q ss_pred             eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccc
Q 007860          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSL  491 (587)
Q Consensus       414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l  491 (587)
                      .  ......++.|+.|+|++|.+....+..+..+++|+.|+|++|+..+.++.. +.. ++|++|+|++|+++ .+| .+
T Consensus       139 ~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~  214 (452)
T 3zyi_A          139 P--SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NL  214 (452)
T ss_dssp             C--TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CC
T ss_pred             C--hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cc
Confidence            0  001122346788888888888777778888888888888885544466654 555 88999999999888 455 47


Q ss_pred             cCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc-----
Q 007860          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY-----  560 (587)
Q Consensus       492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i-----  560 (587)
                      ..+++|+.|+|++|++.+..|..+..+.           +|+.|+|++|++++..|      ++|+.|+|++|+|     
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLS-----------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCT-----------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccccEEECcCCcCcccCcccccCcc-----------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence            8888899999999988876666666544           35556666666654322      4567777777766     


Q ss_pred             ---CCCCCCcEEEccCCCCCC
Q 007860          561 ---QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       561 ---~~l~~L~~L~Ls~N~l~~  578 (587)
                         ..+++|+.|+|++|.+..
T Consensus       284 ~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TSSTTCTTCCEEECCSSCEEC
T ss_pred             HHhccccCCCEEEccCCCcCC
Confidence               456788999999987653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.55  E-value=1.1e-14  Score=164.46  Aligned_cols=227  Identities=19%  Similarity=0.151  Sum_probs=154.9

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCc-hHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~-p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv  413 (587)
                      .++.+++++|.+....+.....  +..++.+.+..+.+..+ |..+..+..++......+.  ..+-|            
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~------------   89 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE--LSQLS------------   89 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC--CCCCC------------
T ss_pred             CCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc--cCccC------------
Confidence            5677888888877432333444  66778888877776554 4444555444432211110  01100            


Q ss_pred             eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc
Q 007860          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (587)
Q Consensus       414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~  492 (587)
                         ......+.+|++|+|++|.+.+..|..++++++|++|+|++|.+++..|..+.. ++|++|++++|++++..|..+.
T Consensus        90 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  166 (680)
T 1ziw_A           90 ---DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD  166 (680)
T ss_dssp             ---TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred             ---hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence               001123356889999999999877788999999999999999999888888888 9999999999999976666554


Q ss_pred             --CCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-----------------ccccceEECCCCccccccc------
Q 007860          493 --SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-----------------VVYICCIRRGRNDYDFGLP------  547 (587)
Q Consensus       493 --~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~l~~~~p------  547 (587)
                        .+++|+.|++++|++.+..|..+..+. .|+.++++                 ..+|+.|+|++|.+++..|      
T Consensus       167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l  245 (680)
T 1ziw_A          167 IFANSSLKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL  245 (680)
T ss_dssp             GGTTCEESEEECTTCCCCCBCTTGGGGSS-EECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred             ccccccccEEECCCCcccccChhhhhhhh-hhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence              568999999999999876676666654 36666554                 2467777777777765433      


Q ss_pred             --ccccccccccccc--------CCCCCCcEEEccCCCCCCCCC
Q 007860          548 --QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       548 --~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                        .+|+.|++++|++        ..+.+|+.|+|++|++++++.
T Consensus       246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (680)
T 1ziw_A          246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS  289 (680)
T ss_dssp             GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred             CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence              1266777777755        456677777777777766554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.55  E-value=3.1e-14  Score=142.39  Aligned_cols=83  Identities=23%  Similarity=0.278  Sum_probs=48.8

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|+|++|.+.+.  +.+..+++|++|+|++|.+++..+..+.. ++|++|+|++|++++..|..++.+++|+.|+++
T Consensus        64 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             TCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence            455666666666542  35566666666666666666444444455 666666666666664444445666666666666


Q ss_pred             CCcCcc
Q 007860          504 NNLLEG  509 (587)
Q Consensus       504 ~N~l~g  509 (587)
                      +|++++
T Consensus       142 ~n~l~~  147 (272)
T 3rfs_A          142 HNQLQS  147 (272)
T ss_dssp             SSCCCC
T ss_pred             CCccCc
Confidence            666653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.55  E-value=6.8e-15  Score=152.85  Aligned_cols=160  Identities=20%  Similarity=0.193  Sum_probs=125.1

Q ss_pred             CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC--CCCC-CCccEEeccCCc-CCccCCccccCCCCC
Q 007860          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSSSKL  497 (587)
Q Consensus       422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~-~~L~~L~Ls~N~-l~g~iP~~l~~l~~L  497 (587)
                      .+..|+.|+|++|.+++..+..+..+++|++|+|++|+++ .+|.  .+.. ++|++|++++|+ +.+..|..++.+++|
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  176 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL  176 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence            4467889999999998766666899999999999999998 5665  5666 999999999984 665556788899999


Q ss_pred             CEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc---------ccccccc
Q 007860          498 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP---------QDLMSLS  554 (587)
Q Consensus       498 ~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p---------~~L~~L~  554 (587)
                      +.|++++|++.+..|..+..+. +|+.|+++              +.+|+.|+|++|++++..+         ..++.++
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred             CEEECCCCCcCccCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence            9999999999877787777766 58888876              4678888998888875322         2344455


Q ss_pred             cccccc------------CCCCCCcEEEccCCCCCCCCCCC
Q 007860          555 AKRNRY------------QRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       555 l~~N~i------------~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      ++++.+            ..+++|+.|+|++|+|+.+|...
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~  296 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI  296 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH
Confidence            555544            46788999999999999998764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=5e-15  Score=159.46  Aligned_cols=144  Identities=28%  Similarity=0.357  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|++++|.+++ ++..   .++|++|++++|++++ +| .++. ++|++|++++|++++ +|..+   .+|+.|+++
T Consensus       112 ~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~  181 (454)
T 1jl5_A          112 SLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAG  181 (454)
T ss_dssp             TCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECC
T ss_pred             CCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECc
Confidence            34555555555543 1211   1456666666666663 55 3555 666666666666663 55433   356666666


Q ss_pred             CCcCcccCchhhhhcccCCceeecc----------ccccceEECCCCccccccc-----cccccccccccccCC----CC
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLS----------VVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRYQR----QK  564 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Ls----------l~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i~~----l~  564 (587)
                      +|++++ +| .+..+. +|+.|+++          ..+|+.|++++|+++ .+|     +.|+.|++++|++..    +.
T Consensus       182 ~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~~~~  257 (454)
T 1jl5_A          182 NNQLEE-LP-ELQNLP-FLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPDLPP  257 (454)
T ss_dssp             SSCCSS-CC-CCTTCT-TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCSCCT
T ss_pred             CCcCCc-Cc-cccCCC-CCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCccccccc
Confidence            666664 55 344444 46666655          124566666666665 444     345556666666633    34


Q ss_pred             CCcEEEccCCCCCCCCCC
Q 007860          565 SLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       565 ~L~~L~Ls~N~l~~~P~~  582 (587)
                      +|+.|++++|+++++|..
T Consensus       258 ~L~~L~l~~N~l~~l~~~  275 (454)
T 1jl5_A          258 SLEALNVRDNYLTDLPEL  275 (454)
T ss_dssp             TCCEEECCSSCCSCCCCC
T ss_pred             ccCEEECCCCcccccCcc
Confidence            566666666666666643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=7.3e-15  Score=149.87  Aligned_cols=156  Identities=15%  Similarity=0.083  Sum_probs=128.5

Q ss_pred             EEEEEcCCCCCcccCchhh--cCCCCCCEEEccCCCCCCCCCC----CCCC-CCccEEeccCCcCCccCCccccCCCCCC
Q 007860          426 ISQIDLGSQGLKGYISDKI--SLLSNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ  498 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~----~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  498 (587)
                      |+.|+|++|.+.+.+|..+  ..+++|+.|+|++|.+++..+.    .+.. ++|++|+|++|++++..|..++.+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            7789999999999999988  9999999999999999976662    2335 8999999999999988888999999999


Q ss_pred             EEEccCCcCccc--Cchhh--hhcccCCceeecc-----------------ccccceEECCCCccccccc---------c
Q 007860          499 LVLLNNNLLEGR--VPEEL--YSIGVHGGAFDLS-----------------VVYICCIRRGRNDYDFGLP---------Q  548 (587)
Q Consensus       499 ~L~Ls~N~l~g~--ip~~l--~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~l~~~~p---------~  548 (587)
                      +|+|++|++.+.  ++...  ..+. +|+.|+|+                 +.+|++|+|++|++.+..|         +
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            999999998753  22222  3333 68888887                 3788999999999986544         4


Q ss_pred             ccccccccccccCC-----CCCCcEEEccCCCCCCCCCC
Q 007860          549 DLMSLSAKRNRYQR-----QKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       549 ~L~~L~l~~N~i~~-----l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      .|+.|++++|+|..     .++|+.|+|++|+|+++|..
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~~~  290 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAPQP  290 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCCCT
T ss_pred             cCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCchh
Confidence            78888999999843     35799999999999998764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.54  E-value=1.9e-14  Score=154.95  Aligned_cols=124  Identities=19%  Similarity=0.178  Sum_probs=90.3

Q ss_pred             CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      .++.|+.|++++|.+++ +|  ++.+++|+.|++++|++++.   .++. ++|+.|++++|++++ +|  ++.+++|+.|
T Consensus       168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L  238 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF  238 (457)
T ss_dssp             TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred             cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence            34568899999999987 44  88999999999999999964   3667 999999999999996 77  8899999999


Q ss_pred             EccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc----ccccccccccc
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRN  558 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N  558 (587)
                      ++++|++++ +|  +..+. .|+.|+++.++|+.|++++|++.+.+|    +.|+.|++++|
T Consensus       239 ~l~~N~l~~-~~--~~~l~-~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          239 DCSVNPLTE-LD--VSTLS-KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN  296 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCT-TCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred             EeeCCcCCC-cC--HHHCC-CCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCC
Confidence            999999986 44  22332 466666665555555555555544443    33444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.53  E-value=2.4e-14  Score=159.40  Aligned_cols=153  Identities=18%  Similarity=0.107  Sum_probs=113.2

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..+.. ++|++|+|++|++++..|..++.+++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            46888999999999888888999999999999999999777878888 99999999999999777888999999999999


Q ss_pred             cCCcCcccCchhhhhcccCCceeecc---------------ccccceEECCCCccccccccc----------cccccccc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLPQD----------LMSLSAKR  557 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p~~----------L~~L~l~~  557 (587)
                      ++|++.+..+..++.+. +|+.|+++               +.+|++|+|++|++++..|..          +..|++++
T Consensus       112 ~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          112 VETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             TTSCCCCSSSSCCTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             cCCccccccccccCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999854446666655 46666665               345666666666666433321          22455666


Q ss_pred             cccC-------CCCCCcEEEccCCCCC
Q 007860          558 NRYQ-------RQKSLMLLEMESQHAK  577 (587)
Q Consensus       558 N~i~-------~l~~L~~L~Ls~N~l~  577 (587)
                      |++.       ...+|+.|++++|.++
T Consensus       191 n~l~~~~~~~~~~~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          191 NPIDFIQDQAFQGIKLHELTLRGNFNS  217 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred             CCcceeCcccccCceeeeeeccCCccc
Confidence            6552       1225666666666553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.53  E-value=1.6e-14  Score=160.91  Aligned_cols=145  Identities=14%  Similarity=0.138  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCC-CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      .|+.|+|++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+.. ++|++|++++|++++..|..++.+++|+.|++
T Consensus       377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  455 (606)
T 3vq2_A          377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM  455 (606)
T ss_dssp             CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence            45555555555543 33445555555555555555554444 33444 55555555555555555555555555555555


Q ss_pred             cCCcCccc-CchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc--------CCCCCCc
Q 007860          503 NNNLLEGR-VPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLM  567 (587)
Q Consensus       503 s~N~l~g~-ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~  567 (587)
                      ++|++.+. +|..+..+           .+|+.|+|++|++++..|      +.|+.|++++|++        ..+++|+
T Consensus       456 ~~n~l~~~~~~~~~~~l-----------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          456 AGNSFKDNTLSNVFANT-----------TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             TTCEEGGGEECSCCTTC-----------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             CCCcCCCcchHHhhccC-----------CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence            55555542 34434433           334444444444443222      2344444444443        2344455


Q ss_pred             EEEccCCCCCCCCC
Q 007860          568 LLEMESQHAKGLPT  581 (587)
Q Consensus       568 ~L~Ls~N~l~~~P~  581 (587)
                      .|+|++|+|+.+|.
T Consensus       525 ~L~l~~N~l~~~p~  538 (606)
T 3vq2_A          525 TLDCSFNRIETSKG  538 (606)
T ss_dssp             EEECTTSCCCCEES
T ss_pred             EEECCCCcCcccCH
Confidence            55555555554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=3.1e-14  Score=145.25  Aligned_cols=150  Identities=19%  Similarity=0.330  Sum_probs=99.0

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      +.|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++ ++ .+.. ++|++|++++|++++ +|. +..+++|+.|++
T Consensus        63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            346667777777664333  6677777777777777663 33 4555 667777777777763 443 666677777777


Q ss_pred             cCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc------
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------  560 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------  560 (587)
                      ++|++++ ++. +..+. +|+.|+++            +.+|+.|+|++|++++..+    +.|+.|++++|+|      
T Consensus       137 ~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l  213 (308)
T 1h6u_A          137 DLNQITN-ISP-LAGLT-NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL  213 (308)
T ss_dssp             CSSCCCC-CGG-GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGG
T ss_pred             CCCccCc-Ccc-ccCCC-CccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccc
Confidence            7777763 333 44433 46666655            4567888888888874221    4677788888877      


Q ss_pred             CCCCCCcEEEccCCCCCCCCCC
Q 007860          561 QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       561 ~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      ..+++|+.|+|++|++++.|..
T Consensus       214 ~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          214 ANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             TTCTTCCEEEEEEEEEECCCEE
T ss_pred             cCCCCCCEEEccCCeeecCCee
Confidence            4677888999999988887753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.52  E-value=1.3e-14  Score=148.58  Aligned_cols=103  Identities=21%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-----------------CCC-CCccEEeccCCcCC
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-----------------LGQ-QSLVRLDLSDNQFT  484 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-----------------~~~-~~L~~L~Ls~N~l~  484 (587)
                      ++.|+.|+|++|.+++..+  +..+++|++|+|++|.+++ +|..                 ... ++|++|++++|+++
T Consensus        57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~  133 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT  133 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred             CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence            3468889999998887655  8888888888888888773 2210                 001 34555555555555


Q ss_pred             ccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860          485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       485 g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls  528 (587)
                      +..|..++.+++|+.|+|++|++.+..+..+.....+|+.|+|+
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            44444555555566666666665543344443222235555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.52  E-value=2.5e-14  Score=153.93  Aligned_cols=142  Identities=22%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|++++|.+++ +|..   .++|+.|++++|.++ .+|. ++. ++|++|++++|++++ +|..   +++|+.|+++
T Consensus       196 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  265 (454)
T 1jl5_A          196 FLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVR  265 (454)
T ss_dssp             TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECC
T ss_pred             CCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECC
Confidence            34445555555443 2221   134555555555554 4442 444 555555555555552 3332   2445555555


Q ss_pred             CCcCcccCchhhhhcccCCceeeccc----------cccceEECCCCcccc--ccccccccccccccccCC----CCCCc
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSV----------VYICCIRRGRNDYDF--GLPQDLMSLSAKRNRYQR----QKSLM  567 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl----------~~L~~L~L~~N~l~~--~~p~~L~~L~l~~N~i~~----l~~L~  567 (587)
                      +|++.+ +|..+    .+|+.|+++.          .+|+.|++++|++++  .+|+.|+.|++++|++.+    +.+|+
T Consensus       266 ~N~l~~-l~~~~----~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~  340 (454)
T 1jl5_A          266 DNYLTD-LPELP----QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE  340 (454)
T ss_dssp             SSCCSC-CCCCC----TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred             CCcccc-cCccc----CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCC
Confidence            555542 33321    2344444441          234445555555543  233455555555555532    34555


Q ss_pred             EEEccCCCCCCCCC
Q 007860          568 LLEMESQHAKGLPT  581 (587)
Q Consensus       568 ~L~Ls~N~l~~~P~  581 (587)
                      .|+|++|+++++|.
T Consensus       341 ~L~L~~N~l~~lp~  354 (454)
T 1jl5_A          341 RLIASFNHLAEVPE  354 (454)
T ss_dssp             EEECCSSCCSCCCC
T ss_pred             EEECCCCccccccc
Confidence            55665555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=2.3e-14  Score=155.69  Aligned_cols=147  Identities=18%  Similarity=0.106  Sum_probs=81.5

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC---------------C-CCC-CCccEEeccCCcCCc
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS---------------G-LGQ-QSLVRLDLSDNQFTG  485 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~---------------~-~~~-~~L~~L~Ls~N~l~g  485 (587)
                      ++.|+.|+|++|.+++.+|  +..+++|+.|+|++|.+++..+.               . ... ++|+.|+|++|++++
T Consensus        57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~  134 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM  134 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCS
T ss_pred             CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCC
Confidence            3467888888888887665  77888888888877777632111               0 001 445566666666665


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc-
Q 007860          486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY-  560 (587)
Q Consensus       486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i-  560 (587)
                      ..|..++.+++|+.|+|++|.+++..|..++.....|+.|+|+          +|.+++.    ..+.|..|+|++|+| 
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls----------~N~l~~~~~~~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ----------YNFIYDVKGQVVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT----------TSCCCEEECCCCCTTCCEEECCSSCCC
T ss_pred             CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC----------CCccccccccccCCCCCEEECCCCCCC
Confidence            5555566666666666666666655555554222235555444          4444321    123344444555444 


Q ss_pred             ------CCCCCCcEEEccCCCCCCCCC
Q 007860          561 ------QRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       561 ------~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                            ..+.+|+.|+|++|+|+++|.
T Consensus       205 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          205 FMGPEFQSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             EECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCHhHcCCCCccEEEecCCcCcccch
Confidence                  233445555555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.51  E-value=1.5e-14  Score=144.82  Aligned_cols=143  Identities=16%  Similarity=0.106  Sum_probs=88.5

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      +.|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|++|++++|++++..|..++.+++|+.|++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            34677788888777666666777788888888888877555555666 77888888888777555555677778888888


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc-CCCCCCcEEEccCCC
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY-QRQKSLMLLEMESQH  575 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i-~~l~~L~~L~Ls~N~  575 (587)
                      ++|++++..+..+..+           .+|++|+|++|++++..|      +.|+.|++++|.+ ..++.|+.|++..|+
T Consensus       165 ~~n~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~  233 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKL-----------TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  233 (272)
T ss_dssp             CSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             CCCCcCccCHHHhcCC-----------ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHh
Confidence            8887774333323332           235555666666654322      2344444555554 223345555554444


Q ss_pred             CC
Q 007860          576 AK  577 (587)
Q Consensus       576 l~  577 (587)
                      ++
T Consensus       234 ~~  235 (272)
T 3rfs_A          234 HS  235 (272)
T ss_dssp             TG
T ss_pred             CC
Confidence            44

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.51  E-value=3.3e-14  Score=135.09  Aligned_cols=139  Identities=16%  Similarity=0.183  Sum_probs=105.1

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..++.|++++|.+. .+| .+..+++|+.|++++|.++ . ++.+.. ++|++|++++|++++..|..++.+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            45788999999988 556 6889999999999999765 3 346777 89999999999999878888999999999999


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCc-cccccc-----ccccccccccccc------CCCCCCcEEE
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRND-YDFGLP-----QDLMSLSAKRNRY------QRQKSLMLLE  570 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~-l~~~~p-----~~L~~L~l~~N~i------~~l~~L~~L~  570 (587)
                      ++|++++..|..+..+.           +|++|+|++|+ +. .+|     +.|+.|++++|+|      ..+++|+.|+
T Consensus       120 s~n~i~~~~~~~l~~l~-----------~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~  187 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLP-----------KVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLY  187 (197)
T ss_dssp             CSSBCBGGGHHHHTTCS-----------SCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEE
T ss_pred             cCCccCcHhHHHHhhCC-----------CCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEE
Confidence            99999876777676543           35566666665 33 333     4577777888766      5578899999


Q ss_pred             ccCCCCCC
Q 007860          571 MESQHAKG  578 (587)
Q Consensus       571 Ls~N~l~~  578 (587)
                      +++|++.+
T Consensus       188 l~~N~i~~  195 (197)
T 4ezg_A          188 AFSQTIGG  195 (197)
T ss_dssp             ECBC----
T ss_pred             eeCcccCC
Confidence            99998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=6e-14  Score=130.81  Aligned_cols=135  Identities=19%  Similarity=0.278  Sum_probs=107.9

Q ss_pred             CCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccE
Q 007860          402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR  475 (587)
Q Consensus       402 c~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~  475 (587)
                      |...|.|.|.++.|......     ....++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+.. ++|++
T Consensus         1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            44445589999999765432     2346899999999999877778899999999999999999555555677 99999


Q ss_pred             EeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc
Q 007860          476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP  547 (587)
Q Consensus       476 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p  547 (587)
                      |+|++|++++..+..+..+++|+.|+|++|+++ .+|......          +.+|++|+|++|++.+..|
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~----------l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDR----------LTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT----------CTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcC----------CcccCEEEecCCCeeccCc
Confidence            999999999766667899999999999999998 566554321          3357788888999986543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=3e-14  Score=156.90  Aligned_cols=150  Identities=23%  Similarity=0.361  Sum_probs=94.1

Q ss_pred             Cccce-eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc
Q 007860          409 AWEGI-TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS  486 (587)
Q Consensus       409 ~~~gv-~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~  486 (587)
                      .|.++ .|...      +++.|+|++|++++ +|..+  +++|+.|+|++|+|+ .+|   .. ++|++|+|++|+|++ 
T Consensus        49 ~~~~l~~C~~~------~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-  114 (571)
T 3cvr_A           49 AVSLLKECLIN------QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-  114 (571)
T ss_dssp             HHHHHHHHHHT------TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-
T ss_pred             hhhhccccccC------CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-
Confidence            47777 56432      36667777777765 55544  266777777777777 566   33 677777777777774 


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------ccccceEECCCCccccccc---cccccc
Q 007860          487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------VVYICCIRRGRNDYDFGLP---QDLMSL  553 (587)
Q Consensus       487 iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------l~~L~~L~L~~N~l~~~~p---~~L~~L  553 (587)
                      +|. +..  +|+.|+|++|+|++ +|.    ...+|+.|+|+          +.+|+.|+|++|++++ +|   .+|+.|
T Consensus       115 ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L  185 (571)
T 3cvr_A          115 LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPELPESLEAL  185 (571)
T ss_dssp             CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEE
T ss_pred             cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cchhhCCCCEE
Confidence            666 544  67777777777764 665    22346666666          2356677777777663 44   456666


Q ss_pred             cccccccCCCC----CC-------cEEEccCCCCCCCCC
Q 007860          554 SAKRNRYQRQK----SL-------MLLEMESQHAKGLPT  581 (587)
Q Consensus       554 ~l~~N~i~~l~----~L-------~~L~Ls~N~l~~~P~  581 (587)
                      +|++|+|+.+.    +|       +.|+|++|+|+.+|.
T Consensus       186 ~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~  224 (571)
T 3cvr_A          186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE  224 (571)
T ss_dssp             ECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCG
T ss_pred             ECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCH
Confidence            77777665433    35       667777777777665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=1e-13  Score=131.37  Aligned_cols=133  Identities=17%  Similarity=0.233  Sum_probs=108.1

Q ss_pred             CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860          400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (587)
Q Consensus       400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L  473 (587)
                      .+|...|.|.|..+.|......     ....++.|+|++|.|+ .+|..+..+++|+.|+|++|.+++..+..+.. ++|
T Consensus         2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A            2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            4677777788999999765432     2346899999999998 77899999999999999999999777777888 999


Q ss_pred             cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      ++|+|++|++++..|..|..+++|+.|+|++|+|+ .+|...+..          +.+|+.|+|++|++..
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~----------l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFND----------LSALSHLAIGANPLYC  140 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTT----------CTTCCEEECCSSCEEC
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhc----------CccccEEEeCCCCeec
Confidence            99999999999877788999999999999999999 466543321          2356778888888864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.50  E-value=9.9e-14  Score=141.45  Aligned_cols=151  Identities=18%  Similarity=0.295  Sum_probs=125.9

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +..|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++ ++. +.. ++|++|+|++|++++ +| .+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence            3468899999999985 55 68999999999999999994 555 777 999999999999994 55 689999999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc-----
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY-----  560 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i-----  560 (587)
                      +++|++++ ++. +..+. +|+.|+++            +.+|+.|+|++|++++..+    +.|+.|++++|+|     
T Consensus       114 l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          114 LTSTQITD-VTP-LAGLS-NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CTTSCCCC-CGG-GTTCT-TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCCCC-chh-hcCCC-CCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh
Confidence            99999985 654 66655 69999888            5679999999999884221    5688889999987     


Q ss_pred             -CCCCCCcEEEccCCCCCCCCCC
Q 007860          561 -QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       561 -~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                       ..+++|+.|+|++|+++++|..
T Consensus       191 l~~l~~L~~L~L~~N~l~~~~~l  213 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQISDVSPL  213 (308)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGGG
T ss_pred             hcCCCCCCEEEccCCccCccccc
Confidence             4677899999999999988753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=5.8e-14  Score=162.73  Aligned_cols=154  Identities=17%  Similarity=0.100  Sum_probs=125.2

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCC-CCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~i-p~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ..++.|+|++|.+++..|..+.++++|++|+|++|.+.+.+ |..+.. ++|++|+|++|++++..|..++.+++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            46888999999999888889999999999999999777677 666777 8999999999999988888999999999999


Q ss_pred             ccCCcCcccCchh--hhhcccCCceeecc---------------ccccceEECCCCccccccc--------ccccccccc
Q 007860          502 LNNNLLEGRVPEE--LYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLP--------QDLMSLSAK  556 (587)
Q Consensus       502 Ls~N~l~g~ip~~--l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p--------~~L~~L~l~  556 (587)
                      |++|.+.+.+|..  +..+. +|+.|+|+               +.+|++|+|++|.+++..|        ..|+.|+++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             CcCCCCCcccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            9999998766655  55555 68888887               5678899999999876544        457777888


Q ss_pred             ccccCC--------CC------CCcEEEccCCCCCC
Q 007860          557 RNRYQR--------QK------SLMLLEMESQHAKG  578 (587)
Q Consensus       557 ~N~i~~--------l~------~L~~L~Ls~N~l~~  578 (587)
                      .|.+..        +.      .|+.|+|++|++++
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV  218 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence            887732        22      28999999998765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.50  E-value=6.2e-14  Score=156.25  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=113.2

Q ss_pred             ceeecCCCC-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc
Q 007860          412 GITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG  485 (587)
Q Consensus       412 gv~c~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g  485 (587)
                      .+.|.....     ..+..++.|+|++|.|++..+..|.++++|++|+|++|+|++..|..+.. ++|++|+|++|+|++
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence            456754432     12346899999999999888889999999999999999999666667888 999999999999996


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCch-hhhhcccCCceeeccccccceEECCCCcccc-ccc------cccccccccc
Q 007860          486 SIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFDLSVVYICCIRRGRNDYDF-GLP------QDLMSLSAKR  557 (587)
Q Consensus       486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~-~~p------~~L~~L~l~~  557 (587)
                      ..|..|..+++|++|+|++|++++ +|. .++.+. +|+          +|+|++|+++. .+|      +.|+.|++++
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~-~L~----------~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK-TLK----------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCT-TCC----------EEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCc-ccC----------eeccccCccccCCCchhhccchhhhhhcccC
Confidence            555678999999999999999995 554 455544 344          45555555532 122      2345555555


Q ss_pred             cccCCC------------CCCcEEEccCCCCCCCCCCC
Q 007860          558 NRYQRQ------------KSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       558 N~i~~l------------~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      |+|...            ..+..++++.|.++.++...
T Consensus       183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~  220 (635)
T 4g8a_A          183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA  220 (635)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             ccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence            555211            12345667777776665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.49  E-value=3.6e-14  Score=131.06  Aligned_cols=139  Identities=19%  Similarity=0.196  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       424 ~~l~~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +.++.|+|++|.++ +.+|..+..+++|+.|+|++|.+++.  ..+.. ++|++|+|++|++++.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45889999999998 88999899999999999999999955  67777 9999999999999987898888899999999


Q ss_pred             ccCCcCcccCc--hhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCC
Q 007860          502 LNNNLLEGRVP--EELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       502 Ls~N~l~g~ip--~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~  579 (587)
                      |++|++++ +|  ..+..           +.+|++|+|++|++++ +|..      ....+..+++|+.|++++|.+..+
T Consensus       102 Ls~N~l~~-~~~~~~l~~-----------l~~L~~L~l~~N~l~~-~~~~------~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          102 LSGNKLKD-ISTLEPLKK-----------LECLKSLDLFNCEVTN-LNDY------RESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CBSSSCCS-SGGGGGGSS-----------CSCCCEEECCSSGGGT-STTH------HHHHHTTCSSCCEETTEETTSCBC
T ss_pred             ccCCccCc-chhHHHHhc-----------CCCCCEEEeeCCcCcc-hHHH------HHHHHHhCccCcEecCCCCChhhc
Confidence            99999984 54  34433           3467888999999983 4430      012356788999999999999999


Q ss_pred             CCCC
Q 007860          580 PTLP  583 (587)
Q Consensus       580 P~~~  583 (587)
                      |...
T Consensus       163 ~~~~  166 (168)
T 2ell_A          163 PDSD  166 (168)
T ss_dssp             CSSS
T ss_pred             cccc
Confidence            8754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.48  E-value=1e-13  Score=140.27  Aligned_cols=140  Identities=24%  Similarity=0.268  Sum_probs=84.6

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      +.|+.|+|++|.+++..+  +..+++|+.|+|++|.+++ +| .+.. ++|++|++++|++++ + +.+..+++|+.|++
T Consensus        68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l  141 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence            345566666666654333  5566666666666666653 33 2444 666666666666653 2 24555666666666


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc----ccccccccccccc------CCCCCCcEEEcc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------QRQKSLMLLEME  572 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------~~l~~L~~L~Ls  572 (587)
                      ++|++++ + ..+..           +.+|++|+|++|++++..|    +.|+.|++++|+|      ..+++|+.|+|+
T Consensus       142 ~~n~l~~-~-~~l~~-----------l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          142 GNNKITD-I-TVLSR-----------LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (291)
T ss_dssp             CSSCCCC-C-GGGGG-----------CTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             cCCcCCc-c-hhhcc-----------CCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence            6666653 2 22332           3456777777777764322    4577777888876      567788889999


Q ss_pred             CCCCCCCCCC
Q 007860          573 SQHAKGLPTL  582 (587)
Q Consensus       573 ~N~l~~~P~~  582 (587)
                      +|+++..|..
T Consensus       209 ~n~i~~~~~~  218 (291)
T 1h6t_A          209 SQECLNKPIN  218 (291)
T ss_dssp             EEEEECCCEE
T ss_pred             CCcccCCccc
Confidence            8888776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.47  E-value=2.3e-13  Score=137.49  Aligned_cols=130  Identities=22%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..|..+.. ++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            4555555555555 44555555555555555555555333344444 555555555555554333344555555555555


Q ss_pred             CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCC
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAK  577 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~  577 (587)
                      +|+++ .+|..++..          +.+|+.|+|++|+++ .+|..+          ..+..|+.|+|++|.+.
T Consensus       157 ~N~l~-~l~~~~~~~----------l~~L~~L~L~~N~l~-~ip~~~----------~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          157 NNNLT-ELPAGLLNG----------LENLDTLLLQENSLY-TIPKGF----------FGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TSCCS-CCCTTTTTT----------CTTCCEEECCSSCCC-CCCTTT----------TTTCCCSEEECCSCCBC
T ss_pred             CCcCC-ccCHHHhcC----------cCCCCEEECCCCcCC-ccChhh----------cccccCCeEEeCCCCcc
Confidence            55555 344332221          223445555556555 444321          22335667777776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.47  E-value=7e-14  Score=144.51  Aligned_cols=138  Identities=16%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +.. ++|++|++++|++++ +|. +..+++|+.|+++
T Consensus       178 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~  251 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIG  251 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred             CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECC
Confidence            35555555555543222  5555555555555555553222  333 556666666665552 333 5555566666666


Q ss_pred             CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc--------CCCCCCcEEEc
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY--------QRQKSLMLLEM  571 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i--------~~l~~L~~L~L  571 (587)
                      +|.+.+ ++ .+..           +.+|+.|++++|+++..    -.++|+.|++++|++        ..+++|+.|+|
T Consensus       252 ~n~l~~-~~-~~~~-----------l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          252 TNQISD-IN-AVKD-----------LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             SSCCCC-CG-GGTT-----------CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred             CCccCC-Ch-hHhc-----------CCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence            665552 22 2332           33455555555555421    113455555665554        34556666666


Q ss_pred             cCCCCCCCCC
Q 007860          572 ESQHAKGLPT  581 (587)
Q Consensus       572 s~N~l~~~P~  581 (587)
                      ++|+++++|.
T Consensus       319 ~~n~l~~~~~  328 (347)
T 4fmz_A          319 SQNHITDIRP  328 (347)
T ss_dssp             CSSSCCCCGG
T ss_pred             cCCccccccC
Confidence            6666665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=3.1e-13  Score=127.89  Aligned_cols=128  Identities=26%  Similarity=0.393  Sum_probs=102.0

Q ss_pred             EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      +.+++++|+++ .+|..+..  +|+.|+|++|.+++..+.. +.. ++|++|+|++|++++..|..+..+++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56999999996 67776644  8999999999999665543 666 9999999999999988899999999999999999


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCC
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~  578 (587)
                      |+|++..|..+..+           .+|+.|+|++|++++..|..          |..+++|+.|+|++|.+++
T Consensus        88 N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGL-----------HQLKTLNLYDNQISCVMPGS----------FEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTC-----------TTCCEEECCSSCCCEECTTS----------STTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCC-----------CCCCEEECCCCcCCeeCHHH----------hhcCCCCCEEEeCCCCccC
Confidence            99997555445443           35778888899998765653          3445567777777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=4.7e-14  Score=147.15  Aligned_cols=50  Identities=12%  Similarity=0.051  Sum_probs=29.1

Q ss_pred             ccceEECCCCccccccc-----------cccccccccccccCC-------------CCCCcEEEccCCCCCCCC
Q 007860          531 YICCIRRGRNDYDFGLP-----------QDLMSLSAKRNRYQR-------------QKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       531 ~L~~L~L~~N~l~~~~p-----------~~L~~L~l~~N~i~~-------------l~~L~~L~Ls~N~l~~~P  580 (587)
                      +|++|+|++|++++..+           ..|+.|+|++|+|..             .++|+.|+|++|+|+..+
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            56666666666653222           356666666666533             346666666666666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.45  E-value=8.7e-14  Score=143.81  Aligned_cols=136  Identities=15%  Similarity=0.225  Sum_probs=106.9

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +..++.|++++|.+.+..+  +..+++|+.|++++|.+++ ++. +.. ++|++|++++|++++ + +.+..+++|+.|+
T Consensus       198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~  271 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN  271 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred             CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence            3468899999999986554  8999999999999999994 444 667 999999999999985 4 4688999999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc------CCCCCCcEE
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY------QRQKSLMLL  569 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i------~~l~~L~~L  569 (587)
                      +++|++.+ ++ .+..           +.+|+.|+|++|++.+..|      +.|+.|++++|++      ..+++|+.|
T Consensus       272 l~~n~l~~-~~-~~~~-----------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  338 (347)
T 4fmz_A          272 VGSNQISD-IS-VLNN-----------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA  338 (347)
T ss_dssp             CCSSCCCC-CG-GGGG-----------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEE
T ss_pred             ccCCccCC-Ch-hhcC-----------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcccee
Confidence            99999984 43 3333           3456777777888765433      4577888888877      567889999


Q ss_pred             EccCCCCC
Q 007860          570 EMESQHAK  577 (587)
Q Consensus       570 ~Ls~N~l~  577 (587)
                      ++++|+|+
T Consensus       339 ~l~~N~i~  346 (347)
T 4fmz_A          339 DFANQVIK  346 (347)
T ss_dssp             SSSCC---
T ss_pred             ehhhhccc
Confidence            99999986

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.45  E-value=2e-13  Score=151.80  Aligned_cols=143  Identities=23%  Similarity=0.256  Sum_probs=110.8

Q ss_pred             CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      .++.|+.|+|++|.+.+..+  +..|++|+.|+|++|.|.+ +| .+.. ++|+.|+|++|++++ + +.+..+++|+.|
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L  136 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL  136 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence            34568889999999987555  8899999999999999984 44 5677 899999999999984 4 458888999999


Q ss_pred             EccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc----ccccccccccccc------CCCCCCcEEE
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------QRQKSLMLLE  570 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------~~l~~L~~L~  570 (587)
                      +|++|++++ + ..+..           +.+|+.|+|++|++++..|    +.|+.|+|++|+|      ..+++|+.|+
T Consensus       137 ~Ls~N~l~~-l-~~l~~-----------l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~  203 (605)
T 1m9s_A          137 YLGNNKITD-I-TVLSR-----------LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE  203 (605)
T ss_dssp             ECCSSCCCC-C-GGGGS-----------CTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEE
T ss_pred             ECCCCccCC-c-hhhcc-----------cCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEE
Confidence            999999985 3 33443           3456677777777765333    5677888888876      5678899999


Q ss_pred             ccCCCCCCCCCCC
Q 007860          571 MESQHAKGLPTLP  583 (587)
Q Consensus       571 Ls~N~l~~~P~~~  583 (587)
                      |++|++.+.|...
T Consensus       204 L~~N~l~~~p~~~  216 (605)
T 1m9s_A          204 LFSQECLNKPINH  216 (605)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             ccCCcCcCCcccc
Confidence            9999999887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.44  E-value=1.2e-12  Score=127.56  Aligned_cols=132  Identities=21%  Similarity=0.265  Sum_probs=107.8

Q ss_pred             EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  505 (587)
                      +.++.+++.+. .+|..+.  ++|+.|+|++|.+++..|..+.. ++|++|+|++|+++...+..+..+++|+.|+|++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            45899999987 6676554  89999999999999888888888 99999999999998544466789999999999999


Q ss_pred             cCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860          506 LLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       506 ~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      +|++ +|...+..          +.+|+.|+|++|+++ .+|..+          ..+.+|+.|+|++|+|+++|...
T Consensus        99 ~l~~-l~~~~~~~----------l~~L~~L~Ls~N~l~-~lp~~~----------~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           99 QLTV-LPSAVFDR----------LVHLKELFMCCNKLT-ELPRGI----------ERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             CCCC-CCTTTTTT----------CTTCCEEECCSSCCC-SCCTTG----------GGCTTCSEEECCSSCCCCCCTTT
T ss_pred             cCCc-cChhHhCc----------chhhCeEeccCCccc-ccCccc----------ccCCCCCEEECCCCcCCccCHHH
Confidence            9994 55543321          335778888899998 777653          45679999999999999999753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.43  E-value=1.2e-12  Score=126.77  Aligned_cols=134  Identities=19%  Similarity=0.330  Sum_probs=110.5

Q ss_pred             EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  505 (587)
                      +.+++++++++ .+|..+.  ++|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            35899999998 5676554  78999999999999666667888 99999999999999888999999999999999999


Q ss_pred             cCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCCCC
Q 007860          506 LLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       506 ~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      +|+ .+|...+..          +.+|+.|+|++|++++..|.          .|..+.+|+.|+|++|+|+++|...+
T Consensus        91 ~l~-~l~~~~f~~----------l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           91 KIT-ELPKSLFEG----------LFSLQLLLLNANKINCLRVD----------AFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             CCC-CCCTTTTTT----------CTTCCEEECCSSCCCCCCTT----------TTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cCC-ccCHhHccC----------CCCCCEEECCCCCCCEeCHH----------HcCCCCCCCEEECCCCcCCEECHHHH
Confidence            999 577665432          33577888889999854443          35667899999999999999987543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.42  E-value=1.1e-12  Score=141.23  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=118.4

Q ss_pred             CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      .++.|+.|+|++|.+++. |  ++.+++|++|++++|.+++ +|  ++. ++|++|++++|++++ +|  ++.+++|+.|
T Consensus        62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L  132 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL  132 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred             ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence            345688899999998874 3  8889999999999999985 44  667 899999999999985 55  8889999999


Q ss_pred             EccCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc----
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY----  560 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i----  560 (587)
                      ++++|++++ ++  ++.+. +|+.|+++            +.+|+.|+|++|++++ +|    +.|+.|++++|+|    
T Consensus       133 ~l~~N~l~~-l~--l~~l~-~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~~  207 (457)
T 3bz5_A          133 NCARNTLTE-ID--VSHNT-QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKLD  207 (457)
T ss_dssp             ECTTSCCSC-CC--CTTCT-TCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCCC
T ss_pred             ECCCCccce-ec--cccCC-cCCEEECCCCCcccccccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCeec
Confidence            999999986 54  55554 58888877            4578999999999885 44    5688888999987    


Q ss_pred             -CCCCCCcEEEccCCCCCCCC
Q 007860          561 -QRQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       561 -~~l~~L~~L~Ls~N~l~~~P  580 (587)
                       ..+++|+.|+|++|+|+++|
T Consensus       208 l~~l~~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNKLTEID  228 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC
T ss_pred             cccCCCCCEEECcCCcccccC
Confidence             56789999999999999988

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=2.1e-13  Score=130.47  Aligned_cols=125  Identities=24%  Similarity=0.271  Sum_probs=97.8

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..|+.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+.. ++|++|+|++|++++..+..+..+++|+.|+|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL  131 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence            45889999999999777777899999999999999999555555677 99999999999999766666899999999999


Q ss_pred             cCCcCcccCchh-hhhcccCCceeeccccccceEECCCCccccccccccccccccccccC
Q 007860          503 NNNLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQ  561 (587)
Q Consensus       503 s~N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~  561 (587)
                      ++|++++ +|.. +..+           .+|+.|+|++|++.+.. +.|+.|+++.|++.
T Consensus       132 ~~N~l~~-~~~~~~~~l-----------~~L~~L~l~~N~~~~~~-~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          132 YQNQLKS-VPDGVFDRL-----------TSLQYIWLHDNPWDCTC-PGIRYLSEWINKHS  178 (208)
T ss_dssp             CSSCCSC-CCTTTTTTC-----------TTCCEEECCSCCBCCCT-TTTHHHHHHHHHCT
T ss_pred             CCCccce-eCHHHhccC-----------CCccEEEecCCCeecCC-CCHHHHHHHHHhCC
Confidence            9999995 5554 3433           34566666677776443 35667777776663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.41  E-value=3.8e-13  Score=131.61  Aligned_cols=137  Identities=16%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             eEEEEEcCC-CCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCcc---EEeccCC-cCCccCCccccCCCCCC
Q 007860          425 VISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV---RLDLSDN-QFTGSIPDSLTSSSKLQ  498 (587)
Q Consensus       425 ~l~~L~L~~-n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~---~L~Ls~N-~l~g~iP~~l~~l~~L~  498 (587)
                      .|+.|+|++ |.+++..+..+..+++|+.|++++|.+++ +|. +.. ++|+   +|++++| ++++..+..+..+++|+
T Consensus        81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C           81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence            345555555 55554444445555555555555555552 444 333 4444   5555555 55533333455555555


Q ss_pred             -EEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCc-cccccc-------cccccccccccccC-----CCC
Q 007860          499 -LVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRND-YDFGLP-------QDLMSLSAKRNRYQ-----RQK  564 (587)
Q Consensus       499 -~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~-l~~~~p-------~~L~~L~l~~N~i~-----~l~  564 (587)
                       .|++++|+++ .+|...+..           .+|+.|+|++|+ ++...+       +.|+.|++++|+|.     .+.
T Consensus       159 ~~L~l~~n~l~-~i~~~~~~~-----------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~  226 (239)
T 2xwt_C          159 LTLKLYNNGFT-SVQGYAFNG-----------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE  226 (239)
T ss_dssp             EEEECCSCCCC-EECTTTTTT-----------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT
T ss_pred             eEEEcCCCCCc-ccCHhhcCC-----------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc
Confidence             5555555554 444433322           246777788884 653211       46888899999983     567


Q ss_pred             CCcEEEccCCC
Q 007860          565 SLMLLEMESQH  575 (587)
Q Consensus       565 ~L~~L~Ls~N~  575 (587)
                      +|+.|+++++.
T Consensus       227 ~L~~L~l~~~~  237 (239)
T 2xwt_C          227 HLKELIARNTW  237 (239)
T ss_dssp             TCSEEECTTC-
T ss_pred             cCceeeccCcc
Confidence            89999998763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=144.22  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc-cCCccccCCCCCCE
Q 007860          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQL  499 (587)
Q Consensus       422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~  499 (587)
                      .+..|+.|+|++|.+++..|..|.++++|++|++++|.+++..+..++. ++|++|++++|++++ .+|..++++++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            3456777777777777666677777777777777777777433335666 777777777777765 46777777777777


Q ss_pred             EEccCCcCcccCchhhhhcc
Q 007860          500 VLLNNNLLEGRVPEELYSIG  519 (587)
Q Consensus       500 L~Ls~N~l~g~ip~~l~~~~  519 (587)
                      |++++|++.+..|..+..+.
T Consensus       154 L~l~~n~l~~~~~~~~~~l~  173 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLH  173 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHH
T ss_pred             EeCcCCccceecHHHccchh
Confidence            77777777754455554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.41  E-value=7.9e-13  Score=145.61  Aligned_cols=137  Identities=22%  Similarity=0.308  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      .|+.|+|++|.|+ .+|   ..+++|+.|+|++|+|++ +|. +. .+|++|+|++|+|++ +|.   .+++|+.|+|++
T Consensus        81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDNNQLTM-LPE---LPALLEYINADN  149 (571)
T ss_dssp             TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence            4778888888887 566   457888888888888885 776 44 388888888888885 676   567888888888


Q ss_pred             CcCcccCchhhhhcccCCceeeccc----------cccceEECCCCcccccccc---cc-------cccccccccc----
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSV----------VYICCIRRGRNDYDFGLPQ---DL-------MSLSAKRNRY----  560 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl----------~~L~~L~L~~N~l~~~~p~---~L-------~~L~l~~N~i----  560 (587)
                      |+|++ +|.    ...+|+.|+|+.          .+|+.|+|++|+|+ .+|.   +|       +.|+|++|+|    
T Consensus       150 N~l~~-lp~----~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp  223 (571)
T 3cvr_A          150 NQLTM-LPE----LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIP  223 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCCC--------CCEEEECCSSCCCCCC
T ss_pred             CccCc-CCC----cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chhhHHHhhhcccccceEEecCCCcceecC
Confidence            88874 665    234677787773          35888999999988 5554   67       8899999987    


Q ss_pred             ---CCCCCCcEEEccCCCCCC
Q 007860          561 ---QRQKSLMLLEMESQHAKG  578 (587)
Q Consensus       561 ---~~l~~L~~L~Ls~N~l~~  578 (587)
                         ..+++|+.|+|++|+|++
T Consensus       224 ~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          224 ENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             GGGGGSCTTEEEECCSSSCCH
T ss_pred             HHHhcCCCCCEEEeeCCcCCC
Confidence               347789999999999976

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=2.5e-13  Score=135.21  Aligned_cols=139  Identities=19%  Similarity=0.277  Sum_probs=109.0

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +..|+.|++++|+++. ++ .+..+++|+.|+|++|++++ +|+ +.. ++|++|+|++|++++ +|.. .. ++|+.|+
T Consensus        40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF  112 (263)
T ss_dssp             HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred             cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence            3468899999999984 55 78999999999999999995 454 777 999999999999994 6653 33 8999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc------CCCCCCcEEEc
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY------QRQKSLMLLEM  571 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i------~~l~~L~~L~L  571 (587)
                      |++|++++ ++ .+..+           .+|+.|+|++|++++.    -.+.|+.|++++|+|      ..+++|+.|+|
T Consensus       113 L~~N~l~~-~~-~l~~l-----------~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l  179 (263)
T 1xeu_A          113 LDNNELRD-TD-SLIHL-----------KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL  179 (263)
T ss_dssp             CCSSCCSB-SG-GGTTC-----------TTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEE
T ss_pred             ccCCccCC-Ch-hhcCc-----------ccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeC
Confidence            99999985 54 34443           3466667777777632    125677888888877      56778999999


Q ss_pred             cCCCCCCCCC
Q 007860          572 ESQHAKGLPT  581 (587)
Q Consensus       572 s~N~l~~~P~  581 (587)
                      ++|+++..|.
T Consensus       180 ~~N~~~~~~~  189 (263)
T 1xeu_A          180 TGQKCVNEPV  189 (263)
T ss_dssp             EEEEEECCCE
T ss_pred             CCCcccCCcc
Confidence            9999988774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.40  E-value=2.2e-12  Score=124.79  Aligned_cols=133  Identities=17%  Similarity=0.216  Sum_probs=106.6

Q ss_pred             EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      +.+++++|.++ .+|..+.  ..++.|+|++|.+++..|.. +.. ++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46999999998 4676553  45789999999999765654 566 9999999999999977777899999999999999


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      |++++..+..+..+           .+|+.|+|++|++++..|..          |.++.+|+.|+|++|+|++++...
T Consensus        91 N~l~~~~~~~~~~l-----------~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           91 NRLENVQHKMFKGL-----------ESLKTLMLRSNRITCVGNDS----------FIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             SCCCCCCGGGGTTC-----------SSCCEEECTTSCCCCBCTTS----------STTCTTCSEEECTTSCCCCBCTTT
T ss_pred             CccCccCHhHhcCC-----------cCCCEEECCCCcCCeECHhH----------cCCCccCCEEECCCCcCCEECHHH
Confidence            99996444445443           35778888899998654543          456779999999999999996543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=1.1e-13  Score=157.44  Aligned_cols=130  Identities=24%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..|+.|+|++|.+. .+|..+..|++|+.|+|++|.|+ .+|..++. ++|++|+|++|+|+ .+|..++.|++|+.|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            34566666666665 55555666666666666666666 66666655 66666666666666 56666666666666666


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccc---------------eEECCCCcccccccccccccccccc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYIC---------------CIRRGRNDYDFGLPQDLMSLSAKRN  558 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~---------------~L~L~~N~l~~~~p~~L~~L~l~~N  558 (587)
                      ++|.|+ .+|..++.+. +|+.|+|+.+.|.               .|+|++|.+++.+|..|+.|++++|
T Consensus       301 ~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD  369 (727)
T ss_dssp             CSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred             CCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence            666665 5666555544 3444444422211               2456677777777777777777766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.40  E-value=1e-12  Score=144.94  Aligned_cols=148  Identities=16%  Similarity=0.138  Sum_probs=107.8

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..++.|+|++|.+++..+..|.++++|+.|+|++|++++..|..+.. ++|++|+|++|++++..|..++.+++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            45888999999999888888999999999999999999766777888 99999999999999777788999999999999


Q ss_pred             cCCcCcccCch-hhhhcccCCceeeccccccceEECCCCcccc-ccc------cccccccccccccC--------CCCCC
Q 007860          503 NNNLLEGRVPE-ELYSIGVHGGAFDLSVVYICCIRRGRNDYDF-GLP------QDLMSLSAKRNRYQ--------RQKSL  566 (587)
Q Consensus       503 s~N~l~g~ip~-~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~-~~p------~~L~~L~l~~N~i~--------~l~~L  566 (587)
                      ++|++.+ ++. .++.+.           +|++|+|++|.+++ .+|      ++|+.|++++|++.        .+.+|
T Consensus       108 ~~n~l~~-l~~~~~~~l~-----------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          108 VETNLAS-LENFPIGHLK-----------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTSCCCC-STTCSCTTCT-----------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             ccccccc-CCCccccccc-----------cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            9999984 443 344433           35555555665543 233      34555566666552        22334


Q ss_pred             ----cEEEccCCCCCCCCCCC
Q 007860          567 ----MLLEMESQHAKGLPTLP  583 (587)
Q Consensus       567 ----~~L~Ls~N~l~~~P~~~  583 (587)
                          +.|++++|++++++...
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~  196 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGA  196 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTT
T ss_pred             chhhhhcccCCCCceecCHHH
Confidence                56777777776665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=3.9e-13  Score=121.41  Aligned_cols=129  Identities=17%  Similarity=0.195  Sum_probs=103.0

Q ss_pred             eeEEEEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       424 ~~l~~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ..++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+.. ++|++|++++|++++.+|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45888999999998 88999999999999999999999965  67777 9999999999999987898888899999999


Q ss_pred             ccCCcCcccCc--hhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccC
Q 007860          502 LNNNLLEGRVP--EELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMES  573 (587)
Q Consensus       502 Ls~N~l~g~ip--~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~  573 (587)
                      +++|++++ +|  ..+..           +.+|++|++++|++++ +|.-      ....+..+++|+.|++++
T Consensus        95 ls~N~i~~-~~~~~~~~~-----------l~~L~~L~l~~N~l~~-~~~~------~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKD-LSTIEPLKK-----------LENLKSLDLFNCEVTN-LNDY------RENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCS-HHHHGGGGG-----------CTTCCEEECTTCGGGG-STTH------HHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCC-hHHHHHHhh-----------CCCCCEEeCcCCcccc-hHHH------HHHHHHHCCCcccccCCC
Confidence            99999985 33  44444           3457888899999984 3320      001234566888888763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=2.1e-13  Score=139.53  Aligned_cols=149  Identities=21%  Similarity=0.164  Sum_probs=121.4

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ++.|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|  +.. ++|++|++++|++++ +|    .+++|+.|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence            3468999999999999888999999999999999999996554  777 999999999999984 33    337888999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc-------ccccccccccccc
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP-------QDLMSLSAKRNRY  560 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p-------~~L~~L~l~~N~i  560 (587)
                      +++|++++..+..    ..+|+.|+++              +.+|+.|+|++|++++..|       +.|+.|++++|+|
T Consensus       106 l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          106 AANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            9999888543332    2357777776              4678999999999875322       5688889999988


Q ss_pred             ------CCCCCCcEEEccCCCCCCCCCC
Q 007860          561 ------QRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       561 ------~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                            ..+++|+.|+|++|+|+++|..
T Consensus       182 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  209 (317)
T 3o53_A          182 YDVKGQVVFAKLKTLDLSSNKLAFMGPE  209 (317)
T ss_dssp             CEEECCCCCTTCCEEECCSSCCCEECGG
T ss_pred             cccccccccccCCEEECCCCcCCcchhh
Confidence                  3488999999999999998764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=1.7e-12  Score=140.02  Aligned_cols=152  Identities=22%  Similarity=0.250  Sum_probs=109.9

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ++.|+.|++++|.+.+.  +.+..+++|+.|++++|.+++..|  +.. ++|+.|++++|++++ +|. +..+++|+.|+
T Consensus       220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~  293 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLE  293 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred             cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEE
Confidence            34577888888888753  457788888888888888885444  566 888888888888885 343 77888888888


Q ss_pred             ccCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccc----ccccccccccccccc-----
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY-----  560 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i-----  560 (587)
                      +++|++.+ ++. +..+. +|+.|+++            +.+|+.|++++|++++.    -.+.|+.|++++|++     
T Consensus       294 L~~n~l~~-~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          294 LNENQLED-ISP-ISNLK-NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCSSCCSC-CGG-GGGCT-TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cCCCcccC-chh-hcCCC-CCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence            88888875 443 55544 57777776            45677888888877642    114577777888876     


Q ss_pred             -CCCCCCcEEEccCCCCCCCCCCC
Q 007860          561 -QRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       561 -~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                       ..+++|+.|++++|+++++|...
T Consensus       371 ~~~l~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          371 LANLTRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             GTTCTTCCEEECCCEEEECCCBCC
T ss_pred             hhcCCCCCEEeccCCcccCCchhh
Confidence             45677888888888888877543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=2.9e-12  Score=121.33  Aligned_cols=126  Identities=20%  Similarity=0.317  Sum_probs=99.3

Q ss_pred             EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  505 (587)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|.++ .+|..+.. ++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46899999998 5676553  68999999999999 88988888 99999999999999777788999999999999999


Q ss_pred             cCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCC
Q 007860          506 LLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAK  577 (587)
Q Consensus       506 ~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~  577 (587)
                      +|++..|..+..+           .+|+.|+|++|+++ .+|..         .|..+.+|+.|+|++|.+.
T Consensus        89 ~l~~i~~~~f~~l-----------~~L~~L~L~~N~l~-~~~~~---------~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGL-----------KSLRLLSLHGNDIS-VVPEG---------AFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTC-----------TTCCEEECCSSCCC-BCCTT---------TTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCC-----------CCCCEEECCCCCCC-eeChh---------hhhcCccccEEEeCCCCee
Confidence            9996544445543           35778888899988 44432         1344556667777766654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=3.6e-13  Score=146.22  Aligned_cols=190  Identities=17%  Similarity=0.106  Sum_probs=124.0

Q ss_pred             eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (587)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~  414 (587)
                      .+..+++++|.+++..+  .+.  +..++.+.+..+.+..+|..    ..++..       +..        .|.+.++.
T Consensus        59 ~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~~----~~L~~L-------~L~--------~N~l~~~~  115 (487)
T 3oja_A           59 KLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELLVG----PSIETL-------HAA--------NNNISRVS  115 (487)
T ss_dssp             TCCEEECTTSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEEC----TTCCEE-------ECC--------SSCCCCEE
T ss_pred             CCCEEEeeCCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCCC----CCcCEE-------ECc--------CCcCCCCC
Confidence            56667777777765443  333  55666666666655444421    111110       000        02445555


Q ss_pred             ecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCC-C-CCccEEeccCCcCCccCCcccc
Q 007860          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLT  492 (587)
Q Consensus       415 c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~  492 (587)
                      |..     ++.|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. . ++|+.|+|++|.+++. |. +.
T Consensus       116 ~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~  188 (487)
T 3oja_A          116 CSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV  188 (487)
T ss_dssp             ECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred             ccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cc
Confidence            532     24578888888888888888888888888888888888887777776 4 8888888888888855 33 44


Q ss_pred             CCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEcc
Q 007860          493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEME  572 (587)
Q Consensus       493 ~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls  572 (587)
                      .+++|+.|+|++|.+++ +|+.+..+.           +|+.|+|++|.++ .+|..          +..+++|+.|+|+
T Consensus       189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~-----------~L~~L~Ls~N~l~-~lp~~----------l~~l~~L~~L~l~  245 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAF-MGPEFQSAA-----------GVTWISLRNNKLV-LIEKA----------LRFSQNLEHFDLR  245 (487)
T ss_dssp             CCTTCCEEECCSSCCCE-ECGGGGGGT-----------TCSEEECTTSCCC-EECTT----------CCCCTTCCEEECT
T ss_pred             cCCCCCEEECCCCCCCC-CCHhHcCCC-----------CccEEEecCCcCc-ccchh----------hccCCCCCEEEcC
Confidence            68888888888888885 555555433           4666777777777 35543          2344567777777


Q ss_pred             CCCCC
Q 007860          573 SQHAK  577 (587)
Q Consensus       573 ~N~l~  577 (587)
                      +|.+.
T Consensus       246 ~N~l~  250 (487)
T 3oja_A          246 GNGFH  250 (487)
T ss_dssp             TCCBC
T ss_pred             CCCCc
Confidence            77665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.36  E-value=3.6e-12  Score=141.97  Aligned_cols=87  Identities=24%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|+|++|.|+ .+|.   .+++|+.|+|++|+++ .+|.   . ++|++|+|++|+++ .+|.   .+++|+.|+++
T Consensus        62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIF  129 (622)
T ss_dssp             TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECC
T ss_pred             CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECC
Confidence            4666777777776 3444   4567777777777776 4555   3 66777777777766 3444   34555556666


Q ss_pred             CCcCcccCchhhhhcccCCceeecc
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLS  528 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Ls  528 (587)
                      +|+++ .+|..+    .+|+.|+|+
T Consensus       130 ~N~l~-~lp~~l----~~L~~L~Ls  149 (622)
T 3g06_A          130 GNQLT-SLPVLP----PGLQELSVS  149 (622)
T ss_dssp             SSCCS-CCCCCC----TTCCEEECC
T ss_pred             CCCCC-cCCCCC----CCCCEEECc
Confidence            55555 244322    234555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.35  E-value=2.7e-12  Score=138.42  Aligned_cols=129  Identities=19%  Similarity=0.292  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|++++|.+.+..+  +..+++|+.|++++|.+++. +. +.. ++|+.|++++|++++. +. ++.+++|+.|+++
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~  317 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLY  317 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECC
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECc
Confidence            45566666666654433  55666666666666666632 22 444 6666666666666643 22 5556666666666


Q ss_pred             CCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----cccccccccccccCC
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRYQR  562 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i~~  562 (587)
                      +|++++..|  +..+. +|+.|+++            +.+|+.|++++|++++..|    +.|+.|++++|++.+
T Consensus       318 ~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          318 FNNISDISP--VSSLT-KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SSCCSCCGG--GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             CCcCCCchh--hccCc-cCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence            666654333  33333 45555555            3455666666666654433    345555566665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=1e-11  Score=115.46  Aligned_cols=130  Identities=21%  Similarity=0.272  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      .+.++++++++. .+|..+  .++|+.|++++|.+++..+..+.. ++|++|+|++|++++..+..++.+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            356899999998 456544  379999999999999655556677 9999999999999966666689999999999999


Q ss_pred             CcCcccCchh-hhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCC
Q 007860          505 NLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       505 N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P  580 (587)
                      |++++ +|.. +..           +.+|+.|+|++|+++ .+|..         .+..+++|+.|+|++|++.+.+
T Consensus        86 N~l~~-~~~~~~~~-----------l~~L~~L~l~~N~l~-~~~~~---------~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQS-LPNGVFDK-----------LTQLKELALDTNQLK-SVPDG---------IFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCC-CCTTTTTT-----------CTTCCEEECCSSCCS-CCCTT---------TTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccc-cCHHHhhC-----------CcccCEEECcCCcce-EeCHH---------HhcCCcccCEEEecCCCeeccC
Confidence            99995 5543 343           335778888899988 45543         1455778899999999887654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=5.3e-13  Score=151.80  Aligned_cols=145  Identities=19%  Similarity=0.188  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCCcc---------cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCC
Q 007860          426 ISQIDLGSQGLKG---------YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS  495 (587)
Q Consensus       426 l~~L~L~~n~l~g---------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~  495 (587)
                      ++.++|+.|.|.+         .++..+..++.|+.|+|++|.+. .+|..+.. ++|++|+|++|+|+ .+|..++.|+
T Consensus       193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  270 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS  270 (727)
T ss_dssp             -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred             hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence            4445555555443         45778999999999999999999 89988888 99999999999999 9999999999


Q ss_pred             CCCEEEccCCcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccccccccccc-------ccc
Q 007860          496 KLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLPQDLMS-------LSA  555 (587)
Q Consensus       496 ~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p~~L~~-------L~l  555 (587)
                      +|+.|+|++|+|+ .+|..++.+. +|+.|+|+             +.+|+.|+|++|+|++.+|..+..       |+|
T Consensus       271 ~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l  348 (727)
T 4b8c_D          271 NLRVLDLSHNRLT-SLPAELGSCF-QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL  348 (727)
T ss_dssp             TCCEEECTTSCCS-SCCSSGGGGT-TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEeCcCCcCC-ccChhhcCCC-CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence            9999999999999 8999998877 59999888             677889999999998877755433       457


Q ss_pred             cccccCC--CCCCcEEEccCC
Q 007860          556 KRNRYQR--QKSLMLLEMESQ  574 (587)
Q Consensus       556 ~~N~i~~--l~~L~~L~Ls~N  574 (587)
                      ++|.+.+  ...|+.|++++|
T Consensus       349 ~~N~l~~~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          349 RDNRPEIPLPHERRFIEINTD  369 (727)
T ss_dssp             HHCCCCCCCCCC---------
T ss_pred             ccCcccCcCccccceeEeecc
Confidence            7888743  456778888877

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.33  E-value=6.9e-12  Score=139.65  Aligned_cols=78  Identities=26%  Similarity=0.404  Sum_probs=61.7

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ++.|+.|+|++|.|++ +|.   .+++|++|+|++|.++ .+|.   . ++|+.|++++|+++ .+|..   +++|++|+
T Consensus        80 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~  147 (622)
T 3g06_A           80 PPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELS  147 (622)
T ss_dssp             CTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEE
Confidence            4568999999999984 555   7899999999999998 5665   4 78888999999888 46764   37788888


Q ss_pred             ccCCcCcccCch
Q 007860          502 LNNNLLEGRVPE  513 (587)
Q Consensus       502 Ls~N~l~g~ip~  513 (587)
                      |++|++++ +|.
T Consensus       148 Ls~N~l~~-l~~  158 (622)
T 3g06_A          148 VSDNQLAS-LPA  158 (622)
T ss_dssp             CCSSCCSC-CCC
T ss_pred             CcCCcCCC-cCC
Confidence            88888873 443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.33  E-value=3.9e-12  Score=141.62  Aligned_cols=139  Identities=17%  Similarity=0.124  Sum_probs=110.4

Q ss_pred             EEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcC
Q 007860          429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL  507 (587)
Q Consensus       429 L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  507 (587)
                      .+-++.+++ .+|..+.  +++++|||++|+|++..|..+.. ++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            466667777 5676542  47999999999999666677888 9999999999999976677899999999999999999


Q ss_pred             cccCchh-hhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc---------CCCCCCcEEEc
Q 007860          508 EGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY---------QRQKSLMLLEM  571 (587)
Q Consensus       508 ~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i---------~~l~~L~~L~L  571 (587)
                      ++ +|.. +..+           .+|++|+|++|++++..+      ++|+.|++++|+|         ..+..|+.|+|
T Consensus       113 ~~-l~~~~f~~L-----------~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          113 QS-LALGAFSGL-----------SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             CE-ECGGGGTTC-----------TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CC-CCHHHhcCC-----------CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence            84 6654 4443           346677777888774222      4688889999987         45789999999


Q ss_pred             cCCCCCCCCCC
Q 007860          572 ESQHAKGLPTL  582 (587)
Q Consensus       572 s~N~l~~~P~~  582 (587)
                      ++|+|++++..
T Consensus       181 ~~N~l~~~~~~  191 (635)
T 4g8a_A          181 SSNKIQSIYCT  191 (635)
T ss_dssp             CSSCCCEECGG
T ss_pred             cCccccccccc
Confidence            99999988653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=4.4e-12  Score=117.56  Aligned_cols=107  Identities=18%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             CCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccE
Q 007860          402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR  475 (587)
Q Consensus       402 c~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~  475 (587)
                      |...|.|.|..+.|.......     ...++.|+|++|.|++..|..|..+++|+.|+|++|+|++..+..+.. ++|++
T Consensus         3 CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A            3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             CC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            555555666666665433211     123455555555555555555555555555555555555332223334 55555


Q ss_pred             EeccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860          476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       476 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      |+|++|+|++..+..+..+++|+.|+|++|++.
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            555555555333334555555555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=9.1e-13  Score=137.37  Aligned_cols=148  Identities=21%  Similarity=0.218  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCCcccCc----hhhcCCC-CCCEEEccCCCCCCCCCCCCCC------CCccEEeccCCcCCccCCcccc-
Q 007860          425 VISQIDLGSQGLKGYIS----DKISLLS-NLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLT-  492 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p----~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~------~~L~~L~Ls~N~l~g~iP~~l~-  492 (587)
                      .|+.|+|++|.+++..+    ..+..++ +|+.|+|++|.+++..+..+..      ++|++|+|++|++++..+..++ 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            36677777777776555    5666676 7777777777777555544433      5677777777777755554333 


Q ss_pred             ---CC-CCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc-----------ccccccccccccc
Q 007860          493 ---SS-SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF-----------GLPQDLMSLSAKR  557 (587)
Q Consensus       493 ---~l-~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~-----------~~p~~L~~L~l~~  557 (587)
                         .+ ++|+.|+|++|++++..+..+......+      ..+|++|+|++|++..           ..|..|+.|+|++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC------CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence               33 6777777777777654444444432100      1368888999998873           2345899999999


Q ss_pred             cccC------------CC-CCCcEEEccCCCCCC
Q 007860          558 NRYQ------------RQ-KSLMLLEMESQHAKG  578 (587)
Q Consensus       558 N~i~------------~l-~~L~~L~Ls~N~l~~  578 (587)
                      |+|+            .. ++|+.|+|++|+|+.
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            9883            22 599999999999987

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=3e-12  Score=133.43  Aligned_cols=128  Identities=23%  Similarity=0.201  Sum_probs=101.4

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..|+.|+|++|.|++..+..|..+++|+.|+|++|+|++..+..+.. ++|++|+|++|++++..|..|..+++|+.|+|
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            45889999999999888888999999999999999999666666777 99999999999999877889999999999999


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccc---------cccccccccccc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQ---------DLMSLSAKRNRY  560 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~---------~L~~L~l~~N~i  560 (587)
                      ++|+|+ .+|..++.....       +.+|+.|+|++|+|+ .+|.         .++.|+|++|.+
T Consensus       144 ~~N~l~-~l~~~~~~~~~~-------l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          144 SQNQIS-RFPVELIKDGNK-------LPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CSSCCC-SCCGGGTC-----------CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCCcCC-eeCHHHhcCccc-------CCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCc
Confidence            999999 577765421000       345677777788887 4442         135566777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.31  E-value=5.6e-13  Score=140.06  Aligned_cols=155  Identities=16%  Similarity=0.170  Sum_probs=115.9

Q ss_pred             ceeEEEEEcCCC---CCcccCchhh-------cCCCCCCEEEccCCCCCC----CCCCCCCC-CCccEEeccCCcCCccC
Q 007860          423 AVVISQIDLGSQ---GLKGYISDKI-------SLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFTGSI  487 (587)
Q Consensus       423 ~~~l~~L~L~~n---~l~g~~p~~l-------~~l~~L~~L~Ls~N~l~g----~ip~~~~~-~~L~~L~Ls~N~l~g~i  487 (587)
                      ++.|+.|+|++|   .+.+.+|..+       ..+++|+.|+|++|.+++    .+|..+.. ++|++|+|++|++++..
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            456888999885   5566677665       688999999999999986    36667766 89999999999987443


Q ss_pred             Ccccc----CC---------CCCCEEEccCCcCc-ccCc---hhhhhcccCCceeecc-------------------ccc
Q 007860          488 PDSLT----SS---------SKLQLVLLNNNLLE-GRVP---EELYSIGVHGGAFDLS-------------------VVY  531 (587)
Q Consensus       488 P~~l~----~l---------~~L~~L~Ls~N~l~-g~ip---~~l~~~~~~L~~l~Ls-------------------l~~  531 (587)
                      +..+.    .+         ++|++|+|++|++. +.+|   ..+..+. +|+.|+|+                   +.+
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            43333    33         88999999999997 4455   3444544 58888776                   357


Q ss_pred             cceEECCCCccc----cccc------cccccccccccccC--------------CCCCCcEEEccCCCCCC
Q 007860          532 ICCIRRGRNDYD----FGLP------QDLMSLSAKRNRYQ--------------RQKSLMLLEMESQHAKG  578 (587)
Q Consensus       532 L~~L~L~~N~l~----~~~p------~~L~~L~l~~N~i~--------------~l~~L~~L~Ls~N~l~~  578 (587)
                      |+.|+|++|.++    ..+|      +.|+.|+|++|+|.              .+++|+.|+|++|+|+.
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            888999999885    2333      46888889988872              27889999999998887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.30  E-value=1.1e-12  Score=134.62  Aligned_cols=151  Identities=21%  Similarity=0.196  Sum_probs=109.1

Q ss_pred             eeEEEEEcCCCCCccc-CchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCC-cCCc-cCCccccCCCCCCE
Q 007860          424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTG-SIPDSLTSSSKLQL  499 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~  499 (587)
                      .+|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..|..++. ++|++|+|++| .+++ .+|..+..+++|+.
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            5678888888888765 7777888888888888888888777777777 88888888888 6765 36666777888888


Q ss_pred             EEccCC-cCccc-CchhhhhcccCCceeecc-----------------ccccceEECCCCc-cccccc------cccccc
Q 007860          500 VLLNNN-LLEGR-VPEELYSIGVHGGAFDLS-----------------VVYICCIRRGRND-YDFGLP------QDLMSL  553 (587)
Q Consensus       500 L~Ls~N-~l~g~-ip~~l~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~-l~~~~p------~~L~~L  553 (587)
                      |++++| .+++. ++..+..+..+|+.|+++                 +.+|+.|+|++|. +++..+      +.|+.|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            888888 77743 455555555357777665                 4467888888887 543322      456777


Q ss_pred             cccccc---------cCCCCCCcEEEccCC
Q 007860          554 SAKRNR---------YQRQKSLMLLEMESQ  574 (587)
Q Consensus       554 ~l~~N~---------i~~l~~L~~L~Ls~N  574 (587)
                      ++++|.         +..+++|+.|+|++|
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            777772         356777888887777

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.28  E-value=4.8e-12  Score=120.06  Aligned_cols=126  Identities=19%  Similarity=0.093  Sum_probs=99.4

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +++|+.|++++|.+.  .++.+..+++|+.|++++|.+++..|..++. ++|++|++++|++++..|..++.+++|+.|+
T Consensus        65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            346889999999775  3458999999999999999999888889998 9999999999999988899999999999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----cccccccccccccccCC
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRYQR  562 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i~~  562 (587)
                      +++|++.+.+| .+..+           .+|+.|+|++|+++..    -.+.|+.|++++|+|++
T Consensus       143 L~~n~~i~~~~-~l~~l-----------~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAITDIM-PLKTL-----------PELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCCCCG-GGGGC-----------SSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred             ccCCCCccccH-hhcCC-----------CCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence            99998333676 45443           3466677777777631    12568888999999864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.27  E-value=1.5e-11  Score=124.12  Aligned_cols=142  Identities=23%  Similarity=0.247  Sum_probs=114.9

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +..|+.|++++|.+... + .+..+++|+.|+|++|++++ +++ +.. ++|++|++++|++++ +|. +..+++|+.|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEE
Confidence            45689999999999854 3 58999999999999999995 444 777 999999999999984 554 89999999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc------CCCCCCcEEEc
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY------QRQKSLMLLEM  571 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i------~~l~~L~~L~L  571 (587)
                      +++|++.+ ++ .+..           +.+|+.|+|++|++++.    -.++|+.|++++|+|      ..+++|+.|+|
T Consensus       119 L~~n~i~~-~~-~l~~-----------l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L  185 (291)
T 1h6t_A          119 LEHNGISD-IN-GLVH-----------LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL  185 (291)
T ss_dssp             CTTSCCCC-CG-GGGG-----------CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             CCCCcCCC-Ch-hhcC-----------CCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEEC
Confidence            99999985 43 3444           33566777778877642    125789999999987      56789999999


Q ss_pred             cCCCCCCCCCCC
Q 007860          572 ESQHAKGLPTLP  583 (587)
Q Consensus       572 s~N~l~~~P~~~  583 (587)
                      ++|+|+.+|...
T Consensus       186 ~~N~i~~l~~l~  197 (291)
T 1h6t_A          186 SKNHISDLRALA  197 (291)
T ss_dssp             CSSCCCBCGGGT
T ss_pred             CCCcCCCChhhc
Confidence            999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=7.3e-12  Score=138.23  Aligned_cols=123  Identities=23%  Similarity=0.237  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      |+.|+|++|.|++ +|. ++.|++|+.|+|++|.|+ .+|..++. ++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            6779999999986 665 999999999999999999 88998888 999999999999995 77 799999999999999


Q ss_pred             CcCcccC-chhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEc
Q 007860          505 NLLEGRV-PEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEM  571 (587)
Q Consensus       505 N~l~g~i-p~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~L  571 (587)
                      |+|++.. |..++.+.           +|+.|+|++|++++ +|+.+..+      +..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~-----------~L~~L~L~~N~l~~-~~~~~~~l------~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCP-----------RLVLLNLQGNSLCQ-EEGIQERL------AEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCT-----------TCCEEECTTSGGGG-SSSCTTHH------HHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCC-----------CCCEEEecCCcCCC-CccHHHHH------HHHCcccCccCC
Confidence            9999755 88777644           47788888999985 44332221      233567777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=2.2e-11  Score=113.26  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             EEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCc
Q 007860          428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL  506 (587)
Q Consensus       428 ~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  506 (587)
                      .+++++|++. .+|..+.  ++|+.|+|++|+|++..|..+.. ++|++|+|++|+|++..+..+..+++|+.|+|++|+
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            3566666664 4554443  56666666666666555555655 666666666666664333334566666666666666


Q ss_pred             CcccCchh-hhhcccCCceeeccccccceEECCCCccc
Q 007860          507 LEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYD  543 (587)
Q Consensus       507 l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~  543 (587)
                      |+ .+|.. +..+           .+|+.|+|++|++.
T Consensus        93 l~-~l~~~~~~~l-----------~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LK-SIPRGAFDNL-----------KSLTHIYLYNNPWD  118 (174)
T ss_dssp             CC-CCCTTTTTTC-----------TTCSEEECCSSCBC
T ss_pred             cc-eeCHHHhccc-----------cCCCEEEeCCCCcc
Confidence            66 34433 3322           23455556666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=1.1e-12  Score=137.87  Aligned_cols=157  Identities=18%  Similarity=0.173  Sum_probs=127.4

Q ss_pred             ceeEEEEEcCCCCCcc----cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC--------------CCccEEeccCCcCC
Q 007860          423 AVVISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--------------QSLVRLDLSDNQFT  484 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--------------~~L~~L~Ls~N~l~  484 (587)
                      ++.|+.|+|++|.+.+    .++..+..+++|+.|+|++|.+++..+..+..              ++|++|+|++|+++
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            3568999999999997    58889999999999999999997443333332              58999999999998


Q ss_pred             -ccCC---ccccCCCCCCEEEccCCcCc--c---cCchhhhhcccCCceeecc------------------ccccceEEC
Q 007860          485 -GSIP---DSLTSSSKLQLVLLNNNLLE--G---RVPEELYSIGVHGGAFDLS------------------VVYICCIRR  537 (587)
Q Consensus       485 -g~iP---~~l~~l~~L~~L~Ls~N~l~--g---~ip~~l~~~~~~L~~l~Ls------------------l~~L~~L~L  537 (587)
                       +.+|   ..+..+++|+.|+|++|++.  |   .+|..+..+. +|+.|+|+                  +.+|++|+|
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence             5566   46778899999999999997  2   2333555554 69999887                  468999999


Q ss_pred             CCCccccc----c--------ccccccccccccccCC-------------CCCCcEEEccCCCCCCCC
Q 007860          538 GRNDYDFG----L--------PQDLMSLSAKRNRYQR-------------QKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       538 ~~N~l~~~----~--------p~~L~~L~l~~N~i~~-------------l~~L~~L~Ls~N~l~~~P  580 (587)
                      ++|++.+.    +        .+.|+.|+|++|+|..             +++|+.|+|++|++++..
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            99999753    1        3568999999999976             689999999999998765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.24  E-value=1e-11  Score=115.55  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=97.2

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCC-CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ..++.|+|++|.++. +|. +..+. +|+.|+|++|.+++.  +.+.. ++|++|+|++|++++..|..+..+++|+.|+
T Consensus        19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            358899999999984 554 55555 999999999999954  57777 9999999999999954334458999999999


Q ss_pred             ccCCcCcccCch--hhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCC
Q 007860          502 LNNNLLEGRVPE--ELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHA  576 (587)
Q Consensus       502 Ls~N~l~g~ip~--~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l  576 (587)
                      +++|++. .+|.  .+..           +.+|++|+|++|+++ .+|..-      ..-+..+++|+.||++.|.+
T Consensus        95 L~~N~i~-~~~~~~~l~~-----------l~~L~~L~l~~N~i~-~~~~~~------~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLAS-----------LKSLTYLCILRNPVT-NKKHYR------LYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGG-----------CTTCCEEECCSSGGG-GSTTHH------HHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcCC-cchhhHhhhc-----------CCCCCEEEecCCCCC-CcHhHH------HHHHHHCCccceeCCCcCCH
Confidence            9999996 5775  4443           345788888899987 455320      00134566777777777754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.24  E-value=9.9e-12  Score=138.11  Aligned_cols=142  Identities=25%  Similarity=0.267  Sum_probs=114.8

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +..|+.|+|++|.+.. ++ .+..|++|+.|+|++|.|++..|  +.. ++|+.|+|++|++++ +| .+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            3468889999999985 44 68999999999999999995444  667 999999999999994 55 699999999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc------CCCCCCcEEEc
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY------QRQKSLMLLEM  571 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i------~~l~~L~~L~L  571 (587)
                      |++|++.+ ++ .+..+           .+|+.|+|++|++++.    -.+.|+.|+|++|+|      ..+.+|+.|+|
T Consensus       116 Ls~N~l~~-l~-~l~~l-----------~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L  182 (605)
T 1m9s_A          116 LEHNGISD-IN-GLVHL-----------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL  182 (605)
T ss_dssp             CTTSCCCC-CG-GGGGC-----------TTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             ecCCCCCC-Cc-cccCC-----------CccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEEC
Confidence            99999984 43 34443           3466777777777642    125789999999987      56789999999


Q ss_pred             cCCCCCCCCCCC
Q 007860          572 ESQHAKGLPTLP  583 (587)
Q Consensus       572 s~N~l~~~P~~~  583 (587)
                      ++|+|+++|...
T Consensus       183 s~N~i~~l~~l~  194 (605)
T 1m9s_A          183 SKNHISDLRALA  194 (605)
T ss_dssp             CSSCCCBCGGGT
T ss_pred             cCCCCCCChHHc
Confidence            999999987643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=2.8e-11  Score=109.15  Aligned_cols=113  Identities=16%  Similarity=0.120  Sum_probs=94.4

Q ss_pred             CCCCCCEEEccCCCCC-CCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCc
Q 007860          446 LLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG  523 (587)
Q Consensus       446 ~l~~L~~L~Ls~N~l~-g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~  523 (587)
                      ..++|+.|++++|.++ +.+|..+.. ++|+.|++++|++++.  ..++.+++|+.|++++|++++.+|..+..+.    
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----   88 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP----   88 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT----
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC----
Confidence            3478999999999998 899998888 9999999999999965  6789999999999999999976777666544    


Q ss_pred             eeeccccccceEECCCCccccc-cccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860          524 AFDLSVVYICCIRRGRNDYDFG-LPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       524 ~l~Lsl~~L~~L~L~~N~l~~~-~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                             +|++|+|++|++++. .|..          +..+++|+.|++++|+++++|.
T Consensus        89 -------~L~~L~ls~N~i~~~~~~~~----------~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           89 -------NLTHLNLSGNKIKDLSTIEP----------LKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             -------TCCEEECTTSCCCSHHHHGG----------GGGCTTCCEEECTTCGGGGSTT
T ss_pred             -------CCCEEECCCCcCCChHHHHH----------HhhCCCCCEEeCcCCcccchHH
Confidence                   477888889998741 1232          4567799999999999999886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=3.3e-11  Score=111.61  Aligned_cols=104  Identities=23%  Similarity=0.296  Sum_probs=87.0

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      .+.|++++|.++. +|..+  .++|+.|+|++|+|++..|..+.. ++|++|+|++|+|++..|..+..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4579999999984 77665  389999999999999877888888 9999999999999966666678999999999999


Q ss_pred             CcCcccCchh-hhhcccCCceeeccccccceEECCCCcccc
Q 007860          505 NLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       505 N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      |+|++ +|.. +..+           .+|+.|+|++|++..
T Consensus        88 N~l~~-~~~~~~~~l-----------~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKS-IPRGAFDNL-----------KSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCC-CCTTTTTTC-----------TTCCEEECCSSCBCT
T ss_pred             CccCE-eCHHHhcCC-----------CCCCEEEeCCCCCCC
Confidence            99995 5554 4443           357788888999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=4.5e-11  Score=110.07  Aligned_cols=115  Identities=15%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             cCCCCCCEEEccCCCCC-CCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCC
Q 007860          445 SLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHG  522 (587)
Q Consensus       445 ~~l~~L~~L~Ls~N~l~-g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L  522 (587)
                      ...++|+.|++++|.++ +.+|..+.. ++|+.|++++|++++.  ..+..+++|+.|+|++|++.+.+|..+..+.   
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---   95 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP---   95 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT---
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC---
Confidence            34578999999999998 889988888 9999999999999955  7799999999999999999976776665544   


Q ss_pred             ceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860          523 GAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       523 ~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                              +|+.|+|++|++++ +|. +       ..+..+++|+.|+|++|+++++|.
T Consensus        96 --------~L~~L~Ls~N~l~~-~~~-~-------~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           96 --------NLTHLNLSGNKLKD-IST-L-------EPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             --------TCCEEECBSSSCCS-SGG-G-------GGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             --------CCCEEeccCCccCc-chh-H-------HHHhcCCCCCEEEeeCCcCcchHH
Confidence                    47778888999873 331 0       135667899999999999999886

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=5.2e-11  Score=110.72  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=93.7

Q ss_pred             CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860          400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (587)
Q Consensus       400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L  473 (587)
                      ..|...|.|....+.|......     ....++.|+|++|.|++..|..+..+++|+.|+|++|+|++..+..+.. ++|
T Consensus         4 ~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L   83 (174)
T 2r9u_A            4 AGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL   83 (174)
T ss_dssp             CSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence            4576666687778888765432     2346899999999999998999999999999999999999544444567 999


Q ss_pred             cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhh
Q 007860          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY  516 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  516 (587)
                      ++|+|++|+|++..+..+..+++|+.|+|++|++.. .+..+.
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~~~~  125 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC-ECRDIM  125 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT-TBGGGH
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc-ccccHH
Confidence            999999999995555559999999999999999984 554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.21  E-value=3.8e-12  Score=130.74  Aligned_cols=150  Identities=16%  Similarity=0.109  Sum_probs=116.8

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCC-CCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      ..++.|++++|.+.+.++. +..+++|+.|+|++|.+++. +|..+.. ++|++|+|++|++++..|..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4577888999988876665 66789999999999998865 7777777 8999999999999888888888899999999


Q ss_pred             ccCC-cCccc-CchhhhhcccCCceeecc----------------cc-ccceEECCCCc--cc-cccc------cccccc
Q 007860          502 LNNN-LLEGR-VPEELYSIGVHGGAFDLS----------------VV-YICCIRRGRND--YD-FGLP------QDLMSL  553 (587)
Q Consensus       502 Ls~N-~l~g~-ip~~l~~~~~~L~~l~Ls----------------l~-~L~~L~L~~N~--l~-~~~p------~~L~~L  553 (587)
                      |++| .+++. ++..+..+. +|+.|+++                +. +|++|+|++|.  ++ +.+|      ++|+.|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            9999 67752 555566655 58888886                34 88888888884  43 2222      468888


Q ss_pred             cccccc-c--------CCCCCCcEEEccCCC
Q 007860          554 SAKRNR-Y--------QRQKSLMLLEMESQH  575 (587)
Q Consensus       554 ~l~~N~-i--------~~l~~L~~L~Ls~N~  575 (587)
                      ++++|. +        ..+++|+.|+|++|.
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            888887 4        467888889988885

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.18  E-value=6.6e-11  Score=117.66  Aligned_cols=121  Identities=17%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      .+..|+.|+|++|.+++..+  +..+++|+.|+|++|++++ +|.... ++|+.|+|++|++++ +| .++.+++|+.|+
T Consensus        61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS  134 (263)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred             hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence            34579999999999997554  9999999999999999994 555333 899999999999995 54 599999999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----cccccccccccccccC
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRYQ  561 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i~  561 (587)
                      +++|++++ ++ .+..+.           +|+.|+|++|++++.    -.+.|+.|++++|++.
T Consensus       135 Ls~N~i~~-~~-~l~~l~-----------~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          135 IRNNKLKS-IV-MLGFLS-----------KLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CTTSCCCB-CG-GGGGCT-----------TCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred             CCCCcCCC-Ch-HHccCC-----------CCCEEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence            99999985 54 454433           455666666666532    1145777778888773

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=6.6e-11  Score=122.23  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             CCCCC-CcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccC-CCCCCCCCCCCCC-CCccEEec
Q 007860          402 CAPTN-WDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDL  478 (587)
Q Consensus       402 c~~~~-~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~-~~L~~L~L  478 (587)
                      |...| .|.|..+.|...               |+|+ .+|. +..+++|+.|+|++ |.|++..|..+.. ++|+.|+|
T Consensus         1 cp~~c~~C~~~~v~~~~~---------------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l   63 (347)
T 2ifg_A            1 CPDACCPHGSSGLRCTRD---------------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI   63 (347)
T ss_dssp             CCSSSCCSSSSCEECCSS---------------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC
T ss_pred             CCCcCccccCCEEEcCCC---------------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEEC
Confidence            44444 577776666533               1344 2455 66666666666664 6666444455555 66666666


Q ss_pred             cCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhh
Q 007860          479 SDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY  516 (587)
Q Consensus       479 s~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  516 (587)
                      ++|+|++..|..|+.|++|+.|+|++|+|+ .+|..++
T Consensus        64 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~  100 (347)
T 2ifg_A           64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTV  100 (347)
T ss_dssp             CSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTT
T ss_pred             CCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHc
Confidence            666666655556666666666666666666 3444433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.13  E-value=9.2e-12  Score=133.53  Aligned_cols=154  Identities=18%  Similarity=0.141  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCCccc----CchhhcCCCCCCEEEccCCCCCCCC----CCCCC-C-CCccEEeccCCcCCcc----CCcc
Q 007860          425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGTL----PSGLG-Q-QSLVRLDLSDNQFTGS----IPDS  490 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g~i----p~~~~-~-~~L~~L~Ls~N~l~g~----iP~~  490 (587)
                      .|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..    .+.+. . ++|++|++++|+++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            477788888888763    5677778888888888888876431    12222 3 7788888888888753    6666


Q ss_pred             ccCCCCCCEEEccCCcCcccCchhhhhc----ccCCceeecc------------------ccccceEECCCCcccccc--
Q 007860          491 LTSSSKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFDLS------------------VVYICCIRRGRNDYDFGL--  546 (587)
Q Consensus       491 l~~l~~L~~L~Ls~N~l~g~ip~~l~~~----~~~L~~l~Ls------------------l~~L~~L~L~~N~l~~~~--  546 (587)
                      +..+++|++|++++|.+....+..+...    ..+|+.|+++                  +.+|+.|+|++|++....  
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            7778888888888888865444444433    1357777776                  367888899888876421  


Q ss_pred             ---------ccccccccccccccC------------CCCCCcEEEccCCCCCC
Q 007860          547 ---------PQDLMSLSAKRNRYQ------------RQKSLMLLEMESQHAKG  578 (587)
Q Consensus       547 ---------p~~L~~L~l~~N~i~------------~l~~L~~L~Ls~N~l~~  578 (587)
                               .+.|+.|++++|+|+            .+++|++|+|++|+++.
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence                     237888888888874            47889999999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=8.2e-13  Score=125.51  Aligned_cols=63  Identities=24%  Similarity=0.303  Sum_probs=36.7

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860          443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       443 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      .+..+++|+.|+|++|.+++ +| .+.. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence            55666666666666666653 44 4444 56666666666665 45555555556666666666665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.10  E-value=1.2e-11  Score=132.54  Aligned_cols=84  Identities=19%  Similarity=0.163  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCCcccCchhhc-----CCCCCCEEEccCCCCCCCC----CCCCCC-CCccEEeccCCcCCccCCcccc--
Q 007860          425 VISQIDLGSQGLKGYISDKIS-----LLSNLVNLNLSTNSLGGTL----PSGLGQ-QSLVRLDLSDNQFTGSIPDSLT--  492 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~-----~l~~L~~L~Ls~N~l~g~i----p~~~~~-~~L~~L~Ls~N~l~g~iP~~l~--  492 (587)
                      .|+.|+|++|.+++..+..+.     .+++|+.|+|++|.+++..    +..+.. ++|++|++++|+++...+..+.  
T Consensus       114 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  193 (461)
T 1z7x_W          114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG  193 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH
Confidence            344455555554433222222     1334555555555544321    222222 4555555555554432222222  


Q ss_pred             ---CCCCCCEEEccCCcCc
Q 007860          493 ---SSSKLQLVLLNNNLLE  508 (587)
Q Consensus       493 ---~l~~L~~L~Ls~N~l~  508 (587)
                         .+++|+.|++++|.++
T Consensus       194 l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          194 LKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHSCCCCCEEECTTSCCB
T ss_pred             HhcCCCCceEEEccCCCCc
Confidence               1335555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.09  E-value=2.3e-10  Score=126.21  Aligned_cols=126  Identities=20%  Similarity=0.191  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      +..+.+++|.+....+      ..|+.|+|++|.|++ +|. ++. ++|+.|+|++|+|+ .+|..++.+++|+.|+|++
T Consensus       425 L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          425 LRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             hhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence            3344555565553222      258999999999995 786 888 99999999999999 9999999999999999999


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCcccccc-ccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGL-PQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~-p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      |+|++ +| .++.+           .+|+.|+|++|++++.. |..+          ..+++|+.|+|++|+|+++|...
T Consensus       496 N~l~~-lp-~l~~l-----------~~L~~L~Ls~N~l~~~~~p~~l----------~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          496 NALEN-VD-GVANL-----------PRLQELLLCNNRLQQSAAIQPL----------VSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SCCCC-CG-GGTTC-----------SSCCEEECCSSCCCSSSTTGGG----------GGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCC-Cc-ccCCC-----------CCCcEEECCCCCCCCCCCcHHH----------hcCCCCCEEEecCCcCCCCccHH
Confidence            99995 77 55553           35788899999998654 6654          45679999999999999998743

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.06  E-value=5.1e-10  Score=115.94  Aligned_cols=143  Identities=20%  Similarity=0.161  Sum_probs=75.3

Q ss_pred             EEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccC-CcCCccCCccccCCC-CCCEEEccC
Q 007860          428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSS-KLQLVLLNN  504 (587)
Q Consensus       428 ~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~-N~l~g~iP~~l~~l~-~L~~L~Ls~  504 (587)
                      .+.+..|++....|..+..+++|+.|++++|.+.+..+..+.. .++..|++++ |++...-+..+..+. .++.|+|++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            3455556666555555666666666666666665333333333 5555555544 344422222344433 456666666


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCC-Cccccccc-------ccccccccccccc-----CCCCCCcEEEc
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGR-NDYDFGLP-------QDLMSLSAKRNRY-----QRQKSLMLLEM  571 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~-N~l~~~~p-------~~L~~L~l~~N~i-----~~l~~L~~L~L  571 (587)
                      |+|+ .+|..++...           +|+.|++++ |.++ .+|       ++|+.|++++|+|     ..+..|+.|.+
T Consensus       164 N~i~-~i~~~~f~~~-----------~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~  230 (350)
T 4ay9_X          164 NGIQ-EIHNSAFNGT-----------QLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  230 (350)
T ss_dssp             SCCC-EECTTSSTTE-----------EEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred             cccc-CCChhhcccc-----------chhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence            6665 4555444332           344555553 3443 444       3466667777776     23456666665


Q ss_pred             c-CCCCCCCCCCC
Q 007860          572 E-SQHAKGLPTLP  583 (587)
Q Consensus       572 s-~N~l~~~P~~~  583 (587)
                      . .++++.+|...
T Consensus       231 l~~~~l~~lP~l~  243 (350)
T 4ay9_X          231 RSTYNLKKLPTLE  243 (350)
T ss_dssp             TTCTTCCCCCCTT
T ss_pred             ccCCCcCcCCCch
Confidence            3 34667777543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.05  E-value=4.6e-10  Score=104.23  Aligned_cols=114  Identities=20%  Similarity=0.222  Sum_probs=91.0

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhh-hhcc
Q 007860          443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIG  519 (587)
Q Consensus       443 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~~~  519 (587)
                      .+.++.+|+.|++++|.++ .+|. +..  ++|++|++++|++++.  ..++.+++|+.|+|++|++++ +|..+ ..+ 
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l-   87 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQAL-   87 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHC-
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcC-
Confidence            4567889999999999999 5654 555  5999999999999964  579999999999999999994 66554 443 


Q ss_pred             cCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860          520 VHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT  581 (587)
Q Consensus       520 ~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~  581 (587)
                                .+|+.|+|++|++. .+|. +       ..+..+++|+.|+|++|+++.+|.
T Consensus        88 ----------~~L~~L~L~~N~i~-~~~~-~-------~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           88 ----------PDLTELILTNNSLV-ELGD-L-------DPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             ----------TTCCEEECCSCCCC-CGGG-G-------GGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             ----------CCCCEEECCCCcCC-cchh-h-------HhhhcCCCCCEEEecCCCCCCcHh
Confidence                      35778888899986 5554 1       124567899999999999988875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.95  E-value=3.8e-11  Score=113.86  Aligned_cols=121  Identities=19%  Similarity=0.191  Sum_probs=90.9

Q ss_pred             hcCCCCCCEEEccCCCCCCCCCC------CCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhh
Q 007860          444 ISLLSNLVNLNLSTNSLGGTLPS------GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY  516 (587)
Q Consensus       444 l~~l~~L~~L~Ls~N~l~g~ip~------~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  516 (587)
                      +.....++.++++.+.++|.+|.      .+.. ++|++|+|++|++++ +| .+..+++|+.|++++|++. .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            66778888899999999988887      7777 999999999999995 88 8899999999999999998 6887666


Q ss_pred             hcccCCceeeccccccceEECCCCccccccc-----ccccccccccccc---------CCCCCCcEEEccCCCCCCC
Q 007860          517 SIGVHGGAFDLSVVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY---------QRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       517 ~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i---------~~l~~L~~L~Ls~N~l~~~  579 (587)
                      .+. +|+.|++          ++|++++ +|     +.|+.|++++|+|         ..+++|+.|++++|++++.
T Consensus        91 ~~~-~L~~L~L----------~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           91 VAD-TLEELWI----------SYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHH-HCSEEEE----------EEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCC-cCCEEEC----------cCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            544 3555544          4555542 22     3456666666655         4566777788877776443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.85  E-value=1.8e-10  Score=120.51  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=45.6

Q ss_pred             eEEEEEcCCCCCcccCchhh-cCCCCCCEEEccCCCCCCCCCCCC-----CC-CCccEEeccCCcCCc----cCCccccC
Q 007860          425 VISQIDLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL-----GQ-QSLVRLDLSDNQFTG----SIPDSLTS  493 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~-----~~-~~L~~L~Ls~N~l~g----~iP~~l~~  493 (587)
                      .|+.|+|++|.++..-...+ ..+++|+.|+|++|.++..-...+     .. ++|++|+|++|+++.    .++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            46666666666653322222 234566666666666653222222     12 556666666666652    23334455


Q ss_pred             CCCCCEEEccCCcCc
Q 007860          494 SSKLQLVLLNNNLLE  508 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~  508 (587)
                      +++|++|+|++|.+.
T Consensus       182 ~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          182 NTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CSSCCEEECTTSSCH
T ss_pred             CCCcCEEeCCCCCCC
Confidence            666666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.84  E-value=3.9e-09  Score=108.84  Aligned_cols=96  Identities=22%  Similarity=0.201  Sum_probs=79.7

Q ss_pred             ceeecCCCCCCceeEEEEEcCC-CCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCc
Q 007860          412 GITCHPNKDETAVVISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD  489 (587)
Q Consensus       412 gv~c~~~~~~~~~~l~~L~L~~-n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~  489 (587)
                      +++-.+. ...+.+|+.|+|++ |.|++..+..|..|++|+.|+|++|+|++..|..+.. ++|+.|+|++|+|++..|.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence            3443344 44456799999996 9999988899999999999999999999888888888 9999999999999954444


Q ss_pred             cccCCCCCCEEEccCCcCcc
Q 007860          490 SLTSSSKLQLVLLNNNLLEG  509 (587)
Q Consensus       490 ~l~~l~~L~~L~Ls~N~l~g  509 (587)
                      .+..++ |+.|+|.+|+|..
T Consensus        99 ~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             TTCSCC-CCEEECCSSCCCC
T ss_pred             HcccCC-ceEEEeeCCCccC
Confidence            455555 9999999999974

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.51  E-value=1.1e-07  Score=105.12  Aligned_cols=155  Identities=15%  Similarity=0.057  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCC---CCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG---GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~---g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  500 (587)
                      .|+.|+|++|.+.+ ++..+..+++|+.|++++....   +..+..+.. ++|+.|+++++.. +.+|..+..+++|++|
T Consensus       221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKL  298 (592)
T ss_dssp             TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEE
T ss_pred             CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEE
Confidence            46777777777765 6677777777887777753332   233445555 7888888888644 4778888889999999


Q ss_pred             EccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCC-----------Cccccc-------ccc
Q 007860          501 LLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGR-----------NDYDFG-------LPQ  548 (587)
Q Consensus       501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~-----------N~l~~~-------~p~  548 (587)
                      +|++|.+.+.....+.....+|+.|+++              +.+|++|+|++           |.++..       -.+
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ  378 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence            9999998754443433334468988885              57899999993           566532       125


Q ss_pred             ccccccccccccC---------CCCCCcEEEcc----CCCCCCCCC
Q 007860          549 DLMSLSAKRNRYQ---------RQKSLMLLEME----SQHAKGLPT  581 (587)
Q Consensus       549 ~L~~L~l~~N~i~---------~l~~L~~L~Ls----~N~l~~~P~  581 (587)
                      +|+.|++..|+++         .+++|+.|+|+    .|++++.|.
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            6888888888772         38889999996    788887653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.51  E-value=8.3e-09  Score=114.11  Aligned_cols=108  Identities=16%  Similarity=0.060  Sum_probs=74.8

Q ss_pred             CCccEEeccCCcCCccCCccccC-CCCCCEEEcc----CCcCccc-----CchhhhhcccCCceeecc------------
Q 007860          471 QSLVRLDLSDNQFTGSIPDSLTS-SSKLQLVLLN----NNLLEGR-----VPEELYSIGVHGGAFDLS------------  528 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~l~~-l~~L~~L~Ls----~N~l~g~-----ip~~l~~~~~~L~~l~Ls------------  528 (587)
                      ++|++|+++.|++++..+..++. +++|+.|+++    .|.+++.     ++..+..+. +|+.|+++            
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHH
Confidence            56777777666776655555554 6777777775    5666642     222233443 57777772            


Q ss_pred             -----ccccceEECCCCccccc-cc------ccccccccccccc---------CCCCCCcEEEccCCCCCCC
Q 007860          529 -----VVYICCIRRGRNDYDFG-LP------QDLMSLSAKRNRY---------QRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       529 -----l~~L~~L~L~~N~l~~~-~p------~~L~~L~l~~N~i---------~~l~~L~~L~Ls~N~l~~~  579 (587)
                           +.+|+.|+|++|++++. ++      ++|+.|++++|.|         ..+++|+.|+|++|+++..
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence                 45688999999988651 12      5688999999986         3578999999999998764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.45  E-value=2.1e-08  Score=104.67  Aligned_cols=145  Identities=16%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             EEEEEcCCCCCcccCchhhcCC-----CCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccc-----cC
Q 007860          426 ISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSL-----TS  493 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l-----~~  493 (587)
                      ++.|+|++|.++......+..+     ++|+.|+|++|.++......+..  .+|+.|+|++|+++..-...+     ..
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~  153 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD  153 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence            5567777777764433333322     56777777777765433333333  567777777777753322222     23


Q ss_pred             CCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc----------ccccccccccccccccC--
Q 007860          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF----------GLPQDLMSLSAKRNRYQ--  561 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~----------~~p~~L~~L~l~~N~i~--  561 (587)
                      .++|+.|+|++|.|+..-...+......       ..+|++|+|++|.+..          .-+..|+.|+|++|.|+  
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-------~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAG-------NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHT-------CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhc-------CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            4567777777777652111122211100       2345556666666542          11235666666666652  


Q ss_pred             ----------CCCCCcEEEccCCCCC
Q 007860          562 ----------RQKSLMLLEMESQHAK  577 (587)
Q Consensus       562 ----------~l~~L~~L~Ls~N~l~  577 (587)
                                ..+.|+.|+|++|.|+
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence                      2456666777666664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=2.8e-07  Score=94.20  Aligned_cols=85  Identities=9%  Similarity=0.032  Sum_probs=51.6

Q ss_pred             CCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccc-cccccc-------cccCCCCC
Q 007860          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLM-SLSAKR-------NRYQRQKS  565 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~-~L~l~~-------N~i~~l~~  565 (587)
                      +++|+.|+|++|++. .+|...+....+|+.++|..+ ++.  +....|.+  -.+|+ .+.+.+       ..|.++.+
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~--I~~~aF~~--~~~L~~~l~l~~~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT--IGQRVFSN--CGRLAGTLELPASVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTT--CTTCCEEEEECTTCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce--ehHHHhhC--ChhccEEEEEcccceEEchhhhhCCcc
Confidence            567888888888877 577665554434555555421 221  11222221  12344 444433       35688999


Q ss_pred             CcEEEccCCCCCCCCCCCC
Q 007860          566 LMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       566 L~~L~Ls~N~l~~~P~~~~  584 (587)
                      |+.|++++|+++.++...+
T Consensus       299 L~~l~l~~n~i~~I~~~aF  317 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELF  317 (329)
T ss_dssp             EEEEEECSSCCCEECTTTT
T ss_pred             CCEEEeCCCccCccchhhh
Confidence            9999999999998887654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.25  E-value=2.2e-07  Score=102.50  Aligned_cols=147  Identities=16%  Similarity=0.071  Sum_probs=92.2

Q ss_pred             eeEEEEEcCCC-CCccc-CchhhcCCCCCCEEEccCCCCCCCCCCCCC----C-CCccEEeccCCc--CCc-cCCccccC
Q 007860          424 VVISQIDLGSQ-GLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQ--FTG-SIPDSLTS  493 (587)
Q Consensus       424 ~~l~~L~L~~n-~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~----~-~~L~~L~Ls~N~--l~g-~iP~~l~~  493 (587)
                      ++|+.|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+.    . ++|+.|++++|.  +.. .++..+..
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~  209 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR  209 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred             CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence            45788888888 45432 445556888999999999887765444333    3 689999999886  221 11222345


Q ss_pred             CCCCCEEEccCCcCcccCchhhhhcccCCceeec--------------------------------------------cc
Q 007860          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL--------------------------------------------SV  529 (587)
Q Consensus       494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~L--------------------------------------------sl  529 (587)
                      +++|+.|++++|...+.+|..+..+. +|+.|++                                            .+
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~  288 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC  288 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCT-TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCC-cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence            68899999988833223555444443 3555542                                            13


Q ss_pred             cccceEECCCCccccc-------ccccccccccccccc---------CCCCCCcEEEcc
Q 007860          530 VYICCIRRGRNDYDFG-------LPQDLMSLSAKRNRY---------QRQKSLMLLEME  572 (587)
Q Consensus       530 ~~L~~L~L~~N~l~~~-------~p~~L~~L~l~~N~i---------~~l~~L~~L~Ls  572 (587)
                      .+|++|+|++|.+...       -.++|+.|++++| +         ..+++|++|+|+
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence            5677788877775531       1245777777766 3         246778888773

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=4.9e-07  Score=89.40  Aligned_cols=82  Identities=26%  Similarity=0.255  Sum_probs=59.8

Q ss_pred             EEcCCCCC---cccCchhhcCCCCCCEEEccCCCCCC--CCCCCCCC-CCccEEeccCCcCCccCCccccCCC--CCCEE
Q 007860          429 IDLGSQGL---KGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS--KLQLV  500 (587)
Q Consensus       429 L~L~~n~l---~g~~p~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L  500 (587)
                      ++++.|..   .+.++....++++|+.|+|++|+|++  .+|..+.. ++|+.|+|++|+|++.  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            45556632   22233333578899999999999996  45555556 8999999999999854  3355554  89999


Q ss_pred             EccCCcCcccCc
Q 007860          501 LLNNNLLEGRVP  512 (587)
Q Consensus       501 ~Ls~N~l~g~ip  512 (587)
                      +|++|++++.+|
T Consensus       226 ~L~~Npl~~~~~  237 (267)
T 3rw6_A          226 WLDGNSLCDTFR  237 (267)
T ss_dssp             ECTTSTTGGGCS
T ss_pred             EccCCcCccccC
Confidence            999999998776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.16  E-value=1.3e-07  Score=104.29  Aligned_cols=104  Identities=13%  Similarity=0.013  Sum_probs=62.4

Q ss_pred             CCccEEeccCCcCCccCCcccc-CCCCCCEEEcc--C----CcCcccCc------hhhhhcccCCceeecc---------
Q 007860          471 QSLVRLDLSDNQFTGSIPDSLT-SSSKLQLVLLN--N----NLLEGRVP------EELYSIGVHGGAFDLS---------  528 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~L~Ls--~----N~l~g~ip------~~l~~~~~~L~~l~Ls---------  528 (587)
                      ++|+.|.++.|++++..+..+. .+++|+.|+++  +    |.++ ..|      .-+..+. +|+.|+|+         
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~-~L~~L~L~~~l~~~~~~  449 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCK-DLRRLSLSGLLTDKVFE  449 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCT-TCCEEECCSSCCHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCC-CccEEeecCcccHHHHH
Confidence            4566666655666544444443 46777777777  3    4454 222      1123333 57777775         


Q ss_pred             -----ccccceEECCCCcccccc-------cccccccccccccc---------CCCCCCcEEEccCCCC
Q 007860          529 -----VVYICCIRRGRNDYDFGL-------PQDLMSLSAKRNRY---------QRQKSLMLLEMESQHA  576 (587)
Q Consensus       529 -----l~~L~~L~L~~N~l~~~~-------p~~L~~L~l~~N~i---------~~l~~L~~L~Ls~N~l  576 (587)
                           ..+|+.|+|++|.+++..       .++|+.|++++|.+         ..+++|+.|+|++|++
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence                 456777888777775421       24577777777766         2466788888887766

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=7.2e-06  Score=83.66  Aligned_cols=93  Identities=18%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             CCccEEeccCCcCCccCC-ccccCCCCCCEEEccCCcCcccCchhhhhcccCCc-eeeccccccceEECCCCcccccccc
Q 007860          471 QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG-AFDLSVVYICCIRRGRNDYDFGLPQ  548 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~-~l~Lsl~~L~~L~L~~N~l~~~~p~  548 (587)
                      ++|+.|+|++|+++ .+| ..|..+++|+.|+|.+| +. .|+...+....+|+ .+++.. +++  .+....|.+  ..
T Consensus       226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~--~I~~~aF~~--c~  297 (329)
T 3sb4_A          226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVT--AIEFGAFMG--CD  297 (329)
T ss_dssp             TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCC--EECTTTTTT--CT
T ss_pred             CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cce--EEchhhhhC--Cc
Confidence            47889999998888 455 46888999999999988 66 57766555444577 776652 222  112222221  23


Q ss_pred             ccccccccccc--------cCCCCCCcEEEc
Q 007860          549 DLMSLSAKRNR--------YQRQKSLMLLEM  571 (587)
Q Consensus       549 ~L~~L~l~~N~--------i~~l~~L~~L~L  571 (587)
                      +|+.|++..|+        |.++.+|+.+..
T Consensus       298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          298 NLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            34555554443        467778887753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.02  E-value=2.1e-06  Score=89.06  Aligned_cols=147  Identities=10%  Similarity=0.045  Sum_probs=84.9

Q ss_pred             eeEEEEEcCCCCC---------cccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCcccc--
Q 007860          424 VVISQIDLGSQGL---------KGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT--  492 (587)
Q Consensus       424 ~~l~~L~L~~n~l---------~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~--  492 (587)
                      ++|+.|.+..+..         .+.+...+..+++|+.|.|++|.-. .++. +..++|+.|+|..+.+....-..++  
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHc
Confidence            4577787765533         1235566788899999999887311 3443 3238999999998887644333343  


Q ss_pred             CCCCCCEEEccC--CcCcccC-chhhhhcccCCceeeccccccceEECCCCccccc---------ccccccccccccccc
Q 007860          493 SSSKLQLVLLNN--NLLEGRV-PEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG---------LPQDLMSLSAKRNRY  560 (587)
Q Consensus       493 ~l~~L~~L~Ls~--N~l~g~i-p~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~---------~p~~L~~L~l~~N~i  560 (587)
                      .+++|+.|+|+.  |...|.. ...+.....   .  -..++|++|+|.+|.+...         ..+.|+.|+|+.|.|
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~---~--~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS---K--DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSC---T--TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHh---c--CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            688999999863  3322211 111111100   0  0134556666666655421         123566666666665


Q ss_pred             C------------CCCCCcEEEccCCCCC
Q 007860          561 Q------------RQKSLMLLEMESQHAK  577 (587)
Q Consensus       561 ~------------~l~~L~~L~Ls~N~l~  577 (587)
                      .            .+++|+.|+|++|.|+
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            2            2466777777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.98  E-value=7.5e-07  Score=83.25  Aligned_cols=112  Identities=13%  Similarity=0.149  Sum_probs=77.0

Q ss_pred             eEEEEEcCCC-CCcc----cCchhhcCCCCCCEEEccCCCCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCcc
Q 007860          425 VISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (587)
Q Consensus       425 ~l~~L~L~~n-~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~  490 (587)
                      .|+.|+|++| .+..    .+...+...++|++|+|++|.+...    +...+.. +.|++|+|++|++...    +.+.
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            4778999998 8863    2455667778899999999998742    2233334 7899999999998743    4556


Q ss_pred             ccCCCCCCEEEc--cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860          491 LTSSSKLQLVLL--NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD  543 (587)
Q Consensus       491 l~~l~~L~~L~L--s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~  543 (587)
                      +...++|++|+|  ++|.+...-...+.+....       ...|++|+|+.|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~-------n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-------NTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-------CSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh-------CCCcCEEeccCCCCC
Confidence            777788999999  7888874322333332211       345778888888774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=3.1e-06  Score=83.63  Aligned_cols=76  Identities=25%  Similarity=0.224  Sum_probs=63.6

Q ss_pred             eeEEEEEcCCCCCcc--cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C--CccEEeccCCcCCccCCc-------cc
Q 007860          424 VVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q--SLVRLDLSDNQFTGSIPD-------SL  491 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~--~L~~L~Ls~N~l~g~iP~-------~l  491 (587)
                      +.|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|++.  ..+.. .  +|++|+|++|.+.+.+|.       .+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            468999999999998  5678888999999999999999954  34554 4  899999999999988873       35


Q ss_pred             cCCCCCCEEE
Q 007860          492 TSSSKLQLVL  501 (587)
Q Consensus       492 ~~l~~L~~L~  501 (587)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            6788888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.90  E-value=1.2e-06  Score=81.81  Aligned_cols=126  Identities=10%  Similarity=0.114  Sum_probs=83.6

Q ss_pred             cCchhhcCCCCCCEEEccCC-CCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCccccCCCCCCEEEccCCcCc
Q 007860          439 YISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       439 ~~p~~l~~l~~L~~L~Ls~N-~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      .+...+...+.|+.|+|++| .+...    +...+.. ++|++|+|++|++...    +.+.+...++|++|+|++|.|.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            45566788899999999999 88732    3344555 8899999999999742    3445566688999999999997


Q ss_pred             ccCchhhhhcccCCceeeccccccceEEC--CCCccccccccccccccccccccCCCCCCcEEEccCCCCC
Q 007860          509 GRVPEELYSIGVHGGAFDLSVVYICCIRR--GRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAK  577 (587)
Q Consensus       509 g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L--~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~  577 (587)
                      ..--..+......       ...|++|+|  +.|.+...-...|.      ..+...+.|++|+|++|.+.
T Consensus       107 ~~g~~~l~~~L~~-------n~~L~~L~L~~~~N~i~~~g~~~l~------~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQS-------NTSLIELRIDNQSQPLGNNVEMEIA------NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGG-------CSSCCEEECCCCSSCCCHHHHHHHH------HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHh-------CCCceEEEecCCCCCCCHHHHHHHH------HHHHhCCCcCEEeccCCCCC
Confidence            4322233332211       346888888  77887632111111      11233457888888888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.60  E-value=0.00023  Score=74.70  Aligned_cols=150  Identities=12%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      |+.+.|.. .+...-+..|.++++|+.++|++|+++ .+|..... .+|+.+.|..+ ++..-...|..+++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            55677764 555555567888888888888888887 66665555 78888888744 5533345677778888888876


Q ss_pred             CcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccc----ccc-------cccccccccc---
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDF----GLP-------QDLMSLSAKR---  557 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~----~~p-------~~L~~L~l~~---  557 (587)
                      | +. .++...+.. ..|+.+.+.             +.+|+.+.+.+|.+..    .++       .+|+.+.+..   
T Consensus       236 ~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~  312 (401)
T 4fdw_A          236 N-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIR  312 (401)
T ss_dssp             T-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCC
T ss_pred             C-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceE
Confidence            4 43 455554444 346666554             4567777776665430    111       3455555442   


Q ss_pred             ----cccCCCCCCcEEEccCCCCCCCCCC
Q 007860          558 ----NRYQRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       558 ----N~i~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                          ..|.++.+|+.+.|.. +++.++..
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~-~l~~I~~~  340 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPA-NVTQINFS  340 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECT-TCCEECTT
T ss_pred             EEhhhhhcCCCCccEEEECc-cccEEcHH
Confidence                3457788888888854 36655544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.39  E-value=0.00018  Score=74.32  Aligned_cols=141  Identities=11%  Similarity=0.097  Sum_probs=93.0

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCC--C-CCccEEeccC--CcCCcc-----CCccc--
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG--Q-QSLVRLDLSD--NQFTGS-----IPDSL--  491 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~-~~L~~L~Ls~--N~l~g~-----iP~~l--  491 (587)
                      +.|+.|+|+++.-. .++. + .+++|+.|+|..+.+.......++  . ++|+.|+|+.  |...|.     +...+  
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            56899999887311 2333 3 389999999999887643333333  4 8999999863  222221     11122  


Q ss_pred             cCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----cc------cccccccccccccC
Q 007860          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LP------QDLMSLSAKRNRYQ  561 (587)
Q Consensus       492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p------~~L~~L~l~~N~i~  561 (587)
                      ..+++|++|+|++|.+....+..+.....        +++|++|+|+.|.+...    ++      +.|+.|++++|.|+
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~--------~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDI--------LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSS--------GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCcc--------CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            35789999999999997555555554322        45788888888887641    22      46888999999883


Q ss_pred             -----CCCC--CcEEEccCCC
Q 007860          562 -----RQKS--LMLLEMESQH  575 (587)
Q Consensus       562 -----~l~~--L~~L~Ls~N~  575 (587)
                           .+..  ..+++++.++
T Consensus       321 d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          321 DEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHHCCSEEECCSBC
T ss_pred             HHHHHHHHHHcCCEEEecCCc
Confidence                 1221  3678888876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.33  E-value=0.00096  Score=69.94  Aligned_cols=150  Identities=13%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.+.|..+ +...-...|.++++|+.++|..| ++ .++..... .+|+.+.|. +.++..-+..|..+++|+.+++.
T Consensus       204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred             ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence            3566677633 55455567778888888888764 44 45554444 778888884 44553335567788888888888


Q ss_pred             CCcCc----ccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccc-------cccccCCCCCCcEEEcc
Q 007860          504 NNLLE----GRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSA-------KRNRYQRQKSLMLLEME  572 (587)
Q Consensus       504 ~N~l~----g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l-------~~N~i~~l~~L~~L~Ls  572 (587)
                      +|.+.    ..++...+....+|+.+.|. ++++.  +....|.+  -.+|+.+.+       ..+-|.++ +|+.+.++
T Consensus       280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~--I~~~aF~~--c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          280 GSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI--LGQGLLGG--NRKVTQLTIPANVTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             SSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE--ECTTTTTT--CCSCCEEEECTTCCEECTTSSSSS-CCCEEEEC
T ss_pred             CccccCCcccEECHHHhhCCccCCeEEeC-CceEE--EhhhhhcC--CCCccEEEECccccEEcHHhCCCC-CCCEEEEc
Confidence            87764    12444444433356666665 22332  22223322  123334433       23456778 99999999


Q ss_pred             CCCCCCCCCCCC
Q 007860          573 SQHAKGLPTLPL  584 (587)
Q Consensus       573 ~N~l~~~P~~~~  584 (587)
                      +|.+..++...+
T Consensus       354 ~n~~~~l~~~~F  365 (401)
T 4fdw_A          354 GTTPPQVFEKVW  365 (401)
T ss_dssp             CSSCCBCCCSSC
T ss_pred             CCCCcccccccc
Confidence            998887776543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.38  E-value=0.00056  Score=62.77  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCC-CCCCCCCCCCC-----CCccEEeccCCc-CCccCCccccCCCCC
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-----QSLVRLDLSDNQ-FTGSIPDSLTSSSKL  497 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~-----~~L~~L~Ls~N~-l~g~iP~~l~~l~~L  497 (587)
                      .|+.|||+++.++..--..+..+++|+.|+|+++. ++..--..++.     ++|++|+|+++. ++..-=..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58999999999875545567889999999999985 55321111221     258899998874 663222346678888


Q ss_pred             CEEEccCCc
Q 007860          498 QLVLLNNNL  506 (587)
Q Consensus       498 ~~L~Ls~N~  506 (587)
                      ++|+|+++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.31  E-value=0.00085  Score=62.77  Aligned_cols=81  Identities=12%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             eEEEEEcCCC-CCcc----cCchhhcCCCCCCEEEccCCCCCCCCCCCCC----C-CCccEEeccCCcCCcc----CCcc
Q 007860          425 VISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQFTGS----IPDS  490 (587)
Q Consensus       425 ~l~~L~L~~n-~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~----~-~~L~~L~Ls~N~l~g~----iP~~  490 (587)
                      .|+.|+|++| .|..    .+-+.+..-+.|+.|+|++|.+...--..++    . +.|++|+|+.|+|...    +-+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            3677899885 7652    3455677778899999999998743333333    3 7899999999998732    3334


Q ss_pred             ccCCCCCCEEEccCC
Q 007860          491 LTSSSKLQLVLLNNN  505 (587)
Q Consensus       491 l~~l~~L~~L~Ls~N  505 (587)
                      +..-+.|+.|+|++|
T Consensus       122 L~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTTTCCCSEEECCCC
T ss_pred             HhhCCceeEEECCCC
Confidence            556677999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.16  E-value=0.0095  Score=51.72  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860          471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      .+|++|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            34566666666666322334556677777777777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.90  E-value=0.0067  Score=52.68  Aligned_cols=54  Identities=28%  Similarity=0.458  Sum_probs=37.6

Q ss_pred             EEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCC-CC-CCccEEeccCCcCC
Q 007860          428 QIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFT  484 (587)
Q Consensus       428 ~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-~~-~~L~~L~Ls~N~l~  484 (587)
                      .++.++++++ ..+|..+  -.+|+.|+|++|+|+ .+|... .. ++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            3566666665 3455432  236889999999998 566554 44 88999999999775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.37  E-value=0.0068  Score=56.57  Aligned_cols=94  Identities=13%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             CchhhcCCCCCCEEEccCC-CCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCccccCCCCCCEEEccCCcCcc
Q 007860          440 ISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEG  509 (587)
Q Consensus       440 ~p~~l~~l~~L~~L~Ls~N-~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~g  509 (587)
                      +..-+.+-+.|+.|+|++| .+...    +-+.+.. ..|+.|+|++|++...    +-+.+..-+.|++|+|+.|.|..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3334556688999999986 77521    3334555 8899999999999732    23344456889999999999974


Q ss_pred             cCchhhhhcccCCceeeccccccceEECCCC
Q 007860          510 RVPEELYSIGVHGGAFDLSVVYICCIRRGRN  540 (587)
Q Consensus       510 ~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N  540 (587)
                      .--..+.+....       ...|+.|+|++|
T Consensus       113 ~Ga~ala~aL~~-------N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLV-------TQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTT-------TCCCSEEECCCC
T ss_pred             HHHHHHHHHHhh-------CCceeEEECCCC
Confidence            322333333221       345788888754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.27  E-value=0.014  Score=53.49  Aligned_cols=57  Identities=5%  Similarity=0.058  Sum_probs=28.9

Q ss_pred             CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCc-CCccCCccccCC----CCCCEEEccCC
Q 007860          449 NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSS----SKLQLVLLNNN  505 (587)
Q Consensus       449 ~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~Ls~N  505 (587)
                      .|+.|||+++.++..--..+.. ++|++|+|+++. ++..-=..++.+    ++|++|+|+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            5667777776665332233444 666666666653 442111123332    24666666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.19  E-value=0.61  Score=48.00  Aligned_cols=86  Identities=14%  Similarity=0.344  Sum_probs=50.6

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      .|+.+.+..+... .-...+.+++.|+.+.+. +.++ .+++. +.. .+|+.+.|..+ ++-.-..+|..+.+|+.+.|
T Consensus       266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            3555666544332 334566777888888875 3455 44443 334 77888888754 44222346777788888887


Q ss_pred             cCCcCcccCchhhh
Q 007860          503 NNNLLEGRVPEELY  516 (587)
Q Consensus       503 s~N~l~g~ip~~l~  516 (587)
                      ..+ +. .|....+
T Consensus       342 p~s-v~-~I~~~aF  353 (394)
T 4gt6_A          342 PSS-VT-KIPESAF  353 (394)
T ss_dssp             CTT-CC-BCCGGGG
T ss_pred             Ccc-cC-EEhHhHh
Confidence            544 54 4554443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.59  E-value=0.64  Score=47.83  Aligned_cols=85  Identities=6%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             CchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhc
Q 007860          440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI  518 (587)
Q Consensus       440 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~  518 (587)
                      -...|.++..|+.+.+..+... .-...+.. .+|+.+.+.. .++..-...|..+.+|+.++|..+ ++ .|....+.-
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~  332 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAG  332 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT
T ss_pred             ccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhC
Confidence            3456788999999999776543 33334445 8999999964 555233346788999999999765 54 455554443


Q ss_pred             ccCCceeecc
Q 007860          519 GVHGGAFDLS  528 (587)
Q Consensus       519 ~~~L~~l~Ls  528 (587)
                      ..+|+.+.+.
T Consensus       333 C~~L~~i~ip  342 (394)
T 4gt6_A          333 CEQLERIAIP  342 (394)
T ss_dssp             CTTCCEEEEC
T ss_pred             CCCCCEEEEC
Confidence            2346655553

>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A

Probab=89.62  E-value=7.3  Score=33.71  Aligned_cols=93  Identities=13%  Similarity=0.097  Sum_probs=55.3

Q ss_pred             CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEee
Q 007860           87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS  166 (587)
Q Consensus        87 ~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~  166 (587)
                      |..-.|++.+.+.|.|.|++.+.-+..    ..+.++|+|||..+......-.+.+-.........+.-+.|.=.|.|..
T Consensus        39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~  114 (144)
T 2w47_A           39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA  114 (144)
T ss_dssp             TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred             CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence            444588888878899999999875432    2578999999986433222211111111111222233455554555553


Q ss_pred             C-CCCCceeeeEEeEecC
Q 007860          167 F-ATDPPVIASLEVQQID  183 (587)
Q Consensus       167 ~-~~~~pfIn~iEi~~l~  183 (587)
                      . ..+.|-|.-|+|.+.+
T Consensus       115 ~~~~g~~niD~i~v~~~~  132 (144)
T 2w47_A          115 IASDGGPNVDYLKVFSAN  132 (144)
T ss_dssp             CSTTCCCEEEEEEEEECT
T ss_pred             eCCCCCEEEeEEEEEeCC
Confidence            2 3456999999998754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.48  E-value=1.1  Score=45.48  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=26.3

Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          442 DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       442 ~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      ..+.++.+|+.+.+..+ +. .++.. +.. .+|+.+.+.++.++-.-...|.++.+|+.+.|.
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            34444555555555332 22 22222 222 455555555554442222344455555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.44  E-value=2.5  Score=43.22  Aligned_cols=57  Identities=18%  Similarity=0.108  Sum_probs=26.2

Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          442 DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       442 ~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      ..+..+..++.+.+..+.    ++.. +.. .+|+.+.+..+ ++..-...|..+++|+.++|.
T Consensus       270 ~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             CTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             cccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence            344455555555544432    2222 222 55666655543 331222345556666666664

>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*

Probab=86.20  E-value=12  Score=31.50  Aligned_cols=90  Identities=14%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             CCCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEe
Q 007860           86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY  165 (587)
Q Consensus        86 ~~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~  165 (587)
                      .|..-.|++.+...|.|.|++.+..+.  +  ..+.++|++||.........-.+.+-....-....+.-+.|.=.|.|.
T Consensus        37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~--~--~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~  112 (127)
T 2vzp_A           37 AGSSVEWTVTVPSAGTYDVVVRYANGT--T--TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAV  112 (127)
T ss_dssp             TTCEEEEEEEESSSEEEEEEEEEECCS--S--SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCEEEEEEEEEcCC--C--CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEE
Confidence            344558999887889999999987653  1  257899999998753322221111111111112223335555445554


Q ss_pred             eC-CCCCceeeeEEe
Q 007860          166 SF-ATDPPVIASLEV  179 (587)
Q Consensus       166 ~~-~~~~pfIn~iEi  179 (587)
                      .. ..+.|-|.-|+|
T Consensus       113 ~~~~~~~~niD~i~v  127 (127)
T 2vzp_A          113 ATTANGGPNVDKITL  127 (127)
T ss_dssp             ECSTTCCCEEEEEEC
T ss_pred             EeCCCCCeEEEEEEC
Confidence            42 345677777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=85.23  E-value=1.4  Score=44.89  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=8.4

Q ss_pred             ccCCCCCCEEEccCCcCc
Q 007860          491 LTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       491 l~~l~~L~~L~Ls~N~l~  508 (587)
                      |..+++|+.+.+.++.+.
T Consensus       282 F~~c~~L~~i~l~~~~i~  299 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIE  299 (379)
T ss_dssp             TTTCTTCCEEEECCTTCC
T ss_pred             cccccccccccccccccc
Confidence            344444555554444443

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}

Probab=83.72  E-value=16  Score=31.61  Aligned_cols=92  Identities=11%  Similarity=-0.021  Sum_probs=53.6

Q ss_pred             CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEee
Q 007860           87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS  166 (587)
Q Consensus        87 ~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~  166 (587)
                      |..-.|++.+.+.|.|.|++.+.-+..    ..+.++|++||...-. ...-.+.+-....-....+.-+.|.=.|.|..
T Consensus        38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~-v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~  112 (145)
T 2w3j_A           38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKT-LDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVA  112 (145)
T ss_dssp             TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEE-ECCCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred             CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeE-EEecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence            444588888878899999999874422    2578999999976522 11111111111111122233355554555554


Q ss_pred             C-CCCCceeeeEEeEecC
Q 007860          167 F-ATDPPVIASLEVQQID  183 (587)
Q Consensus       167 ~-~~~~pfIn~iEi~~l~  183 (587)
                      . +.+.|-|.-|+|.+.+
T Consensus       113 ~~~~g~~niD~i~v~~~~  130 (145)
T 2w3j_A          113 ETADGLANIDSIRVTGNG  130 (145)
T ss_dssp             CSTTCCCEEEEEEECSTT
T ss_pred             ecCcCCEEEEEEEEEcCC
Confidence            3 2466999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	587
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 9/149 (6%)

Query: 360 SGLENYALVPNDLSTVP--EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHP 417
           + L +  L  N +S +     +  +  LK        +       A TN +  E      
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL 476
           +       ++ + L    +       +S L+ L  L  + N +     S L    ++  L
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 477 DLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
               NQ +   P  L + +++  + LN+ 
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            LG   +   +S   + L  +  L      +      G+    +L +++ S+NQ T   P
Sbjct: 28  VLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP 83

Query: 489 DSLTSSSKLQ 498
             L + +KL 
Sbjct: 84  --LKNLTKLV 91

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 454 NLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
           +L  N + GTLP GL Q + L  L++S N   G IP              NN  L G
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 19/94 (20%), Positives = 38/94 (40%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN 454
           + +  D        A   +     K   +  ++ +DL +  + G +   ++ L  L +LN
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 455 LSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           +S N+L G +P G   Q       ++N+     P
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 37/137 (27%)

Query: 376 PEQVIAMRALKESLRVPDRM-GWN--GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLG 432
           P+   A+  +K+ L  P  +  W    D C  T    W G+ C  +              
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT----WLGVLCDTD-------------- 46

Query: 433 SQGLKGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDN-QFTGSIP 488
                       +    + NL+LS  +L     +PS L     L  L +       G IP
Sbjct: 47  ------------TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 489 DSLTSSSKLQLVLLNNN 505
            ++   ++L  + + + 
Sbjct: 95  PAIAKLTQLHYLYITHT 111

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 477 DLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
           DL +N+  G++P  LT    L  + ++ N L G +P+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 5e-08
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 10/131 (7%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN 454
             W           +        N+    + IS   L   G++          S L  L 
Sbjct: 316 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 375

Query: 455 LSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS-----SKLQLVLLNN 504
           L+   +  +    L + L    SL  LDLS+N    +    L  S       L+ ++L +
Sbjct: 376 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 435

Query: 505 NLLEGRVPEEL 515
                 + + L
Sbjct: 436 IYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 9e-07
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 12/118 (10%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN 454
           +  + +                P      + ++  D+        ++  +    +L  L+
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELD 403

Query: 455 LSTNSLGGTLPSGLGQQ------SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           LS N LG      L +        L +L L D  ++  + D L       L     +L
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ-----ALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 426 ISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLS 479
           I  +D+  + L     ++ + LL     + L    L       + S L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 480 DNQFTGSIPDSLTS---SSKLQLVLLN 503
            N+        +     +   ++  L+
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 449 NLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLL 502
           ++ +L++    L     + L    Q    + L D   T      I  +L  +  L  + L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 503 NNNLLEGRVPEEL 515
            +N L       +
Sbjct: 63  RSNELGDVGVHCV 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
             +L  LN+S N L   LP+      L RL  S N     +P+   +   L+ + +  N 
Sbjct: 283 PPSLEELNVSNNKL-IELPALPP--RLERLIASFNHLA-EVPELPQN---LKQLHVEYNP 335

Query: 507 LEGRVPEELYSIG 519
           L    P+   S+ 
Sbjct: 336 LRE-FPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 9e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           + +  +L   L  L  S N L   +P     Q+L +L +  N      PD   S   L++
Sbjct: 296 LIELPALPPRLERLIASFNHLA-EVPELP--QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG-SI 487
           +DL  + L   ++ ++ L   ++      + +   L        +  +DLS++     ++
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
              L+  SKLQ + L    L   +   L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTL 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            L  +   L+L  N +           ++L  L L +N+ +   P +     KL+ + L+
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQ 563
            N L+  +PE++          +  +  +        +    +      L +        
Sbjct: 88  KNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 564 KSLMLLEMESQHAKGLPTLPLN 585
           + +  L         + T+P  
Sbjct: 147 QGMKKLSYIRIADTNITTIPQG 168

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++S +++ + +N    +L   LP  L +     L LS+N        +L   ++L  + L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK-DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 503 NNN 505
           +  
Sbjct: 63  DRA 65

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSN--LVN 452
           +    D        +   I      +   + ++   L ++G    + D  S L N  L  
Sbjct: 219 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA-AVVDAFSKLENIGLQT 277

Query: 453 LNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           L L  N +       L          L+ L+L+ N+F     D +    ++        L
Sbjct: 278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGEL 336

Query: 507 LEGRVPEE 514
            E    EE
Sbjct: 337 DELDDMEE 344

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 6/113 (5%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-----QSLVRLDLSDNQFT 484
            + ++  K   +  +    ++  + LS N++G      L +     + L   + SD    
Sbjct: 14  AITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRR 537
               +   +   L   LL    L      +              +     +  
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
            L  L L+ N       +      L +   S ++   S+P  L   +   L  L  N L+
Sbjct: 226 ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQ 282

Query: 509 G 509
           G
Sbjct: 283 G 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	587
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.38
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.36
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.24
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.23
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.15
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.14
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.2
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.63
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.29
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	97.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.91
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.64
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	83.03

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=2.2e-23  Score=211.09  Aligned_cols=203  Identities=23%  Similarity=0.376  Sum_probs=145.6

Q ss_pred             CchHHHHHHHHHHHhcCCCCC-CCCC--CCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcc--cCchhhcCCC
Q 007860          374 TVPEQVIAMRALKESLRVPDR-MGWN--GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLLS  448 (587)
Q Consensus       374 ~~p~~~~aL~~lk~~~~~~~~-~~w~--g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g--~~p~~l~~l~  448 (587)
                      +.|+|..||+++|+.+..+.. .+|.  +|+|.    |.|.||+|+...  ...+|+.|+|+++++.|  .+|+++++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~----~~w~gv~C~~~~--~~~~v~~L~L~~~~l~g~~~lp~~l~~L~   76 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC----CcCCCeEEeCCC--CcEEEEEEECCCCCCCCCCCCChHHhcCc
Confidence            679999999999998865543 4785  36653    479999997543  23479999999999988  5889999999


Q ss_pred             CCCEEEccC-CCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccC------------------------CCCCCEEEc
Q 007860          449 NLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS------------------------SSKLQLVLL  502 (587)
Q Consensus       449 ~L~~L~Ls~-N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~------------------------l~~L~~L~L  502 (587)
                      +|++|+|++ |+++|.+|+.++. ++|++|+|++|++.+..|..+..                        +++|+.+++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            999999986 8999999999988 99999999998887765554444                        445555555


Q ss_pred             cCCcCcccCchhhhhcccCCceeecc-------------------------------------ccccceEECCCCccccc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLS-------------------------------------VVYICCIRRGRNDYDFG  545 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Ls-------------------------------------l~~L~~L~L~~N~l~~~  545 (587)
                      ++|.+.|.+|..++.+...++.++++                                     +.+++.+++++|.+.+.
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55555555555554443323333332                                     34566666666666654


Q ss_pred             cc-----ccccccccccccc--------CCCCCCcEEEccCCCCC-CCCCC
Q 007860          546 LP-----QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAK-GLPTL  582 (587)
Q Consensus       546 ~p-----~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~-~~P~~  582 (587)
                      +|     +.++.|+|++|+|        ..+++|+.|+|++|+|+ .+|+.
T Consensus       237 ~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            33     4567777888876        45677888888888888 46653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.64  E-value=8.8e-18  Score=169.30  Aligned_cols=241  Identities=19%  Similarity=0.200  Sum_probs=130.8

Q ss_pred             eeEEEEEECCcccccc-ceecccCCcceeeeeeeEeecCC-ccEEEEEcccchhhhhhcccccccccCCCCCchHH-HHH
Q 007860          305 QRVFDILVNDKNVTRV-DIFNSVGSFAAYSWHYVAKNLSS-TELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIA  381 (587)
Q Consensus       305 ~r~F~V~in~~~l~~~-di~~~~~~~~~~~~~l~~l~l~~-n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~-~~a  381 (587)
                      .|+-.+.+.+..+.+. .++...+    -...++.+++++ |.+.|.+|+.++.  +..++.+.+..+.+..++.. ...
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~----~L~~L~~L~Ls~~N~l~g~iP~~i~~--L~~L~~L~Ls~N~l~~~~~~~~~~  123 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETTEESCCCGGGGG--CTTCSEEEEEEECCEEECCGGGGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHh----cCcccccccccccccccccccccccc--ccccchhhhccccccccccccccc
Confidence            4777888877655432 2222111    223567777776 7888888888877  77888888877664433221 111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCC-CEEEccCCCC
Q 007860          382 MRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNL-VNLNLSTNSL  460 (587)
Q Consensus       382 L~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L-~~L~Ls~N~l  460 (587)
                      +..++....     .++          ...+..  +.....++.++.+++++|.+.|.+|+.+..+..+ +.++++.|++
T Consensus       124 ~~~L~~l~l-----~~N----------~~~~~~--p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         124 IKTLVTLDF-----SYN----------ALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CTTCCEEEC-----CSS----------EEESCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             hhhhccccc-----ccc----------cccccC--chhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            111110000     000          000000  0001112234445555555555555555555443 4555555555


Q ss_pred             CCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCC
Q 007860          461 GGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRN  540 (587)
Q Consensus       461 ~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N  540 (587)
                      +|..|..+....+..++++.+.+.|.+|..++.+++|+.+++++|.+.+.+| .++.           ..+|+.|+|++|
T Consensus       187 ~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~-----------~~~L~~L~Ls~N  254 (313)
T d1ogqa_         187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-----------SKNLNGLDLRNN  254 (313)
T ss_dssp             EEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCC-----------CTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-----------ccccccccCccC
Confidence            5555544444333345555555555555555555555555555555554322 2222           456778888899


Q ss_pred             cccccccc------ccccccccccccC-------CCCCCcEEEccCCC-CCCCC
Q 007860          541 DYDFGLPQ------DLMSLSAKRNRYQ-------RQKSLMLLEMESQH-AKGLP  580 (587)
Q Consensus       541 ~l~~~~p~------~L~~L~l~~N~i~-------~l~~L~~L~Ls~N~-l~~~P  580 (587)
                      +++|.+|.      +|+.|+|++|+|+       .+++|+.+++++|+ +.|.|
T Consensus       255 ~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             eecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCC
Confidence            99888874      4667788999873       46788889999997 67654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.8e-16  Score=146.78  Aligned_cols=171  Identities=14%  Similarity=0.181  Sum_probs=131.6

Q ss_pred             CCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccC-chhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCcc
Q 007860          402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYI-SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV  474 (587)
Q Consensus       402 c~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~  474 (587)
                      |...|.|.|..|.|.......     +..++.|+|++|.|++.+ +..|.++++|+.|+|++|.+.+..+..+.. ++|+
T Consensus         2 CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            666667899999998665322     346899999999998755 567899999999999999999888888888 9999


Q ss_pred             EEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccc-----ccc
Q 007860          475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGL-----PQD  549 (587)
Q Consensus       475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~-----p~~  549 (587)
                      +|+|++|+|+...|..|.++++|++|+|++|+|++ +|+..+..          +.+|++|+|++|++....     ...
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~----------l~~L~~l~L~~N~~~~~~~~~~~~~~  150 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEH----------LNSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTT----------CTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccc-cCHHHhcC----------CcccccccccccccccccchHHHhhh
Confidence            99999999997777789999999999999999995 55544332          335677888888886422     233


Q ss_pred             ccccccccccc-----CCCCCCcEEEccCCCCCCCCCCC
Q 007860          550 LMSLSAKRNRY-----QRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       550 L~~L~l~~N~i-----~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      +..+.+..|.+     ..++.++.++|+.|.++-.++..
T Consensus       151 l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         151 LRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             HHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC--
T ss_pred             hhhhcccCCCeEeCCChhhcCCEeeecCHhhCcCCCCCC
Confidence            45555666665     45667777889999988766543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=1.5e-14  Score=144.60  Aligned_cols=106  Identities=22%  Similarity=0.267  Sum_probs=83.6

Q ss_pred             CCCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860          400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (587)
Q Consensus       400 ~pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L  473 (587)
                      .-|+-.|.|.|..+.|.......     .+.++.|+|++|+|+...+..|.++++|++|++++|.+....|..+.. ++|
T Consensus         2 ~~~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L   81 (305)
T d1xkua_           2 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL   81 (305)
T ss_dssp             CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence            45777777999999998654322     356899999999999666678999999999999999999766778888 999


Q ss_pred             cEEeccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      +.|++++|+++ .+|..+.  ..++.|++..|.+.
T Consensus        82 ~~L~l~~n~l~-~l~~~~~--~~l~~L~~~~n~l~  113 (305)
T d1xkua_          82 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT  113 (305)
T ss_dssp             CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred             CEecccCCccC-cCccchh--hhhhhhhccccchh
Confidence            99999999998 6665432  45566666666555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.5e-15  Score=143.38  Aligned_cols=145  Identities=22%  Similarity=0.175  Sum_probs=105.3

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      +.++.|+|++|.|++..+..|.++++|++|+|++|+|+ .+|. ++. ++|++|+|++|+++ .+|..+..+++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-ccccccccccccccccc
Confidence            46899999999999877788999999999999999998 6664 355 99999999999999 56778999999999999


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc-------ccccccccccccc--------CCCCCCc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP-------QDLMSLSAKRNRY--------QRQKSLM  567 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p-------~~L~~L~l~~N~i--------~~l~~L~  567 (587)
                      ++|.+.+ ++........+++.|+          +++|.+. .+|       ..+..|++++|+|        ..+.+|+
T Consensus       108 ~~~~~~~-~~~~~~~~l~~l~~L~----------l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_         108 SFNRLTS-LPLGALRGLGELQELY----------LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             CSSCCCC-CCSSTTTTCTTCCEEE----------CTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             cccccce-eecccccccccccccc----------ccccccc-eeccccccccccchhcccccccccccCccccccccccc
Confidence            9999984 5544444333444444          4444443 121       2344445555544        3456666


Q ss_pred             EEEccCCCCCCCCCCC
Q 007860          568 LLEMESQHAKGLPTLP  583 (587)
Q Consensus       568 ~L~Ls~N~l~~~P~~~  583 (587)
                      .|+|++|+|+.+|+..
T Consensus       176 ~L~Ls~N~L~~lp~~~  191 (266)
T d1p9ag_         176 TLLLQENSLYTIPKGF  191 (266)
T ss_dssp             EEECCSSCCCCCCTTT
T ss_pred             eeecccCCCcccChhH
Confidence            6677766666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.7e-14  Score=139.59  Aligned_cols=108  Identities=19%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             CCCCCCCcC---ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C
Q 007860          401 PCAPTNWDA---WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q  471 (587)
Q Consensus       401 pc~~~~~~~---~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~  471 (587)
                      ||...|.|.   +.-|.|...+..     .+..++.|+|++|+|+...+..|.++++|++|++++|++.+..+..+.. .
T Consensus         1 ~cp~~C~C~~~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~   80 (284)
T d1ozna_           1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (284)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCCEEcCCCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc
Confidence            565555452   335777654321     2235789999999999777778999999999999999987443333333 3


Q ss_pred             CccEEecc-CCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860          472 SLVRLDLS-DNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       472 ~L~~L~Ls-~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      .++.++.. .|.++...|..+..+++|+.|++++|.+.
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~  118 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cccccccccccccccccchhhcccccCCEEecCCcccc
Confidence            44444332 23333222333444444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.8e-13  Score=132.88  Aligned_cols=199  Identities=15%  Similarity=0.128  Sum_probs=111.9

Q ss_pred             EEEEECCccccccceecccCCcceeeeeeeEeecCCccEEEEEccc-chhhhhhcccccccccCCCCCchHHHHH-HHHH
Q 007860          308 FDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPV-VGAALISGLENYALVPNDLSTVPEQVIA-MRAL  385 (587)
Q Consensus       308 F~V~in~~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~-~~s~~Ln~lei~~~~~~~~~~~p~~~~a-L~~l  385 (587)
                      +.|..+++.++.++     ..+.   ...+.+++++|+++ .+++. ...  +..++.+.+..+.+..++..... +..+
T Consensus        14 ~~v~c~~~~L~~iP-----~~ip---~~~~~L~Ls~N~i~-~i~~~~f~~--l~~L~~L~ls~n~l~~i~~~~~~~~~~~   82 (284)
T d1ozna_          14 VTTSCPQQGLQAVP-----VGIP---AASQRIFLHGNRIS-HVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALL   82 (284)
T ss_dssp             CEEECCSSCCSSCC-----TTCC---TTCSEEECTTSCCC-EECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             eEEEcCCCCCCccC-----CCCC---CCCCEEECcCCcCC-CCCHHHhhc--cccccccccccccccccccccccccccc
Confidence            45666666554332     0111   12456788889887 66653 444  66677777776665544432110 0000


Q ss_pred             HHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCC
Q 007860          386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP  465 (587)
Q Consensus       386 k~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip  465 (587)
                      +.......  .            .-..+.  +.....+.+|+.|++++|.+....+..+..+++|+.+++++|++++..+
T Consensus        83 ~~l~~~~~--~------------~~~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~  146 (284)
T d1ozna_          83 EQLDLSDN--A------------QLRSVD--PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (284)
T ss_dssp             CEEECCSC--T------------TCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccccc--c------------cccccc--chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh
Confidence            00000000  0            000000  0111223456777777777776666667777777777777777774444


Q ss_pred             CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860          466 SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       466 ~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      ..+.. ++|+.|++++|++++..|..+..+++|+.+++++|++.+..|..+..+.           +|+.|++++|++.+
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~-----------~L~~L~l~~N~i~~  215 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-----------RLMTLYLFANNLSA  215 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------TCCEEECCSSCCSC
T ss_pred             hHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhh-----------hccccccccccccc
Confidence            45555 7777777777777766666677777777777777777765555554433           35566666676663

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1.2e-12  Score=121.51  Aligned_cols=129  Identities=24%  Similarity=0.369  Sum_probs=98.5

Q ss_pred             EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      +.++.++++++ .+|..+.  +++++|+|++|+|++.++.. +.. ++|++|+|++|++.+..+..+..+++|+.|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46899999998 6777653  68999999999998766554 455 9999999999999988889999999999999999


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCC
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~  579 (587)
                      |+|.+ +|+..+.-          +.+|++|+|++|+|++ +|+.         .|..+.+|++|+|++|.+...
T Consensus        88 N~l~~-l~~~~F~~----------l~~L~~L~L~~N~l~~-i~~~---------~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          88 NKIKE-ISNKMFLG----------LHQLKTLNLYDNQISC-VMPG---------SFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCE-ECSSSSTT----------CTTCCEEECCSSCCCE-ECTT---------SSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccc-cCHHHHhC----------CCcccccccCCccccc-cCHH---------HhcCCcccccccccccccccc
Confidence            99994 55543321          3357788888999884 4432         134455666666666666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=125.56  Aligned_cols=176  Identities=13%  Similarity=0.137  Sum_probs=127.0

Q ss_pred             CcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEecc
Q 007860          407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLS  479 (587)
Q Consensus       407 ~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls  479 (587)
                      .|....+.|......     ....++.|+|++|.|+...+..|.++++|++|+|++|.+...++.. +.. +.+++|.+.
T Consensus         7 ~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1           7 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             EECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            477888999765422     2346899999999999666667999999999999999998766654 455 899999876


Q ss_pred             -CCcCCccCCccccCCCCCCEEEccCCcCcccCch-hhhhcccCCceeecc---------------ccccceEECCCCcc
Q 007860          480 -DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFDLS---------------VVYICCIRRGRNDY  542 (587)
Q Consensus       480 -~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l  542 (587)
                       .|++....+..+..+++|++|++++|.+.. .+. ........+..+...               ...++.|++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCS-CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhcc-cccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence             478887777888999999999999999973 332 222211122222211               23577789999988


Q ss_pred             cccccc------cccc-cccccccc--------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860          543 DFGLPQ------DLMS-LSAKRNRY--------QRQKSLMLLEMESQHAKGLPTLPL  584 (587)
Q Consensus       543 ~~~~p~------~L~~-L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~~~  584 (587)
                      + .++.      .+.. +.+.+|+|        .++.+|+.|+|++|+|+.+|...+
T Consensus       166 ~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         166 Q-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             C-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSC
T ss_pred             c-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHH
Confidence            7 3332      1222 24566655        567899999999999999998654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-12  Score=126.39  Aligned_cols=130  Identities=22%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .|+.|+|++|++++ ++..+..+++|+.|++++|.+.+..+..+.. .++++|++++|.++...+..+..+++|+.|+++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            34445555555542 2334445555555555555554333333333 455555555555543333333444555555555


Q ss_pred             CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCC
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAK  577 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~  577 (587)
                      +|++++..+..+..           +.+|++|+|++|+|+ .+|+++          ..+.+|+.|+|++|.+.
T Consensus       157 ~N~l~~~~~~~~~~-----------l~~L~~L~Ls~N~L~-~lp~~~----------~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         157 NNNLTELPAGLLNG-----------LENLDTLLLQENSLY-TIPKGF----------FGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TSCCSCCCTTTTTT-----------CTTCCEEECCSSCCC-CCCTTT----------TTTCCCSEEECCSCCBC
T ss_pred             cccccccCcccccc-----------ccccceeecccCCCc-ccChhH----------CCCCCCCEEEecCCCCC
Confidence            55554322222221           223455555566655 455432          23456777777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=5.2e-12  Score=117.86  Aligned_cols=138  Identities=22%  Similarity=0.360  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .++.|++++|++.. + +.+..+++|++|++++|++++ +++ ++. ++|++|++++|.+. .+|. +.++++|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-cccc-ccccccccccccc
Confidence            46778888888873 3 347788888888888888884 333 666 88888888888877 4553 7788888888888


Q ss_pred             CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc-----ccccccccccccc------CCCCCCcEEEcc
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY------QRQKSLMLLEME  572 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i------~~l~~L~~L~Ls  572 (587)
                      +|.+.. ++ .+..           +.+|+.|++++|++. .++     +.++.|++.+|++      .++++|+.|+++
T Consensus       115 ~~~~~~-~~-~~~~-----------l~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         115 NNQITD-ID-PLKN-----------LTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDIS  180 (199)
T ss_dssp             SSCCCC-CG-GGTT-----------CTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             cccccc-cc-ccch-----------hhhhHHhhhhhhhhc-ccccccccccccccccccccccCCccccCCCCCCEEECC
Confidence            888863 32 2333           234556666666655 222     4567777777765      678899999999


Q ss_pred             CCCCCCCCCC
Q 007860          573 SQHAKGLPTL  582 (587)
Q Consensus       573 ~N~l~~~P~~  582 (587)
                      +|+|+.+|..
T Consensus       181 ~N~i~~i~~l  190 (199)
T d2omxa2         181 SNKVSDISVL  190 (199)
T ss_dssp             SSCCCCCGGG
T ss_pred             CCCCCCCccc
Confidence            9999998753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1.4e-11  Score=115.83  Aligned_cols=139  Identities=24%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .++.|++++|.+... + .+..+++|++|+|++|++++ ++ .++. ++|+.|++++|+++ .+| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccccc
Confidence            467788888887643 2 36778888888888888874 44 2455 78888888888887 455 47778888888888


Q ss_pred             CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc------CCCCCCcEEEccC
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY------QRQKSLMLLEMES  573 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i------~~l~~L~~L~Ls~  573 (587)
                      +|.+. .++ .+..+. .++          .++++.|.++..    -.+.|+.+++++|++      ..+++|++|+|++
T Consensus       121 ~~~~~-~~~-~l~~l~-~l~----------~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         121 HNGIS-DIN-GLVHLP-QLE----------SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK  187 (210)
T ss_dssp             TSCCC-CCG-GGGGCT-TCC----------EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ccccc-ccc-cccccc-ccc----------ccccccccccccccccccccccccccccccccccccccCCCCCCEEECCC
Confidence            88776 333 333332 233          334444443321    012344555555543      5567788888888


Q ss_pred             CCCCCCCCC
Q 007860          574 QHAKGLPTL  582 (587)
Q Consensus       574 N~l~~~P~~  582 (587)
                      |+|+.+|..
T Consensus       188 N~i~~l~~l  196 (210)
T d1h6ta2         188 NHISDLRAL  196 (210)
T ss_dssp             SCCCBCGGG
T ss_pred             CCCCCChhh
Confidence            888777643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1.5e-11  Score=116.92  Aligned_cols=151  Identities=17%  Similarity=0.294  Sum_probs=114.2

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..|+.|++.+|+++. + +.+..|++|+.|++++|.+++..|  +.. ++|+.|++++|.++ .++ .+.++++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccccccc
Confidence            457889999999884 4 458899999999999999985433  666 89999999999887 555 4788899999999


Q ss_pred             cCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc------
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------  560 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------  560 (587)
                      +++...+. +. +.... .++.+.++            ..+|++|++++|.+....+    +.|+.|++++|++      
T Consensus       115 ~~~~~~~~-~~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l  191 (227)
T d1h6ua2         115 TSTQITDV-TP-LAGLS-NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL  191 (227)
T ss_dssp             TTSCCCCC-GG-GTTCT-TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             cccccccc-ch-hcccc-chhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhh
Confidence            99888742 22 22222 34444444            5668899999998764222    5688999999987      


Q ss_pred             CCCCCCcEEEccCCCCCCCCCCC
Q 007860          561 QRQKSLMLLEMESQHAKGLPTLP  583 (587)
Q Consensus       561 ~~l~~L~~L~Ls~N~l~~~P~~~  583 (587)
                      ..+++|++|+|++|+|+.+|...
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~l~  214 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSPLA  214 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGGGT
T ss_pred             cCCCCCCEEECcCCcCCCCcccc
Confidence            56889999999999999988543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=1.2e-11  Score=106.33  Aligned_cols=100  Identities=26%  Similarity=0.344  Sum_probs=83.7

Q ss_pred             EEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCc
Q 007860          428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL  506 (587)
Q Consensus       428 ~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  506 (587)
                      .|+|++|+++ .++ .+..+++|++|++++|+|+ .+|+.++. ++|+.|++++|+++ .+| .++.+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            6999999998 455 4899999999999999998 78888888 99999999999999 566 48999999999999999


Q ss_pred             CcccCch--hhhhcccCCceeeccccccceEECCCCcccc
Q 007860          507 LEGRVPE--ELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       507 l~g~ip~--~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      +. .+|.  .+..           +.+|+.|++++|+++.
T Consensus        77 i~-~~~~~~~l~~-----------~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQ-QSAAIQPLVS-----------CPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CC-SSSTTGGGGG-----------CTTCCEEECTTSGGGG
T ss_pred             cC-CCCCchhhcC-----------CCCCCEEECCCCcCCc
Confidence            98 4542  3333           3457788888999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=1.9e-11  Score=104.99  Aligned_cols=107  Identities=21%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             CEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccc
Q 007860          451 VNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSV  529 (587)
Q Consensus       451 ~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl  529 (587)
                      |.|+|++|+++ .++ .+.. ++|++|++++|+++ .+|+.++.+++|+.|++++|+++ .+|. +..           +
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~-----------l   64 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VAN-----------L   64 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GTT-----------C
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-ccc-----------c
Confidence            57999999999 666 4777 99999999999999 78989999999999999999998 4653 444           3


Q ss_pred             cccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCC
Q 007860          530 VYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       530 ~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      .+|++|++++|+++ .+|. +.       .+..+++|+.|++++|+++..+..
T Consensus        65 ~~L~~L~l~~N~i~-~~~~-~~-------~l~~~~~L~~L~l~~N~i~~~~~~  108 (124)
T d1dcea3          65 PRLQELLLCNNRLQ-QSAA-IQ-------PLVSCPRLVLLNLQGNSLCQEEGI  108 (124)
T ss_dssp             SSCCEEECCSSCCC-SSST-TG-------GGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             cccCeEECCCCccC-CCCC-ch-------hhcCCCCCCEEECCCCcCCcCccH
Confidence            45788899999987 3432 11       245677999999999999876643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=5.3e-11  Score=118.20  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=19.7

Q ss_pred             EeecCCccEEEEEcccchhhhhhcccccccccCCCCCchH
Q 007860          338 AKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE  377 (587)
Q Consensus       338 ~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~  377 (587)
                      .++-++.+|+ ++|+...    ..++++.+..+.+..+|+
T Consensus        14 ~~~C~~~~L~-~lP~~l~----~~l~~L~Ls~N~i~~l~~   48 (305)
T d1xkua_          14 VVQCSDLGLE-KVPKDLP----PDTALLDLQNNKITEIKD   48 (305)
T ss_dssp             EEECTTSCCC-SCCCSCC----TTCCEEECCSSCCCCBCT
T ss_pred             EEEecCCCCC-ccCCCCC----CCCCEEECcCCcCCCcCh
Confidence            3445555565 5565443    246666676666655553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.16  E-value=1.3e-10  Score=116.68  Aligned_cols=76  Identities=25%  Similarity=0.340  Sum_probs=59.6

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      +.|+.|+|++|+|+ .+|+.   +.+|+.|++++|+++ .++.-  .+.|++|++++|++. .+|. ++.+++|+.|+++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh--ccccccccccccccc-cccc-hhhhccceeeccc
Confidence            45788899999888 66754   457888899998887 45421  157999999999998 7785 6888999999998


Q ss_pred             CCcCc
Q 007860          504 NNLLE  508 (587)
Q Consensus       504 ~N~l~  508 (587)
                      +|.+.
T Consensus       129 ~~~~~  133 (353)
T d1jl5a_         129 NNSLK  133 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            88765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.5e-11  Score=107.59  Aligned_cols=105  Identities=19%  Similarity=0.219  Sum_probs=84.0

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCc-cccCCCCCCEEEc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLL  502 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L  502 (587)
                      .++.|+|++|+|+. ++..+..+++|+.|+|++|.++ .++ .+.. ++|++|++++|+++ .+|+ .+..+++|++|++
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCcccccccccccccee
Confidence            47899999999984 5766788999999999999999 564 5677 99999999999999 4554 4567999999999


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD  543 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~  543 (587)
                      ++|++. .++. +..+..        +++|++|++++|+++
T Consensus        95 ~~N~i~-~~~~-l~~l~~--------l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          95 TNNSLV-ELGD-LDPLAS--------LKSLTYLCILRNPVT  125 (162)
T ss_dssp             CSCCCC-CGGG-GGGGGG--------CTTCCEEECCSSGGG
T ss_pred             cccccc-cccc-cccccc--------ccccchhhcCCCccc
Confidence            999997 4443 222221        456888899999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.2e-11  Score=107.17  Aligned_cols=115  Identities=18%  Similarity=0.175  Sum_probs=87.2

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccC
Q 007860          443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH  521 (587)
Q Consensus       443 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~  521 (587)
                      .+.++.+|++|+|++|+|+ .+|..... ++|+.|+|++|+++ .++ .+..+++|+.|++++|+++ .+|..++..   
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~---   85 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQA---   85 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHH---
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCcccccc---
Confidence            3567889999999999999 67765555 99999999999999 665 5899999999999999998 566555432   


Q ss_pred             CceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCC
Q 007860          522 GGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLP  580 (587)
Q Consensus       522 L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P  580 (587)
                             +.+|++|+|++|+++ .++.    +    ..+..+++|+.|++++|.++..|
T Consensus        86 -------l~~L~~L~L~~N~i~-~~~~----l----~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          86 -------LPDLTELILTNNSLV-ELGD----L----DPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             -------CTTCCEEECCSCCCC-CGGG----G----GGGGGCTTCCEEECCSSGGGGST
T ss_pred             -------ccccccceecccccc-cccc----c----cccccccccchhhcCCCcccccc
Confidence                   234777888888886 2221    1    12455677778888887776665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=1.2e-10  Score=118.76  Aligned_cols=149  Identities=19%  Similarity=0.247  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      .+..+++++|.+++..|  +..+++|+.|++++|.++ .++ .+.. ++|+.|++++|++++. +. ++.+++|+.|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCccCCC-Cc-ccccccCCEeecc
Confidence            35566677776665433  345566777777777666 333 3444 6677777777776643 22 5666677777777


Q ss_pred             CCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc------C
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------Q  561 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------~  561 (587)
                      +|++.+ +++ +..+. .++.++++            +.+++.|++++|++++..+    ++|+.|++++|+|      .
T Consensus       272 ~~~l~~-~~~-~~~~~-~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~  348 (384)
T d2omza2         272 ANQISN-ISP-LAGLT-ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA  348 (384)
T ss_dssp             SSCCCC-CGG-GTTCT-TCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred             CcccCC-CCc-ccccc-ccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHc
Confidence            776663 332 22222 23333333            4567788888888875221    4688888888876      5


Q ss_pred             CCCCCcEEEccCCCCCCCCCC
Q 007860          562 RQKSLMLLEMESQHAKGLPTL  582 (587)
Q Consensus       562 ~l~~L~~L~Ls~N~l~~~P~~  582 (587)
                      ++++|++|+|++|+|+++|..
T Consensus       349 ~l~~L~~L~l~~N~l~~l~~l  369 (384)
T d2omza2         349 NLTNINWLSAGHNQISDLTPL  369 (384)
T ss_dssp             GCTTCCEEECCSSCCCBCGGG
T ss_pred             CCCCCCEEECCCCcCCCChhh
Confidence            677899999999999988753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=1.1e-10  Score=109.76  Aligned_cols=132  Identities=23%  Similarity=0.270  Sum_probs=100.2

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +++|+.|+|++|.+++. + .++.|++|+.|++++|+++ .+| .+.. ++|+.|++++|.+. .++ .+..+++|+.++
T Consensus        67 l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEE
T ss_pred             CCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-ccc-cccccccccccc
Confidence            35688999999999864 3 3789999999999999998 465 4666 99999999999987 444 588899999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc----ccccccccccccc------CCCCCCcEEEc
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------QRQKSLMLLEM  571 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------~~l~~L~~L~L  571 (587)
                      +++|.+++ . ..+..+           .+|+.+++++|++++..+    ++|+.|++++|+|      .++++|+.|+|
T Consensus       141 ~~~n~l~~-~-~~~~~l-----------~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         141 LGNNKITD-I-TVLSRL-----------TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  207 (210)
T ss_dssp             CCSSCCCC-C-GGGGGC-----------TTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred             cccccccc-c-cccccc-----------ccccccccccccccccccccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEc
Confidence            99999974 2 233333           345666667777663211    4677888888876      57788999998


Q ss_pred             cC
Q 007860          572 ES  573 (587)
Q Consensus       572 s~  573 (587)
                      ++
T Consensus       208 s~  209 (210)
T d1h6ta2         208 FS  209 (210)
T ss_dssp             EE
T ss_pred             cC
Confidence            74

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=3.9e-10  Score=104.80  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=91.7

Q ss_pred             ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (587)
Q Consensus       423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  501 (587)
                      +++|+.|+|++|.+++..+  ++++++|+.|++++|.+. .++ .+.. +.|+.|++++|.+.. + ..+..+++|+.|+
T Consensus        61 l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLE  134 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             CCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHHhh
Confidence            3568999999999986443  899999999999999988 555 3667 999999999999874 3 3478899999999


Q ss_pred             ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccc----ccccccccccccccCC
Q 007860          502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGL----PQDLMSLSAKRNRYQR  562 (587)
Q Consensus       502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~----p~~L~~L~l~~N~i~~  562 (587)
                      +++|++. .++ .+..+.           +|+.|++++|+++..-    .++|+.|++++|+|+.
T Consensus       135 l~~n~l~-~~~-~l~~~~-----------~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         135 LSSNTIS-DIS-ALSGLT-----------SLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCC-CCG-GGTTCT-----------TCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhhc-ccc-cccccc-----------cccccccccccccCCccccCCCCCCEEECCCCCCCC
Confidence            9999997 454 344433           4556666666665311    1568888888888744

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=5.9e-10  Score=113.51  Aligned_cols=130  Identities=20%  Similarity=0.320  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      ++.|++++|.+++..+  +..+++|+.|++++|.+++ +++ +.. ..++.+.++.|++++ + ..+..+++++.|++++
T Consensus       243 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~  316 (384)
T d2omza2         243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYF  316 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCS
T ss_pred             cchhccccCccCCCCc--ccccccCCEeeccCcccCC-CCc-ccccccccccccccccccc-c-cccchhcccCeEECCC
Confidence            4444555555443221  4444555555555555442 221 222 444555555555442 1 2244555555555555


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc-----ccccccccccccc------CCCCCCcEEEccC
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY------QRQKSLMLLEMES  573 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i------~~l~~L~~L~Ls~  573 (587)
                      |++++ ++. +..           +.+|+.|+|++|+++. ++     ++|+.|++++|+|      .++++|+.|+|++
T Consensus       317 n~l~~-l~~-l~~-----------l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         317 NNISD-ISP-VSS-----------LTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             SCCSC-CGG-GGG-----------CTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCC
T ss_pred             CCCCC-Ccc-ccc-----------CCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCC
Confidence            55553 221 222           4457777777887763 32     4688889999987      5678999999998


Q ss_pred             CC
Q 007860          574 QH  575 (587)
Q Consensus       574 N~  575 (587)
                      |.
T Consensus       383 Na  384 (384)
T d2omza2         383 QA  384 (384)
T ss_dssp             EE
T ss_pred             Cc
Confidence            83

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=9.7e-10  Score=104.12  Aligned_cols=145  Identities=20%  Similarity=0.259  Sum_probs=114.9

Q ss_pred             EEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcC
Q 007860          429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL  507 (587)
Q Consensus       429 L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  507 (587)
                      ++++.+.+++.+  .+..|.+|+.|++.+|.++ .++ .+.. ++|++|++++|++++..|  +..+++|+.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            456666666544  3567889999999999998 564 6777 999999999999995433  89999999999999999


Q ss_pred             cccCchhhhhcccCCceeecc------------ccccceEECCCCcccccc----cccccccccccccc------CCCCC
Q 007860          508 EGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGL----PQDLMSLSAKRNRY------QRQKS  565 (587)
Q Consensus       508 ~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~----p~~L~~L~l~~N~i------~~l~~  565 (587)
                      + .++ .+..+. .|+.++++            ...++.+.++.+.+....    ++.++.|++++|++      ..+++
T Consensus        98 ~-~i~-~l~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~  174 (227)
T d1h6ua2          98 K-NVS-AIAGLQ-SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK  174 (227)
T ss_dssp             S-CCG-GGTTCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred             c-ccc-cccccc-cccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhccccc
Confidence            7 565 455554 58888777            456778888888776422    25688899998876      67899


Q ss_pred             CcEEEccCCCCCCCCCC
Q 007860          566 LMLLEMESQHAKGLPTL  582 (587)
Q Consensus       566 L~~L~Ls~N~l~~~P~~  582 (587)
                      |+.|+|++|+++.+|..
T Consensus       175 L~~L~Ls~n~l~~l~~l  191 (227)
T d1h6ua2         175 LTTLKADDNKISDISPL  191 (227)
T ss_dssp             CCEEECCSSCCCCCGGG
T ss_pred             ceecccCCCccCCChhh
Confidence            99999999999998753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-09  Score=97.76  Aligned_cols=102  Identities=16%  Similarity=0.085  Sum_probs=67.2

Q ss_pred             EEcCCCCCcccCchhhcCCCCCCEEEccCC-CCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCc
Q 007860          429 IDLGSQGLKGYISDKISLLSNLVNLNLSTN-SLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL  506 (587)
Q Consensus       429 L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  506 (587)
                      ++.+++++. .+|..+..+++|+.|++++| .++..-+..+.. ++|+.|+|++|+|+..-|..|..+++|+.|+|++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            334444444 45666777778888888655 466333344666 788888888888875556667788888888888888


Q ss_pred             CcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860          507 LEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD  543 (587)
Q Consensus       507 l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~  543 (587)
                      |+ .+|...+...           .|+.|+|++|+|.
T Consensus        92 l~-~l~~~~~~~~-----------~l~~L~L~~Np~~  116 (156)
T d2ifga3          92 LE-SLSWKTVQGL-----------SLQELVLSGNPLH  116 (156)
T ss_dssp             CS-CCCSTTTCSC-----------CCCEEECCSSCCC
T ss_pred             Cc-ccChhhhccc-----------cccccccCCCccc
Confidence            87 5666555432           2556677777764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.9e-09  Score=95.97  Aligned_cols=99  Identities=23%  Similarity=0.263  Sum_probs=81.1

Q ss_pred             CccceeecCCC-------CCCceeEEEEEcCCC-CCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEecc
Q 007860          409 AWEGITCHPNK-------DETAVVISQIDLGSQ-GLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS  479 (587)
Q Consensus       409 ~~~gv~c~~~~-------~~~~~~l~~L~L~~n-~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls  479 (587)
                      .+.+++|....       ...+.+++.|++++| .++...+..|.++++|+.|+|++|+|+..-|..+.. ++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            36778887543       233457899999876 488777788999999999999999999655666777 999999999


Q ss_pred             CCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860          480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       480 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      +|+|+ .+|..+....+|+.|+|++|++.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99999 77776666668999999999995

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.76  E-value=1.7e-10  Score=107.38  Aligned_cols=106  Identities=19%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  502 (587)
                      ..|+.|+|++|+|+. ++ .+..|++|+.|+|++|.++ .+|..... ++|+.|++++|+++ .++ .+..+++|+.|++
T Consensus        48 ~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEE
T ss_pred             cccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccccccccccccc
Confidence            456677777777763 33 4667777777777777776 55543333 56777777777776 343 3566677777777


Q ss_pred             cCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860          503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF  544 (587)
Q Consensus       503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~  544 (587)
                      ++|+++ .++. +..+..        +++|+.|+|++|++..
T Consensus       123 ~~N~i~-~~~~-~~~l~~--------l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         123 SNNKIT-NWGE-IDKLAA--------LDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECC-CHHH-HHHHTT--------TTTCSEEEECSSHHHH
T ss_pred             ccchhc-cccc-cccccC--------CCccceeecCCCcccc
Confidence            777776 2331 111111        3456677777777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.9e-08  Score=92.67  Aligned_cols=153  Identities=16%  Similarity=0.162  Sum_probs=104.7

Q ss_pred             EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC-CCCC-CCccEEeccCCcCCccCCc-cccCCCCCCEEEcc
Q 007860          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN  503 (587)
Q Consensus       427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~-~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~Ls  503 (587)
                      +.++.++.+++ .+|+.+.  +++++|+|++|+++ .+|. .+.. ++|++|++++|.+...+|. .+..+++++.|.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            35788888888 6776553  58999999999998 5655 5677 9999999999999866554 57889999999886


Q ss_pred             C-CcCcccCchhhhhcccCCceeecc---------------ccccceEECCCCcccc-------cccccccccccccccc
Q 007860          504 N-NLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDF-------GLPQDLMSLSAKRNRY  560 (587)
Q Consensus       504 ~-N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~-------~~p~~L~~L~l~~N~i  560 (587)
                      . |++....+..+..+. +|+.++++               +..+..+..+++.+..       ..+..+..|++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCT-TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccc-cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            4 677644444444444 68888877               2334344444544432       1234566677788877


Q ss_pred             C-------CCCCCcEE-EccCCCCCCCCCCCC
Q 007860          561 Q-------RQKSLMLL-EMESQHAKGLPTLPL  584 (587)
Q Consensus       561 ~-------~l~~L~~L-~Ls~N~l~~~P~~~~  584 (587)
                      +       ...+++++ .+++|+|+.+|...+
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f  197 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVF  197 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCTTCCCCCTTTT
T ss_pred             cccccccccchhhhccccccccccccccHHHh
Confidence            3       23334444 578888998887543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.62  E-value=2e-09  Score=99.88  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=77.1

Q ss_pred             EEEEcCCC--CCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860          427 SQIDLGSQ--GLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (587)
Q Consensus       427 ~~L~L~~n--~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls  503 (587)
                      +.+++.++  .+. .++..+..|++|+.|+|++|+++ .++ .+.. ++|+.|+|++|+++ .+|.....+++|+.|+++
T Consensus        26 ~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          26 EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS  101 (198)
T ss_dssp             SCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECS
T ss_pred             ceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccc
Confidence            33555543  233 56788999999999999999998 665 5777 99999999999998 777666666789999999


Q ss_pred             CCcCcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860          504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD  543 (587)
Q Consensus       504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~  543 (587)
                      +|+++ .++ .+..+           .+|+.|+|++|+++
T Consensus       102 ~N~i~-~l~-~~~~l-----------~~L~~L~L~~N~i~  128 (198)
T d1m9la_         102 YNQIA-SLS-GIEKL-----------VNLRVLYMSNNKIT  128 (198)
T ss_dssp             EEECC-CHH-HHHHH-----------HHSSEEEESEEECC
T ss_pred             ccccc-ccc-ccccc-----------ccccccccccchhc
Confidence            99998 443 34443           34677777788876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-08  Score=100.34  Aligned_cols=151  Identities=21%  Similarity=0.184  Sum_probs=107.0

Q ss_pred             eeEEEEEcCCCCCccc-CchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCC-cCCcc-CCccccCCCCCCE
Q 007860          424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSSKLQL  499 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N-~l~g~-iP~~l~~l~~L~~  499 (587)
                      ..+++|+|+++.+... +...+..+++|++|+|+++.+++..+..++. ++|++|+++++ .++.. +..-...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3588899999887644 4556788899999999999988777777877 89999999984 56521 2222356789999


Q ss_pred             EEccCC-cCcc-cCchhhhhcccCCceeecc-----------------ccccceEECCCCc-cccccc------cccccc
Q 007860          500 VLLNNN-LLEG-RVPEELYSIGVHGGAFDLS-----------------VVYICCIRRGRND-YDFGLP------QDLMSL  553 (587)
Q Consensus       500 L~Ls~N-~l~g-~ip~~l~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~-l~~~~p------~~L~~L  553 (587)
                      |+++++ .++. .+...+.....+|+.|+++                 +++|++|+|++|. ++...+      +.|+.|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            999985 4432 2233444444567877775                 5679999998864 543222      457778


Q ss_pred             ccccc-cc--------CCCCCCcEEEccCC
Q 007860          554 SAKRN-RY--------QRQKSLMLLEMESQ  574 (587)
Q Consensus       554 ~l~~N-~i--------~~l~~L~~L~Ls~N  574 (587)
                      +++++ .|        ..+++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            88874 33        56788888888775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.53  E-value=4.2e-07  Score=90.30  Aligned_cols=135  Identities=29%  Similarity=0.379  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  504 (587)
                      +++.|+|++++++ .+|+.   +++|++|+|++|+|+ .+|..+  .+|+.|++++|+++ .+++.   .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~--~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP--QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC--TTCCEEECCSSCCS-CCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch--hhhhhhhhhhcccc-hhhhh---ccccccccccc
Confidence            3678999999998 57753   578999999999999 888654  68999999999998 56542   24699999999


Q ss_pred             CcCcccCchhhhhcccCCceeeccccccceEECCCCccccc--cccccccccccccc------cCCCCCCcEEEccCCCC
Q 007860          505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG--LPQDLMSLSAKRNR------YQRQKSLMLLEMESQHA  576 (587)
Q Consensus       505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~--~p~~L~~L~l~~N~------i~~l~~L~~L~Ls~N~l  576 (587)
                      |.+. .+|. ++.+.           +|++|++++|.+...  .+..+..+.+.++.      +..+..++.|.+++|.+
T Consensus       108 n~l~-~lp~-~~~l~-----------~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         108 NQLE-KLPE-LQNSS-----------FLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SCCS-SCCC-CTTCT-----------TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cccc-cccc-hhhhc-----------cceeeccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            9998 6774 34332           355566666665521  12233444433332      35566677777777777


Q ss_pred             CCCCCCC
Q 007860          577 KGLPTLP  583 (587)
Q Consensus       577 ~~~P~~~  583 (587)
                      ...|...
T Consensus       175 ~~~~~~~  181 (353)
T d1jl5a_         175 KKLPDLP  181 (353)
T ss_dssp             SSCCCCC
T ss_pred             ccccccc
Confidence            7666544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=4e-08  Score=98.65  Aligned_cols=148  Identities=14%  Similarity=0.117  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCCcccCc----h---------hhcCCCCCCEEEccCCCCCCC----CCCCCCC-CCccEEeccCCcCCcc
Q 007860          425 VISQIDLGSQGLKGYIS----D---------KISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS  486 (587)
Q Consensus       425 ~l~~L~L~~n~l~g~~p----~---------~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~  486 (587)
                      .|+.|++++|.+...-.    .         .....+.|+.|++++|.+...    +...+.. +.|+.|+|++|+++..
T Consensus       122 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  201 (344)
T d2ca6a1         122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE  201 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             cchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccccc
Confidence            47788888887752111    1         123567788888888887632    1222333 7788999998888632


Q ss_pred             -----CCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc-----------cc-cc
Q 007860          487 -----IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG-----------LP-QD  549 (587)
Q Consensus       487 -----iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~-----------~p-~~  549 (587)
                           +...+..+++|+.|+|++|.++..-...+......       ..+|++|+|++|.+...           .+ ..
T Consensus       202 g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-------~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~  274 (344)
T d2ca6a1         202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  274 (344)
T ss_dssp             HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             ccccchhhhhcchhhhcccccccccccccccccccccccc-------cccchhhhhhcCccCchhhHHHHHHhhhccCCC
Confidence                 33446677888999999888863222223222111       45677888888887641           11 46


Q ss_pred             ccccccccccc-------------CCCCCCcEEEccCCCCCCC
Q 007860          550 LMSLSAKRNRY-------------QRQKSLMLLEMESQHAKGL  579 (587)
Q Consensus       550 L~~L~l~~N~i-------------~~l~~L~~L~Ls~N~l~~~  579 (587)
                      |+.|++++|+|             .+++.|+.|+|++|+++.-
T Consensus       275 L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            88899999987             3577899999999998753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.6e-07  Score=90.21  Aligned_cols=133  Identities=17%  Similarity=0.101  Sum_probs=96.4

Q ss_pred             cCCCCCCEEEccCCCCCCCCC-CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCC-cCcccCchhhhhcccC
Q 007860          445 SLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN-LLEGRVPEELYSIGVH  521 (587)
Q Consensus       445 ~~l~~L~~L~Ls~N~l~g~ip-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~~~~~  521 (587)
                      ....+|++|||+++.++.... .-+.. ++|++|+|+++.++...+..++.+++|++|+++++ .++..--..+.....+
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            455689999999999875433 33445 99999999999999888888999999999999995 5652111223333346


Q ss_pred             Cceeecc-----------------ccccceEECCCC--cccc----cc---ccccccccccccc-c--------CCCCCC
Q 007860          522 GGAFDLS-----------------VVYICCIRRGRN--DYDF----GL---PQDLMSLSAKRNR-Y--------QRQKSL  566 (587)
Q Consensus       522 L~~l~Ls-----------------l~~L~~L~L~~N--~l~~----~~---p~~L~~L~l~~N~-i--------~~l~~L  566 (587)
                      |+.|+++                 ..+|+.|++++.  .++.    .+   -++|+.|++++|. +        ..+++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            9999887                 357999999864  3332    11   1568899988753 3        567899


Q ss_pred             cEEEccCC-CCC
Q 007860          567 MLLEMESQ-HAK  577 (587)
Q Consensus       567 ~~L~Ls~N-~l~  577 (587)
                      ++|+|+++ .++
T Consensus       203 ~~L~L~~C~~i~  214 (284)
T d2astb2         203 QHLSLSRCYDII  214 (284)
T ss_dssp             CEEECTTCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            99999984 443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.20  E-value=4e-07  Score=91.15  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=97.2

Q ss_pred             eeEEEEEcCCCCCcc---c-------CchhhcCCCCCCEEEccCCCCCCCCC----CCCCC-CCccEEeccCCcCCccCC
Q 007860          424 VVISQIDLGSQGLKG---Y-------ISDKISLLSNLVNLNLSTNSLGGTLP----SGLGQ-QSLVRLDLSDNQFTGSIP  488 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g---~-------~p~~l~~l~~L~~L~Ls~N~l~g~ip----~~~~~-~~L~~L~Ls~N~l~g~iP  488 (587)
                      ..++.|+++++.+..   .       +...+...++|+.|+|++|.++..-.    ..+.. ++|++|++++|.+...-.
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~  138 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  138 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence            457788888765431   1       22345667889999999998875422    22333 789999999988752111


Q ss_pred             cc-------------ccCCCCCCEEEccCCcCcccCc----hhhhhcccCCceeecc-------------------cccc
Q 007860          489 DS-------------LTSSSKLQLVLLNNNLLEGRVP----EELYSIGVHGGAFDLS-------------------VVYI  532 (587)
Q Consensus       489 ~~-------------l~~l~~L~~L~Ls~N~l~g~ip----~~l~~~~~~L~~l~Ls-------------------l~~L  532 (587)
                      ..             ....+.|+.|++++|++...--    ..+... ..++.|+|+                   ..+|
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             ccccccccccccccccccCcccceeecccccccccccccccchhhhh-hhhcccccccccccccccccchhhhhcchhhh
Confidence            10             1245678888888887752211    122222 357777665                   4568


Q ss_pred             ceEECCCCccccc--------cc--cccccccccccccC--------------CCCCCcEEEccCCCCC
Q 007860          533 CCIRRGRNDYDFG--------LP--QDLMSLSAKRNRYQ--------------RQKSLMLLEMESQHAK  577 (587)
Q Consensus       533 ~~L~L~~N~l~~~--------~p--~~L~~L~l~~N~i~--------------~l~~L~~L~Ls~N~l~  577 (587)
                      ++|+|++|.+...        +.  +.|+.|++++|.|+              ....|++|+|++|+|+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            8888888887421        11  45778888888771              2457888888888875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-06  Score=89.24  Aligned_cols=83  Identities=30%  Similarity=0.445  Sum_probs=53.2

Q ss_pred             EEEEEcCCCCCcc----cCchhhcCCCCCCEEEccCCCCCC----CCCCCCCC--CCccEEeccCCcCCcc----CCccc
Q 007860          426 ISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ--QSLVRLDLSDNQFTGS----IPDSL  491 (587)
Q Consensus       426 l~~L~L~~n~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g----~ip~~~~~--~~L~~L~Ls~N~l~g~----iP~~l  491 (587)
                      ++.|+|++|+++.    .+...+..+++|+.|||++|.++.    .+...+..  .+|++|+|++|+++..    ++..+
T Consensus        29 l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l  108 (460)
T d1z7xw1          29 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL  108 (460)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred             CCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchh
Confidence            4457777777652    344556677778888887777742    12223333  4677888887777632    44556


Q ss_pred             cCCCCCCEEEccCCcCc
Q 007860          492 TSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       492 ~~l~~L~~L~Ls~N~l~  508 (587)
                      ..+++|++|++++|.+.
T Consensus       109 ~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         109 RTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TSCTTCCEEECCSSBCH
T ss_pred             hccccccccccccccch
Confidence            67777788888777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.8e-06  Score=84.69  Aligned_cols=113  Identities=21%  Similarity=0.224  Sum_probs=77.1

Q ss_pred             eeEEEEEcCCCCCccc-CchhhcCCCCCCEEEccCCCCCC----CCCCCCCC-CCccEEeccCCcCCc----cCCccccC
Q 007860          424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFTG----SIPDSLTS  493 (587)
Q Consensus       424 ~~l~~L~L~~n~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g----~ip~~~~~-~~L~~L~Ls~N~l~g----~iP~~l~~  493 (587)
                      ..|+.||+++|++++. +.+-+..+++++.|+|++|.++.    .+...+.. ++|++|||++|+++.    .+.+.+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3689999999999853 24446778999999999999872    23344556 899999999999862    12333332


Q ss_pred             -CCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860          494 -SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD  543 (587)
Q Consensus       494 -l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~  543 (587)
                       ..+|++|+|++|+++..--..+......       .++|++|+|++|++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~-------~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRT-------LPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTS-------CTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhc-------cccccccccccccch
Confidence             3579999999999974322223322111       345667777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=9.4e-06  Score=71.79  Aligned_cols=72  Identities=28%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             cCchhhcCCCCCCEEEccCCCCCCCCC---CCCCC-CCccEEeccCCcCCccCCc-cccCCCCCCEEEccCCcCcccCc
Q 007860          439 YISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLNNNLLEGRVP  512 (587)
Q Consensus       439 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip---~~~~~-~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~Ls~N~l~g~ip  512 (587)
                      .++.....+++|++|+|++|+|+. ++   ..+.. ++|+.|+|++|+++ .+++ ......+|+.|++++|++.....
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~-l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCC-CSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccC-CchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcc
Confidence            444455678999999999999984 43   23334 89999999999998 4554 23344578999999999985443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=2.8e-05  Score=68.59  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             CCccEEeccCCcCCcc--CCccccCCCCCCEEEccCCcCc
Q 007860          471 QSLVRLDLSDNQFTGS--IPDSLTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       471 ~~L~~L~Ls~N~l~g~--iP~~l~~l~~L~~L~Ls~N~l~  508 (587)
                      +.|++|+|++|+++..  ++..+..+++|+.|+|++|.++
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            5666666666666621  1233445666666666666666

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=97.27  E-value=0.0033  Score=53.55  Aligned_cols=80  Identities=20%  Similarity=0.287  Sum_probs=61.6

Q ss_pred             CcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEeeCC
Q 007860           89 KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFA  168 (587)
Q Consensus        89 ~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~~~  168 (587)
                      ...|.+++ +.|.|.|+++|--        ....+|.+.+...+..+.       ....-+.|.+.+.++.|.|.|....
T Consensus        64 ~~~f~v~v-PnG~Y~Vtv~~Gd--------~~~~~~~~eg~~~~~~~~-------g~~~~~~~~V~VtDG~L~l~ft~~~  127 (146)
T d2o14a1          64 NNTFNVDL-PNGLYEVKVTLGN--------TARASVAAEGVFQVINMT-------GDGAEDTFQIPVTDGQLNLLVTEGK  127 (146)
T ss_dssp             SCCEEEEC-CSEEEEEEEEESS--------CSEEEEEETTEEEEEEEE-------STTCEEEEEEEECSSEEEEEEEESS
T ss_pred             CceEEEEC-CCCeEEEEEEEec--------CCCccEEEeeEEeccccC-------CccEEEEEEEEEECCeEEEEEecCC
Confidence            35899999 8999999999863        224578888877666542       2334567888999999999998665


Q ss_pred             C-CCceeeeEEeEecCC
Q 007860          169 T-DPPVIASLEVQQIDP  184 (587)
Q Consensus       169 ~-~~pfIn~iEi~~l~~  184 (587)
                      . ..|-||+|||.+.++
T Consensus       128 ~G~~~~in~l~I~~~~d  144 (146)
T d2o14a1         128 AGTAFTLSALKIKKLSD  144 (146)
T ss_dssp             TTSCCEEEEEEEEEEES
T ss_pred             CCCccEEEEEEEEeccc
Confidence            4 579999999998765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.52  E-value=0.0003  Score=62.02  Aligned_cols=84  Identities=12%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             eEEEEEcCCC-CCccc----CchhhcCCCCCCEEEccCCCCCCCCCCCC----CC-CCccEEeccCCcCCcc----CCcc
Q 007860          425 VISQIDLGSQ-GLKGY----ISDKISLLSNLVNLNLSTNSLGGTLPSGL----GQ-QSLVRLDLSDNQFTGS----IPDS  490 (587)
Q Consensus       425 ~l~~L~L~~n-~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~----~~-~~L~~L~Ls~N~l~g~----iP~~  490 (587)
                      .|+.|+|+++ .++..    +-..+...+.|+.|+|++|.+...-...+    .. +.|++|+|++|.++..    +-..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            4788999874 46432    34456777889999999998874322333    33 7799999999988742    2234


Q ss_pred             ccCCCCCCEEEccCCcCc
Q 007860          491 LTSSSKLQLVLLNNNLLE  508 (587)
Q Consensus       491 l~~l~~L~~L~Ls~N~l~  508 (587)
                      +...++|++|+|++|.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTTCCCSEEECCCCSSC
T ss_pred             HHhCCcCCEEECCCCcCC
Confidence            666788999999888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.91  E-value=0.0011  Score=58.19  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             cCCCCCCEEEccCC-CCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCccccCCCCCCEEEccCCcCcccCchh
Q 007860          445 SLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEGRVPEE  514 (587)
Q Consensus       445 ~~l~~L~~L~Ls~N-~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~g~ip~~  514 (587)
                      .+.++|+.|+|+++ .++..    +-..+.. +.|+.|+|++|.+...    +.+.+...+.|+.|+|++|.+...--..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999974 46522    2224555 8899999999998732    2234456688999999999997432333


Q ss_pred             hhhcccCCceeeccccccceEECCCCccccccccc-cccccccccccCCCCCCcEEEccCCC
Q 007860          515 LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQD-LMSLSAKRNRYQRQKSLMLLEMESQH  575 (587)
Q Consensus       515 l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~-L~~L~l~~N~i~~l~~L~~L~Ls~N~  575 (587)
                      +++....       ...|++|+|++|.+. .+... ...|   -..+...+.|+.|+++.+.
T Consensus        92 l~~aL~~-------n~sL~~L~l~~n~~~-~~g~~~~~~l---~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLV-------TQSIVEFKADNQRQS-VLGNQVEMDM---MMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTT-------TCCCSEEECCCCSSC-CCCHHHHHHH---HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHh-------CCcCCEEECCCCcCC-CccHHHHHHH---HHHHHhCCCccEeeCcCCC
Confidence            4433221       456888888888654 11110 0001   0112344577788877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.54  E-value=0.0019  Score=56.45  Aligned_cols=84  Identities=13%  Similarity=0.216  Sum_probs=53.1

Q ss_pred             eEEEEEcCC-CCCcc----cCchhhcCCCCCCEEEccCCCCCCCCCC----CCCC-CCccEEeccCCcCCcc----CCcc
Q 007860          425 VISQIDLGS-QGLKG----YISDKISLLSNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (587)
Q Consensus       425 ~l~~L~L~~-n~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~----~~~~-~~L~~L~Ls~N~l~g~----iP~~  490 (587)
                      .|+.|+|++ +.++.    .+-..+...++|+.|+|++|.++...-.    .+.. +.++.|++++|.+...    +-..
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            467788887 44642    2334566778888888888888643222    2233 7788888888887532    2244


Q ss_pred             ccCCCCCCEEEc--cCCcCc
Q 007860          491 LTSSSKLQLVLL--NNNLLE  508 (587)
Q Consensus       491 l~~l~~L~~L~L--s~N~l~  508 (587)
                      +...++|+.++|  ++|++.
T Consensus        98 l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCC
T ss_pred             HHhCccccEEeeccCCCcCc
Confidence            566677876555  456664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.64  E-value=0.019  Score=49.68  Aligned_cols=123  Identities=10%  Similarity=0.126  Sum_probs=70.4

Q ss_pred             CchhhcCCCCCCEEEccC-CCCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCccccCCCCCCEEEccCCcCcc
Q 007860          440 ISDKISLLSNLVNLNLST-NSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEG  509 (587)
Q Consensus       440 ~p~~l~~l~~L~~L~Ls~-N~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~g  509 (587)
                      +.....+.++|++|+|++ +.++..    +-..+.. +.|++|+|++|.++..    +-+.+...++++.+++++|.+..
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            334456778999999997 456522    2223345 8899999999988643    22334567889999999998874


Q ss_pred             cCchhhhhcccCCceeeccccccceEEC--CCCccccccccccccccccccccCCCCCCcEEEccCCC
Q 007860          510 RVPEELYSIGVHGGAFDLSVVYICCIRR--GRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQH  575 (587)
Q Consensus       510 ~ip~~l~~~~~~L~~l~Lsl~~L~~L~L--~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~  575 (587)
                      .--..+......       ...|+.++|  +.|++....-..|.      ..+...+.|+.|+++.+.
T Consensus        89 ~g~~~l~~~l~~-------~~~L~~l~L~l~~n~i~~~~~~~La------~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          89 SGILALVEALQS-------NTSLIELRIDNQSQPLGNNVEMEIA------NMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHGGGG-------CSSCCEEECCCCSSCCCHHHHHHHH------HHHHHCSSCCEEECCCSS
T ss_pred             hhHHHHHHHHHh-------CccccEEeeccCCCcCcHHHHHHHH------HHHHhCCCcCEEeCcCCC
Confidence            322333332211       234444444  45555321111110      012345678888887654

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=83.03  E-value=0.92  Score=37.70  Aligned_cols=77  Identities=14%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCc-cccccceecccCCcceeeeeeeEeecCCccEEEEEcc
Q 007860          274 AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVP  352 (587)
Q Consensus       274 ~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~  352 (587)
                      ...|.++| |++.|-|.++|++..         ..++.+.+. .+...     .+.+..   ......+++++|++.+..
T Consensus        64 ~~~f~v~v-PnG~Y~Vtv~~Gd~~---------~~~~~~eg~~~~~~~-----~g~~~~---~~~~V~VtDG~L~l~ft~  125 (146)
T d2o14a1          64 NNTFNVDL-PNGLYEVKVTLGNTA---------RASVAAEGVFQVINM-----TGDGAE---DTFQIPVTDGQLNLLVTE  125 (146)
T ss_dssp             SCCEEEEC-CSEEEEEEEEESSCS---------EEEEEETTEEEEEEE-----ESTTCE---EEEEEEECSSEEEEEEEE
T ss_pred             CceEEEEC-CCCeEEEEEEEecCC---------CccEEEeeEEecccc-----CCccEE---EEEEEEEECCeEEEEEec
Confidence            35788888 579999999999822         236777775 33221     233322   122345789999998865


Q ss_pred             cc-h-hhhhhcccccccc
Q 007860          353 VV-G-AALISGLENYALV  368 (587)
Q Consensus       353 ~~-~-s~~Ln~lei~~~~  368 (587)
                      .. + .|.||+|||-++.
T Consensus       126 ~~~G~~~~in~l~I~~~~  143 (146)
T d2o14a1         126 GKAGTAFTLSALKIKKLS  143 (146)
T ss_dssp             SSTTSCCEEEEEEEEEEE
T ss_pred             CCCCCccEEEEEEEEecc
Confidence            54 3 3889999997764