Citrus Sinensis ID: 007872

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISYVD
ccEEEEEHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccEEEEEEcccccHHHccHHHHHHHHHHHccccccccEEEEccccccccEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHcccccccEEEEEEEccccccccEEEEEccccccEEEEccccccccHHHHHHHccccccccccEEEEcccccccEEEcccccEEEcccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccEEEEccccccEEEEEEHHHHHHHccccccHHHHHHHHHHccccEEEEcccccccEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccHHcccccccHHHHHHHcccccccccEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcEEEEccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccEEEEEEccEEEEEEEEEcHHHHHHccccccEEEEEc
ccccEccHHHHHHHHHHHcccHHHHHHHHHcccEccccccccccccccccccHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHccccccccEccccccccccEEEEccccHHcccHHHHHHHEcccccHHHcccHHHHHHHHHHcccccccEEEEccccHHHcccccEEcccccccccEEEccccccccHHHHHHHccccHHHccccEEEccccccEEEEEcccEEEEcccEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccEEEcccccccEEEEEHHHHHHHccccccHHHHHHHHHHcccEEEEccccccccEEEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccEEEccccHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccEEEEEcccEEEEEEEEcHHHHHHccccccEEEEEc
MPTVSVGRDRLFAALGKSYTKEEFEDLCFCfgielddvTTEKAIIRKEkhldeegdendeEVIYKIEVPANRYDLLCLEGIAQALRVFNkqqeipkytlsdvskdsmlqmhvkpetssirpyVVCAVLRDisfdeasynsFIDLQDKLHQNICRRRTLVaigthdldtlqgpftyealppshinfvplkqtrdFTADELMEFYKSDLKLKKYLHIiensplypvlydqnrtvlslppiingahsaiTLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCkrkyqvepvEVVYadgrsyvypdlsaynMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAErsasgnnqwninvlvpptrsdvlhpcdvmEDVAIaygynnipkrkpasvkplalneFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLnrqtdestavvgnprtsdFEVVRTTLMpgilktighnkdhpkpikiyevgdvvlldekkdvGASCRRRLAALYCGANSGFELIHCLVDRIMEvigtpfvpvgddtgyyiqrsdepeflpgrqasithkgkhvgtfgivhpeVMSSFEQSLKNISYVD
mptvsvgrdrLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRkekhldeegdendeeVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYtlsdvskdsMLQMHVkpetssirpyVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAersasgnnqwnINVLVPPTRSDVLHPCDVMEDVAIAYGYnnipkrkpasvkPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLnrqtdestavvgnprtsdfeVVRTTLMPGILktighnkdhpkpikIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEvmssfeqslknisyvd
MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISYVD
*********RLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRK*************EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLS****************SSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHA*****GNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML*********VVG**RTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRS****FL*****SITHKGKHVGTFGIVHPEV***************
MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRK*************DLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISYVD
MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISYVD
*PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISYVD
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISYVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query586 2.2.26 [Sep-21-2011]
Q9SGE9598 Probable phenylalanine--t yes no 0.981 0.961 0.742 0.0
Q9VCA5589 Probable phenylalanine--t yes no 0.970 0.966 0.522 0.0
Q9NSD9589 Phenylalanine--tRNA ligas yes no 0.974 0.969 0.510 1e-171
Q5R7F7589 Phenylalanine--tRNA ligas yes no 0.974 0.969 0.505 1e-169
Q9WUA2589 Phenylalanine--tRNA ligas yes no 0.974 0.969 0.506 1e-167
Q19713591 Phenylalanine--tRNA ligas yes no 0.976 0.967 0.504 1e-165
Q550D2617 Phenylalanine--tRNA ligas yes no 0.974 0.925 0.471 1e-155
O13432592 Phenylalanine--tRNA ligas N/A no 0.955 0.945 0.469 1e-150
O42849589 Phenylalanine--tRNA ligas yes no 0.952 0.947 0.463 1e-149
P15624595 Phenylalanine--tRNA ligas yes no 0.950 0.936 0.444 1e-144
>sp|Q9SGE9|SYFB_ARATH Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1 Back     alignment and function desciption
 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/583 (74%), Positives = 509/583 (87%), Gaps = 8/583 (1%)

Query: 1   MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
           MPT+SVGRDRLFAALG+SYT+E+FE+LCF FGIELDDVTTEKAIIRKEKH+DEE D++ E
Sbjct: 1   MPTISVGRDRLFAALGESYTQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADDD-E 59

Query: 61  EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
           E+IYKIE+PANR DLLCLEG+AQ+LRVF ++QEIP YTL+D+SKD +LQM+VKPETS IR
Sbjct: 60  EIIYKIEIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIR 119

Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
           P+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRR+LVAIGTHDLDTLQGPFTYEALPP
Sbjct: 120 PFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPP 179

Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
           + INFVPLKQT+ F ADEL+EFYKSD+KLKK+LHIIENSP++PVLYD  RTVLSLPPIIN
Sbjct: 180 TDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIIN 239

Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
           GAHSAITL+TKNVFIECTATDLTKAKIVLNTMVT FSE+C RK+++EPVEV Y DG+SY+
Sbjct: 240 GAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTYDDGKSYI 299

Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
           YPDL+ Y+MEV LS+I  +IGVSL+ E+VTSLL RMQL AE++ S +NQ  I V VPP+R
Sbjct: 300 YPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSR 359

Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
           SDVLHPCDVMEDVAIAYG+NNIP RKPAS+KPL LNE +DL+R+EIAM  +TEV+TW+LC
Sbjct: 360 SDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTEVVTWLLC 419

Query: 421 SSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGD 480
           S KE   MLNR+   S  +VGNPR++DFE +R  LMPG+LKT+GHN  +PKPIKI+E+ D
Sbjct: 420 SHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVGHNNKYPKPIKIFEISD 479

Query: 481 VVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPF-------VPVGDD 533
           VV+LDE KDVGAS RR LAALYCGA SGFELIH LVDRIMEV+  PF       VP+ + 
Sbjct: 480 VVMLDESKDVGASNRRHLAALYCGATSGFELIHGLVDRIMEVMAIPFLTIHENNVPINEK 539

Query: 534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
            GYY++ S EPEFLPGRQASI  +GKH+G FGIVHPEV+++F+
Sbjct: 540 DGYYVKLSQEPEFLPGRQASIIVRGKHIGNFGIVHPEVLNNFD 582

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0
>sp|Q9VCA5|SYFB_DROME Probable phenylalanine--tRNA ligase beta subunit OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1 Back     alignment and function description
>sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3 Back     alignment and function description
>sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB PE=2 SV=1 Back     alignment and function description
>sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb PE=2 SV=2 Back     alignment and function description
>sp|Q19713|SYFB_CAEEL Phenylalanine--tRNA ligase beta subunit OS=Caenorhabditis elegans GN=frs-2 PE=1 SV=2 Back     alignment and function description
>sp|Q550D2|SYFB_DICDI Phenylalanine--tRNA ligase beta subunit OS=Dictyostelium discoideum GN=phesB PE=3 SV=2 Back     alignment and function description
>sp|O13432|SYFB_CANAX Phenylalanine--tRNA ligase beta subunit OS=Candida albicans GN=FRS1 PE=2 SV=3 Back     alignment and function description
>sp|O42849|SYFB_SCHPO Phenylalanine--tRNA ligase beta subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=frs1 PE=3 SV=1 Back     alignment and function description
>sp|P15624|SYFB_YEAST Phenylalanine--tRNA ligase beta subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRS1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
255564405593 phenylalanyl-tRNA synthetase beta chain, 0.982 0.971 0.786 0.0
224122624595 predicted protein [Populus trichocarpa] 0.981 0.966 0.795 0.0
224123942598 predicted protein [Populus trichocarpa] 0.981 0.961 0.791 0.0
225455762592 PREDICTED: probable phenylalanyl-tRNA sy 0.984 0.974 0.787 0.0
449440866591 PREDICTED: probable phenylalanine--tRNA 0.979 0.971 0.786 0.0
297842003591 hypothetical protein ARALYDRAFT_476389 [ 0.981 0.972 0.769 0.0
357477759613 hypothetical protein MTR_4g112680 [Medic 0.979 0.936 0.756 0.0
357477763589 hypothetical protein MTR_4g112680 [Medic 0.972 0.967 0.758 0.0
356511581603 PREDICTED: probable phenylalanyl-tRNA sy 0.982 0.955 0.758 0.0
356562670603 PREDICTED: probable phenylalanyl-tRNA sy 0.982 0.955 0.759 0.0
>gi|255564405|ref|XP_002523199.1| phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis] gi|223537606|gb|EEF39230.1| phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/577 (78%), Positives = 519/577 (89%), Gaps = 1/577 (0%)

Query: 1   MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
           MPTV+V RDRLFAALG++YT+EEF+DLCF FGIELDDVTT++ I RKE+H +E     DE
Sbjct: 1   MPTVNVSRDRLFAALGRTYTEEEFDDLCFRFGIELDDVTTDEGINRKERHEEEGKGNEDE 60

Query: 61  EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
           E+IYKIEVPANRYDLLCLEGIAQALR+FNKQ+E PKYTL+++SK +ML+MHVKPETSSIR
Sbjct: 61  EIIYKIEVPANRYDLLCLEGIAQALRIFNKQEETPKYTLANISKQAMLKMHVKPETSSIR 120

Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
           PYVVCAVLRD++FDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLD LQGPFTYEALPP
Sbjct: 121 PYVVCAVLRDMTFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDMLQGPFTYEALPP 180

Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
             INFVPLKQ +++ AD+LMEFY++DLKLKK+LHIIENSP++P+LYD  RTVLSLPPIIN
Sbjct: 181 QDINFVPLKQVKNYRADQLMEFYRNDLKLKKFLHIIENSPVFPILYDSRRTVLSLPPIIN 240

Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
           GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFS YCK+K++VEPVEV+Y DG+S V
Sbjct: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSAYCKKKFEVEPVEVIYPDGKSNV 300

Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
           YPDLS YNMEV LSYI  +IGVSL+ EE+TSLLNRMQLHAE+S S  +Q  INV +PPTR
Sbjct: 301 YPDLSVYNMEVPLSYITGSIGVSLKTEEITSLLNRMQLHAEQSVSNADQCTINVSIPPTR 360

Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
           SDVLHPCDVMEDVAIAYGYNNIPKRK  S+KPLALN+  DL+R+E+AMNGFTEVLTWILC
Sbjct: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKLPSLKPLALNQLEDLIRVEVAMNGFTEVLTWILC 420

Query: 421 SSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVG 479
           S +E   MLNR+ D STAV VGNPR+SDFEVVRT+LMPG LK +GHNKDHPKPIKI+EVG
Sbjct: 421 SYRENFGMLNRKDDGSTAVIVGNPRSSDFEVVRTSLMPGALKIVGHNKDHPKPIKIFEVG 480

Query: 480 DVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQ 539
           D+  LD+ KDVGA+ RR LAALYCG NSGFELIH LVDR+MEV+GTPFVP+G++TGYYIQ
Sbjct: 481 DIAKLDDSKDVGAANRRLLAALYCGTNSGFELIHSLVDRVMEVMGTPFVPIGNNTGYYIQ 540

Query: 540 RSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
             D PEFLPGRQASI +KGKH+G FGIVHPEV+++F+
Sbjct: 541 CCDAPEFLPGRQASIIYKGKHIGIFGIVHPEVLNNFD 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122624|ref|XP_002330528.1| predicted protein [Populus trichocarpa] gi|222872462|gb|EEF09593.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123942|ref|XP_002319202.1| predicted protein [Populus trichocarpa] gi|222857578|gb|EEE95125.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225455762|ref|XP_002269751.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain [Vitis vinifera] gi|297734128|emb|CBI15375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440866|ref|XP_004138205.1| PREDICTED: probable phenylalanine--tRNA ligase beta subunit-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842003|ref|XP_002888883.1| hypothetical protein ARALYDRAFT_476389 [Arabidopsis lyrata subsp. lyrata] gi|297334724|gb|EFH65142.1| hypothetical protein ARALYDRAFT_476389 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357477759|ref|XP_003609165.1| hypothetical protein MTR_4g112680 [Medicago truncatula] gi|355510220|gb|AES91362.1| hypothetical protein MTR_4g112680 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357477763|ref|XP_003609167.1| hypothetical protein MTR_4g112680 [Medicago truncatula] gi|355510222|gb|AES91364.1| hypothetical protein MTR_4g112680 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356511581|ref|XP_003524503.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] Back     alignment and taxonomy information
>gi|356562670|ref|XP_003549592.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
TAIR|locus:2030290598 AT1G72550 [Arabidopsis thalian 0.981 0.961 0.744 1.5e-239
FB|FBgn0039175589 CG5706 [Drosophila melanogaste 0.969 0.964 0.526 2.7e-164
ZFIN|ZDB-GENE-021206-2590 farsb "phenylalanyl-tRNA synth 0.974 0.967 0.531 3.9e-163
UNIPROTKB|Q5ZJ61589 FARSB "Uncharacterized protein 0.974 0.969 0.511 7.7e-158
UNIPROTKB|F6XQ20589 FARSB "Uncharacterized protein 0.972 0.967 0.511 5.5e-157
UNIPROTKB|Q9NSD9589 FARSB "Phenylalanine--tRNA lig 0.972 0.967 0.514 2.4e-156
UNIPROTKB|A8E4P2589 FARSB "Uncharacterized protein 0.974 0.969 0.508 2.7e-155
RGD|1303210589 Farsb "phenylalanyl-tRNA synth 0.972 0.967 0.509 4.5e-153
MGI|MGI:1346035589 Farsb "phenylalanyl-tRNA synth 0.972 0.967 0.509 2.5e-152
WB|WBGene00001498591 fars-3 [Caenorhabditis elegans 0.974 0.966 0.508 6e-151
TAIR|locus:2030290 AT1G72550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2309 (817.9 bits), Expect = 1.5e-239, P = 1.5e-239
 Identities = 434/583 (74%), Positives = 509/583 (87%)

Query:     1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
             MPT+SVGRDRLFAALG+SYT+E+FE+LCF FGIELDDVTTEKAIIRKEKH+DEE D+ DE
Sbjct:     1 MPTISVGRDRLFAALGESYTQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADD-DE 59

Query:    61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
             E+IYKIE+PANR DLLCLEG+AQ+LRVF ++QEIP YTL+D+SKD +LQM+VKPETS IR
Sbjct:    60 EIIYKIEIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIR 119

Query:   121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
             P+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRR+LVAIGTHDLDTLQGPFTYEALPP
Sbjct:   120 PFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPP 179

Query:   181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
             + INFVPLKQT+ F ADEL+EFYKSD+KLKK+LHIIENSP++PVLYD  RTVLSLPPIIN
Sbjct:   180 TDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIIN 239

Query:   241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
             GAHSAITL+TKNVFIECTATDLTKAKIVLNTMVT FSE+C RK+++EPVEV Y DG+SY+
Sbjct:   240 GAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTYDDGKSYI 299

Query:   301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
             YPDL+ Y+MEV LS+I  +IGVSL+ E+VTSLL RMQL AE++ S +NQ  I V VPP+R
Sbjct:   300 YPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSR 359

Query:   361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
             SDVLHPCDVMEDVAIAYG+NNIP RKPAS+KPL LNE +DL+R+EIAM  +TEV+TW+LC
Sbjct:   360 SDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTEVVTWLLC 419

Query:   421 SSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGD 480
             S KE   MLNR+   S  +VGNPR++DFE +R  LMPG+LKT+GHN  +PKPIKI+E+ D
Sbjct:   420 SHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVGHNNKYPKPIKIFEISD 479

Query:   481 VVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPF-------VPVGDD 533
             VV+LDE KDVGAS RR LAALYCGA SGFELIH LVDRIMEV+  PF       VP+ + 
Sbjct:   480 VVMLDESKDVGASNRRHLAALYCGATSGFELIHGLVDRIMEVMAIPFLTIHENNVPINEK 539

Query:   534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
              GYY++ S EPEFLPGRQASI  +GKH+G FGIVHPEV+++F+
Sbjct:   540 DGYYVKLSQEPEFLPGRQASIIVRGKHIGNFGIVHPEVLNNFD 582
GO:0000166 "nucleotide binding" evidence=IEA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0009328 "phenylalanine-tRNA ligase complex" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
FB|FBgn0039175 CG5706 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021206-2 farsb "phenylalanyl-tRNA synthetase, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ61 FARSB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F6XQ20 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NSD9 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A8E4P2 FARSB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1303210 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1346035 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00001498 fars-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B6YTJ3SYFB_THEON6, ., 1, ., 1, ., 2, 00.30570.90950.9318yesno
Q8U260SYFB_PYRFU6, ., 1, ., 1, ., 2, 00.31660.90780.9568yesno
B1L7C0SYFB_KORCO6, ., 1, ., 1, ., 2, 00.31950.88900.9370yesno
O73984SYFB_PYRHO6, ., 1, ., 1, ., 2, 00.30800.90610.9550yesno
Q468N7SYFB_METBF6, ., 1, ., 1, ., 2, 00.32410.85660.9227yesno
A7I615SYFB_METB66, ., 1, ., 1, ., 2, 00.31870.82590.8929yesno
A4FWS3SYFB_METM56, ., 1, ., 1, ., 2, 00.31150.80030.8465yesno
Q8PTA5SYFB_METMA6, ., 1, ., 1, ., 2, 00.30930.85660.9211yesno
O42849SYFB_SCHPO6, ., 1, ., 1, ., 2, 00.46360.95220.9473yesno
C6A237SYFB_THESM6, ., 1, ., 1, ., 2, 00.30800.90780.95yesno
P15624SYFB_YEAST6, ., 1, ., 1, ., 2, 00.44480.95050.9361yesno
A3CT77SYFB_METMJ6, ., 1, ., 1, ., 2, 00.31720.80710.8663yesno
O26864SYFB_METTH6, ., 1, ., 1, ., 2, 00.31300.84120.8979yesno
A0B993SYFB_METTP6, ., 1, ., 1, ., 2, 00.31710.81390.8849yesno
Q19713SYFB_CAEEL6, ., 1, ., 1, ., 2, 00.50420.97610.9678yesno
Q76KA7SYFB_PYRKO6, ., 1, ., 1, ., 2, 00.30080.90780.9268yesno
Q9VCA5SYFB_DROME6, ., 1, ., 1, ., 2, 00.52240.97090.9660yesno
Q6LXU2SYFB_METMP6, ., 1, ., 1, ., 2, 00.31590.80200.8483yesno
Q8SS40SYFB_ENCCU6, ., 1, ., 1, ., 2, 00.34710.90270.9497yesno
Q4J8Q0SYFB_SULAC6, ., 1, ., 1, ., 2, 00.30130.80880.8745yesno
Q9SGE9SYFB_ARATH6, ., 1, ., 1, ., 2, 00.74270.98120.9615yesno
Q9NSD9SYFB_HUMAN6, ., 1, ., 1, ., 2, 00.51020.97440.9694yesno
Q550D2SYFB_DICDI6, ., 1, ., 1, ., 2, 00.47170.97440.9254yesno
Q5R7F7SYFB_PONAB6, ., 1, ., 1, ., 2, 00.50510.97440.9694yesno
Q9UYX2SYFB_PYRAB6, ., 1, ., 1, ., 2, 00.31150.90610.9550yesno
C5A5Z0SYFB_THEGJ6, ., 1, ., 1, ., 2, 00.30280.90440.9330yesno
B8GEX4SYFB_METPE6, ., 1, ., 1, ., 2, 00.30930.81220.8717yesno
Q12YP2SYFB_METBU6, ., 1, ., 1, ., 2, 00.31200.81390.8833yesno
O28848SYFB_ARCFU6, ., 1, ., 1, ., 2, 00.32820.81740.8756yesno
Q8TPF7SYFB_METAC6, ., 1, ., 1, ., 2, 00.32220.85660.9211yesno
Q9WUA2SYFB_MOUSE6, ., 1, ., 1, ., 2, 00.50680.97440.9694yesno
Q2FLL1SYFB_METHJ6, ., 1, ., 1, ., 2, 00.30320.80030.8605yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.200.946
3rd Layer6.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
PLN02265597 PLN02265, PLN02265, probable phenylalanyl-tRNA syn 0.0
PRK09616552 PRK09616, pheT, phenylalanyl-tRNA synthetase subun 1e-154
TIGR00471551 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase 1e-149
COG0072 650 COG0072, PheT, Phenylalanyl-tRNA synthetase beta s 1e-93
PRK00629 791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 3e-39
cd00769198 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthe 4e-36
TIGR00472 797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 3e-33
smart00873174 smart00873, B3_4, B3/4 domain 3e-27
smart0087468 smart00874, B5, tRNA synthetase B5 domain 3e-18
pfam03483159 pfam03483, B3_4, B3/4 domain 1e-16
pfam0348470 pfam03484, B5, tRNA synthetase B5 domain 5e-16
CHL00192 704 CHL00192, syfB, phenylalanyl-tRNA synthetase beta 4e-09
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information 
 Score = 1134 bits (2936), Expect = 0.0
 Identities = 447/583 (76%), Positives = 510/583 (87%), Gaps = 9/583 (1%)

Query: 1   MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDEN-- 58
           MPTVSVGRDRLFAALG++YT+EEF++LCF FGIELDDVTTEKAIIRKEKHLDEE D    
Sbjct: 1   MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGAD 60

Query: 59  -DEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETS 117
            DEEVIYKI+VPANRYDLLCLEG+A+ALRVF   + IP Y L+++SK S+L+MHVKPETS
Sbjct: 61  DDEEVIYKIDVPANRYDLLCLEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETS 120

Query: 118 SIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA 177
            IRP+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA
Sbjct: 121 LIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA 180

Query: 178 LPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237
           LPP  INFVPLKQT+ F ADELMEFYKSD+KLKK+LHIIENSP++PV+YD NRTVLSLPP
Sbjct: 181 LPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240

Query: 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGR 297
           IINGAHSAITL TKNVFIECTATDLTKAKIVLNTMVT+FSEYC RK++VEPVEVVY DG+
Sbjct: 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGK 300

Query: 298 SYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVP 357
           S VYPDLS   MEV LSYIN +IGVSL+AEEV SLLN+MQL AE+  S ++   I V VP
Sbjct: 301 STVYPDLSVRTMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAEQ--SSDDGCTIRVSVP 358

Query: 358 PTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEV 414
           PTRSD+LHPCDV EDVAIAYGYNNIPKRKP S+   K   LN+FSDL+R E+AM GFTEV
Sbjct: 359 PTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEV 418

Query: 415 LTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473
           LTWILCS KE   MLNR+ D ++AV +GNPR++DFEVVRT+L+PG+LKT+GHNKD PKPI
Sbjct: 419 LTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPI 478

Query: 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDD 533
           K++EV DVVLLDE KDVGA   RRLAALYCG  SGFE+IH LVDRIMEV+G PFV +GD+
Sbjct: 479 KLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIGDN 538

Query: 534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
            GYY++ S+EPE+ PGRQASI +KGKHVGTFGIVHPEV+++F+
Sbjct: 539 NGYYVEPSNEPEYFPGRQASIIYKGKHVGTFGIVHPEVLNNFD 581

Length = 597
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|214876 smart00873, B3_4, B3/4 domain Back     alignment and domain information
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|202662 pfam03483, B3_4, B3/4 domain Back     alignment and domain information
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 586
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 100.0
KOG2472578 consensus Phenylalanyl-tRNA synthetase beta subuni 100.0
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 100.0
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
CHL00192 704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 100.0
PRK00629 791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
TIGR00472 798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 100.0
COG0072 650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 100.0
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 100.0
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 100.0
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.97
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 99.97
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 99.96
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 99.92
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.91
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.89
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 99.88
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.86
PF03483174 B3_4: B3/4 domain; InterPro: IPR005146 This entry 99.86
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 99.85
PF0348470 B5: tRNA synthetase B5 domain; InterPro: IPR005147 99.82
smart0087471 B5 tRNA synthetase B5 domain. This domain is found 99.79
smart00873174 B3_4 B3/4 domain. This domain is found in tRNA syn 99.6
PLN02788 402 phenylalanine-tRNA synthetase 99.6
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 99.59
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 99.59
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.56
COG0072650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 99.39
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 99.1
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 99.02
COG3382229 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe- 98.67
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 98.59
smart0087471 B5 tRNA synthetase B5 domain. This domain is found 98.48
PF0348470 B5: tRNA synthetase B5 domain; InterPro: IPR005147 97.83
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 97.74
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 97.65
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 97.61
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 97.4
PRK12421 392 ATP phosphoribosyltransferase regulatory subunit; 97.38
PF13393 311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 97.3
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 97.26
CHL00201 430 syh histidine-tRNA synthetase; Provisional 97.1
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 96.99
PLN02530 487 histidine-tRNA ligase 96.94
TIGR00443 314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 96.86
PRK12420 423 histidyl-tRNA synthetase; Provisional 96.81
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 96.69
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 96.67
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 96.51
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 96.41
PRK09194 565 prolyl-tRNA synthetase; Provisional 96.29
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 96.22
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 96.13
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 96.13
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 96.06
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 96.03
PLN02972 763 Histidyl-tRNA synthetase 96.03
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 95.86
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 95.79
PLN02908 686 threonyl-tRNA synthetase 95.78
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 95.67
PRK12444 639 threonyl-tRNA synthetase; Reviewed 95.43
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 95.4
PRK12325 439 prolyl-tRNA synthetase; Provisional 95.39
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 95.06
PRK00960517 seryl-tRNA synthetase; Provisional 95.01
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 94.93
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 94.37
PLN02678448 seryl-tRNA synthetase 94.36
PRK00629791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 94.33
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 94.25
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 93.71
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 93.53
PF00152 335 tRNA-synt_2: tRNA synthetases class II (D, K and N 93.09
TIGR00414418 serS seryl-tRNA synthetase. This model represents 93.01
TIGR00472798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 93.01
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 92.46
CHL00192704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 92.44
PRK09350 306 poxB regulator PoxA; Provisional 92.31
PRK06462 335 asparagine synthetase A; Reviewed 92.04
PLN02837 614 threonine-tRNA ligase 91.95
PRK05431425 seryl-tRNA synthetase; Provisional 91.93
PRK08661 477 prolyl-tRNA synthetase; Provisional 91.88
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 91.64
PTZ00417 585 lysine-tRNA ligase; Provisional 91.26
cd00775 329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 90.62
smart00873174 B3_4 B3/4 domain. This domain is found in tRNA syn 90.01
PRK03991 613 threonyl-tRNA synthetase; Validated 89.69
PRK00484 491 lysS lysyl-tRNA synthetase; Reviewed 89.52
TIGR00499 496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 89.46
TIGR00462 304 genX lysyl-tRNA synthetase-like protein GenX. Many 89.14
PRK12445 505 lysyl-tRNA synthetase; Reviewed 88.83
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 88.79
PTZ00385 659 lysyl-tRNA synthetase; Provisional 88.78
PF1173474 TilS_C: TilS substrate C-terminal domain; InterPro 88.63
PRK03932 450 asnC asparaginyl-tRNA synthetase; Validated 87.74
PLN02502 553 lysyl-tRNA synthetase 86.2
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 85.79
cd00776 322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 85.12
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 83.45
PLN02850 530 aspartate-tRNA ligase 83.11
PTZ00401 550 aspartyl-tRNA synthetase; Provisional 82.52
PRK04173 456 glycyl-tRNA synthetase; Provisional 81.46
PLN02320502 seryl-tRNA synthetase 81.36
TIGR00458 428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 81.25
KOG1936 518 consensus Histidyl-tRNA synthetase [Translation, r 81.03
PRK05159 437 aspC aspartyl-tRNA synthetase; Provisional 80.85
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information 
Probab=100.00  E-value=3.6e-136  Score=1141.68  Aligned_cols=581  Identities=77%  Similarity=1.228  Sum_probs=520.8

Q ss_pred             CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccc---cCCCCCCceEEEEecCCCcccccC
Q 007872            1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDE---EGDENDEEVIYKIEVPANRYDLLC   77 (586)
Q Consensus         1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~ieit~NR~Dlls   77 (586)
                      ||||+|++++|++++|+++|++||+++||+||+|+|++++|+++.++|+|.++   ++.++++|++++||+|||||||||
T Consensus         1 MP~i~~~~~~l~~~~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dlls   80 (597)
T PLN02265          1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLLC   80 (597)
T ss_pred             CCEEEEcHHHHHHHhCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHHhh
Confidence            99999999999999999999999999999999999999877777778777765   235668999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCCCCc
Q 007872           78 LEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRT  157 (586)
Q Consensus        78 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r~r~  157 (586)
                      ++||||+|++++|....|.|.+.........++.|+.++.+.||||+|+++|||++++++|+||+|||+|||++++|+|+
T Consensus        81 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~r~  160 (597)
T PLN02265         81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT  160 (597)
T ss_pred             HHHHHHHHHHHhCCCCCCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCcce
Confidence            99999999999996447767653221122345666556678999999999999999999999999999999999999988


Q ss_pred             EEEeeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecC
Q 007872          158 LVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP  237 (586)
Q Consensus       158 ~VdIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslag  237 (586)
                      +|||||||+|+|++||.|+++++++++|+||+++++|+++||+++++++++|++|+|||++++.||||+|++|.|+||||
T Consensus       161 ~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslag  240 (597)
T PLN02265        161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP  240 (597)
T ss_pred             EEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhcccCcccccccccccCCCCceEEEeCCCCEEEeCC
Confidence            99999999999999999999999878999999999999999999999999999999999999999999999986799999


Q ss_pred             cccCCcceeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHh
Q 007872          238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYIN  317 (586)
Q Consensus       238 Iigg~~s~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~  317 (586)
                      ||||++|+||++|||||||||++|++++..||++++++|+++|+++|+++++.+++.+|..+.+|.+.++.+.++.++|+
T Consensus       241 Iing~~S~It~~TknIfIE~a~~D~~~~~~al~~~~~ll~e~~~~~~~i~~v~v~~~~~~~~~~p~~~~~~i~~~~~~i~  320 (597)
T PLN02265        241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN  320 (597)
T ss_pred             eeCCCccEecCCCcEEEEEEeccCHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEccCCceEeccCCcCceEEeeHHHHH
Confidence            99999999999999999999999999999999999999999999888999988887656667789888899999999999


Q ss_pred             hhcCCcCCHHHHHHHHHhcCCeEEEcC-CCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCC
Q 007872          318 HTIGVSLEAEEVTSLLNRMQLHAERSA-SGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL  393 (586)
Q Consensus       318 ~~lG~~l~~~~i~~~L~~Lg~~~~~~~-~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~  393 (586)
                      ++||++|+.++|+++|++|||++...+ ++ +.  |.|+||+||+||+|++||||||||+|||||||+++|...   ..+
T Consensus       321 ~~lG~~l~~~ei~~iL~~l~~~~~~~~~~~-~~--~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~  397 (597)
T PLN02265        321 SSIGVSLDAEEVASLLNKMQLQAEQSSDDG-CT--IRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ  397 (597)
T ss_pred             HHhCCCCCHHHHHHHHHHCCCCeEecccCC-Cc--eEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCC
Confidence            999999999999999999999996522 11 35  999999999999999999999999999999999988643   678


Q ss_pred             hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872          394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP  472 (586)
Q Consensus       394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~  472 (586)
                      +.+++.+++|+.|+++||+|++||+|+|+++++.+|+...++..+| |+||+|+|+++||+||+||||+++++|+|++.|
T Consensus       398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p  477 (597)
T PLN02265        398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP  477 (597)
T ss_pred             HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence            8999999999999999999999999999988778776543222579 999999999999999999999999999999889


Q ss_pred             eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceE
Q 007872          473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQA  552 (586)
Q Consensus       473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A  552 (586)
                      +|+||||+||.++.+.++++++.+++|++++|..++|+++||+|+++|..+|++.........|++++..++.|||||||
T Consensus       478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i~~~~~~~~~~~~~~~~~~~~f~pgr~A  557 (597)
T PLN02265        478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIGDNNGYYVEPSNEPEYFPGRQA  557 (597)
T ss_pred             eeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCCcccccccCceEEEeecCCccccCCceE
Confidence            99999999998875444666899999999999999999999999999999998510000000277788888999999999


Q ss_pred             EEEECCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872          553 SITHKGKHVGTFGIVHPEVMSSFEQSLKNISY  584 (586)
Q Consensus       553 ~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~  584 (586)
                      +|+++|+.||+||+|||+|+++|+|++||+++
T Consensus       558 ~I~~~g~~iG~iGelhP~vl~~f~l~~pv~~~  589 (597)
T PLN02265        558 SIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFL  589 (597)
T ss_pred             EEEECCeEEEEEEEECHHHHHHCCCCCceEEE
Confidence            99999999999999999999999999998764

>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits Back     alignment and domain information
>smart00874 B5 tRNA synthetase B5 domain Back     alignment and domain information
>smart00873 B3_4 B3/4 domain Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only] Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00874 B5 tRNA synthetase B5 domain Back     alignment and domain information
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>smart00873 B3_4 B3/4 domain Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3l4g_B589 Crystal Structure Of Homo Sapiens Cytoplasmic Pheny 1e-172
2cxi_A348 Crystal Structure Of An N-Terminal Fragment Of The 2e-43
3pco_B 795 Crystal Structure Of E. Coli Phenylalanine-Trna Syn 2e-14
2rhq_B 795 Phers From Staphylococcus Haemolyticus- Rational Pr 2e-10
2rhs_B 800 Phers From Staphylococcus Haemolyticus- Rational Pr 7e-10
1pys_B 785 Phenylalanyl-Trna Synthetase From Thermus Thermophi 8e-06
2iy5_B 785 Phenylalanyl-Trna Synthetase From Thermus Thermophi 9e-06
3ica_A213 The Crystal Structure Of The Beta Subunit Of A Phen 1e-04
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 Back     alignment and structure 
Iteration: 1

 Score =  601 bits (1549), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/584 (51%), Positives = 405/584 (69%), Gaps = 13/584 (2%)
Query: 1   MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
           MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+   +    +D 
Sbjct: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
Query: 61  EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQ-MHVKPETSSI 119
            V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y    V  D  +Q + +  ET+ I
Sbjct: 61  -VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVY--KRVMPDGKIQKLIITEETAKI 117
Query: 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALP 179
           RP+ V AVLR+I F +  Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A  
Sbjct: 118 RPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKR 177
Query: 180 PSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239
           PS I F PL +T+++TA ELM  YK+D  LK YLHIIEN PLYPV+YD N  VLS+PPII
Sbjct: 178 PSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPII 237
Query: 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSY 299
           NG HS IT+ T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE  EVV+ +G+S+
Sbjct: 238 NGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSH 297
Query: 300 VYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT 359
            +P+L+     V    IN  +G+    E +  LL RM L +E    GN    I + +PPT
Sbjct: 298 TFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGN---QIEIEIPPT 354
Query: 360 RSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFSDLMRLEIAMNGFTEVLT 416
           R+D++H CD++ED AIAYGYNNI    P +        LN+ ++L+R ++A  GFTE LT
Sbjct: 355 RADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALT 414
Query: 417 WILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475
           + LCS ++I+  L      + AV + NP+T++F+V RTTL+PG+LKTI  N+  P P+K+
Sbjct: 415 FALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474
Query: 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTG 535
           +E+ D+V+ D   DVGA   R L A+Y   N GFE+IH L+DRIM+++  P  P  D  G
Sbjct: 475 FEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP--PGEDKGG 532
Query: 536 YYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSL 579
           Y I+ S+ P F PGR A I  +G+ VG  G++HP+V++ FE ++
Sbjct: 533 YVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTM 576
>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The Phenylalanyl-Trna Synthetase Beta-Subunit From Pyrococcus Horikoshii Length = 348 Back     alignment and structure
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 795 Back     alignment and structure
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 795 Back     alignment and structure
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 Back     alignment and structure
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 785 Back     alignment and structure
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Complexed With Trna And A Phenylalanyl-Adenylate Analog Length = 785 Back     alignment and structure
>pdb|3ICA|A Chain A, The Crystal Structure Of The Beta Subunit Of A Phenylalanyl-Trna Synthetase From Porphyromonas Gingivalis W83 Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 0.0
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 1e-120
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 3e-40
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 2e-39
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 2e-38
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 6e-21
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 2e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 Back     alignment and structure
 Score =  647 bits (1670), Expect = 0.0
 Identities = 294/580 (50%), Positives = 401/580 (69%), Gaps = 11/580 (1%)

Query: 1   MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
           MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+   +    +D 
Sbjct: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60

Query: 61  EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
            V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y    +    + ++ +  ET+ IR
Sbjct: 61  -VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRV-MPDGKIQKLIITEETAKIR 118

Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
           P+ V AVLR+I F +  Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A  P
Sbjct: 119 PFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRP 178

Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
           S I F PL +T+++TA ELM  YK+D  LK YLHIIEN PLYPV+YD N  VLS+PPIIN
Sbjct: 179 SDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238

Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
           G HS IT+ T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE  EVV+ +G+S+ 
Sbjct: 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHT 298

Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
           +P+L+     V    IN  +G+    E +  LL RM L +E    G     I + +PPTR
Sbjct: 299 FPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDG---NQIEIEIPPTR 355

Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTW 417
           +D++H CD++ED AIAYGYNNI    P +        LN+ ++L+R ++A  GFTE LT+
Sbjct: 356 ADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTF 415

Query: 418 ILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476
            LCS ++I+  L      + AV + NP+T++F+V RTTL+PG+LKTI  N+  P P+K++
Sbjct: 416 ALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475

Query: 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGY 536
           E+ D+V+ D   DVGA   R L A+Y   N GFE+IH L+DRIM+++  P  P  D  GY
Sbjct: 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP--PGEDKGGY 533

Query: 537 YIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
            I+ S+ P F PGR A I  +G+ VG  G++HP+V++ FE
Sbjct: 534 VIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFE 573
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Length = 213 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 100.0
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 100.0
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 100.0
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 100.0
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 100.0
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 100.0
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 100.0
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 100.0
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 100.0
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 99.96
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.96
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.96
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.96
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.96
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.95
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 99.95
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.95
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 99.94
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 99.91
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.9
3hj7_A142 TRNA(Ile)-lysidine synthase; helix-turn-helix, pse 97.73
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 97.52
1z7m_A 344 ATP phosphoribosyltransferase regulatory subunit; 97.51
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 97.26
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 97.24
3rac_A 373 Histidine-tRNA ligase; structural genomics, PSI-bi 97.22
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 97.18
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 97.06
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 96.99
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 96.96
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 96.89
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 96.49
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 96.37
2i4l_A 458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 96.28
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 96.26
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 96.12
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 96.1
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 95.84
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 95.81
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 95.81
1evl_A 401 Threonyl-tRNA synthetase; amino acid recognition, 95.69
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 95.68
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 95.49
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 95.31
3uh0_A 460 Threonyl-tRNA synthetase, mitochondrial; threonine 94.94
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 94.87
3err_A536 Fusion protein of microtubule binding domain from 94.65
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 94.5
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 94.49
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 94.4
3vbb_A 522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 94.37
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 94.13
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 94.1
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 94.02
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 93.95
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 93.93
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 93.22
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 93.16
1wyd_A 429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 92.87
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 92.6
1x54_A 434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 92.43
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 91.67
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 89.92
3a74_A 493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 88.52
1e1o_A 504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 88.17
3a5y_A 345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 87.72
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 87.48
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 87.18
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 87.15
3i7f_A 548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 86.94
1n9w_A 422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 86.84
3nem_A 438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 86.72
4ex5_A 529 Lysine--tRNA ligase; structural genomics, niaid, n 86.64
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 85.71
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 85.45
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 85.4
2xgt_A 435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 84.82
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 84.54
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 80.28
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-135  Score=1139.61  Aligned_cols=577  Identities=51%  Similarity=0.909  Sum_probs=528.1

Q ss_pred             CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007872            1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG   80 (586)
Q Consensus         1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G   80 (586)
                      ||||+|++++|++++|+++|++||+++||+||+|+|++++|++++.+++|.++. .+.++|++++|++|||||||||++|
T Consensus         1 Mp~i~v~~~~l~~~~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~-~~~~~d~i~ei~itpNR~D~ls~~G   79 (589)
T 3l4g_B            1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKA-AGASDVVLYKIDVPANRYDLLCLEG   79 (589)
T ss_dssp             CCEEEEEHHHHHHHHTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCC-CSSSSSEEEEEECCTTCSTTSSHHH
T ss_pred             CCEEEECHHHHHHHHCCCCCHHHHHHHHHhcCCccccccccchhhhhccccccc-ccCCCCeEEEEecCCChhHHhHHHH
Confidence            999999999999999999999999999999999999999998888888887665 5578999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCCCCcEEE
Q 007872           81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA  160 (586)
Q Consensus        81 iARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r~r~~Vd  160 (586)
                      ||||+++++|..+.|.+...... .....+.|++++++.||||+|++||||++++++++||+|||+|||++++|+|++||
T Consensus        80 iARela~~~~~~~~p~~~~~~~~-~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd  158 (589)
T 3l4g_B           80 LVRGLQVFKERIKAPVYKRVMPD-GKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA  158 (589)
T ss_dssp             HHHHHHHHTTSSCCCCCEEECCS-SCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred             HHHHHHHhcCCCCCCCccccCCC-CCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence            99999999886678888765322 12457888888899999999999999999988888999999999999999999999


Q ss_pred             eeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCccc
Q 007872          161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN  240 (586)
Q Consensus       161 Ign~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIig  240 (586)
                      |||||+|+|+|||+|++.++++++|+||+++++|+.+++++++.+|.+|++|+||+++++.||||+|++|.++|||||||
T Consensus       159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImg  238 (589)
T 3l4g_B          159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN  238 (589)
T ss_dssp             EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEE
T ss_pred             hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEECCCCEEEECCccC
Confidence            99999999999999999998889999999988999999999999999999999999999999999999986689999999


Q ss_pred             CCcceeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhc
Q 007872          241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTI  320 (586)
Q Consensus       241 g~~s~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~l  320 (586)
                      |++|+||++||||||||||+|++.+..|+++++++++++|+++++++++++++..|..+.+|.+.+++|.++.++|+++|
T Consensus       239 G~~S~Vt~~T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~~~e~~~v~~~~g~~~~~p~~~~~~i~l~~~~i~~ll  318 (589)
T 3l4g_B          239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKV  318 (589)
T ss_dssp             BSTTCCCTTCCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECCCCCEEEEEEHHHHHHHH
T ss_pred             CccceeeCCCCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCceEecccccceEEEecHHHHHHhh
Confidence            99999999999999999999999999999999999999999888899988886546677889888899999999999999


Q ss_pred             CCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCChHHH
Q 007872          321 GVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNE  397 (586)
Q Consensus       321 G~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~  397 (586)
                      |++++.++|.++|++|||+++...++ +.  |.|+||+||.||+|++||||||||+|||||||.++|...   ..++.++
T Consensus       319 G~~i~~~~i~~iL~~Lgf~~~~~~~~-~~--~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~  395 (589)
T 3l4g_B          319 GIRETPENLAKLLTRMYLKSEVIGDG-NQ--IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNK  395 (589)
T ss_dssp             TCCCCHHHHHHHHHHTTCEEEECSSS-SE--EEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCeEEEcCCC-ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHH
Confidence            99999999999999999999764322 35  999999999999999999999999999999999998644   7789999


Q ss_pred             HHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeEE
Q 007872          398 FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY  476 (586)
Q Consensus       398 ~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lF  476 (586)
                      +.+++|+.|+++||+|++||+|+++++++++++.+.+..++| |+||+|+|+++|||||+||||+++++|++++.|+|+|
T Consensus       396 ~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlF  475 (589)
T 3l4g_B          396 LTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF  475 (589)
T ss_dssp             HHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEE
T ss_pred             HHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            999999999999999999999999998777887654435679 9999999999999999999999999999987789999


Q ss_pred             EeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE
Q 007872          477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH  556 (586)
Q Consensus       477 EiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~  556 (586)
                      |+|+||+++...+++.++.++++++++|+..+|+++||+++++|+.+|++...  ....|++++..+++|||||||.|++
T Consensus       476 EiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~~~~--~~~~~~~~~~~~~~~hPGr~A~I~~  553 (589)
T 3l4g_B          476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGE--DKGGYVIKASEGPAFFPGRCAEIFA  553 (589)
T ss_dssp             EEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCCBST--TTTSEEEEECCCTTEEEEEEEEEEE
T ss_pred             EeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCCccc--cccceEEeccCCCCccCCCEEEEEE
Confidence            99999998765556778889999999999999999999999999999986310  0012788898999999999999999


Q ss_pred             CCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872          557 KGKHVGTFGIVHPEVMSSFEQSLKNISY  584 (586)
Q Consensus       557 ~g~~iG~~GelhP~vl~~~~l~~pv~~~  584 (586)
                      +|+.||+||+|||+|+++|||+.||+.+
T Consensus       554 ~g~~iG~~GelHP~v~~~~~l~~~v~~~  581 (589)
T 3l4g_B          554 RGQSVGKLGVLHPDVITKFELTMPCSSL  581 (589)
T ss_dssp             TTEEEEEEEEECHHHHHHTTCCSCEEEE
T ss_pred             CCeEEEEEEEECHHHHHHcCCCCCeEEE
Confidence            9999999999999999999999998764
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 586
d1jjcb5207 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheR 4e-16
d1jjcb275 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-bet 8e-13
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Length = 207 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain
species: Thermus thermophilus [TaxId: 274]

 Score = 75.3 bits (184), Expect = 4e-16
 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 18/201 (8%)

Query: 382 IPKRKPASVKP--LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV 439
           +P   PA       A       +R  ++  GF EV T+     ++       + D    +
Sbjct: 2   LPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF---RLDPPRLL 58

Query: 440 VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP--IKIYEVGDVVLLDEKKDVGASCRRR 497
           + NP   +   +RT L PG+++ +  N D  +P    ++EVG V    E+  +       
Sbjct: 59  LLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGE 118

Query: 498 LAAL--YCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555
              L       SG+ L+   ++ +   +G           + ++    P   PG    + 
Sbjct: 119 GVGLPWAKERLSGYFLLKGYLEALFARLGLA---------FRVEAQAFPFLHPGVSGRVL 169

Query: 556 HKGKHVGTFGIVHPEVMSSFE 576
            +G+ VG  G +HPE+    E
Sbjct: 170 VEGEEVGFLGALHPEIAQELE 190
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 100.0
d1jjcb6209 B3/B4 domain of PheRS, PheT {Thermus thermophilus 99.95
d1jjcb275 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 99.89
d1jjcb177 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 99.65
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 99.53
d1jjcb275 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 97.73
d1wu7a2 327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 97.09
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 96.94
d1z7ma1 318 ATP phosphoribosyltransferase regulatory subunit H 96.81
d1jjcb177 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 96.34
d1kmma2 322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 96.24
d1h4vb2 324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 95.77
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 95.22
d1qe0a2 325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 94.59
d1c0aa3 346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 94.43
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 93.61
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 93.07
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 91.34
d1b8aa2 335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 89.81
d1l0wa3 356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 88.32
d1eova2 353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 88.21
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 86.94
d1e1oa2 342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 85.65
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 85.63
d1n9wa2 304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 84.51
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 82.76
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.7e-38  Score=306.18  Aligned_cols=180  Identities=23%  Similarity=0.383  Sum_probs=154.0

Q ss_pred             CCCCCCCCC--CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHH
Q 007872          382 IPKRKPASV--KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPG  458 (586)
Q Consensus       382 i~~~~p~~~--~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpg  458 (586)
                      ||..+|...  .....+++++++|+.|+++||+|++||+|+|+++... ++..   ++.| |.||+|+|+++||+||+||
T Consensus         2 iP~~lP~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~-~~~~---~~~i~l~NPis~e~~~lR~sLlpg   77 (207)
T d1jjcb5           2 LPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR-FRLD---PPRLLLLNPLAPEKAALRTHLFPG   77 (207)
T ss_dssp             CCCCCCCGGGTTTTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH-TTCC---CCSCEESSCSSGGGSEECSCSHHH
T ss_pred             CCCCCCCCCCCCCChhHHHHHHHHHHHHHCCcchhcCCCcCCHHHHHh-hcCC---CCcEEEeCCcchhhhhhhhhcchH
Confidence            788888543  5666778999999999999999999999999987544 3322   4578 9999999999999999999


Q ss_pred             HHHHHHhccCCCC-C-eeEEEeCcEeecCCCcccccccccEEEEEEcCC----------CCCHHHHHHHHHHHHHHhCCC
Q 007872          459 ILKTIGHNKDHPK-P-IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA----------NSGFELIHCLVDRIMEVIGTP  526 (586)
Q Consensus       459 LL~~l~~N~~~~~-~-~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~----------~~~f~~ikg~le~ll~~lgi~  526 (586)
                      ||+++++|++|+. . +++||||+||...        ++.+++++.+|.          ..+|+++||+|+.++..+|++
T Consensus        78 LL~~~~~N~~r~~~~~~~lFEiG~vf~~~--------~~~~~~~~~~g~~~~~~~~~~~~~df~~~Kg~v~~ll~~lg~~  149 (207)
T d1jjcb5          78 LVRVLKENLDLDRPERALLFEVGRVFRER--------EETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLA  149 (207)
T ss_dssp             HHHHHHHHHHHSCCSEEEEEEEEEEESSS--------EEEEEEEEEEESCBSCTTSSCCBCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCcccccccceeeEeeeeeeecc--------ccccchhhhhhcccccccccccchhHHHHHHHHHHHHHhhhcc
Confidence            9999999998765 4 7999999999643        234556666553          357999999999999999997


Q ss_pred             CCCCCCCccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHHHHHCCCCccccc
Q 007872          527 FVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNIS  583 (586)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~  583 (586)
                               +.+.+.++++|||||||.|+++|+.||++|+|||+++++|+|+ ||+.
T Consensus       150 ---------~~~~~~~~~~~hpg~~a~I~~~~~~iG~~G~l~p~i~~~~~i~-~v~~  196 (207)
T d1jjcb5         150 ---------FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHL  196 (207)
T ss_dssp             ---------EEEEECCCTTEEEEEEEEEEESSSEEEEEEEECHHHHHHTTCC-CCEE
T ss_pred             ---------cccccccCCccCCCeEEEEEECCeEEEEEEEECHHHHHHcCCC-ceEE
Confidence                     7888888899999999999999999999999999999999997 7764
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure