Citrus Sinensis ID: 007904
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | 2.2.26 [Sep-21-2011] | |||||||
| P51615 | 591 | NADP-dependent malic enzy | yes | no | 1.0 | 0.989 | 0.868 | 0.0 | |
| P34105 | 591 | NADP-dependent malic enzy | yes | no | 1.0 | 0.989 | 0.864 | 0.0 | |
| P36444 | 647 | NADP-dependent malic enzy | N/A | no | 0.977 | 0.884 | 0.815 | 0.0 | |
| P12628 | 589 | NADP-dependent malic enzy | N/A | no | 0.958 | 0.952 | 0.837 | 0.0 | |
| P43279 | 639 | NADP-dependent malic enzy | no | no | 0.950 | 0.870 | 0.814 | 0.0 | |
| Q9CA83 | 646 | NADP-dependent malic enzy | yes | no | 0.979 | 0.886 | 0.794 | 0.0 | |
| Q9XGZ0 | 588 | NADP-dependent malic enzy | no | no | 0.969 | 0.964 | 0.799 | 0.0 | |
| O82191 | 581 | NADP-dependent malic enzy | no | no | 0.977 | 0.984 | 0.816 | 0.0 | |
| P22178 | 648 | NADP-dependent malic enzy | N/A | no | 0.965 | 0.871 | 0.793 | 0.0 | |
| P37223 | 585 | NADP-dependent malic enzy | N/A | no | 0.982 | 0.982 | 0.774 | 0.0 |
| >sp|P51615|MAOX_VITVI NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1 | Back alignment and function desciption |
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Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/591 (86%), Positives = 560/591 (94%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVA RDPR
Sbjct: 1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPR 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNE
Sbjct: 61 HNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 RIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
+EFYIGL+QRRATG+EY+E L EFMS VKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 ANEFYIGLKQRRATGKEYSEFLQEFMSPVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
L FNDDIQGTASVVLAG+V+AL+L+GGTLA+H+FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LAFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKQTKC 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIV SRKDSLQ FKKPWAHEHEPV +LLDAVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKDSLQQFKKPWAHEHEPVKDLLDAVKVIKPTVLIGSSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VG+ FTKEVIEAMAS NEKPLILALSNPTSQSECTAEEAYTW++GRAIFASGSPFDP EY
Sbjct: 421 VGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
NGK FVPGQANNAYIFPG G+GLVISGAIRVHD+MLLAASEALA+QVT+ENF+KGLIYPP
Sbjct: 481 NGKTFVPGQANNAYIFPGLGMGLVISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591
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Vitis vinifera (taxid: 29760) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 0 |
| >sp|P34105|MAOX_POPTR NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3 | Back alignment and function description |
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Score = 1059 bits (2738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/591 (86%), Positives = 554/591 (93%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+KEMRDGASVLD D KSTV GGVEDVYGEDRATEDQLVTPWTISVA RDP
Sbjct: 1 MESTLKEMRDGASVLDMDPKSTVGGGVEDVYGEDRATEDQLVTPWTISVASGYTLLRDPH 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAFTEKERDAHYLRGLLPP ISQQLQEKKLMN+IRQY++PLQKY AMMELEERNE
Sbjct: 61 HNKGLAFTEKERDAHYLRGLLPPTTISQQLQEKKLMNTIRQYQLPLQKYTAMMELEERNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIF+RPQGLYISLKEKGK+L+VLKNWP++
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKVLDVLKNWPQK 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
SIQVIVVTDGERILGLGDLGCQG+GIPVGKL+LYTALGG+RPSACLP+T+DVGTNNEQLL
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGIGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEQLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
KDEFYIGLRQRRATGQEY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 KDEFYIGLRQRRATGQEYSELLHEFMTAVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTA+VVLAG+++ALKL+GG+LA+H FLFLGAGEAGTGIAELIALE+S+++K
Sbjct: 301 LVFNDDIQGTAAVVLAGLISALKLLGGSLADHTFLFLGAGEAGTGIAELIALEMSRRSKT 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI L DSKGLIVSSRK+SLQHFKKPWAHEHEPV LL+ VK IKP +LIG+SG
Sbjct: 361 PLEETRKKIWLTDSKGLIVSSRKESLQHFKKPWAHEHEPVKGLLEVVKAIKPIVLIGTSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VG+TFTKEVIEAMASFNEKPLILALSNPTSQSECTA+EAYTW+KG+AIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAMASFNEKPLILALSNPTSQSECTAQEAYTWTKGKAIFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
GKVFVPGQ+NNAYIFPG GLGLVISGAIRVHDDMLLAA+EALA Q+ EE KGLIYPP
Sbjct: 481 EGKVFVPGQSNNAYIFPGLGLGLVISGAIRVHDDMLLAAAEALAGQIKEEYLAKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
SNIRKIS IAANVAAKAYELG+ATRLPRP+NLVK AESCMY+P YR YR
Sbjct: 541 LSNIRKISVQIAANVAAKAYELGLATRLPRPENLVKHAESCMYSPAYRYYR 591
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Populus trichocarpa (taxid: 3694) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P36444|MAOC_FLAPR NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/581 (81%), Positives = 537/581 (92%), Gaps = 9/581 (1%)
Query: 14 VLDFDSK---STVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEK 64
V D +SK + V GGVEDVYGED ATED +TPW++SVA RDP HNKGLAFTEK
Sbjct: 67 VADSESKKPTAVVGGGVEDVYGEDSATEDHFITPWSVSVASGYSLLRDPHHNKGLAFTEK 126
Query: 65 ERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124
ERDAHYLRGLLPP V++ LQ KK+M++IRQYEVPLQ+Y AMM+L+ERNERLFYKLLI+N
Sbjct: 127 ERDAHYLRGLLPPVVVNHDLQVKKMMHNIRQYEVPLQRYQAMMDLQERNERLFYKLLIEN 186
Query: 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG 184
+EELLP+VYTPTVGEACQKYG+IF+ PQGLYISLK+KGK+LE+LKNWP++ IQVIVVTDG
Sbjct: 187 IEELLPIVYTPTVGEACQKYGTIFKNPQGLYISLKDKGKVLEILKNWPQKKIQVIVVTDG 246
Query: 185 ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 244
ERILGLGDLGCQGMGIPVGKL+LYTALGGIRPSACLPIT+DVGTNNE++L DEFYIGLRQ
Sbjct: 247 ERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKMLNDEFYIGLRQ 306
Query: 245 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGT 304
RRA+G+EYAEL++EFMSAVKQNYGEKVLIQFEDFANHNAF+LL KY TTHLVFNDDIQGT
Sbjct: 307 RRASGKEYAELMNEFMSAVKQNYGEKVLIQFEDFANHNAFDLLEKYRTTHLVFNDDIQGT 366
Query: 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364
ASVVLAG+++ALKL+GG+LA+H+FLFLGAGEAGTGIAELIALEISKQT AP+EETRKKI
Sbjct: 367 ASVVLAGLISALKLVGGSLADHKFLFLGAGEAGTGIAELIALEISKQTNAPLEETRKKIW 426
Query: 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 424
LVDSKGLIV SR DSLQHFKKPWAH+HEPVN LDAVK IKPT+LIGSSG G+TFTKEV+
Sbjct: 427 LVDSKGLIVRSRLDSLQHFKKPWAHDHEPVNKFLDAVKAIKPTVLIGSSGAGQTFTKEVV 486
Query: 425 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQA 484
EAM+SFNEKP+ILALSNPTSQSECTAE+AYTWS+GR IFASGSPF P EYNGKV+V GQ+
Sbjct: 487 EAMSSFNEKPIILALSNPTSQSECTAEQAYTWSEGRTIFASGSPFAPVEYNGKVYVSGQS 546
Query: 485 NNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISAN 544
NNAYIFPGFGLGL+ISGAIRVHD+MLLAASEALA+QVT+E+F+ GLIYPPF+NIRKISA+
Sbjct: 547 NNAYIFPGFGLGLIISGAIRVHDEMLLAASEALAEQVTQEHFDNGLIYPPFTNIRKISAH 606
Query: 545 IAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
IAA VAAKAYELG+A+RLP+P+NLV AESCMY+P YRNYR
Sbjct: 607 IAAKVAAKAYELGLASRLPQPENLVAYAESCMYSPKYRNYR 647
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The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Flaveria pringlei (taxid: 4226) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/567 (83%), Positives = 528/567 (93%), Gaps = 6/567 (1%)
Query: 25 GGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERDAHYLRGLLPPA 78
GGV D+YGED ATED L+TPWT SVA RDPR+NKGLAFTE ERDAHYLRGLLPP+
Sbjct: 23 GGVRDLYGEDSATEDHLITPWTFSVASGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPS 82
Query: 79 VISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVG 138
V +Q+LQEK+LM+++RQYEVPL +Y+A+M+L+ERNERLFYKLLIDNV ELLPVVYTPTVG
Sbjct: 83 VFNQELQEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKLLIDNVAELLPVVYTPTVG 142
Query: 139 EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGM 198
EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPE+SIQVIVVTDGERILGLGDLGCQGM
Sbjct: 143 EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGM 202
Query: 199 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 258
GIPVGKL+LYTALGG+RPS+CLP+T+DVGTNNE+LL DEFYIGLRQRRATGQEYA LDE
Sbjct: 203 GIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYATFLDE 262
Query: 259 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKL 318
FM AVKQNYGEKVL+QFEDFANHNAF+LL KY ++HLVFNDDIQGTASVVLAG++A+LKL
Sbjct: 263 FMRAVKQNYGEKVLVQFEDFANHNAFDLLEKYSSSHLVFNDDIQGTASVVLAGLLASLKL 322
Query: 319 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 378
+GGTLA+H FLFLGAGEAGTGIAELIA+E+SKQTKAPVEETRKKI LVDSKGLIVSSR +
Sbjct: 323 VGGTLADHTFLFLGAGEAGTGIAELIAVEVSKQTKAPVEETRKKIWLVDSKGLIVSSRLE 382
Query: 379 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438
SLQ FKKPWAHEHEPV LL+AVK IKPT+LIGSSG G+TFTKEV+E MAS NEKPLILA
Sbjct: 383 SLQQFKKPWAHEHEPVKGLLEAVKAIKPTVLIGSSGAGKTFTKEVVETMASLNEKPLILA 442
Query: 439 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLV 498
LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP EY GK+FVPGQANNAYIFPGFGLGL+
Sbjct: 443 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLI 502
Query: 499 ISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 558
+SGAIRV D+MLLAASEALA QV+EEN++KGLIYPPF+NIRKISANIAA VAAKAY+LG+
Sbjct: 503 MSGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFTNIRKISANIAAKVAAKAYDLGL 562
Query: 559 ATRLPRPQNLVKCAESCMYTPVYRNYR 585
A+ L RP++LVK AESCMY+P YR+YR
Sbjct: 563 ASHLKRPKDLVKYAESCMYSPGYRSYR 589
|
Phaseolus vulgaris (taxid: 3885) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P43279|MAOC_ORYSJ NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/567 (81%), Positives = 524/567 (92%), Gaps = 11/567 (1%)
Query: 25 GGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERDAHYLRGLLPPA 78
GGVED+ ATE+ VTPW SVA RDP HNKGLAF+EKERDAHYLRGLLPPA
Sbjct: 78 GGVEDM-----ATEEVPVTPWAFSVASGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPA 132
Query: 79 VISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVG 138
V+SQ LQ KK+M+++RQY VPLQ+Y+AMM+L+ERNERLFYKLLIDNVEELLPVVYTPTVG
Sbjct: 133 VVSQDLQVKKIMHNLRQYSVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVG 192
Query: 139 EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGM 198
EACQKYGSIFR+PQGLY+SLK+KGK+L+VL+NWPER+IQVIVVTDGERILGLGDLGCQGM
Sbjct: 193 EACQKYGSIFRQPQGLYVSLKDKGKVLDVLRNWPERNIQVIVVTDGERILGLGDLGCQGM 252
Query: 199 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 258
GIPVGKL+LYTALGG+RPSACLPIT+DVGTNNEQLL DEFYIGLRQRRATG+EY EL++E
Sbjct: 253 GIPVGKLSLYTALGGVRPSACLPITIDVGTNNEQLLNDEFYIGLRQRRATGKEYHELMEE 312
Query: 259 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKL 318
FMSAVKQ YGEKVLIQFEDFANHNAF+LLAKY +HLVFNDDIQGTASVVLAG++++LK+
Sbjct: 313 FMSAVKQIYGEKVLIQFEDFANHNAFDLLAKYSKSHLVFNDDIQGTASVVLAGLLSSLKV 372
Query: 319 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 378
+GGTLAEH +LFLGAGEAGTGIAELIALEISKQTKAP+EE RKK+ L+DSKGLIV+SRK+
Sbjct: 373 VGGTLAEHTYLFLGAGEAGTGIAELIALEISKQTKAPIEECRKKVWLLDSKGLIVNSRKE 432
Query: 379 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438
SLQ FKKPWAHEHEPV LLDAV+ IKPT+LIG+SGVG+TFTKEVIEAMASFNE+P+I +
Sbjct: 433 SLQAFKKPWAHEHEPVTTLLDAVQSIKPTVLIGTSGVGKTFTKEVIEAMASFNERPVIFS 492
Query: 439 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLV 498
LSNPTS SECTAEEAY WS+GRA+FASGSPFDP EYNGK+ VPGQ+NNAYIFPGFGLG+V
Sbjct: 493 LSNPTSHSECTAEEAYNWSQGRAVFASGSPFDPVEYNGKIHVPGQSNNAYIFPGFGLGVV 552
Query: 499 ISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 558
ISGA+RVH+DMLLAASE LA Q T+ENFEKG I+PPF+NIRKISA IAA+VAAKAYELG+
Sbjct: 553 ISGAVRVHEDMLLAASETLADQATQENFEKGSIFPPFTNIRKISARIAASVAAKAYELGL 612
Query: 559 ATRLPRPQNLVKCAESCMYTPVYRNYR 585
ATRLP+P++L K AESCMYTPVYR+YR
Sbjct: 613 ATRLPQPRDLEKYAESCMYTPVYRSYR 639
|
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|Q9CA83|MAOP4_ARATH NADP-dependent malic enzyme 4, chloroplastic OS=Arabidopsis thaliana GN=NADP-ME4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/579 (79%), Positives = 529/579 (91%), Gaps = 6/579 (1%)
Query: 13 SVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKER 66
S D KSTV GGV+DVYGED ATED +TPW++SVA RDP HNKGLAF+ +ER
Sbjct: 68 SAADIVPKSTVSGGVQDVYGEDAATEDMPITPWSLSVASGYTLLRDPHHNKGLAFSHRER 127
Query: 67 DAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVE 126
DAHYLRGLLPP VISQ LQ KK+M+++RQY+VPLQKY+AMM+L+E NERLFYKLLID+VE
Sbjct: 128 DAHYLRGLLPPTVISQDLQVKKIMHTLRQYQVPLQKYMAMMDLQETNERLFYKLLIDHVE 187
Query: 127 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 186
ELLPV+YTPTVGEACQKYGSIF RPQGL+ISLKEKGKI EVL+NWPE++IQVIVVTDGER
Sbjct: 188 ELLPVIYTPTVGEACQKYGSIFLRPQGLFISLKEKGKIHEVLRNWPEKNIQVIVVTDGER 247
Query: 187 ILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
ILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLP+T+DVGTNNE+LL DEFYIGLRQRR
Sbjct: 248 ILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQRR 307
Query: 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTAS 306
ATG+EY+EL+ EFM+AVKQNYGEKV+IQFEDFANHNAF+LLAKYGTTHLVFNDDIQGTAS
Sbjct: 308 ATGEEYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHLVFNDDIQGTAS 367
Query: 307 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366
VVLAG++AAL+ +GG+L++HRFLFLGAGEAGTGIAELIALEISK++ P+EE RK I LV
Sbjct: 368 VVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIPLEEARKNIWLV 427
Query: 367 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 426
DSKGLIVSSRK+S+QHFKKPWAH+HEP+ L+DAVK IKPT+LIG+SGVG+TFT++V+E
Sbjct: 428 DSKGLIVSSRKESIQHFKKPWAHDHEPIRELVDAVKAIKPTVLIGTSGVGQTFTQDVVET 487
Query: 427 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANN 486
MA NEKP+IL+LSNPTSQSECTAEEAYTWS+GRAIFASGSPF P EY GK FVPGQANN
Sbjct: 488 MAKLNEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYEGKTFVPGQANN 547
Query: 487 AYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIA 546
AYIFPGFGLGL++SG IRVHDDMLLAASEALA+++ EE++EKG+IYPPF NIRKISA IA
Sbjct: 548 AYIFPGFGLGLIMSGTIRVHDDMLLAASEALAEELMEEHYEKGMIYPPFRNIRKISARIA 607
Query: 547 ANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
A VAAKAYELG+ATRLP+P+ L +CAES MY+P YR+YR
Sbjct: 608 AKVAAKAYELGLATRLPQPKELEQCAESSMYSPSYRSYR 646
|
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|Q9XGZ0|MAOP3_ARATH NADP-dependent malic enzyme 3 OS=Arabidopsis thaliana GN=NADP-ME3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/573 (79%), Positives = 522/573 (91%), Gaps = 6/573 (1%)
Query: 19 SKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERDAHYLR 72
+ S V GG+ DVYGED AT DQLVTPW SVA RDPR+NKGLAFT+KERDAHY+
Sbjct: 16 NSSGVGGGISDVYGEDSATLDQLVTPWVTSVASGYTLMRDPRYNKGLAFTDKERDAHYIT 75
Query: 73 GLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVV 132
GLLPP V+SQ +QE+K+M+++RQY VPLQ+Y+A+M+L+ERNERLFYKLLIDNVEELLPVV
Sbjct: 76 GLLPPVVLSQDVQERKVMHNLRQYTVPLQRYMALMDLQERNERLFYKLLIDNVEELLPVV 135
Query: 133 YTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGD 192
YTPTVGEACQKYGSI+RRPQGLYISLKEKGKILEVLKNWP+R IQVIVVTDGERILGLGD
Sbjct: 136 YTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPQRGIQVIVVTDGERILGLGD 195
Query: 193 LGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEY 252
LGCQGMGIPVGKL+LYTALGGIRPSACLPIT+DVGTNNE+LL +EFYIGL+Q+RA G+EY
Sbjct: 196 LGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKLLNNEFYIGLKQKRANGEEY 255
Query: 253 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGV 312
AE L EFM AVKQNYGEKVL+QFEDFANH+AFELL+KY ++HLVFNDDIQGTASVVLAG+
Sbjct: 256 AEFLQEFMCAVKQNYGEKVLVQFEDFANHHAFELLSKYCSSHLVFNDDIQGTASVVLAGL 315
Query: 313 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372
+AA K++G +LA+H FLFLGAGEAGTGIAELIAL+ISK+T P++ETRKKI LVDSKGLI
Sbjct: 316 IAAQKVLGKSLADHTFLFLGAGEAGTGIAELIALKISKETGKPIDETRKKIWLVDSKGLI 375
Query: 373 VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 432
VS RK+SLQHFK+PWAH+H+PV LL AV IKPT+LIG+SGVG+TFTKEV+EAMA+ NE
Sbjct: 376 VSERKESLQHFKQPWAHDHKPVKELLAAVNAIKPTVLIGTSGVGKTFTKEVVEAMATLNE 435
Query: 433 KPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPG 492
KPLILALSNPTSQ+ECTAEEAYTW+KGRAIFASGSPFDP +Y+GK F PGQANN YIFPG
Sbjct: 436 KPLILALSNPTSQAECTAEEAYTWTKGRAIFASGSPFDPVQYDGKKFTPGQANNCYIFPG 495
Query: 493 FGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAK 552
GLGL++SGAIRV DDMLLAASEALA QVTEENF GLIYPPF+NIRKISANIAA+V AK
Sbjct: 496 LGLGLIMSGAIRVRDDMLLAASEALASQVTEENFANGLIYPPFANIRKISANIAASVGAK 555
Query: 553 AYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
YELG+A+ LPRP++LVK AESCMY+PVYRN+R
Sbjct: 556 TYELGLASNLPRPKDLVKMAESCMYSPVYRNFR 588
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|O82191|MAOP1_ARATH NADP-dependent malic enzyme 1 OS=Arabidopsis thaliana GN=NADP-ME1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/578 (81%), Positives = 528/578 (91%), Gaps = 6/578 (1%)
Query: 14 VLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERD 67
V + D KS+V+GGV DVYGED AT + +TPW++SV+ RDPR+NKGLAFTEKERD
Sbjct: 4 VTNSDLKSSVDGGVVDVYGEDSATIEHNITPWSLSVSSGYSLLRDPRYNKGLAFTEKERD 63
Query: 68 AHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEE 127
HYLRGLLPP V+ Q+LQEK+L+N+IRQY+ PLQKY+A+ EL+ERNERLFYKLLIDNVEE
Sbjct: 64 THYLRGLLPPVVLDQKLQEKRLLNNIRQYQFPLQKYMALTELQERNERLFYKLLIDNVEE 123
Query: 128 LLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 187
LLP+VYTPTVGEACQK+GSIFRRPQGL+ISLK+KGKIL+VLKNWPER+IQVIVVTDGERI
Sbjct: 124 LLPIVYTPTVGEACQKFGSIFRRPQGLFISLKDKGKILDVLKNWPERNIQVIVVTDGERI 183
Query: 188 LGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRA 247
LGLGDLGCQGMGIPVGKLALY+ALGG+RPSACLP+T+DVGTNNE+LL DEFYIGLRQ+RA
Sbjct: 184 LGLGDLGCQGMGIPVGKLALYSALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQKRA 243
Query: 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASV 307
TGQEY+ELL+EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY THLVFNDDIQGTASV
Sbjct: 244 TGQEYSELLNEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYSDTHLVFNDDIQGTASV 303
Query: 308 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 367
VLAG+V+A KL LAEH FLFLGAGEAGTGIAELIAL +SKQ A VEE+RKKI LVD
Sbjct: 304 VLAGLVSAQKLTNSPLAEHTFLFLGAGEAGTGIAELIALYMSKQMNASVEESRKKIWLVD 363
Query: 368 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM 427
SKGLIV+SRKDSLQ FKKPWAHEHEPV +LL A+K IKPT+LIGSSGVGR+FTKEVIEAM
Sbjct: 364 SKGLIVNSRKDSLQDFKKPWAHEHEPVKDLLGAIKAIKPTVLIGSSGVGRSFTKEVIEAM 423
Query: 428 ASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNA 487
+S NE+PLI+ALSNPT+QSECTAEEAYTWSKGRAIFASGSPFDP EY GKVFV QANNA
Sbjct: 424 SSINERPLIMALSNPTTQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKVFVSTQANNA 483
Query: 488 YIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAA 547
YIFPGFGLGLVISGAIRVHDDMLLAA+EALA QV++EN+EKG+IYP FS+IRKISA IAA
Sbjct: 484 YIFPGFGLGLVISGAIRVHDDMLLAAAEALAGQVSKENYEKGMIYPSFSSIRKISAQIAA 543
Query: 548 NVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
NVA KAYELG+A RLPRP+++VKCAES MY+P YR YR
Sbjct: 544 NVATKAYELGLAGRLPRPKDIVKCAESSMYSPTYRLYR 581
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P22178|MAOC_FLATR NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/572 (79%), Positives = 522/572 (91%), Gaps = 7/572 (1%)
Query: 21 STVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERDAHYLRGL 74
+ V GGVED+YGED ATED +TPW++SVA RDP HNKGLAFTEKERDAH+LRGL
Sbjct: 77 AAVGGGVEDMYGEDTATEDHYITPWSVSVASGYSLLRDPHHNKGLAFTEKERDAHFLRGL 136
Query: 75 LPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYT 134
LPP V++ LQ KK+M++IRQY+VPLQ+Y AMM+L++RNERLFYKLLI+NVEELLP+VYT
Sbjct: 137 LPPVVVNHDLQVKKMMHNIRQYQVPLQRYQAMMDLQQRNERLFYKLLIENVEELLPIVYT 196
Query: 135 PTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 194
PTVGEACQKYGSIF QGL+ISLK+KG+ILE+LKNWP + IQVIVVTDGERILGLGDLG
Sbjct: 197 PTVGEACQKYGSIFENSQGLFISLKDKGRILEILKNWPHKKIQVIVVTDGERILGLGDLG 256
Query: 195 CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD-EFYIGLRQRRATGQEYA 253
CQGMGIPVGKLALYTALGG+RPSACLPIT+DVGTNNE+LL D EFYIGL+Q+RA GQEYA
Sbjct: 257 CQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDDEFYIGLKQKRAAGQEYA 316
Query: 254 ELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVV 313
EL++EFMSAVKQNYGE +LIQFEDFANHNAF+LL KY TTHLVFNDDIQGTASVVL G++
Sbjct: 317 ELMNEFMSAVKQNYGENLLIQFEDFANHNAFDLLEKYRTTHLVFNDDIQGTASVVLGGLI 376
Query: 314 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 373
+ALKL+GG+LA+ +FLFLGAGEAGTGIAELIALEISKQT P+EE+RKK+ LVDSKGLIV
Sbjct: 377 SALKLVGGSLADQKFLFLGAGEAGTGIAELIALEISKQTNIPLEESRKKVWLVDSKGLIV 436
Query: 374 SSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK 433
SR DSLQHFKKPWAH+HEPVN LDA+K I+PT+LIGSSG G+TFTKEV+E M+S NEK
Sbjct: 437 RSRLDSLQHFKKPWAHDHEPVNEFLDAIKTIRPTVLIGSSGTGQTFTKEVVETMSSLNEK 496
Query: 434 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGF 493
P+ILALSNPTSQSECTAE+AYTWS+GRAIFASGSPF P EYNGK++V GQANNAYIFPGF
Sbjct: 497 PIILALSNPTSQSECTAEQAYTWSEGRAIFASGSPFKPVEYNGKLYVSGQANNAYIFPGF 556
Query: 494 GLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKA 553
GLGL+ISGAIRVHDDMLLAASEA A+QVT+E+F+KGLI+PPF++IRKISA+IAA VAAKA
Sbjct: 557 GLGLIISGAIRVHDDMLLAASEAPAEQVTQEHFDKGLIFPPFTSIRKISAHIAAKVAAKA 616
Query: 554 YELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
YELG+A+RLP+P+NLV AESCMY+P YR YR
Sbjct: 617 YELGLASRLPQPENLVAYAESCMYSPKYRIYR 648
|
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Flaveria trinervia (taxid: 4227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P37223|MAOX_MESCR NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/589 (77%), Positives = 530/589 (89%), Gaps = 14/589 (2%)
Query: 3 STMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHN 56
+ + EM +G+ + GGV DVYGE+ AT+DQLVTPW+ SVA RDP+HN
Sbjct: 5 NALNEMTNGSD--------GITGGVADVYGEEFATQDQLVTPWSFSVACGHSLLRDPQHN 56
Query: 57 KGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERL 116
KGLAFTEKERDAH+LRGLLPP V+SQ+LQEKK + ++RQY+VPLQKY+AMM+L+ERNE+L
Sbjct: 57 KGLAFTEKERDAHFLRGLLPPVVLSQELQEKKFLTTLRQYQVPLQKYMAMMDLQERNEKL 116
Query: 117 FYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSI 176
FYKLL+D+VEELLP+VYTPTVGE CQKYGSIFRRPQGL+ISLK+KG+ILE+L+NWPE+ I
Sbjct: 117 FYKLLVDHVEELLPLVYTPTVGEGCQKYGSIFRRPQGLFISLKDKGRILELLRNWPEKKI 176
Query: 177 QVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 236
QVIVVTDGERILGLGDLGCQGMGIPVGKL+LY+ALGG+ PSACLPIT+DVGTNN++LL D
Sbjct: 177 QVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVCPSACLPITLDVGTNNQKLLDD 236
Query: 237 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLV 296
EFYIGL+Q+RATG+EYAE + EFMSAVKQNYGEK+L+QFEDFANHNAFELL KY TTHLV
Sbjct: 237 EFYIGLKQKRATGEEYAEFVQEFMSAVKQNYGEKILVQFEDFANHNAFELLEKYRTTHLV 296
Query: 297 FNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPV 356
FNDDIQGTASVVLAG++A+LKL+GGTLA+H+FLFLGAGEAGTGIAELIALE+SK+TKAPV
Sbjct: 297 FNDDIQGTASVVLAGLIASLKLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKKTKAPV 356
Query: 357 EETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG 416
E+ RKKI LVDSKGL+VSSRK++LQ FK PWAHEHEP+ L+DAV+ IKPT+LIG+SG G
Sbjct: 357 EQMRKKIWLVDSKGLVVSSRKETLQQFKLPWAHEHEPITTLIDAVQAIKPTVLIGTSGKG 416
Query: 417 RTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNG 476
+ FTKEV+EAMA+ N KPLILALSNPTSQSECTAEEAYTWS+G AIFASGSPFDP EY G
Sbjct: 417 KQFTKEVVEAMANINAKPLILALSNPTSQSECTAEEAYTWSQGHAIFASGSPFDPVEYEG 476
Query: 477 KVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFS 536
+ FVPGQANNAYIFPGFGLGL++ GAIRVHDDMLLAASEALA QVT E+F KGLIYPPF
Sbjct: 477 RTFVPGQANNAYIFPGFGLGLIMCGAIRVHDDMLLAASEALASQVTGEHFIKGLIYPPFK 536
Query: 537 NIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
+IRKISA+IAA VAAKAYELG+A+RLP+P +LVK AESCMY P YR++R
Sbjct: 537 DIRKISAHIAAGVAAKAYELGLASRLPQPADLVKFAESCMYNPTYRSFR 585
|
Plays a role in CAM (crassulacean acid metabolism) photosynthesis. Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| 255546341 | 591 | malic enzyme, putative [Ricinus communis | 1.0 | 0.989 | 0.896 | 0.0 | |
| 356513167 | 633 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.924 | 0.890 | 0.0 | |
| 225445108 | 591 | PREDICTED: NADP-dependent malic enzyme [ | 1.0 | 0.989 | 0.871 | 0.0 | |
| 1708924 | 591 | RecName: Full=NADP-dependent malic enzym | 1.0 | 0.989 | 0.868 | 0.0 | |
| 356558908 | 591 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.989 | 0.873 | 0.0 | |
| 449435772 | 591 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.989 | 0.874 | 0.0 | |
| 225442481 | 640 | PREDICTED: NADP-dependent malic enzyme [ | 1.0 | 0.914 | 0.849 | 0.0 | |
| 356495891 | 591 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.989 | 0.864 | 0.0 | |
| 1561774 | 640 | malate dehydrogenase [Vitis vinifera] | 1.0 | 0.914 | 0.847 | 0.0 | |
| 224142207 | 591 | predicted protein [Populus trichocarpa] | 1.0 | 0.989 | 0.869 | 0.0 |
| >gi|255546341|ref|XP_002514230.1| malic enzyme, putative [Ricinus communis] gi|223546686|gb|EEF48184.1| malic enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/591 (89%), Positives = 563/591 (95%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MESTMKEMR GASVLD D KSTV GGVEDVYGED ATEDQLVTPWT SVA RDPR
Sbjct: 1 MESTMKEMRGGASVLDMDPKSTVGGGVEDVYGEDCATEDQLVTPWTTSVASGYSLLRDPR 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAF+EKERDAHYLRGLLPP V +QQLQEKKLM++IRQY++PLQKY+AMMELEERNE
Sbjct: 61 HNKGLAFSEKERDAHYLRGLLPPVVATQQLQEKKLMHTIRQYQLPLQKYMAMMELEERNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLP+VYTPTVGEACQKYGSIF+RPQGLYISLKEKGKIL+VLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKILDVLKNWPER 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
DEFYIGLRQRRATGQEY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH
Sbjct: 241 NDEFYIGLRQRRATGQEYSELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTASVVLAGV+AALKL+GG+L++H FLFLGAGEAGTGIAELIALE+SK+T A
Sbjct: 301 LVFNDDIQGTASVVLAGVIAALKLLGGSLSDHTFLFLGAGEAGTGIAELIALEMSKRTNA 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIVSSRKDSLQHFK+PWAHEHEPV NLLDAVK IKPT+LIGSSG
Sbjct: 361 PLEETRKKIWLVDSKGLIVSSRKDSLQHFKQPWAHEHEPVKNLLDAVKAIKPTVLIGSSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VGRTFTKEVIEAMAS NEKPLIL+LSNPTSQSECTAEEAYTW+KG+A FASGSPFDP EY
Sbjct: 421 VGRTFTKEVIEAMASLNEKPLILSLSNPTSQSECTAEEAYTWTKGKATFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
GKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA QVTEENF KGLIYPP
Sbjct: 481 EGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALASQVTEENFSKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIRKISA+IAANVAAKAYELG+ATRLPRP+NL+K AESCMY+PVYRNYR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPRPENLMKYAESCMYSPVYRNYR 591
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513167|ref|XP_003525285.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/591 (89%), Positives = 561/591 (94%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+K +RDG SVLD +STV GGVED+YGEDRATEDQLVTPW SVA RDP+
Sbjct: 43 MESTLKALRDGESVLDLSPRSTVSGGVEDIYGEDRATEDQLVTPWIFSVASGYSLLRDPQ 102
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
+NKGL+FTEKERDAHYLRGLLPP V +QQLQEKKLMNSIRQY+VPLQKYVAMM+L+ERNE
Sbjct: 103 YNKGLSFTEKERDAHYLRGLLPPTVSTQQLQEKKLMNSIRQYQVPLQKYVAMMDLQERNE 162
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 163 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 222
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 223 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 282
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
DEFYIGLRQRRATGQEY +L+ EFM+AVKQNYGEKVL+QFEDFANHNAFELLAKYGTTH
Sbjct: 283 NDEFYIGLRQRRATGQEYYDLMHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTH 342
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTASVVLAGVVAALKLIGGTL EH FLFLGAGEAGTGIAELIALE+SKQTKA
Sbjct: 343 LVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQTKA 402
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EE+RKKI LVDSKGLIVSSRK+SLQHFKKPWAHEHEPVN+LL+AVKVIKPT+LIGSSG
Sbjct: 403 PIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSG 462
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VGRTFTKEV+EAM S N+KPLILALSNPTSQSECTAEEAY WS+GRAIFASGSPFDP EY
Sbjct: 463 VGRTFTKEVVEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEY 522
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
GKV+ GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE+LAKQV+EEN++ GLIYPP
Sbjct: 523 KGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASESLAKQVSEENYKNGLIYPP 582
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIR+ISANIAANVAAKAYELG+ATRLPRPQNLVKCAESCMYTPVYRNYR
Sbjct: 583 FSNIRRISANIAANVAAKAYELGLATRLPRPQNLVKCAESCMYTPVYRNYR 633
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445108|ref|XP_002283751.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297738764|emb|CBI28009.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/591 (87%), Positives = 562/591 (95%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVA RDPR
Sbjct: 1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPR 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNE
Sbjct: 61 HNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 RIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
+EFYIGL+QRRATG+EY+E L EFMSAVKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 ANEFYIGLKQRRATGKEYSEFLQEFMSAVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTASVVLAG+V+AL+L+GGTLA+H+FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LVFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKQTKC 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIVSSRKDSLQ FKKPWAHEHEPV +LL AVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVSSRKDSLQQFKKPWAHEHEPVKDLLHAVKVIKPTVLIGSSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VG+ FTKEVIEAMAS NEKPLILALSNPTSQSECTAEEAYTW++GRAIFASGSPFDP EY
Sbjct: 421 VGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
NGK FVPGQANNAYIFPG G+GLVISGAIRVHD+MLLAASEALA+QVT+ENF+KGLIYPP
Sbjct: 481 NGKTFVPGQANNAYIFPGLGMGLVISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708924|sp|P51615.1|MAOX_VITVI RecName: Full=NADP-dependent malic enzyme; Short=NADP-ME gi|515759|gb|AAA67087.1| malate dehydrogenase (NADP+) [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/591 (86%), Positives = 560/591 (94%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVA RDPR
Sbjct: 1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPR 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNE
Sbjct: 61 HNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 RIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
+EFYIGL+QRRATG+EY+E L EFMS VKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 ANEFYIGLKQRRATGKEYSEFLQEFMSPVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
L FNDDIQGTASVVLAG+V+AL+L+GGTLA+H+FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LAFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKQTKC 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIV SRKDSLQ FKKPWAHEHEPV +LLDAVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKDSLQQFKKPWAHEHEPVKDLLDAVKVIKPTVLIGSSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VG+ FTKEVIEAMAS NEKPLILALSNPTSQSECTAEEAYTW++GRAIFASGSPFDP EY
Sbjct: 421 VGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
NGK FVPGQANNAYIFPG G+GLVISGAIRVHD+MLLAASEALA+QVT+ENF+KGLIYPP
Sbjct: 481 NGKTFVPGQANNAYIFPGLGMGLVISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558908|ref|XP_003547744.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/591 (87%), Positives = 553/591 (93%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+K +RDG SVLD +STV GGVEDVYGED ATEDQLVTPW SVA RDP+
Sbjct: 1 MESTLKALRDGESVLDLSPRSTVSGGVEDVYGEDHATEDQLVTPWNFSVASGYSLLRDPQ 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
+NKGLAFTEKERDAHYLRGLLPP + SQQLQEK+L+N+IRQY+VPLQKY AMMEL+E NE
Sbjct: 61 YNKGLAFTEKERDAHYLRGLLPPTITSQQLQEKQLINNIRQYQVPLQKYQAMMELQETNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLID+VEELLP+VYTP VGEACQKYGSIF+RPQGL+ISLKEKGK+LEVLKNWPER
Sbjct: 121 RLFYKLLIDHVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKVLEVLKNWPER 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
DEFYIGLRQ+RATGQEY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH
Sbjct: 241 NDEFYIGLRQKRATGQEYSELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTASVVLAGVVAALKLIGG LA+H FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LVFNDDIQGTASVVLAGVVAALKLIGGNLADHTFLFLGAGEAGTGIAELIALEMSKQTKT 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIV SRK SLQHFK+PWAHEHEPV +LL+AVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKASLQHFKQPWAHEHEPVGSLLEAVKVIKPTVLIGSSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VG+TFTKEVIEA+ S NEKPL+LALSNPTSQSECTAEEAY WS+GRAIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAVTSINEKPLVLALSNPTSQSECTAEEAYEWSEGRAIFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
GKV+ GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK VTEEN+EKGLIYPP
Sbjct: 481 KGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVTEENYEKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIRKISANIAA+VAAKAYELG+ATRLPRPQNLVK AESCMYTPVYRNYR
Sbjct: 541 FSNIRKISANIAASVAAKAYELGLATRLPRPQNLVKYAESCMYTPVYRNYR 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435772|ref|XP_004135668.1| PREDICTED: NADP-dependent malic enzyme-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/591 (87%), Positives = 560/591 (94%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+KE+ DG SVLD D K+TV GGVED+YGED ATE+QLVTPWT SVA RDP
Sbjct: 1 MESTLKEIGDGGSVLDLDPKATVGGGVEDIYGEDCATEEQLVTPWTFSVASGYSLLRDPH 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAFTEKERDAHYLRGLLPPA+++QQLQEKKLM +IRQY++PLQK++AMMEL+ERNE
Sbjct: 61 HNKGLAFTEKERDAHYLRGLLPPAIVTQQLQEKKLMQNIRQYQLPLQKFIAMMELQERNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLL+DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWP+R
Sbjct: 121 RLFYKLLVDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPQR 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
SIQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
DEFYIGL+QRRATG+EY ELLDEFM+AVKQNYGEKVLIQFEDFANHNAFELLAKY TTH
Sbjct: 241 NDEFYIGLKQRRATGEEYYELLDEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYRTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTA+VVLAG V+ALKLIGGTLA+H FLFLGAGEAGTGIAELIALE+SKQTKA
Sbjct: 301 LVFNDDIQGTAAVVLAGAVSALKLIGGTLADHTFLFLGAGEAGTGIAELIALEVSKQTKA 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
PVEETRKKI LVDSKGLIV SRKDSLQHFKKPWAHEHEPV +LL AVK IKPT+LIGSSG
Sbjct: 361 PVEETRKKIWLVDSKGLIVHSRKDSLQHFKKPWAHEHEPVKDLLSAVKAIKPTVLIGSSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VGRTFTKEV+EA++S NEKPLI+ALSNPTSQSECTAEEAYTWS+GRAIFASGSPFDPFEY
Sbjct: 421 VGRTFTKEVVEAVSSINEKPLIMALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPFEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
NGK FVPGQ+NNAYIFPGFGLG+VISGAIRVHDDMLLAASEALA QV+EEN++KGLIYPP
Sbjct: 481 NGKTFVPGQSNNAYIFPGFGLGVVISGAIRVHDDMLLAASEALAAQVSEENYDKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
F+NIRKISANIAANVAAKAYELG+ATRLPRP +LVK AESCMY+PVYR YR
Sbjct: 541 FTNIRKISANIAANVAAKAYELGLATRLPRPADLVKYAESCMYSPVYRTYR 591
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442481|ref|XP_002283814.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297743201|emb|CBI36068.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/591 (84%), Positives = 557/591 (94%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+KE+RDG +VL+ DSKS V GGV DV GED ATEDQ+VTPWTI+VA R+P
Sbjct: 50 MESTLKELRDGNTVLEVDSKSAVSGGVRDVQGEDAATEDQIVTPWTITVASGYSLLRNPH 109
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAFTEKERD HYLRGLLPPAV+SQ LQ KKLM +IRQY VPLQKY+AMM+L+ERNE
Sbjct: 110 HNKGLAFTEKERDHHYLRGLLPPAVVSQDLQVKKLMANIRQYTVPLQKYMAMMDLQERNE 169
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
+LFYKLL+DNVEELLPVVYTPTVGEACQKYG I RRPQGL+ISL EKGKILEVLKNWPE+
Sbjct: 170 KLFYKLLMDNVEELLPVVYTPTVGEACQKYGGILRRPQGLFISLNEKGKILEVLKNWPEK 229
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
+IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLP+T+DVGTNN++LL
Sbjct: 230 NIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNQKLL 289
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
DEFYIGLRQ+RATGQEYAEL+ EFM AVKQNYGEKVL+QFEDFANHNAF+LLA+YGTTH
Sbjct: 290 DDEFYIGLRQKRATGQEYAELIHEFMCAVKQNYGEKVLVQFEDFANHNAFDLLARYGTTH 349
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTASVVLAG+++AL L+GGTLAEH FLFLGAGEAGTGIAELIALE+SKQT+A
Sbjct: 350 LVFNDDIQGTASVVLAGLISALNLVGGTLAEHTFLFLGAGEAGTGIAELIALEMSKQTQA 409
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIVSSR DSLQHFKKPWAHEHEP+ NL+DAVK IKPT+LIGSSG
Sbjct: 410 PLEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHEHEPIKNLVDAVKAIKPTVLIGSSG 469
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VGRTFTKEV+EAMASFNEKP+ILALSNPTSQSECTAEEAYTWS+GRAIFASGSPFDP EY
Sbjct: 470 VGRTFTKEVVEAMASFNEKPIILALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPVEY 529
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
NGKVFVPGQ+NNAYIFPGFGLGL+ISGAIRVHDDMLLAASEALAKQ T+ENF+KG+IYPP
Sbjct: 530 NGKVFVPGQSNNAYIFPGFGLGLIISGAIRVHDDMLLAASEALAKQATQENFDKGMIYPP 589
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLV+ AE+CMY+PVYR++R
Sbjct: 590 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVEYAENCMYSPVYRSFR 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495891|ref|XP_003516804.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1066 bits (2758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/591 (86%), Positives = 551/591 (93%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+K +RDG SVLD +STV GGVEDVYGED ATEDQLVTPW SVA RDP+
Sbjct: 1 MESTLKALRDGESVLDLSPRSTVSGGVEDVYGEDHATEDQLVTPWNFSVASGYCLLRDPQ 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
+NKGLAFTEKERDAHYLRGLLPP + SQQLQ K+L+N+IRQY+VPLQKY AMMEL+E NE
Sbjct: 61 YNKGLAFTEKERDAHYLRGLLPPTITSQQLQGKQLINNIRQYQVPLQKYQAMMELQETNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLP+VYTP VGEACQKYGSIF+RPQGL+ISLKEKGKILEVLKNWPE+
Sbjct: 121 RLFYKLLIDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKILEVLKNWPEK 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
DEFYIGLRQ+RATGQEY+ELL EFM+AVKQNYGEKVL+QFEDFANHNAFELLAKYGTTH
Sbjct: 241 NDEFYIGLRQKRATGQEYSELLHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTASVVLAGVVAALKLIGGTLA+H FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LVFNDDIQGTASVVLAGVVAALKLIGGTLADHTFLFLGAGEAGTGIAELIALEMSKQTKT 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIV SRK SLQHFK+PWAHEHEPV +LL+AVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKASLQHFKQPWAHEHEPVGSLLEAVKVIKPTVLIGSSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VG+TFTKEVIEA+ S NEKPL+LALSNPTSQSECTAEEAY WS+GRAIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAVTSINEKPLVLALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
GKV+ GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK V+ EN+EKGLIYPP
Sbjct: 481 KGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVSNENYEKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIR+ISANIAA+VA KAYELG+ATRLPRPQNLVK AESCMY+PVYRNYR
Sbjct: 541 FSNIREISANIAASVAGKAYELGLATRLPRPQNLVKYAESCMYSPVYRNYR 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1561774|gb|AAB08874.1| malate dehydrogenase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/591 (84%), Positives = 556/591 (94%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+KE+RDG +VL+ DSKS V GGV DV GED ATEDQ+VTPWTI+VA R+P
Sbjct: 50 MESTLKELRDGNTVLEVDSKSAVSGGVRDVQGEDAATEDQIVTPWTITVASGYSLLRNPH 109
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAFTEKERD HYLRGLLPPAV+SQ LQ KKLM +IRQY VPLQKY+AMM+L+ERNE
Sbjct: 110 HNKGLAFTEKERDHHYLRGLLPPAVVSQDLQVKKLMANIRQYTVPLQKYMAMMDLQERNE 169
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
+LFYKLL+DNVEELLPVVYTPTVGEACQKYG I RRPQGL+ISL EKGKILEVLKNWPE+
Sbjct: 170 KLFYKLLMDNVEELLPVVYTPTVGEACQKYGGILRRPQGLFISLNEKGKILEVLKNWPEK 229
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
+IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLP+T+DVGTNN++LL
Sbjct: 230 NIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNQKLL 289
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
DEFYIGLRQ+RATGQEYAEL+ EFM AVKQNYGEKVL+QFEDFANHNAF+LLA+YGTTH
Sbjct: 290 DDEFYIGLRQKRATGQEYAELIHEFMCAVKQNYGEKVLVQFEDFANHNAFDLLARYGTTH 349
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTASVVLAG+++AL L+GGTLAEH FLFLGAGEAGTGIAELIALE+SKQT+A
Sbjct: 350 LVFNDDIQGTASVVLAGLISALNLVGGTLAEHTFLFLGAGEAGTGIAELIALEMSKQTQA 409
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI LVDSKGLIVSSR DSLQHFKKPWAHEHEP+ NL+DAVK IKPT+LIGSSG
Sbjct: 410 PLEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHEHEPIKNLVDAVKAIKPTVLIGSSG 469
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VGRTFTKEV+EAMASFNEKP+ILALSNPTSQSECTAEEAYTWS+GRAIFASGSPFDP EY
Sbjct: 470 VGRTFTKEVVEAMASFNEKPIILALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPVEY 529
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
NGKVFVPGQ+NNAYIFPGFGLGL+ISGAIRVHDDMLLAASEALAKQ T+ENF+KG+IYPP
Sbjct: 530 NGKVFVPGQSNNAYIFPGFGLGLIISGAIRVHDDMLLAASEALAKQATQENFDKGMIYPP 589
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLV+ AE+CMY+P YR++R
Sbjct: 590 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVEYAENCMYSPAYRSFR 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142207|ref|XP_002324450.1| predicted protein [Populus trichocarpa] gi|222865884|gb|EEF03015.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/591 (86%), Positives = 557/591 (94%), Gaps = 6/591 (1%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPR 54
MEST+KEMRDGASVLD D KSTV GGVEDVYGEDRATEDQLVTPWTISVA RDP+
Sbjct: 1 MESTLKEMRDGASVLDMDPKSTVGGGVEDVYGEDRATEDQLVTPWTISVASGFTLLRDPQ 60
Query: 55 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 114
HNKGLAFTEKERDAHYLRGLLPPA ISQQLQEKKLMN+IRQY++PLQKY AMMELEERNE
Sbjct: 61 HNKGLAFTEKERDAHYLRGLLPPATISQQLQEKKLMNTIRQYQLPLQKYTAMMELEERNE 120
Query: 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 174
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIF+RPQGLYISLKEKGK+L+VLKNWP++
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKVLDVLKNWPQK 180
Query: 175 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 234
SIQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLP+T+DVGTNNEQLL
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEQLL 240
Query: 235 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 294
KDEFYIGLRQ+RATGQEY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 KDEFYIGLRQKRATGQEYSELLHEFMTAVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 295 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
LVFNDDIQGTA+VVLAG+++ALKL+GG+LA+H FLFLGAGEAGTGIAELIALE+S+++K
Sbjct: 301 LVFNDDIQGTAAVVLAGLISALKLLGGSLADHTFLFLGAGEAGTGIAELIALEMSRRSKT 360
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
P+EETRKKI L DSKGLIVSSRK+SLQHFKKPWAHEHEPV LL+ VK IKPT+LIG+SG
Sbjct: 361 PLEETRKKIWLTDSKGLIVSSRKESLQHFKKPWAHEHEPVKGLLEVVKAIKPTVLIGTSG 420
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 474
VG+TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW+KG+AIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWTKGKAIFASGSPFDPVEY 480
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 534
GKVFVPGQ+NNAYIFPG GLGLVISGAIRVHDDMLLAA+EALA Q+ EE KGLIYPP
Sbjct: 481 EGKVFVPGQSNNAYIFPGLGLGLVISGAIRVHDDMLLAAAEALAGQIKEEYLAKGLIYPP 540
Query: 535 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
SNIRKIS IAANVAAKAYELG+ATRLPRP+NLVK AESCMY+P YR YR
Sbjct: 541 LSNIRKISVQIAANVAAKAYELGLATRLPRPENLVKHAESCMYSPAYRYYR 591
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| TAIR|locus:2052045 | 581 | NADP-ME1 "NADP-malic enzyme 1" | 0.977 | 0.984 | 0.773 | 1.9e-241 | |
| TAIR|locus:2017854 | 646 | NADP-ME4 "NADP-malic enzyme 4" | 0.979 | 0.886 | 0.749 | 7.4e-240 | |
| TAIR|locus:2180547 | 588 | NADP-ME3 "NADP-malic enzyme 3" | 0.969 | 0.964 | 0.757 | 1.6e-237 | |
| TAIR|locus:2181980 | 588 | NADP-ME2 "NADP-malic enzyme 2" | 0.970 | 0.965 | 0.756 | 2.3e-236 | |
| UNIPROTKB|F1P0Y6 | 576 | ME1 "Malic enzyme" [Gallus gal | 0.928 | 0.942 | 0.496 | 2.9e-142 | |
| RGD|3074 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.907 | 0.928 | 0.5 | 8e-140 | |
| UNIPROTKB|P13697 | 572 | Me1 "NADP-dependent malic enzy | 0.907 | 0.928 | 0.5 | 8e-140 | |
| MGI|MGI:97043 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.907 | 0.928 | 0.5 | 1.3e-139 | |
| ZFIN|ZDB-GENE-040801-147 | 581 | me2 "malic enzyme 2, NAD(+)-de | 0.907 | 0.913 | 0.486 | 4.4e-139 | |
| UNIPROTKB|E1C7M4 | 541 | ME1 "Malic enzyme" [Gallus gal | 0.895 | 0.968 | 0.497 | 1.9e-138 |
| TAIR|locus:2052045 NADP-ME1 "NADP-malic enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2327 (824.2 bits), Expect = 1.9e-241, P = 1.9e-241
Identities = 447/578 (77%), Positives = 501/578 (86%)
Query: 14 VLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERD 67
V + D KS+V+GGV DVYGED AT + +TPW++SV+ RDPR+NKGLAFTEKERD
Sbjct: 4 VTNSDLKSSVDGGVVDVYGEDSATIEHNITPWSLSVSSGYSLLRDPRYNKGLAFTEKERD 63
Query: 68 AHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEE 127
HYLRGLLPP V+ Q+LQEK+L+N+IRQY+ PLQKY+A+ EL+ERNERLFYKLLIDNVEE
Sbjct: 64 THYLRGLLPPVVLDQKLQEKRLLNNIRQYQFPLQKYMALTELQERNERLFYKLLIDNVEE 123
Query: 128 LLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 187
LLP+VYTPTVGEACQK+GSIFRRPQGL+ISLK+KGKIL+VLKNWPER+IQVIVVTDGERI
Sbjct: 124 LLPIVYTPTVGEACQKFGSIFRRPQGLFISLKDKGKILDVLKNWPERNIQVIVVTDGERI 183
Query: 188 LGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRA 247
LGLGDLGCQGMGIPVGKLALY+ALGG+RPSACLP+T+DVGTNNE+LL DEFYIGLRQ+RA
Sbjct: 184 LGLGDLGCQGMGIPVGKLALYSALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQKRA 243
Query: 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXX 307
TGQEY+ELL+EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY THLVFNDDIQ
Sbjct: 244 TGQEYSELLNEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYSDTHLVFNDDIQGTASV 303
Query: 308 XXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 367
LAEH FLFLGAGEAGTGIAELIAL +SKQ A VEE+RKKI LVD
Sbjct: 304 VLAGLVSAQKLTNSPLAEHTFLFLGAGEAGTGIAELIALYMSKQMNASVEESRKKIWLVD 363
Query: 368 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM 427
SKGLIV+SRKDSLQ FKKPWAHEHEPV +LL A+K IKPT+LIGSSGVGR+FTKEVIEAM
Sbjct: 364 SKGLIVNSRKDSLQDFKKPWAHEHEPVKDLLGAIKAIKPTVLIGSSGVGRSFTKEVIEAM 423
Query: 428 ASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNA 487
+S NE+PLI+ALSNPT+QSECTAEEAYTWSKGRAIFASGSPFDP EY GKVFV QANNA
Sbjct: 424 SSINERPLIMALSNPTTQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKVFVSTQANNA 483
Query: 488 YIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXX 547
YIFPGFGLGLVISGAIRVHDDMLLAA+EALA QV++EN+EKG+IYP FS+IR
Sbjct: 484 YIFPGFGLGLVISGAIRVHDDMLLAAAEALAGQVSKENYEKGMIYPSFSSIRKISAQIAA 543
Query: 548 XXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
YELG+A RLPRP+++VKCAES MY+P YR YR
Sbjct: 544 NVATKAYELGLAGRLPRPKDIVKCAESSMYSPTYRLYR 581
|
|
| TAIR|locus:2017854 NADP-ME4 "NADP-malic enzyme 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2312 (818.9 bits), Expect = 7.4e-240, P = 7.4e-240
Identities = 434/579 (74%), Positives = 499/579 (86%)
Query: 13 SVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKER 66
S D KSTV GGV+DVYGED ATED +TPW++SVA RDP HNKGLAF+ +ER
Sbjct: 68 SAADIVPKSTVSGGVQDVYGEDAATEDMPITPWSLSVASGYTLLRDPHHNKGLAFSHRER 127
Query: 67 DAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVE 126
DAHYLRGLLPP VISQ LQ KK+M+++RQY+VPLQKY+AMM+L+E NERLFYKLLID+VE
Sbjct: 128 DAHYLRGLLPPTVISQDLQVKKIMHTLRQYQVPLQKYMAMMDLQETNERLFYKLLIDHVE 187
Query: 127 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 186
ELLPV+YTPTVGEACQKYGSIF RPQGL+ISLKEKGKI EVL+NWPE++IQVIVVTDGER
Sbjct: 188 ELLPVIYTPTVGEACQKYGSIFLRPQGLFISLKEKGKIHEVLRNWPEKNIQVIVVTDGER 247
Query: 187 ILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
ILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLP+T+DVGTNNE+LL DEFYIGLRQRR
Sbjct: 248 ILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQRR 307
Query: 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXX 306
ATG+EY+EL+ EFM+AVKQNYGEKV+IQFEDFANHNAF+LLAKYGTTHLVFNDDIQ
Sbjct: 308 ATGEEYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHLVFNDDIQGTAS 367
Query: 307 XXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366
+L++HRFLFLGAGEAGTGIAELIALEISK++ P+EE RK I LV
Sbjct: 368 VVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIPLEEARKNIWLV 427
Query: 367 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 426
DSKGLIVSSRK+S+QHFKKPWAH+HEP+ L+DAVK IKPT+LIG+SGVG+TFT++V+E
Sbjct: 428 DSKGLIVSSRKESIQHFKKPWAHDHEPIRELVDAVKAIKPTVLIGTSGVGQTFTQDVVET 487
Query: 427 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANN 486
MA NEKP+IL+LSNPTSQSECTAEEAYTWS+GRAIFASGSPF P EY GK FVPGQANN
Sbjct: 488 MAKLNEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYEGKTFVPGQANN 547
Query: 487 AYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXX 546
AYIFPGFGLGL++SG IRVHDDMLLAASEALA+++ EE++EKG+IYPPF NIR
Sbjct: 548 AYIFPGFGLGLIMSGTIRVHDDMLLAASEALAEELMEEHYEKGMIYPPFRNIRKISARIA 607
Query: 547 XXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
YELG+ATRLP+P+ L +CAES MY+P YR+YR
Sbjct: 608 AKVAAKAYELGLATRLPQPKELEQCAESSMYSPSYRSYR 646
|
|
| TAIR|locus:2180547 NADP-ME3 "NADP-malic enzyme 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2290 (811.2 bits), Expect = 1.6e-237, P = 1.6e-237
Identities = 434/573 (75%), Positives = 493/573 (86%)
Query: 19 SKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERDAHYLR 72
+ S V GG+ DVYGED AT DQLVTPW SVA RDPR+NKGLAFT+KERDAHY+
Sbjct: 16 NSSGVGGGISDVYGEDSATLDQLVTPWVTSVASGYTLMRDPRYNKGLAFTDKERDAHYIT 75
Query: 73 GLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVV 132
GLLPP V+SQ +QE+K+M+++RQY VPLQ+Y+A+M+L+ERNERLFYKLLIDNVEELLPVV
Sbjct: 76 GLLPPVVLSQDVQERKVMHNLRQYTVPLQRYMALMDLQERNERLFYKLLIDNVEELLPVV 135
Query: 133 YTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGD 192
YTPTVGEACQKYGSI+RRPQGLYISLKEKGKILEVLKNWP+R IQVIVVTDGERILGLGD
Sbjct: 136 YTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPQRGIQVIVVTDGERILGLGD 195
Query: 193 LGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEY 252
LGCQGMGIPVGKL+LYTALGGIRPSACLPIT+DVGTNNE+LL +EFYIGL+Q+RA G+EY
Sbjct: 196 LGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKLLNNEFYIGLKQKRANGEEY 255
Query: 253 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXX 312
AE L EFM AVKQNYGEKVL+QFEDFANH+AFELL+KY ++HLVFNDDIQ
Sbjct: 256 AEFLQEFMCAVKQNYGEKVLVQFEDFANHHAFELLSKYCSSHLVFNDDIQGTASVVLAGL 315
Query: 313 XXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372
+LA+H FLFLGAGEAGTGIAELIAL+ISK+T P++ETRKKI LVDSKGLI
Sbjct: 316 IAAQKVLGKSLADHTFLFLGAGEAGTGIAELIALKISKETGKPIDETRKKIWLVDSKGLI 375
Query: 373 VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 432
VS RK+SLQHFK+PWAH+H+PV LL AV IKPT+LIG+SGVG+TFTKEV+EAMA+ NE
Sbjct: 376 VSERKESLQHFKQPWAHDHKPVKELLAAVNAIKPTVLIGTSGVGKTFTKEVVEAMATLNE 435
Query: 433 KPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPG 492
KPLILALSNPTSQ+ECTAEEAYTW+KGRAIFASGSPFDP +Y+GK F PGQANN YIFPG
Sbjct: 436 KPLILALSNPTSQAECTAEEAYTWTKGRAIFASGSPFDPVQYDGKKFTPGQANNCYIFPG 495
Query: 493 FGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXX 552
GLGL++SGAIRV DDMLLAASEALA QVTEENF GLIYPPF+NIR
Sbjct: 496 LGLGLIMSGAIRVRDDMLLAASEALASQVTEENFANGLIYPPFANIRKISANIAASVGAK 555
Query: 553 XYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
YELG+A+ LPRP++LVK AESCMY+PVYRN+R
Sbjct: 556 TYELGLASNLPRPKDLVKMAESCMYSPVYRNFR 588
|
|
| TAIR|locus:2181980 NADP-ME2 "NADP-malic enzyme 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2279 (807.3 bits), Expect = 2.3e-236, P = 2.3e-236
Identities = 434/574 (75%), Positives = 492/574 (85%)
Query: 18 DSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA------RDPRHNKGLAFTEKERDAHYL 71
D++S V GG+ DVYGED AT DQLVTPW SVA RDPR+NKGLAFT+KERDAHYL
Sbjct: 15 DNRSGVGGGISDVYGEDSATLDQLVTPWVTSVASGYTLMRDPRYNKGLAFTDKERDAHYL 74
Query: 72 RGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPV 131
GLLPP ++SQ +QE+K+M+++RQY VPLQ+Y+A+M+L+ERNERLFYKLLIDNVEELLPV
Sbjct: 75 TGLLPPVILSQDVQERKVMHNLRQYTVPLQRYMALMDLQERNERLFYKLLIDNVEELLPV 134
Query: 132 VYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLG 191
VYTPTVGEACQKYGSIFR+PQGLYISL EKGKILEVLKNWP+R IQVIVVTDGERILGLG
Sbjct: 135 VYTPTVGEACQKYGSIFRKPQGLYISLNEKGKILEVLKNWPQRGIQVIVVTDGERILGLG 194
Query: 192 DLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQE 251
DLGCQGMGIPVGKL+LYTALGGIRPSACLPIT+DVGTNNE+LL DEFYIGL+QRRATGQE
Sbjct: 195 DLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKLLNDEFYIGLKQRRATGQE 254
Query: 252 YAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXX 311
YAE L EFM AVKQNYGEKVL+QFEDFANHNAF+LL+KY +HLVFNDDIQ
Sbjct: 255 YAEFLHEFMCAVKQNYGEKVLVQFEDFANHNAFDLLSKYSDSHLVFNDDIQGTASVVLAG 314
Query: 312 XXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371
LA+H FLFLGAGEAGTGIAELIAL+ISK+T AP+ ETRKKI LVDSKGL
Sbjct: 315 LIAAQKVLGKKLADHTFLFLGAGEAGTGIAELIALKISKETGAPITETRKKIWLVDSKGL 374
Query: 372 IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 431
IVSSRK+SLQHFK+PWAHEH+PV +L+ AV IKPT+LIG+SGVG+TFTKEV+EAMA+ N
Sbjct: 375 IVSSRKESLQHFKQPWAHEHKPVKDLIGAVNAIKPTVLIGTSGVGQTFTKEVVEAMATNN 434
Query: 432 EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFP 491
EKPLILALSNPTSQ+ECTAE+AYTW+KGRAIF SGSPFDP Y+GK ++PGQANN YIFP
Sbjct: 435 EKPLILALSNPTSQAECTAEQAYTWTKGRAIFGSGSPFDPVVYDGKTYLPGQANNCYIFP 494
Query: 492 GFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXX 551
G GLGL++SGAIRV DDMLLAASEALA QVTEE++ GLIYPPFSNIR
Sbjct: 495 GLGLGLIMSGAIRVRDDMLLAASEALAAQVTEEHYANGLIYPPFSNIREISANIAACVAA 554
Query: 552 XXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
Y+LG+A+ LPR ++LVK AES MY+PVYRNYR
Sbjct: 555 KTYDLGLASNLPRAKDLVKFAESSMYSPVYRNYR 588
|
|
| UNIPROTKB|F1P0Y6 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
Identities = 271/546 (49%), Positives = 358/546 (65%)
Query: 40 QLVTPWTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVP 99
QL V RDP NKG+AFT +ER + GLLPP +SQ +Q ++ + +
Sbjct: 17 QLTMKRGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLSQDVQVLTILKNFERLTSD 76
Query: 100 LQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLK 159
L +Y+ +M L++RNE+LFYK+L ++E+ +P+VYTPTVG ACQ YG FRRP+GL+I++
Sbjct: 77 LDRYILLMSLQDRNEKLFYKVLTSDIEKFMPIVYTPTVGLACQHYGLAFRRPRGLFITIH 136
Query: 160 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSAC 219
++G I +LK+WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P C
Sbjct: 137 DRGHIAAMLKSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPYEC 196
Query: 220 LPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 279
LP+ +DVGT+NE LLKD YIGLR +R GQ Y +LLDEFM AV +YG LIQFEDFA
Sbjct: 197 LPVMLDVGTDNEALLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSSYGMNCLIQFEDFA 256
Query: 280 NHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTG 339
N NAF LL KY + FNDDIQ L++H LF GAGEA G
Sbjct: 257 NVNAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALG 316
Query: 340 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399
IA LI + + K+ + +E K+I +VDSKGLIV R SL K +AHEH + NL D
Sbjct: 317 IANLIVMAMKKEGMSK-DEAVKRIWMVDSKGLIVKGRA-SLTEEKSRFAHEHAEMRNLED 374
Query: 400 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG 459
VK IKP++LIG + +G FTK++I+ MA+FN+ P+I ALSNPTS++ECTAE+ Y +++G
Sbjct: 375 IVKDIKPSVLIGVAAIGGAFTKQIIQDMAAFNKNPIIFALSNPTSKAECTAEQCYKYTEG 434
Query: 460 RAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA 518
R IFASGSPFDP NGK PGQ NN+Y+FPG LG++ G + +D+ L +E +A
Sbjct: 435 RGIFASGSPFDPVTLPNGKTLYPGQGNNSYVFPGVALGVISCGLKHIGEDVFLTTAEVIA 494
Query: 519 KQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYT 578
+QV+EEN ++G +YPP I+ Y AT P+P++L S MY+
Sbjct: 495 QQVSEENLQEGRLYPPLVTIQQVSLKIAVRIAEEAYRNNTATTYPQPEDLEAFIRSQMYS 554
Query: 579 PVYRNY 584
Y ++
Sbjct: 555 TDYNSF 560
|
|
| RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 267/534 (50%), Positives = 353/534 (66%)
Query: 49 VARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMME 108
+ RDP NK LAFT +ER + GLLPP +++Q++Q +++ + + +Y+ +M+
Sbjct: 18 LTRDPHLNKDLAFTLEERQQLKIHGLLPPCIVNQEIQVLRVIKNFERLNSDFDRYLLLMD 77
Query: 109 LEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVL 168
L++RNE+LFY +L+ NVE+ +P+VYTPTVG ACQ+Y FR+P+GL+IS+ +KG I VL
Sbjct: 78 LQDRNEKLFYSVLMSNVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVL 137
Query: 169 KNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGT 228
WPE ++ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P CLPIT+DVGT
Sbjct: 138 NAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGT 197
Query: 229 NNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA 288
NE+LLKD YIGLR RR G EY LDEFM A YG LIQFEDFAN NAF LL
Sbjct: 198 ENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANLNAFRLLN 257
Query: 289 KYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEI 348
KY + FNDDIQ L++ LF GAGEA GIA LI + +
Sbjct: 258 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTVLFQGAGEAALGIAHLIVMAM 317
Query: 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 408
K+ + E+ R+KI LVDSKGLIV R SL K+ +AHEHE + NL V+ IKPT
Sbjct: 318 EKEGLSK-EKARQKIWLVDSKGLIVKGRA-SLTEEKEVFAHEHEEMKNLEAIVQKIKPTA 375
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
LIG + +G FT+++++ MA+FNE+P+I ALSNPTS++EC+AEE Y +KGRAIFASGSP
Sbjct: 376 LIGVAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEECYKVTKGRAIFASGSP 435
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
FDP +G+ PGQ NN+Y+FPG LG+V G ++D + L +E +++QV++++ E
Sbjct: 436 FDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHINDSVFLTTAEVISQQVSDKHLE 495
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVY 581
+G +YPP + IR Y+ +AT P PQN + S MY+ Y
Sbjct: 496 EGRLYPPLNTIRDVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNY 549
|
|
| UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 267/534 (50%), Positives = 353/534 (66%)
Query: 49 VARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMME 108
+ RDP NK LAFT +ER + GLLPP +++Q++Q +++ + + +Y+ +M+
Sbjct: 18 LTRDPHLNKDLAFTLEERQQLKIHGLLPPCIVNQEIQVLRVIKNFERLNSDFDRYLLLMD 77
Query: 109 LEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVL 168
L++RNE+LFY +L+ NVE+ +P+VYTPTVG ACQ+Y FR+P+GL+IS+ +KG I VL
Sbjct: 78 LQDRNEKLFYSVLMSNVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVL 137
Query: 169 KNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGT 228
WPE ++ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P CLPIT+DVGT
Sbjct: 138 NAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGT 197
Query: 229 NNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA 288
NE+LLKD YIGLR RR G EY LDEFM A YG LIQFEDFAN NAF LL
Sbjct: 198 ENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANLNAFRLLN 257
Query: 289 KYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEI 348
KY + FNDDIQ L++ LF GAGEA GIA LI + +
Sbjct: 258 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTVLFQGAGEAALGIAHLIVMAM 317
Query: 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 408
K+ + E+ R+KI LVDSKGLIV R SL K+ +AHEHE + NL V+ IKPT
Sbjct: 318 EKEGLSK-EKARQKIWLVDSKGLIVKGRA-SLTEEKEVFAHEHEEMKNLEAIVQKIKPTA 375
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
LIG + +G FT+++++ MA+FNE+P+I ALSNPTS++EC+AEE Y +KGRAIFASGSP
Sbjct: 376 LIGVAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEECYKVTKGRAIFASGSP 435
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
FDP +G+ PGQ NN+Y+FPG LG+V G ++D + L +E +++QV++++ E
Sbjct: 436 FDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHINDSVFLTTAEVISQQVSDKHLE 495
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVY 581
+G +YPP + IR Y+ +AT P PQN + S MY+ Y
Sbjct: 496 EGRLYPPLNTIRDVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNY 549
|
|
| MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
Identities = 267/534 (50%), Positives = 351/534 (65%)
Query: 49 VARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMME 108
+ RDP NK LAFT +ER + GLLPP +ISQ+LQ +++ + + +Y+ +M+
Sbjct: 18 LTRDPHLNKDLAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERLNSDFDRYLLLMD 77
Query: 109 LEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVL 168
L++RNE+LFY +L+ +VE+ +P+VYTPTVG ACQ+Y FR+P+GL+IS+ +KG I VL
Sbjct: 78 LQDRNEKLFYSVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVL 137
Query: 169 KNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGT 228
WPE ++ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P CLPIT+DVGT
Sbjct: 138 NAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGT 197
Query: 229 NNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA 288
NE+LLKD YIGLR RR G EY LDEFM A YG LIQFEDFAN NAF LL
Sbjct: 198 ENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANRNAFRLLN 257
Query: 289 KYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEI 348
KY + FNDDIQ L++ LF GAGEA GIA L+ + +
Sbjct: 258 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTVLFQGAGEAALGIAHLVVMAM 317
Query: 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 408
K+ + E RKKI LVDSKGLIV R SL K+ +AHEHE + NL V+ IKPT
Sbjct: 318 EKEGLSK-ENARKKIWLVDSKGLIVKGRA-SLTEEKEVFAHEHEEMKNLEAIVQKIKPTA 375
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
LIG + +G FT+++++ MA+FNE+P+I ALSNPTS++EC+AE+ Y +KGRAIFASGSP
Sbjct: 376 LIGVAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKVTKGRAIFASGSP 435
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
FDP +G+ PGQ NN+Y+FPG LG+V G + D + L +E +++QV++++ +
Sbjct: 436 FDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTAEVISQQVSDKHLQ 495
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVY 581
+G +YPP + IR Y+ +AT P PQN + S MY+ Y
Sbjct: 496 EGRLYPPLNTIRGVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNY 549
|
|
| ZFIN|ZDB-GENE-040801-147 me2 "malic enzyme 2, NAD(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
Identities = 261/536 (48%), Positives = 353/536 (65%)
Query: 52 DPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEE 111
+PR NKG+AFT KER + GLLP + +Q Q + ++++ PLQKY+ +M ++E
Sbjct: 31 NPRTNKGMAFTLKERQMLGIHGLLPSKIETQDTQAMRFQKNLKKMSDPLQKYIYLMGIQE 90
Query: 112 RNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNW 171
RNERLFY++L++++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+K++G I +L NW
Sbjct: 91 RNERLFYRVLMEDIEALMPIVYTPTVGLACTQYGHIFRRPKGLFISIKDQGHIRSILDNW 150
Query: 172 PERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNE 231
P+ S++ +VVTDGERILGLGDLG GMGIPVGKL LYTA GIRP +CLP+ +DVGT+NE
Sbjct: 151 PDTSVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPESCLPVCIDVGTDNE 210
Query: 232 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG 291
+LL+D FY+GL QRR Q Y +L+DEFM AV YG+ LIQFEDF NHNAF L KY
Sbjct: 211 KLLRDPFYMGLYQRRDRSQRYDDLIDEFMEAVVDQYGQDTLIQFEDFGNHNAFRFLKKYR 270
Query: 292 TTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351
+ FNDDIQ L EH+ LFLGAGEA GIA LI + + +
Sbjct: 271 EKYCTFNDDIQGTASVALAGLLAAQRAVGKPLTEHKVLFLGAGEAALGIANLIVMAMMES 330
Query: 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDAVKVIKPTIL 409
+ + RKKI + D GL+V R +++ + H +P V + LDAV VIKPT +
Sbjct: 331 GMSQAD-ARKKIWMFDKYGLLVKDRAYETDSYQEAFVHP-DPGDVKSFLDAVNVIKPTAI 388
Query: 410 IGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF 469
IG SG GR FT +VI+AM + NE+P+I ALSNPT+++ECTAE+AY+ ++GR +FASGSPF
Sbjct: 389 IGVSGAGRLFTHDVIKAMGNLNERPIIFALSNPTAKAECTAEDAYSLTQGRCLFASGSPF 448
Query: 470 DPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEK 528
P +G++ PGQ NNAYIFPG L +++SG + D + L A++ LA Q+T+E +
Sbjct: 449 APVSLEDGRILTPGQGNNAYIFPGVALAVILSGVRHISDTVFLEAAKTLADQLTDEELSQ 508
Query: 529 GLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
G +YPP SNIR Y G+A R P P + S ++ Y ++
Sbjct: 509 GRLYPPLSNIREVSLQMAIKVVEYVYSKGMAFRYPEPVDKESYVRSVVWNTNYDSF 564
|
|
| UNIPROTKB|E1C7M4 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
Identities = 262/527 (49%), Positives = 349/527 (66%)
Query: 59 LAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFY 118
+AFT +ER + GLLPP +SQ +Q ++ + + L +Y+ +M L++RNE+LFY
Sbjct: 1 MAFTLEERQQLNIHGLLPPCFLSQDVQVLTILKNFERLTSDLDRYILLMSLQDRNEKLFY 60
Query: 119 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQV 178
K+L ++E+ +P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I +LK+WPE I+
Sbjct: 61 KVLTSDIEKFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIAAMLKSWPESVIKA 120
Query: 179 IVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEF 238
IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P CLP+ +DVGT+NE LLKD
Sbjct: 121 IVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPYECLPVMLDVGTDNEALLKDPL 180
Query: 239 YIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN 298
YIGLR +R GQ Y +LLDEFM AV +YG LIQFEDFAN NAF LL KY + FN
Sbjct: 181 YIGLRHKRIRGQAYDDLLDEFMEAVTSSYGMNCLIQFEDFANVNAFRLLHKYRNKYCTFN 240
Query: 299 DDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 358
DDIQ L++H LF GAGEA GIA LI + + K+ + +E
Sbjct: 241 DDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMKKEGMSK-DE 299
Query: 359 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT 418
K+I +VDSKGLIV R SL K +AHEH + NL D VK IKP++LIG + +G
Sbjct: 300 AVKRIWMVDSKGLIVKGRA-SLTEEKSRFAHEHAEMRNLEDIVKDIKPSVLIGVAAIGGA 358
Query: 419 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGK 477
FTK++I+ MA+FN+ P+I ALSNPTS++ECTAE+ Y +++GR IFASGSPFDP NGK
Sbjct: 359 FTKQIIQDMAAFNKNPIIFALSNPTSKAECTAEQCYKYTEGRGIFASGSPFDPVTLPNGK 418
Query: 478 VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537
PGQ NN+Y+FPG LG++ G + +D+ L +E +A+QV+EEN ++G +YPP
Sbjct: 419 TLYPGQGNNSYVFPGVALGVISCGLKHIGEDVFLTTAEVIAQQVSEENLQEGRLYPPLVT 478
Query: 538 IRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
I+ Y AT P+P++L S MY+ Y ++
Sbjct: 479 IQQVSLKIAVRIAEEAYRNNTATTYPQPEDLEAFIRSQMYSTDYNSF 525
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A4SKE9 | MAO1_AERS4 | 1, ., 1, ., 1, ., 3, 8 | 0.4313 | 0.9401 | 0.9751 | yes | no |
| O82191 | MAOP1_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.8166 | 0.9777 | 0.9845 | no | no |
| Q8ZPE8 | MAO1_SALTY | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| P06801 | MAOX_MOUSE | 1, ., 1, ., 1, ., 4, 0 | 0.5262 | 0.9076 | 0.9283 | yes | no |
| B5QTN6 | MAO1_SALEP | 1, ., 1, ., 1, ., 3, 8 | 0.4285 | 0.8974 | 0.9292 | yes | no |
| P28227 | MAOX_ANAPL | 1, ., 1, ., 1, ., 4, 0 | 0.5232 | 0.9128 | 0.9587 | N/A | no |
| P13697 | MAOX_RAT | 1, ., 1, ., 1, ., 4, 0 | 0.5262 | 0.9076 | 0.9283 | yes | no |
| Q29558 | MAOX_PIG | 1, ., 1, ., 1, ., 4, 0 | 0.5187 | 0.9076 | 0.9533 | yes | no |
| B5RAB4 | MAO1_SALG2 | 1, ., 1, ., 1, ., 3, 8 | 0.4285 | 0.8974 | 0.9292 | yes | no |
| P34105 | MAOX_POPTR | 1, ., 1, ., 1, ., 4, 0 | 0.8646 | 1.0 | 0.9898 | yes | no |
| Q9XGZ0 | MAOP3_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.7993 | 0.9692 | 0.9642 | no | no |
| B5FHJ6 | MAO1_SALDC | 1, ., 1, ., 1, ., 3, 8 | 0.4285 | 0.8974 | 0.9292 | yes | no |
| A9MYU8 | MAO1_SALPB | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| Q9LYG3 | MAOP2_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.7979 | 0.9709 | 0.9659 | no | no |
| P22178 | MAOC_FLATR | 1, ., 1, ., 1, ., 4, 0 | 0.7937 | 0.9658 | 0.8719 | N/A | no |
| P43279 | MAOC_ORYSJ | 1, ., 1, ., 1, ., 4, 0 | 0.8148 | 0.9504 | 0.8701 | no | no |
| A7MN74 | MAO1_CROS8 | 1, ., 1, ., 1, ., 3, 8 | 0.4322 | 0.8991 | 0.9293 | yes | no |
| B4TW15 | MAO1_SALSV | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| Q4FRX3 | MAO1_PSYA2 | 1, ., 1, ., 1, ., 3, 8 | 0.4446 | 0.9025 | 0.9428 | yes | no |
| Q57P88 | MAO1_SALCH | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| Q1QC40 | MAO1_PSYCK | 1, ., 1, ., 1, ., 3, 8 | 0.4428 | 0.9025 | 0.9428 | yes | no |
| A0KHR8 | MAO1_AERHH | 1, ., 1, ., 1, ., 3, 8 | 0.4306 | 0.9384 | 0.9734 | yes | no |
| Q83ML6 | MAO1_SHIFL | 1, ., 1, ., 1, ., 3, 8 | 0.4243 | 0.9042 | 0.9362 | yes | no |
| P37222 | MAOC_SOLLC | 1, ., 1, ., 1, ., 4, 0 | 0.8006 | 0.9641 | 0.9842 | N/A | no |
| P37223 | MAOX_MESCR | 1, ., 1, ., 1, ., 4, 0 | 0.7741 | 0.9829 | 0.9829 | N/A | no |
| P51615 | MAOX_VITVI | 1, ., 1, ., 1, ., 4, 0 | 0.8680 | 1.0 | 0.9898 | yes | no |
| P40927 | MAOX_COLLI | 1, ., 1, ., 1, ., 4, 0 | 0.5176 | 0.9128 | 0.9587 | N/A | no |
| A8AGN6 | MAO1_CITK8 | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| Q6TU48 | MAOX_DICDI | 1, ., 1, ., 1, ., 4, 0 | 0.4785 | 0.9059 | 0.9742 | yes | no |
| Q9CA83 | MAOP4_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.7944 | 0.9794 | 0.8869 | yes | no |
| B4T5V6 | MAO1_SALNS | 1, ., 1, ., 1, ., 3, 8 | 0.4285 | 0.8974 | 0.9292 | yes | no |
| P48163 | MAOX_HUMAN | 1, ., 1, ., 1, ., 4, 0 | 0.5224 | 0.9076 | 0.9283 | yes | no |
| P12628 | MAOX_PHAVU | 1, ., 1, ., 1, ., 4, 0 | 0.8377 | 0.9589 | 0.9524 | N/A | no |
| P16243 | MAOC_MAIZE | 1, ., 1, ., 1, ., 4, 0 | 0.7963 | 0.9299 | 0.8553 | N/A | no |
| B4TII8 | MAO1_SALHS | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| Q6FFL8 | MAO1_ACIAD | 1, ., 1, ., 1, ., 3, 8 | 0.4317 | 0.9042 | 0.9346 | yes | no |
| Q5PHY7 | MAO1_SALPA | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| B5F5W5 | MAO1_SALA4 | 1, ., 1, ., 1, ., 3, 8 | 0.4304 | 0.8974 | 0.9292 | yes | no |
| Q5E4J3 | MAO1_VIBF1 | 1, ., 1, ., 1, ., 3, 8 | 0.4335 | 0.9042 | 0.9412 | yes | no |
| P36444 | MAOC_FLAPR | 1, ., 1, ., 1, ., 4, 0 | 0.8158 | 0.9777 | 0.8840 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.998 |
| 4th Layer | 1.1.1.40 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | VVME2 | RecName- Full=Malic enzyme; (591 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00019865001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (961 aa) | • | • | 0.942 | ||||||
 | GSVIVG00009618001 | RecName- Full=L-lactate dehydrogenase; EC=1.1.1.27; (350 aa) | • | • | • | 0.919 | |||||
 | GSVIVG00017898001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa) | • | • | • | 0.917 | |||||
 | GSVIVG00026376001 | hypothetical protein LOC100248878 (320 aa) | • | • | 0.916 | ||||||
 | GSVIVG00028595001 | RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa) | • | • | 0.913 | ||||||
 | GSVIVG00028594001 | RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa) | • | • | 0.913 | ||||||
 | GSVIVG00019169001 | RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa) | • | • | 0.913 | ||||||
 | GSVIVG00026767001 | RecName- Full=Malic enzyme; (605 aa) | • | • | • | 0.912 | |||||
 | GSVIVG00018984001 | RecName- Full=Malic enzyme; (625 aa) | • | • | • | 0.912 | |||||
 | 26N20_30 | RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa) | • | • | 0.910 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 585 | |||
| PLN03129 | 581 | PLN03129, PLN03129, NADP-dependent malic enzyme; P | 0.0 | |
| PRK13529 | 563 | PRK13529, PRK13529, malate dehydrogenase; Provisio | 0.0 | |
| PTZ00317 | 559 | PTZ00317, PTZ00317, NADP-dependent malic enzyme; P | 0.0 | |
| cd05312 | 279 | cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma | 1e-147 | |
| pfam03949 | 255 | pfam03949, Malic_M, Malic enzyme, NAD binding doma | 1e-123 | |
| COG0281 | 432 | COG0281, SfcA, Malic enzyme [Energy production and | 1e-118 | |
| pfam00390 | 182 | pfam00390, malic, Malic enzyme, N-terminal domain | 1e-105 | |
| smart00919 | 231 | smart00919, Malic_M, Malic enzyme, NAD binding dom | 1e-92 | |
| cd00762 | 254 | cd00762, NAD_bind_malic_enz, NAD(P) binding domain | 1e-88 | |
| cd05311 | 226 | cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma | 8e-31 | |
| PRK12862 | 763 | PRK12862, PRK12862, malic enzyme; Reviewed | 1e-18 | |
| PRK07232 | 752 | PRK07232, PRK07232, bifunctional malic enzyme oxid | 7e-18 | |
| PRK12861 | 764 | PRK12861, PRK12861, malic enzyme; Reviewed | 3e-16 | |
| cd05191 | 86 | cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do | 3e-08 |
| >gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Score = 1123 bits (2906), Expect = 0.0
Identities = 423/581 (72%), Positives = 487/581 (83%), Gaps = 5/581 (0%)
Query: 10 DGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWT-----ISVARDPRHNKGLAFTEK 64
+S+ D + + GGVEDVYGED ATE+Q VTPW + RDPR+NKGLAFTE
Sbjct: 1 ASSSLADARRRRSAAGGVEDVYGEDAATEEQPVTPWVRVASGYDLLRDPRYNKGLAFTET 60
Query: 65 ERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124
ERD LRGLLPPAV+SQ+LQ K+ M ++R E PL KY A+M+L+ERNERLFY++LIDN
Sbjct: 61 ERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLIDN 120
Query: 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG 184
+EELLP+VYTPTVGEACQKYGS+FRRP+GLYISLK+KG++L +LKNWPER +QVIVVTDG
Sbjct: 121 IEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDG 180
Query: 185 ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 244
ERILGLGDLG QGMGIPVGKL LYTA GGIRPSA LP+ +DVGTNNE+LL D FYIGLRQ
Sbjct: 181 ERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQ 240
Query: 245 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGT 304
R TG+EY EL+DEFM AVKQ +G KVL+QFEDFAN NAF LL +Y TTHL FNDDIQGT
Sbjct: 241 PRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGT 300
Query: 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364
A+V LAG++AAL+ GG LA+ R LF GAGEAGTGIAELIAL +S+QT EE RK+I
Sbjct: 301 AAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW 360
Query: 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 424
LVDSKGL+ SRKDSLQ FKKP+AH+HEP +LL+AVK IKPT+LIG SGVG TFTKEV+
Sbjct: 361 LVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVL 420
Query: 425 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQA 484
EAMAS NE+P+I ALSNPTS++ECTAEEAYTW+ GRAIFASGSPFDP EYNGK F PGQA
Sbjct: 421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQA 480
Query: 485 NNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISAN 544
NNAYIFPG GLG ++SGAIRV DDMLLAA+EALA QVTEE KG IYPPFS IR ISA+
Sbjct: 481 NNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAH 540
Query: 545 IAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
+AA VAAKAYE G+ATRLPRP++LV+ AESCMY+PVYR YR
Sbjct: 541 VAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581
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Length = 581 |
| >gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 753 bits (1946), Expect = 0.0
Identities = 262/544 (48%), Positives = 363/544 (66%), Gaps = 13/544 (2%)
Query: 51 RDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELE 110
+P NKG AFTE+ER+ L GLLPPAV + + Q ++ + L+K++ + L+
Sbjct: 22 NNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQ 81
Query: 111 ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKN 170
+RNE LFY+LL D++EE++P++YTPTVGEAC+++ I+RRP+GL+IS ++ +I ++L+N
Sbjct: 82 DRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQN 141
Query: 171 WPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN 230
P R I++IVVTDGERILG+GD G GMGIP+GKL+LYTA GGI P+ LP+ +DVGTNN
Sbjct: 142 APNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNN 201
Query: 231 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY 290
EQLL D Y+G R R G+EY E +DEF+ AVK+ + L+QFEDFA NA +L +Y
Sbjct: 202 EQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERY 260
Query: 291 GTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350
FNDDIQGT +V LAG++AALK+ G L++ R +FLGAG AG GIA+ I +
Sbjct: 261 RDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAM-V 319
Query: 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN---------LLDAV 401
+ EE RK+ +VD +GL+ D L F+KP+A + E + + LL+ V
Sbjct: 320 REGLSEEEARKRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVV 378
Query: 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 461
+ +KPT+LIG SG FT+E+++ MA+ E+P+I LSNPTS++E T E+ W+ GRA
Sbjct: 379 RNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRA 438
Query: 462 IFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521
+ A+GSPF P EYNGK + GQ NNAYIFPG GLG++ SGA RV D ML+AA+ ALA V
Sbjct: 439 LVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCV 498
Query: 522 TEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVY 581
+G + PP +IR++S IA VA A E G+A ++L + E M+ P Y
Sbjct: 499 PLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEY 557
Query: 582 RNYR 585
R YR
Sbjct: 558 RPYR 561
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Length = 563 |
| >gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Score = 675 bits (1743), Expect = 0.0
Identities = 265/541 (48%), Positives = 357/541 (65%), Gaps = 10/541 (1%)
Query: 47 ISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAM 106
+ V R+ NKG AFT +ER+ + GLLPP V + + Q ++L + E P+ KY +
Sbjct: 20 VDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFL 79
Query: 107 MELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILE 166
+ + NE LFY LL+ ++ELLP++YTPTVGEACQ Y ++F+R +GLY+S KGKI E
Sbjct: 80 RNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIRE 139
Query: 167 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDV 226
+LKNWP ++ VIV+TDG RILGLGDLG GMGI +GKL+LY A GGI PS LP+ +DV
Sbjct: 140 ILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDV 199
Query: 227 GTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL 286
GTNNE+LL D Y+GLR++R EY ELLDEFM AV + ++QFEDF+N++ F+L
Sbjct: 200 GTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDL 258
Query: 287 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 346
L +Y + FNDDIQGT +V+ AG + ALKL G E R +F GAG A G+A IA
Sbjct: 259 LERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIA- 317
Query: 347 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAV 401
+++ + EE K LVDSKGL+ ++R D L K P+A E + L D V
Sbjct: 318 DLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVV 377
Query: 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 461
+ +KPT L+G SGVG FT+EV++ MAS E+P+I LSNPTS++ECTAE+AY W+ GRA
Sbjct: 378 RFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRA 437
Query: 462 IFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521
I ASGSPF P NGK P Q NN Y+FPG GLG I+ + D+ML+AA+ +LA V
Sbjct: 438 IVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLV 497
Query: 522 TEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQN---LVKCAESCMYT 578
+EE+ +G +YPP +IR+ISA+IA +V +A E+G+A P N L+ + M+
Sbjct: 498 SEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWV 557
Query: 579 P 579
P
Sbjct: 558 P 558
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Length = 559 |
| >gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Score = 426 bits (1098), Expect = e-147
Identities = 165/281 (58%), Positives = 208/281 (74%), Gaps = 4/281 (1%)
Query: 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360
IQGTA+V LAG++AAL++ G L++ R LFLGAG AG GIA+LI + ++ EE R
Sbjct: 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVRE-GLSEEEAR 59
Query: 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRT 418
KKI LVDSKGL+ RKD L FKKP+A + E +LL+ VK +KPT+LIG SGVG
Sbjct: 60 KKIWLVDSKGLLTKDRKD-LTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGA 118
Query: 419 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 478
FT+EV+ AMA NE+P+I ALSNPTS++ECTAE+AY W+ GRA+FASGSPF P EYNGK
Sbjct: 119 FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKT 178
Query: 479 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 538
+VPGQ NNAYIFPG GLG ++SGA + D+M LAA+EALA VT+E +G +YPP SNI
Sbjct: 179 YVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238
Query: 539 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 579
R+ISA IA VA AYE G+ATR P P++L + +S M+ P
Sbjct: 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279
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Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279 |
| >gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
Score = 362 bits (932), Expect = e-123
Identities = 129/257 (50%), Positives = 169/257 (65%), Gaps = 5/257 (1%)
Query: 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360
IQGTA+VVLAG++ ALK+ G L++ + +F GAG AG GIAEL+ + ++ EE R
Sbjct: 1 IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVRE-GLSEEEAR 59
Query: 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN---NLLDAVKVIKPTILIGSSGVGR 417
K I +VD KGL+ R+D L FKKP+A + V L +AVK KP +LIG SGV
Sbjct: 60 KNIWMVDRKGLLTEGRED-LNPFKKPFARKTNEVKGWGTLAEAVKGAKPDVLIGVSGVPG 118
Query: 418 TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGK 477
FT+E++ AMA E+P+I ALSNPT ++E T EEAY W+ GRA+FA+GSPF P E NG+
Sbjct: 119 VFTEEIVRAMAEHTERPIIFALSNPTPKAEITPEEAYKWTAGRALFATGSPFPPVELNGR 178
Query: 478 VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537
P Q NN IFPG GLG + A R+ D+M LAA+EALA+ VTEE +G I PP +
Sbjct: 179 SDYPNQVNNVLIFPGIGLGALDVRARRITDEMFLAAAEALAELVTEEELGEGYIIPPLFD 238
Query: 538 IRKISANIAANVAAKAY 554
IR++S +A VA A
Sbjct: 239 IREVSPRVAVAVAKAAV 255
|
Length = 255 |
| >gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 358 bits (920), Expect = e-118
Identities = 164/508 (32%), Positives = 233/508 (45%), Gaps = 88/508 (17%)
Query: 90 MNSIRQYEVPLQKYVAMMELEE----------RNERLFYKLLIDNVEELLPVVYTPTVGE 139
+ +I Q E + Y +L+ + L Y + + +E LP+ YTP V E
Sbjct: 1 VETIEQAE---RAYEQYEQLKTEALDKHEYLDPGKILIYPTVPLHTQEDLPLAYTPGVAE 57
Query: 140 ACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGM 198
AC+ R+ S +G + V VVTDG +LGLG++G G
Sbjct: 58 ACKAISEDPRKAY----SYTARGNL-------------VAVVTDGTAVLGLGNIGPLAGK 100
Query: 199 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 258
+ GK L+ A GI LPI +DVGTNNE + E
Sbjct: 101 PVMEGKAVLFKAFAGI---DVLPIELDVGTNNE------------------------IIE 133
Query: 259 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKL 318
F+ A++ +G + ++ D A E +Y VF+DD QGTA V LA ++ ALKL
Sbjct: 134 FVKALEPTFG-GINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKL 192
Query: 319 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 378
G L + + + GAG AG IA+L+ A V + I +VD KGL+ R+D
Sbjct: 193 TGKKLKDQKIVINGAGAAGIAIADLL-------VAAGV--KEENIFVVDRKGLLYDGRED 243
Query: 379 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438
L +K +A E + + +LIG SGVG FT+E+++ MA + P+I A
Sbjct: 244 -LTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGVG-AFTEEMVKEMA---KHPIIFA 298
Query: 439 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLV 498
L+NPT E T E+A W G AI A+G P Q NN IFPG G +
Sbjct: 299 LANPT--PEITPEDAKEWGDGAAIVATGRSDY----------PNQVNNVLIFPGIFRGAL 346
Query: 499 ISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 558
A + D+M +AA+EA+A EE + I PP + R IS +A VA A E GV
Sbjct: 347 DVRAKTITDEMKIAAAEAIADLAREEV-LEEYIIPPPFDPRVISR-VAVAVAKAAMEEGV 404
Query: 559 ATRLPRPQNLVKCA-ESCMYTPVYRNYR 585
A R + + A E+ ++ P YR R
Sbjct: 405 ARRPIDDEEAYEQALEARLWKPEYRMKR 432
|
Length = 432 |
| >gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-105
Identities = 112/180 (62%), Positives = 133/180 (73%)
Query: 111 ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKN 170
+NE LFYKLL ++EE LP+VYTPTVGEACQ I+RRP+GLY S+ GKI ++LKN
Sbjct: 2 GKNEVLFYKLLSTHIEEDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILKN 61
Query: 171 WPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN 230
WPE ++VIVVTDGERILGLGDLG GM I GKLALYTA GI PS LPI +DVGTNN
Sbjct: 62 WPEEDVRVIVVTDGERILGLGDLGVAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTNN 121
Query: 231 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY 290
E+LL D Y+GLR +R G+EY E +DEF+ AVK + IQFEDF NAFE+L +Y
Sbjct: 122 EKLLNDPLYLGLRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILERY 181
|
Length = 182 |
| >gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
Score = 283 bits (728), Expect = 1e-92
Identities = 110/258 (42%), Positives = 143/258 (55%), Gaps = 31/258 (12%)
Query: 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360
QGTA VVLAG++ ALK+ G L + R + GAG AG GIA+L+ K R
Sbjct: 1 QQGTAIVVLAGLLNALKITGKKLEDQRIVVNGAGAAGIGIAKLLVAAGVK---------R 51
Query: 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEPVNNLLDAVKVIKPTILIGSSGVGRT 418
K I LVDSKGL+ R+D+L +KKP+A L +AVK +LIG SG G
Sbjct: 52 KNIWLVDSKGLLTKGREDNLNPYKKPFARKTNERETGTLEEAVK--GADVLIGVSGPGGA 109
Query: 419 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 478
FT+E++++MA E+P+I ALSNPT + E TA +AY W AI A+G
Sbjct: 110 FTEEMVKSMA---ERPIIFALSNPTPEIEPTAADAYRW--TAAIVATGRSDY-------- 156
Query: 479 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK--QVTEENFEKGLIYPPFS 536
P Q NN IFPG LG + A R+ D+M LAA+EALA V+EE G I P
Sbjct: 157 --PNQVNNVLIFPGIFLGALDVRARRITDEMKLAAAEALADAVPVSEEELGPGYIIPSPF 214
Query: 537 NIRKISANIAANVAAKAY 554
+ R++SA +A VA A
Sbjct: 215 D-RRVSARVAVAVAKAAI 231
|
Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231 |
| >gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 1e-88
Identities = 129/256 (50%), Positives = 170/256 (66%), Gaps = 5/256 (1%)
Query: 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360
IQGTASV +AG++AALK+ ++EH+ LF GAG A GIA LI + + + EE
Sbjct: 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLI-VXLXVKEGISKEEAC 59
Query: 361 KKICLVDSKGLIVSSRK---DSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGR 417
K+I VD KGL+V +RK + H + +A+ +L DAV+ KP LIG S VG
Sbjct: 60 KRIWXVDRKGLLVKNRKETCPNEYHLAR-FANPERESGDLEDAVEAAKPDFLIGVSRVGG 118
Query: 418 TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGK 477
FT EVI A A NE+P+I ALSNPTS++ECTAEEAYT ++GRAIFASGSPF P E NG
Sbjct: 119 AFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGG 178
Query: 478 VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537
+ PGQ NN YIFPG LG+++ + DD+ L+A+EA+A VTEE+ + G +YPP +
Sbjct: 179 TYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238
Query: 538 IRKISANIAANVAAKA 553
I+++S NIA VA A
Sbjct: 239 IQEVSLNIAVAVAKYA 254
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254 |
| >gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-31
Identities = 86/256 (33%), Positives = 119/256 (46%), Gaps = 35/256 (13%)
Query: 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361
GTA V LAG++ ALKL+G + E + + GAG AG IA L+ A +
Sbjct: 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLL-------LAAGA--KPE 52
Query: 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPT-ILIGSSGVGRTFT 420
I +VDSKG+I R+D L K A E P + +K + IG S G
Sbjct: 53 NIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPG-VVK 111
Query: 421 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA-IFASG-SPFDPFEYNGKV 478
KE+I+ M + P++ AL+NP E EEA + A I A+G S F
Sbjct: 112 KEMIKKM---AKDPIVFALANPV--PEIWPEEA---KEAGADIVATGRSDF--------- 154
Query: 479 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYP-PFSN 537
P Q NN FPG G + A ++ ++M LAA+EA+A EE + I P PF
Sbjct: 155 --PNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD- 211
Query: 538 IRKISANIAANVAAKA 553
++ +A VA A
Sbjct: 212 -PRVVPRVATAVAKAA 226
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226 |
| >gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-18
Identities = 82/282 (29%), Positives = 126/282 (44%), Gaps = 48/282 (17%)
Query: 296 VFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 355
VF+DD GTA +V A ++ LKL+G + + + + GAG A +L+
Sbjct: 164 VFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLL-----VSLGVK 218
Query: 356 VEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV 415
E I + D KG++ R + + +K +A + + L + ++ + +G S
Sbjct: 219 RE----NIWVTDIKGVVYEGRTELMDPWKARYAQKTD-ARTLAEVIE--GADVFLGLSA- 270
Query: 416 GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG-SPFDPFEY 474
E+++ MA +PLI AL+NPT E EEA + AI A+G S +
Sbjct: 271 AGVLKPEMVKKMA---PRPLIFALANPT--PEILPEEARA-VRPDAIIATGRSDY----- 319
Query: 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE------K 528
P Q NN FP G + GA ++++M +AA A+A+ EE +
Sbjct: 320 ------PNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYG 373
Query: 529 G---------LIYPPFSNIRKISANIAANVAAKAYELGVATR 561
G LI PF + R I IA VA A + GVATR
Sbjct: 374 GEDLSFGPDYLIPKPF-DPRLI-LKIAPAVAQAAMDSGVATR 413
|
Length = 763 |
| >gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 7e-18
Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 62/289 (21%)
Query: 296 VFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELI-ALEISKQTKA 354
VF+DD GTA + A ++ AL+L+G + + + + GAG A L+ AL
Sbjct: 156 VFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK----- 210
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 414
++ I + DSKG+I R + + +K +A + L +A++ + +G S
Sbjct: 211 -----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIE--GADVFLGLS- 261
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR--AIFASG-SPFDP 471
T E++++MA + P+I AL+NP E T EEA R AI A+G S +
Sbjct: 262 AAGVLTPEMVKSMA---DNPIIFALANPD--PEITPEEAK---AVRPDAIIATGRSDY-- 311
Query: 472 FEYNGKVFVPGQANNA----YIFPGFGLGLVISGAIRVHDDMLLAASEALA----KQVTE 523
P Q NN YIF G L + GA ++++M LAA A+A ++V++
Sbjct: 312 ---------PNQVNNVLCFPYIFRG---ALDV-GATTINEEMKLAAVRAIAELAREEVSD 358
Query: 524 E----------NFEKGLIYP-PFSNIRKISANIAANVAAKAYELGVATR 561
E +F I P PF + R I IA VA A + GVATR
Sbjct: 359 EVAAAYGGQKLSFGPEYIIPKPF-DPRLIVK-IAPAVAKAAMDSGVATR 405
|
Length = 752 |
| >gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 119/452 (26%), Positives = 182/452 (40%), Gaps = 98/452 (21%)
Query: 129 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 188
L + YTP V AC+ I P + + R V V+T+G +L
Sbjct: 37 LALAYTPGVASACE---EIAADPLNAF--------------RFTSRGNLVGVITNGTAVL 79
Query: 189 GLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
GLG++G PV GK L+ GI D F I + +
Sbjct: 80 GLGNIGALA-SKPVMEGKAVLFKKFAGI---------------------DVFDIEINETD 117
Query: 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHL--VFNDDIQGT 304
+ L + ++ ++ +G I ED F + K VF+DD GT
Sbjct: 118 P------DKLVDIIAGLEPTFGG---INLEDIKAPECFTVERKLRERMKIPVFHDDQHGT 168
Query: 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364
A V A + LK++G ++ E + + GAG A L L++ PVE I
Sbjct: 169 AITVSAAFINGLKVVGKSIKEVKVVTSGAGAAA-----LACLDLLVDLGLPVEN----IW 219
Query: 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 424
+ D +G++ R + K+ +A E + L + + + +G S G E++
Sbjct: 220 VTDIEGVVYRGRTTLMDPDKERFAQETD-ARTLAEVIG--GADVFLGLS-AGGVLKAEML 275
Query: 425 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQA 484
+AMA+ +PLILAL+NPT E E A+ ++ + A+G +Y P Q
Sbjct: 276 KAMAA---RPLILALANPT--PEIFPELAHA-TRDDVVIATGRS----DY------PNQV 319
Query: 485 NNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE---------------KG 529
NN FP G + GA + +M +AA A+A EE + +
Sbjct: 320 NNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQY 379
Query: 530 LIYPPFSNIRKISANIAANVAAKAYELGVATR 561
LI PF ++ IA VA A E GVATR
Sbjct: 380 LIPKPFDP--RLIVRIAPAVAKAAMEGGVATR 409
|
Length = 764 |
| >gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-08
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351
TA+ +A + AA K+ +L + LGAGE G GIA+L+A E K+
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKK 49
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| KOG1257 | 582 | consensus NADP+-dependent malic enzyme [Energy pro | 100.0 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 100.0 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 100.0 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 100.0 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 100.0 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 100.0 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 100.0 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 100.0 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 100.0 | |
| PF00390 | 182 | malic: Malic enzyme, N-terminal domain; InterPro: | 100.0 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 100.0 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.89 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.62 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.28 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.13 | |
| PLN02477 | 410 | glutamate dehydrogenase | 97.08 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.01 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.97 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.97 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.95 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.93 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.83 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 96.83 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.81 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.79 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.68 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 96.58 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.58 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.5 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.47 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.11 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.11 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.05 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.05 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.0 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.96 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.93 | |
| PLN00106 | 323 | malate dehydrogenase | 95.92 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.88 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.68 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.66 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.59 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.55 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.33 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 94.97 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.81 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.72 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.69 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.47 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.46 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.43 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 94.1 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.09 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.0 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 93.88 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 93.54 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.44 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 93.34 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.32 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.28 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 93.25 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 93.22 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.17 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 93.12 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 93.09 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 93.08 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.84 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.77 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 92.72 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.58 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 92.53 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 92.52 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 92.48 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 92.38 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.38 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.23 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 92.17 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 92.1 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 92.03 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.0 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 91.98 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 91.96 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.84 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 91.49 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.45 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 91.4 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 91.21 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 91.12 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.02 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 90.99 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 90.92 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 90.89 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 90.85 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 90.84 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 90.74 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 90.71 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 90.65 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 90.56 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.49 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 90.45 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 90.43 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.25 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 90.25 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 90.25 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 90.19 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 89.82 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 89.59 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.55 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.39 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.31 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 89.14 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 88.86 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 88.76 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 88.72 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 88.69 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 88.64 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.62 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.43 | |
| PRK04346 | 397 | tryptophan synthase subunit beta; Validated | 88.22 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 88.18 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 88.14 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 88.09 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 88.02 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 87.85 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 87.81 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.73 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 87.6 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 87.58 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 87.49 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.48 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.34 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 87.25 | |
| PRK07411 | 390 | hypothetical protein; Validated | 87.23 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 87.18 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.15 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 87.1 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 87.07 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 86.78 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 86.69 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 86.68 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 86.58 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 86.44 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.33 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.25 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.25 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.2 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 86.03 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 85.45 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 85.39 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 85.32 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 85.3 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 85.24 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.19 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.18 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 84.94 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 84.72 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.64 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 84.59 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 84.23 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 84.16 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.98 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 83.82 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 83.24 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 83.2 | |
| PRK02842 | 427 | light-independent protochlorophyllide reductase su | 83.16 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 83.03 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 83.01 | |
| TIGR01285 | 432 | nifN nitrogenase molybdenum-iron cofactor biosynth | 82.9 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 82.59 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.3 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.28 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 82.2 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 82.03 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 81.98 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 81.81 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 81.77 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.72 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.66 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 81.65 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 81.62 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 81.55 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.54 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 81.44 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 81.43 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 81.41 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.15 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 81.07 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 80.96 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 80.86 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 80.75 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 80.74 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 80.73 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 80.72 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 80.06 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 80.06 |
| >KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-216 Score=1701.74 Aligned_cols=539 Identities=66% Similarity=1.062 Sum_probs=534.7
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
.|..+|+||++|||+|||.+||++|||||||||.|.|+|+|+.||+.+|+++++||+||+||++||+|||+|||++|++|
T Consensus 30 ~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rNerLfY~~l~~n 109 (582)
T KOG1257|consen 30 RGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRNERLFYRLLIDN 109 (582)
T ss_pred CChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||||||||||||++|||||+||
T Consensus 110 ie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgK 189 (582)
T KOG1257|consen 110 IEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMGIPVGK 189 (582)
T ss_pred HHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccccCcccceecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++||||||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||.++|||+++||||||+++|||
T Consensus 190 L~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAf 269 (582)
T KOG1257|consen 190 LALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAF 269 (582)
T ss_pred HHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 285 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
++|+|||+++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |+|+|||+++||
T Consensus 270 rlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-Gl~~eeA~kkIw 348 (582)
T KOG1257|consen 270 RLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-GLSEEEARKKIW 348 (582)
T ss_pred HHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-CCCHHHHhccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
|+|++|||+.+|+.+++++|++||+++++..+|+|||+.||||||||+|++||+|||||||+|+++|||||||||||||+
T Consensus 349 lvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~ 428 (582)
T KOG1257|consen 349 LVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPTS 428 (582)
T ss_pred EEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCcc
Confidence 99999999999976799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcc
Q 007904 445 QSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 524 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~ 524 (585)
++||||||||+||+||||||||||||||+|+||+|+||||||+|+|||||||+++|++++|+|+||++||++||+.++++
T Consensus 429 ~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~e 508 (582)
T KOG1257|consen 429 KAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALAEQVSEE 508 (582)
T ss_pred ccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHHHhhCCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCC
Q 007904 525 NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584 (585)
Q Consensus 525 ~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~ 584 (585)
++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+++|+++.||+|+|+++
T Consensus 509 ~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 509 ELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYRNS 568 (582)
T ss_pred HhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999875
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-209 Score=1688.02 Aligned_cols=537 Identities=49% Similarity=0.846 Sum_probs=527.3
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
+|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||++|++|
T Consensus 16 ~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~ 95 (563)
T PRK13529 16 RGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLLSDH 95 (563)
T ss_pred cchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHHHhC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||||||
T Consensus 96 ~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GK 175 (563)
T PRK13529 96 LEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGK 175 (563)
T ss_pred HHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+.+| |+++||||||+++|||
T Consensus 176 l~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af 254 (563)
T PRK13529 176 LSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNAR 254 (563)
T ss_pred HHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 285 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||
T Consensus 255 ~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~~i~ 333 (563)
T PRK13529 255 RILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARKRFF 333 (563)
T ss_pred HHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcE
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 435 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~---------~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPI 435 (585)
+||++|||+++|.+ |+++|++||++.++. .+|+|+|+.+|||||||+|+++|+|||||||+|+++|+|||
T Consensus 334 ~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPI 412 (563)
T PRK13529 334 MVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPI 412 (563)
T ss_pred EEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCE
Confidence 99999999999965 999999999975442 58999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 436 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 436 IFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||++||+
T Consensus 413 IFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~ 492 (563)
T PRK13529 413 IFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAH 492 (563)
T ss_pred EEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007904 516 ALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585 (585)
Q Consensus 516 aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~~ 585 (585)
+||+++++++++++.|||++++||+||.+||.||+++|+++|+|+. +.|+|+.+||+++||+|+|+|++
T Consensus 493 alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 493 ALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 9999999999999999999999999999999999999999999984 67899999999999999999874
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-209 Score=1688.78 Aligned_cols=541 Identities=74% Similarity=1.177 Sum_probs=532.9
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
+|..+|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+++++|
T Consensus 41 ~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~ 120 (581)
T PLN03129 41 SGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLIDN 120 (581)
T ss_pred cchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhhcC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||||
T Consensus 121 ~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GK 200 (581)
T PLN03129 121 IEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGK 200 (581)
T ss_pred HHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+.+|||+++||||||+++|||
T Consensus 201 l~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af 280 (581)
T PLN03129 201 LDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAF 280 (581)
T ss_pred HHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 285 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++.|+|+|||++|||
T Consensus 281 ~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~ 360 (581)
T PLN03129 281 RLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW 360 (581)
T ss_pred HHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998756999999999999
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+||++|||+++|.++|+++|++||++.++..+|+|+|+.+|||||||+|+++|+|||||||+|+++|+|||||||||||+
T Consensus 361 ~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~ 440 (581)
T PLN03129 361 LVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTS 440 (581)
T ss_pred EEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCC
Confidence 99999999999976699999999998777789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcc
Q 007904 445 QSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 524 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~ 524 (585)
+|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++
T Consensus 441 ~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~ 520 (581)
T PLN03129 441 KAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEE 520 (581)
T ss_pred CcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007904 525 NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585 (585)
Q Consensus 525 ~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~~ 585 (585)
++..+.|||++++||+||.+||.||+++|+++|+|+..++|+|+.+||+++||+|+|+|++
T Consensus 521 ~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 521 ELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 9999999999999999999999999999999999987777899999999999999999875
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-207 Score=1671.05 Aligned_cols=535 Identities=49% Similarity=0.845 Sum_probs=523.0
Q ss_pred ccccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhcc
Q 007904 44 PWTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 123 (585)
Q Consensus 44 ~~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~ 123 (585)
.+|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+++++
T Consensus 17 ~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 96 (559)
T PTZ00317 17 ARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYALLLK 96 (559)
T ss_pred CcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchh
Q 007904 124 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 203 (585)
Q Consensus 124 ~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG 203 (585)
|+|||||||||||||+||++||++||+|||||+|++|+|+|+++|+|||.++|++||||||||||||||||++|||||||
T Consensus 97 ~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~G 176 (559)
T PTZ00317 97 YLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIG 176 (559)
T ss_pred CHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH
Q 007904 204 KLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 283 (585)
Q Consensus 204 Kl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a 283 (585)
|++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+|+||||+||+++| |+++||||||+++||
T Consensus 177 Kl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~na 255 (559)
T PTZ00317 177 KLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHC 255 (559)
T ss_pred HHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeE
Q 007904 284 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 363 (585)
Q Consensus 284 f~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i 363 (585)
|++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++||
T Consensus 256 f~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA~~~i 334 (559)
T PTZ00317 256 FDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEALKSF 334 (559)
T ss_pred HHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 599999999999
Q ss_pred EEEcCCCcccCCCccCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 364 CLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 364 ~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~---~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
|+||++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||||||
T Consensus 335 ~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFa 414 (559)
T PTZ00317 335 YLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFP 414 (559)
T ss_pred EEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 9999999999999766999999999973 33 569999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHH
Q 007904 439 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA 518 (585)
Q Consensus 439 LSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA 518 (585)
|||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||
T Consensus 415 LSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA 494 (559)
T PTZ00317 415 LSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLA 494 (559)
T ss_pred CCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCcccC
Q 007904 519 KQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 580 (585)
Q Consensus 519 ~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~--~~~-~~dl~~~i~~~mw~P~ 580 (585)
+++++++++.+.|||++++||+||.+||.||+++|+++|+|+. .++ ++|+.+||+++||+|.
T Consensus 495 ~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 495 TLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred hhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999999999985 343 3689999999999995
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-120 Score=954.48 Aligned_cols=424 Identities=37% Similarity=0.556 Sum_probs=382.2
Q ss_pred cccHHHHHHHHHHHHhcCCC-chhHHHHHHHhHhhhhhhhhhhhcccccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 007904 79 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 157 (585)
Q Consensus 79 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls 157 (585)
++|+| |.+|++.++..+.+ .|++|.|| ++|+.+||.++-.|..|+|||+||||||++|++||+.|+.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57899 99999999999888 99999999 899999999999999999999999999999999998887775
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCC-CcccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccC
Q 007904 158 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 236 (585)
Q Consensus 158 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~D 236 (585)
.++.++++|+||||||||||||||| ..||||||||++|||+||||| +||||||+||+|+
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 3455666999999999999999999 579999999999999999999 9999999999877
Q ss_pred ccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHHH--HHcCCCeeeccCCCchHHHHHHHHHH
Q 007904 237 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA--KYGTTHLVFNDDIQGTASVVLAGVVA 314 (585)
Q Consensus 237 P~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL~--ryr~~~~~FnDDiQGTaaV~lAgll~ 314 (585)
+++||++++++||. |++||++.|.||.+++ |||.+||||||||||||+|+||||||
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999966 6666666677776555 55679999999999999999999999
Q ss_pred HHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc-CCchhchhhcc-ccC
Q 007904 315 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHE 392 (585)
Q Consensus 315 A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-~l~~~k~~fa~-~~~ 392 (585)
|+|++|++|+|+||||+|||+||+||+++|+++ |+. +++||+|||+|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~-----g~~----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAA-----GVK----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHh-----CCC----cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999997 443 2899999999999999975 36777777775 333
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcc
Q 007904 393 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPF 472 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv 472 (585)
...+ .+++ .+||||||+|++ |+||+|+|++|+ ++|||||||||| +|++||||.+|++|++|+||||
T Consensus 260 ~~~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----- 325 (432)
T COG0281 260 ERTL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----- 325 (432)
T ss_pred cccc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC-----
Confidence 3342 3444 569999999998 899999999998 459999999999 9999999999999999999996
Q ss_pred eeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHH
Q 007904 473 EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAK 552 (585)
Q Consensus 473 ~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~ 552 (585)
+++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++.+ .+.|+|+++++|.+|. ||.||+++
T Consensus 326 -----sd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~a 398 (432)
T COG0281 326 -----SDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKA 398 (432)
T ss_pred -----CCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHH
Confidence 5667799999999999999999999999999999999999999987665 7899999999999998 99999999
Q ss_pred HHHcCCCCCCCCc-hhHHHHHHhCCcccCCCCC
Q 007904 553 AYELGVATRLPRP-QNLVKCAESCMYTPVYRNY 584 (585)
Q Consensus 553 A~~~GvA~~~~~~-~dl~~~i~~~mw~P~Y~~~ 584 (585)
|+++|+|+..+.+ +++.++++..+|.|.|.++
T Consensus 399 A~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 399 AMEEGVARRPIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred HHHcCCccCCCCCHHHHHHHHHHHhcCcccccC
Confidence 9999999865554 4699999999999999875
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-111 Score=945.50 Aligned_cols=370 Identities=31% Similarity=0.485 Sum_probs=336.3
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcc-cccchhh
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 204 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 204 (585)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 456999999999999999 889999996 4445556799999999999999999996 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||| + +|+|||| +|| |+|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid---~----~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---V----FDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---c----cccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 4 5555555 577 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 285 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 285 ~lL~ryr~--~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
+||+|||+ +||||||||||||+|+|||||||+|++|++|+|+||||+|||+||+|||++|+. .|++++ |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999976 499864 9
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
||+|||+|||+++|.+.|+++|++||++. +..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999975 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007904 443 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 522 (585)
Q Consensus 443 t~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 522 (585)
| |||+||||++ |+|+|||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 8999999999999999999999999999999999999999999999
Q ss_pred cccc--------------CCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007904 523 EENF--------------EKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 574 (585)
Q Consensus 523 ~~~~--------------~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~ 574 (585)
++++ ....|+|+..+ ++||..||.||+++|+++|+|+. +. +|+.+|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 8753 34455596666 79999999999999999999985 32 566666554
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-110 Score=942.81 Aligned_cols=369 Identities=29% Similarity=0.459 Sum_probs=338.6
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcc-cccchhh
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 204 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 204 (585)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.++|||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 445999999999999999 779998888 5667778999999999999999999996 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCc-eeeeeecCCCchH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 283 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIq~EDf~~~~a 283 (585)
++|||+||||| ++|||+ ||+ || ||||++|+.+| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~----~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIEL----DES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---cccccc----CCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 555555 455 55 88889999888 87 7899999999999
Q ss_pred HHHHHHHcCC--CeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 284 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 284 f~lL~ryr~~--~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
|+||+|||++ ||||||||||||+|+|||||||+|++|++|+|+||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 99999999999999999999999999999999999999999999999999987 39874 7
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
||||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 55799999998 999999999 8999999999998 9999999999
Q ss_pred CCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007904 442 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 442 Pt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
|| |||+|||||+||+| |||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 89999999999999 999998 799999999999999999999999999999999999999999999
Q ss_pred Cccc--------------cCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007904 522 TEEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 574 (585)
Q Consensus 522 ~~~~--------------~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~ 574 (585)
++++ +..++|||+..+ ++||..||.||+++|+++|+|+. + .+|+.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9873 455669997666 89999999999999999999985 3 3467777654
|
|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-109 Score=929.75 Aligned_cols=359 Identities=31% Similarity=0.502 Sum_probs=334.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCc-ccccchhh
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 204 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 204 (585)
.+.|+++|||||+++|++ |+++|+++| ++++|| +.++|||||||||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 456999999999999996 789999999 666655 469999999999999999999 89999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCce-eeeeecCCCchH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNA 283 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~-lIq~EDf~~~~a 283 (585)
++|||+||||| ++||| |||++ +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~----~~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIE----VDEED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccc----cCCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 55555 45552 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 284 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 284 f~lL~ryr~~--~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 3987 68
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
+||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999997 455799999998 999999999 8999999999998 7999999999
Q ss_pred CCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007904 442 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 442 Pt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
|| |||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999998 899999999999999999999999999999999999999999999
Q ss_pred Ccc--------------ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCC
Q 007904 522 TEE--------------NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRL 562 (585)
Q Consensus 522 ~~~--------------~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~ 562 (585)
+++ ++...+|+|+.++ ++|+..||.||+++|+++|+|+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~~ 406 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATRP 406 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccCC
Confidence 876 6888999999999 679999999999999999999853
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-99 Score=769.11 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.0
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc
Q 007904 381 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 458 (585)
Q Consensus 381 ~~~k~~fa~~~~--~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~ 458 (585)
+++|++||++.. +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999765 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCc
Q 007904 459 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 538 (585)
Q Consensus 459 Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~i 538 (585)
|||||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..++|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 007904 539 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 579 (585)
Q Consensus 539 revs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P 579 (585)
|+||..||.||+++|+++|+|+..++++|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987676789999999999998
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-96 Score=735.20 Aligned_cols=252 Identities=54% Similarity=0.898 Sum_probs=229.7
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|++||++||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999986 9999999999999999999999994 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 381 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 381 ~~~k~~fa~~~~~~---~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
+++|++||++..+. .+|+|+|+++|||||||+|+++|+|||||||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007904 458 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537 (585)
Q Consensus 458 ~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ 537 (585)
+|+|||||||||+||+|+||+++||||||+|||||||||++++||++|||+||++||++||++++++++..++|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q 007904 538 IRKISANIAANVAAKAY 554 (585)
Q Consensus 538 irevs~~VA~aVa~~A~ 554 (585)
+|+||.+||.+|+++|+
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-93 Score=714.24 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.1
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999998 499999999999999999999999965 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 381 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 381 ~~~k~~---fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
.++|++ |+++..+..+|+|+|+.+|||||||+|+++|+||||+|++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007904 458 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537 (585)
Q Consensus 458 ~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ 537 (585)
+|||||||||||+||+|+|+++.|+||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007904 538 IRKISANIAANVAAKA 553 (585)
Q Consensus 538 irevs~~VA~aVa~~A 553 (585)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-83 Score=615.80 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.3
Q ss_pred HhhhhhhhhhhhcccccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCccccc
Q 007904 110 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 189 (585)
Q Consensus 110 ~~~Ne~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 189 (585)
|++||+|||+++.+|++|+||||||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCC
Q 007904 190 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 269 (585)
Q Consensus 190 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp 269 (585)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecCCCchHHHHHHHHc
Q 007904 270 KVLIQFEDFANHNAFELLAKYG 291 (585)
Q Consensus 270 ~~lIq~EDf~~~~af~lL~ryr 291 (585)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A .... |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=455.70 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
+||||+|++||+++|+|..|++++++||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3886 679999999999999987668
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 381 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 381 ~~~k~~fa~~~--~~~-~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999998763 222 378899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred cCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007904 458 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537 (585)
Q Consensus 458 ~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ 537 (585)
|..||+|| +++.|+|+||+|||||||||++++++++|||+||++||++||+++++++++.+.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007904 538 IRKISANIAANVAAKA 553 (585)
Q Consensus 538 irevs~~VA~aVa~~A 553 (585)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=85.31 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999764 3 267999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 555557999999875
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0063 Score=66.94 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=102.9
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHH---------------------HHHHc-------CCCeeec-
Q 007904 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVFN- 298 (585)
Q Consensus 248 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~l---------------------L~ryr-------~~~~~Fn- 298 (585)
+-++|+..+++.+ ..+.|+.+| |.+..-...+ ..||+ -.+|+||
T Consensus 107 ~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~v 179 (425)
T PRK05476 107 TLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINV 179 (425)
T ss_pred CHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEec
Confidence 5577877777665 345566555 4444333322 13443 2699998
Q ss_pred ---------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 299 ---------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 299 ---------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
|...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|.+
T Consensus 180 n~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d~d 244 (425)
T PRK05476 180 NDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTEVD 244 (425)
T ss_pred CCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEcCC
Confidence 6678888776666553 346778999999999999999999888652 63 58888864
Q ss_pred CcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 370 GLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 370 GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
- .| ...+. ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 245 p----~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 245 P----IC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred c----hh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 1 11 11111 11113468888875 99999988877788888888885 334665555444
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=72.22 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=81.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.+.-+++.+++--|.+..| .+.+.+++|+|+|..|..++..+.. .|+ .+++++|+.. .+ ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5566777777766666655 4888999999999999999888865 265 5799888741 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 443 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erP-IIFaLSNPt 443 (585)
.....+....-...++.+++.. .|++|-+++.+ ..+++++++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111112367788875 99999987544 478999999875433366 889999997
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0059 Score=61.33 Aligned_cols=130 Identities=21% Similarity=0.235 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44456667788889999999999999999999999999999763 54 678899999988876 3 4332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHh
Q 007904 384 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 454 (585)
Q Consensus 384 -k~~fa~~~~~~~~-------L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~ 454 (585)
...+.++...... =.+.+..++.||||=++. .+..|++..+.+ .-++|.--+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCC-H--HHHHHH
Confidence 2222221111100 013444568999997776 569999999988 5789998888 874 2 456666
Q ss_pred c
Q 007904 455 T 455 (585)
Q Consensus 455 ~ 455 (585)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=63.76 Aligned_cols=186 Identities=22% Similarity=0.233 Sum_probs=128.4
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHHcC----CCeee----------ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----THLVF----------NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ryr~----~~~~F----------nDDiQGTaaV~lA 310 (585)
.+..|-..|...|+.++.+--||..=|-=+|++..-.- -+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 45677888999999999999998655666777653221 25677753 11111 2233458877888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCchhch-hhc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 388 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k~-~fa 388 (585)
++-.+++..|.+|+..||+|.|-|..|.+.|++|.+. |. +|+ +.|++|-|++.. .|+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 8888999999999999999999999999999988653 63 566 899999999875 3543221 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007904 389 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 455 (585)
Q Consensus 389 ~~~------~~--~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~~ 455 (585)
+.. +. .-+-.+.+. .+.||||=+.- ++.+|++.+..+ .-.||.--+| |+ -+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233343 48999996654 679999999986 7889999999 66 344 445554
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=65.18 Aligned_cols=137 Identities=23% Similarity=0.360 Sum_probs=85.8
Q ss_pred chHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc
Q 007904 281 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360 (585)
Q Consensus 281 ~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~ 360 (585)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----GV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----CC------
Confidence 46777767776654433 34456666666555555554 8899999999999999888888652 43
Q ss_pred CeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEe
Q 007904 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 438 (585)
Q Consensus 361 ~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~--erPIIFa 438 (585)
++|+++|+. ..| .......|-.......++.+++.. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 111 111111221111112357777765 8999999887754 66666654322 2347778
Q ss_pred cCCCCC
Q 007904 439 LSNPTS 444 (585)
Q Consensus 439 LSNPt~ 444 (585)
||||-.
T Consensus 272 lavPrd 277 (311)
T cd05213 272 LAVPRD 277 (311)
T ss_pred eCCCCC
Confidence 999863
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.032 Score=61.22 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=87.7
Q ss_pred CCeeec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 293 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 293 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
.+|+|+ |.-.||+--++-+++ |.++..+...+++|+|.|..|.++|..+... |. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----GA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----cC-------E
Confidence 788886 667899977776655 4567789999999999999999999987642 63 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++|.+- .| ...|+ +.-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+.
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887641 11 11111 11112357788865 89999888777788888888775 5557776666
Q ss_pred CCCcCCCCHHHH
Q 007904 442 PTSQSECTAEEA 453 (585)
Q Consensus 442 Pt~~~E~tpeda 453 (585)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 64 55555444
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.038 Score=61.28 Aligned_cols=189 Identities=17% Similarity=0.165 Sum_probs=130.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHHcCC---C-ee------e----ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-LV------F----NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ryr~~---~-~~------F----nDDiQGTaaV~lA 310 (585)
.+..|-..|...|+.++.+.+||..=|--+|++..-.- -+.+.|+.- . .+ - .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 45568888999999999999999888888888743222 267787631 1 11 1 1233457777788
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE-cCCCcccCCCccCCchh-----c
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 384 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~~l~~~-----k 384 (585)
++..+++..|..|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+.. +
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 888999999999999999999999999999999964 363 45555 9999999875 34332 1
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007904 385 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 455 (585)
Q Consensus 385 ~-------~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~~ 455 (585)
. .|... ....-+- +.+-.++.||||=++. .+..|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0001122 2344568999997665 77999999998843 45689999998 77 244 445554
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0032 Score=68.70 Aligned_cols=120 Identities=27% Similarity=0.415 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++++++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666544444444 6888999999999999999888764 264 679988874 121 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 443 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~--erPIIFaLSNPt 443 (585)
....|........++.+++.. .|++|.+++.+ ..+++++++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 111121011112356677764 89999988655 478999999875322 335888999997
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.014 Score=64.06 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=93.8
Q ss_pred CCeeec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 293 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 293 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
.+|+|+ |...||+--++-+++. .++..+...+++|+|+|..|.++|..+... |. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------E
Confidence 688875 6678999988877765 667789999999999999999999887643 63 4
Q ss_pred EEEEcCCCcccCCCccCCchhchhhcccc-CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++|.+ +.+..+|+.. -...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 1222333321 112246788865 89999999888888888888885 5567767777
Q ss_pred CCCcCCCCHHHHhc
Q 007904 442 PTSQSECTAEEAYT 455 (585)
Q Consensus 442 Pt~~~E~tpeda~~ 455 (585)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 7888887654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=65.23 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=94.1
Q ss_pred CCeeec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 293 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 293 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
.+|++| |-..||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 446899888888777 567888999999999999999999999853 264 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++|.+.. +...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-|+.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 888876421 1111111 0112358888875 89999877777788999999986 6678888887
Q ss_pred CCCcCCCCHHHHhcc
Q 007904 442 PTSQSECTAEEAYTW 456 (585)
Q Consensus 442 Pt~~~E~tpeda~~w 456 (585)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 65 77777766554
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.073 Score=59.11 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=96.7
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH--HHHHHHHcC---CC-eee----------ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---TH-LVF----------NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~lL~ryr~---~~-~~F----------nDDiQGTaaV~lA 310 (585)
.+-.|...|.-.|+..+.+.+||+.-|--+|++..-. --+.+.|+. .. -+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 4566788899999999999999999999999876332 226777753 11 233 2333558887888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 386 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~ 386 (585)
++-.+++..|.+|+++||+|.|.|..|.-.|+.|.+. |. +=+-+-|++|-|++.. .++..+..
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~ 276 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLD 276 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHH
Confidence 8889999999999999999999999999999999763 64 3455699999988754 46654443
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.009 Score=57.87 Aligned_cols=91 Identities=22% Similarity=0.343 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 387 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f 387 (585)
..+.+-.++.....|.+.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------ 77 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------ 77 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC------------------
Confidence 333444555556789999999999997 59889888865 252 58888864
Q ss_pred ccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 388 AHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 388 a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
...|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 ------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999988899999775 346788888876
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.081 Score=58.77 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=130.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH---HHHHHcC----CCeeecc---CC-------CchHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVL 309 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---lL~ryr~----~~~~FnD---Di-------QGTaaV~l 309 (585)
.+..|...|.-.||..+.+-.||+.=|-=.|++. ++.. +++.|+. ...++.- .. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556788899999999998889988788888874 3333 5677764 2223211 11 23888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc-
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA- 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa- 388 (585)
.++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|++.. .++..+..+.
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999653 74 5577789999998864 3554332110
Q ss_pred --------------cccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHH
Q 007904 389 --------------HEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 451 (585)
Q Consensus 389 --------------~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpe 451 (585)
..-+... +-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 0100100 1122 23468999997766 57999999999843 34678888888 653 33 44
Q ss_pred HHhc
Q 007904 452 EAYT 455 (585)
Q Consensus 452 da~~ 455 (585)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.012 Score=61.46 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=90.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
..+-+++=.++.-+++..+..|.+.+++|+|+|..|..+|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4455666666677778888899999999999999999999999652 63 588888741 1 111
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcE
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 461 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Gra 461 (585)
..+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|. +.-+|+=+|..- -++..+.|-+ -.-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 110 000011112357777775 89999654 44578999998885 556888776422 3555644433 34477
Q ss_pred EEecCCC
Q 007904 462 IFASGSP 468 (585)
Q Consensus 462 i~AsGSP 468 (585)
+.+-|=|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 7788755
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.14 Score=56.91 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=126.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH---HHHHHcC---CC-eeecc----------CCCchHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFND----------DIQGTASVVL 309 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---lL~ryr~---~~-~~FnD----------DiQGTaaV~l 309 (585)
.+..|-..|...||..+.+..||+.-|-=.|++. ++.. +.+.|+. .. .|+-. --..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556678899999999999999999999999984 3333 5566652 22 22211 1223787778
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCchhch---
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 385 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k~--- 385 (585)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .++..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999998763 63 455 999999999875 4544332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007904 386 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 444 (585)
Q Consensus 386 ------------~fa~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~ 444 (585)
.|+...+... +- +.+-.++.|||+=+.. .+.+|++-.+.+-+ +.-.+|.=-+| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 1211000000 11 1222368999998777 56999999998843 34568888888 773
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0019 Score=59.62 Aligned_cols=102 Identities=25% Similarity=0.432 Sum_probs=66.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 397 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~---~~~~~~L 397 (585)
.++++.|++|+|||.+|-+++..|.. .|. ++|++++|. .+| .......|... .-+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 37999999999999999888887765 375 789999873 222 22222233110 1123456
Q ss_pred HHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 398 LDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g-~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
.+.+.. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 666765 999999887663 7888888743211 249999999974
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=58.95 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=89.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.-||-=+..++-.+++..+..|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-+++..+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4567777788888888889999999999999999999999998763 64 34559999999988653 43
Q ss_pred hhch-hhccccCC------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 382 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 382 ~~k~-~fa~~~~~------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
.... .+.+.... . -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 3221 11111000 0 12223 4445899999777 5779999999988 5889999999 65
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=60.92 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
|+++...++--|.+..|..|++.+++|.|| |+.|--++++|... .|. ++++++++. ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888889999999999999999999 89999999888642 243 679988874 112 323
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKP-LILALSNPTS 444 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~--Ft~evi~~Ma~~~erP-IIFaLSNPt~ 444 (585)
.+.++.. ....+|.+++.. +|++|-+++.+.. ++++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 2333321 123467788876 9999988776432 677655 344 5566899874
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.019 Score=64.72 Aligned_cols=201 Identities=19% Similarity=0.281 Sum_probs=112.6
Q ss_pred chHHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
|--+|+-+++=-|.++.|. +|.+.+|+|+|||..|..++..|.. .|. ++|+++++. ..+ ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 3334454555556666664 5899999999999999888877753 364 679999874 122 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CCc-EEEecCCCCCcCCCCHHHH
Q 007904 382 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPTSQSECTAEEA 453 (585)
Q Consensus 382 ~~k~~fa~---~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~---erP-IIFaLSNPt~~~E~tpeda 453 (585)
.....|-. ......++.+++.. .|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~--- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS--- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc---
Confidence 22222210 01123467788875 99999886544 489999999984321 244 5667999973111110
Q ss_pred hccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHH-cccC--ccccCCCc
Q 007904 454 YTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA-KQVT--EENFEKGL 530 (585)
Q Consensus 454 ~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA-~~v~--~~~~~~~~ 530 (585)
...|+++|===-|-.+...-..-..+-.. .|+.+- +.+. .+.+....
T Consensus 380 -----------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~-~Ae~II~ee~~~F~~w~~~~~ 429 (519)
T PLN00203 380 -----------------------------ELESARVYNVDDLKEVVAANKEDRLRKAM-EAQTIIREESKNFEAWRDSLE 429 (519)
T ss_pred -----------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 00111111111122222221111111111 122221 1111 11344567
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHHc
Q 007904 531 IYPPFSNIRKISANIAANVAAKAYEL 556 (585)
Q Consensus 531 l~P~i~~irevs~~VA~aVa~~A~~~ 556 (585)
+.|-+.++|+-...|..+=.+.+.+.
T Consensus 430 ~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 430 TVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998888888765
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.05 Score=56.91 Aligned_cols=128 Identities=22% Similarity=0.296 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh
Q 007904 307 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 386 (585)
Q Consensus 307 V~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~ 386 (585)
++-+++..+++..+..+...|++|+|+|.+|..++..+.. .| -+++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~----~--------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS----A--------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH----H--------HHH
Confidence 3334566677778888999999999999999999888864 25 2689898851 1 111
Q ss_pred hcccc----CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccC-cE
Q 007904 387 WAHEH----EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RA 461 (585)
Q Consensus 387 fa~~~----~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~G-ra 461 (585)
+++.. -...+|.+.++. .|++|-++ +...++++.++.|. +.-+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 11110 112457777775 99999865 35678999998886 566777565433 2344433322 34 34
Q ss_pred EEecCCC
Q 007904 462 IFASGSP 468 (585)
Q Consensus 462 i~AsGSP 468 (585)
+.++|=|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 4456643
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.032 Score=61.30 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=128.1
Q ss_pred chHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc
Q 007904 281 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360 (585)
Q Consensus 281 ~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~ 360 (585)
..||..=.|.|.+.-. -.|--+|.-|++=-|-++.|. |++.+++|+|||..|..+|.-|... |+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 4566666677753210 123334445555555555554 9999999999999999999888763 76
Q ss_pred CeEEEEcCCCcccCCCccCCchhchhhcccc----CCCCCHHHHhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcE
Q 007904 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPL 435 (585)
Q Consensus 361 ~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~----~~~~~L~e~v~~vkptvLIG~S~-~~g~Ft~evi~~Ma~~~erPI 435 (585)
++|+++.+. ..|. +.+|+.- -....|.+.+.. .||+|-.++ +.-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNRT----~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANRT----LERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcCC----HHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 789988772 2221 2233321 122456677766 899886654 445889988887665444459
Q ss_pred EEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 436 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 436 IFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
||=|+||-.- ++ ..+.-||+++|-==-|-.+.-.-..-..+.. ++|+
T Consensus 270 ivDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae 316 (414)
T COG0373 270 IVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAE 316 (414)
T ss_pred EEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHH
Confidence 9999999831 11 1133455666544444444333222222222 2222
Q ss_pred HH-----HcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcC
Q 007904 516 AL-----AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELG 557 (585)
Q Consensus 516 aL-----A~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~G 557 (585)
++ +.+. +.+..-.+-|.+.++|+-+..|...-.+.|.+.-
T Consensus 317 ~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 317 AIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 1111 1345567889999999888888888888887544
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.13 Score=57.49 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=85.3
Q ss_pred CCeeeccCCCchHHHH-------HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEE
Q 007904 293 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 365 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~-------lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~l 365 (585)
.+|++|-+---|-.+. ++.+=+.+|.++..|...+++|+|.|..|.++|..+... |. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-----GA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 6899986655544433 444455567788999999999999999999999998642 63 4777
Q ss_pred EcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 366 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 366 vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+|++-. +. +.... ..-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 766411 10 11000 11112468888876 99999988888899999999996 555666666553
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.12 Score=54.17 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+.+-+|-.|++..++..+.+++.+++|++|+|- +|-.||.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 446777799999999999999999999999997 99999999865 25 2 68888762
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC---CcCCCCHHHHhc
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAYT 455 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaL-SNPt---~~~E~tpeda~~ 455 (585)
..+|.+.++. .|++|-+.+.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1236666664 99999999989999998875 45566544 3663 112455555543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.043 Score=57.66 Aligned_cols=97 Identities=18% Similarity=0.336 Sum_probs=77.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t---------- 192 (286)
T PRK14175 135 QTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS---------- 192 (286)
T ss_pred CCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc----------
Confidence 3456788999999999999999999999999988 99999999965 25 4577787641
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 --------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 --------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred --------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 257788887 99999999999999998775 34455555543
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.055 Score=49.70 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
.|+.+|++..+..+++.+++|+|+|..|..++..+.+. |. .+++++|++ ..+ .......+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999998888888777542 32 578888874 111 2221222211
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEecC-CCC
Q 007904 390 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 443 (585)
Q Consensus 390 ~--~~~~~~L~e~v~~vkptvLIG~S~~~g------~Ft~evi~~Ma~~~erPIIFaLS-NPt 443 (585)
. .....++.++++. +|++|-+...+- .|.+.. ..+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 0 0123456676655 999997765432 133222 23667888775 444
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.046 Score=58.15 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
|.-|.|+|..|..-. .||+|+|| |..|.-+|..|.. .|+ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 445788898887665 69999999 9999999987764 254 35799999865 1111111322111 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 389 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 389 ~~~--~~~~~L~e~v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+-. ....++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 133467888888 8888866665421 3467888999999999999999999
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.094 Score=51.83 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHHHHh--CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 303 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~--g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -+++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988763 6 3688888651 113
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 455 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~~ 455 (585)
..++..|.. ... +..+... .+.|+++=++. ++.+|++.++.| .-++|..-+| |+.. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 111 2233333 37999995555 679999999999 4678998888 6632 33455554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.038 Score=60.66 Aligned_cols=111 Identities=19% Similarity=0.344 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch
Q 007904 306 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 385 (585)
Q Consensus 306 aV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~ 385 (585)
+|+-+|+=-|.+.. ..+++.|++|+|||.+|-.+|..|.. .|. ++|+++++. ..|...| ..
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~~L---a~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQKI---TS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHH---HH
Confidence 33334443333333 35889999999999999888887754 365 689999884 2221111 11
Q ss_pred hhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EEecCCCC
Q 007904 386 PWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILALSNPT 443 (585)
Q Consensus 386 ~fa-~~~~~~~~L~e~v~~vkptvLIG~S~~~g-~Ft~evi~~Ma~~~erPI-IFaLSNPt 443 (585)
.|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+=||+|-
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 221 011123456777775 999999887664 67866542 4665 46799997
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.16 Score=52.38 Aligned_cols=191 Identities=18% Similarity=0.176 Sum_probs=102.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc-------hhhcc---------
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAH--------- 389 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-------~~fa~--------- 389 (585)
.||.|+|+|..|.+||..+... | .+++++|.+- . .+...+ ..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 5 3689998741 1 111111 01100
Q ss_pred --c-cC---CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEE
Q 007904 390 --E-HE---PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 463 (585)
Q Consensus 390 --~-~~---~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~ 463 (585)
. .. ...++.++++. .|++|=+-...-.+.+++++...+.+....|++ ||.+++ .+.++.+.+.-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccE
Confidence 0 00 13578888876 888885433222356778888877766666663 565544 444544433211113
Q ss_pred ecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCc-cc-CCCCCchhh
Q 007904 464 ASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGL-IY-PPFSNIRKI 541 (585)
Q Consensus 464 AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~-l~-P~i~~irev 541 (585)
....||.|+.... ..- +.....-+++.+ +.+..+...+. ... ++ |..- --|
T Consensus 139 vg~Hf~~p~~~~~---------lve----------vv~~~~t~~~~~-~~~~~~~~~~G-----k~pv~v~~d~p--gfi 191 (287)
T PRK08293 139 LALHFANEIWKNN---------TAE----------IMGHPGTDPEVF-DTVVAFAKAIG-----MVPIVLKKEQP--GYI 191 (287)
T ss_pred EEEcCCCCCCcCC---------eEE----------EeCCCCCCHHHH-HHHHHHHHHcC-----CeEEEecCCCC--CHh
Confidence 3346777754221 112 222233355544 44555554432 222 22 2222 245
Q ss_pred HHHHHHHHHHHHH---HcCCCCCCCCchhHHHHH
Q 007904 542 SANIAANVAAKAY---ELGVATRLPRPQNLVKCA 572 (585)
Q Consensus 542 s~~VA~aVa~~A~---~~GvA~~~~~~~dl~~~i 572 (585)
..++-.++...|. ++|+|+ ++|+....
T Consensus 192 ~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 192 LNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 5566666666554 589885 45665544
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.25 Score=51.24 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~ 381 (585)
.||-=+.-++-.+++..+.+|+..||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 466666777888888899999999999999999999999999763 63 455 999999998875 354
Q ss_pred hhch---------------hhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 382 HFKK---------------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 382 ~~k~---------------~fa~~~~~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
..+. .|....+.. -+-.|.. .++.||||=+.. .+.+|++-+..+-+ +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 3221 110000000 1222322 457999997655 67999999998843 35789999998 87
Q ss_pred CcCCCCHHHHhc
Q 007904 444 SQSECTAEEAYT 455 (585)
Q Consensus 444 ~~~E~tpeda~~ 455 (585)
+ + .+++.+.
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 2445544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.04 Score=57.27 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-hchhhc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-~k~~fa 388 (585)
.|++.+++..+..++.++++|+|||.||..++..|.. .|+ ++|+++|+. ..+.+.+.. .+..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4567777766667888999999999999999888875 376 679999985 222222211 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 007904 389 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 389 ~-~~~~~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 00112345555654 89999887654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.093 Score=50.76 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+.+++.+..+++..|..+++.+++++|+ |..|..++..+.+ .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 777888888888888899999999999997 9888888877764 24 468888764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=55.32 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=71.3
Q ss_pred chHHHHHHHHcCCCeeeccCCCchHHHHHHH--HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh
Q 007904 281 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 358 (585)
Q Consensus 281 ~~af~lL~ryr~~~~~FnDDiQGTaaV~lAg--ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~ee 358 (585)
..||..=.|-|.+.- | |.++|.++. ...+ +.. ..|++.+++|+|||..|--+|+.|.+ .|+
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 345555555554321 1 444444443 3333 333 56999999999999998777776655 375
Q ss_pred hcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCC
Q 007904 359 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 432 (585)
Q Consensus 359 A~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~-e~v~-~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~e 432 (585)
++|+++.+.-- + .+|.. +. +++. ..+.||+|-+ +++.-.++.+.++.. .+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 68999988631 1 22321 10 1111 1358999965 233345677665532 22
Q ss_pred CcEEEecCCCCC
Q 007904 433 KPLILALSNPTS 444 (585)
Q Consensus 433 rPIIFaLSNPt~ 444 (585)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.27 Score=51.77 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++..++..+.+|+..+++++|-|. .|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~------------ 192 (285)
T PRK10792 137 LLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF------------ 192 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC------------
Confidence 345778899999999999999999999999998 99999999864 24 357777664
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
..+|.+.+++ +|++|-+.+.++.|+.++|+ +.-+|+=..
T Consensus 193 ------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888887 99999999999999999997 666776655
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.11 Score=55.98 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=63.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 398 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~~L~ 398 (585)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..+ +......|... ......|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988653 63 48889874 111 11111122110 11123577
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 399 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~-----~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 8999987632 4568999999985 5678887774
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.076 Score=55.10 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=62.3
Q ss_pred CCeeeccCCCchHHHHHHHHHHHHHHhCC--CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 293 THLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~lAgll~A~r~~g~--~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
++.=+|-|. .|++.+++..+. .+++.+++++|||.||-.|+-.|.+ .|. ++|+++++.
T Consensus 99 ~l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt- 158 (282)
T TIGR01809 99 IWKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN- 158 (282)
T ss_pred cEEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC-
Confidence 345567664 356777776663 5889999999999998888777654 376 789999874
Q ss_pred cccCCCccCCchhchhhcccc--CCCC---CHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007904 371 LIVSSRKDSLQHFKKPWAHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEV 423 (585)
Q Consensus 371 Li~~~r~~~l~~~k~~fa~~~--~~~~---~L~e~v~~vkptvLIG~S~~~g~Ft~ev 423 (585)
..|.+.|.+ .|.... .... .+.+++. ++|++|.++..+-.++.+.
T Consensus 159 ---~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 159 ---PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred ---HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 222222221 111100 0111 2323343 4899999988764444443
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.09 Score=57.96 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=74.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhc-CCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~-Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 398 (585)
.||+|+||||+ -.-.|+..+.+.. .+ .-+.|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l----~~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEEL----PISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhC----CCCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4445555554322 34 24789999965 33322111212222222 112 25899
Q ss_pred HHhcccCCcEEEec--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGS--------------------------SGVGRTFT--------KEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLIG~--------------------------S~~~g~Ft--------~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
||+++ +|.+|-. .|+||.|. .++++.|.++|+.-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 8887721 23445443 48999999999999999999998
Q ss_pred cCCCCHHHHhccccCcEEEecC
Q 007904 445 QSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsG 466 (585)
.-+| +-+++++...-+|.+|
T Consensus 147 -di~t-~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEVT-EAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHHH-HHHHHhCCCCcEEEEC
Confidence 2222 2334445333345444
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.22 Score=52.57 Aligned_cols=104 Identities=24% Similarity=0.318 Sum_probs=67.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC--CCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~--~~~~L~e~v~ 402 (585)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+. +....-. ...++.++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~--~~~~~i~~~~~~d~~~~l~ 68 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI--PTAVKIKGFSGEDPTPALE 68 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC--CCCceEEEeCCCCHHHHcC
Confidence 48999999 99999999887542 132 256889997522 11110012110 1000000 1246778887
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 69 ~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 69 G--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred C--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 6 89888666553 21 5578999999999999999999999
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.28 Score=47.74 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=74.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.||+--++-|++ |.|+..|...++|++|-|--|-|+|+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 366666666666 5688999999999999999999999998653 5 367777653
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 382 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 382 ~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
|.+.-=|. +.-+..++.|+++. +|++|-+++..++.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 22111111 21223579999986 99999999988899999999995 5556654442 236666665433
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.078 Score=45.16 Aligned_cols=94 Identities=13% Similarity=0.247 Sum_probs=62.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE-cCCCcccCCCccCCchhchhhccccCCCC-CHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVN-NLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~~l~~~k~~fa~~~~~~~-~L~e~v~~v 404 (585)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+...+..|... -.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 789999999999999888764 65 34678855 553 12233333333211 112 68899996
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
+|++| ++-.+ ..-+++++.+....+..+|.-++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99888 56555 4566788888667788999888886
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.081 Score=52.23 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 578999999999999999999988764 87 799999997
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.2 Score=52.73 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..+.+++..+++++|.| ..|.-+|.+|.. .|. .+.+|+++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~------------- 190 (285)
T PRK14191 136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL------------- 190 (285)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------------
Confidence 3457888899999999999999999999999 999999999965 253 45666442
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 -----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 -----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1236778887 99999999999999999995
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.048 Score=50.99 Aligned_cols=105 Identities=22% Similarity=0.377 Sum_probs=65.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
.||.|+|| |..|..+|-+|+.. |+ -++|.|+|.+ .... +..-+|.+..-+.-++..-..+..+.+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 66 3569999986 2111 11001221111110111111255677776
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- +-+++.+.+.+++...|++-.|||.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998555443 21 2346778888999999999999998
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.16 Score=51.84 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=77.4
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh-ccccCCCCCHHHHhcccC
Q 007904 328 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 328 iv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f-a~~~~~~~~L~e~v~~vk 405 (585)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....++.+...++ ...-....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 579999 99999999887653 42 123679999986411111111122222222 0011113567888987
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecCC
Q 007904 406 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 467 (585)
Q Consensus 406 ptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsGS 467 (585)
.|++|=+.+.++. .-+++.+.|.++|...+++-.|||. .....-+++++ .-.-+|++|.
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9988865544322 3578899999999999999999998 33334445552 2233666664
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.2 Score=45.94 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998763 64 68899874
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.22 Score=51.10 Aligned_cols=128 Identities=23% Similarity=0.312 Sum_probs=88.3
Q ss_pred CCCchHHHHHHHHHHHHHHhCCC-cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc
Q 007904 300 DIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 378 (585)
Q Consensus 300 DiQGTaaV~lAgll~A~r~~g~~-l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 378 (585)
--+-||-=+..++-.+++..+.. +++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|.|++..+
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~G- 73 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDG- 73 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTE-
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCC-
Confidence 34567777888888999997766 9999999999999999999999873 63 44667799988886532
Q ss_pred CCchhch-hhccccCC-CCCHH-----------H--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEecCC-
Q 007904 379 SLQHFKK-PWAHEHEP-VNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN- 441 (585)
Q Consensus 379 ~l~~~k~-~fa~~~~~-~~~L~-----------e--~v~~vkptvLIG~S~~~g~Ft~evi~-~Ma~~~erPIIFaLSN- 441 (585)
|+.... .+...... ...+. + .+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+|
T Consensus 74 -ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~ 149 (244)
T PF00208_consen 74 -LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANG 149 (244)
T ss_dssp -EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSS
T ss_pred -chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcch
Confidence 321110 11111111 11111 1 3455799999988 557899999998 663 24789999999
Q ss_pred CC
Q 007904 442 PT 443 (585)
Q Consensus 442 Pt 443 (585)
|+
T Consensus 150 p~ 151 (244)
T PF00208_consen 150 PL 151 (244)
T ss_dssp SB
T ss_pred hc
Confidence 55
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.7 Score=43.73 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc
Q 007904 306 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 384 (585)
Q Consensus 306 aV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k 384 (585)
-++..|++.-++..|.+++.++|+++|.+. .|.-+|.+|. + +| ..+.++|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~g-------atV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DG-------ATVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CC-------CEEEEeCCCC--------------
Confidence 467889999999999999999999999864 4545555554 3 35 3566776631
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 385 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 385 ~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
.+|.|.+++ +|++|-..+.++.|+.++|+ +.-+|..
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vid 98 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVIN 98 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEE
Confidence 257788987 99999999999999999997 4555553
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.48 Score=50.51 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=68.5
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc-cccCCCCCHHHH
Q 007904 323 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDA 400 (585)
Q Consensus 323 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa-~~~~~~~~L~e~ 400 (585)
++-.||+|.|| |..|..+|..|.. .|+ ...+.|+|.+ .. ++-.-+|.+....+- .......+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34469999999 9999999887753 244 3679999983 21 111111322111100 111111334688
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 887 8988755554322 4568999999999999999999999
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.17 Score=55.71 Aligned_cols=125 Identities=14% Similarity=0.263 Sum_probs=73.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~-~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 398 (585)
.||+|+||||+ -.-.++ ..|.+ ...+ ..+.|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333444 44433 2233 237899999852 12211011111112111 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~----------------------------------Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
||++. +|.+|-.-.+||. .=.++++.|.++|+.-+|+=.|||..
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ 148 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG 148 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH
Confidence 99987 7887744433331 12388899999999999999999983
Q ss_pred cCCCCHHHHhccccCcEEEecC
Q 007904 445 QSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsG 466 (585)
+..+-+++++.-| +|.+|
T Consensus 149 ---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 ---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred ---HHHHHHHHhccCC-EEeeC
Confidence 4444556666444 55544
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.5 Score=46.66 Aligned_cols=153 Identities=10% Similarity=0.170 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeeccC-C--CchHHHHHHHHHHHHHH---------------
Q 007904 257 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-I--QGTASVVLAGVVAALKL--------------- 318 (585)
Q Consensus 257 defv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~FnDD-i--QGTaaV~lAgll~A~r~--------------- 318 (585)
.|++++..+ .|- -+|+.-=.+..| ..+-.--+..+.+.|-- . +..|=-+++.+|+.+|.
T Consensus 59 ~~~l~~~~~-~~l-k~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNE-LGI-KQIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhh-cCc-eEEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 455555543 111 125544333333 33333334678777742 2 34555678888876652
Q ss_pred ----hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC
Q 007904 319 ----IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV 394 (585)
Q Consensus 319 ----~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~ 394 (585)
.|..|.+++|.|+|.|..|..+|+.+..+ .|+ ++|.+|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 13458899999999999999999998543 254 688888742 1 001 1111 123
Q ss_pred CCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 395 NNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 395 ~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
.+|.|+++. .|+++=+. ...++|+++.++.|. +..++.=+|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 579999987 89888542 123577888888885 6678777765
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.67 Score=52.48 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=114.4
Q ss_pred CeeEEEEeeCcccccCCCCC--CcccccchhhHHHHHHhcCCCCCceeeEEeccCCCc----hhcccCccccccccCCCC
Q 007904 175 SIQVIVVTDGERILGLGDLG--CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN----EQLLKDEFYIGLRQRRAT 248 (585)
Q Consensus 175 ~v~viVVTDG~rILGLGDlG--~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnn----e~Ll~DP~YlG~r~~R~~ 248 (585)
+.+|+|=++.+--.|+-|-= ..|..|.-.+ .+| . .| |+|-|.... +.|.++-.++|+-|+--.
T Consensus 30 G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~-~v~-~---~d------iilkV~~P~~~e~~~l~~g~~li~~l~p~~~ 98 (509)
T PRK09424 30 GFEVVVESGAGQLASFDDAAYREAGAEIVDGA-AVW-Q---SD------IILKVNAPSDDEIALLREGATLVSFIWPAQN 98 (509)
T ss_pred CCEEEEeCCCCcCCCCCHHHHHHCCCEEecCc-ccc-c---CC------EEEEeCCCCHHHHHhcCCCCEEEEEeCcccC
Confidence 46777777755555665621 1233332222 233 1 22 444444332 245566677777776322
Q ss_pred hhhhHHHHHHHHHHHHHhcCCceeeeeecCCC-chHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhC-----CC
Q 007904 249 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN-HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIG-----GT 322 (585)
Q Consensus 249 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~-~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g-----~~ 322 (585)
.|.++++.++ .=.+|-+|.+-. .+|. +-+...-+-.|-|=-+|..|+-.-.--..| ..
T Consensus 99 --------~~l~~~l~~~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG~ 162 (509)
T PRK09424 99 --------PELLEKLAAR--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAGK 162 (509)
T ss_pred --------HHHHHHHHHc--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHHHHHhcccCCCceeccCC
Confidence 2333333332 234566776542 1111 012222234455655554443322111111 13
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc---CC------------chhchhh
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL------------QHFKKPW 387 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~---~l------------~~~k~~f 387 (585)
....|++|+|||.+|.+.+..... .| | +++.+|.+ ..|.+ .+ ......|
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccch
Confidence 458999999999999888776654 26 3 47788764 11100 00 0011122
Q ss_pred ccccCCCCCHHHHh-----cc-cCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCH
Q 007904 388 AHEHEPVNNLLDAV-----KV-IKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 450 (585)
Q Consensus 388 a~~~~~~~~L~e~v-----~~-vkptvLIG~S~~~g-----~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tp 450 (585)
++... .++.+.. +. -+.|++|.+++.+| +++++.++.|. +.-+|.=++.+. ..+|++.
T Consensus 227 a~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 227 AKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 22210 1221211 11 14999999999866 67999999996 555666677653 3345553
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.33 Score=50.76 Aligned_cols=125 Identities=14% Similarity=0.229 Sum_probs=74.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~v 404 (585)
||.|+|+|.+|..+|..|+. .|+ ..+|+++|++-=..++-..+|.+.. .+.... -...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 89999999999999998765 265 2579999985221111111121111 111100 011233 34554
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEecCCC
Q 007904 405 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSP 468 (585)
Q Consensus 405 kptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~AsGSP 468 (585)
.|++|=+++.+.. +=+++.+.|.+++..-+|+-.|||.. +...-+++++. -+-+|++|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999977776521 12577888899999999999999983 34444444421 1346676654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.051 Score=54.82 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 287 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 287 L~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
++||..++..|..+. -.+|++.||+++|+|..|.-||..|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877776665421 2567889999999999999999999874 87 789999
Q ss_pred cCCCcccCCCccCCchhchhhccccCCC----CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 007904 367 DSKGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSN 441 (585)
Q Consensus 367 D~~GLi~~~r~~~l~~~k~~fa~~~~~~----~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF-aLSN 441 (585)
|.+= +.. .+|.. |--|-.+.-.. ....+.++...|++.|=... +-++++-+...-+ +.-+|| +.-|
T Consensus 58 D~D~-ve~---sNL~R-q~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQT-PEL---SNLNR-QILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCCc-cCh---hhhcc-ccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCC
Confidence 9862 111 12432 11111111111 12344567778988876533 3466665554332 445776 4557
Q ss_pred CCC
Q 007904 442 PTS 444 (585)
Q Consensus 442 Pt~ 444 (585)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 653
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.62 Score=46.74 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhC---------CCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC
Q 007904 306 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 375 (585)
Q Consensus 306 aV~lAgll~A~r~~g---------~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~ 375 (585)
-+|-.|++.=++..+ .+++.++++++|-+ ..|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 445566666666654 48999999999986 467788887764 25 468899999988765
Q ss_pred CccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 007904 376 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 425 (585)
Q Consensus 376 r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~-Ft~evi~ 425 (585)
+...+...+.+. .....+|.|.+++ +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 533221111000 0111248888987 9999999999998 8999997
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.19 Score=53.00 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=74.5
Q ss_pred HHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeE
Q 007904 284 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 363 (585)
Q Consensus 284 f~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i 363 (585)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 5566777666655543322 578899999999999999999998875 87 789
Q ss_pred EEEcCCCcccCCCc-------cCCchhchhhccc-----cC---------C--CCCHHHHhcccCCcEEEeccCCCCCCC
Q 007904 364 CLVDSKGLIVSSRK-------DSLQHFKKPWAHE-----HE---------P--VNNLLDAVKVIKPTILIGSSGVGRTFT 420 (585)
Q Consensus 364 ~lvD~~GLi~~~r~-------~~l~~~k~~fa~~-----~~---------~--~~~L~e~v~~vkptvLIG~S~~~g~Ft 420 (585)
.++|.+=.=..+-. +++-..|..-|.+ .+ . ..++.+.++. .|++|=++--...=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998733221110 0111112221110 00 1 1245566654 677763332110015
Q ss_pred HHHHHHHHcCCCCcEEEecCC
Q 007904 421 KEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 421 ~evi~~Ma~~~erPIIFaLSN 441 (585)
.-+|-..+.....|.|.+-+.
T Consensus 133 r~~ln~~c~~~~iP~V~~~~~ 153 (287)
T PRK08223 133 RRLVFAACQQRGIPALTAAPL 153 (287)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 566777777777888886443
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.24 Score=51.82 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..+..+++.+++++|||-|+-+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4667788888888999999999999998877666643 376 789999984
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.5 Score=49.13 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=69.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh------------chhhccc--c
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 391 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~------------k~~fa~~--~ 391 (585)
.||.|+|+|..|.+||..++.+ |. ++.++|.. .+..+.+... +.++... .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999999764 64 68888873 1110111100 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc--ccCcEEEecCCC
Q 007904 392 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSP 468 (585)
Q Consensus 392 ~~~~~L~e~v~~vkptvLIG~S~~~g~-Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w--t~Grai~AsGSP 468 (585)
....++.|++++ .|++| .+.+... +.+++.+.+.+..+.-.|+..|--. .+ +.+.-+. ..|+++++ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899987 88888 4444432 4566666666665555666554322 22 3333332 24555554 58
Q ss_pred CCcce
Q 007904 469 FDPFE 473 (585)
Q Consensus 469 f~pv~ 473 (585)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88774
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.24 Score=53.70 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCC-c-------cCCchhchhhccc--
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 390 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~-------~~l~~~k~~fa~~-- 390 (585)
++|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999874 87 78999998732 2111 0 0111111111110
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 391 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 391 ---~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
.+. . .++.+.+++ .|++|.++.-. =++-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 011 1 135556655 78888776532 25667777787778888886
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.28 Score=51.87 Aligned_cols=126 Identities=14% Similarity=0.260 Sum_probs=76.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v 404 (585)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+. .-..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998764 366 3679999974211111111122211 22111 0011344 45666
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecCCC
Q 007904 405 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 468 (585)
Q Consensus 405 kptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsGSP 468 (585)
.|++|=+.+.+ |- +=+++++.|.+++...+|+-.|||. +....-+++++ +-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 99998665553 21 1256788899999999999999998 33444555554 22336666543
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.34 Score=50.46 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 293 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++.=+|-| ..|++.+++..+..+++++++|+|||-+|-+|+..+.. .|. ++|+++++.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45566777 45677888877778888999999998777666655543 375 679999874
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.53 Score=49.78 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=76.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 400 (585)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++... ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 45699999999999999988765 265 24999997521111110012111 1111110 1124565 6
Q ss_pred hcccCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEe
Q 007904 401 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 464 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g--------------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~A 464 (585)
+++ .|++|=+.+.+. -+-+++.+.|.++|+.-+++-.|||.. .....+++++. =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD---CMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH---HHHHHHHHhhCCCcccEEE
Confidence 666 898886665543 123489999999999998888899982 23445555542 134666
Q ss_pred cCC
Q 007904 465 SGS 467 (585)
Q Consensus 465 sGS 467 (585)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 664
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.98 Score=49.35 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc-c-c-
Confidence 34457899999999999999999999999999999999998753 75 578888631 00 0 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEe-cc-------CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIG-SS-------GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG-~S-------~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
......+|.|+++. .|+++= +. ..-++|+++.+..|. +..++.=.|. -++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 00123579998886 887762 11 123799999999996 6778876654 4444444442
Q ss_pred c--ccCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhHHHHHhCCc
Q 007904 456 W--SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAI 503 (585)
Q Consensus 456 w--t~Grai~AsGSPf--~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~ 503 (585)
- ..|+...|.=-=| +|. .+.... ..|..+-|=|+-....++.+
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGKAR 265 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHHHH
Confidence 1 2444322211111 111 111111 13778888777555555433
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.76 Score=48.82 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..|.+++.++|+|+|.| ..|..+|.+|.+. | ..+.+++++ .
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t---- 193 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S---- 193 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C----
Confidence 3466788889999999999999999999996 9999999999763 5 357777653 0
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
.++.|++++ +|++|=+-+.++.+++++++ +.-||.=.|
T Consensus 194 ------------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 ------------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred ------------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999989999988854 556776666
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.53 Score=49.60 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchH-HHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsA-g~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.-++..+.++++.+++++|.|.- |.-+|.+|.. .| ..+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVt~~hs~------------ 191 (285)
T PRK14189 136 LFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AG-------ATVTICHSK------------ 191 (285)
T ss_pred CCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEecCC------------
Confidence 3456788899999999999999999999999988 9999999865 25 345665442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999998886
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.46 Score=47.62 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=34.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999874 87 899999987
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.31 Score=50.88 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..+..+++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 3567777755556788999999999999988877765 376 789999984
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.6 Score=49.55 Aligned_cols=124 Identities=18% Similarity=0.289 Sum_probs=73.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHHh
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 401 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~v 401 (585)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+ ...+.... ...+++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~-~~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISH-SNVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHh-hhhccCCCeEEEECCCH-HHh
Confidence 3699999999999999988654 376 2399999753221111101111 11111111 112456 567
Q ss_pred cccCCcEEEeccCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--Cc
Q 007904 402 KVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GR 460 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~F-------------------t~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Gr 460 (585)
++ .|++|=+.+.++-- -.++++.|.+++..-+++--|||.+ .....+++++. -.
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 66 89998655544321 2478888999998879999999982 22333444432 13
Q ss_pred EEEecC
Q 007904 461 AIFASG 466 (585)
Q Consensus 461 ai~AsG 466 (585)
-+|++|
T Consensus 148 rviGlg 153 (321)
T PTZ00082 148 KVCGMA 153 (321)
T ss_pred hEEEec
Confidence 466666
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.6 Score=46.89 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 303 GTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 303 GTaaV~lAgll~A~r~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
.+|--+++.+|+.+|. .+..|.++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 121 ~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~~ 188 (347)
T PLN02928 121 SCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLAT 188 (347)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEEE
Confidence 4566677777777663 24579999999999999999999998643 75 58888
Q ss_pred cCCCcccCCCccCC--c-hhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 367 DSKGLIVSSRKDSL--Q-HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 367 D~~GLi~~~r~~~l--~-~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
|+.. .......+ + ..-..+........+|.|+++. .|+++-.- ...++|+++.+..|. +..+|.=.
T Consensus 189 dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lINv 261 (347)
T PLN02928 189 RRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVNI 261 (347)
T ss_pred CCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEEC
Confidence 8752 11000000 0 0000011111134589999987 89998652 224799999999995 56677766
Q ss_pred CCCCCcCCCCHHHHhc-c-ccCcEEEe
Q 007904 440 SNPTSQSECTAEEAYT-W-SKGRAIFA 464 (585)
Q Consensus 440 SNPt~~~E~tpeda~~-w-t~Grai~A 464 (585)
|. .++--|+|+- . ..|+.-.|
T Consensus 262 aR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 262 AR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred CC----ccccCHHHHHHHHHcCCeeEE
Confidence 64 4455454442 1 35655433
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.35 Score=51.72 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 578899999999999999999999875 87 7899999974
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.43 Score=51.43 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 367889999999999999999999774 87 789999986
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.94 Score=47.86 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++..++..+.+|...+++++|.|. .|..+|.+|.. .| ..+.+|+++
T Consensus 142 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------ 197 (287)
T PRK14176 142 GLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------ 197 (287)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc------------
Confidence 345678899999999999999999999999998 99999999865 24 346677642
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 198 ------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247788877 99999999999999999886
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.5 Score=48.18 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468899999999999999999999874 87 789999997
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.56 Score=49.32 Aligned_cols=85 Identities=21% Similarity=0.367 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..+.+++..+++++|-+ .-|--+|.++... | ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC------------
Confidence 44567888999999999999999999999999 8888888888642 4 356666653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1358889987 99999999989999999984
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.37 Score=50.71 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=71.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~v~ 402 (585)
.||.|+|+|..|.++|-.++.. |+ + +++++|..--+..++.-++. +...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~-~~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMY-EASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhh-hhhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999987652 65 2 59999983222211100010 000010000 11246766 55
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEecC
Q 007904 403 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 466 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g-~------Ft----~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~AsG 466 (585)
+ .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78877444432 2 1 22 45667788899999999999998 344444555531 12366666
Q ss_pred C
Q 007904 467 S 467 (585)
Q Consensus 467 S 467 (585)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 3
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.93 Score=48.00 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~ 390 (585)
|.+++...... ...+++|+|+|..|..++..+... .++ ++++++++. ..+ .......+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 34444444322 346999999999998888877543 254 689988873 222 11222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHH
Q 007904 391 ----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 452 (585)
Q Consensus 391 ----~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tped 452 (585)
.....+++++++. .|++|-++... ..|+.++++ +.-.|.++.--+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678899975 99999776432 356777765 222444444322 246777765
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.88 Score=43.84 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=73.6
Q ss_pred HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCC
Q 007904 316 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 395 (585)
Q Consensus 316 ~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~ 395 (585)
.+..+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999999753 64 6888888522 110 1111111235
Q ss_pred CHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc-c-ccCcEE
Q 007904 396 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAI 462 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~-w-t~Grai 462 (585)
+|.|+++. .|+++=.- ..-+.|+++.++.|. +.-++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 89887432 224799999999996 5567765554 5555554432 2 345544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.47 Score=48.83 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=64.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch---h-hcc---c--------
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK---P-WAH---E-------- 390 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~---~-fa~---~-------- 390 (585)
+||.|+|+|..|.+||..+..+ | .+++++|++- . .+...+. + +.. .
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIKQ----E---QLESAQQEIASIFEQGVARGKLTEAAR 62 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 5799999999999999988763 5 3588888741 1 1111110 0 000 0
Q ss_pred ------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEe
Q 007904 391 ------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 464 (585)
Q Consensus 391 ------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~A 464 (585)
.....++.+++++ .|++|=+-...-...+++++.+.++.....|++ ||.++ ..+++.-++..-..=+.
T Consensus 63 ~~~~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~ 136 (288)
T PRK09260 63 QAALARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVI 136 (288)
T ss_pred HHHHhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEE
Confidence 0112467777776 788874432221224455666666655554443 33322 34444444433222233
Q ss_pred cCCCCCcc
Q 007904 465 SGSPFDPF 472 (585)
Q Consensus 465 sGSPf~pv 472 (585)
...+|.||
T Consensus 137 g~h~~~Pv 144 (288)
T PRK09260 137 AMHFFNPV 144 (288)
T ss_pred EEecCCCc
Confidence 44566666
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.57 Score=51.98 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=76.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh-cCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~-~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 398 (585)
.||+|+||||+ -+-.|+..+.+. ..++ -+.|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 555555555442 2342 37899999753 3321111111222221 112 25799
Q ss_pred HHhcccCCcEEE---------------------ecc-----CCCCCC--------CHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILI---------------------GSS-----GVGRTF--------TKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLI---------------------G~S-----~~~g~F--------t~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
||++. +|.+| |+- |+||.| -.++++.|.++|+.-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99988 88777 221 333322 368889999999999999999999
Q ss_pred cCCCCHHHHhccccCcEEEecCCCCC
Q 007904 445 QSECTAEEAYTWSKGRAIFASGSPFD 470 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsGSPf~ 470 (585)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4443322111334455544555543
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.54 Score=48.49 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=38.6
Q ss_pred HHHHHHHHHH-hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 309 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 309 lAgll~A~r~-~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..|++++++. .+..+++.+++|+|||.+|-+++..|.. .|+ .+++++++.
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 3456777764 5678999999999999888888777764 365 679999885
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.7 Score=50.81 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=71.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc------CCCCCHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 400 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~------~~~~~L~e~ 400 (585)
||.|+|||+.|.+.+- +..+.....+ +-.+++++|.+- ++.+.+...-..+.... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998887653 1111110111 235899999752 21111111111111110 113578899
Q ss_pred hcccCCcEEEeccCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 007904 401 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---------------g~Ft---------------------~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
++. +|++|=.-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 88877443321 1221 27778888889999999999998
Q ss_pred cCCCCHHHHhccccCcEEEecC-CC
Q 007904 445 QSECTAEEAYTWSKGRAIFASG-SP 468 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsG-SP 468 (585)
..+| +-+++.++ .-++.+| +|
T Consensus 149 -~i~t-~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AELT-WALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHHH-HHHHHhCC-CCEEEECCcH
Confidence 2222 23336665 5577777 44
|
linked to 3D####ucture |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.41 Score=49.94 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 63 58888875
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.8 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..||.|+|+|..|.++|..+..+ | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777764
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.8 Score=46.31 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHH------------------HhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEE
Q 007904 304 TASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 365 (585)
Q Consensus 304 TaaV~lAgll~A~r------------------~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~l 365 (585)
.|=-+++.+|+..| ..|..|.++++.|+|.|..|..+|+.+... |+ ++..
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~ 170 (324)
T COG0111 103 VAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIG 170 (324)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEE
Confidence 34456888888887 567789999999999999999999999764 76 5788
Q ss_pred EcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHH
Q 007904 366 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMA 428 (585)
Q Consensus 366 vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma 428 (585)
+|+. ..+. .. -........+|.|.+.. .|+|.-.- ..-|.++++-+..|.
T Consensus 171 ~d~~----~~~~--~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 171 YDPY----SPRE--RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred ECCC----Cchh--hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 8873 1110 00 00111234679999987 99988542 223789999999994
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.71 E-value=3.1 Score=42.02 Aligned_cols=96 Identities=11% Similarity=0.221 Sum_probs=60.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
.||.|+|+|..|..+|..+.+. |. ...+++++|++. +.....+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999888653 53 125688887641 1121111111 01122466777764
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 78776 44433 45788888887654 458889999774
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.65 E-value=1 Score=47.99 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=69.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc--ccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL--i~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|.|| |..|..+|-.|+. .|+-.|.-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 36633223347999998641 11111112333222332211111456788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .-+++.+.|.+++ +.-||+-.|||.
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888554443 31 1367888899995 999999999998
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.3 Score=46.47 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
..|=-+++.+++..|..|..|.+.++.|+|.|..|--+|+.+... |+ ++..+|+. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 445557899999999889999999999999999999999999653 75 57788853 111 00
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEe---ccC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 454 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG---~S~-----~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~ 454 (585)
......+|.|+++. .|+++= ++. .-++|+++.++.|. +..|++=.|. -+.--|+|+
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~AL 217 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTAL 217 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHHH
Confidence 00123579999876 898872 122 23689999999996 6778886554 444445554
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.92 Score=47.02 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999998653 53 58888863
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.65 Score=48.19 Aligned_cols=119 Identities=19% Similarity=0.334 Sum_probs=72.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-----c----CCCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----H----EPVNN 396 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-----~----~~~~~ 396 (585)
.||.|+|||..|.++|..+.. .|+ + .++++|.+ .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~----~--ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL----G--DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC----e--EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 255 2 79999983 111 11111111110 0 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccC---
Q 007904 397 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 459 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~G--- 459 (585)
. +++++ .|++|=+.+.| | -.-+++++.|.+++...+++-.|||.. ....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d---~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD---AMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHHh-CCCc
Confidence 5 45665 89888333322 2 123577888889999998888899981 2222334444 3
Q ss_pred cEEEecCCCC
Q 007904 460 RAIFASGSPF 469 (585)
Q Consensus 460 rai~AsGSPf 469 (585)
+-+|++|.-.
T Consensus 138 ~~viG~gt~l 147 (307)
T PRK06223 138 NRVIGMAGVL 147 (307)
T ss_pred ccEEEeCCCc
Confidence 5688888544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.48 Score=43.31 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=31.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999876 87 89999999733
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.5 Score=46.32 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.-++..|.+++..+++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~------------ 191 (284)
T PRK14190 136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK------------ 191 (284)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC------------
Confidence 34567888999999999999999999999985 678888888864 24 346666542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|.+.+.++.|++++|+
T Consensus 192 ------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888987 99999999999999999996
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.63 Score=48.94 Aligned_cols=48 Identities=38% Similarity=0.513 Sum_probs=38.8
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 311 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 311 gll~A~r~~g--~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
|++.+++-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|++++|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5677888766 455689999999999999998888764 75 789999883
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.74 Score=50.93 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=72.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc---CC-chhchhhccc--cCCCCCHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL-QHFKKPWAHE--HEPVNNLLD 399 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~---~l-~~~k~~fa~~--~~~~~~L~e 399 (585)
.||.|+|||+.| .+..++..+....++ +-..++|+|.+- +|.+ .+ .........+ -....++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999984 343443333321244 335899999752 2211 01 0000000000 011257888
Q ss_pred HhcccCCcEEEeccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEecCCC
Q 007904 400 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~-------------------------------------Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
+++. +|++|=..+++|. .=.++++.|.++|+.-+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8887 7877754444421 125788889999999999999999
Q ss_pred CCcCCCCHHHHhccccCcEEEecC-CCCC
Q 007904 443 TSQSECTAEEAYTWSKGRAIFASG-SPFD 470 (585)
Q Consensus 443 t~~~E~tpeda~~wt~Grai~AsG-SPf~ 470 (585)
.. +..+-++.++ ..-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCC-CCCEEEECCCHHH
Confidence 82 1122223443 34577777 6643
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.37 Score=51.57 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+|+|+|.-|.-+|..|..+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 578899999999999999999998764 87 789999996
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.94 Score=46.24 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478999999999999999999999875 87 799999997
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.59 E-value=11 Score=41.80 Aligned_cols=179 Identities=23% Similarity=0.233 Sum_probs=120.8
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCch--HHHHHHHHcCC-----Ceee------c----cCCCchHHHH
Q 007904 246 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGTT-----HLVF------N----DDIQGTASVV 308 (585)
Q Consensus 246 R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~lL~ryr~~-----~~~F------n----DDiQGTaaV~ 308 (585)
..+-.|-.+|...|++++.+.-||+.-|-=+|++..- =--+.+.|+.- .++| . +----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 3667788899999999999999999999999997522 12256777531 2222 1 1122233222
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
.-+.-.|++..|.+|+..||.|-|-|.+|.=.|+.+.+. |- +=+-+=|++|-|++.. .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 333338888888889999999999999999888888652 63 5577779999888763 4553333211
Q ss_pred cc----------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007904 389 HE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 444 (585)
Q Consensus 389 ~~----------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~ 444 (585)
++ .+.+.+ |.+-.+..||||=+.. .+.+|++-.+...+. +|.=-+| |+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t 317 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT 317 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC
Confidence 11 011112 3344567899997666 568999988888532 8888888 774
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.1 Score=47.27 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..+.+++..++|++|.+ ..|.-+|.||... |- .+ ...+.+++++
T Consensus 135 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~------------ 194 (286)
T PRK14184 135 GFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSR------------ 194 (286)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCC------------
Confidence 34567888999999999999999999999986 5788888888641 10 00 1345566543
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.++. +|++|+..+.++.|++++|+
T Consensus 195 ------------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 ------------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred ------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358889987 99999999999999999994
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.39 E-value=2 Score=45.42 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..|.+++..+++|+|. |..|.-+|.+|.+. |. .+.++.++
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~------------- 191 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR------------- 191 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------------
Confidence 456778888999999999999999999999 99999999999763 53 34544321
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-.-+.++.+++++++
T Consensus 192 -----------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 -----------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1258888987 99999999999999998854
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.5 Score=46.29 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..+.+++.+++|++|-+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~-------AtVti~hs~------------ 190 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----AN-------ATVDICHIF------------ 190 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 44567888999999999999999999999998 889999999864 24 234555442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 ------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1236778887 99999999999999999997
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.39 Score=45.31 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=51.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch--hhccc---cCC---CCCHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 398 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~--~fa~~---~~~---~~~L~ 398 (585)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .+...+. .|... .+. ..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 799999999999999998763 5 56777777531111 1111111 11110 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 431 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~ 431 (585)
+++++ +|++| +.. |--+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77766 333 2245789999998754
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.5 Score=51.46 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=79.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCc-------cCCchhchhhccc---
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 390 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-------~~l~~~k~~fa~~--- 390 (585)
++|++.||+|+|+|..|.-+|..|+.+ |+ .+|.++|-+=+-..+-. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 678999999999999999999988875 87 89999998633221110 0111122222211
Q ss_pred --cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC----------CCCCcCC
Q 007904 391 --HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS----------NPTSQSE 447 (585)
Q Consensus 391 --~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS----------NPt~~~E 447 (585)
.+ .+ .++.+.+++ .|++|-+..-...-++..|...+..+..|+|++-. +|. .
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~---~ 182 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ---G 182 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---C
Confidence 01 11 246666765 89998555321111345677788888999998754 665 5
Q ss_pred CCHHHHhccccC
Q 007904 448 CTAEEAYTWSKG 459 (585)
Q Consensus 448 ~tpeda~~wt~G 459 (585)
...++.|.+.++
T Consensus 183 ~~~~~~~~~~~~ 194 (679)
T PRK14851 183 MGFDDYFNIGGK 194 (679)
T ss_pred CCHhHhccCCCC
Confidence 778888888777
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.8 Score=44.70 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=76.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
-||+|.|| |..|..+|..|+. .|+-..+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 36999999 9999999988775 254110111379999985411 111100122111112111111257888898
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCcCCCCHHHHhccccC--cEEEec
Q 007904 403 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 465 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~--Ft------------~evi~~Ma~~~-erPIIFaLSNPt~~~E~tpeda~~wt~G--rai~As 465 (585)
+ +|++|=+.+.+.. .| +++.+.|.+++ ..-||+-.|||. ....--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 6 9998855555421 23 56778888886 699999999997 3334444454322 112555
Q ss_pred CCCC
Q 007904 466 GSPF 469 (585)
Q Consensus 466 GSPf 469 (585)
|+=.
T Consensus 153 gt~L 156 (325)
T cd01336 153 LTRL 156 (325)
T ss_pred eehH
Confidence 5433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.5 Score=46.92 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC-C-CCCHH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-P-VNNLL 398 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~-~-~~~L~ 398 (585)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ .. .+|..+ ..+..+-. . ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999874 87 78999999732 22 135442 21211110 0 12466
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCcCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSE 447 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF-aLSNPt~~~E 447 (585)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~ 126 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAM 126 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHH
Confidence 77777788765432 233467666655433 233555 5566665544
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.1 Score=48.32 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=62.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-----------hchhhcc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-----------FKKPWAH 389 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-----------~k~~fa~ 389 (585)
.+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+= |..+ +|+. .|..-+.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq~l~~~~diG~~Ka~~a~ 88 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDT-VDLS---NLHRQVIHSTAGVGQPKAESAR 88 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-Eccc---ccccCcccChhHCCChHHHHHH
Confidence 568899999999999999999998764 87 7899999973 2221 1221 1111111
Q ss_pred c-----cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 390 E-----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 390 ~-----~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+ .+. . .++.+.++. .|++|-++.. .=+..++..++.....|.|++-+
T Consensus 89 ~~l~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 89 EAMLALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred HHHHHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEE
Confidence 0 000 0 123445554 6777766542 22555677777777788887654
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.64 E-value=2.6 Score=48.08 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=102.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHh
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 401 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 401 (585)
.+--++|+|.|..|+|||.-+.. .|+ ++.||+++-+= |.+|..+|=+.-.+|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 55679999999999999998865 387 47889987765 344444455545556543 1222234555
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeee
Q 007904 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 479 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~--erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~ 479 (585)
.. .+++..+|-|+ +.|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 43 47788888665 344566554320
Q ss_pred CcCCCcccccchhhhHHHHHhCC-cccC--HHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007904 480 VPGQANNAYIFPGFGLGLVISGA-IRVH--DDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 556 (585)
Q Consensus 480 ~p~Q~NN~yiFPGiglG~l~~~a-~~It--d~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~ 556 (585)
---.+++.|+.+...+++. +..+ ..+..+++..+.-.+.++.+..+-.||.-.- .+ .+...+|++.|.+.
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 0125678899999999993 3332 2222335556666666666655788886543 22 26667888888888
Q ss_pred CC
Q 007904 557 GV 558 (585)
Q Consensus 557 Gv 558 (585)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 83
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.7 Score=44.31 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..+.+|+.++++++|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~------------- 191 (278)
T PRK14172 137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK------------- 191 (278)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3567888999999999999999999999986 578888888864 24 346667653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 -----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1257788887 99999999999999999997
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=2.7 Score=44.43 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 305 aaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.-+|-.|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK-------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 455677888888899999999999999986 578888888864 24 346677653
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|...+.++.++.++|+
T Consensus 193 ----------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ----------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1247788887 99999999999999999997
|
|
| >PRK04346 tryptophan synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=88.22 E-value=9.8 Score=41.95 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=54.8
Q ss_pred eeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHH---------HHHHHhc-CCceeeeeecCCCchHHHHHH
Q 007904 219 CLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFM---------SAVKQNY-GEKVLIQFEDFANHNAFELLA 288 (585)
Q Consensus 219 ~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv---------~av~~~f-Gp~~lIq~EDf~~~~af~lL~ 288 (585)
.+|.+.+.-..=+++.+||-+. +||+.+..+++ ..+.+.+ |.+..+-.||+....+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~-- 91 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKI-- 91 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHH--
Confidence 3444444444445677777542 45555555543 2355566 4677788888877777754
Q ss_pred HHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEE-eCcchHHHHHHHHHHH
Q 007904 289 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELIAL 346 (585)
Q Consensus 289 ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~-~GAGsAg~GIA~ll~~ 346 (585)
| .++.-++.|. ..|+ .+++. -|||..|+++|-....
T Consensus 92 r-----------------~al~~~l~A~-~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 92 N-----------------NVLGQALLAK-RMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred H-----------------HHHHHHHHHH-HcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 1 1233333333 3343 35666 6999988888776544
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.18 E-value=2.7 Score=47.74 Aligned_cols=212 Identities=16% Similarity=0.225 Sum_probs=105.9
Q ss_pred CeeEEEEeeCcccccCCCCC--CcccccchhhHHHHHHhcCCCCCceeeEEeccCCCc----hhcccCccccccccCCCC
Q 007904 175 SIQVIVVTDGERILGLGDLG--CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN----EQLLKDEFYIGLRQRRAT 248 (585)
Q Consensus 175 ~v~viVVTDG~rILGLGDlG--~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnn----e~Ll~DP~YlG~r~~R~~ 248 (585)
..+|+|=++.+.-.|.-|-= ..|..|.-. ..+| . . .|+|-|.... +.|.++-.++|+-|+--.
T Consensus 29 G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~~~-~---a------diIlkV~~P~~~e~~~l~~g~tli~~l~p~~n 97 (511)
T TIGR00561 29 GFDVLVETGAGAKASFADRAFESAGAGIVDG-TLFW-Q---S------DIILKVNAPSDAEIAELPAGKALVSFIWPAQN 97 (511)
T ss_pred CCEEEEECCCCcCCCcCHHHHHHcCCEEecc-cchh-c---C------CEEEEeCCCCHHHHHhcCCCCEEEEEcCccCC
Confidence 46777777755555666621 113233211 2222 1 1 2455444332 445666777777776432
Q ss_pred hhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeec--cCCCchHHHHHHHHHHHHHHhC-----C
Q 007904 249 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIG-----G 321 (585)
Q Consensus 249 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~Fn--DDiQGTaaV~lAgll~A~r~~g-----~ 321 (585)
. |.++++.++ .-++|-+|.+-. + +|- .+..+|. .-|.|-.+|..|+-.-.-..+| .
T Consensus 98 ----~----~ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi~Aa~~lgr~~~g~~taag 160 (511)
T TIGR00561 98 ----P----ELMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAIIEAAHEFGRFFTGQITAAG 160 (511)
T ss_pred ----H----HHHHHHHHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHHHHHHHhhhhcCCceecCC
Confidence 2 333333332 234566775531 0 111 1222222 3455666665553332222222 1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch------------hchhhcc
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------------FKKPWAH 389 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~------------~k~~fa~ 389 (585)
.....|++|+|+|.+|+..+..+... |. ++.++|.+.-.. .+...+.. ...-|++
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rl-e~a~~lGa~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVK-EQVQSMGAEFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHH-HHHHHcCCeEEecccccccccccccee
Confidence 34568999999999999987777552 52 377777764211 00000100 0011221
Q ss_pred ccCCC------CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHc
Q 007904 390 EHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMAS 429 (585)
Q Consensus 390 ~~~~~------~~L~e~v~~vkptvLIG~S~~~g-----~Ft~evi~~Ma~ 429 (585)
...+. .-+.|.++. .|++|++.-++| +.|+++++.|..
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 11000 114455554 999999984333 589999999973
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.14 E-value=3.3 Score=44.04 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=67.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC--CCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~--~~~~L~e~v~~ 403 (585)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+ + ..+-.-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999887743 366 3679999998 3 222211243322 1111111 11346677877
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+++.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888555543 31 2356778888999999999999998
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.1 Score=46.61 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=40.7
Q ss_pred CeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 294 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 294 ~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+.=||-|- .|++.+++..|... +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDY--------IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 44556563 35667777666654 4699999999999888877754 375 679999884
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.92 Score=44.95 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=68.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLDA 400 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~e~ 400 (585)
||+|+||||+-. ..++...+.+.+.++ ...|+|+|.+ ..|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999854 455555555544553 4689999985 23311111222233322 112 2589999
Q ss_pred hcccCCcEEE---------------------eccC-------CCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007904 401 VKVIKPTILI---------------------GSSG-------VGRTFT--------KEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLI---------------------G~S~-------~~g~Ft--------~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
++. +|.+| |+-+ +||.|. .|+.+.|.++|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 89888 3322 233332 58899999999999999999999
Q ss_pred cCCCC
Q 007904 445 QSECT 449 (585)
Q Consensus 445 ~~E~t 449 (585)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.1 Score=42.53 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.4
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc---cc-c----CCCCCH
Q 007904 327 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 397 (585)
Q Consensus 327 riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa---~~-~----~~~~~L 397 (585)
||.|+| +|..|..+|..+.+. | .+++++|+. .++ +......+. .. . ....+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998753 5 467777763 111 211111110 00 0 011356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 398 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
.|+++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 778875 78776 44433 3457888888654445799999999853
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=87.81 E-value=2.9 Score=40.59 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+.--+|-.|++.-++..+.+++..+++++|.+. .|.-+|.||... |. .+.+++++
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------ 69 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT------------
T ss_pred CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC------------
Confidence 334578888999999999999999999999984 898888888652 42 35555543
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 ------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ------------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777876 99999999999999999987
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.8 Score=45.93 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 305 aaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.-+|-.|++.=++..+.+++..++||+|.+ ..|.-+|.||.+.+.++ | ..+.++.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~-~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKES-N-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccC-C-------CEEEEEeCC--------------
Confidence 456777889999999999999999999986 57888888886532211 2 245555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1348888987 99999999999999999995
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.60 E-value=2 Score=45.93 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=65.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.=. .++-.-+|.+...++-....-..+..+.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998877653 44110001279999985311 1111112333222332211111355677877
Q ss_pred cCCcEEEeccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 404 IKPTILIGSSGV---GR-----------TFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~---~g-----------~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
.|++|=+.+. +| ..=+++.+.+.+++ ...||+-.|||.
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 8988844443 33 12346677888867 699999999998
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=5.9 Score=43.48 Aligned_cols=144 Identities=14% Similarity=0.121 Sum_probs=89.3
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcchHHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEI 348 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~~--------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~ 348 (585)
..+.+.|-.--. .|=-+++-+|+.+|-. +..|.+++|.|+|.|..|..+|+.+...
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~f- 214 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPF- 214 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhC-
Confidence 456666653322 3334677778776621 3458899999999999999999998753
Q ss_pred HhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHH
Q 007904 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 424 (585)
Q Consensus 349 ~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi 424 (585)
|+ +++.+|+...- . + . ...+ ......+|.|+++. .|+++=.-- .-++|+++.+
T Consensus 215 ----G~-------~V~~~dr~~~~---~-~-~---~~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l 271 (385)
T PRK07574 215 ----DV-------KLHYTDRHRLP---E-E-V---EQEL--GLTYHVSFDSLVSV--CDVVTIHCPLHPETEHLFDADVL 271 (385)
T ss_pred ----CC-------EEEEECCCCCc---h-h-h---Hhhc--CceecCCHHHHhhc--CCEEEEcCCCCHHHHHHhCHHHH
Confidence 65 57888875320 0 0 0 0011 11113579999987 898873321 1368999999
Q ss_pred HHHHcCCCCcEEEecCCCCCcCCCCHHHHhc--cccCcEEEecC
Q 007904 425 EAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASG 466 (585)
Q Consensus 425 ~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~--wt~Grai~AsG 466 (585)
..|. +..++.=.|. .++.-++|+. ...|+.-.|..
T Consensus 272 ~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 272 SRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred hcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9996 5667776654 4454454442 13566544443
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.5 Score=47.80 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=62.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCc--------cCCchhchhhccc--
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 390 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~fa~~-- 390 (585)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+= |..+.- +++-..|..-+++
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDV-VDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-ecCcccccccccChhcCCChHHHHHHHHH
Confidence 678899999999999999999999875 87 7899999862 221110 0111111111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 391 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 391 ---~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
.+ .. .++.+.++. .|++|-++.-. =++-++-.++..+..|.|++-
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDNF--ATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 00 01 134455554 78888765422 245567777777778887753
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.8 Score=45.87 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..+.+++.++|+|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~---- 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR---- 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC----
Confidence 35667888888889999999999999999 999999999999853 53 46666432 11
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 424 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi 424 (585)
+|.|+++. .|++|-+-+.++.++++++
T Consensus 194 -------------~l~e~~~~--ADIVIsavg~~~~v~~~~l 220 (296)
T PRK14188 194 -------------DLPAVCRR--ADILVAAVGRPEMVKGDWI 220 (296)
T ss_pred -------------CHHHHHhc--CCEEEEecCChhhcchhee
Confidence 36788886 8999988888877777663
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.34 E-value=3.5 Score=43.77 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.-++..+.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~------------ 193 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA------------ 193 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC------------
Confidence 34567888889999999999999999999986 578888888864 24 346666653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347778887 99999999999999999997
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=87.25 E-value=3.6 Score=43.82 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=66.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~ 403 (585)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+.. ...+-. ....++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 255 26799999876 222111243322 101101 011246778887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .=+++.+.+.+++..-||+-.|||.
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 89887555543 21 2246777888999999999999998
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.3 Score=48.20 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=62.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-----------hchhhcc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-----------FKKPWAH 389 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-----------~k~~fa~ 389 (585)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+ .|..+ +|+. .|..-|.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D-~ve~s---NL~RQ~l~~~~dvG~~Ka~~a~ 98 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD-VVDSS---NLQRQVIHGTSWVGKPKIESAK 98 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccCcCcccChHHCCCcHHHHHH
Confidence 578899999999999999999999875 87 899999987 22221 1221 1111111
Q ss_pred c-----cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 390 E-----HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 390 ~-----~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
+ .+ .. .+..+.++. .|++|-+.... =+..+|..++.....|.|++
T Consensus 99 ~~l~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 99 NRILEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDNF--PTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHHHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 0 00 01 123445554 77777765532 26677777777777888764
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=87.18 E-value=3.4 Score=43.95 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..|.+|+.+++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 44567788889999999999999999999986 568888888864 24 357777653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347788887 99999999999999999998
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=3.6 Score=43.72 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..|.+++.++++++|.+ ..|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 45567888889999999999999999999986 578888888864 2321 01345555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-+.+.++.|+.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999998
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=87.10 E-value=0.68 Score=46.33 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|..|..||..|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999764 87 789999986
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.51 Score=52.50 Aligned_cols=124 Identities=18% Similarity=0.347 Sum_probs=81.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 397 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L 397 (585)
+..||+|+||||. .-.+++...+.+.+.++. +.|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 4579999999998 567788877776667753 789999974 44422111111222222 122 2589
Q ss_pred HHHhcccCCcEEE---------------------ec-----cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 007904 398 LDAVKVIKPTILI---------------------GS-----SGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 398 ~e~v~~vkptvLI---------------------G~-----S~~~g~Ft--------~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.||++. +|.+| |+ .++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 77766 11 23334332 48999999999999999999999
Q ss_pred CcCCCCHHHHhccccC-cEE
Q 007904 444 SQSECTAEEAYTWSKG-RAI 462 (585)
Q Consensus 444 ~~~E~tpeda~~wt~G-rai 462 (585)
+++|- -+++|+.+ +.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77774 34555544 444
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=86.78 E-value=5.2 Score=43.84 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=100.1
Q ss_pred cCCCeeeccCC---CchHHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcchHHHHHHHHHHH
Q 007904 291 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 291 r~~~~~FnDDi---QGTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
+..+.+.|--- ..+|=-+++-+|+.+|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 35677777532 223444577777766532 345889999999999999999999865
Q ss_pred HHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEec----
Q 007904 347 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 412 (585)
Q Consensus 347 ~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~--------~--~~~~~~L~e~v~~vkptvLIG~---- 412 (585)
+| |+ +++.+|+..- . .+......+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 53 64 6888887421 0 01100001100 0 0112479999987 9998863
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc-c-ccCcEEEecCC-CC--CcceeCCeeeCcCCCccc
Q 007904 413 SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGS-PF--DPFEYNGKVFVPGQANNA 487 (585)
Q Consensus 413 S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~-w-t~Grai~AsGS-Pf--~pv~~~G~~~~p~Q~NN~ 487 (585)
...-|.|+++.++.|. +.-++.=.| +.++-=|+|+. + ..|+. .+.|- =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPM-FRVGLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCe-eEEEEeCCCCCCC-Ccc---hHhhCCCE
Confidence 2224799999999995 555666554 45555554442 2 24553 32221 01 111 010 11245688
Q ss_pred ccchhhhH
Q 007904 488 YIFPGFGL 495 (585)
Q Consensus 488 yiFPGigl 495 (585)
.+-|=++-
T Consensus 316 ilTPHiag 323 (386)
T PLN02306 316 VVVPHIAS 323 (386)
T ss_pred EECCcccc
Confidence 88888763
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.6 Score=43.46 Aligned_cols=118 Identities=12% Similarity=0.173 Sum_probs=68.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+.+|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 357899999999999998888652 320 12346666542 0 111222222221 1123567888875
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc-CcEEEecC
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 466 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~-Grai~AsG 466 (585)
.|++| ++.++. .-+++++.++.+.+..+|+.++.-. +.+..-+|.. +..++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 78777 445454 4588999888654445777777655 3444544443 33455555
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.68 E-value=3.6 Score=43.84 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=66.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. ..+..-+|.+...+|.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999988887764 255100011279999985322 111111233322233221011134567787
Q ss_pred ccCCcEEEeccCC---CCCCC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGV---GRTFT------------KEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~---~g~Ft------------~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
+ .|++|=+.+. +| .| +++...+.+++ +.-||+-.|||.
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 7 8998855444 33 23 46777888899 499999999998
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=86.58 E-value=2.2 Score=44.49 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=63.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc-
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v- 404 (585)
+|.|+|.|..|..+|..|.+. | .++.++|+. .. .... ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~----l~~~g~~~~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKA----MKEDRTTGVANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHH----HHHcCCcccCCHHHHHhhcC
Confidence 699999999999999988763 5 356777763 11 1111 2111 11234666666543
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCCcCCCCHH
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTSQSECTAE 451 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~~~E~tpe 451 (585)
++|++|= +.+.+ ..+++++.++.+- +..||+-+||.. ++-+-+
T Consensus 59 ~~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 59 APRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 5888874 44444 7899999887654 568999999865 444444
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.44 E-value=6.7 Score=41.88 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=97.5
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHH-------------------------hCCCcccceEEEeCcchHHHHHHHH
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKL-------------------------IGGTLAEHRFLFLGAGEAGTGIAEL 343 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~-------------------------~g~~l~d~riv~~GAGsAg~GIA~l 343 (585)
..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 4566666321 22344467777777664 2456899999999999999999999
Q ss_pred HHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCC
Q 007904 344 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTF 419 (585)
Q Consensus 344 l~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~F 419 (585)
+... |+ +++.+|+.. . . .. ...+. ....+|.|+++. .|+++=.-- .-+.|
T Consensus 169 l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 AKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred HHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 9653 64 578888741 1 1 10 01111 123479999887 898874421 13689
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh-cc-ccCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhH
Q 007904 420 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGL 495 (585)
Q Consensus 420 t~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~-~w-t~Grai~AsGSPf--~pv~~~G~~~~p~Q~NN~yiFPGigl 495 (585)
+++.+..|. +..++.=.|.= ++--++|+ ++ ..|+.-.|.=-=| +|.. + .. -=+..|+++-|=+|-
T Consensus 223 ~~~~~~~mk---~ga~lIN~aRg----~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~-~p--L~~~~nvilTPHia~ 291 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTARG----KVVDTKALVKALKEGWIAGAGLDVFEEEPYY-N-EE--LFSLKNVVLAPHIGS 291 (333)
T ss_pred CHHHHhcCC---CCeEEEECcCc----hhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-C-ch--hhcCCCEEECCcCCc
Confidence 999999995 66777766543 33333333 22 4565433321111 1111 1 11 123458888888874
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=4.2 Score=42.99 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-+|++.=++..|.+++.+++|++|-+ ..|--+|.||.. .| ..+.+|+|+
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~----------- 190 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK----------- 190 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 355677888999999999999999999999986 578888888864 24 345666553
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.||+++|+
T Consensus 191 -------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 -------------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347788887 99999999999999999997
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=4.2 Score=43.00 Aligned_cols=85 Identities=20% Similarity=0.379 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..|.+|..+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------ 190 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------ 190 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 34567788889999999999999999999986 578888888864 24 346666542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788887 99999999999999999997
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=2.9 Score=44.15 Aligned_cols=86 Identities=19% Similarity=0.348 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.-++..|.+|+.+++|++|.+ ..|.-+|.||..- ..| ..+.+|.|+
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~------------- 193 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG------------- 193 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC-------------
Confidence 3567888899999999999999999999985 6788888888531 013 235566542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 -----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 -----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred -----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=3.1 Score=44.03 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=69.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-+|++.=++..+.+++..++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~-------ATVtichs~----------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----EN-------CSVTICHSK----------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 445678888899999999999999999999986 578888888864 24 245666553
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 193 -------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1347788887 99999999999999999997
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=86.03 E-value=0.27 Score=46.89 Aligned_cols=90 Identities=23% Similarity=0.399 Sum_probs=49.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-Cccc-----------CCCccCCchhchhhccc
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIV-----------SSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~-----------~~r~~~l~~~k~~fa~~ 390 (585)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ..+. ....+.+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5668999999999999999998763 53 34455542 0000 000000000 002211
Q ss_pred ----cCC--CCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHH
Q 007904 391 ----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 428 (585)
Q Consensus 391 ----~~~--~~~L~e~v~~vkptvLIG~S-----~~~g~Ft~evi~~Ma 428 (585)
.+. ...|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 011 1358888876 79999743 445699999999996
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=3 Score=42.71 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=56.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC-CccCCchh--chhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHF--KKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~~l~~~--k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+. +...+.-. ....-.......++.++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999988753 4 46788877 210000 00001000 00000000112355565543
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 444 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~ 444 (585)
+|++|=+... ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 7766533332 2478999988764 34567888999863
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=85.39 E-value=4.9 Score=42.91 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=78.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|.|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. ..+..-+|.+...++........+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999887652 55110001169999974221 1111112333322232111111255677877
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEecCCCCCcCCCCHHHHhccccC--cEEEecC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 466 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~-~erPIIFaLSNPt~~~E~tpeda~~wt~G--rai~AsG 466 (585)
.|++|=+.+.+ |- .=+++.+.|.++ ++.-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 88888555554 21 124678888999 4999999999998 3334444555522 2277888
Q ss_pred CCCCc
Q 007904 467 SPFDP 471 (585)
Q Consensus 467 SPf~p 471 (585)
+-.+.
T Consensus 151 t~LDs 155 (324)
T TIGR01758 151 TRLDH 155 (324)
T ss_pred eehHH
Confidence 65543
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=85.32 E-value=3.1 Score=44.08 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~ 390 (585)
|++++..... -..++++|+|+|..|..++..+... .|+ +++.++++. ..+ .......+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4445544432 2347999999999988777766542 244 678888763 221 22222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHH
Q 007904 391 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEE 452 (585)
Q Consensus 391 ----~~~~~~L~e~v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tped 452 (585)
.....++.++++. .|++|-++.. ..+|+.++++.- ..|+.--|+-..+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~g-----~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHPG-----LHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCCC-----ceEEeeCCCCCCcccCCHHH
Confidence 1123678899986 8999876533 346777766521 22332224433456888765
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.30 E-value=4.3 Score=43.35 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=66.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
-||.|+|| |..|..+|-.|+. .|+-.-.-...|.|+|.+.-. .++..-+|.+..-++.....-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 37999998 9999999988764 255110011279999985311 111111133222122111111135567777
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~e-rPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||.
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 7 89888554443 31 12467788889997 99999999998
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.24 E-value=4.4 Score=43.40 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=63.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC---chhchhhcccc------C-
Q 007904 326 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL---QHFKKPWAHEH------E- 392 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~---~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l---~~~k~~fa~~~------~- 392 (585)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-+.|++|-+...+.-++ ..+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999987 333334531 122456799998876543112 11222221100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 393 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
...++.|.++...+||+|-+++.. ...+-+.+.+. +..++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012688888877899999999633 33333333343 4677775
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.19 E-value=14 Score=37.88 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988653 64 68888854
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.18 E-value=2.3 Score=45.50 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=53.9
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---cC-----CCCHHHHhccccCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QS-----ECTAEEAYTWSKGRAIFASGSPFD 470 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~---~~-----E~tpeda~~wt~Grai~AsGSPf~ 470 (585)
++-+..+|+++|..|+. ++-..++-.. .++-+|=|+.=.-||.. +- +-|.++++++.. . |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS-~l~~s~la~~-~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTS-GLLPTDFYAR-ATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCC-ccCHHHHHHh-cCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcCCE
Confidence 34455677777777775 3322222222 23334446766777753 22 234455555421 1 21111133
Q ss_pred cceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHH
Q 007904 471 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 513 (585)
Q Consensus 471 pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aA 513 (585)
||.++ ...||-.=|-+.+|-+-=++-+..--..|.+-+-.|
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a 219 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDA 219 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44432 246777777777776666555555444555555544
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.9 Score=44.81 Aligned_cols=117 Identities=20% Similarity=0.391 Sum_probs=69.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhcccc---CCCCCHHHH
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 400 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~~---~~~~~L~e~ 400 (585)
|.|+|||..|.++|..+.. .|+ + .++++|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999987764 265 2 79999985 11110 011100 000000 011344 45
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCc---EEE
Q 007904 401 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR---AIF 463 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Gr---ai~ 463 (585)
+++ .|++|=+.+.+ | -+-+++++.|.+++...+|+-.|||. ......+++++ |. -+|
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 665 88888433322 2 12347889999999999999999998 23333444544 32 477
Q ss_pred ecCC
Q 007904 464 ASGS 467 (585)
Q Consensus 464 AsGS 467 (585)
++|+
T Consensus 138 Glgt 141 (300)
T cd01339 138 GMAG 141 (300)
T ss_pred Eecc
Confidence 7774
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=84.72 E-value=2.7 Score=44.52 Aligned_cols=102 Identities=16% Similarity=0.319 Sum_probs=64.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCC--CCCHHHHhcc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEP--VNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~--~~~L~e~v~~ 403 (585)
||.|+|||..|.-+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+. ..|.. ..-. .++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999988875 265 358999997411111111113221 22221 0001 133 466776
Q ss_pred cCCcEEEeccCC---CCCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGV---GRTFT--------------KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~---~g~Ft--------------~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+. +| -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 8888855554 34 23 57888899999999999999998
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=5.8 Score=42.18 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~------------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR------------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC-------------
Confidence 3466888889999999999999999999986 578888888864 23210 0224444432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 195 -----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 -----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888886 99999999999999999997
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=84.59 E-value=0.92 Score=44.82 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 568899999999999999999999875 87 7899999973
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.23 E-value=1.8 Score=44.63 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=57.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc--hhhcc------ccCCCCCHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK--KPWAH------EHEPVNNLL 398 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k--~~fa~------~~~~~~~L~ 398 (585)
||.|+|+|..|..+|..|... | .+++++|+..-..+ .+.... ..+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA----EINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH----HHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 799999999999999998753 5 35778887421110 010000 00000 001124677
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~ 444 (585)
++++. +|++| ++... ...+++++.+..+ .+.-+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 77765 77776 33322 3578888887765 34568888887543
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.16 E-value=23 Score=36.37 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=58.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
..||.|+|+|.-|..||+.|+.. |.- ...+++++|+. . .+.+...+.+|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 46899999999999999988753 410 12457777652 0 011122112211 1112456677764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
.|++| ++-.+ -..+++++.+... .+..+|.-+++-+ ++++.-+|.
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi-----~~~~l~~~~ 111 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV-----STHSIRNLL 111 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC-----CHHHHHHHc
Confidence 67655 33333 2345666666543 3456777776554 344444443
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.98 E-value=6.5 Score=41.59 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..|.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HD-------ATVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEECCC------------
Confidence 44577888889999999999999999999986 578888888864 24 245556442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247788887 99999999999999999997
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=9.4 Score=40.43 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHh----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEc
Q 007904 304 TASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 367 (585)
Q Consensus 304 TaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD 367 (585)
.|=-+++.+|+..|-. +..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|
T Consensus 85 VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~ 152 (303)
T PRK06436 85 VAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYT 152 (303)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEEC
Confidence 3444566666665522 35799999999999999999998664 32 65 588888
Q ss_pred CCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 368 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 368 ~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+... .+.. . ....+|.|+++. .|+++=+- ..-++|+++.+..|. +..++.=.|.-.
T Consensus 153 r~~~-----~~~~--------~--~~~~~l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 153 RSYV-----NDGI--------S--SIYMEPEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred CCCc-----ccCc--------c--cccCCHHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 7521 0101 0 012478898876 89887432 123689999999996 677888777544
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.24 E-value=8.4 Score=41.16 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=82.3
Q ss_pred CCCeeecc-CC--CchHHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 007904 292 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 349 (585)
Q Consensus 292 ~~~~~FnD-Di--QGTaaV~lAgll~A~r~-------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 349 (585)
..+.+.|- +. +..|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+...
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-- 168 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-- 168 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 45555553 22 23444567777777663 13458899999999999999999988642
Q ss_pred hhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc-CC---CCCCCHHHHH
Q 007904 350 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS-GV---GRTFTKEVIE 425 (585)
Q Consensus 350 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S-~~---~g~Ft~evi~ 425 (585)
|. +++.+|+.. .. . ..+.. ...+|.|+++. .|+++=.- .. -+.|.++++.
T Consensus 169 ---G~-------~V~~~d~~~----~~---~----~~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 169 ---GA-------TITAYDAYP----NK---D----LDFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred ---CC-------EEEEEeCCh----hH---h----hhhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 64 588888641 10 0 01211 23478899886 88776332 21 1567788888
Q ss_pred HHHcCCCCcEEEecCCCCCcCCCCHHHHhcc-ccCcEEEe
Q 007904 426 AMASFNEKPLILALSNPTSQSECTAEEAYTW-SKGRAIFA 464 (585)
Q Consensus 426 ~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w-t~Grai~A 464 (585)
.|. +..++.-.|.- .-+.-++.+++ ..|+.-.|
T Consensus 223 ~mk---~gavlIN~aRG---~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 223 HVK---KGAILVNAARG---AVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred cCC---CCcEEEEcCCc---cccCHHHHHHHHHcCCeeEE
Confidence 885 55566655432 23333333333 34654433
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=83.20 E-value=5.6 Score=41.99 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=63.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~---~~~~~~L~e~ 400 (585)
...+++|+|+|..|..++..+... .++ ++|+++|+. ..+ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876553 243 788888773 221 22222222211 1123678889
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCcCCCCHHH
Q 007904 401 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 452 (585)
Q Consensus 401 v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaL-SNPt~~~E~tped 452 (585)
+++ .|++|-+++.. .+|+.++++ +.-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 976 99998776543 246666654 22244443 4556677888753
|
|
| >PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=7.7 Score=42.70 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcch
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 335 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs 335 (585)
.++|++++.+.+|- | .+.+-+.+++.| +-+..++.-..+.|+..|++|+|-+.
T Consensus 248 T~~~L~~la~~~g~-------~--~~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~ 300 (427)
T PRK02842 248 TRAWLEAAAAAFGI-------D--PDGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQ 300 (427)
T ss_pred HHHHHHHHHHHhCc-------C--HhHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCch
Confidence 68999999998863 1 111222333333 33455566666778889999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-----ccCCCCCHHHHhcccCCcEEE
Q 007904 336 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPTILI 410 (585)
Q Consensus 336 Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-----~~~~~~~L~e~v~~vkptvLI 410 (585)
-.+++++.|.+. .|+.. ..+-+. - .++ +.....-+.+.. +..+...+++.|+..|||.||
T Consensus 301 ~~~~la~~L~ee----lGm~~-------v~v~t~-~--~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDlli 365 (427)
T PRK02842 301 LEIPLARFLSRE----CGMEL-------VEVGTP-Y--LNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVV 365 (427)
T ss_pred hHHHHHHHHHHh----CCCEE-------EEeCCC-C--CCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEE
Confidence 899999998863 37732 111110 0 111 101111111111 111223458889999999999
Q ss_pred ecc
Q 007904 411 GSS 413 (585)
Q Consensus 411 G~S 413 (585)
|-|
T Consensus 366 g~~ 368 (427)
T PRK02842 366 CGL 368 (427)
T ss_pred ccC
Confidence 976
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.03 E-value=3.7 Score=41.84 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=56.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC-CccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
||.|+|+|+.|..+|..|.++ | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888753 5 468888874211000 0000100000000000112345443 3 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCC-CcEEEecCCCCC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASFNE-KPLILALSNPTS 444 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~~e-rPIIFaLSNPt~ 444 (585)
+|++| ++... --++++++.++.+.. .-+|+.+.|.-.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 78777 34333 247999999986543 346777999753
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=83.01 E-value=1.1 Score=44.31 Aligned_cols=76 Identities=16% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-c--CC-CCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H--EP-VNN 396 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~--~~-~~~ 396 (585)
++|++.||+|+|+|.-|.=+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... . .+ ...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999875 87 8999999973 2221 2332 112221 1 11 135
Q ss_pred HHHHhcccCCcEEEecc
Q 007904 397 LLDAVKVIKPTILIGSS 413 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S 413 (585)
+.+.++...|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888889999877543
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN | Back alignment and domain information |
|---|
Probab=82.90 E-value=2.3 Score=46.94 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=47.6
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC
Q 007904 313 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE 392 (585)
Q Consensus 313 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~ 392 (585)
+.++.-....|...||+++|-+.-..|+++.+.+ .|+.. ..+..-+..... ..+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~~~~~~~~~-----~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAVTTTGSPLL-----QKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEEeCCCCHHH-----HhCCcC-cEEe---C
Confidence 3444444456778999999988889999999764 48732 111111111000 001110 0011 1
Q ss_pred CCCCHHHHhcccCCcEEEeccC
Q 007904 393 PVNNLLDAVKVIKPTILIGSSG 414 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~ 414 (585)
+...|++.++..+||++||-|-
T Consensus 361 D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc
Confidence 2235788888889999998654
|
This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=12 Score=39.67 Aligned_cols=135 Identities=13% Similarity=0.200 Sum_probs=88.3
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 344 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 344 (585)
..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|--+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666422 235556677778777632 2468999999999999999999998
Q ss_pred HHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 007904 345 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 420 (585)
Q Consensus 345 ~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft 420 (585)
.. | |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=. ...-++|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 54 3 65 5888888531 00 0 011 12479999987 8988732 22237999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc--ccCcEE
Q 007904 421 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 462 (585)
Q Consensus 421 ~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w--t~Grai 462 (585)
++.++.|. +..++.=.| +.++-=|+|+-. ..|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~a----RG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVG----RGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHcCCeE
Confidence 99999996 666777554 455555555432 456644
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.30 E-value=6.9 Score=40.36 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999998753 63 68888874
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.28 E-value=8 Score=41.18 Aligned_cols=88 Identities=14% Similarity=0.247 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..+.+++.++++++|.+ .-|.-+|.||... |.. ....+.+|.|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~------------- 194 (297)
T PRK14167 136 FKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR------------- 194 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC-------------
Confidence 3457888889999999999999999999986 5788888888641 110 01234445432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-+.|.++.++.++|+
T Consensus 195 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 -----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.20 E-value=4.3 Score=43.46 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=68.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhccccCCC---CCHHHHh
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAV 401 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~~~~---~~L~e~v 401 (585)
.||.++|||..|-..|-+|+. .++. +.+.|+|.. +...-...| |.+ -..+....... .+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~-~~~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSH-AAAPLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhh-cchhccCceEEecCCC-hhhh
Confidence 389999999999999888843 3552 479999987 221111111 322 11221110011 23 4556
Q ss_pred cccCCcEEEec---cCCCC-----------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc
Q 007904 402 KVIKPTILIGS---SGVGR-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 456 (585)
Q Consensus 402 ~~vkptvLIG~---S~~~g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w 456 (585)
+. .|+.+=+ ...|| -.-+++.+++++++...||+-.|||. |.++|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 66 7877733 33444 24467889999999999999999999 77777
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=82.03 E-value=4.2 Score=42.51 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC---CCCCH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---PVNNL 397 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L 397 (585)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=.-.. +++. |..+..+.- ...-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999998875 87 78999998744332 2432 211111100 01235
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 398 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+.++
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 6666666777655332 223455444433221223355566665533
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=81.98 E-value=1.9 Score=39.59 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=29.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999874 76 7899999873
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=81.81 E-value=1.9 Score=41.79 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+++|+|..|..||+.|+.+ |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999864 86 789999987
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.77 E-value=4.8 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
-...||.|+|||+-|+.+|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999976
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.72 E-value=9.1 Score=40.52 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 305 aaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.-+|-.|++.=++..+.+++.++++++|-+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 467788889999999999999999999986 578888888864 23 245555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347778887 99999999999999999997
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=9.2 Score=40.59 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..|.+|+.+++|++|-+ ..|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 45577888899999999999999999999986 578888888864 23210 1234444332
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=81.65 E-value=1.7 Score=44.34 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 357889999999999999999999764 87 799999987
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=81.62 E-value=3.4 Score=42.37 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=37.8
Q ss_pred CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 293 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++.-+|-|- .|++.+++..+...+..+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 93 ~l~g~NTD~--------~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 93 KLVGYNTDG--------IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred EEEEEcCCH--------HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 345556553 3455566554555667899999999888777776654 24 368888863
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=81.55 E-value=1.5 Score=51.14 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=35.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 87 89999998643
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=6.4 Score=41.73 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..|.+++..++|++|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~------------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK------------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 4467888889999999999999999999985 678888888864 24 346666542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 189 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 -----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1247788887 99999999999999999997
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=81.44 E-value=12 Score=39.84 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 303 GTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
..|--+++-+|+..|.. +..+.++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666665432 3468899999999999999999999753 75 47777
Q ss_pred cCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 367 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 367 D~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
|+.. .. .+.. ..+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|
T Consensus 166 ~~~~----~~---~~~~-~~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a-- 226 (312)
T PRK15469 166 SRSR----KS---WPGV-QSF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA-- 226 (312)
T ss_pred eCCC----CC---CCCc-eee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC--
Confidence 7631 11 1110 111 123579999987 888873321 12578888888885 455666554
Q ss_pred CCcCCCCHHHHhc--cccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhh
Q 007904 443 TSQSECTAEEAYT--WSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 494 (585)
Q Consensus 443 t~~~E~tpeda~~--wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGig 494 (585)
+.++--|+|+. ...|+.-.|.--=|++--.... ..-=+..|+++-|=+|
T Consensus 227 --RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 227 --RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred --CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCC
Confidence 45666665552 2456654332222321111000 0012446888888776
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=81.43 E-value=2.2 Score=47.81 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcC-CCe--eeccCCCchHHHHHHHHHHHHHHh--------CCCcccc
Q 007904 258 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEH 326 (585)
Q Consensus 258 efv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~-~~~--~FnDDiQGTaaV~lAgll~A~r~~--------g~~l~d~ 326 (585)
+....+.... |+ |..|=+....-.++.++|.- .+| ++|++..+.|....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 54 44444666777788899974 455 458888888888888888877654 1224457
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~ 346 (585)
+++|+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999887765
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=81.41 E-value=4.8 Score=42.70 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=75.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~ 403 (585)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+. .+|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~-~~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHG-SAFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHh-hccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887764 265 467999997421111110113221 1232211 11135554 666
Q ss_pred cCCcEEEeccCC---CCCCC------------HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecC
Q 007904 404 IKPTILIGSSGV---GRTFT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 466 (585)
Q Consensus 404 vkptvLIG~S~~---~g~Ft------------~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsG 466 (585)
.|++|=+.+. +| -| +++++.|.+++..-+|+-.|||.. ....-+++++ .-+-+|++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecC
Confidence 8988754443 33 23 367788899999999999999983 4444455542 113467776
Q ss_pred CC
Q 007904 467 SP 468 (585)
Q Consensus 467 SP 468 (585)
.-
T Consensus 146 t~ 147 (312)
T cd05293 146 CN 147 (312)
T ss_pred ch
Confidence 53
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=6.7 Score=41.46 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=68.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-.|++.=++..|.+|+..++|++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~----------- 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF----------- 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC-----------
Confidence 345677888999999999999999999999986 578888888864 24 245666542
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1246677776 99999999999999999997
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=81.07 E-value=0.68 Score=56.39 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|||.-|+-+++.|+.+ |+.-. ...+|.++|.+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468899999999999999999999875 66211 13689999986
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=80.96 E-value=6.2 Score=43.14 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..+.+++.+++||+|-+ -.|.-+|.||.. .| ..+.+|.++
T Consensus 209 ~f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~------------ 264 (364)
T PLN02616 209 LFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR------------ 264 (364)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC------------
Confidence 34567778889999999999999999999985 568888888864 24 246666442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 265 ------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357788887 99999999999999999997
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=80.86 E-value=12 Score=42.33 Aligned_cols=37 Identities=22% Similarity=0.076 Sum_probs=30.0
Q ss_pred eCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 479 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 479 ~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
..||..+|-+.+|.+.=+..+...--++.+.+.++.+
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3578899999999999888888877788887777654
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.75 E-value=2.6 Score=44.21 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=51.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch--hhc--cc----cCCCCCH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWA--HE----HEPVNNL 397 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~--~fa--~~----~~~~~~L 397 (585)
.||.|+|+|+.|.++|..|... | .++.++|+..= +.+.+..... .+. .. .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4799999999999999999764 5 34777777311 0001111000 000 00 0112467
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 398 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|+++. .|++|=+-. . ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~v~-~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVAVP-S-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEECc-h-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 777765 666653222 2 13577776654 334666667753
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=11 Score=41.30 Aligned_cols=143 Identities=16% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ . .+ .. ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~-~--~~-~~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE-L--EK-ET--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh-h--Hh-hc--CceecCCHHH
Confidence 4568999999999999999999999753 65 4777887532 0 00 0 00 00 0112347999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh-cc-ccCcEEEecCCCCCcce
Q 007904 400 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFE 473 (585)
Q Consensus 400 ~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~-~w-t~Grai~AsGSPf~pv~ 473 (585)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++.-|+|+ +. ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 888873321 12689999999995 5556665543 444444443 22 35665555543332111
Q ss_pred eCCeeeCcCCCcccccchhhh
Q 007904 474 YNGKVFVPGQANNAYIFPGFG 494 (585)
Q Consensus 474 ~~G~~~~p~Q~NN~yiFPGig 494 (585)
... ...--+..|..+-|=++
T Consensus 323 lp~-d~pL~~~pNvilTPHia 342 (386)
T PLN03139 323 APK-DHPWRYMPNHAMTPHIS 342 (386)
T ss_pred CCC-CChhhcCCCeEEccccc
Confidence 100 00011235778888776
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.73 E-value=3.3 Score=46.43 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..|..+++.+++|+|+|.+|.+++..+.+ .|. +++++|+.
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4678888888889999999999999777777776654 362 57777763
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=80.72 E-value=8.4 Score=40.68 Aligned_cols=100 Identities=24% Similarity=0.364 Sum_probs=63.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-----c-cCC---CC
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----E-HEP---VN 395 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-----~-~~~---~~ 395 (585)
.||.|+|| |..|..+|..++. .|+ ...++++|++--+ +.+..++.++.+ . ... ..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECC
Confidence 37999998 9999999998775 365 2479999984211 112112211111 0 001 12
Q ss_pred CHHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 396 NLLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+. +.+++ .|++|=+.+.+ | .+-+++++.|.+++...+|+--+||.
T Consensus 66 d~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 66 DL-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred CH-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 43 45766 88887555432 2 24567888899999999999999997
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.06 E-value=8.9 Score=39.89 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=56.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc-
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v- 404 (585)
||.|+|.|..|..+|..|... | .+++++|+.. .+ . ..+... .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~----~~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---V----EALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---H----HHHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999763 5 3577787741 11 1 122211 11235777887765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~-~~erPIIFaLSNPt 443 (585)
+||++|=+-. .+...++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3776653322 33356667665543 34567888887643
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.06 E-value=14 Score=39.26 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=106.8
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 344 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 344 (585)
..+.+.|--- +.+|=-+++.+|+..|-. +..|.++++.|+|.|..|-.+|+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666322 345556677777766532 2358899999999999999999998
Q ss_pred HHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 007904 345 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 420 (585)
Q Consensus 345 ~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft 420 (585)
... |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ...-|.|+
T Consensus 168 ~~f-----gm-------~V~~~~~~~-----~~~---~----~-----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EAF-----GM-------RVLIGQLPG-----RPA---R----P-----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hhC-----CC-------EEEEECCCC-----Ccc---c----c-----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 642 65 577777652 101 0 0 12379999987 8988832 22247999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc--cccCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhHH
Q 007904 421 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLG 496 (585)
Q Consensus 421 ~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~--wt~Grai~AsGSPf--~pv~~~G~~~~p~Q~NN~yiFPGiglG 496 (585)
++.+..|. +..++.=.|. .++--|+|+. ..+|+.-.|.=-=| +|.. .+....--+..|+++-|=++-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccC
Confidence 99999996 5667775543 4455454442 24566543321111 1111 1111110034588888887722
Q ss_pred HHHhCCcccCHHHHHHHHHHHHccc
Q 007904 497 LVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 497 ~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
.. .-.+.|...+++.+....
T Consensus 289 t~-----e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 289 SR-----EARQRIVGQLAENARAFF 308 (317)
T ss_pred CH-----HHHHHHHHHHHHHHHHHH
Confidence 21 122344444555554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 585 | ||||
| 2aw5_A | 575 | Crystal Structure Of A Human Malic Enzyme Length = | 1e-153 | ||
| 1gz3_A | 554 | Molecular Mechanism For The Regulation Of Human Mit | 1e-149 | ||
| 1gq2_A | 555 | Malic Enzyme From Pigeon Liver Length = 555 | 1e-148 | ||
| 1efk_A | 584 | Structure Of Human Malic Enzyme In Complex With Ket | 1e-145 | ||
| 1qr6_A | 584 | Human Mitochondrial Nad(P)-Dependent Malic Enzyme L | 1e-145 | ||
| 1do8_A | 564 | Crystal Structure Of A Closed Form Of Human Mitocho | 1e-145 | ||
| 1gz4_A | 551 | Molecular Mechanism Of The Regulation Of Human Mito | 1e-144 | ||
| 1llq_A | 605 | Crystal Structure Of Malic Enzyme From Ascaris Suum | 1e-139 | ||
| 3nv9_A | 487 | Crystal Structure Of Entamoeba Histolytica Malic En | 8e-17 | ||
| 2dvm_A | 439 | Nad Complex Structure Of Ph1275 Protein From Pyroco | 8e-10 | ||
| 2a9f_A | 398 | Crystal Structure Of A Putative Malic Enzyme ((S)- | 5e-09 | ||
| 1ww8_A | 439 | Crystal Structure Of Malic Enzyme From Pyrococcus H | 9e-09 | ||
| 2hae_A | 386 | Crystal Structure Of A Putative Malic Enzyme (Malat | 9e-07 | ||
| 1vl6_A | 388 | Crystal Structure Of Nad-Dependent Malic Enzyme (Tm | 2e-05 |
| >pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575 | Back alignment and structure |
|
| >pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554 | Back alignment and structure |
|
| >pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555 | Back alignment and structure |
|
| >pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584 | Back alignment and structure |
|
| >pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584 | Back alignment and structure |
|
| >pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564 | Back alignment and structure |
|
| >pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551 | Back alignment and structure |
|
| >pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605 | Back alignment and structure |
|
| >pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme Length = 487 | Back alignment and structure |
|
| >pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus Horikoshii Length = 439 | Back alignment and structure |
|
| >pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)- Malate:nad+ Oxidoreductase (Decarboxylating)) Length = 398 | Back alignment and structure |
|
| >pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus Horikoshii Ot3 Length = 439 | Back alignment and structure |
|
| >pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate Oxidoreductase) Length = 386 | Back alignment and structure |
|
| >pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542) From Thermotoga Maritima At 2.61 A Resolution Length = 388 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555 | Back alignment and structure |
|---|
Score = 850 bits (2197), Expect = 0.0
Identities = 276/536 (51%), Positives = 374/536 (69%), Gaps = 3/536 (0%)
Query: 51 RDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELE 110
RDP NKG+AFT +ER + GLLPP + Q Q ++ + + L +Y+ +M L+
Sbjct: 8 RDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQ 67
Query: 111 ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKN 170
+RNE+LFYK+L ++E +P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I +L++
Sbjct: 68 DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQS 127
Query: 171 WPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN 230
WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P CLP+ +DVGT+N
Sbjct: 128 WPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDN 187
Query: 231 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY 290
E LLKD YIGLR +R GQ Y +LLDEFM AV YG LIQFEDFAN NAF LL KY
Sbjct: 188 ETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKY 247
Query: 291 GTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350
+ FNDDIQGTASV +AG++AAL++ L++H LF GAGEA GIA LI + + K
Sbjct: 248 RNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQK 307
Query: 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILI 410
+ EE K+I +VDSKGLIV R L K+ +AHEH + NL D VK IKPT+LI
Sbjct: 308 E-GVSKEEAIKRIWMVDSKGLIVKGRAS-LTPEKEHFAHEHCEMKNLEDIVKDIKPTVLI 365
Query: 411 GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD 470
G + +G FT+++++ MA+FN++P+I ALSNPTS++ECTAE+ Y +++GR IFASGSPFD
Sbjct: 366 GVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFD 425
Query: 471 PFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKG 529
P +G+ PGQ NN+Y+FPG LG++ G + DD+ L +E +A++V+EEN ++G
Sbjct: 426 PVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQEG 485
Query: 530 LIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585
+YPP I+++S IA +A +AY A+ P+P++L S +Y+ Y +
Sbjct: 486 RLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCFV 541
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564 | Back alignment and structure |
|---|
Score = 845 bits (2185), Expect = 0.0
Identities = 267/537 (49%), Positives = 370/537 (68%), Gaps = 4/537 (0%)
Query: 51 RDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELE 110
+PR NKG+AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+ +M ++
Sbjct: 10 LNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQ 69
Query: 111 ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKN 170
ERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G + ++ N
Sbjct: 70 ERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDN 129
Query: 171 WPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN 230
WPE ++ +VVTDGERILGLGDLG GMGIPVGKL LYTA GIRP CLP+ +DVGT+N
Sbjct: 130 WPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDN 189
Query: 231 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY 290
LLKD FY+GL Q+R Q+Y +L+DEFM A+ YG LIQFEDF NHNAF L KY
Sbjct: 190 IALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKY 249
Query: 291 GTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350
+ FNDDIQGTA+V LAG++AA K+I ++EH+ LFLGAGEA GIA LI + + +
Sbjct: 250 REKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVE 309
Query: 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKVIKPTI 408
+E +KKI + D GL+V RK + +++P+ H + DAV ++KP+
Sbjct: 310 N-GLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPST 368
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
+IG +G GR FT +VI AMAS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSP
Sbjct: 369 IIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSP 428
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
F P + +G+VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E
Sbjct: 429 FGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELA 488
Query: 528 KGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
+G +YPP +NI+++S NIA V Y +A R P P++ K + + Y +
Sbjct: 489 QGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSL 545
|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605 | Back alignment and structure |
|---|
Score = 843 bits (2179), Expect = 0.0
Identities = 262/576 (45%), Positives = 373/576 (64%), Gaps = 18/576 (3%)
Query: 25 GGVEDVYGEDRATEDQ-------LVTPWTISVA-------RDPRHNKGLAFTEKERDAHY 70
EDVY + D+ L P ++ ++PR NKG+ F+ ER
Sbjct: 4 AHHEDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLG 63
Query: 71 LRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLP 130
L GLLPPA ++Q+ Q +++ +R+ L +Y+ + L++RNE+LFY+++ D+V+EL+P
Sbjct: 64 LHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMP 123
Query: 131 VVYTPTVGEACQKYGSIFRRPQGLYISLKEKG--KILEVLKNWPERSIQVIVVTDGERIL 188
+VYTPTVG ACQ +G I+R+P+GLYI++ + KI ++L NW E ++ IVVTDGERIL
Sbjct: 124 IVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERIL 183
Query: 189 GLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRAT 248
GLGDLG G+GIPVGKLALY ALGG++P CLP+ +DVGTNN LL D FYIGLR +R
Sbjct: 184 GLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVR 243
Query: 249 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVV 308
G++Y LLD FM A + YG+K LIQFEDFAN NAF LL KY + +FNDDIQGTASV+
Sbjct: 244 GKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVI 303
Query: 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368
+AG++ ++ +++ ++LF GAG A TGIAE+I ++ + EE +I L+D
Sbjct: 304 VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGI-SKEEACNRIYLMDI 362
Query: 369 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 428
GL+ +RK+ + +A + ++L+ ++ +P LIG+S V F +EVI AMA
Sbjct: 363 DGLVTKNRKE-MNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMA 421
Query: 429 SFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAY 488
NE+P+I ALSNPTS++ECTAEEAYT++ G A++ASGSPF FE NG + PGQ NNAY
Sbjct: 422 EINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAY 481
Query: 489 IFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAAN 548
IFPG LG ++ V +D+ L A++ +A VTE++ + G +YP IR+IS IA
Sbjct: 482 IFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVE 541
Query: 549 VAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
+A Y+ G A P+P++L K + +Y Y
Sbjct: 542 MAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEEL 577
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-40
Identities = 122/454 (26%), Positives = 177/454 (38%), Gaps = 102/454 (22%)
Query: 129 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 188
YTP V I +G V VV+D R+L
Sbjct: 61 FNAYYTPGVSRISTN---IRDNNDSSL-FYSLRGNF-------------VGVVSDSTRVL 103
Query: 189 GLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
G GD+ G G+ V GK L LGGI +PI +D + N++ D
Sbjct: 104 GDGDVTPPG-GLGVMEGKALLMKYLGGID---AVPICID--SKNKEGKND---------- 147
Query: 247 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFANHNAFELLAKYGTTHL-------V 296
D + V++ +G I ED + N +++L L V
Sbjct: 148 ---------PDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDV-----LRESCDIPV 190
Query: 297 FNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPV 356
++DD QGTASV LAG++ ALKL+ + E R +F+GAG + T LI A
Sbjct: 191 WHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLI-----VTAGAD- 244
Query: 357 EETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE------HEPVNNLLDAVKVIKPTILI 410
KKI + DSKG + + R+D + + E ++ +A +LI
Sbjct: 245 ---PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV--GADVLI 299
Query: 411 G-SSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG-SP 468
S+ E I++M EKP++ +NP E EA G I A+G
Sbjct: 300 SLSTPGPGVVKAEWIKSMG---EKPIVFCCANPV--PEIYPYEAK--EAGAYIVATGRGD 352
Query: 469 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEK 528
F P Q NN+ FPG G +I A ++ D+M +AAS ALA+ +
Sbjct: 353 F-----------PNQVNNSVGFPGILKGALIVRARKITDNMAIAASRALAEFAEKRGINP 401
Query: 529 GLIYP-PFSNIRKISANIAANVAAKAYELGVATR 561
I AA+VA +A + GVA
Sbjct: 402 DNIIGTMD-EPGIFPK-EAADVAMQAIKDGVARV 433
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-40
Identities = 114/450 (25%), Positives = 165/450 (36%), Gaps = 107/450 (23%)
Query: 129 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 188
L + YTP V I + Y L K V V++DG +L
Sbjct: 36 LSIAYTPGVASVSSA---IAKDKTLAY-DLTTKKNT-------------VAVISDGTAVL 78
Query: 189 GLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
GLGD+G + +PV GK AL+ A G+ +PI +D KD
Sbjct: 79 GLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDT--------KD---------- 116
Query: 247 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFANHNAFELLAKYGTTHL-------V 296
+E +S VK +G I ED + FE+ + L V
Sbjct: 117 ---------TEEIISIVKALAPTFGG---INLEDISAPRCFEIEQR-----LIKECHIPV 159
Query: 297 FNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPV 356
F+DD GTA VVLA + +LKL+ +L E + G G AG I + +
Sbjct: 160 FHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKL-----------L 208
Query: 357 EETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN---NLLDAVKVIKPTILIGSS 413
K+ +VD G+I L A L DA++ I IG S
Sbjct: 209 AAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALE--GADIFIGVS 266
Query: 414 GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG-SPFDPF 472
E I MA +P+I A++NP E +EA G I +G S F
Sbjct: 267 -APGVLKAEWISKMA---ARPVIFAMANPI--PEIYPDEAL--EAGAYIVGTGRSDF--- 315
Query: 473 EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIY 532
P Q NN FPG G + + A + +M +AA++ +A V ++ I
Sbjct: 316 --------PNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALSTTNII 367
Query: 533 P-PFSNIRKISANIAANVAAKAYELGVATR 561
P F +A +V + +
Sbjct: 368 PDAF-KEGVAEI-VAKSVRSVVLKSEGHHH 395
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 8e-32
Identities = 123/453 (27%), Positives = 186/453 (41%), Gaps = 106/453 (23%)
Query: 129 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 188
L + YTP V E C++ I R P +Y KG + V VV+DG RIL
Sbjct: 34 LTLAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------VAVVSDGSRIL 76
Query: 189 GLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
GLG++G G+PV GK L+ GG+ PI + ++
Sbjct: 77 GLGNIGPLA-GLPVMEGKALLFKRFGGVD---AFPIMIKE--------QE---------- 114
Query: 247 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFANHNAFELLAKYGTTHL-------V 296
++F+ VK +G I ED A+ F +L + L V
Sbjct: 115 ---------PNKFIDIVKAIAPTFGG---INLEDIASPKCFYILER-----LREELDIPV 157
Query: 297 FNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPV 356
F+DD QGTA+VVLAG++ ALK++G ++E GAG AG ++ +
Sbjct: 158 FHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-----TEAGVK- 211
Query: 357 EETRKKICLVD---SKGLIVSSRKDS--LQHFKKPWAHEHEPVNNLLDAVKVIKPT-ILI 410
+ + +V+ K I++S D L ++ + N + +K +LI
Sbjct: 212 ---PENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLI 268
Query: 411 G-SSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG-SP 468
+ + IE M E ++ L+NP E EEA G I A+G S
Sbjct: 269 SFTRPGPGVIKPQWIEKMN---EDAIVFPLANPV--PEILPEEAK--KAGARIVATGRSD 321
Query: 469 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEK 528
+ P Q NN FPG G + A + D M++AA++A+A V E + E
Sbjct: 322 Y-----------PNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASIVEEPSEEN 370
Query: 529 GLIYPPFSNIRKISANIAANVAAKAYELGVATR 561
+I P N + A VA +A + GVA
Sbjct: 371 -IIPSPL-NPIVYAR-EARAVAEEAMKEGVART 400
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 2e-31
Identities = 112/444 (25%), Positives = 167/444 (37%), Gaps = 114/444 (25%)
Query: 129 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 188
L ++YTP V + + P+ Y + V VV+DG +L
Sbjct: 40 LSLLYTPGVADVARA---CAEDPEKTY-VYTSRWNT-------------VAVVSDGSAVL 82
Query: 189 GLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
GLG++G G +PV GK L+ A I PI + +
Sbjct: 83 GLGNIGPYG-ALPVMEGKAFLFKAFADID---AFPICLSE--------SE---------- 120
Query: 247 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFANHNAFELLAKYGTTHL-------V 296
++ +S VK ++G I ED F +L + L V
Sbjct: 121 ---------EEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQR-----LSEEMNIPV 163
Query: 297 FNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPV 356
F+DD QGTA VV A + ALKL + E + + G G AG I + + +
Sbjct: 164 FHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------L 212
Query: 357 EETRKKICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPT-ILIGSSG 414
+ K + VD KG++ + ++ L + A P D ++ IG S
Sbjct: 213 DLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS- 271
Query: 415 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG-SPFDPFE 473
G E I+ M+ KP+I AL+NP E E A G I A+G S
Sbjct: 272 RGNILKPEWIKKMS---RKPVIFALANPV--PEIDPELAR--EAGAFIVATGRSDH---- 320
Query: 474 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH----DDMLLAASEALAKQVTEENFEKG 529
P Q NN FPG ++ GA+ +MLL+A EA+A+ E +
Sbjct: 321 -------PNQVNNLLAFPG-----IMKGAVEKRSKITKNMLLSAVEAIARSCEPE--PER 366
Query: 530 LIYPPFSNIRKISANIAANVAAKA 553
+I F K+ N+ V A
Sbjct: 367 IIPEAFD--MKVHLNVYTAVKGSA 388
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 70/514 (13%), Positives = 148/514 (28%), Gaps = 159/514 (30%)
Query: 11 GASVL------DFDSKSTVEGGVEDVY----GEDRATEDQLVTPWTISVARDP------- 53
G + + + + ++ + + + E L + DP
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 54 -----RHNKGLAFTEKER---DAHYLRGLL------PPAVI------SQQL---QEKKLM 90
+ E R Y LL + L + K++
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 91 NSI---RQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSI 147
+ + + L + + +E + L K L ++L P E +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL-PR-------EVLT--TN- 326
Query: 148 FRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI-----LGLGDLGCQGMGIPV 202
P +S+ I E +++ V + +++ L L P
Sbjct: 327 ---P--RRLSI-----IAESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLE------PA 369
Query: 203 GKLALYTALGGIRPSACLPITV------DVGTNNEQLLKDEFY-IGLRQRRATGQEYAEL 255
++ L PSA +P + DV ++ ++ ++ + L +++ +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SI 428
Query: 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAA 315
++ + E L H ++ Y +DD+ L +
Sbjct: 429 PSIYLELKVKLENEYAL--------HR--SIVDHYNIPKTFDSDDL---IPPYLDQYFYS 475
Query: 316 -----LKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368
LK I + R +FL + LE +KI +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFL----------DFRFLE-------------QKIRHDST 512
Query: 369 KGLIVSSRKDSLQHFK--KPWAHEHEP-----VNNLLDAVKVIKPTILIGSSGVGRTFTK 421
S ++LQ K KP+ +++P VN +LD + I+ ++
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-------T 565
Query: 422 EVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455
+++ +AL EEA+
Sbjct: 566 DLLR-----------IALMAEDEA---IFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 68/424 (16%), Positives = 120/424 (28%), Gaps = 159/424 (37%)
Query: 14 VLD----------FDSKS-----TVEGGVEDVYGEDRATEDQLVTPWTISVARDPRHNKG 58
VL F+ T V D T L H+
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-----------HHSMT 297
Query: 59 LAFTEKERD---AHYLR---GLLPP----------AVISQQLQEKKLM-NSIRQYEVPLQ 101
T E YL LP ++I++ +++ ++ +
Sbjct: 298 --LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--CD 353
Query: 102 KYVAMME-----LEERNER-LFYKLLI--DNV---EELLPVVYTPTVGE-------ACQK 143
K ++E LE R +F +L + + LL +++ + K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 144 YGSIFRRPQ-------GLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ 196
Y + ++P+ +Y+ LK K + L RSI
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSI-------------------- 449
Query: 197 GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFY--IG--LRQRRATGQEY 252
+ Y +P +D FY IG L+ E+
Sbjct: 450 --------VDHYNIPKTFDSDDLIPPYLD----------QYFYSHIGHHLKN-----IEH 486
Query: 253 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGV 312
E + F V F DF F L K + +D AS +
Sbjct: 487 PERMTLF---------RMV---FLDF----RF-LEQK------IRHDSTAWNASGSILNT 523
Query: 313 VAALKLIGGTLAEH-----RFL-----FLGAGEAGTGIAE---LIALEISKQTKAPVEET 359
+ LK + ++ R + FL E ++ L+ + + + +A EE
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 360 RKKI 363
K++
Sbjct: 584 HKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 52/381 (13%), Positives = 118/381 (30%), Gaps = 114/381 (29%)
Query: 224 VDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE-----FMSAVKQNYGEKVLI--QFE 276
+ L+ F+ L ++ Q++ E + MS +K + ++ +
Sbjct: 55 IMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 277 DFAN--HNAFELLAKYG----------TTHLVFNDDIQGTASVVLAGVVAALK--LIGGT 322
+ + +N ++ AKY L+ +++ +V++ GV+ + K +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 323 LAEHRFL-------F-LGAGEAGTGIAELIALE-----ISKQTKAPVEETRKKICLVDSK 369
++ F L + L L+ I + + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK------ 224
Query: 370 GLIVSSRKDSLQHFKKPWAHEHEPVNNL--LDAV---KVIKP-----TILIGSSGVGRTF 419
L + S + L+ K +E N L L V K IL+ T
Sbjct: 225 -LRIHSIQAELRRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKILL------TTR 273
Query: 420 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS---GSPFDPFEYNG 476
K+V + +++ + L + T T + +++ P D
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT----------LTPDEVKSLLLKYLDCRPQD------ 317
Query: 477 KVFVPGQANNAYIFPGFGLGLVIS--GAIRVHDDM----------------LLAAS-EAL 517
+P + P +S + D + ++ +S L
Sbjct: 318 ---LPREVLT--TNP-----RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 518 AKQVTEENFEKGLIYPPFSNI 538
+ F++ ++PP ++I
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 6e-04
Identities = 49/333 (14%), Positives = 96/333 (28%), Gaps = 95/333 (28%)
Query: 248 TGQ---EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGT 304
TG+ +Y ++L F A N+ K +D +L+K H++ + D
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPK----SILSKEEIDHIIMSKD---- 59
Query: 305 ASVVLAGVVAALKLIGGTLAE------HRFLFLGAGEAGTGIA---ELIALEISKQTKAP 355
V+ + TL +F+ + + + I + + P
Sbjct: 60 -------AVSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQP 105
Query: 356 VEETRKKICLVDSKGLIVSSRKDSL----QHFKKPWAHEHEPVNNLLDAVKVIKPT---I 408
TR I ++D L Q F K +P L A+ ++P +
Sbjct: 106 SMMTRMYI-----------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT---SQSECTAEEA---------YTW 456
+ G G G K + + K + + + C + E Y
Sbjct: 155 IDGVLGSG----KTWVALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 457 SKGRAIFASGSPFDPFEYNG------KVFVPGQANNAY----------IFPGFGLG---L 497
+ S + ++ N + F L L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 498 VISGAIRVHDDMLLAASEALAKQVTEENFEKGL 530
+ + +V D + S A ++ ++ L
Sbjct: 270 LTTRFKQVTDFL----SAATTTHISLDHHSMTL 298
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| 1gq2_A | 555 | Malic enzyme; oxidoreductase, pigeon liver, NADP-d | 100.0 | |
| 1pj3_A | 564 | NAD-dependent malic enzyme, mitochondrial; oxidati | 100.0 | |
| 1o0s_A | 605 | NAD-ME, NAD-dependent malic enzyme; oxidoreductase | 100.0 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 100.0 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 100.0 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 100.0 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 100.0 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.87 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.82 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.43 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.88 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.79 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.3 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.06 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.63 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.51 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 96.49 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 96.48 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 96.28 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.28 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 96.11 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.11 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.85 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 95.78 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.74 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.72 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 95.72 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.61 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.45 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.41 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.38 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.36 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.16 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 95.15 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.1 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 94.85 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.76 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.75 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 94.72 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 94.47 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 94.44 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 94.44 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 94.31 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.25 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 93.77 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.54 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 93.53 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.36 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 93.31 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 93.27 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.23 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 93.22 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 93.2 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 93.17 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 93.14 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 93.13 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 93.12 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 93.12 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 93.1 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 93.08 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 92.97 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 92.81 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 92.72 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 92.65 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 92.45 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 92.4 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 92.26 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 92.22 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 92.08 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 92.06 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.9 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 91.77 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 91.77 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 91.71 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 91.62 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 91.6 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 91.58 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 91.55 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 91.55 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 91.52 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 91.45 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.31 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 91.27 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 91.09 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 90.92 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 90.77 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 90.72 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 90.68 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 90.57 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 90.52 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 90.45 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 90.43 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 90.21 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 90.18 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 90.05 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 90.0 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.98 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 89.97 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 89.95 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.92 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 89.81 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 89.59 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 89.4 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 89.39 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 89.19 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 88.96 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 88.92 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 88.88 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 88.86 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 88.85 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 88.83 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 88.8 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 88.79 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 88.72 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 88.7 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 88.69 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 88.6 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.53 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 88.26 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 88.13 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 88.04 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 88.03 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 87.95 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 87.92 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 87.79 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 87.71 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 87.69 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 87.64 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.61 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 87.59 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 87.38 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 87.32 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 87.29 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 87.28 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 87.11 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 87.05 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 86.96 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 86.84 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 86.82 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 86.79 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 86.79 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 86.59 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 86.55 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 86.39 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 86.29 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 86.21 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 86.21 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 86.2 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 86.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 85.75 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 85.55 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 85.37 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 85.26 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 85.26 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 84.7 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 84.59 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 84.44 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 84.41 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 84.2 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 84.17 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 83.88 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 83.81 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 83.79 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 83.78 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 83.23 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 83.2 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 82.88 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 82.7 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 82.59 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 82.53 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 82.38 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 82.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 81.86 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 81.65 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 81.62 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 81.6 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 81.59 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 81.58 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 81.47 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 81.38 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 81.13 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 80.96 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 80.63 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 80.59 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 80.58 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 80.58 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 80.31 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 80.17 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 80.14 |
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-205 Score=1648.84 Aligned_cols=538 Identities=52% Similarity=0.921 Sum_probs=529.8
Q ss_pred ccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhcccc
Q 007904 46 TISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNV 125 (585)
Q Consensus 46 ~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~~ 125 (585)
|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++++|+||+||++||++||+||||++++|+
T Consensus 3 G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~~~ 82 (555)
T 1gq2_A 3 GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTSDI 82 (555)
T ss_dssp TTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHTH
T ss_pred hhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCcceeeehhhHhhhH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhhH
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKL 205 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGKl 205 (585)
+|+|||+||||||++|++||+|||+|+|+|+|++|+|+++++++|||.++|++||||||||||||||||++||||||||+
T Consensus 83 ~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl 162 (555)
T 1gq2_A 83 ERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKL 162 (555)
T ss_dssp HHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHH
T ss_pred HHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH
Q 007904 206 ALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 285 (585)
Q Consensus 206 ~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~ 285 (585)
+|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+++|||+++||||||+++|||+
T Consensus 163 ~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~af~ 242 (555)
T 1gq2_A 163 ALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFR 242 (555)
T ss_dssp HHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHH
T ss_pred HHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEE
Q 007904 286 LLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 365 (585)
Q Consensus 286 lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~l 365 (585)
||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|+|||++||||
T Consensus 243 il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~-G~~~eeA~~~i~~ 321 (555)
T 1gq2_A 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAIKRIWM 321 (555)
T ss_dssp HHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHH-TCCHHHHHTTEEE
T ss_pred HHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHc-CCChHHHhCcEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred EcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 366 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 366 vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
||++|||+++|. +|+++|++||++.++.++|+|||+.+|||||||+|+++|+||||||++||++|+|||||||||||++
T Consensus 322 ~D~~Gli~~~r~-~l~~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~ 400 (555)
T 1gq2_A 322 VDSKGLIVKGRA-SLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSK 400 (555)
T ss_dssp EETTEECBTTCS-SCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred EECCCeeeCCCC-CchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCc
Confidence 999999999996 4999999999987667899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhccccCcEEEecCCCCCccee-CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcc
Q 007904 446 SECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 524 (585)
Q Consensus 446 ~E~tpeda~~wt~Grai~AsGSPf~pv~~-~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~ 524 (585)
+||+||||++||+|+|||||||||+||+| +||+++||||||+|+|||||||+++++|++|||+|+++||++||++++++
T Consensus 401 aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~liFPGi~~Gal~~~A~~Itd~M~~aAA~alA~~v~~~ 480 (555)
T 1gq2_A 401 AECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEE 480 (555)
T ss_dssp CSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCCHH
T ss_pred cCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEeccccccceeeccchhhhhHhcCCeECCHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007904 525 NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585 (585)
Q Consensus 525 ~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~~ 585 (585)
++..+.|||++++||+||.+||.||+++|+++|+|+..+.|+|+.+|++++||+|+|++++
T Consensus 481 ~~~~~~i~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~~~~P~Y~~~~ 541 (555)
T 1gq2_A 481 NLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCFV 541 (555)
T ss_dssp HHHHTCSSCCGGGHHHHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHTTSCCCSCCCCS
T ss_pred cCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhccCCCCCCcc
Confidence 9999999999999999999999999999999999988788899999999999999999863
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-204 Score=1645.22 Aligned_cols=539 Identities=50% Similarity=0.904 Sum_probs=529.9
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
.|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++++|+||+||++||++||+||||++++|
T Consensus 4 ~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~~ 83 (564)
T 1pj3_A 4 KGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDD 83 (564)
T ss_dssp CSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred chHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcccceeehhhhhhC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+|||+||||||++|++||+|||+|+|+|||++|+|+|+++|+|||.++|++||||||||||||||||++||+|||||
T Consensus 84 ~~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i~~~l~n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvGK 163 (564)
T 1pj3_A 84 IESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGK 163 (564)
T ss_dssp HHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHH
T ss_pred HHHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHHHHHHHhCCCCCceEEEEEcccccccCCCCCCCcccceehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+++|||+++||||||+++|||
T Consensus 164 l~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~af 243 (564)
T 1pj3_A 164 LCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAF 243 (564)
T ss_dssp HHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHH
T ss_pred HHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 285 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|+|||++|||
T Consensus 244 ~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~-Gl~~eeA~~~i~ 322 (564)
T 1pj3_A 244 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVEN-GLSEQEAQKKIW 322 (564)
T ss_dssp HHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHT-TCCHHHHHHTEE
T ss_pred HHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHc-CCChHHhhCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
|||++|||+++|.++|+++|++||++.++. ++|+|||+.+|||||||+|+++|+||||||++|+++|+||||||||||
T Consensus 323 ~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 402 (564)
T 1pj3_A 323 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNP 402 (564)
T ss_dssp EEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred EEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 999999999999435999999999987665 799999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCHHHHhccccCcEEEecCCCCCccee-CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007904 443 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 443 t~~~E~tpeda~~wt~Grai~AsGSPf~pv~~-~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
|+++||+||||++||+|+|||||||||+||+| +||+++||||||+|+|||||||+++++|++|||+|+++||++||+++
T Consensus 403 t~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~G~~~~pnQ~NN~liFPGi~~Gal~~~A~~Itd~M~~aAA~aLA~~v 482 (564)
T 1pj3_A 403 TAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 482 (564)
T ss_dssp GGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHTTC
T ss_pred CCccCcCHHHHHhhccCCEEEEeCCCCCceeecCCceecccccceeeeccchhhhhHhcCCeECCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCC
Q 007904 522 TEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584 (585)
Q Consensus 522 ~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~ 584 (585)
+++++..+.|||+++++|+||.+||.||+++|+++|+|+..+.|+|+.+|++++||+|+|+++
T Consensus 483 ~~~~~~~~~i~P~~~~~r~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~~~~p~Y~~~ 545 (564)
T 1pj3_A 483 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSL 545 (564)
T ss_dssp CHHHHHTTCSSCCGGGHHHHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHHTCCCCSCCCC
T ss_pred ccccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhhCCCCCCc
Confidence 999999999999999999999999999999999999998778889999999999999999986
|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-204 Score=1650.37 Aligned_cols=538 Identities=47% Similarity=0.858 Sum_probs=530.0
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
.|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++++|+||+||++||++||+||||++++|
T Consensus 38 ~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfyrll~~~ 117 (605)
T 1o0s_A 38 RSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDH 117 (605)
T ss_dssp CHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred chHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHhhcccchhhhhhhhhC
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCc--chHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccch
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 202 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~--g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 202 (585)
++|+|||+||||||++|++||+|||+|+|+|||++|+ |+++++|+|||.++|++||||||||||||||||++||||||
T Consensus 118 ~~e~lpivYTPtVg~ac~~~s~i~r~p~g~yis~~d~~~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipv 197 (605)
T 1o0s_A 118 VKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPV 197 (605)
T ss_dssp HHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHH
T ss_pred HHHhCCeeeCccHHHHHHHHHHHhcChHhhhccccCcccchHHHHHhcCCCCCceEEEEEccccceecCCCCCCcCccee
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCch
Q 007904 203 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 282 (585)
Q Consensus 203 GKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~ 282 (585)
||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+++|||+++||||||+++|
T Consensus 198 GKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG~r~~Rv~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p~ 277 (605)
T 1o0s_A 198 GKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPN 277 (605)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHH
T ss_pred eHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccCcCCCCCChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 283 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 283 af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|+|||+++
T Consensus 278 af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~-Gl~~eeA~~~ 356 (605)
T 1o0s_A 278 AFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNE-GISKEEACNR 356 (605)
T ss_dssp HHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTT-TCCHHHHHHT
T ss_pred HHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHc-CCChhhhhCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 9999999999
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
|||||++|||+++|. +|+++|++||++.++.++|+|||+.+|||||||+|+++|+||||||++||++|+||||||||||
T Consensus 357 i~~vD~~Gli~~~r~-~l~~~k~~~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 435 (605)
T 1o0s_A 357 IYLMDIDGLVTKNRK-EMNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNP 435 (605)
T ss_dssp EEEEETTEECBTTCS-SCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred EEEEECCCceeCCCC-CchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 999999999999996 4999999999987667899999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007904 443 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 522 (585)
Q Consensus 443 t~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 522 (585)
|+++||+||||++||+|+|||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+|+++||++||++++
T Consensus 436 t~~aE~~pe~a~~~t~G~aivATGspF~pV~~~Grs~~pnQ~NN~liFPGi~lGal~~~A~~Itd~M~~aAA~aLA~~v~ 515 (605)
T 1o0s_A 436 TSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVT 515 (605)
T ss_dssp GGGCSSCHHHHHHTTTSCCEEEESSCCCCEEETTEEECCEECCGGGTHHHHHHHHHHHTBSCCCHHHHHHHHHHHHHTCC
T ss_pred CCCcCcCHHHHHhhccCCEEEEECCCCCCeeECCEEeccccccceeeccchhhhhhhcCCeEcCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCC
Q 007904 523 EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584 (585)
Q Consensus 523 ~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~ 584 (585)
++++..+.|||++++||+||.+||.||+++|+++|+|+..+.|+|+.+|++++||+|+|+++
T Consensus 516 ~~~~~~~~i~P~~~dir~vs~~VA~AVa~~A~~~GvA~~~~~~~d~~~~i~~~~w~P~Y~~~ 577 (605)
T 1o0s_A 516 EDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEEL 577 (605)
T ss_dssp HHHHTTTCCSCCGGGHHHHHHHHHHHHHHHHHHTTCBCSSSCCSCHHHHHHHHSCCCSCCCC
T ss_pred cccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhccCCCCCcc
Confidence 99999999999999999999999999999999999998878889999999999999999986
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-121 Score=979.60 Aligned_cols=380 Identities=32% Similarity=0.409 Sum_probs=345.0
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCC-cccccchhh
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGC-QGMGIPVGK 204 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~GmgI~iGK 204 (585)
.+.|||+||||||++|++|+ +|++++++++.+| ++|+|||||||||||||+|+ +||||||||
T Consensus 58 ~~dLslaYTPgVa~~c~~i~-------------~dp~~~~~yt~kg----n~VaVVTDG~aILGLGDiG~~agmpImeGK 120 (487)
T 3nv9_A 58 FNWFNAYYTPGVSRISTNIR-------------DNNDSSLFYSLRG----NFVGVVSDSTRVLGDGDVTPPGGLGVMEGK 120 (487)
T ss_dssp GGGHHHHSTTTHHHHHHHHH-------------HCGGGHHHHSGGG----GEEEEEECSSSBGGGBCCCGGGGHHHHHHH
T ss_pred HHHCeeeeCcchHHHHHHHH-------------hChHHHhhhcccC----CEEEEEEcCceeeeccccccccCCchhhhH
Confidence 34599999999999999986 4677778777666 48999999999999999999 599999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||| |||||||+||+| +++|| |+| .|||+++.++||. ||||||++||||
T Consensus 121 l~Lyk~~aGId---~lPI~LD~gt~~--~~~d~---------------def-ve~v~~~~P~fG~---InlEDf~ap~af 176 (487)
T 3nv9_A 121 ALLMKYLGGID---AVPICIDSKNKE--GKNDP---------------DAV-IEFVQRIQHTFGA---INLEDISQPNCY 176 (487)
T ss_dssp HHHHHHHHCCE---EEEEECCCBCTT--SCBCH---------------HHH-HHHHHHHGGGCSE---EEECSCCTTHHH
T ss_pred HHHHHhcCCCc---eeeeEEeCCCcc--ccCCH---------------HHH-HHHHHHhCCCCCe---ecHhhcCCchHH
Confidence 99999999999 999999999755 45664 343 3566677777766 999999999999
Q ss_pred HHHHHHcC--CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 285 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 285 ~lL~ryr~--~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
+||+|||+ +||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+. .|+|+ ++
T Consensus 177 ~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~-----~G~~~----~~ 247 (487)
T 3nv9_A 177 KILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVT-----AGADP----KK 247 (487)
T ss_dssp HHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHH-----TTCCG----GG
T ss_pred HHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHH-----cCCCc----cc
Confidence 99999998 799999999999999999999999999999999999999999999999999985 49986 89
Q ss_pred EEEEcCCCcccCCCccCC-----chhchhhcccc--CCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCc
Q 007904 363 ICLVDSKGLIVSSRKDSL-----QHFKKPWAHEH--EPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKP 434 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l-----~~~k~~fa~~~--~~~~~L~e~v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~erP 434 (585)
|||||++|||+++|.+ | .++|.+||++. +...+|+|||+. +|||||+|++ +|+||||||++|+ +||
T Consensus 248 i~l~D~~Gli~~~R~~-l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~--adVlIG~S~~~pg~ft~e~V~~Ma---~~P 321 (487)
T 3nv9_A 248 IVMFDSKGSLHNGRED-IKKDTRFYRKWEICETTNPSKFGSIAEACVG--ADVLISLSTPGPGVVKAEWIKSMG---EKP 321 (487)
T ss_dssp EEEEETTEECCTTCHH-HHHCGGGHHHHHHHHHSCTTCCCSHHHHHTT--CSEEEECCCSSCCCCCHHHHHTSC---SSC
T ss_pred EEEEeccccccCCcch-hhhhcccHHHHHHHHhcccccCCCHHHHHhc--CCEEEEecccCCCCCCHHHHHhhc---CCC
Confidence 9999999999999954 6 34667888764 246799999998 7999999976 7999999999996 899
Q ss_pred EEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007904 435 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 514 (585)
Q Consensus 435 IIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA 514 (585)
||||||||| +||+||||++ +|+||||||| +++|||+||+|+|||||||++++||++|||+|+++||
T Consensus 322 IIFaLSNPt--pEi~pe~A~~--~G~aIvATGr----------sd~PnQ~NN~liFPGI~~Gal~~~A~~Itd~M~~AAA 387 (487)
T 3nv9_A 322 IVFCCANPV--PEIYPYEAKE--AGAYIVATGR----------GDFPNQVNNSVGFPGILKGALIVRARKITDNMAIAAS 387 (487)
T ss_dssp EEEECCSSS--CSSCHHHHHH--TTCSEEEESC----------TTSSSBCCGGGTHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred EEEECCCCC--ccCCHHHHHH--hCCEEEEECC----------CCCcccCcceeEcchhhHHHHHcCCcccCHHHHHHHH
Confidence 999999999 7999999998 5999999994 6789999999999999999999999999999999999
Q ss_pred HHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCC-CCchhHHHHHHhCC
Q 007904 515 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRL-PRPQNLVKCAESCM 576 (585)
Q Consensus 515 ~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~-~~~~dl~~~i~~~m 576 (585)
++||++++++++.+++|||++++ ++||.+||.||+++|+++|+|+.. ++++++.+++++++
T Consensus 388 ~ALA~~v~~~~l~~~~i~P~~~d-~~Vs~~VA~AVa~aA~~~GvA~~~~~~~~~~~~~~~~~~ 449 (487)
T 3nv9_A 388 RALAEFAEKRGINPDNIIGTMDE-PGIFPKEAADVAMQAIKDGVARVTDLTWQQVYDIAEHDI 449 (487)
T ss_dssp HHHHHHHHHTCCBTTBCSCCTTC-TTHHHHHHHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHhhCCcccCCCCceeCCccc-cchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999 799999999999999999999976 67889999998765
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-113 Score=905.42 Aligned_cols=361 Identities=29% Similarity=0.420 Sum_probs=334.2
Q ss_pred hhhhhhhcccccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCC
Q 007904 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 194 (585)
Q Consensus 115 ~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 194 (585)
.+++++.+++.+ +|||+||||||++|++|+ + |+++++ +|+.++++|+|||||+|||||||+|
T Consensus 23 ~~~~~~~~~~~~-~l~i~YtP~V~~~c~~i~---~----------~p~~v~----~~t~~~~~V~VvTdG~~iLGLGD~G 84 (398)
T 2a9f_A 23 EVQPKVDIKTKH-DLSIAYTPGVASVSSAIA---K----------DKTLAY----DLTTKKNTVAVISDGTAVLGLGDIG 84 (398)
T ss_dssp EEEESSCCSSHH-HHHHHSTTTTHHHHHHHH---H----------CGGGHH----HHSGGGTEEEEEECSSSCTTSCCCC
T ss_pred EEEEecccCCHH-HCeEEECchHHHHHHHHH---h----------CHHHHH----HhcccCCEEEEEECCccccCCCCcc
Confidence 467777788765 589999999999999987 3 455555 7888999999999999999999999
Q ss_pred Cc-ccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCc-ee
Q 007904 195 CQ-GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VL 272 (585)
Q Consensus 195 ~~-GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~l 272 (585)
++ |||||+||+.||++||||| |+|||||+|| +||||++|++.| |. +.
T Consensus 85 ~~aG~pI~eGK~~Lf~~~agid---~~pi~Ldv~~---------------------------~dEfv~~v~~~~-p~F~~ 133 (398)
T 2a9f_A 85 PEAAMPVMEGKAALFKAFAGVD---AIPIVLDTKD---------------------------TEEIISIVKALA-PTFGG 133 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCE---EEEEECCCCC---------------------------HHHHHHHHHHHG-GGCSE
T ss_pred cccCCcchhCHHHHHHhccCCc---eeeeEeCCCC---------------------------HHHHHHHHHHcC-CceeE
Confidence 98 9999999999999999999 9999999996 799999999999 88 89
Q ss_pred eeeecCCCchHHHHHHHHcC--CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 273 IQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 273 Iq~EDf~~~~af~lL~ryr~--~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
||||||+++|||++|+|||+ ++|||||||||||+|++||++||+|++|++++|+||||+|||+||+|||++++.+
T Consensus 134 I~lED~~~p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~--- 210 (398)
T 2a9f_A 134 INLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAA--- 210 (398)
T ss_dssp EEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHH---
T ss_pred eccccCCChHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHc---
Confidence 99999999999999999997 4999999999999999999999999999999999999999999999999999875
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHH
Q 007904 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM 427 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~M 427 (585)
|+ ++||++|++|||+++|.++|+++|++||++... ..+|+|+|+. +|+|||+|+ ||+||+|+|++|
T Consensus 211 --Ga------~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~--ADV~IG~Sa-pgl~T~EmVk~M 279 (398)
T 2a9f_A 211 --GA------TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG--ADIFIGVSA-PGVLKAEWISKM 279 (398)
T ss_dssp --TC------CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHT--TCSEEECCS-TTCCCHHHHHTS
T ss_pred --CC------CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhcc--CCEEEecCC-CCCCCHHHHHhh
Confidence 75 899999999999999933599999999986432 4689999998 899999999 899999999999
Q ss_pred HcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCH
Q 007904 428 ASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHD 507 (585)
Q Consensus 428 a~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd 507 (585)
+ ++|||||||||| |||+||||++| |+|||||| |+++|||+||+|+|||||+|++++||++|||
T Consensus 280 a---~~pIIfalsNPt--~E~~pe~a~~~--g~~i~atG----------rs~~p~Q~NN~~~FPgi~~Gal~~~a~~I~d 342 (398)
T 2a9f_A 280 A---ARPVIFAMANPI--PEIYPDEALEA--GAYIVGTG----------RSDFPNQINNVLAFPGIFRGALDARAKTITV 342 (398)
T ss_dssp C---SSCEEEECCSSS--CSSCHHHHHTT--TCSEEEES----------CTTSSSBCCGGGTHHHHHHHHHHHTCSSCCH
T ss_pred C---CCCEEEECCCCC--ccCCHHHHHHh--CCeEEEeC----------CCCCCCcCCceeEcchHHHHHHHcCCcCCCH
Confidence 8 899999999999 89999999999 99999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007904 508 DMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 556 (585)
Q Consensus 508 ~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~ 556 (585)
+|+++||++||++++++++.+++|||++++ |+||.+||.||+++|++.
T Consensus 343 ~m~~aAa~alA~~~~~~~~~~~~i~P~~~~-~~v~~~VA~aVa~~A~~~ 390 (398)
T 2a9f_A 343 EMQIAAAKGIASLVPDDALSTTNIIPDAFK-EGVAEIVAKSVRSVVLKS 390 (398)
T ss_dssp HHHHHHHHHHHHTCSSCSSCCSCCSCSSTT-HHHHHHHTTTTCCCCC--
T ss_pred HHHHHHHHHHHhcCCcccCCCCccCCCCCc-chhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 999999999999999764
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-107 Score=862.10 Aligned_cols=354 Identities=31% Similarity=0.442 Sum_probs=332.1
Q ss_pred hhhhhhhcccccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCC
Q 007904 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 194 (585)
Q Consensus 115 ~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 194 (585)
..++++.+++.++ |||+||||||++|++|+ ++| ++++ +|+.++++|+|||||||||||||+|
T Consensus 27 ~~~~~~~~~~~~~-l~i~YtP~V~~~c~~~~---~~p----------~~v~----~~t~~~~~V~VvTdg~~vLGlGD~G 88 (388)
T 1vl6_A 27 RTALPVEKVDRET-LSLLYTPGVADVARACA---EDP----------EKTY----VYTSRWNTVAVVSDGSAVLGLGNIG 88 (388)
T ss_dssp EEECSCSCCCHHH-HHHHSTTTHHHHHHHHH---HCG----------GGHH----HHSGGGGEEEEEECSTTBTTTBSCC
T ss_pred EEEEeeecCCHHH-CeEEECchHHHHHHHHH---hCH----------HHHH----hhcccCCeEEEEECCccccCCCccc
Confidence 6788899998886 89999999999999987 455 4444 7899999999999999999999999
Q ss_pred Cc-ccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCc-ee
Q 007904 195 CQ-GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VL 272 (585)
Q Consensus 195 ~~-GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~l 272 (585)
++ |||||+||+.||++||||| ++|||||+|| +||||++|++.| |. ..
T Consensus 89 ~~ag~pI~egK~~Lf~~~agid---~~pi~ldv~~---------------------------~dE~v~~vk~~~-p~f~~ 137 (388)
T 1vl6_A 89 PYGALPVMEGKAFLFKAFADID---AFPICLSESE---------------------------EEKIISIVKSLE-PSFGG 137 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCE---EEEEECSCCC---------------------------HHHHHHHHHHTG-GGCSE
T ss_pred cccCCcchhCHHHHHHhccCCc---eEeEEeCCCC---------------------------HHHHHHHHHHcC-CcceE
Confidence 97 9999999999999999999 9999999996 799999999999 87 88
Q ss_pred eeeecCCCchHHHHHHHHcC--CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 273 IQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 273 Iq~EDf~~~~af~lL~ryr~--~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
||||||+++|||++|+|||+ +||||||||||||+|++||++||+|++|++++++||||+|||+||+++|++|+..
T Consensus 138 i~lED~~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~--- 214 (388)
T 1vl6_A 138 INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDL--- 214 (388)
T ss_dssp EEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHH---
T ss_pred eCHhhcCCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhC---
Confidence 99999999999999999997 5999999999999999999999999999999999999999999999999999874
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCccC-CchhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHH
Q 007904 351 QTKAPVEETRKKICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 426 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~~-l~~~k~~fa~~~~~---~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~ 426 (585)
|. ++||++|++|||+.+|.+. |+++|++||++... ..+|+|+|+. +|+|||+|+ +|+||+|+|+.
T Consensus 215 --G~------~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~--ADVlIG~Sa-p~l~t~emVk~ 283 (388)
T 1vl6_A 215 --GV------KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEG--ADFFIGVSR-GNILKPEWIKK 283 (388)
T ss_dssp --TC------CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTT--CSEEEECSC-SSCSCHHHHTT
T ss_pred --CC------CeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHcc--CCEEEEeCC-CCccCHHHHHh
Confidence 73 8999999999999999643 99999999987432 4689999998 899999999 79999999999
Q ss_pred HHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccC
Q 007904 427 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 506 (585)
Q Consensus 427 Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~It 506 (585)
|+ ++||||+||||| |||+||||++| |+|||||| |+++|||+||+|+|||||+|++++||+ ||
T Consensus 284 Ma---~~pIIfalSNPt--~E~~p~~a~~~--g~~i~atG----------r~~~p~Q~NN~~~FPgi~~Gal~~~a~-i~ 345 (388)
T 1vl6_A 284 MS---RKPVIFALANPV--PEIDPELAREA--GAFIVATG----------RSDHPNQVNNLLAFPGIMKGAVEKRSK-IT 345 (388)
T ss_dssp SC---SSCEEEECCSSS--CSSCHHHHHHT--TCSEEEES----------CTTSSSBCCGGGTHHHHHHHHHHHCSC-CC
T ss_pred cC---CCCEEEEcCCCC--CCCCHHHHHHh--cCeEEEeC----------CCCCCCcCCceeEcchHhHHHHhcCCc-cC
Confidence 97 799999999999 89999999999 99999999 689999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHH
Q 007904 507 DDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKA 553 (585)
Q Consensus 507 d~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A 553 (585)
|+|+++||++||+++ ++.+++|||++++ |+||.+||.||+++|
T Consensus 346 ~~m~~aAa~alA~~~---~~~~~~i~P~~~~-~~v~~~vA~aVa~~A 388 (388)
T 1vl6_A 346 KNMLLSAVEAIARSC---EPEPERIIPEAFD-MKVHLNVYTAVKGSA 388 (388)
T ss_dssp HHHHHHHHHHHHHTS---CCBTTBSSCCTTC-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhh---ccCCCcccCCCCc-chhhHHHHHHHHhhC
Confidence 999999999999999 6789999999999 999999999999875
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-87 Score=714.50 Aligned_cols=385 Identities=30% Similarity=0.433 Sum_probs=349.5
Q ss_pred hhhhhhhcccccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCC
Q 007904 115 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 194 (585)
Q Consensus 115 ~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 194 (585)
..++++.+++.+ +|||+||||||++|++|+ +|++++++ |+.++|+++|||||+|||||||+|
T Consensus 21 ~~~~~~~~~~~~-~l~~~YtP~v~~~c~~~~-------------~~~~~~~~----~~~~~~~v~vvtdgt~ilGlG~iG 82 (439)
T 2dvm_A 21 EVIPKVSLESRE-ELTLAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLVAVVSDGSRILGLGNIG 82 (439)
T ss_dssp EEEESSCCCSHH-HHHHHSTTTTHHHHHHHH-------------HCGGGHHH----HSSGGGEEEEEECSTTBTTTBCCC
T ss_pred EEEEeeccCCHH-HCeeEECchhHHHHHHHH-------------HCHHHHHh----hcccCcEEEEEECCCeEeccccee
Confidence 356677777776 589999999999999998 37777774 888899999999999999999999
Q ss_pred Cc-ccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCc-ee
Q 007904 195 CQ-GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VL 272 (585)
Q Consensus 195 ~~-GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~l 272 (585)
.+ ++|+++||++||++||||| ++|++||+. | .|+|+++|+..+ |+ ..
T Consensus 83 ~hS~sPvmh~ka~lf~~~gGid---~~yi~ldv~--------d-------------------~de~~~~v~~l~-~~f~G 131 (439)
T 2dvm_A 83 PLAGLPVMEGKALLFKRFGGVD---AFPIMIKEQ--------E-------------------PNKFIDIVKAIA-PTFGG 131 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCE---EEEEECSCC--------S-------------------HHHHHHHHHHTG-GGCSE
T ss_pred ccccCHHHHHHHHHHHHhCCCC---CeeeeeecC--------C-------------------HHHHHHHHHHhC-ccCcE
Confidence 97 8999999999999999999 999999992 1 578888888766 55 56
Q ss_pred eeeecCCCchHHHHHHHHcC--CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 273 IQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 273 Iq~EDf~~~~af~lL~ryr~--~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
||||||+.||||++|++|++ ++|+||||+||||.+.++|+++|++..|++++++|+||+|||+||.+|+.+|.+.
T Consensus 132 invED~T~P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~~--- 208 (439)
T 2dvm_A 132 INLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEA--- 208 (439)
T ss_dssp EEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHHT---
T ss_pred EEEEeCCCchHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHHc---
Confidence 99999999999999999987 7999999999999999999999999999999999999999999999999999863
Q ss_pred hcCCChhhhcCeEEEEc----CCCcccCCCccC---CchhchhhccccC---CCCCHHHHhcccCCcEEEeccCCC-CCC
Q 007904 351 QTKAPVEETRKKICLVD----SKGLIVSSRKDS---LQHFKKPWAHEHE---PVNNLLDAVKVIKPTILIGSSGVG-RTF 419 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD----~~GLi~~~r~~~---l~~~k~~fa~~~~---~~~~L~e~v~~vkptvLIG~S~~~-g~F 419 (585)
|+++ ++||++| ++||++++ +. +.+++.+|++... ...+|.|+++. +|+|||+|+.+ |+|
T Consensus 209 --G~~~----~~I~vvd~~~~R~G~~~~a--~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~--aDVlInaT~~~~G~~ 278 (439)
T 2dvm_A 209 --GVKP----ENVRVVELVNGKPRILTSD--LDLEKLFPYRGWLLKKTNGENIEGGPQEALKD--ADVLISFTRPGPGVI 278 (439)
T ss_dssp --TCCG----GGEEEEEEETTEEEECCTT--SCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTT--CSEEEECSCCCSSSS
T ss_pred --CCCc----CeEEEEEccCCCcCccccc--cchhHHHHHHHHHhhccccccccccHHHHhcc--CCEEEEcCCCccCCC
Confidence 8753 7899999 99999887 24 7778888887432 24689999987 89999999985 899
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHH
Q 007904 420 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVI 499 (585)
Q Consensus 420 t~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~ 499 (585)
++++++.|+ ++||||+||||+ +||++++|.+| |++++||| +++.|+|+||+|+|||||+|+++
T Consensus 279 ~~e~v~~m~---~~~iVfDLynP~--~t~~~~~A~~~--G~~ivatG----------~~ml~~Q~nn~~~FPGi~~g~l~ 341 (439)
T 2dvm_A 279 KPQWIEKMN---EDAIVFPLANPV--PEILPEEAKKA--GARIVATG----------RSDYPNQINNLLGFPGIFRGALD 341 (439)
T ss_dssp CHHHHTTSC---TTCEEEECCSSS--CSSCHHHHHHH--TCSEECBS----------CSSSSSBCCGGGTHHHHHHHHHH
T ss_pred ChHHHHhcC---CCCEEEECCCCC--CcchHHHHHHc--CCeEEcCC----------CchhHHHHHHHhcccCchHHHHh
Confidence 999999986 899999999999 89999999998 89999999 68999999999999999999999
Q ss_pred hCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 007904 500 SGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 579 (585)
Q Consensus 500 ~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P 579 (585)
+||++|||+|+++||++||++++++ ..++|||++++ |+||.+||.||+++|+++|+|+..++|+|+.+|+++.||.+
T Consensus 342 ~~a~~i~~~m~~aaa~ala~~~~~~--~~~~i~P~~~~-~~v~~~va~av~~~a~~~g~a~~~~~~~~~~~~~~~~~~~~ 418 (439)
T 2dvm_A 342 VRARTITDSMIIAAAKAIASIVEEP--SEENIIPSPLN-PIVYAREARAVAEEAMKEGVARTKVKGEWVEEHTIRLIEFY 418 (439)
T ss_dssp TTCSCCCHHHHHHHHHHHHHTSSSC--BTTBCSCCTTC-HHHHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhhCccc--cCCccCCCccc-chhhHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhhhh
Confidence 9999999999999999999999876 78999999999 99999999999999999999987777899999999999987
Q ss_pred CC
Q 007904 580 VY 581 (585)
Q Consensus 580 ~Y 581 (585)
.|
T Consensus 419 ~~ 420 (439)
T 2dvm_A 419 EN 420 (439)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-08 Score=107.15 Aligned_cols=168 Identities=11% Similarity=0.179 Sum_probs=124.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHH---------------------HHHc-------CCCeee-
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELL---------------------AKYG-------TTHLVF- 297 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL---------------------~ryr-------~~~~~F- 297 (585)
-+-++|...++..+.. ..++|+.+| |-+..=...+- .||+ -.+|+|
T Consensus 112 ~~~~ey~~~~~~~~~~--~~~~p~~il---DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~ 186 (435)
T 3gvp_A 112 ESEDDFWWCIDRCVNV--EGWQPNMIL---DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMN 186 (435)
T ss_dssp CCHHHHHHHHHHHHCB--TTBCCSEEE---ESSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSCEEE
T ss_pred CCHHHHHHHHHHHHhc--cCCCCcEEE---ecchHHHHHHHHHhHHHHhhcceeEeccchhHHHHHHHHHcCCCCCCEEE
Confidence 3567888878776542 345677665 44443222221 3443 269999
Q ss_pred ---------ccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 298 ---------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 298 ---------nDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
.|++.||+-++++|+..+ ++..|.+.+++|+|+|..|.++|+.+... |. +++++|+
T Consensus 187 vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~L~GktV~ViG~G~IGk~vA~~Lra~-----Ga-------~Viv~D~ 251 (435)
T 3gvp_A 187 VNDSVTKQKFDNLYCCRESILDGLKRT---TDMMFGGKQVVVCGYGEVGKGCCAALKAM-----GS-------IVYVTEI 251 (435)
T ss_dssp CTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECS
T ss_pred ecchhhhhhhhhhhhhHHHHHHHHHHh---hCceecCCEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEEeC
Confidence 899999999999999765 79999999999999999999999998653 74 5888887
Q ss_pred CCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCC
Q 007904 369 KGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSE 447 (585)
Q Consensus 369 ~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E 447 (585)
+.. +...|.. .-...+|.|+++. .|++|.+++..++++++.++.|. +..||+-.+++. .|
T Consensus 252 dp~------------ra~~A~~~G~~v~~Leeal~~--ADIVi~atgt~~lI~~e~l~~MK---~gailINvgrg~--~E 312 (435)
T 3gvp_A 252 DPI------------CALQACMDGFRLVKLNEVIRQ--VDIVITCTGNKNVVTREHLDRMK---NSCIVCNMGHSN--TE 312 (435)
T ss_dssp CHH------------HHHHHHHTTCEECCHHHHTTT--CSEEEECSSCSCSBCHHHHHHSC---TTEEEEECSSTT--TT
T ss_pred Chh------------hhHHHHHcCCEeccHHHHHhc--CCEEEECCCCcccCCHHHHHhcC---CCcEEEEecCCC--cc
Confidence 421 1111211 1123579999986 99999998888999999999997 789999999997 78
Q ss_pred CCHHHH
Q 007904 448 CTAEEA 453 (585)
Q Consensus 448 ~tpeda 453 (585)
+..+..
T Consensus 313 Id~~~L 318 (435)
T 3gvp_A 313 IDVASL 318 (435)
T ss_dssp BTGGGG
T ss_pred CCHHHH
Confidence 887655
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=109.82 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=105.7
Q ss_pred CCCeee----------ccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 292 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 292 ~~~~~F----------nDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
..+|+| .|++.||+-+++.|++. .++..|.+.+++|+|.|..|.++|+.+... |.
T Consensus 171 L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r---atg~~L~GktVgIiG~G~IG~~vA~~Lka~-----Ga------- 235 (436)
T 3h9u_A 171 LTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVMIAGKTACVCGYGDVGKGCAAALRGF-----GA------- 235 (436)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH---HHCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------
T ss_pred CCCceEeechhhhhhhhhccccchHHHHHHHHH---hcCCcccCCEEEEEeeCHHHHHHHHHHHHC-----CC-------
Confidence 579999 89999999999999964 579999999999999999999999998753 64
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+++++|++. .+...|. ......+|.|+++. .|++|.+++..++++++.++.|. +..||+-.|
T Consensus 236 ~Viv~D~~p------------~~a~~A~~~G~~~~sL~eal~~--ADVVilt~gt~~iI~~e~l~~MK---~gAIVINvg 298 (436)
T 3h9u_A 236 RVVVTEVDP------------INALQAAMEGYQVLLVEDVVEE--AHIFVTTTGNDDIITSEHFPRMR---DDAIVCNIG 298 (436)
T ss_dssp EEEEECSCH------------HHHHHHHHTTCEECCHHHHTTT--CSEEEECSSCSCSBCTTTGGGCC---TTEEEEECS
T ss_pred EEEEECCCh------------hhhHHHHHhCCeecCHHHHHhh--CCEEEECCCCcCccCHHHHhhcC---CCcEEEEeC
Confidence 588888742 1111121 11123589999986 99999988888999999999996 889999999
Q ss_pred CCCCcCCCCHHHHhc
Q 007904 441 NPTSQSECTAEEAYT 455 (585)
Q Consensus 441 NPt~~~E~tpeda~~ 455 (585)
++. .|+.++.+.+
T Consensus 299 Rg~--vEID~~~L~~ 311 (436)
T 3h9u_A 299 HFD--TEIQVAWLKA 311 (436)
T ss_dssp SSG--GGBCHHHHHH
T ss_pred CCC--CccCHHHHHh
Confidence 998 8999987765
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.5e-07 Score=94.85 Aligned_cols=218 Identities=18% Similarity=0.241 Sum_probs=130.2
Q ss_pred CcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCc--ccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccCc
Q 007904 160 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDE 237 (585)
Q Consensus 160 d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP 237 (585)
++..++++.++ ..+|+|.++++..+|++|.+.. |+.|+.+ ..+|. | +++|.+.+..
T Consensus 26 tP~~v~~L~~~----G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~-~~~~~-a---------diil~vk~p~------- 83 (401)
T 1x13_A 26 TPKTVEQLLKL----GFTVAVESGAGQLASFDDKAFVQAGAEIVEG-NSVWQ-S---------EIILKVNAPL------- 83 (401)
T ss_dssp CHHHHHHHHHT----TCEEEEETTTTGGGTCCHHHHHHHTCEEECG-GGGGS-S---------SEEECSSCCC-------
T ss_pred CHHHHHHHHHC----CCEEEEEECCCcccCCChHHHHHCCCEEecc-HHHhc-C---------CeEEEeCCCC-------
Confidence 45566666654 4689999999999999999875 8889888 66765 2 4677664321
Q ss_pred cccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCC-CchHHHHHHHHc-CCCeeec-cCCC----------ch
Q 007904 238 FYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA-NHNAFELLAKYG-TTHLVFN-DDIQ----------GT 304 (585)
Q Consensus 238 ~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~-~~~af~lL~ryr-~~~~~Fn-DDiQ----------GT 304 (585)
.+.++.+++ ...+|-+=..+ ++. +++.++ ..+.+|+ +.+. .+
T Consensus 84 -------------------~~~i~~l~~---~~~li~~~~~~~d~~---~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~ 138 (401)
T 1x13_A 84 -------------------DDEIALLNP---GTTLVSFIWPAQNPE---LMQKLAERNVTVMAMDSVPRISRAQSLDALS 138 (401)
T ss_dssp -------------------HHHHTTCCT---TCEEEECCCGGGCHH---HHHHHHHTTCEEEEGGGCCCSGGGGGGCHHH
T ss_pred -------------------HHHHHHhcC---CCcEEEEecCCCCHH---HHHHHHHCCCEEEEeehhhhhhhhcccchHH
Confidence 233333322 11222222221 223 333443 4677773 2222 45
Q ss_pred HHHHHHHHHHHHHHh----CC----------CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 305 ASVVLAGVVAALKLI----GG----------TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 305 aaV~lAgll~A~r~~----g~----------~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
....+|| .+|++.. ++ .+...+|+|+|+|.+|.++++++... |. +++++|++.
T Consensus 139 ~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~-----Ga-------~V~v~D~~~ 205 (401)
T 1x13_A 139 SMANIAG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRP 205 (401)
T ss_dssp HHHHHHH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCG
T ss_pred HHHHHHH-HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH
Confidence 5555665 4444432 22 25689999999999999999887642 62 588999864
Q ss_pred cccCCCccCCch------------hchhhccccCC------CCCHHHHhcccCCcEEEeccCCC-----CCCCHHHHHHH
Q 007904 371 LIVSSRKDSLQH------------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAM 427 (585)
Q Consensus 371 Li~~~r~~~l~~------------~k~~fa~~~~~------~~~L~e~v~~vkptvLIG~S~~~-----g~Ft~evi~~M 427 (585)
-..... ..+.. .+..|++.... ..+|.+.++. .|++|++...+ .+++++.++.|
T Consensus 206 ~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~--aDvVI~~~~~pg~~ap~li~~~~l~~m 282 (401)
T 1x13_A 206 EVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKE--VDIIVTTALIPGKPAPKLITREMVDSM 282 (401)
T ss_dssp GGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHH--CSEEEECCCCTTSCCCCCBCHHHHHTS
T ss_pred HHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhcC
Confidence 321100 00100 00011111000 0147777775 99999996433 67999999999
Q ss_pred HcCCCCcEEEecCCCC
Q 007904 428 ASFNEKPLILALSNPT 443 (585)
Q Consensus 428 a~~~erPIIFaLSNPt 443 (585)
. +..+|+-+|+|.
T Consensus 283 k---~g~vIVdva~~~ 295 (401)
T 1x13_A 283 K---AGSVIVDLAAQN 295 (401)
T ss_dssp C---TTCEEEETTGGG
T ss_pred C---CCcEEEEEcCCC
Confidence 6 788999999873
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.3e-05 Score=81.46 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=97.9
Q ss_pred CCCeee----------ccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 292 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 292 ~~~~~F----------nDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
-.+|+| .|...||+-.++.|+. |.+|..|...+++|+|.|..|.++|+.+... |+
T Consensus 207 L~~PvinVnds~tK~~fDn~yG~~eslvdgI~---Ratg~~L~GKTVgVIG~G~IGr~vA~~lraf-----Ga------- 271 (464)
T 3n58_A 207 LPFPAINVNDSVTKSKFDNKYGCKESLVDGIR---RGTDVMMAGKVAVVCGYGDVGKGSAQSLAGA-----GA------- 271 (464)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------
T ss_pred CCCCEEeeccHhhhhhhhhhhcchHHHHHHHH---HhcCCcccCCEEEEECcCHHHHHHHHHHHHC-----CC-------
Confidence 379999 5777999999888885 5679999999999999999999999988653 64
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+++++|++. .....+. ..-...+|.|+++. .|+++-+++..++++++.++.|. +..||.-.+
T Consensus 272 ~Viv~d~dp------------~~a~~A~~~G~~vv~LeElL~~--ADIVv~atgt~~lI~~e~l~~MK---~GAILINvG 334 (464)
T 3n58_A 272 RVKVTEVDP------------ICALQAAMDGFEVVTLDDAAST--ADIVVTTTGNKDVITIDHMRKMK---DMCIVGNIG 334 (464)
T ss_dssp EEEEECSSH------------HHHHHHHHTTCEECCHHHHGGG--CSEEEECCSSSSSBCHHHHHHSC---TTEEEEECS
T ss_pred EEEEEeCCc------------chhhHHHhcCceeccHHHHHhh--CCEEEECCCCccccCHHHHhcCC---CCeEEEEcC
Confidence 688887631 1111111 11123479999986 99999998888899999999996 788998888
Q ss_pred CCCCcCCCCHHHH
Q 007904 441 NPTSQSECTAEEA 453 (585)
Q Consensus 441 NPt~~~E~tpeda 453 (585)
+.. .|+..+..
T Consensus 335 Rgd--vEID~~aL 345 (464)
T 3n58_A 335 HFD--NEIQVAAL 345 (464)
T ss_dssp SST--TTBTCGGG
T ss_pred CCC--cccCHHHH
Confidence 876 56665444
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=5.9e-05 Score=82.33 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=100.8
Q ss_pred CCCeee----------ccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 292 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 292 ~~~~~F----------nDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
-.+|+| .|+++||+-.++.|+. |.++..|.+.+++|.|+|..|.++|+.+.. .|.
T Consensus 225 L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa-----~GA------- 289 (488)
T 3ond_A 225 LLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVVAGYGDVGKGCAAALKQ-----AGA------- 289 (488)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------
T ss_pred CCCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCcccCCEEEEECCCHHHHHHHHHHHH-----CCC-------
Confidence 379999 6889999999999886 789999999999999999888888888765 373
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
+++++|++.. + ... .+...-...++.++++. .|+++-.++..++++.+.++.|. +..||+-.++
T Consensus 290 ~Viv~D~~~~----~---a~~----Aa~~g~dv~~lee~~~~--aDvVi~atG~~~vl~~e~l~~mk---~gaiVvNaG~ 353 (488)
T 3ond_A 290 RVIVTEIDPI----C---ALQ----ATMEGLQVLTLEDVVSE--ADIFVTTTGNKDIIMLDHMKKMK---NNAIVCNIGH 353 (488)
T ss_dssp EEEEECSCHH----H---HHH----HHHTTCEECCGGGTTTT--CSEEEECSSCSCSBCHHHHTTSC---TTEEEEESSS
T ss_pred EEEEEcCCHH----H---HHH----HHHhCCccCCHHHHHHh--cCEEEeCCCChhhhhHHHHHhcC---CCeEEEEcCC
Confidence 6888887421 0 100 11111123467777765 89999999888999999999885 7889999999
Q ss_pred CCCcCCCCHHHHhcc
Q 007904 442 PTSQSECTAEEAYTW 456 (585)
Q Consensus 442 Pt~~~E~tpeda~~w 456 (585)
+. .|...++.-.|
T Consensus 354 ~~--~Ei~~~~l~~~ 366 (488)
T 3ond_A 354 FD--NEIDMLGLETH 366 (488)
T ss_dssp TT--TTBTHHHHHTS
T ss_pred CC--cccchHHHHHh
Confidence 85 78888776555
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00082 Score=70.32 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=121.6
Q ss_pred CcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCc--ccccchhhHHHHHHhcCCCCCceeeEEeccCCC-----chh
Q 007904 160 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPITVDVGTN-----NEQ 232 (585)
Q Consensus 160 d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTn-----ne~ 232 (585)
.+..++++.+. ..+|+|.++++...|+.|.... |..|..++-.++ ++.| |+|.+.+. .++
T Consensus 19 ~P~~v~~L~~~----G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~---~~ad------iil~v~~p~~~~~~~~ 85 (384)
T 1l7d_A 19 SPEVVKKLVGL----GFEVIVEQGAGVGASITDDALTAAGATIASTAAQAL---SQAD------VVWKVQRPMTAEEGTD 85 (384)
T ss_dssp CHHHHHHHHHT----TCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHH---SSCS------EEEEEECCCCGGGSCC
T ss_pred CHHHHHHHHhC----CCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhh---cCCC------EEEEecCcccccCCHH
Confidence 34556666553 5789999999999999998764 778887776665 4444 56665432 111
Q ss_pred cc----cCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCc-hHHHHHHHHcCCCeeeccCCCchHHH
Q 007904 233 LL----KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH-NAFELLAKYGTTHLVFNDDIQGTASV 307 (585)
Q Consensus 233 Ll----~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~-~af~lL~ryr~~~~~FnDDiQGTaaV 307 (585)
.+ ..-.+++.-|.- ++. +.++++.+ -|- .++.+|-+... .+. .+++|+ ...
T Consensus 86 ~i~~l~~~~~~i~~~~~~-----~~~---~~~~~~~~-~gi-~~~~~e~~~~~~~~~--------~l~~l~------~~a 141 (384)
T 1l7d_A 86 EVALIKEGAVLMCHLGAL-----TNR---PVVEALTK-RKI-TAYAMELMPRISRAQ--------SMDILS------SQS 141 (384)
T ss_dssp GGGGSCTTCEEEEECCGG-----GCH---HHHHHHHH-TTC-EEEEGGGCCCSGGGG--------GGCHHH------HHH
T ss_pred HHHhhccCCEEEEEeccc-----CCH---HHHHHHHH-CCC-EEEEecccccccccc--------ccchhh------HHH
Confidence 11 112222322221 111 11222222 111 12233222110 000 111111 111
Q ss_pred HHH---HHHHHHHHhCC----------CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccC
Q 007904 308 VLA---GVVAALKLIGG----------TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 374 (585)
Q Consensus 308 ~lA---gll~A~r~~g~----------~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~ 374 (585)
.+| +++.+.+..++ .+...+|+|+|+|.+|.+++.++.. .|. +++++|++.-
T Consensus 142 ~~ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~-----~Ga-------~V~~~d~~~~--- 206 (384)
T 1l7d_A 142 NLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKR-----LGA-------VVMATDVRAA--- 206 (384)
T ss_dssp HHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCST---
T ss_pred HHHHHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHH---
Confidence 223 55666665553 5788999999999999999988764 363 4899998632
Q ss_pred CCccCCchhc-----------------hhhccccC------CCCCHHHHhcccCCcEEEecc---C--CCCCCCHHHHHH
Q 007904 375 SRKDSLQHFK-----------------KPWAHEHE------PVNNLLDAVKVIKPTILIGSS---G--VGRTFTKEVIEA 426 (585)
Q Consensus 375 ~r~~~l~~~k-----------------~~fa~~~~------~~~~L~e~v~~vkptvLIG~S---~--~~g~Ft~evi~~ 426 (585)
+.+.+...- -.|++... ....|.+.++. .|++|.++ + .+.+++++.++.
T Consensus 207 -~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~--aDvVi~~~~~pg~~~~~li~~~~l~~ 283 (384)
T 1l7d_A 207 -TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTK 283 (384)
T ss_dssp -THHHHHHTTCEECCC-----------------------CCHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTT
T ss_pred -HHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhc
Confidence 100000000 01111100 00126777765 99999988 3 235789999999
Q ss_pred HHcCCCCcEEEecCCC
Q 007904 427 MASFNEKPLILALSNP 442 (585)
Q Consensus 427 Ma~~~erPIIFaLSNP 442 (585)
|. +..+|+-+|-+
T Consensus 284 mk---~g~vivdva~~ 296 (384)
T 1l7d_A 284 MK---PGSVIIDLAVE 296 (384)
T ss_dssp SC---TTCEEEETTGG
T ss_pred CC---CCCEEEEEecC
Confidence 96 67889988854
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00063 Score=72.68 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=72.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc--------------hhchhh
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ--------------HFKKPW 387 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~--------------~~k~~f 387 (585)
.+...||+|+|+|.+|.++|+++... |. +++++|++.-......+ +. ..+..|
T Consensus 187 ~v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga-------~V~v~D~~~~~l~~~~~-~G~~~~~~~~~~~~d~~~~~~y 253 (405)
T 4dio_A 187 TVPAAKIFVMGAGVAGLQAIATARRL-----GA-------VVSATDVRPAAKEQVAS-LGAKFIAVEDEEFKAAETAGGY 253 (405)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSTTHHHHHHH-TTCEECCCCC------------
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEcCCHHHHHHHHH-cCCceeecccccccccccccch
Confidence 36789999999999999999988653 63 68999997532111000 00 001123
Q ss_pred ccccCC------CCCHHHHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCC
Q 007904 388 AHEHEP------VNNLLDAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN-PTSQSECT 449 (585)
Q Consensus 388 a~~~~~------~~~L~e~v~~vkptvLIG~S~~-----~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~t 449 (585)
++...+ ..+|.|+++. .|++|++... +.+||+++++.|. +..||+-+|- |-...|.|
T Consensus 254 a~e~s~~~~~~~~~~l~e~l~~--aDVVI~tvlipg~~ap~Lvt~emv~~Mk---~GsVIVDvA~d~GG~~e~t 322 (405)
T 4dio_A 254 AKEMSGEYQVKQAALVAEHIAK--QDIVITTALIPGRPAPRLVTREMLDSMK---PGSVVVDLAVERGGNIEGA 322 (405)
T ss_dssp -----CHHHHHHHHHHHHHHHT--CSEEEECCCCSSSCCCCCBCHHHHTTSC---TTCEEEETTGGGTCSBTTC
T ss_pred hhhcchhhhhhhHhHHHHHhcC--CCEEEECCcCCCCCCCEEecHHHHhcCC---CCCEEEEEeCCCCCCcccc
Confidence 332111 1368899987 9999998533 4589999999996 8899999995 33445555
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0022 Score=68.03 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=67.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc------CCc---hhchhhccc---
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD------SLQ---HFKKPWAHE--- 390 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~------~l~---~~k~~fa~~--- 390 (585)
+...||+|+|+|.+|..+|+.+... |. +++++|++.-....-.+ .+. .....|++.
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga-------~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRL-----GA-------KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHH-----TC-------EEEEECSSGGGHHHHHHTTCEECCCC-------------CH
T ss_pred cCCCEEEEECchHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhH
Confidence 5789999999999999999988764 63 58999987421100000 000 000112210
Q ss_pred ---cCCCCCHHHHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 391 ---HEPVNNLLDAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 391 ---~~~~~~L~e~v~~vkptvLIG~S~~-----~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.....+|.++++. .|++|++... +.+||+++++.|. +..+|+-+|=+.
T Consensus 250 ~~~~~~~~~l~e~l~~--aDIVI~tv~iPg~~ap~Lvt~emv~~Mk---pGsVIVDvA~d~ 305 (381)
T 3p2y_A 250 AERAQQQQALEDAITK--FDIVITTALVPGRPAPRLVTAAAATGMQ---PGSVVVDLAGET 305 (381)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEEECCCCTTSCCCCCBCHHHHHTSC---TTCEEEETTGGG
T ss_pred HHHhhhHHHHHHHHhc--CCEEEECCCCCCcccceeecHHHHhcCC---CCcEEEEEeCCC
Confidence 0012368888876 9999997533 3579999999996 788999998543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.016 Score=58.02 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
.+-+|+=.++..++...+..+.+.+++|+|+|..|..+|+.+... |. +++++|+.. .+ +..
T Consensus 133 ~~~svae~a~~~~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~-----G~-------~V~~~dr~~----~~---~~~ 193 (293)
T 3d4o_A 133 NSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAAL-----GA-------KVKVGARES----DL---LAR 193 (293)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESSH----HH---HHH
T ss_pred ccHhHHHHHHHHHHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HHH
Confidence 344555555555666778899999999999999999999988642 63 688888742 11 110
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEA 453 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda 453 (585)
.+ .+--..-...+|.|+++. .|++|-.. +.+.++++.++.|. +..+|+=+|. |. ++..+.+
T Consensus 194 ~~-~~g~~~~~~~~l~~~l~~--aDvVi~~~-p~~~i~~~~l~~mk---~~~~lin~ar~~~---~~~~~~a 255 (293)
T 3d4o_A 194 IA-EMGMEPFHISKAAQELRD--VDVCINTI-PALVVTANVLAEMP---SHTFVIDLASKPG---GTDFRYA 255 (293)
T ss_dssp HH-HTTSEEEEGGGHHHHTTT--CSEEEECC-SSCCBCHHHHHHSC---TTCEEEECSSTTC---SBCHHHH
T ss_pred HH-HCCCeecChhhHHHHhcC--CCEEEECC-ChHHhCHHHHHhcC---CCCEEEEecCCCC---CCCHHHH
Confidence 00 110000012367788875 99999765 45799999999885 6678888884 44 3445444
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.14 Score=55.47 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=128.8
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHHc---CCCe-ee----------ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYG---TTHL-VF----------NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ryr---~~~~-~F----------nDDiQGTaaV~lA 310 (585)
.+..+...|...||..+.+-.||..=|-=+|++..-.. -+.+.|+ ...+ |+ ..--.-||-=+.-
T Consensus 145 ~s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~ 224 (456)
T 3r3j_A 145 KSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVY 224 (456)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHHH
Confidence 34567778888899999888899999999999864322 2455664 2221 11 1122346666777
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh----
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP---- 386 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~---- 386 (585)
++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+.+.|++|-|++.. .++..+..
T Consensus 225 ~~~~~~~~~g~~l~g~~VaVQG~GnVG~~aa~~L~e~-----Ga------kvVavsD~~G~iyd~~--Gld~~~l~~~~~ 291 (456)
T 3r3j_A 225 FAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEK-----GA------IVLTMSDSNGYILEPN--GFTKEQLNYIMD 291 (456)
T ss_dssp HHHHHHHTTTCCSTTCCEEEECCSHHHHHHHHHHHHH-----TC------CBCCEECSSCEEECTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCcEECCC--CCCHHHHHHHHH
Confidence 7888888889999999999999999999999998764 63 3345899999998754 34432221
Q ss_pred -----------hccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHH
Q 007904 387 -----------WAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEE 452 (585)
Q Consensus 387 -----------fa~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tped 452 (585)
|+...+... +-.+ +-.++.||||=+.. ++.+|++-++.+-+ +.-+||.--+| |++ +| +++
T Consensus 292 ~k~~~~~~v~~~~~~~~~a~~v~~~~-i~~~~~DI~iPcA~-~~~I~~~na~~l~~-~~ak~V~EgAN~p~T-~e--A~~ 365 (456)
T 3r3j_A 292 IKNNQRLRLKEYLKYSKTAKYFENQK-PWNIPCDIAFPCAT-QNEINENDADLFIQ-NKCKMIVEGANMPTH-IK--ALH 365 (456)
T ss_dssp HHHTSCCCGGGGGGTCSSCEEECSCC-GGGSCCSEEEECSC-TTCBCHHHHHHHHH-HTCCEEECCSSSCBC-TT--HHH
T ss_pred HHHhcCcchhhhhhcCCCceEeCCcc-ccccCccEEEeCCC-ccchhhHHHHHHHh-cCCeEEEecCCCCCC-HH--HHH
Confidence 111001100 1112 33568999998887 67999999999843 25689999998 763 55 456
Q ss_pred Hhc
Q 007904 453 AYT 455 (585)
Q Consensus 453 a~~ 455 (585)
.+.
T Consensus 366 iL~ 368 (456)
T 3r3j_A 366 KLK 368 (456)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.026 Score=60.69 Aligned_cols=178 Identities=19% Similarity=0.177 Sum_probs=126.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHHcC---C--Ceee----------ccCCCchHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT---T--HLVF----------NDDIQGTASVVL 309 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ryr~---~--~~~F----------nDDiQGTaaV~l 309 (585)
.+..|-..|...|++++.+.-||+.-|-=+|++..-.. -+.+.|+. . -.++ .+--.-||-=+.
T Consensus 126 ~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~ 205 (424)
T 3k92_A 126 MSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVT 205 (424)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHH
Confidence 44566777889999999998899888888999763222 25567742 1 0122 233455888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc-hhhc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWA 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-~~fa 388 (585)
.++-.+++..|.+|++.||+|-|.|..|...|++|.+. |. +-+.+.|++|-|++.. .|+... +.+.
T Consensus 206 ~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~e~-----Ga------kVVavsD~~G~iyd~~--GlD~~~l~~~~ 272 (424)
T 3k92_A 206 ICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDA-----GA------KVIGISDANGGLYNPD--GLDIPYLLDKR 272 (424)
T ss_dssp HHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHH-----TC------EEEEEECSSCEEECTT--CCCHHHHHHHC
T ss_pred HHHHHHHHHcCCCcccCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCcEECCC--CCCHHHHHHHH
Confidence 88899999999999999999999999999999999764 63 4467999999999764 343321 1121
Q ss_pred cccC-------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 389 HEHE-------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 389 ~~~~-------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
.... ..-+-.+ +-.++.||||=++.+ +.+|++-++.+ .-.+|.--+| |+
T Consensus 273 ~~~g~i~~~~a~~~~~~~-i~~~~~DIliPcA~~-n~I~~~~a~~l----~ak~V~EgAN~p~ 329 (424)
T 3k92_A 273 DSFGMVTNLFTDVITNEE-LLEKDCDILVPAAIS-NQITAKNAHNI----QASIVVERANGPT 329 (424)
T ss_dssp CSSSCCGGGCSCCBCHHH-HHHSCCSEEEECSCS-SCBCTTTGGGC----CCSEEECCSSSCB
T ss_pred HHhCCCCCCCcEEecCcc-ceeccccEEeecCcc-cccChhhHhhc----CceEEEcCCCCCC
Confidence 1111 1112233 345689999988875 79999988876 6788888888 65
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.034 Score=59.72 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=127.3
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH--HHHHHHHcC---C--Ceee----------ccCCCchHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---T--HLVF----------NDDIQGTASVVL 309 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~lL~ryr~---~--~~~F----------nDDiQGTaaV~l 309 (585)
.+..|-..|...|++++.+.-||+.-|-=+|++..-. --+.+.|+. . -.++ .+.-.-||-=+.
T Consensus 123 ~s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~ 202 (419)
T 3aoe_E 123 LSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGAL 202 (419)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHH
Confidence 3456677889999999999999999999999987532 225666632 1 0111 222334766667
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCchhch-hh
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PW 387 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k~-~f 387 (585)
-++-.+++..|.+|++.||+|.|.|..|...|++|.+ .| -+++ +.|++|-|++.. .++..+. .+
T Consensus 203 ~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~~a~~L~~-----~G-------akVVavsD~~G~i~dp~--Gld~~~l~~~ 268 (419)
T 3aoe_E 203 LVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAER-----LG-------MRVVAVATSMGGMYAPE--GLDVAEVLSA 268 (419)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEEETTEEEECTT--CCCHHHHHHH
T ss_pred HHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHH-----CC-------CEEEEEEcCCCeEECCC--CCCHHHHHHH
Confidence 7788889999999999999999999999999998875 36 3566 999999998764 3433221 11
Q ss_pred ccccCCCC----CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007904 388 AHEHEPVN----NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 455 (585)
Q Consensus 388 a~~~~~~~----~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~~ 455 (585)
........ +-.+ +-.++.|||+=++. ++.+|++-.+.+ .-.||.--+| |++ +| +++.+.
T Consensus 269 ~~~~g~v~~~~~~~~e-~~~~~~DVliP~A~-~n~i~~~~A~~l----~ak~V~EgAN~p~t-~~--A~~~L~ 332 (419)
T 3aoe_E 269 YEATGSLPRLDLAPEE-VFGLEAEVLVLAAR-EGALDGDRARQV----QAQAVVEVANFGLN-PE--AEAYLL 332 (419)
T ss_dssp HHHHSSCSCCCBCTTT-GGGSSCSEEEECSC-TTCBCHHHHTTC----CCSEEEECSTTCBC-HH--HHHHHH
T ss_pred HHhhCCcceeeccchh-hhccCceEEEeccc-ccccccchHhhC----CceEEEECCCCcCC-HH--HHHHHH
Confidence 11111110 1112 34578999998876 669999888877 5679999998 663 44 344444
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0086 Score=61.76 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++-.++..+.++...++||+|+| ..|.-+|.++... | .++.+++++
T Consensus 143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~hs~------------ 198 (301)
T 1a4i_A 143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWN-----N-------ATVTTCHSK------------ 198 (301)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----T-------CEEEEECTT------------
T ss_pred CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhC-----C-------CeEEEEECC------------
Confidence 45567888999999999999999999999999 5799999888752 4 358888743
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
..+|.+.++. +|++|+..+.++.+|+++|+ +.-+|+=++-|
T Consensus 199 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~ 239 (301)
T 1a4i_A 199 ------------TAHLDEEVNK--GDILVVATGQPEMVKGEWIK------PGAIVIDCGIN 239 (301)
T ss_dssp ------------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC------TTCEEEECCCB
T ss_pred ------------cccHHHHhcc--CCEEEECCCCcccCCHHHcC------CCcEEEEccCC
Confidence 1468889987 99999999999999999985 45577766654
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=96.11 E-value=0.18 Score=54.71 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=125.2
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHH---cCC-Ceee----------ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKY---GTT-HLVF----------NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ry---r~~-~~~F----------nDDiQGTaaV~lA 310 (585)
.+..|-..|...|+..+.+..||+.=|--.|++..-.- -+.+.| +.. -+|| .+.-..||-=+.-
T Consensus 141 ~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv~~ 220 (450)
T 4fcc_A 141 KSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVY 220 (450)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhheecCCCCCCccceeecchhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeHHH
Confidence 46677888999999999999999999999999754321 134444 332 2232 1233347777778
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~ 390 (585)
++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|++.. .++..+.....+
T Consensus 221 ~~~~~~~~~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~-----Ga------kvVavsD~~G~i~d~~--Gid~e~l~~l~e 287 (450)
T 4fcc_A 221 FTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEF-----GA------RVITASDSSGTVVDES--GFTKEKLARLIE 287 (450)
T ss_dssp HHHHHHHHTTCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEEETTEEEECTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCEEEEeCCChHHHHHHHHHHhc-----CC------eEEEEecCCceEEeCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999998763 63 5566788999988753 354433221110
Q ss_pred --cCCCCCHHH-------------HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 391 --HEPVNNLLD-------------AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 391 --~~~~~~L~e-------------~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
......+.+ -+-.++.|||+=+..+ +.+|++-++.+.+. .-.+|.-=+| |+
T Consensus 288 ~k~~~~g~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcAl~-~~I~~~~a~~L~a~-g~k~IaEgAN~p~ 354 (450)
T 4fcc_A 288 IKSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQ-NELDVDAAHQLIAN-GVKAVAEGANMPT 354 (450)
T ss_dssp HHTSTTCCHHHHHHHHTCEEEETCCGGGSCCSEEEECSCT-TCBCHHHHHHHHHT-TCCEEECCSSSCB
T ss_pred HhcccCCccccccccCCcEEecCcccccCCccEEeecccc-ccccHHHHHHHHhc-CceEEecCCCCCC
Confidence 000111111 1334689999988875 68999999998532 2357777777 65
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.013 Score=59.92 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++..++..+.+|+..++|++|+|. .|..+|.+|... |. .+.+++|+
T Consensus 139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-----gA-------tVtv~hs~------------ 194 (285)
T 3l07_A 139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA-----KA-------TVTTCHRF------------ 194 (285)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC------------
Confidence 344578888999999999999999999999976 899999998752 52 47777653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
..+|.+.++. +|++|...+.++.++.++|+ +.-+|+=++
T Consensus 195 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvg 233 (285)
T 3l07_A 195 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK------EGAVVIDVG 233 (285)
T ss_dssp ------------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC------TTCEEEECC
T ss_pred ------------chhHHHhccc--CCEEEECCCCCCCCCHHHcC------CCcEEEEec
Confidence 1358889987 99999999999999998884 444555443
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.021 Score=58.48 Aligned_cols=93 Identities=16% Similarity=0.259 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++..++..+.+|+..++|++|+|. .|..+|.+|... |. .+.+++++
T Consensus 139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~-----gA-------tVtv~h~~------------- 193 (285)
T 3p2o_A 139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA-----GA-------TVSVCHIK------------- 193 (285)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-------------
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHC-----CC-------eEEEEeCC-------------
Confidence 45678889999999999999999999999876 899999998752 52 47788752
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
..+|.+.++. +|++|...+.++.++.++|+ +.-+|+=++
T Consensus 194 -----------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVg 232 (285)
T 3p2o_A 194 -----------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVG 232 (285)
T ss_dssp -----------CSCHHHHHTT--CSEEEECSSCTTCBCGGGSC------TTEEEEECC
T ss_pred -----------chhHHHHhhc--CCEEEECCCCCCcCCHHHcC------CCeEEEEec
Confidence 1358888987 99999999999999999885 445665553
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.02 Score=57.87 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
-.|++.+++..+..+++.+++|+|||.+|.+++..|.+ .|. ++|+++|+. .++ .......+.
T Consensus 111 ~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~-----~G~------~~v~i~~R~----~~~---a~~la~~~~ 172 (283)
T 3jyo_A 111 VSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD----TSR---AQALADVIN 172 (283)
T ss_dssp HHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSS----HHH---HHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEECC----HHH---HHHHHHHHH
Confidence 45788899888889999999999999777777666654 375 689999874 221 111111221
Q ss_pred cc-------cCCCCCHHHHhcccCCcEEEeccCCC
Q 007904 389 HE-------HEPVNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 389 ~~-------~~~~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
.. .-+..+|.++++. +|++|-++..+
T Consensus 173 ~~~~~~~i~~~~~~~l~~~l~~--~DiVInaTp~G 205 (283)
T 3jyo_A 173 NAVGREAVVGVDARGIEDVIAA--ADGVVNATPMG 205 (283)
T ss_dssp HHHTSCCEEEECSTTHHHHHHH--SSEEEECSSTT
T ss_pred hhcCCceEEEcCHHHHHHHHhc--CCEEEECCCCC
Confidence 11 1123478888876 89999887654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.021 Score=58.20 Aligned_cols=83 Identities=11% Similarity=0.205 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++..++..+ |+..++|++|+| ..|..+|.+|... | ..+.+++++
T Consensus 130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~-----g-------AtVtv~~~~------------ 183 (276)
T 3ngx_A 130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNR-----N-------YTVSVCHSK------------ 183 (276)
T ss_dssp SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHT-----T-------CEEEEECTT------------
T ss_pred CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHC-----C-------CeEEEEeCC------------
Confidence 445678889999999998 999999999998 4899999998752 5 357788652
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.++. +|++|+..+.++.+++++++
T Consensus 184 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk 213 (276)
T 3ngx_A 184 ------------TKDIGSMTRS--SKIVVVAVGRPGFLNREMVT 213 (276)
T ss_dssp ------------CSCHHHHHHH--SSEEEECSSCTTCBCGGGCC
T ss_pred ------------cccHHHhhcc--CCEEEECCCCCccccHhhcc
Confidence 1468899988 99999999999999998874
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.018 Score=59.00 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++-.++..+.+++..++||+|+|. .|.-+|.++... | ..+.+++++
T Consensus 137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~hs~------------ 192 (288)
T 1b0a_A 137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLA-----G-------CTTTVTHRF------------ 192 (288)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTT-----T-------CEEEEECSS------------
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHC-----C-------CeEEEEeCC------------
Confidence 556778889999999999999999999999995 699999888652 4 468888642
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
..+|.+.++. +|++|+..+.++.+|+++|+ +.-+|+=++-|
T Consensus 193 ------------t~~L~~~~~~--ADIVI~Avg~p~lI~~~~vk------~GavVIDVgi~ 233 (288)
T 1b0a_A 193 ------------TKNLRHHVEN--ADLLIVAVGKPGFIPGDWIK------EGAIVIDVGIN 233 (288)
T ss_dssp ------------CSCHHHHHHH--CSEEEECSCCTTCBCTTTSC------TTCEEEECCCE
T ss_pred ------------chhHHHHhcc--CCEEEECCCCcCcCCHHHcC------CCcEEEEccCC
Confidence 1468899987 99999999999999998874 44455555543
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.14 Score=55.69 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=120.9
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH--HHHHHHHcC---C-Ceee----------ccCCCchHHHHHHH
Q 007904 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---T-HLVF----------NDDIQGTASVVLAG 311 (585)
Q Consensus 248 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~lL~ryr~---~-~~~F----------nDDiQGTaaV~lAg 311 (585)
+..+...|-..||..+.+..||..=|-=+|++..-. --+.+.|+. . ..|+ .++-.-||-=+.-+
T Consensus 159 S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~~ 238 (470)
T 2bma_A 159 SDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYF 238 (470)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHHHhcCCcccEEeCCCccCCCCCCccccchHHHHHH
Confidence 455666777889999998889998899999986422 125566642 1 1111 11223466666667
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCchhc------
Q 007904 312 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFK------ 384 (585)
Q Consensus 312 ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k------ 384 (585)
+-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .++...
T Consensus 239 ~~~~l~~~G~~l~g~~vaVqG~GnVG~~~a~~L~~~-----Ga-------kvVavsD~~G~i~dp~--Gid~edl~~l~~ 304 (470)
T 2bma_A 239 VLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHL-----NV-------KVLTLSDSNGYVYEPN--GFTHENLEFLID 304 (470)
T ss_dssp HHHHHHTTTCCGGGCEEEEECSSHHHHHHHHHHHHT-----TC-------EECEEEETTEEEECSS--CCCHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEEeCCceEECCC--CCCHHHHHHHHH
Confidence 788888899999999999999999999999998763 63 455 889888888753 342221
Q ss_pred ---------hhhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 385 ---------KPWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 385 ---------~~fa~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
..|+...+... +-.+.. .++.||||=+.. ++.+|++-++.+-+ |.-.||.--+| |+
T Consensus 305 ~k~~~~g~v~~~~~~~~~a~~v~~~~~~-~~~~DI~iPcA~-~~~I~~~na~~l~~-~~ak~V~EgAN~p~ 372 (470)
T 2bma_A 305 LKEEKKGRIKEYLNHSSTAKYFPNEKPW-GVPCTLAFPCAT-QNDVDLDQAKLLQK-NGCILVGEGANMPS 372 (470)
T ss_dssp HHTTTTCCGGGGGGTCSSCEECSSCCTT-SSCCSEEEECSS-TTCBCSHHHHHHHH-TTCCEEECCSSSCB
T ss_pred HHHhcCCcHHHHHhhcCCcEEecCcCee-ecCccEEEeccc-cCcCCHHHHHHHHh-cCcEEEEeCCCCCC
Confidence 12221000000 001223 568999998885 67999999999854 45679999998 65
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.027 Score=57.73 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++..++..+.+|+..++|++|+|. .|..+|.+|... | ..+.+++++
T Consensus 139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~-----g-------AtVtv~hs~------------ 194 (286)
T 4a5o_A 139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLG-----G-------CTVTVTHRF------------ 194 (286)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHT-----T-------CEEEEECTT------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCC------------
Confidence 334577889999999999999999999999875 899999998752 5 257777542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT 443 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaL-SNPt 443 (585)
..+|.+.++. +|++|+..+.++.++.++|+ +.-+|+=+ +||.
T Consensus 195 ------------T~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvgi~~~ 237 (286)
T 4a5o_A 195 ------------TRDLADHVSR--ADLVVVAAGKPGLVKGEWIK------EGAIVIDVGINRQ 237 (286)
T ss_dssp ------------CSCHHHHHHT--CSEEEECCCCTTCBCGGGSC------TTCEEEECCSCSS
T ss_pred ------------CcCHHHHhcc--CCEEEECCCCCCCCCHHHcC------CCeEEEEeccccc
Confidence 1258888987 99999999999999998884 44455554 3443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.028 Score=58.32 Aligned_cols=114 Identities=19% Similarity=0.257 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHH---------hCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC
Q 007904 306 SVVLAGVVAALKL---------IGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 375 (585)
Q Consensus 306 aV~lAgll~A~r~---------~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~ 375 (585)
-+|-.|.+-.++. .|.++...++||+|+|. .|.-+|.++... | .+++++|+...-...
T Consensus 149 PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~-----g-------AtVtv~nR~~~~l~~ 216 (320)
T 1edz_A 149 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLAND-----G-------ATVYSVDVNNIQKFT 216 (320)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTT-----S-------CEEEEECSSEEEEEE
T ss_pred CCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHC-----C-------CEEEEEeCchHHHHh
Confidence 3444555666666 68899999999999995 598888888642 4 358999987655555
Q ss_pred CccCCchhchhhccccCC---C--CCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 376 RKDSLQHFKKPWAHEHEP---V--NNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 376 r~~~l~~~k~~fa~~~~~---~--~~L~e~v~~vkptvLIG~S~~~g~-Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
|.+.+... ++.... . .+|.+.++. +|++|+..+.++. +|.++|+ +.-+|+=++.|-
T Consensus 217 ra~~la~~----~~~~t~~~~t~~~~L~e~l~~--ADIVIsAtg~p~~vI~~e~vk------~GavVIDVgi~r 278 (320)
T 1edz_A 217 RGESLKLN----KHHVEDLGEYSEDLLKKCSLD--SDVVITGVPSENYKFPTEYIK------EGAVCINFACTK 278 (320)
T ss_dssp SCCCSSCC----CCEEEEEEECCHHHHHHHHHH--CSEEEECCCCTTCCBCTTTSC------TTEEEEECSSSC
T ss_pred HHHHHhhh----cccccccccccHhHHHHHhcc--CCEEEECCCCCcceeCHHHcC------CCeEEEEcCCCc
Confidence 54333310 111100 1 469999998 9999999999887 9998874 334666666553
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.14 Score=55.00 Aligned_cols=177 Identities=14% Similarity=0.165 Sum_probs=112.1
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH--HHHHHHHc---CCC---eee----------ccCCCchHHHHH
Q 007904 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYG---TTH---LVF----------NDDIQGTASVVL 309 (585)
Q Consensus 248 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~lL~ryr---~~~---~~F----------nDDiQGTaaV~l 309 (585)
+..|-..|...|++++.+.-||+.-|-=+|++..-. --+.+.|+ ... .++ .+.-.-||-=+.
T Consensus 117 s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~ 196 (421)
T 2yfq_A 117 SERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVA 196 (421)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHHH
Confidence 445677789999999999999999999999987522 23566764 211 222 122234666666
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-----CcccCCCccCCchhc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-----GLIVSSRKDSLQHFK 384 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-----GLi~~~r~~~l~~~k 384 (585)
-++-.+++..|.+|++.||+|.|.|..|...|++|.+ .|. +=+-+.|++ |-|++.. .++...
T Consensus 197 ~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~~-----~Ga------kvVavsD~~~~~~~G~i~d~~--Gld~~~ 263 (421)
T 2yfq_A 197 VVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIER-----QGG------KVCAIAEWDRNEGNYALYNEN--GIDFKE 263 (421)
T ss_dssp HHHHHHHHHTTCCGGGSCEEEECCSHHHHHHHHHHHH-----TTC------CEEECCBCCSSSCSBCCBCSS--CCCHHH
T ss_pred HHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHH-----CCC------EEEEEEecCCCccceEEECCC--CCCHHH
Confidence 6778888899999999999999999999999998876 363 334489999 9999764 343221
Q ss_pred h-hhccccCCCC--------CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 385 K-PWAHEHEPVN--------NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 385 ~-~fa~~~~~~~--------~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
. .+......+. +-.+ +-.++.||||=++. ++.+|++-.+.+ .-.+|.-=+| |+
T Consensus 264 l~~~~~~~g~i~~~~~a~~i~~~~-~~~~~~DIliP~A~-~n~i~~~~A~~l----~ak~VvEgAN~P~ 326 (421)
T 2yfq_A 264 LLAYKEANKTLIGFPGAERITDEE-FWTKEYDIIVPAAL-ENVITGERAKTI----NAKLVCEAANGPT 326 (421)
T ss_dssp HHHHHHHHCC----------------------CEEECSC-SSCSCHHHHTTC----CCSEEECCSSSCS
T ss_pred HHHHHHhcCCcccCCCceEeCccc-hhcCCccEEEEcCC-cCcCCcccHHHc----CCeEEEeCCcccc
Confidence 1 1111111110 1112 23457788886655 557787777766 4566766666 55
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.031 Score=57.63 Aligned_cols=96 Identities=23% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 379 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~ 379 (585)
..|-.-+|-.|++..++..+.+|+..++|++|+|. .|..+|.+|... | ..+.+++++ .
T Consensus 141 ~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~~~~-------T-- 199 (300)
T 4a26_A 141 EPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKE-----N-------ATVTIVHSG-------T-- 199 (300)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----T-------CEEEEECTT-------S--
T ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHC-----C-------CeEEEEeCC-------C--
Confidence 34555678889999999999999999999999876 899999998762 5 258888762 1
Q ss_pred CchhchhhccccCCCCCHH--HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 380 LQHFKKPWAHEHEPVNNLL--DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 380 l~~~k~~fa~~~~~~~~L~--e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
.+|. +.++. +|++|...+.++.++.++++ +.-+|+=++
T Consensus 200 ---------------~~l~l~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvg 239 (300)
T 4a26_A 200 ---------------STEDMIDYLRT--ADIVIAAMGQPGYVKGEWIK------EGAAVVDVG 239 (300)
T ss_dssp ---------------CHHHHHHHHHT--CSEEEECSCCTTCBCGGGSC------TTCEEEECC
T ss_pred ---------------CCchhhhhhcc--CCEEEECCCCCCCCcHHhcC------CCcEEEEEe
Confidence 1344 88887 99999999999999998874 445665553
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.28 Score=52.96 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=121.8
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCch--HHHHHHHHcC---C--Ceee----------ccCCCchHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---T--HLVF----------NDDIQGTASVVL 309 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~lL~ryr~---~--~~~F----------nDDiQGTaaV~l 309 (585)
.+..|-..|...|++++.+.-||+.-|-=+|++..- ---+.+.|+. . -.++ .+.-.-||-=+.
T Consensus 140 ~s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~ 219 (440)
T 3aog_A 140 LSPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVF 219 (440)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHH
Confidence 345667788999999999999999999999998742 1225666632 1 1222 223334666666
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch-hhc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWA 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~fa 388 (585)
-++-.+++..|.+|++.||+|.|.|..|...|++|.+. |. +=+-+.|++|-|++..+ ++.... .+.
T Consensus 220 ~~~~~~~~~~g~~l~g~~vaVqGfGnVG~~~a~~L~e~-----Ga------kvVavsD~~G~i~dp~G--ld~~~l~~~~ 286 (440)
T 3aog_A 220 ITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDH-----GA------RVVAVQDHTGTVYNEAG--IDPYDLLRHV 286 (440)
T ss_dssp HHHHHHHHHHTCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEECSSCEEECTTC--CCHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCCEEEEeccCHHHHHHHHHHHHC-----CC------EEEEEEcCCcEEECCCC--CCHHHHHHHH
Confidence 77788889999999999999999999999999988763 63 33449999999987652 322211 111
Q ss_pred cccCCC--------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 389 HEHEPV--------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 389 ~~~~~~--------~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
.....+ -+-.+ +-.++.||||=++. ++.+|.+-++.+ .-.+|.--+| |+
T Consensus 287 ~~~g~i~~y~~a~~i~~~e-i~~~~~DIlvPcA~-~n~i~~~na~~l----~ak~VvEgAN~p~ 344 (440)
T 3aog_A 287 QEFGGVRGYPKAEPLPAAD-FWGLPVEFLVPAAL-EKQITEQNAWRI----RARIVAEGANGPT 344 (440)
T ss_dssp HHTSSSTTCTTSEECCHHH-HTTCCCSEEEECSS-SSCBCTTTGGGC----CCSEEECCSSSCB
T ss_pred HhcCCcccCCCceEcCchh-hhcCCCcEEEecCC-cCccchhhHHHc----CCcEEEecCcccc
Confidence 111100 12334 44578999998776 568888887776 5678888888 66
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=52.84 Aligned_cols=71 Identities=15% Similarity=0.315 Sum_probs=43.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
..+|+|+|+|..|..++..+.. .|. + ++++|+. ..+ .....+.|.-+.....++.++++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~-----~g~------~-v~v~~r~----~~~---~~~~a~~~~~~~~~~~~~~~~~~~- 80 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSY-----PQY------K-VTVAGRN----IDH---VRAFAEKYEYEYVLINDIDSLIKN- 80 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCT-----TTC------E-EEEEESC----HHH---HHHHHHHHTCEEEECSCHHHHHHT-
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------E-EEEEcCC----HHH---HHHHHHHhCCceEeecCHHHHhcC-
Confidence 7899999999999888776643 253 4 8888873 111 111112221111134578888876
Q ss_pred CCcEEEeccCCC
Q 007904 405 KPTILIGSSGVG 416 (585)
Q Consensus 405 kptvLIG~S~~~ 416 (585)
.|++|-+++.+
T Consensus 81 -~Divi~at~~~ 91 (144)
T 3oj0_A 81 -NDVIITATSSK 91 (144)
T ss_dssp -CSEEEECSCCS
T ss_pred -CCEEEEeCCCC
Confidence 88888766543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.11 Score=51.87 Aligned_cols=106 Identities=16% Similarity=0.256 Sum_probs=68.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
..||.|+|+|..|.++|..+... |.. ..+++++|++ . +.+...+..| ......++.|+++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-----g~~----~~~V~v~dr~----~---~~~~~l~~~~--gi~~~~~~~~~~~~- 63 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-----GYD----PNRICVTNRS----L---DKLDFFKEKC--GVHTTQDNRQGALN- 63 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-----TCC----GGGEEEECSS----S---HHHHHHHHTT--CCEEESCHHHHHSS-
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-----CCC----CCeEEEEeCC----H---HHHHHHHHHc--CCEEeCChHHHHhc-
Confidence 46899999999999999988763 652 2478888874 1 1122222212 01112578899886
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC--CCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASF--NEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~--~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
+|++| ++..+ -..+++++.+..+ .++.+|...++..+ .+..-+|.
T Consensus 64 -aDvVi-lav~p-~~~~~vl~~l~~~~l~~~~iiiS~~agi~-----~~~l~~~l 110 (280)
T 3tri_A 64 -ADVVV-LAVKP-HQIKMVCEELKDILSETKILVISLAVGVT-----TPLIEKWL 110 (280)
T ss_dssp -CSEEE-ECSCG-GGHHHHHHHHHHHHHTTTCEEEECCTTCC-----HHHHHHHH
T ss_pred -CCeEE-EEeCH-HHHHHHHHHHHhhccCCCeEEEEecCCCC-----HHHHHHHc
Confidence 88877 34444 4568888888765 56668888888774 34444554
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.022 Score=57.54 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
-.|++.+++..+.++++.+++|+|||.+|.+++..|.+ .|. ++++++++. .++.+.+.. .+.
T Consensus 101 ~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~----~~~a~~la~---~~~ 162 (277)
T 3don_A 101 GIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYK-----IVR------PTLTVANRT----MSRFNNWSL---NIN 162 (277)
T ss_dssp HHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHT-----TCC------SCCEEECSC----GGGGTTCCS---CCE
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHHHHHHHH---hcc
Confidence 44677888888999999999999999888888777654 375 678999885 222222221 111
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCC
Q 007904 389 HEHEPVNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 389 ~~~~~~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
. ....++.++++. +|++|-++..+
T Consensus 163 ~--~~~~~~~~~~~~--aDiVInaTp~G 186 (277)
T 3don_A 163 K--INLSHAESHLDE--FDIIINTTPAG 186 (277)
T ss_dssp E--ECHHHHHHTGGG--CSEEEECCC--
T ss_pred c--ccHhhHHHHhcC--CCEEEECccCC
Confidence 0 112345566665 89999776543
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.12 Score=56.35 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=87.5
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccC
Q 007904 300 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 379 (585)
Q Consensus 300 DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~ 379 (585)
.+.|+......|+ .+.+|..+...+++|+|.|..|.++|+.+... |+ +++.+|++.. +.
T Consensus 235 ~~~~~~~~l~~gw---~r~~~~~l~GktVgIIG~G~IG~~vA~~l~~~-----G~-------~Viv~d~~~~----~~-- 293 (479)
T 1v8b_A 235 NVYGCRHSLPDGL---MRATDFLISGKIVVICGYGDVGKGCASSMKGL-----GA-------RVYITEIDPI----CA-- 293 (479)
T ss_dssp HHHHHHHHHHHHH---HHHHCCCCTTSEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSCHH----HH--
T ss_pred chHhHHHHHhhhh---hhccccccCCCEEEEEeeCHHHHHHHHHHHhC-----cC-------EEEEEeCChh----hH--
Confidence 3444444555562 25678899999999999999999999998753 63 6888887521 00
Q ss_pred CchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 380 LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 380 l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
+ ......-...+|.|+++. .|++|.+....++++++.++.|. +.-||.=.|.-. .|+.-++..+
T Consensus 294 ~-----~a~~~g~~~~~l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK---~gailiNvgrg~--~EId~~aL~~ 357 (479)
T 1v8b_A 294 I-----QAVMEGFNVVTLDEIVDK--GDFFITCTGNVDVIKLEHLLKMK---NNAVVGNIGHFD--DEIQVNELFN 357 (479)
T ss_dssp H-----HHHTTTCEECCHHHHTTT--CSEEEECCSSSSSBCHHHHTTCC---TTCEEEECSSTT--TSBCHHHHHT
T ss_pred H-----HHHHcCCEecCHHHHHhc--CCEEEECCChhhhcCHHHHhhcC---CCcEEEEeCCCC--ccccchhhhc
Confidence 0 011111112479999986 99999998778899999999885 667888788755 6777777666
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.06 Score=55.04 Aligned_cols=98 Identities=14% Similarity=0.292 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++-.++..+.+++..++|++|+|. .|.-+|.+|.. .|. -..+++++|+
T Consensus 136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~-----~g~-----~atVtv~h~~------------ 193 (281)
T 2c2x_A 136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTR-----RSE-----NATVTLCHTG------------ 193 (281)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTS-----TTT-----CCEEEEECTT------------
T ss_pred CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhc-----CCC-----CCEEEEEECc------------
Confidence 555677888999999999999999999999996 58888877753 220 1457777542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
..+|.+.++. +|++|+..+.++.+|+++|+ +.-+|+=++-|
T Consensus 194 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~ 234 (281)
T 2c2x_A 194 ------------TRDLPALTRQ--ADIVVAAVGVAHLLTADMVR------PGAAVIDVGVS 234 (281)
T ss_dssp ------------CSCHHHHHTT--CSEEEECSCCTTCBCGGGSC------TTCEEEECCEE
T ss_pred ------------hhHHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEccCC
Confidence 1468899987 99999999999999999985 44577766655
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.16 Score=50.46 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=57.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh-------hccc--------
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-------WAHE-------- 390 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~-------fa~~-------- 390 (585)
.||.|+|+|..|.+||..+..+ |. +++++|++- . .+...+.. +...
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~----~---~~~~~~~~i~~~~~~~~~~g~~~~~~~ 65 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH-----GF-------AVTAYDINT----D---ALDAAKKRFEGLAAVYEKEVAGAADGA 65 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSH----H---HHHHHHHHHHHHHHHHHHHSTTCTTTH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----H---HHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 6899999999999999998763 64 688888741 1 11111111 1000
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 391 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 391 -------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
.....++.|+++. .|++|=+-...-...+++++.+.++...-.|+ .||-++.
T Consensus 66 ~~~~~~~i~~~~~~~~~~~~--aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il-~s~tS~~ 124 (283)
T 4e12_A 66 AQKALGGIRYSDDLAQAVKD--ADLVIEAVPESLDLKRDIYTKLGELAPAKTIF-ATNSSTL 124 (283)
T ss_dssp HHHHHHHCEEESCHHHHTTT--CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEE-EECCSSS
T ss_pred HHHHHcCeEEeCCHHHHhcc--CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEE-EECCCCC
Confidence 0123578888876 89888433211114566777777665544444 3454443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.19 Score=52.92 Aligned_cols=102 Identities=16% Similarity=0.307 Sum_probs=62.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 401 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 401 (585)
.+.+.+++|+|+|..|..++..+... |. ++++++|+. ..+ .....+.|--+.-...++.+.+
T Consensus 164 ~l~g~~VlIiGaG~iG~~~a~~l~~~-----G~------~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~l~~~l 225 (404)
T 1gpj_A 164 SLHDKTVLVVGAGEMGKTVAKSLVDR-----GV------RAVLVANRT----YER---AVELARDLGGEAVRFDELVDHL 225 (404)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHH-----CC------SEEEEECSS----HHH---HHHHHHHHTCEECCGGGHHHHH
T ss_pred cccCCEEEEEChHHHHHHHHHHHHHC-----CC------CEEEEEeCC----HHH---HHHHHHHcCCceecHHhHHHHh
Confidence 57889999999999999998888653 75 679998874 111 1111111211111124677777
Q ss_pred cccCCcEEEeccCCC-CCCCHHHHHH--HH-cCCCCcEEEecCCCC
Q 007904 402 KVIKPTILIGSSGVG-RTFTKEVIEA--MA-SFNEKPLILALSNPT 443 (585)
Q Consensus 402 ~~vkptvLIG~S~~~-g~Ft~evi~~--Ma-~~~erPIIFaLSNPt 443 (585)
.. .|++|-+++.+ ..++++.++. |. +...+-+++-++.|.
T Consensus 226 ~~--aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~ 269 (404)
T 1gpj_A 226 AR--SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR 269 (404)
T ss_dssp HT--CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred cC--CCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCC
Confidence 64 89999877654 3567888887 43 222334555566553
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.039 Score=55.87 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=56.3
Q ss_pred HHHHHHHHHhC-CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 310 AGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 310 Agll~A~r~~g-~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
.|++.+++..+ ..++..+++|+|||.+|..+|..|.+ .|. ++++++|+. ..+ .......+.
T Consensus 125 ~G~~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~-----~G~------~~V~v~nR~----~~k---a~~la~~~~ 186 (297)
T 2egg_A 125 LGYVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLS-----TAA------ERIDMANRT----VEK---AERLVREGD 186 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT-----TTC------SEEEEECSS----HHH---HHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 78888888877 78999999999999888888777654 364 679999874 111 111111111
Q ss_pred cccCCC---CCHHHHhcccCCcEEEeccCCC
Q 007904 389 HEHEPV---NNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 389 ~~~~~~---~~L~e~v~~vkptvLIG~S~~~ 416 (585)
...... .++.++++. +|++|-+++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~--aDivIn~t~~~ 215 (297)
T 2egg_A 187 ERRSAYFSLAEAETRLAE--YDIIINTTSVG 215 (297)
T ss_dssp SSSCCEECHHHHHHTGGG--CSEEEECSCTT
T ss_pred hccCceeeHHHHHhhhcc--CCEEEECCCCC
Confidence 100011 245566655 99999887755
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.34 Score=51.98 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=117.0
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH---HHHHHcC---C--CeeeccCC----------CchHHHHH
Q 007904 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---T--HLVFNDDI----------QGTASVVL 309 (585)
Q Consensus 248 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---lL~ryr~---~--~~~FnDDi----------QGTaaV~l 309 (585)
+.+|-..|...|++++.+.-||+.-|-=+|++.. ... +.+.|+. . ..++.-+- .-||-=+.
T Consensus 116 s~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~-~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~ 194 (421)
T 1v9l_A 116 SQRELEELSRGYARAIAPLIGDVVDIPAPDVGTN-AQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVA 194 (421)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCC-HHHHHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-HHHHHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHH
Confidence 4456678899999999999899999999999873 222 3456631 1 12222221 22555555
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccC---Cchhch
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDS---LQHFKK 385 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~---l~~~k~ 385 (585)
-++-.+++..|.+|++.+|+|.|.|..|...|++|.+ .|. +++ +.|++|-|++..+=+ +..++.
T Consensus 195 ~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~aa~~L~e-----~Ga-------kVVavsD~~G~i~dp~GlD~~~l~~~k~ 262 (421)
T 1v9l_A 195 VATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEK-----MGA-------KVIAVSDINGVAYRKEGLNVELIQKNKG 262 (421)
T ss_dssp HHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHT-----TTC-------EEEEEECSSCEEECTTCCCTHHHHHTTT
T ss_pred HHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEECCCcEEECCCCCCHHHHHHHHH
Confidence 5677788889999999999999999999999988765 363 455 999999998764211 111221
Q ss_pred hhcc-------cc---CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 386 PWAH-------EH---EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 386 ~fa~-------~~---~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
.+-. .. ....+-.| +-.++.|+|+=+.. ++.+|++-++.+ .-.||.--+| |+
T Consensus 263 ~~g~~~v~~y~~~~~~~~~~~~~~-~~~~~~Dil~P~A~-~~~I~~~~a~~l----~ak~V~EgAN~p~ 325 (421)
T 1v9l_A 263 LTGPALVELFTTKDNAEFVKNPDA-IFKLDVDIFVPAAI-ENVIRGDNAGLV----KARLVVEGANGPT 325 (421)
T ss_dssp SCHHHHHHHHHHTSCCCCCSSTTG-GGGCCCSEEEECSC-SSCBCTTTTTTC----CCSEEECCSSSCB
T ss_pred hhCCccccccccccCceEeCCchh-hhcCCccEEEecCc-CCccchhhHHHc----CceEEEecCCCcC
Confidence 1100 00 11101123 34468999997775 668888777766 5678888888 65
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.18 Score=52.89 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=108.1
Q ss_pred hhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH--HHHHHHHcC---CCeeec---cCCCchHHHHHHHHHHHHHHhC
Q 007904 249 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---THLVFN---DDIQGTASVVLAGVVAALKLIG 320 (585)
Q Consensus 249 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~lL~ryr~---~~~~Fn---DDiQGTaaV~lAgll~A~r~~g 320 (585)
..+-++++..|.+++.+..|+ -|-=+|++..-. --+.+.|+- +-..+. |--.-||-=+.-++-.+++..|
T Consensus 92 ~~~~e~~~r~~~~~~~~l~g~--~ipa~D~gt~~~~m~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G 169 (355)
T 1c1d_A 92 PSTWARILRIHAENIDKLSGN--YWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRG 169 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCSCBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHhcCC--cccCCCCCCCHHHHHHHHHhcCeeeccchhhCCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 345567788888888887765 578899975332 225666652 111111 1111255555667778888889
Q ss_pred C-CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC-CCCCHH
Q 007904 321 G-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLL 398 (585)
Q Consensus 321 ~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~-~~~~L~ 398 (585)
. .|++.+|+|.|.|..|..+|+.+.+ .|. ++++.|++ ..+ ..|+.... ..-++.
T Consensus 170 ~~~L~GktV~I~G~GnVG~~~A~~l~~-----~Ga-------kVvvsD~~----~~~--------~~~a~~~ga~~v~~~ 225 (355)
T 1c1d_A 170 LGSLDGLTVLVQGLGAVGGSLASLAAE-----AGA-------QLLVADTD----TER--------VAHAVALGHTAVALE 225 (355)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSC----HHH--------HHHHHHTTCEECCGG
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEeCC----ccH--------HHHHHhcCCEEeChH
Confidence 8 8999999999999999999988764 373 67788874 111 22322110 112444
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSE 447 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E 447 (585)
|... ++.|+|+=++ ..+.++++-++.| +-.||.--+| |+..+|
T Consensus 226 ell~-~~~DIliP~A-~~~~I~~~~~~~l----k~~iVie~AN~p~t~~e 269 (355)
T 1c1d_A 226 DVLS-TPCDVFAPCA-MGGVITTEVARTL----DCSVVAGAANNVIADEA 269 (355)
T ss_dssp GGGG-CCCSEEEECS-CSCCBCHHHHHHC----CCSEECCSCTTCBCSHH
T ss_pred Hhhc-CccceecHhH-HHhhcCHHHHhhC----CCCEEEECCCCCCCCHH
Confidence 5443 5789999654 4679999999999 3568888887 653334
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.06 Score=53.54 Aligned_cols=144 Identities=19% Similarity=0.299 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcC--------CceeeeeecCCCchHHHHH--HHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCccc
Q 007904 256 LDEFMSAVKQNYG--------EKVLIQFEDFANHNAFELL--AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAE 325 (585)
Q Consensus 256 idefv~av~~~fG--------p~~lIq~EDf~~~~af~lL--~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d 325 (585)
+++|++.++..|. ...++.+=|- ++.|..+= +-...+ .=+|-|- .|++.+++.. .+++
T Consensus 42 l~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~-~~~A~~iGAvNTi~~~-~G~NTD~--------~G~~~~l~~~--~~~~ 109 (253)
T 3u62_A 42 FDTEIRRILEEYDGFNATIPHKERVMRYVEP-SEDAQRIKAVNCVFRG-KGYNTDW--------VGVVKSLEGV--EVKE 109 (253)
T ss_dssp HHHHHHHHHHHCSEEEECTTCTTGGGGGSEE-CHHHHHHTCCCEEETT-EEECCHH--------HHHHHHTTTC--CCCS
T ss_pred HHHHHHHHhhCCCceeecCChHHHHHHHhCC-CHHHHHcCcceEeecC-EEEcchH--------HHHHHHHHhc--CCCC
Confidence 5677776664442 1234555555 66665440 000001 3455552 3677777654 5678
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
+++|+|||.+|.+++..|.+ .|. ++|+++|+. .++.+.|.. .|.. ....++.++++.
T Consensus 110 -~vliiGaGg~a~ai~~~L~~-----~G~------~~I~v~nR~----~~ka~~la~---~~~~--~~~~~~~~~~~~-- 166 (253)
T 3u62_A 110 -PVVVVGAGGAARAVIYALLQ-----MGV------KDIWVVNRT----IERAKALDF---PVKI--FSLDQLDEVVKK-- 166 (253)
T ss_dssp -SEEEECCSHHHHHHHHHHHH-----TTC------CCEEEEESC----HHHHHTCCS---SCEE--EEGGGHHHHHHT--
T ss_pred -eEEEECcHHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHHHHHHHH---Hccc--CCHHHHHhhhcC--
Confidence 99999999999888887765 375 679999884 222222221 1110 123457777776
Q ss_pred CcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEecC
Q 007904 406 PTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 406 ptvLIG~S~~~-----g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+|++|-++..+ ..+.++.++ +..+|+-++
T Consensus 167 aDiVInatp~gm~p~~~~i~~~~l~------~~~~V~Div 200 (253)
T 3u62_A 167 AKSLFNTTSVGMKGEELPVSDDSLK------NLSLVYDVI 200 (253)
T ss_dssp CSEEEECSSTTTTSCCCSCCHHHHT------TCSEEEECS
T ss_pred CCEEEECCCCCCCCCCCCCCHHHhC------cCCEEEEee
Confidence 99999765432 124444432 456666654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.15 Score=51.15 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=68.3
Q ss_pred HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCC
Q 007904 316 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 395 (585)
Q Consensus 316 ~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~ 395 (585)
++..+..+.+.+++|+|+|..|..+|+.+... |. +++.+|+.- .+ +...+ .+--..-...
T Consensus 148 ~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~-----G~-------~V~~~d~~~----~~---~~~~~-~~g~~~~~~~ 207 (300)
T 2rir_A 148 IQHTDYTIHGSQVAVLGLGRTGMTIARTFAAL-----GA-------NVKVGARSS----AH---LARIT-EMGLVPFHTD 207 (300)
T ss_dssp HHTCSSCSTTSEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESSH----HH---HHHHH-HTTCEEEEGG
T ss_pred HHhcCCCCCCCEEEEEcccHHHHHHHHHHHHC-----CC-------EEEEEECCH----HH---HHHHH-HCCCeEEchh
Confidence 34567899999999999999999999988642 63 688888741 11 11100 0100000124
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 396 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
+|.|+++. .|++|-+.. .+.++++.++.|. +..+|+=+|.
T Consensus 208 ~l~~~l~~--aDvVi~~~p-~~~i~~~~~~~mk---~g~~lin~a~ 247 (300)
T 2rir_A 208 ELKEHVKD--IDICINTIP-SMILNQTVLSSMT---PKTLILDLAS 247 (300)
T ss_dssp GHHHHSTT--CSEEEECCS-SCCBCHHHHTTSC---TTCEEEECSS
T ss_pred hHHHHhhC--CCEEEECCC-hhhhCHHHHHhCC---CCCEEEEEeC
Confidence 68888875 999997665 4799999888774 5678888886
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.7 Score=48.85 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCeeeccCCC---chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 293 THLVFNDDIQ---GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 293 ~~~~FnDDiQ---GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+.+.|.--- .+|=-+++.+|+..|..|..|.+.+|.|+|.|..|-.+|+.+... |+ +++.+|+.
T Consensus 81 gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~~d~~ 148 (380)
T 2o4c_A 81 GIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGL-----GW-------KVLVCDPP 148 (380)
T ss_dssp TCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECHH
T ss_pred CCEEEeCCCcChHHHHHHHHHHHHHHHhhhhcccCCCEEEEEeCCHHHHHHHHHHHHC-----CC-------EEEEEcCC
Confidence 4555554322 234458999999999999999999999999999999999988653 74 57888763
Q ss_pred CcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc---C-----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 370 GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS---G-----VGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 370 GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S---~-----~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
.- . .. ......+|.|+++. .|+++=.- . ..++|+++.++.|. +..++.=.|.
T Consensus 149 ~~----------~--~~---~g~~~~~l~ell~~--aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~sR 208 (380)
T 2o4c_A 149 RQ----------A--RE---PDGEFVSLERLLAE--ADVISLHTPLNRDGEHPTRHLLDEPRLAALR---PGTWLVNASR 208 (380)
T ss_dssp HH----------H--HS---TTSCCCCHHHHHHH--CSEEEECCCCCSSSSSCCTTSBCHHHHHTSC---TTEEEEECSC
T ss_pred hh----------h--hc---cCcccCCHHHHHHh--CCEEEEeccCccccccchhhhcCHHHHhhCC---CCcEEEECCC
Confidence 10 0 00 01123579999986 89888542 1 34689999999885 5678877774
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.14 Score=52.96 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=62.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc----CCCCCHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLL 398 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~----~~~~~L~ 398 (585)
++..+++|+|||.+|.+++..+.. .| | +++++|+. ..| +...+..++... ....++.
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~-----~G-----a--~V~v~dr~----~~r---~~~~~~~~~~~~~~~~~~~~~~~ 225 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVG-----LG-----A--QVQIFDIN----VER---LSYLETLFGSRVELLYSNSAEIE 225 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHH-----TT-----C--EEEEEESC----HHH---HHHHHHHHGGGSEEEECCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh-----CC-----C--EEEEEeCC----HHH---HHHHHHhhCceeEeeeCCHHHHH
Confidence 667899999999999999888765 26 2 68888874 111 222222222210 0112466
Q ss_pred HHhcccCCcEEEeccCCCCC-----CCHHHHHHHHcCCCCcEEEecCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRT-----FTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~-----Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
+.++ +.|++|.+++.++. ++++.++.|. +.-+|+-++.+
T Consensus 226 ~~~~--~~DvVI~~~~~~~~~~~~li~~~~~~~~~---~g~~ivdv~~~ 269 (361)
T 1pjc_A 226 TAVA--EADLLIGAVLVPGRRAPILVPASLVEQMR---TGSVIVDVAVD 269 (361)
T ss_dssp HHHH--TCSEEEECCCCTTSSCCCCBCHHHHTTSC---TTCEEEETTCT
T ss_pred HHHc--CCCEEEECCCcCCCCCCeecCHHHHhhCC---CCCEEEEEecC
Confidence 7776 48999998876652 5888888885 45577777754
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=93.53 E-value=1.5 Score=47.41 Aligned_cols=178 Identities=17% Similarity=0.189 Sum_probs=117.9
Q ss_pred hhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHHc---CC--Ceeecc----------CCCchHHHHHHH
Q 007904 249 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYG---TT--HLVFND----------DIQGTASVVLAG 311 (585)
Q Consensus 249 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ryr---~~--~~~FnD----------DiQGTaaV~lAg 311 (585)
..+-..|-..||..+.+..||..-|-=+|++..-.. -+.+.|+ +. .-++-. .-.-||-=+.-+
T Consensus 137 ~~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~ 216 (449)
T 1bgv_A 137 DREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYY 216 (449)
T ss_dssp HHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHHH
Confidence 456677778899999888999999999999876221 1344443 21 122211 113366556667
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC-chh-------
Q 007904 312 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-QHF------- 383 (585)
Q Consensus 312 ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l-~~~------- 383 (585)
+-.+++..|.+|++.||+|.|.|..|...|++|.+. |. +=+-+.|++|-|++.. .+ ++.
T Consensus 217 ~~~~~~~~G~~l~g~~v~VqG~GnVG~~~a~~L~~~-----Ga------kvVavsD~~G~i~dp~--Gi~d~edi~~l~~ 283 (449)
T 1bgv_A 217 VEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL-----GA------KAVTLSGPDGYIYDPE--GITTEEKINYMLE 283 (449)
T ss_dssp HHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH-----TC------EEEEEEETTEEEECTT--CSCSHHHHHHHHH
T ss_pred HHHHHHHccCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEeCCceEECCC--cCCCHHHHHHHHH
Confidence 778888899999999999999999999999888764 63 3344789999888753 34 221
Q ss_pred -c-------hhhccc--cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 384 -K-------KPWAHE--HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 384 -k-------~~fa~~--~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
+ ..|... .+.. +-.+.. .++.|+|+=+.. ++.+|++-.+.+-+ |...||.-=+| |+
T Consensus 284 ~k~~~~g~v~~y~~~~~a~~i-~~~e~~-~~~~Dil~P~A~-~~~I~~~na~~l~a-~g~kiV~EgAN~p~ 350 (449)
T 1bgv_A 284 MRASGRNKVQDYADKFGVQFF-PGEKPW-GQKVDIIMPCAT-QNDVDLEQAKKIVA-NNVKYYIEVANMPT 350 (449)
T ss_dssp HHHHCCCCTHHHHHHHTCEEE-ETCCGG-GSCCSEEECCSC-TTCBCHHHHHHHHH-TTCCEEECCSSSCB
T ss_pred HHhccCCChhhcccccCCEEe-Cchhhh-cCCcceeecccc-ccccchhhHHHHHh-cCCeEEEeCCCCcC
Confidence 1 111110 0000 001222 568999997775 67999999999854 34578888888 65
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.15 Score=51.54 Aligned_cols=101 Identities=12% Similarity=0.268 Sum_probs=64.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC--ch-hchhhccccCC---CCCHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL--QH-FKKPWAHEHEP---VNNLLD 399 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l--~~-~k~~fa~~~~~---~~~L~e 399 (585)
.||.|+|||+.|.++|..+... |+ .+++++|.+- ++-+.+ .- +...+...... ..++ +
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~-----g~------~~V~l~D~~~----~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~ 68 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD-----NL------ADVVLFDIAE----GIPQGKALDITHSMVMFGSTSKVIGTDDY-A 68 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSSS----SHHHHHHHHHHHHHHHHTCCCCEEEESCG-G
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------ceEEEEeCCc----hHHHHHHHHHHhhhhhcCCCcEEEECCCH-H
Confidence 5899999999999999998764 65 2599999852 111100 00 00011110111 1456 7
Q ss_pred HhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 400 AVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+++. +|++|=+.+.+.. +.+++++.+.++++.-||+-.|||..
T Consensus 69 a~~~--aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~ 125 (317)
T 2ewd_A 69 DISG--SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125 (317)
T ss_dssp GGTT--CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH
T ss_pred HhCC--CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHH
Confidence 7775 8988865543321 24678888888899999999999974
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.12 Score=52.47 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..|.++++.+++|+|||.+|.+++..|.+ .|. ++|+++++.
T Consensus 107 ~G~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~-----~G~------~~v~v~nRt 155 (282)
T 3fbt_A 107 IGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKD-----NFA------KDIYVVTRN 155 (282)
T ss_dssp HHHHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHH-----TTC------SEEEEEESC
T ss_pred HHHHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 7889999988999999999999999888888877765 375 689999874
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.11 Score=52.33 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=63.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch---hchhhccccCC--CCCHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH---FKKPWAHEHEP--VNNLLDA 400 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~---~k~~fa~~~~~--~~~L~e~ 400 (585)
.||.|+|||+.|..+|..|... |+ ...++++|++- ++.+.+.. +...+...... ..++ ++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-----g~-----~~~V~l~d~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~ 66 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-----GV-----ADDYVFIDANE----AKVKADQIDFQDAMANLEAHGNIVINDW-AA 66 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSH----HHHHHHHHHHHHHGGGSSSCCEEEESCG-GG
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEcCCH----HHHHHHHHHHHhhhhhcCCCeEEEeCCH-HH
Confidence 3899999999999999988764 64 25799999851 11111110 00011100001 1456 66
Q ss_pred hcccCCcEEEeccCCC-------CCC-----------CHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 401 VKVIKPTILIGSSGVG-------RTF-----------TKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLIG~S~~~-------g~F-----------t~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
++. .|++|=+...+ |.. -+++++.|.++++..+|+-+|||..
T Consensus 67 ~~~--aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~ 126 (309)
T 1hyh_A 67 LAD--ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD 126 (309)
T ss_dssp GTT--CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH
T ss_pred hCC--CCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHH
Confidence 765 89888554432 211 1688999988888888888999984
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.14 Score=52.53 Aligned_cols=106 Identities=18% Similarity=0.286 Sum_probs=67.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC---CCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~---~~L~e~v~ 402 (585)
.||.|+|||+.|.++|.+|... |+ -+++++|.+-=..+.-...+.+. ..+......+ .++.++++
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~-----g~------~~V~L~D~~~~~~~~~~~~l~~~-~~~~~~~~~i~~t~d~~ea~~ 77 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR-----EL------ADVVLYDVVKGMPEGKALDLSHV-TSVVDTNVSVRAEYSYEAALT 77 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSSSSHHHHHHHHHHHH-HHHTTCCCCEEEECSHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------CeEEEEECChhHHHHHHHHHHhh-hhccCCCCEEEEeCCHHHHhC
Confidence 5899999999999999998763 64 13999998621000000001111 1111111122 57888888
Q ss_pred ccCCcEEEeccCCC---CC----------------CCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 403 VIKPTILIGSSGVG---RT----------------FTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~----------------Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
+ .|++|=+.+.+ |. .-+++.+.|.++++.-+|+=-|||..-
T Consensus 78 ~--aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~ 137 (331)
T 1pzg_A 78 G--ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDC 137 (331)
T ss_dssp T--CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred C--CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHH
Confidence 7 89988554333 32 147888999999988898888999843
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.29 Score=49.89 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=65.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC---CCCHHHHhc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVK 402 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~ 402 (585)
||+|+|| |..|..++.+|+. .|+ ...++++|.+-. .+...+|.+...+ . +-.. ..++.++++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~-----~~~-----~~ev~L~Di~~~--~~~a~dL~~~~~~-~-~l~~~~~t~d~~~a~~ 67 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKN-----SPL-----VSRLTLYDIAHT--PGVAADLSHIETR-A-TVKGYLGPEQLPDCLK 67 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHT-----CTT-----CSEEEEEESSSH--HHHHHHHTTSSSS-C-EEEEEESGGGHHHHHT
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CcEEEEEeCCcc--HHHHHHHhccCcC-c-eEEEecCCCCHHHHhC
Confidence 8999998 9999998877653 355 357999998641 1100012111100 0 0001 135888898
Q ss_pred ccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ | ...+++++.|.+++...+|+-.|||.
T Consensus 68 ~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv 120 (314)
T 1mld_A 68 G--CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV 120 (314)
T ss_dssp T--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred C--CCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCc
Confidence 7 89988554443 2 24667888888999998988899998
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.3 Score=53.45 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=73.6
Q ss_pred HHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCC
Q 007904 317 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN 396 (585)
Q Consensus 317 r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~ 396 (585)
+.+|..+...+++|+|.|..|.++|+.+... |+ +++.+|++.. +. +.. ....-...+
T Consensus 269 ~~~g~~L~GktVgIIG~G~IG~~vA~~l~~~-----G~-------~V~v~d~~~~----~~--~~a-----~~~G~~~~~ 325 (494)
T 3d64_A 269 RATDVMIAGKIAVVAGYGDVGKGCAQSLRGL-----GA-------TVWVTEIDPI----CA--LQA-----AMEGYRVVT 325 (494)
T ss_dssp HHHCCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECSCHH----HH--HHH-----HTTTCEECC
T ss_pred hccccccCCCEEEEEccCHHHHHHHHHHHHC-----CC-------EEEEEeCChH----hH--HHH-----HHcCCEeCC
Confidence 5688999999999999999999999988642 63 6888887521 00 000 011111247
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 397 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
|.|+++. .|++|.+....++++++.++.|. +.-||.=.|...
T Consensus 326 l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK---~gAilINvgrg~ 367 (494)
T 3d64_A 326 MEYAADK--ADIFVTATGNYHVINHDHMKAMR---HNAIVCNIGHFD 367 (494)
T ss_dssp HHHHTTT--CSEEEECSSSSCSBCHHHHHHCC---TTEEEEECSSSS
T ss_pred HHHHHhc--CCEEEECCCcccccCHHHHhhCC---CCcEEEEcCCCc
Confidence 9999986 99999998777899999999995 667888788754
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.13 Score=51.96 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=61.1
Q ss_pred HHHHHHHHHH-hcCCceeeeeecCCCchHHHHHHHHcC--------CCeeeccC--CCc--hHHHHHHHHHHHHHHhCCC
Q 007904 256 LDEFMSAVKQ-NYGEKVLIQFEDFANHNAFELLAKYGT--------THLVFNDD--IQG--TASVVLAGVVAALKLIGGT 322 (585)
Q Consensus 256 idefv~av~~-~fGp~~lIq~EDf~~~~af~lL~ryr~--------~~~~FnDD--iQG--TaaV~lAgll~A~r~~g~~ 322 (585)
+.++++.++. .|.. ++.--=-...++++||+..+ +..++++| ..| |- -.|++.+++..|.+
T Consensus 50 l~~~~~~~~~~~~~G---~nVTiP~K~~v~~~ld~l~~~A~~iGAVNTv~~~~~g~l~G~NTD---~~G~~~~L~~~~~~ 123 (281)
T 3o8q_A 50 FTEAAKHFFAQGGRG---CNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTD---GEGLVQDLLAQQVL 123 (281)
T ss_dssp HHHHHHHHHHTTCCE---EEECTTSHHHHHHHCSEECHHHHHHTCCSEEEECTTSCEEEECCH---HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCE---EEECCccHHHHHHHHhhcCHHHHhhCeeeEEEEcCCCcEEEEecH---HHHHHHHHHHhCCC
Confidence 5667776653 4533 33332233445555554321 22344444 233 33 46788888888999
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+++.+++|+|||.+|.+++..|.+ .|. ++++++++.
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~ 159 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLD-----QQP------ASITVTNRT 159 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHT-----TCC------SEEEEEESS
T ss_pred ccCCEEEEECchHHHHHHHHHHHh-----cCC------CeEEEEECC
Confidence 999999999999877777766654 375 689999884
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.15 Score=52.59 Aligned_cols=50 Identities=32% Similarity=0.403 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.|++.+++..|..+++.+++|+|||.+|.+|+..|.. .|. ++|+++++.
T Consensus 138 ~~Gf~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~-----~Ga------~~V~i~nR~ 187 (315)
T 3tnl_A 138 GTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAAL-----DGV------KEISIFNRK 187 (315)
T ss_dssp HHHHHHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCChHHHHHHHHHHH-----CCC------CEEEEEECC
Confidence 46788888888999999999999999777777766654 375 689999885
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.23 Score=49.32 Aligned_cols=84 Identities=23% Similarity=0.363 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
.|++.+++..|..++..+++|+|+|.+|..+|..|.+. |. +++++|+. .++ .......|.
T Consensus 114 ~G~~~~l~~~~~~~~~~~v~iiGaG~~g~aia~~L~~~-----g~-------~V~v~~r~----~~~---~~~l~~~~g- 173 (275)
T 2hk9_A 114 IGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKE-----GA-------KVFLWNRT----KEK---AIKLAQKFP- 173 (275)
T ss_dssp HHHHHHHHHHCTTGGGSEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSS----HHH---HHHHTTTSC-
T ss_pred HHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHc-----CC-------EEEEEECC----HHH---HHHHHHHcC-
Confidence 48888888888899999999999999999998888653 52 68888874 111 111111110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC
Q 007904 390 EHEPVNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 390 ~~~~~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
.....++.++++. +|++|-+...+
T Consensus 174 -~~~~~~~~~~~~~--aDiVi~atp~~ 197 (275)
T 2hk9_A 174 -LEVVNSPEEVIDK--VQVIVNTTSVG 197 (275)
T ss_dssp -EEECSCGGGTGGG--CSEEEECSSTT
T ss_pred -CeeehhHHhhhcC--CCEEEEeCCCC
Confidence 0112267787775 99999766544
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.16 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCCcEEEecCCCC
Q 007904 421 KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 421 ~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.++++.|.++|+.-+++=.|||.
T Consensus 140 ~~i~~~i~~~~P~A~~in~tNP~ 162 (477)
T 3u95_A 140 LEIAEKMKKMAPKAYLMQTANPV 162 (477)
T ss_dssp HHHHHHHHHHCTTCEEEECSSCH
T ss_pred HHHHHHHHhhCCCeEEEEecChH
Confidence 68999999999999999999998
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.14 Score=52.63 Aligned_cols=49 Identities=33% Similarity=0.443 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..|..+++.+++|+|||.+|.+|+..|.+ .|. ++|+++++.
T Consensus 133 ~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~-----~G~------~~v~v~nRt 181 (312)
T 3t4e_A 133 TGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAI-----EGI------KEIKLFNRK 181 (312)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS
T ss_pred HHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH-----cCC------CEEEEEECC
Confidence 5678888888899999999999999887777776654 375 689999884
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.91 Score=46.22 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=81.6
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhc
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 352 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~ 352 (585)
..+.+.|----. +|=-+++.+|+..|- .+..+.+.+|.|+|.|..|..+|+.+...
T Consensus 90 ~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~----- 164 (313)
T 2ekl_A 90 RNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAM----- 164 (313)
T ss_dssp TTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHHHHHHHHT-----
T ss_pred CCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHHHHHHHHC-----
Confidence 356666643322 334478888888775 35689999999999999999999988753
Q ss_pred CCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHH
Q 007904 353 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMA 428 (585)
Q Consensus 353 Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma 428 (585)
|+ +++.+|+.. . .. ......-...+|.|+++. .|+++=.-- ..++++++.++.|.
T Consensus 165 G~-------~V~~~d~~~----~------~~--~~~~~g~~~~~l~ell~~--aDvVvl~~P~~~~t~~li~~~~l~~mk 223 (313)
T 2ekl_A 165 GM-------KVLAYDILD----I------RE--KAEKINAKAVSLEELLKN--SDVISLHVTVSKDAKPIIDYPQFELMK 223 (313)
T ss_dssp TC-------EEEEECSSC----C------HH--HHHHTTCEECCHHHHHHH--CSEEEECCCCCTTSCCSBCHHHHHHSC
T ss_pred CC-------EEEEECCCc----c------hh--HHHhcCceecCHHHHHhh--CCEEEEeccCChHHHHhhCHHHHhcCC
Confidence 64 688888741 1 10 000000011378899886 898885432 34678899999885
Q ss_pred cCCCCcEEEecCC
Q 007904 429 SFNEKPLILALSN 441 (585)
Q Consensus 429 ~~~erPIIFaLSN 441 (585)
+..++.-.|.
T Consensus 224 ---~ga~lIn~ar 233 (313)
T 2ekl_A 224 ---DNVIIVNTSR 233 (313)
T ss_dssp ---TTEEEEESSC
T ss_pred ---CCCEEEECCC
Confidence 5678887776
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=92.97 E-value=1.9 Score=46.15 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=118.7
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCch--HHHHHHHHc---CC--Ceeecc----------CCCchHHHHHH
Q 007904 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYG---TT--HLVFND----------DIQGTASVVLA 310 (585)
Q Consensus 248 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~lL~ryr---~~--~~~FnD----------DiQGTaaV~lA 310 (585)
+.+|-..|...|++++.+.-||..-|-=+|++..- ---+.+.|+ .. ..++-- --.-||-=+.-
T Consensus 115 s~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~ 194 (415)
T 2tmg_A 115 SRRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKV 194 (415)
T ss_dssp CHHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHH
Confidence 44566788899999999988999989999998652 112455663 11 122322 12236655666
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc-hhhcc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAH 389 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-~~fa~ 389 (585)
++-.+++..|.+++..||+|.|.|..|...|++|.+ +.|. +=+-+.|++|-+++.. .++... ..+..
T Consensus 195 ~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~e----~~Ga------kvVavsD~~G~i~dp~--Gld~~~l~~~~~ 262 (415)
T 2tmg_A 195 CAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQ----ELGS------KVVAVSDSRGGIYNPE--GFDVEELIRYKK 262 (415)
T ss_dssp HHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHH----TTCC------EEEEEECSSCEEECTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHHH----hcCC------EEEEEEeCCCeEECCC--CCCHHHHHHHHH
Confidence 777888889999999999999999999999988865 0253 3344899999988764 243321 11211
Q ss_pred ccCCC--------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 390 EHEPV--------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 390 ~~~~~--------~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
....+ -+-.| +-.++.|+||=++. ++..|++-.+.+ .-.+|.--+| |+
T Consensus 263 ~~g~l~~y~~a~~~~~~e-il~~~~DIliP~A~-~n~i~~~~a~~l----~ak~V~EgAN~p~ 319 (415)
T 2tmg_A 263 EHGTVVTYPKGERITNEE-LLELDVDILVPAAL-EGAIHAGNAERI----KAKAVVEGANGPT 319 (415)
T ss_dssp HSSCSTTCSSSEEECHHH-HTTCSCSEEEECSS-TTSBCHHHHTTC----CCSEEECCSSSCB
T ss_pred hhCCcccCCCceEcCchh-hhcCCCcEEEecCC-cCccCcccHHHc----CCeEEEeCCCccc
Confidence 11111 12333 45578999997776 568888887776 5668888887 65
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.14 Score=51.57 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=61.2
Q ss_pred HHHHHHHHHH-hcCCceeeeeecCCCchHHHHHHHHcC------CC-eeeccC--CCchHHHHHHHHHHH-HHHhCCCcc
Q 007904 256 LDEFMSAVKQ-NYGEKVLIQFEDFANHNAFELLAKYGT------TH-LVFNDD--IQGTASVVLAGVVAA-LKLIGGTLA 324 (585)
Q Consensus 256 idefv~av~~-~fGp~~lIq~EDf~~~~af~lL~ryr~------~~-~~FnDD--iQGTaaV~lAgll~A-~r~~g~~l~ 324 (585)
+.++++.++. .|+. ++.----...++++||+..+ -+ ++.++| ..|.-.= -.|++.+ ++..|.+++
T Consensus 44 l~~~~~~~~~~~~~G---~nVTiP~K~~v~~~~d~l~~~A~~iGAvNTv~~~~g~l~G~NTD-~~G~~~~lL~~~~~~l~ 119 (272)
T 3pwz_A 44 FEAQVLQFRSEGGKG---MNITAPFKLRAFELADRRSERAQLARAANALKFEDGRIVAENFD-GIGLLRDIEENLGEPLR 119 (272)
T ss_dssp HHHHHHHHHHTTCCE---EEECTTCHHHHHHHCSEECHHHHHHTCCSEEEEETTEEEEECCH-HHHHHHHHHTTSCCCCT
T ss_pred HHHHHHHHhhCCCCE---EEECchhHHHHHHHHhhCCHHHHHhCccceEEccCCeEEEecCC-HHHHHHHHHHHcCCCcc
Confidence 5677776653 4533 44433333455666554421 00 123333 3442221 3578888 888888999
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+.+++|+|||.+|-+++..|.+ .|. ++|+++++.
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~-----~G~------~~v~i~~R~ 153 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQ-----AGP------SELVIANRD 153 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHH-----TCC------SEEEEECSC
T ss_pred CCEEEEECccHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 9999999999777777766654 375 689998874
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.16 Score=51.65 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=63.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC-CCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~-~~L~e~v~~v 404 (585)
.||.|+|||..|.++|..+... |+ ...++++|.+--..++...++.+ ..++....... .+..+++++
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~-----~~-----~~ev~l~Di~~~~~~~~~~dl~~-~~~~~~~~~~i~~~~~~al~~- 74 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ-----GI-----ADEIVLIDANESKAIGDAMDFNH-GKVFAPKPVDIWHGDYDDCRD- 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHH-HTTSSSSCCEEEECCGGGTTT-
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCcchHHHHHhhHHH-HhhhcCCCeEEEcCcHHHhCC-
Confidence 5999999999999999776542 54 25799999852101000000111 01111100000 133567776
Q ss_pred CCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g--------------~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+. ...+++++.|.++++.-++|-.|||.
T Consensus 75 -aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv 126 (316)
T 1ldn_A 75 -ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV 126 (316)
T ss_dssp -CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred -CCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCch
Confidence 899885544442 13467888888889888888899998
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.59 Score=51.27 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=117.9
Q ss_pred CChhhhHHHHHHHHHHHHH--hcCCceeeeeecCCCchH--HHHHHHHcC---CC------eeeccC---------CCch
Q 007904 247 ATGQEYAELLDEFMSAVKQ--NYGEKVLIQFEDFANHNA--FELLAKYGT---TH------LVFNDD---------IQGT 304 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~--~fGp~~lIq~EDf~~~~a--f~lL~ryr~---~~------~~FnDD---------iQGT 304 (585)
.+..|-..|.-.||..+.+ -.||..-|-=+|++..-. --+.+.|+. .. |+-..- -.-|
T Consensus 136 ~s~~El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eAT 215 (501)
T 3mw9_A 136 YTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISAT 215 (501)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCch
Confidence 4567788899999999986 778999999999986532 226777752 11 111111 1224
Q ss_pred HHHHHHHHHH------HHHHhCC--CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCC
Q 007904 305 ASVVLAGVVA------ALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 376 (585)
Q Consensus 305 aaV~lAgll~------A~r~~g~--~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r 376 (585)
|-=+.-++-+ +++..|. .|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|++..
T Consensus 216 g~GV~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e~-----Ga------kVVavsDs~G~iyd~~ 284 (501)
T 3mw9_A 216 GRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRF-----GA------KCITVGESDGSIWNPD 284 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEECSSCEEECTT
T ss_pred HHHHHHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC
Confidence 4434444433 3456675 48999999999999999999998763 63 4566899999999764
Q ss_pred ccCCchhch-hhccccC------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 377 KDSLQHFKK-PWAHEHE------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 377 ~~~l~~~k~-~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
.++..+. .+..... ....+.+.+-.++.||||=+..+ +.+|++-++.+ .-.||.--+| |+
T Consensus 285 --Gid~~~l~~~k~~~g~i~~~~~a~~~~~~il~~~~DIliPcA~~-n~I~~~na~~l----~akiV~EgAN~p~ 352 (501)
T 3mw9_A 285 --GIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASE-KQLTKSNAPRV----KAKIIAEGANGPT 352 (501)
T ss_dssp --CCCHHHHHHHHHHHSSSTTCTTSEEECSCGGGSCCSEEEECSSS-CCBCTTTGGGC----CCSEEECCSSSCB
T ss_pred --CCCHHHHHHHHHhcCCeecccCceeeccccccccceEEeecccc-CccCHhHHHHc----CceEEEeCCCCcC
Confidence 3433221 1111111 00011113456789999988885 79999988876 5789999998 54
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.94 Score=47.96 Aligned_cols=119 Identities=10% Similarity=0.092 Sum_probs=85.7
Q ss_pred CCeeeccCC---CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 293 THLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 293 ~~~~FnDDi---QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|.+.|.-- +.+|=-+++.+|+..|..|..|.+.++.|+|.|..|-.+|+.+... |+ +++.+|+.
T Consensus 84 gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~-----G~-------~V~~~d~~ 151 (381)
T 3oet_A 84 GIGFSAAPGCNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEAL-----GI-------RTLLCDPP 151 (381)
T ss_dssp TCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECHH
T ss_pred CEEEEECCCcCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 455555432 2344557999999999999999999999999999999999999753 75 57888762
Q ss_pred CcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC--------CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 370 GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG--------VGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 370 GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~--------~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
. . . .. ......+|.|+++. .|+++=.-- .-++|+++.++.|. +..|+.=.|.
T Consensus 152 ~----~--~-~~--------~~~~~~sl~ell~~--aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR 211 (381)
T 3oet_A 152 R----A--A-RG--------DEGDFRTLDELVQE--ADVLTFHTPLYKDGPYKTLHLADETLIRRLK---PGAILINACR 211 (381)
T ss_dssp H----H--H-TT--------CCSCBCCHHHHHHH--CSEEEECCCCCCSSTTCCTTSBCHHHHHHSC---TTEEEEECSC
T ss_pred h----H--H-hc--------cCcccCCHHHHHhh--CCEEEEcCcCCccccccchhhcCHHHHhcCC---CCcEEEECCC
Confidence 1 0 0 00 11123589999987 898874421 34689999999995 6778887776
Q ss_pred CC
Q 007904 442 PT 443 (585)
Q Consensus 442 Pt 443 (585)
-.
T Consensus 212 G~ 213 (381)
T 3oet_A 212 GP 213 (381)
T ss_dssp GG
T ss_pred Cc
Confidence 33
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.99 Score=49.28 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=76.0
Q ss_pred HHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCC
Q 007904 317 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVN 395 (585)
Q Consensus 317 r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~ 395 (585)
|.++..+.+.+|+|+|+|..|.++|..+.. .|. +++.+|++- .+...|.. .-...
T Consensus 266 r~~~~~l~GktV~IiG~G~IG~~~A~~lka-----~Ga-------~Viv~d~~~------------~~~~~A~~~Ga~~~ 321 (494)
T 3ce6_A 266 RGTDALIGGKKVLICGYGDVGKGCAEAMKG-----QGA-------RVSVTEIDP------------INALQAMMEGFDVV 321 (494)
T ss_dssp HHHCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCH------------HHHHHHHHTTCEEC
T ss_pred hccCCCCCcCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEEeCCH------------HHHHHHHHcCCEEe
Confidence 445668899999999999999999988864 262 688888741 11112221 11124
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 396 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
++.|+++. .|++|-+++..++++++.++.|. +.-+|.-.+... .|+..+..+.
T Consensus 322 ~l~e~l~~--aDvVi~atgt~~~i~~~~l~~mk---~ggilvnvG~~~--~eId~~aL~~ 374 (494)
T 3ce6_A 322 TVEEAIGD--ADIVVTATGNKDIIMLEHIKAMK---DHAILGNIGHFD--NEIDMAGLER 374 (494)
T ss_dssp CHHHHGGG--CSEEEECSSSSCSBCHHHHHHSC---TTCEEEECSSSG--GGBCHHHHHH
T ss_pred cHHHHHhC--CCEEEECCCCHHHHHHHHHHhcC---CCcEEEEeCCCC--CccCHHHHHH
Confidence 68888875 99999998888899999999985 566887777765 3666555443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.32 Score=47.17 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=61.9
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCc-hhchhhcccc--CC
Q 007904 319 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQ-HFKKPWAHEH--EP 393 (585)
Q Consensus 319 ~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~-~~k~~fa~~~--~~ 393 (585)
...++...||.|+|+|..|.++|..|.+. | .+++++|++-=- .+.....+. .....++... ..
T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADL-----G-------HEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80 (245)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE
T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee
Confidence 45578889999999999999999998763 6 368888875210 000000000 0012232221 12
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEecCCCC
Q 007904 394 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSNPT 443 (585)
Q Consensus 394 ~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~M-a~~~erPIIFaLSNPt 443 (585)
..++.|+++. +|++| ++.++. ...++++.+ +..-+..||.-+|||.
T Consensus 81 ~~~~~e~~~~--aDvVi-lavp~~-~~~~~~~~i~~~~l~g~ivi~~s~~~ 127 (245)
T 3dtt_A 81 LAAFADVAAG--AELVV-NATEGA-SSIAALTAAGAENLAGKILVDIANPL 127 (245)
T ss_dssp EEEHHHHHHH--CSEEE-ECSCGG-GHHHHHHHHCHHHHTTSEEEECCCCE
T ss_pred ccCHHHHHhc--CCEEE-EccCcH-HHHHHHHHhhhhhcCCCEEEECCCCC
Confidence 3578899987 88887 343332 344666666 4333677999999974
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=0.35 Score=50.80 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCC-eeeccC------C---CchHHHHHHHHHHHHHHh-CC
Q 007904 253 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH-LVFNDD------I---QGTASVVLAGVVAALKLI-GG 321 (585)
Q Consensus 253 ~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~-~~FnDD------i---QGTaaV~lAgll~A~r~~-g~ 321 (585)
++++..|.+++.+..|+ .|-=+|++..-. .+...-+++ ++---- + .-||-=+.-++..+++.. |.
T Consensus 93 ~~~~r~~~~~~~~l~g~--~i~A~D~Gt~~~--~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~ 168 (364)
T 1leh_A 93 EDMFRALGRFIQGLNGR--YITAEDVGTTVD--DMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGS 168 (364)
T ss_dssp HHHHHHHHHHHHTTTTS--EEBCBCTTCCHH--HHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCc--eEEcccCCCCHH--HHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhhccc
Confidence 45677788888887775 567788875432 333333333 211111 1 134444445556666664 76
Q ss_pred -CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 007904 322 -TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 400 (585)
Q Consensus 322 -~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 400 (585)
+|++.+|+|.|+|..|..+|+.+.+. |. ++++.|++ . +.+..+...|- ...-++.+.
T Consensus 169 ~~L~GktV~V~G~G~VG~~~A~~L~~~-----Ga-------kVvv~D~~------~-~~l~~~a~~~g---a~~v~~~~l 226 (364)
T 1leh_A 169 DSLEGLAVSVQGLGNVAKALCKKLNTE-----GA-------KLVVTDVN------K-AAVSAAVAEEG---ADAVAPNAI 226 (364)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC------H-HHHHHHHHHHC---CEECCGGGT
T ss_pred cCCCcCEEEEECchHHHHHHHHHHHHC-----CC-------EEEEEcCC------H-HHHHHHHHHcC---CEEEChHHH
Confidence 89999999999999999999998753 73 47788853 1 11322222221 111233343
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 401 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
.. .+.|++|=++ ..+.++++.++.| .-.+|.--+| |+
T Consensus 227 l~-~~~DIvip~a-~~~~I~~~~~~~l----g~~iV~e~An~p~ 264 (364)
T 1leh_A 227 YG-VTCDIFAPCA-LGAVLNDFTIPQL----KAKVIAGSADNQL 264 (364)
T ss_dssp TT-CCCSEEEECS-CSCCBSTTHHHHC----CCSEECCSCSCCB
T ss_pred hc-cCCcEeeccc-hHHHhCHHHHHhC----CCcEEEeCCCCCc
Confidence 32 5789999654 4668999888888 4467776666 54
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.059 Score=54.58 Aligned_cols=123 Identities=18% Similarity=0.293 Sum_probs=68.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC-CCCCHHHHhcccC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~-~~~~L~e~v~~vk 405 (585)
||.|+|||+.|.++|..+.. .|+ ...++++|.+---..+...++.+. .+|..+.. ...+ .++++.
T Consensus 2 kI~VIGaG~vG~~la~~la~-----~g~-----~~eV~L~D~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~-~~a~~~-- 67 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVL-----RGS-----CSELVLVDRDEDRAQAEAEDIAHA-APVSHGTRVWHGG-HSELAD-- 67 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSHHHHHHHHHHHTTS-CCTTSCCEEEEEC-GGGGTT--
T ss_pred EEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCHHHHHHHHHhhhhh-hhhcCCeEEEECC-HHHhCC--
Confidence 89999999999999987754 264 247999998521000000001110 01111100 0023 356765
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecC
Q 007904 406 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 406 ptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsG 466 (585)
.|++|=+.+.+.. .-+++++.|+++++.-+|+-.|||... ....+.+.+.-.-+|.+|
T Consensus 68 aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~---~~~~~~~~~~~~rviG~g 139 (304)
T 2v6b_A 68 AQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDL---LTDLATQLAPGQPVIGSG 139 (304)
T ss_dssp CSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHH---HHHHHHHHSCSSCEEECT
T ss_pred CCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHH---HHHHHHHhCChhcEEeCC
Confidence 8988865544321 127888999998888888889999842 233344443333455554
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.5 Score=48.92 Aligned_cols=97 Identities=23% Similarity=0.341 Sum_probs=60.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc----ccCCCCCH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNL 397 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~----~~~~~~~L 397 (585)
.+...+++|+|+|..|..+|+.+.. .|. +++++|++- .+ +...+..+.. +.....++
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~-----~Ga-------~V~~~d~~~----~~---~~~~~~~~g~~~~~~~~~~~~l 223 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALG-----MGA-------QVTILDVNH----KR---LQYLDDVFGGRVITLTATEANI 223 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESCH----HH---HHHHHHHTTTSEEEEECCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEECCH----HH---HHHHHHhcCceEEEecCCHHHH
Confidence 3778999999999999999888764 362 688888741 11 1111111111 00112357
Q ss_pred HHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 398 LDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g-----~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
.++++. .|++|.+.+.++ .++++.++.|. +.-+|.-+|.+
T Consensus 224 ~~~~~~--~DvVi~~~g~~~~~~~~li~~~~l~~mk---~gg~iV~v~~~ 268 (369)
T 2eez_A 224 KKSVQH--ADLLIGAVLVPGAKAPKLVTRDMLSLMK---EGAVIVDVAVD 268 (369)
T ss_dssp HHHHHH--CSEEEECCC-------CCSCHHHHTTSC---TTCEEEECC--
T ss_pred HHHHhC--CCEEEECCCCCccccchhHHHHHHHhhc---CCCEEEEEecC
Confidence 778875 899999876553 46899999885 34566666643
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.39 Score=48.79 Aligned_cols=99 Identities=16% Similarity=0.346 Sum_probs=62.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch------hhcccc-CCCCCHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK------PWAHEH-EPVNNLLD 399 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~------~fa~~~-~~~~~L~e 399 (585)
||.|+|||+.|.++|..|... |. ...++++|++- ++ +..... ++.... -...+ .+
T Consensus 2 kI~VIGaG~~G~~la~~l~~~-----g~-----~~~V~l~D~~~----~~---~~~~~~~l~~~~~~~~~~~i~~~d-~~ 63 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMK-----GF-----AREMVLIDVDK----KR---AEGDALDLIHGTPFTRRANIYAGD-YA 63 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSH----HH---HHHHHHHHHHHGGGSCCCEEEECC-GG
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEeCCh----HH---HHHHHHHHHhhhhhcCCcEEEeCC-HH
Confidence 799999999999999888653 64 24799999851 11 111111 111000 00124 35
Q ss_pred HhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 400 AVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
+++. +|++|=+...+.. .-+++++.|.++++.-+|+-.|||...
T Consensus 64 ~~~~--aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 64 DLKG--SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDV 121 (319)
T ss_dssp GGTT--CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred HhCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHH
Confidence 5654 8888855444331 127889999988888788889999853
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.14 Score=52.59 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=72.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC---CCCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~ 402 (585)
.||.|+|||+.|.++|.++.. .|+ -+++++|.+-=..++-...+.+...++.. ... ..++ ++++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~-----~g~------~~V~L~Di~~~~l~~~~~~l~~~~~~~~~-~~~i~~t~d~-~al~ 81 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQ-----KDL------GDVYMFDIIEGVPQGKALDLNHCMALIGS-PAKIFGENNY-EYLQ 81 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC------CEEEEECSSTTHHHHHHHHHHHHHHHHTC-CCCEEEESCG-GGGT
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEECCHHHHHHHHHHHHhHhhccCC-CCEEEECCCH-HHHC
Confidence 589999999999999988765 265 13999998521010000001111111110 111 1456 7787
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecC
Q 007904 403 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 466 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsG 466 (585)
+ .|++|=+.+.+ |. .-+++.+.+.++++.-+|+-.|||.+.. .+-+.+.+ .-.-+|++|
T Consensus 82 ~--aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~---t~~~~~~~~~~~~rviG~~ 156 (328)
T 2hjr_A 82 N--SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAM---VYYFKEKSGIPANKVCGMS 156 (328)
T ss_dssp T--CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHH---HHHHHHHHCCCGGGEEESC
T ss_pred C--CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHH---HHHHHHhcCCChhhEEEeC
Confidence 6 89888554322 21 2467888888899888877679998432 33333322 223455665
Q ss_pred CCCC
Q 007904 467 SPFD 470 (585)
Q Consensus 467 SPf~ 470 (585)
++.+
T Consensus 157 t~Ld 160 (328)
T 2hjr_A 157 GVLD 160 (328)
T ss_dssp HHHH
T ss_pred cHHH
Confidence 4444
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=91.71 E-value=0.18 Score=49.82 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=32.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 25 ~l~~~~VlvvG~GglG~~va~~La~~-----Gv------g~i~lvD~d 61 (251)
T 1zud_1 25 KLLDSQVLIIGLGGLGTPAALYLAGA-----GV------GTLVLADDD 61 (251)
T ss_dssp HHHTCEEEEECCSTTHHHHHHHHHHT-----TC------SEEEEECCC
T ss_pred HHhcCcEEEEccCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 56789999999999999999988764 87 789999987
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.37 Score=49.12 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=64.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v 404 (585)
.||.|+|||..|.|+|..++.. |+ -..++|+|.+-= ..+...++.. +..+ -....++ ++++.
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~-----g~-----~~ev~L~Di~~~-~~g~a~dl~~----~~~~~i~~t~d~-~~l~~- 77 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK-----GI-----ADRLVLLDLSEG-TKGATMDLEI----FNLPNVEISKDL-SASAH- 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECCC------CHHHHHH----HTCTTEEEESCG-GGGTT-
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEcCCcc-hHHHHHHHhh----hcCCCeEEeCCH-HHHCC-
Confidence 6899999999999999998643 54 268999998631 1111001211 2111 0111466 67776
Q ss_pred CCcEEEeccCCC--CC-----------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 405 KPTILIGSSGVG--RT-----------FTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 405 kptvLIG~S~~~--g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
.|++|=..+.+ |- .-+++++.|.++++.-+|+-.|||..
T Consensus 78 -aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~ 129 (303)
T 2i6t_A 78 -SKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE 129 (303)
T ss_dssp -CSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHH
T ss_pred -CCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHH
Confidence 89988554432 10 13678889999999999988999983
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.29 Score=50.84 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
++.+++.... +....++.|+|+|..|-.++..+... .++ ++++++|+. ..+ .......|..
T Consensus 116 ~s~laa~~la--~~~~~~v~iIGaG~~a~~~a~al~~~----~~~------~~V~V~~r~----~~~---a~~la~~~~~ 176 (350)
T 1x7d_A 116 TSLMAAQALA--RPNARKMALIGNGAQSEFQALAFHKH----LGI------EEIVAYDTD----PLA---TAKLIANLKE 176 (350)
T ss_dssp HHHHHHHHHS--CTTCCEEEEECCSTTHHHHHHHHHHH----SCC------CEEEEECSS----HHH---HHHHHHHHTT
T ss_pred HHHHHHHHhc--cccCCeEEEECCcHHHHHHHHHHHHh----CCC------cEEEEEcCC----HHH---HHHHHHHHHh
Confidence 3455555543 34668999999999999888776543 243 689999873 111 2222222211
Q ss_pred --c--cCCCCCHHHHhcccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEecCC--CCCcCCCCHH
Q 007904 390 --E--HEPVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILALSN--PTSQSECTAE 451 (585)
Q Consensus 390 --~--~~~~~~L~e~v~~vkptvLIG~S~~~---g~Ft~evi~~Ma~~~erPIIFaLSN--Pt~~~E~tpe 451 (585)
. .....++.|+++. .|++|=++..+ ..|..++++ +.-.|+.++. |. +-|+.++
T Consensus 177 ~~g~~~~~~~~~~eav~~--aDiVi~aTps~~~~pvl~~~~l~------~G~~V~~vgs~~p~-~~El~~~ 238 (350)
T 1x7d_A 177 YSGLTIRRASSVAEAVKG--VDIITTVTADKAYATIITPDMLE------PGMHLNAVGGDCPG-KTELHAD 238 (350)
T ss_dssp CTTCEEEECSSHHHHHTT--CSEEEECCCCSSEEEEECGGGCC------TTCEEEECSCCBTT-BEEECHH
T ss_pred ccCceEEEeCCHHHHHhc--CCEEEEeccCCCCCceecHHHcC------CCCEEEECCCCCCC-ceeeCHH
Confidence 0 1124689999986 89999766543 134443332 3447777775 55 5777664
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=2.3 Score=43.60 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=77.0
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHHh-------------------------CCCcccceEEEeCcchHHHHHHHH
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKLI-------------------------GGTLAEHRFLFLGAGEAGTGIAEL 343 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~~-------------------------g~~l~d~riv~~GAGsAg~GIA~l 343 (585)
..+++.|----. +|=-+++.+|+..|-. |..|.+.+|.|+|.|..|..+|..
T Consensus 89 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~ 168 (334)
T 2dbq_A 89 RGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168 (334)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHH
Confidence 345555543222 3334678888876621 456889999999999999999998
Q ss_pred HHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc-CC---CCCC
Q 007904 344 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS-GV---GRTF 419 (585)
Q Consensus 344 l~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S-~~---~g~F 419 (585)
+... |. +++.+|+.. .. .....+ .-...+|.|+++. .|+++=+- .. .+++
T Consensus 169 l~~~-----G~-------~V~~~d~~~----~~-----~~~~~~---g~~~~~l~~~l~~--aDvVil~vp~~~~t~~~i 222 (334)
T 2dbq_A 169 AKGF-----NM-------RILYYSRTR----KE-----EVEREL---NAEFKPLEDLLRE--SDFVVLAVPLTRETYHLI 222 (334)
T ss_dssp HHHT-----TC-------EEEEECSSC----CH-----HHHHHH---CCEECCHHHHHHH--CSEEEECCCCCTTTTTCB
T ss_pred HHhC-----CC-------EEEEECCCc----ch-----hhHhhc---CcccCCHHHHHhh--CCEEEECCCCChHHHHhh
Confidence 8652 63 688888742 10 000011 0012478898886 89887432 21 2577
Q ss_pred CHHHHHHHHcCCCCcEEEecCC
Q 007904 420 TKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 420 t~evi~~Ma~~~erPIIFaLSN 441 (585)
++++++.|. +..+|.-.|.
T Consensus 223 ~~~~~~~mk---~~ailIn~sr 241 (334)
T 2dbq_A 223 NEERLKLMK---KTAILINIAR 241 (334)
T ss_dssp CHHHHHHSC---TTCEEEECSC
T ss_pred CHHHHhcCC---CCcEEEECCC
Confidence 888888885 5667776663
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.22 Score=49.41 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.|++.+++..|..++..+++|+|||.+|.++|..|.+. | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~-----G-------~~v~v~~R~ 151 (272)
T 1p77_A 103 GIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQA-----Q-------QNIVLANRT 151 (272)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHT-----T-------CEEEEEESS
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECC
Confidence 467888888888889999999999998888888777652 5 468888874
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.25 Score=53.33 Aligned_cols=105 Identities=15% Similarity=0.266 Sum_probs=66.6
Q ss_pred ccceEEEeCcchH--HHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCHH
Q 007904 324 AEHRFLFLGAGEA--GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLL 398 (585)
Q Consensus 324 ~d~riv~~GAGsA--g~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~---~~~~~~L~ 398 (585)
+..||.|+|||+. |.|++..|+.. ..+ . ..++|+|.+- ++-+.+......+.+. -....++.
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~----~~~----~-geV~L~Di~~----e~le~~~~~~~~l~~~~~~I~~TtD~~ 70 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSID----ERM----S-GTVALYDLDF----EAAQKNEVIGNHSGNGRWRYEAVSTLK 70 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHC----SSC----C-EEEEEECSSH----HHHHHHHHHHTTSTTSCEEEEEESSHH
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhc----ccc----C-CeEEEEeCCH----HHHHHHHHHHHHHhccCCeEEEECCHH
Confidence 4579999999995 78999888752 222 2 3899999751 1100000000001110 01125799
Q ss_pred HHhcccCCcEEEeccCCC---------------CC---------------------CCHHHHHHHHcCCCCcEEEecCCC
Q 007904 399 DAVKVIKPTILIGSSGVG---------------RT---------------------FTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~---------------g~---------------------Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
||++. +|.+|=.-.+| |. .-.++++.|.++|+.-+++-.|||
T Consensus 71 eAl~d--ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNP 148 (450)
T 3fef_A 71 KALSA--ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNP 148 (450)
T ss_dssp HHHTT--CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred HHhcC--CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 99987 89888333222 22 135788889999999999999999
Q ss_pred C
Q 007904 443 T 443 (585)
Q Consensus 443 t 443 (585)
.
T Consensus 149 v 149 (450)
T 3fef_A 149 M 149 (450)
T ss_dssp H
T ss_pred h
Confidence 9
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.31 Score=47.71 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
.|++.+++..|.++++ +++|+|+|.+|..+|..|.+ .|. +++++|++ ..+ .......|..
T Consensus 102 ~g~~~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~-----~g~-------~v~v~~r~----~~~---~~~l~~~~~~ 161 (263)
T 2d5c_A 102 PGFLEALKAGGIPLKG-PALVLGAGGAGRAVAFALRE-----AGL-------EVWVWNRT----PQR---ALALAEEFGL 161 (263)
T ss_dssp HHHHHHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS----HHH---HHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECC----HHH---HHHHHHHhcc
Confidence 5888889888889999 99999999999999887764 252 58888874 111 1111111211
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC
Q 007904 390 EHEPVNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 390 ~~~~~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
. ..++.++ + ++|++|-+...+
T Consensus 162 ~---~~~~~~~-~--~~Divi~~tp~~ 182 (263)
T 2d5c_A 162 R---AVPLEKA-R--EARLLVNATRVG 182 (263)
T ss_dssp E---ECCGGGG-G--GCSEEEECSSTT
T ss_pred c---hhhHhhc-c--CCCEEEEccCCC
Confidence 1 3467776 5 499999766644
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=91.45 E-value=0.15 Score=52.18 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=66.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC--Ccc--cCCCccCCchhchhhccccCCCCCHHHH
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDA 400 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~--GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 400 (585)
.||+|.|| |..|..++..|+. .|+-...-...++++|.. .-- ..+...+|.+.-.+|..+-....++.++
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~-----~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a 80 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIAN-----GDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA 80 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHT-----TTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence 58999998 9999998877764 254111112479999975 100 0000000111001222221122578899
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
+++ .|++|=+.+.+ | ..++++++.+.+++ ...+|+-.|||.
T Consensus 81 l~~--aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv 136 (329)
T 1b8p_A 81 FKD--ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA 136 (329)
T ss_dssp TTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred hCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence 987 89888555544 2 13578899999996 787787889998
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.2 Score=51.24 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=64.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhccccCC---CCCHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEP---VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~~~~---~~~L~ 398 (585)
.||.|+|||+.|.++|.++... |+ + +++++|.+ .++-+ .+.+. ..+...... ..++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~-----g~----~--~v~L~Di~----~~~l~~~~~~l~~~-~~~~~~~~~i~~t~d~- 67 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK-----NL----G--DVVLFDIV----KNMPHGKALDTSHT-NVMAYSNCKVSGSNTY- 67 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC----C--EEEEECSS----SSHHHHHHHHHHTH-HHHHTCCCCEEEECCG-
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC----C--eEEEEeCC----HHHHHHHHHHHHhh-hhhcCCCcEEEECCCH-
Confidence 4899999999999999888763 65 1 39999975 22110 01111 011110111 1466
Q ss_pred HHhcccCCcEEEeccCCC---CC----------------CCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 399 DAVKVIKPTILIGSSGVG---RT----------------FTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~---g~----------------Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
+++++ .|++|=+.+.+ |. .-+++.+.|.++++.-+|+-.|||...
T Consensus 68 ~al~~--aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~ 131 (322)
T 1t2d_A 68 DDLAG--ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131 (322)
T ss_dssp GGGTT--CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH
T ss_pred HHhCC--CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHH
Confidence 77876 89988554333 31 357788888899988887778999843
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=91.27 E-value=1.7 Score=44.37 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=85.3
Q ss_pred eeeecCCCchHHHHHHHHcCCCeeeccCCCc---hHHHHHHHHHHHHHHh---------------------CCCcccceE
Q 007904 273 IQFEDFANHNAFELLAKYGTTHLVFNDDIQG---TASVVLAGVVAALKLI---------------------GGTLAEHRF 328 (585)
Q Consensus 273 Iq~EDf~~~~af~lL~ryr~~~~~FnDDiQG---TaaV~lAgll~A~r~~---------------------g~~l~d~ri 328 (585)
|+.-..+..|- .+-.--+..+++.|----. +|=-+++.+|+..|-. |..|.+.+|
T Consensus 80 I~~~~~G~d~i-d~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~v 158 (330)
T 2gcg_A 80 ISTMSVGIDHL-ALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTV 158 (330)
T ss_dssp EEESSSCCTTB-CHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEE
T ss_pred EEECCcccccc-cHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEE
Confidence 55555555442 1111113467777764333 3344788888887732 356889999
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcE
Q 007904 329 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 408 (585)
Q Consensus 329 v~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptv 408 (585)
.|+|.|..|..+|+.+.. .|+ +++.+|+.. .+ ....+ .+ ... ..++.|+++. .|+
T Consensus 159 gIIG~G~iG~~iA~~l~~-----~G~-------~V~~~d~~~----~~---~~~~~-~~--g~~-~~~l~e~l~~--aDv 213 (330)
T 2gcg_A 159 GIIGLGRIGQAIARRLKP-----FGV-------QRFLYTGRQ----PR---PEEAA-EF--QAE-FVSTPELAAQ--SDF 213 (330)
T ss_dssp EEECCSHHHHHHHHHHGG-----GTC-------CEEEEESSS----CC---HHHHH-TT--TCE-ECCHHHHHHH--CSE
T ss_pred EEECcCHHHHHHHHHHHH-----CCC-------EEEEECCCC----cc---hhHHH-hc--Cce-eCCHHHHHhh--CCE
Confidence 999999999999998764 264 588888641 11 11110 11 001 1278888886 898
Q ss_pred EEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 409 LIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 409 LIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
+|=.-. ..+++++++++.|. +..++.-.|+
T Consensus 214 Vi~~vp~~~~t~~~i~~~~~~~mk---~gailIn~sr 247 (330)
T 2gcg_A 214 IVVACSLTPATEGLCNKDFFQKMK---ETAVFINISR 247 (330)
T ss_dssp EEECCCCCTTTTTCBSHHHHHHSC---TTCEEEECSC
T ss_pred EEEeCCCChHHHHhhCHHHHhcCC---CCcEEEECCC
Confidence 874432 23577888888884 4567765554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.09 E-value=0.36 Score=47.79 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.|++.+++..|.+++..+++|+|||.+|..+|..|.+. | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~-----G-------~~V~v~~R~ 151 (271)
T 1nyt_A 103 GVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSL-----D-------CAVTITNRT 151 (271)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSS
T ss_pred HHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHc-----C-------CEEEEEECC
Confidence 567788888888899999999999998887777777542 5 468888874
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=90.92 E-value=0.65 Score=48.22 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++|++.||+|+|+|..|.-+|..|+.+ |+ .+|.++|.+
T Consensus 114 ~~L~~~~VlvvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 151 (353)
T 3h5n_A 114 DKLKNAKVVILGCGGIGNHVSVILATS-----GI------GEIILIDND 151 (353)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEEECC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHhC-----CC------CeEEEECCC
Confidence 457889999999999999999999876 87 789999986
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=90.77 E-value=0.18 Score=51.04 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=63.7
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC--CCcccCCCccCCchhchhhccccCC-CCCHHHHhc
Q 007904 327 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KGLIVSSRKDSLQHFKKPWAHEHEP-VNNLLDAVK 402 (585)
Q Consensus 327 riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~--~GLi~~~r~~~l~~~k~~fa~~~~~-~~~L~e~v~ 402 (585)
||+|.| +|..|..++..|+. .|+ ...++++|. +-=-.++-..++.+... +..+..- ..+ .++++
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~-----~~~-----~~el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~-~~a~~ 69 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIAL-----RDI-----ADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGG-YEDTA 69 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TTC-----CSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECC-GGGGT
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCC-HHHhC
Confidence 899999 99999998887754 254 256999997 31000000001211111 1111000 023 56777
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ |- .++++++.|.+++.+.+|+--|||.
T Consensus 70 ~--aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv 122 (303)
T 1o6z_A 70 G--SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV 122 (303)
T ss_dssp T--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSH
T ss_pred C--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChH
Confidence 6 89998665544 32 4678889999999999999999998
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.21 Score=51.33 Aligned_cols=106 Identities=15% Similarity=0.274 Sum_probs=64.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
..||.|+|||+.|..++-+|+.. |+ ...++|+|.+-=-.++...+|.+ ..+|..+..-..+..+++++
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~-----~~-----~~el~L~Di~~~~~~g~~~dl~~-~~~~~~~~~i~~~~~~a~~~- 76 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI-----AQEIGIVDIFKDKTKGDAIDLSN-ALPFTSPKKIYSAEYSDAKD- 76 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHT-TGGGSCCCEEEECCGGGGGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHcC-----CC-----CCEEEEEeCCchHhHHHHHHHHH-HHHhcCCeEEEECCHHHhCC-
Confidence 36999999999999988877542 54 26899999841000000000211 11222110000134677877
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+.. .-+++++.|.++++.-+|+-.|||.
T Consensus 77 -aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 128 (326)
T 2zqz_A 77 -ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV 128 (326)
T ss_dssp -CSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred -CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 9999865554422 2245777888899999999999998
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=90.68 E-value=1.7 Score=45.20 Aligned_cols=189 Identities=16% Similarity=0.129 Sum_probs=109.3
Q ss_pred CCCeeeccCCC---chHHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcchHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQ---GTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 292 ~~~~~FnDDiQ---GTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
..|++.|---- .+|=-+++-+|+..|-. |..|.+.++.|+|.|..|-.+|+.+...
T Consensus 116 ~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~ 195 (345)
T 4g2n_A 116 LGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGF 195 (345)
T ss_dssp TTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTT
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHC
Confidence 35556654322 34555788888887642 5678999999999999999999998642
Q ss_pred HHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHH
Q 007904 348 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEV 423 (585)
Q Consensus 348 ~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~ev 423 (585)
|+ +++.+|+... +.. .+.......+|.|+++. .|+++=.-- .-++|+++.
T Consensus 196 -----G~-------~V~~~dr~~~---------~~~---~~~g~~~~~~l~ell~~--sDvV~l~~Plt~~T~~li~~~~ 249 (345)
T 4g2n_A 196 -----GL-------AIHYHNRTRL---------SHA---LEEGAIYHDTLDSLLGA--SDIFLIAAPGRPELKGFLDHDR 249 (345)
T ss_dssp -----TC-------EEEEECSSCC---------CHH---HHTTCEECSSHHHHHHT--CSEEEECSCCCGGGTTCBCHHH
T ss_pred -----CC-------EEEEECCCCc---------chh---hhcCCeEeCCHHHHHhh--CCEEEEecCCCHHHHHHhCHHH
Confidence 64 6888887531 010 01111112589999986 898884432 237899999
Q ss_pred HHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCC-C--CcceeCCeeeCcCCCcccccchhhhHHHHHh
Q 007904 424 IEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP-F--DPFEYNGKVFVPGQANNAYIFPGFGLGLVIS 500 (585)
Q Consensus 424 i~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSP-f--~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~ 500 (585)
++.|. +..|+.=.|+-..--|---.+|+ .+|+.-.| |-. | +| . ....-=+..|+.+-|=+|-....
T Consensus 250 l~~mk---~gailIN~aRG~~vde~aL~~aL--~~g~i~gA-~LDVf~~EP-~---~~~pL~~~~nvilTPHia~~t~e- 318 (345)
T 4g2n_A 250 IAKIP---EGAVVINISRGDLINDDALIEAL--RSKHLFAA-GLDVFANEP-A---IDPRYRSLDNIFLTPHIGSATHE- 318 (345)
T ss_dssp HHHSC---TTEEEEECSCGGGBCHHHHHHHH--HHTSEEEE-EESCCTTTT-S---CCTTGGGCTTEEECCSCTTCBHH-
T ss_pred HhhCC---CCcEEEECCCCchhCHHHHHHHH--HhCCceEE-EecCCCCCC-C---CCchHHhCCCEEEcCccCcCCHH-
Confidence 99995 67788877753322222222333 34653322 211 1 11 0 01111234578888876532111
Q ss_pred CCcccCHHHHHHHHHHHHccc
Q 007904 501 GAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 501 ~a~~Itd~m~~aAA~aLA~~v 521 (585)
-.+.|...+++-|....
T Consensus 319 ----~~~~~~~~~~~ni~~~l 335 (345)
T 4g2n_A 319 ----TRDAMGWLLIQGIEALN 335 (345)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 12345555555555554
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=90.57 E-value=0.19 Score=54.70 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=73.5
Q ss_pred cceEEEeCcchHH--HHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc---ccCC---CCC
Q 007904 325 EHRFLFLGAGEAG--TGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEP---VNN 396 (585)
Q Consensus 325 d~riv~~GAGsAg--~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~---~~~~---~~~ 396 (585)
..||.|+|||+.| .++|..|+.. .++ +-..++|+|.+- ++.+........+.. .... ..+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~----~~l----~~~eV~L~Di~~----e~l~~~~~~~~~~l~~~~~~~~I~~ttD 70 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKT----PGL----SGSTVTLMDIDE----ERLDAILTIAKKYVEEVGADLKFEKTMN 70 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTC----GGG----TTCEEEEECSCH----HHHHHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc----CcC----CCCEEEEEeCCH----HHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence 4689999999965 4446666531 122 236799999852 111101111111110 0111 247
Q ss_pred HHHHhcccCCcEEEeccCC---------------CCCCC-------------------------HHHHHHHHcCCCCcEE
Q 007904 397 LLDAVKVIKPTILIGSSGV---------------GRTFT-------------------------KEVIEAMASFNEKPLI 436 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~---------------~g~Ft-------------------------~evi~~Ma~~~erPII 436 (585)
+.+++++ +|++|=+.+. .|.|. +++++.|.++|+.-+|
T Consensus 71 ~~eal~d--AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~i 148 (480)
T 1obb_A 71 LDDVIID--ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWY 148 (480)
T ss_dssp HHHHHTT--CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHhCC--CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEE
Confidence 8899987 8988855432 13333 6899999999999999
Q ss_pred EecCCCCCcCCCCHHHHhccccCcEEEecC
Q 007904 437 LALSNPTSQSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 437 FaLSNPt~~~E~tpeda~~wt~Grai~AsG 466 (585)
+-.|||.. +..+-+.++..- -+|.+|
T Consensus 149 i~~TNPvd---i~t~~~~k~p~~-rviG~c 174 (480)
T 1obb_A 149 LQAANPIF---EGTTLVTRTVPI-KAVGFC 174 (480)
T ss_dssp EECSSCHH---HHHHHHHHHSCS-EEEEEC
T ss_pred EEeCCcHH---HHHHHHHHCCCC-cEEecC
Confidence 99999982 233344445444 455554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.25 Score=47.96 Aligned_cols=100 Identities=14% Similarity=0.238 Sum_probs=62.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 400 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 400 (585)
.++...||.|+|+|..|..+|..+... |. +.++++|++ . +.+......+ ......++.|+
T Consensus 6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~-----g~------~~v~~~~~~----~---~~~~~~~~~~--g~~~~~~~~~~ 65 (266)
T 3d1l_A 6 RSIEDTPIVLIGAGNLATNLAKALYRK-----GF------RIVQVYSRT----E---ESARELAQKV--EAEYTTDLAEV 65 (266)
T ss_dssp -CGGGCCEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSS----H---HHHHHHHHHT--TCEEESCGGGS
T ss_pred cCCCCCeEEEEcCCHHHHHHHHHHHHC-----CC------eEEEEEeCC----H---HHHHHHHHHc--CCceeCCHHHH
Confidence 345567999999999999999988753 64 347888763 1 1111111111 00112467777
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 401 VKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
++. +|++|=+.. +.. .+++++.+.... +..||.-+||-.+
T Consensus 66 ~~~--~Dvvi~av~-~~~-~~~v~~~l~~~~~~~~ivv~~s~~~~ 106 (266)
T 3d1l_A 66 NPY--AKLYIVSLK-DSA-FAELLQGIVEGKREEALMVHTAGSIP 106 (266)
T ss_dssp CSC--CSEEEECCC-HHH-HHHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred hcC--CCEEEEecC-HHH-HHHHHHHHHhhcCCCcEEEECCCCCc
Confidence 764 898884433 333 388888887654 5678888888543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.45 E-value=0.26 Score=50.45 Aligned_cols=105 Identities=12% Similarity=0.232 Sum_probs=63.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
.||.|+|||+.|..++-+|+.. |+ ...|+|+|.+-=-.++-..+|.+ ..+|..+..-..+..+++++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~-----~~-----~~el~L~Di~~~~~~g~~~dl~~-~~~~~~~~~v~~~~~~a~~~-- 72 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ-----GI-----AEEFVIVDVVKDRTKGDALDLED-AQAFTAPKKIYSGEYSDCKD-- 72 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHG-GGGGSCCCEEEECCGGGGTT--
T ss_pred CEEEEECCCHHHHHHHHHHHcC-----CC-----CCEEEEEeCCchHHHHHHHHHHH-HHHhcCCeEEEECCHHHhCC--
Confidence 6999999999999988877553 54 26899999841000000001211 11232110000134677776
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 406 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 406 ptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+.. .-+++++.|.+++..-+|+-.|||.
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 124 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcH
Confidence 8999855544421 2345777888899999999999998
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=90.43 E-value=2.2 Score=45.61 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=81.0
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH---HHHHHc---CCC-e---eeccC----------CCchHHH
Q 007904 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYG---TTH-L---VFNDD----------IQGTASV 307 (585)
Q Consensus 248 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---lL~ryr---~~~-~---~FnDD----------iQGTaaV 307 (585)
+.+|-..|...|++++.+.-||..-|-=+|++.. ... +.+.|. ... + ++--+ -.-||-=
T Consensus 115 s~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~-~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~G 193 (419)
T 1gtm_A 115 SDREKERLARGYIRAIYDVISPYEDIPAPDVYTN-PQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARG 193 (419)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCC-HHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhH
Confidence 4456678899999999998899999999999873 222 345553 221 2 33222 1236666
Q ss_pred HHHHHHHHHHHhCCC-cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCccc
Q 007904 308 VLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIV 373 (585)
Q Consensus 308 ~lAgll~A~r~~g~~-l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~ 373 (585)
+.-++-.+++..|.. |++.++.|+|.|..|..+|+++... .|+ +++ +-|+.|-++
T Consensus 194 v~~~~~~~~~~~G~~~l~gktvgI~G~G~VG~~vA~~l~~~----~G~-------kVv~~sD~~g~~~ 250 (419)
T 1gtm_A 194 ASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSED----FGM-------KVVAVSDSKGGIY 250 (419)
T ss_dssp HHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHT----TCC-------EEEEEECSSCEEE
T ss_pred HHHHHHHHHHHhCCcccCCCEEEEEcCCHHHHHHHHHHHHh----cCC-------EEEEEeCCCcccc
Confidence 666778888899999 9999999999999999999988651 264 344 448877544
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.51 Score=42.16 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=28.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+.+...+|+|+|+|..|..+|+.|.. .| .+++++|++
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~-----~g-------~~V~vid~~ 51 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASS-----SG-------HSVVVVDKN 51 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESC
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEECC
Confidence 45567899999999999999988865 25 368889875
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=1.2 Score=44.08 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=56.1
Q ss_pred eeeecCCCchHHHHHHHHcC------CCeeeccCCCchHHHHHHHHHHHHHHh-CCCcccceEEEeC-cchHHHHHHHHH
Q 007904 273 IQFEDFANHNAFELLAKYGT------THLVFNDDIQGTASVVLAGVVAALKLI-GGTLAEHRFLFLG-AGEAGTGIAELI 344 (585)
Q Consensus 273 Iq~EDf~~~~af~lL~ryr~------~~~~FnDDiQGTaaV~lAgll~A~r~~-g~~l~d~riv~~G-AGsAg~GIA~ll 344 (585)
+.++-+.-..+.+++++-+. +..+| .|..|.- ..-.|++.+++.. +.+++..+++|.| +|.+|.+++..|
T Consensus 62 ~~~~G~~~~~~~~~~~~~~~~~~gavnt~~~-~~~~G~n-Td~~g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L 139 (287)
T 1lu9_A 62 IFVGGGDMAAGERVFEAVKKRFFGPFRVSCM-LDSNGSN-TTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALL 139 (287)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCBTTBCCEEE-ECSTTHH-HHHHHHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHH
T ss_pred EEEccchHHHHHHHHHHHHHhcCCCeEEEEe-cCCCcCC-chHHHHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHH
Confidence 33454445577777777652 23344 4445532 3456777888776 7889999999999 898888888877
Q ss_pred HHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 345 ALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 345 ~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+ .|. +++++|++
T Consensus 140 ~~-----~G~-------~V~i~~R~ 152 (287)
T 1lu9_A 140 AG-----EGA-------EVVLCGRK 152 (287)
T ss_dssp HH-----TTC-------EEEEEESS
T ss_pred HH-----CcC-------EEEEEECC
Confidence 65 363 38888874
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.05 E-value=0.37 Score=49.17 Aligned_cols=100 Identities=23% Similarity=0.381 Sum_probs=62.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhccccC-CCCCHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHE-PVNNLLDA 400 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~~~-~~~~L~e~ 400 (585)
.||.|+|||..|..+|-+|.. .|+ ...++++|.+ .++.+ +|.+. .+|.++.. ...+ .++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~-----~~~-----~~ev~L~Di~----~~~~~g~~~dl~~~-~~~~~~~~i~~~~-~~a 71 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMAL-----RQT-----ANELVLIDVF----KEKAIGEAMDINHG-LPFMGQMSLYAGD-YSD 71 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTC-----SSEEEEECCC-------CCHHHHHHTTS-CCCTTCEEEC--C-GGG
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCC----hHHHHHHHHHHHHh-HHhcCCeEEEECC-HHH
Confidence 589999999999998887654 254 2589999975 22211 01111 11211100 0123 566
Q ss_pred hcccCCcEEEeccCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~F--------------t~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++ .|++|=+.+.+..- -+++++.|.++++.-+|+-.|||.
T Consensus 72 ~~~--aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 126 (318)
T 1y6j_A 72 VKD--CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV 126 (318)
T ss_dssp GTT--CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSH
T ss_pred hCC--CCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcH
Confidence 776 99988555544211 268899999999999999999997
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.85 Score=46.14 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=64.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
++.+++.... +....+|.|+|+|..|..++..+... .|+ ++++++|+. .++ .......+..
T Consensus 122 ~~~la~~~la--~~~~~~igiIG~G~~g~~~a~~l~~~----~g~------~~V~v~dr~----~~~---~~~l~~~~~~ 182 (312)
T 2i99_A 122 VSAIATKFLK--PPSSEVLCILGAGVQAYSHYEIFTEQ----FSF------KEVRIWNRT----KEN---AEKFADTVQG 182 (312)
T ss_dssp HHHHHHHHHS--CTTCCEEEEECCSHHHHHHHHHHHHH----CCC------SEEEEECSS----HHH---HHHHHHHSSS
T ss_pred HHHHHHHHhC--CCCCcEEEEECCcHHHHHHHHHHHHh----CCC------cEEEEEcCC----HHH---HHHHHHHhhC
Confidence 3445553332 44668999999999999998888653 254 678888873 111 1111111110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCC--CCCcCCCCH
Q 007904 390 EHEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSN--PTSQSECTA 450 (585)
Q Consensus 390 ~~~~~~~L~e~v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~erPIIFaLSN--Pt~~~E~tp 450 (585)
......++.|+++. +|++|=+... ..+|.++ ...+.-+|+.+|+ |. .-|+.+
T Consensus 183 ~~~~~~~~~e~v~~--aDiVi~atp~~~~v~~~~------~l~~g~~vi~~g~~~p~-~~el~~ 237 (312)
T 2i99_A 183 EVRVCSSVQEAVAG--ADVIITVTLATEPILFGE------WVKPGAHINAVGASRPD-WRELDD 237 (312)
T ss_dssp CCEECSSHHHHHTT--CSEEEECCCCSSCCBCGG------GSCTTCEEEECCCCSTT-CCSBCH
T ss_pred CeEEeCCHHHHHhc--CCEEEEEeCCCCcccCHH------HcCCCcEEEeCCCCCCC-ceeccH
Confidence 01124689999986 8988855432 1233332 1235568888753 43 355543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.27 Score=51.41 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=33.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|++.||+|+|||..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~a-----GV------g~ItlvD~D 67 (340)
T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNG 67 (340)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCC
T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHc-----CC------CEEEEecCC
Confidence 57899999999999999999999875 87 899999986
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=0.34 Score=49.36 Aligned_cols=107 Identities=13% Similarity=0.250 Sum_probs=65.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc-cccCCCCCHHHHhc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVK 402 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa-~~~~~~~~L~e~v~ 402 (585)
...||.|+|||..|..+|-.|... |+ -..++++|.+-=..++...++.+. .+|. .+..-..+..++++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~-----~~-----~~ei~L~Di~~~~~~g~~~dl~~~-~~~~~~~~~v~~~~~~a~~ 73 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQ-----SI-----VDELVIIDLDTEKVRGDVMDLKHA-TPYSPTTVRVKAGEYSDCH 73 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-----CS-----CSEEEEECSCHHHHHHHHHHHHHH-GGGSSSCCEEEECCGGGGT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCChhHhhhhhhhHHhh-hhhcCCCeEEEeCCHHHhC
Confidence 446999999999999988876542 54 267999997510000000012221 2332 11000013467787
Q ss_pred ccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+.. .=+++++.|.++++.-+|+-.|||.
T Consensus 74 ~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 126 (317)
T 3d0o_A 74 D--ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPV 126 (317)
T ss_dssp T--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred C--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcH
Confidence 6 9998855554422 1246777888899999999999998
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=89.95 E-value=0.99 Score=46.04 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
++.+++..... ....++.|+|+|..|-.++..+... .++ ++++++|+. .++ .......|..
T Consensus 112 ~s~laa~~la~--~~~~~v~iIGaG~~a~~~~~al~~~----~~~------~~V~v~~r~----~~~---a~~la~~~~~ 172 (322)
T 1omo_A 112 AGGIAAKYLAR--KNSSVFGFIGCGTQAYFQLEALRRV----FDI------GEVKAYDVR----EKA---AKKFVSYCED 172 (322)
T ss_dssp HHHHHHHHHSC--TTCCEEEEECCSHHHHHHHHHHHHH----SCC------CEEEEECSS----HHH---HHHHHHHHHH
T ss_pred HHHHHHHhccC--CCCCEEEEEcCcHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHh
Confidence 34555554432 3567999999999998888777653 233 679988873 222 2222222221
Q ss_pred ---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecC--CCCCcCCCCHH
Q 007904 390 ---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS--NPTSQSECTAE 451 (585)
Q Consensus 390 ---~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaLS--NPt~~~E~tpe 451 (585)
+.. ..++.|++ . .|++|-++..+ ..|+.+++ .+.-.|+.++ +|. +.|+.++
T Consensus 173 ~~~~~~-~~~~~e~v-~--aDvVi~aTp~~~pv~~~~~l------~~G~~V~~ig~~~p~-~~el~~~ 229 (322)
T 1omo_A 173 RGISAS-VQPAEEAS-R--CDVLVTTTPSRKPVVKAEWV------EEGTHINAIGADGPG-KQELDVE 229 (322)
T ss_dssp TTCCEE-ECCHHHHT-S--SSEEEECCCCSSCCBCGGGC------CTTCEEEECSCCSTT-CCCBCHH
T ss_pred cCceEE-ECCHHHHh-C--CCEEEEeeCCCCceecHHHc------CCCeEEEECCCCCCC-ccccCHH
Confidence 112 46788988 5 89998766533 23443332 2556888883 455 6777764
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=0.65 Score=46.94 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=60.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC----chhchhhcccc--CCCCCHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL----QHFKKPWAHEH--EPVNNLLDA 400 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l----~~~k~~fa~~~--~~~~~L~e~ 400 (585)
||.|+|||..|.++|..+... |+ -.+++++|.+- ++-+.+ .+....+.... ....++.+
T Consensus 2 kI~VIGaG~vG~~la~~la~~-----~~-----g~~V~l~D~~~----~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~- 66 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEK-----QL-----ARELVLLDVVE----GIPQGKALDMYESGPVGLFDTKVTGSNDYAD- 66 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSS----SHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCh----hHHHHHHHhHHhhhhcccCCcEEEECCCHHH-
Confidence 799999999999999887652 22 25799999862 111101 11000010000 01135655
Q ss_pred hcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++. .|++|=+.+.+ |- +-+++++.|+++++.-+|+-.|||.
T Consensus 67 l~~--aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~ 121 (310)
T 1guz_A 67 TAN--SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121 (310)
T ss_dssp GTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSH
T ss_pred HCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Confidence 665 88887554332 21 1157788888888888988899998
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.81 E-value=1.9 Score=43.79 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEE
Q 007904 304 TASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 365 (585)
Q Consensus 304 TaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~l 365 (585)
+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|..+|+.+... |+ +++.
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~-----G~-------~V~~ 170 (307)
T 1wwk_A 103 VAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANAL-----GM-------NILL 170 (307)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 344467888887763 34678999999999999999999988653 64 5888
Q ss_pred EcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 366 VDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 366 vD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+|+.. .. . .+.+ .-...+|.|+++. .|+++=.-- ..++++++.++.|. +.-++.=.|
T Consensus 171 ~d~~~----~~-----~----~~~~~g~~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~l~~mk---~ga~lin~a 232 (307)
T 1wwk_A 171 YDPYP----NE-----E----RAKEVNGKFVDLETLLKE--SDVVTIHVPLVESTYHLINEERLKLMK---KTAILINTS 232 (307)
T ss_dssp ECSSC----CH-----H----HHHHTTCEECCHHHHHHH--CSEEEECCCCSTTTTTCBCHHHHHHSC---TTCEEEECS
T ss_pred ECCCC----Ch-----h----hHhhcCccccCHHHHHhh--CCEEEEecCCChHHhhhcCHHHHhcCC---CCeEEEECC
Confidence 88741 10 0 1111 0112378898886 898885421 24688899999885 566888777
Q ss_pred C
Q 007904 441 N 441 (585)
Q Consensus 441 N 441 (585)
.
T Consensus 233 r 233 (307)
T 1wwk_A 233 R 233 (307)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.35 Score=50.01 Aligned_cols=106 Identities=15% Similarity=0.255 Sum_probs=65.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
..||.|+|||..|..+|..|+.. |+ ...+.++|..-=..++-.-+|.+. .+|..+..-..+..+++++
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~-----~~-----~~el~l~D~~~~k~~g~a~DL~~~-~~~~~~~~i~~~~~~a~~~- 76 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI-----AQEIGIVDIFKDKTKGDAIDLEDA-LPFTSPKKIYSAEYSDAKD- 76 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHTT-GGGSCCCEEEECCGGGGTT-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEeCChHHHHHHHhhHhhh-hhhcCCcEEEECcHHHhcC-
Confidence 46899999999999999888764 65 258999998310000000012211 1232110001233566776
Q ss_pred CCcEEEeccCCC---C-----CC------CHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVG---R-----TF------TKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~---g-----~F------t~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ | +| -+++++.|.++++.-+|+-.|||.
T Consensus 77 -aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPv 128 (326)
T 3vku_A 77 -ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV 128 (326)
T ss_dssp -CSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSH
T ss_pred -CCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCch
Confidence 88877444433 2 23 368889999999999999999998
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=89.40 E-value=0.22 Score=53.66 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=75.2
Q ss_pred ceEEEeCcchH-HHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc--c-cCC---CCCHH
Q 007904 326 HRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--E-HEP---VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsA-g~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~--~-~~~---~~~L~ 398 (585)
.||.|+|||+. |.+++..|+.. ..++. -..++|+|.+-- .++.+.+......+.. . ... ..++.
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~---~~~l~----~~ev~L~Di~~~--~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~ 78 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKR---YHELP----VGELWLVDIPEG--KEKLEIVGALAKRMVEKAGVPIEIHLTLDRR 78 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT---TTTCC----EEEEEEECCGGG--HHHHHHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCCCC----CCEEEEEEcCCC--hHHHHHHHHHHHHHHhhcCCCcEEEEeCCHH
Confidence 69999999997 55555555431 12442 267999998520 0111101111112211 1 111 25788
Q ss_pred HHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~----------------------------------Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+++++ .|++|=..+.++. .=+++++.|.++|+.-+|+-.|||..
T Consensus 79 eal~g--AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd 156 (450)
T 1s6y_A 79 RALDG--ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG 156 (450)
T ss_dssp HHHTT--CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH
T ss_pred HHhCC--CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH
Confidence 99997 9999866655421 13588999999999999999999982
Q ss_pred cCCCCHHHHhccccCcEEEecC
Q 007904 445 QSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsG 466 (585)
+..+-+++.+.-.-+|.+|
T Consensus 157 ---ivT~a~~k~~p~~rViG~c 175 (450)
T 1s6y_A 157 ---MVTEAVLRYTKQEKVVGLC 175 (450)
T ss_dssp ---HHHHHHHHHCCCCCEEECC
T ss_pred ---HHHHHHHHhCCCCCEEEeC
Confidence 2333344555332566654
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.27 Score=49.05 Aligned_cols=103 Identities=14% Similarity=0.277 Sum_probs=62.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc-hhchhhcccc--CCCCCHHHHh
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-HFKKPWAHEH--EPVNNLLDAV 401 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~-~~k~~fa~~~--~~~~~L~e~v 401 (585)
..||.|+|||+.|..+|..|... |. ..+++++|++---.++ ..+. .+..++..+. ....+. +++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~-----g~-----~~~V~l~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~-~~~ 73 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR-----GI-----AREIVLEDIAKERVEA--EVLDMQHGSSFYPTVSIDGSDDP-EIC 73 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSHHHHHH--HHHHHHHTGGGSTTCEEEEESCG-GGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCChhHHHH--HHHHHHhhhhhcCCeEEEeCCCH-HHh
Confidence 36899999999999999887653 53 1479999986300000 0010 0111121110 000133 455
Q ss_pred cccCCcEEEeccCCCCCCCH----------------HHHHHHHcCCCCcEEEecCCCCC
Q 007904 402 KVIKPTILIGSSGVGRTFTK----------------EVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~----------------evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+. +|++|=+.+.+. ++ ++++.|+++++..+|+.++||..
T Consensus 74 ~~--aD~Vii~v~~~~--~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~ 128 (319)
T 1lld_A 74 RD--ADMVVITAGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 128 (319)
T ss_dssp TT--CSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH
T ss_pred CC--CCEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchH
Confidence 54 898885554332 23 88999988888889999999984
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=89.19 E-value=0.5 Score=48.34 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=64.8
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh-ccccCCCCCHHHHhcc
Q 007904 326 HRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f-a~~~~~~~~L~e~v~~ 403 (585)
.||+|.| +|..|..++..|.. .|+ ...++++|.+.- .+...+|.+...+. .+......++.+++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~-----~g~-----~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~g 76 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKM-----NPL-----VSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTG 76 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHH-----CTT-----EEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCC
Confidence 5899999 79999998887653 354 256999996421 00000011100000 0000011257788887
Q ss_pred cCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~g--------------~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+. ..++++++.|.+++.+.+|+--|||.
T Consensus 77 --aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv 128 (326)
T 1smk_A 77 --MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPV 128 (326)
T ss_dssp --CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred --CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCch
Confidence 899885554442 24678889999999899999999998
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=88.96 E-value=2.2 Score=43.60 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=66.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc----ccCCCCCHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNLLD 399 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~----~~~~~~~L~e 399 (585)
...+++|+|+|..|-.+++.+... .++ ++|+++|+. +.+ .....+.. +.... ++.|
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~----~~~------~~V~v~~r~------~a~---~la~~l~~~~g~~~~~~-~~~e 179 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSAR----FAL------EAILVHDPY------ASP---EILERIGRRCGVPARMA-APAD 179 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHH----SCC------CEEEEECTT------CCH---HHHHHHHHHHTSCEEEC-CHHH
T ss_pred CCcEEEEECccHHHHHHHHHHHHh----CCC------cEEEEECCc------HHH---HHHHHHHHhcCCeEEEe-CHHH
Confidence 467999999999998888777653 243 789999996 211 22222221 11123 8999
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCC--CCCcCCCCHHHH
Q 007904 400 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSN--PTSQSECTAEEA 453 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaLSN--Pt~~~E~tpeda 453 (585)
+++. .|++|-++... .+|..++++ +..+|..++. |. +-|+.++-.
T Consensus 180 av~~--aDIVi~aT~s~~pvl~~~~l~------~G~~V~~vGs~~p~-~~El~~~~~ 227 (313)
T 3hdj_A 180 IAAQ--ADIVVTATRSTTPLFAGQALR------AGAFVGAIGSSLPH-TRELDDEAL 227 (313)
T ss_dssp HHHH--CSEEEECCCCSSCSSCGGGCC------TTCEEEECCCSSTT-CCCCCHHHH
T ss_pred HHhh--CCEEEEccCCCCcccCHHHcC------CCcEEEECCCCCCc-hhhcCHHHH
Confidence 9987 99999775433 255555443 6778888875 44 578888754
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=88.92 E-value=2.9 Score=42.78 Aligned_cols=137 Identities=10% Similarity=0.094 Sum_probs=88.2
Q ss_pred eeeecCCCchHHHHHHHHcCCCeeeccCCCch---HHHHHHHHHHHHHH-------------------hCCCcccceEEE
Q 007904 273 IQFEDFANHNAFELLAKYGTTHLVFNDDIQGT---ASVVLAGVVAALKL-------------------IGGTLAEHRFLF 330 (585)
Q Consensus 273 Iq~EDf~~~~af~lL~ryr~~~~~FnDDiQGT---aaV~lAgll~A~r~-------------------~g~~l~d~riv~ 330 (585)
|+.--.+..|- .+-.--+..+.+.|---..+ |=-+++.+|+..|. .|..|.+.+|.|
T Consensus 73 I~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgI 151 (331)
T 1xdw_A 73 ILTRTAGTDHI-DKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGV 151 (331)
T ss_dssp EEESSSCCTTB-CHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEE
T ss_pred EEEcccccccc-CHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEE
Confidence 55555554442 11111234677777533333 44478888887761 234688999999
Q ss_pred eCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEE
Q 007904 331 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILI 410 (585)
Q Consensus 331 ~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLI 410 (585)
+|.|..|..+|+.+... |+ +++.+|+.. .. . +. .++. ..+|.|+++. .|+++
T Consensus 152 iG~G~IG~~~A~~l~~~-----G~-------~V~~~d~~~----~~-~-~~----~~~~----~~~l~ell~~--aDvV~ 203 (331)
T 1xdw_A 152 VGLGRIGRVAAQIFHGM-----GA-------TVIGEDVFE----IK-G-IE----DYCT----QVSLDEVLEK--SDIIT 203 (331)
T ss_dssp ECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC----CC-S-CT----TTCE----ECCHHHHHHH--CSEEE
T ss_pred ECcCHHHHHHHHHHHHC-----CC-------EEEEECCCc----cH-H-HH----hccc----cCCHHHHHhh--CCEEE
Confidence 99999999999988643 64 588888752 11 1 11 1111 2378899986 89988
Q ss_pred ecc----CCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 411 GSS----GVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 411 G~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
=.- ...++|+++.++.|. +.-++.=.|.
T Consensus 204 ~~~p~t~~t~~li~~~~l~~mk---~ga~lin~sr 235 (331)
T 1xdw_A 204 IHAPYIKENGAVVTRDFLKKMK---DGAILVNCAR 235 (331)
T ss_dssp ECCCCCTTTCCSBCHHHHHTSC---TTEEEEECSC
T ss_pred EecCCchHHHHHhCHHHHhhCC---CCcEEEECCC
Confidence 642 234689999999885 5678888874
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=88.88 E-value=2 Score=41.25 Aligned_cols=92 Identities=11% Similarity=0.207 Sum_probs=61.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
..||.|+|+|..|..+|..|... |.. ...+++++|+. ..+ + ......++.|+++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~-----g~~---~~~~v~~~~~~----~~~----------~--g~~~~~~~~~~~~~- 58 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA-----NII---KKENLFYYGPS----KKN----------T--TLNYMSSNEELARH- 58 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH-----TSS---CGGGEEEECSS----CCS----------S--SSEECSCHHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCC---CCCeEEEEeCC----ccc----------C--ceEEeCCHHHHHhc-
Confidence 35899999999999999988764 520 01368888874 111 0 00112467788875
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+|++| ++..+ -..+++++.+..+.+..+|+.++|..+
T Consensus 59 -~D~vi-~~v~~-~~~~~v~~~l~~~l~~~~vv~~~~gi~ 95 (262)
T 2rcy_A 59 -CDIIV-CAVKP-DIAGSVLNNIKPYLSSKLLISICGGLN 95 (262)
T ss_dssp -CSEEE-ECSCT-TTHHHHHHHSGGGCTTCEEEECCSSCC
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 88777 33333 357888888876666678888888875
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=88.86 E-value=4.4 Score=43.31 Aligned_cols=192 Identities=13% Similarity=0.150 Sum_probs=116.6
Q ss_pred cCCCeeeccCCC---chHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 007904 291 GTTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 349 (585)
Q Consensus 291 r~~~~~FnDDiQ---GTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 349 (585)
+..|++||---- .+|=-++|.+|+..|- .+..|.+.++.|+|.|..|..+|+.+...
T Consensus 101 ~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG~~vA~~l~~~-- 178 (416)
T 3k5p_A 101 KRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESL-- 178 (416)
T ss_dssp HTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHHHHHHHHHHT--
T ss_pred hcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHHHHHHHHHHHC--
Confidence 357888886433 3455678888888763 24678999999999999999999988653
Q ss_pred hhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 007904 350 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 425 (585)
Q Consensus 350 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~ 425 (585)
|+ +++.+|+..- .... -+ ....+|.|+++. .|+++=.-- ..+.|+++.++
T Consensus 179 ---G~-------~V~~yd~~~~--------~~~~---~~---~~~~sl~ell~~--aDvV~lhvPlt~~T~~li~~~~l~ 232 (416)
T 3k5p_A 179 ---GM-------TVRYYDTSDK--------LQYG---NV---KPAASLDELLKT--SDVVSLHVPSSKSTSKLITEAKLR 232 (416)
T ss_dssp ---TC-------EEEEECTTCC--------CCBT---TB---EECSSHHHHHHH--CSEEEECCCC-----CCBCHHHHH
T ss_pred ---CC-------EEEEECCcch--------hccc---Cc---EecCCHHHHHhh--CCEEEEeCCCCHHHhhhcCHHHHh
Confidence 75 6888987411 1100 01 124679999987 898884321 23689999999
Q ss_pred HHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCC-CC--cceeCCee-eCcCCCcccccchhhhHHHHHhC
Q 007904 426 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP-FD--PFEYNGKV-FVPGQANNAYIFPGFGLGLVISG 501 (585)
Q Consensus 426 ~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSP-f~--pv~~~G~~-~~p~Q~NN~yiFPGiglG~l~~~ 501 (585)
.|. +..++.=.|.=..--|---.+|+ ..|+. .+.|-. |+ |..-+... ..--+..|+.+-|=+|-...-++
T Consensus 233 ~mk---~gailIN~aRG~vvd~~aL~~aL--~~g~i-~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~ 306 (416)
T 3k5p_A 233 KMK---KGAFLINNARGSDVDLEALAKVL--QEGHL-AGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQ 306 (416)
T ss_dssp HSC---TTEEEEECSCTTSBCHHHHHHHH--HTTSE-EEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHH
T ss_pred hCC---CCcEEEECCCChhhhHHHHHHHH--HcCCc-cEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHH
Confidence 995 67788888875432332233444 35653 322322 21 11100000 01124568999998764332222
Q ss_pred CcccCHHHHHHHHHHHHccc
Q 007904 502 AIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 502 a~~Itd~m~~aAA~aLA~~v 521 (585)
+.|...+++.|.+..
T Consensus 307 -----~~~~~~~~~nl~~~l 321 (416)
T 3k5p_A 307 -----ERIGTEVTRKLVEYS 321 (416)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 446666677776665
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=88.85 E-value=2.7 Score=43.70 Aligned_cols=174 Identities=15% Similarity=0.064 Sum_probs=101.4
Q ss_pred CCCeeeccCCC---chHHHHHHHHHHHHHH--------------------hCCCcccceEEEeCcchHHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQ---GTASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 348 (585)
Q Consensus 292 ~~~~~FnDDiQ---GTaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~ 348 (585)
..|.+.|---- .+|=-+++-+|+..|- .+..|.+.+|.|+|.|..|..+|+.+...
T Consensus 108 ~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~- 186 (351)
T 3jtm_A 108 AGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPF- 186 (351)
T ss_dssp TTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGG-
T ss_pred cCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHC-
Confidence 45666654322 2344578888888763 25679999999999999999999988643
Q ss_pred HhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHH
Q 007904 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVI 424 (585)
Q Consensus 349 ~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi 424 (585)
|+ +++.+|+... . ....+ .. ......+|.|+++. .|+++=.- ...++|+++.+
T Consensus 187 ----G~-------~V~~~dr~~~----~---~~~~~-~~--g~~~~~~l~ell~~--aDvV~l~~Plt~~t~~li~~~~l 243 (351)
T 3jtm_A 187 ----GC-------NLLYHDRLQM----A---PELEK-ET--GAKFVEDLNEMLPK--CDVIVINMPLTEKTRGMFNKELI 243 (351)
T ss_dssp ----CC-------EEEEECSSCC----C---HHHHH-HH--CCEECSCHHHHGGG--CSEEEECSCCCTTTTTCBSHHHH
T ss_pred ----CC-------EEEEeCCCcc----C---HHHHH-hC--CCeEcCCHHHHHhc--CCEEEECCCCCHHHHHhhcHHHH
Confidence 75 4888887521 0 11100 00 01123579999987 89988432 23368999999
Q ss_pred HHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCccee-CCeeeCcCCCcccccchhhhHH
Q 007904 425 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLG 496 (585)
Q Consensus 425 ~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~-~G~~~~p~Q~NN~yiFPGiglG 496 (585)
+.|. +..+|.=.|+-..--|---.+|+ .+|+.--|.--=|++--. ... .--+..|+.+-|=++-.
T Consensus 244 ~~mk---~gailIN~aRG~~vde~aL~~aL--~~g~i~ga~lDV~~~EP~~~~~--pL~~~~nvilTPHia~~ 309 (351)
T 3jtm_A 244 GKLK---KGVLIVNNARGAIMERQAVVDAV--ESGHIGGYSGDVWDPQPAPKDH--PWRYMPNQAMTPHTSGT 309 (351)
T ss_dssp HHSC---TTEEEEECSCGGGBCHHHHHHHH--HHTSEEEEEESCCSSSSCCTTC--GGGTSTTBCCCCSCGGG
T ss_pred hcCC---CCCEEEECcCchhhCHHHHHHHH--HhCCccEEEeCCCCCCCCCCCC--hhhcCCCEEECCcCCCC
Confidence 9996 67788877764322232233343 346544332222211100 000 01134577777776543
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=88.83 E-value=1.8 Score=45.14 Aligned_cols=145 Identities=13% Similarity=0.169 Sum_probs=90.8
Q ss_pred eeeeecCCCchH-HHHHHHHcCCCeeeccCCC---chHHHHHHHHHHHHHH--------------------hCCCcccce
Q 007904 272 LIQFEDFANHNA-FELLAKYGTTHLVFNDDIQ---GTASVVLAGVVAALKL--------------------IGGTLAEHR 327 (585)
Q Consensus 272 lIq~EDf~~~~a-f~lL~ryr~~~~~FnDDiQ---GTaaV~lAgll~A~r~--------------------~g~~l~d~r 327 (585)
+|+.-..+..|- ...+.+.+..+.+.|---- .+|=-+++.+|+..|- .+..|.+.+
T Consensus 87 ~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~t 166 (364)
T 2j6i_A 87 LVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKT 166 (364)
T ss_dssp EEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCE
T ss_pred EEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCE
Confidence 366665555553 2223332335777764322 2344468888888762 356899999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCc
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPT 407 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkpt 407 (585)
|.|+|.|..|..+|+.+... |+ ++++.+|+... ..... ..+ ......+|.|+++. .|
T Consensus 167 vgIIG~G~IG~~vA~~l~~~-----G~------~~V~~~d~~~~-------~~~~~-~~~--g~~~~~~l~ell~~--aD 223 (364)
T 2j6i_A 167 IATIGAGRIGYRVLERLVPF-----NP------KELLYYDYQAL-------PKDAE-EKV--GARRVENIEELVAQ--AD 223 (364)
T ss_dssp EEEECCSHHHHHHHHHHGGG-----CC------SEEEEECSSCC-------CHHHH-HHT--TEEECSSHHHHHHT--CS
T ss_pred EEEECcCHHHHHHHHHHHhC-----CC------cEEEEECCCcc-------chhHH-Hhc--CcEecCCHHHHHhc--CC
Confidence 99999999999999988642 64 34888886421 01100 111 00112478898885 89
Q ss_pred EEEeccCC----CCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 408 ILIGSSGV----GRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 408 vLIG~S~~----~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
+++=.--. .++|+++.+..|. +.-+|.-.|+-
T Consensus 224 vV~l~~P~t~~t~~li~~~~l~~mk---~ga~lIn~arG 259 (364)
T 2j6i_A 224 IVTVNAPLHAGTKGLINKELLSKFK---KGAWLVNTARG 259 (364)
T ss_dssp EEEECCCCSTTTTTCBCHHHHTTSC---TTEEEEECSCG
T ss_pred EEEECCCCChHHHHHhCHHHHhhCC---CCCEEEECCCC
Confidence 98854322 2688999888885 66788888763
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=2.2 Score=44.03 Aligned_cols=107 Identities=16% Similarity=0.266 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 304 TASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 304 TaaV~lAgll~A~r~-------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|..+|+.+.. .|+ +++
T Consensus 124 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~-----~G~-------~V~ 191 (333)
T 3ba1_A 124 VADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEA-----FDC-------PIS 191 (333)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHHHHHHT-----TTC-------CEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEE
Confidence 344467777777653 2457889999999999999999998864 264 588
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
.+|+..- . .. .+ . ...+|.|+++. .|+++=.-- ..++++++.++.|. +..+|.-.|
T Consensus 192 ~~dr~~~----~---~~----g~-~---~~~~l~ell~~--aDvVil~vP~~~~t~~li~~~~l~~mk---~gailIn~s 251 (333)
T 3ba1_A 192 YFSRSKK----P---NT----NY-T---YYGSVVELASN--SDILVVACPLTPETTHIINREVIDALG---PKGVLINIG 251 (333)
T ss_dssp EECSSCC----T---TC----CS-E---EESCHHHHHHT--CSEEEECSCCCGGGTTCBCHHHHHHHC---TTCEEEECS
T ss_pred EECCCch----h---cc----Cc-e---ecCCHHHHHhc--CCEEEEecCCChHHHHHhhHHHHhcCC---CCCEEEECC
Confidence 8887521 1 11 01 0 12478898886 898874421 23688889999885 566777666
Q ss_pred CC
Q 007904 441 NP 442 (585)
Q Consensus 441 NP 442 (585)
.-
T Consensus 252 rG 253 (333)
T 3ba1_A 252 RG 253 (333)
T ss_dssp CG
T ss_pred CC
Confidence 54
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=0.82 Score=49.33 Aligned_cols=102 Identities=11% Similarity=0.159 Sum_probs=63.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 400 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~ 400 (585)
.++..+|.|+|+|..|..+|..|.+. |. +++++|+. . +........+.. ......++.|+
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~-----G~-------~V~v~~r~----~---~~~~~l~~~~~~~gi~~~~s~~e~ 72 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESR-----GY-------TVSIFNRS----R---EKTEEVIAENPGKKLVPYYTVKEF 72 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTT-----TC-------CEEEECSS----H---HHHHHHHHHSTTSCEEECSSHHHH
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhC-----CC-------eEEEEeCC----H---HHHHHHHhhCCCCCeEEeCCHHHH
Confidence 35678899999999999999998753 63 57788763 1 111111111100 01123578888
Q ss_pred hccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 401 VKVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 401 v~~v-kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
++.. +||++| ++-+.+...+++++.+.... +.-||.-+||-.
T Consensus 73 v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 73 VESLETPRRIL-LMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp HHTBCSSCEEE-ECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred HhCCCCCCEEE-EECCCHHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 8753 478777 44444456788888887654 356888899865
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.47 Score=48.42 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=34.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++|++.||+|+|+|..|.-+|..|+.+ |+ .+|.++|.+
T Consensus 32 ~kL~~~~VlVvGaGGlGs~va~~La~a-----GV------G~i~lvD~D 69 (292)
T 3h8v_A 32 EKIRTFAVAIVGVGGVGSVTAEMLTRC-----GI------GKLLLFDYD 69 (292)
T ss_dssp CGGGGCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHHhCCeEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 579999999999999999999999886 87 799999987
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.35 Score=49.13 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=64.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~v 404 (585)
||.|+|||..|.++|..|... |+ ...+.++|.+-=..++-.-++.+....|-.+. ....+ .+++++
T Consensus 2 kI~ViGaG~vG~~la~~l~~~-----~~-----~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~- 69 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLN-----LD-----VDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG- 69 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC-----CSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC-
Confidence 799999999999999887653 54 24799999852111100001211111121110 01134 778887
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .-+++++.|.++|+.-+|+-.|||.
T Consensus 70 -aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPv 121 (294)
T 1oju_A 70 -SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121 (294)
T ss_dssp -CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred -CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcc
Confidence 89887444433 32 1257778899999999999999998
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.69 E-value=0.49 Score=47.75 Aligned_cols=98 Identities=22% Similarity=0.321 Sum_probs=56.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch-hhcc----ccCCCCCHHH
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWAH----EHEPVNNLLD 399 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~fa~----~~~~~~~L~e 399 (585)
+.||.|+|+|+.|..+|..|.++ | .+++++|+..- +.+.+..... .|-. ......++.|
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~-----G-------~~V~~~~r~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 77 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHEN-----G-------EEVILWARRKE----IVDLINVSHTSPYVEESKITVRATNDLEE 77 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSHH----HHHHHHHHSCBTTBTTCCCCSEEESCGGG
T ss_pred CCcEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEeCCHH----HHHHHHHhCCcccCCCCeeeEEEeCCHHH
Confidence 57999999999999999998763 5 46888887410 0000110000 0000 0001135556
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 400 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
++. +|++|= +..+ -..+++++.++. +..+|..++|....
T Consensus 78 -~~~--aDvVil-~vk~-~~~~~v~~~l~~--~~~~vv~~~nGi~~ 116 (335)
T 1z82_A 78 -IKK--EDILVI-AIPV-QYIREHLLRLPV--KPSMVLNLSKGIEI 116 (335)
T ss_dssp -CCT--TEEEEE-CSCG-GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred -hcC--CCEEEE-ECCH-HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence 553 676652 2222 467788777654 55678889987653
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=88.60 E-value=1.5 Score=45.20 Aligned_cols=188 Identities=15% Similarity=0.229 Sum_probs=109.2
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
..|++.|--- +.+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|-.+|+.+...
T Consensus 83 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~~--- 159 (324)
T 3evt_A 83 AGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASAL--- 159 (324)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHHT---
T ss_pred CCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHHHHHHHhC---
Confidence 4677777542 22444467777777652 26679999999999999999999988653
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 007904 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 426 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~ 426 (585)
|+ +++.+|+..- ..+.+.. .+ ...+|.|+++. .|+++=.- ...++|+++.+..
T Consensus 160 --G~-------~V~~~dr~~~----~~~~~~~---~~-----~~~~l~ell~~--aDvV~l~lPlt~~t~~li~~~~l~~ 216 (324)
T 3evt_A 160 --GM-------HVIGVNTTGH----PADHFHE---TV-----AFTATADALAT--ANFIVNALPLTPTTHHLFSTELFQQ 216 (324)
T ss_dssp --TC-------EEEEEESSCC----CCTTCSE---EE-----EGGGCHHHHHH--CSEEEECCCCCGGGTTCBSHHHHHT
T ss_pred --CC-------EEEEECCCcc----hhHhHhh---cc-----ccCCHHHHHhh--CCEEEEcCCCchHHHHhcCHHHHhc
Confidence 75 6888887531 1011111 11 12468888887 89888432 2246899999998
Q ss_pred HHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEe-----cCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhC
Q 007904 427 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA-----SGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISG 501 (585)
Q Consensus 427 Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~A-----sGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~ 501 (585)
|. +..++.=.|.-..--|-.-.+|++ +|+.-.| ..-|.++ + ..-=+..|+.+-|=++-.
T Consensus 217 mk---~gailIN~aRG~~vd~~aL~~aL~--~g~i~gA~lDV~~~EPl~~----~--~pL~~~~nvilTPHia~~----- 280 (324)
T 3evt_A 217 TK---QQPMLINIGRGPAVDTTALMTALD--HHQLSMAALDVTEPEPLPT----D--HPLWQRDDVLITPHISGQ----- 280 (324)
T ss_dssp CC---SCCEEEECSCGGGBCHHHHHHHHH--TTSCSEEEESSCSSSSCCT----T--CGGGGCSSEEECCSCTTC-----
T ss_pred CC---CCCEEEEcCCChhhhHHHHHHHHH--hCCceEEEeCCCCCCCCCC----C--ChhhcCCCEEEcCccccC-----
Confidence 85 667888777633222222223332 4543211 1112211 0 011134577888876521
Q ss_pred CcccCHHHHHHHHHHHHccc
Q 007904 502 AIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 502 a~~Itd~m~~aAA~aLA~~v 521 (585)
...-.+.|...+++-|....
T Consensus 281 t~~~~~~~~~~~~~nl~~~l 300 (324)
T 3evt_A 281 IAHFRATVFPIFAANFAQFV 300 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 12233566666666666654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.53 E-value=1 Score=46.91 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=61.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNL 397 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~~L 397 (585)
.+...+++|+|+|..|..+|+.+.. .|. +++.+|+.. .+ +...+..+... .....++
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~-----~Ga-------~V~~~d~~~----~~---l~~~~~~~g~~~~~~~~~~~~l 225 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANG-----MGA-------TVTVLDINI----DK---LRQLDAEFCGRIHTRYSSAYEL 225 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESCH----HH---HHHHHHHTTTSSEEEECCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEeCCH----HH---HHHHHHhcCCeeEeccCCHHHH
Confidence 4778999999999999999988865 263 588888741 11 11111111110 0012357
Q ss_pred HHHhcccCCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEecC
Q 007904 398 LDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~-----g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
.+.++. .|++|.+...+ .+++++.++.|. +.-+|.=+|
T Consensus 226 ~~~l~~--aDvVi~~~~~p~~~t~~li~~~~l~~mk---~g~~iV~va 268 (377)
T 2vhw_A 226 EGAVKR--ADLVIGAVLVPGAKAPKLVSNSLVAHMK---PGAVLVDIA 268 (377)
T ss_dssp HHHHHH--CSEEEECCCCTTSCCCCCBCHHHHTTSC---TTCEEEEGG
T ss_pred HHHHcC--CCEEEECCCcCCCCCcceecHHHHhcCC---CCcEEEEEe
Confidence 777875 89999876544 457899998885 445666666
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=88.26 E-value=0.33 Score=41.59 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=52.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHH-
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA- 400 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~- 400 (585)
++..+|+|+|+|..|..+++.+.. .|. +++++|++. .+.+.+......+.. +......|.++
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~-----~g~-------~v~~~d~~~----~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 67 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHR-----MGH-------EVLAVDINE----EKVNAYASYATHAVIANATEENELLSLG 67 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHH-----TTC-------CCEEEESCH----HHHHTTTTTCSEEEECCTTCHHHHHTTT
T ss_pred CcCCcEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCH----HHHHHHHHhCCEEEEeCCCCHHHHHhcC
Confidence 455789999999999999888765 252 578888742 111111111001111 11111123222
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++ ++|++|=+.+..-..+..+++...+.+...||...+||.
T Consensus 68 ~~--~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 108 (144)
T 2hmt_A 68 IR--NFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYY 108 (144)
T ss_dssp GG--GCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHH
T ss_pred CC--CCCEEEECCCCchHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 33 589998665532011223444444445556766666665
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=88.13 E-value=1.6 Score=45.45 Aligned_cols=96 Identities=9% Similarity=0.195 Sum_probs=62.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHh
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAV 401 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v 401 (585)
++..||.|+|.|..|..+|..|.+. | .+++++|+. . +.+ ..++.. .....++.|++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~-----G-------~~V~v~dr~----~---~~~----~~l~~~g~~~~~s~~e~~ 76 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKG-----G-------HECVVYDLN----V---NAV----QALEREGIAGARSIEEFC 76 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSC----H---HHH----HHHHTTTCBCCSSHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhC-----C-------CEEEEEeCC----H---HHH----HHHHHCCCEEeCCHHHHH
Confidence 3567999999999999999988763 6 367888763 1 111 112221 12346788988
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 402 KVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 402 ~~v-kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
+.. +||++|= +...+ -.+++++.+..+. +.-||.-+||-.
T Consensus 77 ~~a~~~DvVi~-~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 77 AKLVKPRVVWL-MVPAA-VVDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp HHSCSSCEEEE-CSCGG-GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred hcCCCCCEEEE-eCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 874 5688773 33333 6788888876653 566888787643
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=88.04 E-value=5.2 Score=40.53 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=79.7
Q ss_pred cCCCeeeccCCCchHH---HHHHHHHHHHHHh-----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 291 GTTHLVFNDDIQGTAS---VVLAGVVAALKLI-----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 291 r~~~~~FnDDiQGTaa---V~lAgll~A~r~~-----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
+..+++.|----.+.+ -+++.+|+..|-. +..|.+.++.|+|.|..|-.+|+.+...
T Consensus 70 ~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~--- 146 (303)
T 1qp8_A 70 PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAAL--- 146 (303)
T ss_dssp CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHT---
T ss_pred hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHC---
Confidence 3467777643222334 4788888877632 2268899999999999999999988653
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 007904 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 426 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~ 426 (585)
|+ +++.+|+..- + . .. ....+|.|+++. .|+++=.- ...++|+++.++.
T Consensus 147 --G~-------~V~~~dr~~~------~---~---~~----~~~~~l~ell~~--aDvV~l~~P~~~~t~~~i~~~~l~~ 199 (303)
T 1qp8_A 147 --GA-------QVRGFSRTPK------E---G---PW----RFTNSLEEALRE--ARAAVCALPLNKHTRGLVKYQHLAL 199 (303)
T ss_dssp --TC-------EEEEECSSCC------C---S---SS----CCBSCSHHHHTT--CSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred --CC-------EEEEECCCcc------c---c---Cc----ccCCCHHHHHhh--CCEEEEeCcCchHHHHHhCHHHHhh
Confidence 64 5888887532 0 0 01 123478888886 89888542 2345788888888
Q ss_pred HHcCCCCcEEEecCC
Q 007904 427 MASFNEKPLILALSN 441 (585)
Q Consensus 427 Ma~~~erPIIFaLSN 441 (585)
|. +..++.=.|.
T Consensus 200 mk---~gailin~sr 211 (303)
T 1qp8_A 200 MA---EDAVFVNVGR 211 (303)
T ss_dssp SC---TTCEEEECSC
T ss_pred CC---CCCEEEECCC
Confidence 75 6678887776
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.03 E-value=1.8 Score=45.50 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 303 GTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 303 GTaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
.+|=-+++-+|+..|- .+..|.+.++.|+|.|..|-.+|+.+.. .|+
T Consensus 133 ~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~-----fG~------- 200 (365)
T 4hy3_A 133 PVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSG-----FRA------- 200 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTT-----SCC-------
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhh-----CCC-------
Confidence 3455567777777662 2346889999999999999999998753 264
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
+++.+|+.. .. + . .....-...+|.|+++. .|+++=. ....++|+++.++.|. +.-|+.
T Consensus 201 ~V~~~d~~~----~~-~---~----~~~~g~~~~~l~ell~~--aDvV~l~~Plt~~T~~li~~~~l~~mk---~gailI 263 (365)
T 4hy3_A 201 RIRVFDPWL----PR-S---M----LEENGVEPASLEDVLTK--SDFIFVVAAVTSENKRFLGAEAFSSMR---RGAAFI 263 (365)
T ss_dssp EEEEECSSS----CH-H---H----HHHTTCEECCHHHHHHS--CSEEEECSCSSCC---CCCHHHHHTSC---TTCEEE
T ss_pred EEEEECCCC----CH-H---H----HhhcCeeeCCHHHHHhc--CCEEEEcCcCCHHHHhhcCHHHHhcCC---CCcEEE
Confidence 588888641 10 0 0 00111112479999986 8998843 2334689999999996 677888
Q ss_pred ecCCCCCcCCCCHHHHhccccCcEEEecCCC-C--CcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007904 438 ALSNPTSQSECTAEEAYTWSKGRAIFASGSP-F--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 514 (585)
Q Consensus 438 aLSNPt~~~E~tpeda~~wt~Grai~AsGSP-f--~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA 514 (585)
=.|.-..--|---.+|+ ..|+.- | |-- | +|..-+ . .-=+..|+.+-|=+|-.... --..|...++
T Consensus 264 N~aRG~~vde~aL~~aL--~~g~i~-a-aLDV~~~EPl~~~-~--pL~~~~nvilTPHia~~t~e-----~~~~~~~~~~ 331 (365)
T 4hy3_A 264 LLSRADVVDFDALMAAV--SSGHIV-A-ASDVYPEEPLPLD-H--PVRSLKGFIRSAHRAGALDS-----AFKKMGDMVL 331 (365)
T ss_dssp ECSCGGGSCHHHHHHHH--HTTSSE-E-EESCCSSSSCCTT-C--GGGTCTTEEECCSCSSCCHH-----HHHHHHHHHH
T ss_pred ECcCCchhCHHHHHHHH--HcCCce-E-EeeCCCCCCCCCC-C--hhhcCCCEEECCccccCHHH-----HHHHHHHHHH
Confidence 77754322222222333 356543 2 210 1 111000 0 01134677777776542221 1234555555
Q ss_pred HHHHcccC
Q 007904 515 EALAKQVT 522 (585)
Q Consensus 515 ~aLA~~v~ 522 (585)
+-|.....
T Consensus 332 ~ni~~~~~ 339 (365)
T 4hy3_A 332 EDMDLMDR 339 (365)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555543
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.95 E-value=2.6 Score=43.24 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=60.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 400 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 400 (585)
..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+.. .. .....+- . ...+|.|+
T Consensus 142 ~~l~g~~vgIIG~G~iG~~vA~~l~~-----~G~-------~V~~~d~~~----~~-----~~~~~~g--~-~~~~l~e~ 197 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAIGKAIARRLIP-----FGV-------KLYYWSRHR----KV-----NVEKELK--A-RYMDIDEL 197 (333)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGG-----GTC-------EEEEECSSC----CH-----HHHHHHT--E-EECCHHHH
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCCc----ch-----hhhhhcC--c-eecCHHHH
Confidence 67999999999999999999998754 263 688888742 10 1001110 0 11378888
Q ss_pred hcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 401 VKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 401 v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++. .|+++=+-. ..++++++.++.|. +. ++.-.|.
T Consensus 198 l~~--aDiVil~vp~~~~t~~~i~~~~~~~mk---~g-ilin~sr 236 (333)
T 2d0i_A 198 LEK--SDIVILALPLTRDTYHIINEERVKKLE---GK-YLVNIGR 236 (333)
T ss_dssp HHH--CSEEEECCCCCTTTTTSBCHHHHHHTB---TC-EEEECSC
T ss_pred Hhh--CCEEEEcCCCChHHHHHhCHHHHhhCC---CC-EEEECCC
Confidence 886 898874322 13578888888885 45 7776663
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.92 E-value=3.9 Score=41.53 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=80.3
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcchHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
..+.+.|----. +|=-+++.+|+..|-. |..+.+.+|.|+|.|..|..+|+.+...
T Consensus 87 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~ 166 (311)
T 2cuk_A 87 RGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAF 166 (311)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHC
Confidence 456666654323 3344688888876532 4568899999999999999999988642
Q ss_pred HHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHH
Q 007904 348 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEV 423 (585)
Q Consensus 348 ~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~ev 423 (585)
|+ +++.+|+.. .. .. + ...+|.|+++. .|+++=.- ...++++++.
T Consensus 167 -----G~-------~V~~~d~~~----~~---~~------~----~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~ 215 (311)
T 2cuk_A 167 -----GM-------RVVYHARTP----KP---LP------Y----PFLSLEELLKE--ADVVSLHTPLTPETHRLLNRER 215 (311)
T ss_dssp -----TC-------EEEEECSSC----CS---SS------S----CBCCHHHHHHH--CSEEEECCCCCTTTTTCBCHHH
T ss_pred -----CC-------EEEEECCCC----cc---cc------c----ccCCHHHHHhh--CCEEEEeCCCChHHHhhcCHHH
Confidence 64 588888742 11 11 1 13578898886 89888652 2246788888
Q ss_pred HHHHHcCCCCcEEEecCCC
Q 007904 424 IEAMASFNEKPLILALSNP 442 (585)
Q Consensus 424 i~~Ma~~~erPIIFaLSNP 442 (585)
++.|. +..++.=.|.-
T Consensus 216 l~~mk---~ga~lin~srg 231 (311)
T 2cuk_A 216 LFAMK---RGAILLNTARG 231 (311)
T ss_dssp HTTSC---TTCEEEECSCG
T ss_pred HhhCC---CCcEEEECCCC
Confidence 88774 67788888873
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=87.79 E-value=0.48 Score=53.18 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=34.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+|++.||+|+|||..|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 323 kL~~arVLIVGaGGLGs~vA~~La~a-----GV------G~ItLvD~D~ 360 (615)
T 4gsl_A 323 IIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNGT 360 (615)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCCB
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCC
Confidence 67889999999999999999999875 87 7999999873
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=87.71 E-value=0.27 Score=50.08 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=62.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhccccCC-CCCHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEP-VNNLLDA 400 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~~~~-~~~L~e~ 400 (585)
.||.|+|||+.|..++-+|+.. |+ ...++|+|.+- ++.+ +|.+ ..+|.++..- ..+ .++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~-----~~-----~~el~L~Di~~----~k~~g~a~dl~~-~~~~~~~~~v~~~~-~~a 64 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL-----GV-----AREVVLVDLDR----KLAQAHAEDILH-ATPFAHPVWVWAGS-YGD 64 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSH----HHHHHHHHHHHT-TGGGSCCCEEEECC-GGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCh----hHHHHHHHHHHH-hHhhcCCeEEEECC-HHH
Confidence 3899999999999988876542 44 25899999851 1110 1211 1122211000 123 567
Q ss_pred hcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++ .|++|=+.+.+ |- .-+++++.|.+++..-+|+-.|||.
T Consensus 65 ~~~--aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 119 (310)
T 2xxj_A 65 LEG--ARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPV 119 (310)
T ss_dssp GTT--EEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred hCC--CCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCch
Confidence 776 89888444433 32 1256778888899999999999998
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=87.69 E-value=0.29 Score=53.06 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=75.3
Q ss_pred cceEEEeCcchH-HHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc-c-c-cCC---CCCH
Q 007904 325 EHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-H-E-HEP---VNNL 397 (585)
Q Consensus 325 d~riv~~GAGsA-g~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa-~-~-~~~---~~~L 397 (585)
..||.|+|||+. +.++|..|+.. ..++. -..++|+|.+- ++.+.+......+. . . ... ..++
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~---~~~l~----~~eV~L~Di~~----e~~~~~~~~~~~~l~~~~~~~~I~~t~D~ 96 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDH---LEEFP----IRKLKLYDNDK----ERQDRIAGACDVFIREKAPDIEFAATTDP 96 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHT---TTTSC----EEEEEEECSCH----HHHHHHHHHHHHHHHHHCTTSEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC---CCCCC----CCEEEEEeCCH----HHHHHHHHHHHHHhccCCCCCEEEEECCH
Confidence 469999999996 55566665431 01441 35799999852 21111111111221 1 1 111 2478
Q ss_pred HHHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 398 LDAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~----------------------------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.+++++ +|++|=+.+.++. .=+++++.|.++|+.-+|+-.|||.
T Consensus 97 ~eal~~--AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPv 174 (472)
T 1u8x_X 97 EEAFTD--VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 174 (472)
T ss_dssp HHHHSS--CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCH
T ss_pred HHHHcC--CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 899987 9998865554321 1358899999999999999999998
Q ss_pred CcCCCCHHHHhccccCcEEEecC
Q 007904 444 SQSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 444 ~~~E~tpeda~~wt~Grai~AsG 466 (585)
. +..+-+++.+.-.-+|.+|
T Consensus 175 d---i~T~~~~k~~p~~rViG~c 194 (472)
T 1u8x_X 175 A---IVAEATRRLRPNSKILNIC 194 (472)
T ss_dssp H---HHHHHHHHHSTTCCEEECC
T ss_pred H---HHHHHHHHhCCCCCEEEeC
Confidence 2 2333444545333466554
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=87.64 E-value=0.78 Score=47.27 Aligned_cols=106 Identities=17% Similarity=0.332 Sum_probs=64.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC---CCHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLD 399 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~---~~L~e 399 (585)
++..||.|+|||..|.++|.+|.. .|+ + .+.++|.+-=..++-..+|.+ ...|....... .+. +
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~-----~~~----~--~v~L~Di~~~~~~g~~~dl~~-~~~~~~~~~~v~~t~d~-~ 71 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGL-----KEL----G--DVVLFDIAEGTPQGKGLDIAE-SSPVDGFDAKFTGANDY-A 71 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHH-----TTC----C--EEEEECSSSSHHHHHHHHHHH-HHHHHTCCCCEEEESSG-G
T ss_pred CcCCEEEEECCCHHHHHHHHHHHh-----CCC----C--eEEEEeCCchhHHHHHHHHhc-hhhhcCCCCEEEEeCCH-H
Confidence 456799999999999999988875 366 2 699999852111000001211 11122111111 344 7
Q ss_pred HhcccCCcEEEeccCC---CCC-----C------CHHHHHHHHcCCCCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGSSGV---GRT-----F------TKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~---~g~-----F------t~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++++ .|++|=+.+. +|. | -+++++.|.++++.-+|+-.|||.
T Consensus 72 a~~~--aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPv 127 (324)
T 3gvi_A 72 AIEG--ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPL 127 (324)
T ss_dssp GGTT--CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred HHCC--CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCc
Confidence 8877 8988744443 332 1 256778888999999999999998
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=0.78 Score=46.46 Aligned_cols=103 Identities=21% Similarity=0.311 Sum_probs=61.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC---CCCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~ 402 (585)
.||.|+|||..|.++|..+.. .|+ . .++++|.+-=-.++...++.+.. .+...... ..++ ++++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~-----~g~----~--~v~L~Di~~~~~~g~~~dl~~~~-~~~~~~~~i~~t~d~-~a~~ 69 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAA-----KEL----G--DIVLLDIVEGVPQGKALDLYEAS-PIEGFDVRVTGTNNY-ADTA 69 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC----S--EEEEECSSSSHHHHHHHHHHTTH-HHHTCCCCEEEESCG-GGGT
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CCC----C--eEEEEeCCccHHHHHHHhHHHhH-hhcCCCeEEEECCCH-HHHC
Confidence 589999999999999998754 364 1 39999975100000000011110 01100111 1456 7777
Q ss_pred ccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+.. .-+++.+.+.++++.-+|+-.|||.
T Consensus 70 ~--aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv 122 (309)
T 1ur5_A 70 N--SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 122 (309)
T ss_dssp T--CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSH
T ss_pred C--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCch
Confidence 6 8998855544421 2247888888899888888889998
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=7.2 Score=41.25 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
..++++|----. +|=-++|.+|+..|- .|..|.+.++.|+|-|..|..+|+.+...
T Consensus 91 ~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA~~l~~~--- 167 (404)
T 1sc6_A 91 RGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL--- 167 (404)
T ss_dssp TTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHT---
T ss_pred CCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHHHHHHHHC---
Confidence 467788765433 444578888888873 25679999999999999999999988653
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 007904 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 426 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~ 426 (585)
|+ +++.+|+..- ..+. -++ ...+|.|+++. .|+++=.- ...++|+++.+..
T Consensus 168 --G~-------~V~~~d~~~~------~~~~-----~~~---~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l~~ 222 (404)
T 1sc6_A 168 --GM-------YVYFYDIENK------LPLG-----NAT---QVQHLSDLLNM--SDVVSLHVPENPSTKNMMGAKEISL 222 (404)
T ss_dssp --TC-------EEEEECSSCC------CCCT-----TCE---ECSCHHHHHHH--CSEEEECCCSSTTTTTCBCHHHHHH
T ss_pred --CC-------EEEEEcCCch------hccC-----Cce---ecCCHHHHHhc--CCEEEEccCCChHHHHHhhHHHHhh
Confidence 75 5888887421 0010 011 23479999987 88887442 2236889999998
Q ss_pred HHcCCCCcEEEecCC
Q 007904 427 MASFNEKPLILALSN 441 (585)
Q Consensus 427 Ma~~~erPIIFaLSN 441 (585)
|. +.-++.=.|.
T Consensus 223 mk---~ga~lIN~aR 234 (404)
T 1sc6_A 223 MK---PGSLLINASR 234 (404)
T ss_dssp SC---TTEEEEECSC
T ss_pred cC---CCeEEEECCC
Confidence 85 6678887775
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.38 E-value=0.58 Score=47.57 Aligned_cols=98 Identities=17% Similarity=0.384 Sum_probs=62.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhccccCCC---CCHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEPV---NNLLD 399 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~~~~~---~~L~e 399 (585)
||.|+|||+.|.++|-.++.. |+ ..++|+|.+ .++.+ ++.+. ..+....... .+. +
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-----~l------~el~L~Di~----~~~~~g~~~dl~~~-~~~~~~~~~i~~t~d~-~ 63 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-----GY------DDLLLIART----PGKPQGEALDLAHA-AAELGVDIRISGSNSY-E 63 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-----TC------SCEEEECSS----TTHHHHHHHHHHHH-HHHHTCCCCEEEESCG-G
T ss_pred CEEEECcCHHHHHHHHHHHhC-----CC------CEEEEEcCC----hhhHHHHHHHHHHh-hhhcCCCeEEEECCCH-H
Confidence 689999999999999777643 55 379999985 22211 01111 1111101111 355 6
Q ss_pred HhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++++ .|++|=+.+.+.. .-+++++.|.++++.-+|+-.|||.
T Consensus 64 a~~~--aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 119 (308)
T 2d4a_B 64 DMRG--SDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV 119 (308)
T ss_dssp GGTT--CSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred HhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 7776 9999866554431 1457888888999888777789998
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=87.32 E-value=0.4 Score=49.24 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=64.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC--CCHHHHh
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAV 401 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~--~~L~e~v 401 (585)
+..||.|+|||..|.++|..|.. .|+ + .+.++|.+-=..++-..+|.+. ..+....... .+-.+++
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~-----~~~----~--~v~l~Di~~~~~~g~a~dL~~~-~~~~~~~~~v~~t~d~~a~ 71 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALI-----KQL----G--DVVLFDIAQGMPNGKALDLLQT-CPIEGVDFKVRGTNDYKDL 71 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----TTC----C--EEEEECSSSSHHHHHHHHHHTT-HHHHTCCCCEEEESCGGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCC----c--eEEEEeCChHHHHHHHHHHHhh-hhhcCCCcEEEEcCCHHHH
Confidence 45799999999999999988765 366 2 6999998521100000012111 1111111111 1224778
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 402 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 402 ~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++ .|++|=+.+.+ |- .-+++++.+.++++.-+|+-.|||.
T Consensus 72 ~~--aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 125 (321)
T 3p7m_A 72 EN--SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPL 125 (321)
T ss_dssp TT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred CC--CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCch
Confidence 76 89887554433 31 1257778888999998999999998
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=87.29 E-value=0.4 Score=49.18 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=64.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC--CCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~--~~L~e~v~~v 404 (585)
||.|+|||..|.++|..|+.. |+ ...+.++|.+-=..++-.-+|.+ -..+....... .+..+++++
T Consensus 2 kv~ViGaG~vG~~~a~~l~~~-----~~-----~~el~l~D~~~~k~~g~a~DL~~-~~~~~~~~~~v~~~~~~~a~~~- 69 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVARQ-----DV-----AKEVVMVDIKDGMPQGKALDMRE-SSPIHGFDTRVTGTNDYGPTED- 69 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC-----SSEEEEECSSTTHHHHHHHHHHH-HHHHHTCCCEEEEESSSGGGTT-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCchHHHHHHHHHHhc-cccccCCCcEEEECCCHHHhCC-
Confidence 799999999999999988764 55 25899999853111100001211 11121111111 245677877
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .-+++++.+.++++.-+|+-.|||.
T Consensus 70 -aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 121 (314)
T 3nep_X 70 -SDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121 (314)
T ss_dssp -CSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSH
T ss_pred -CCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCch
Confidence 89887444333 31 1256778889999999999999998
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.86 Score=45.84 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=59.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC--ch-hchhhcc-ccCCCCCHHHHh
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL--QH-FKKPWAH-EHEPVNNLLDAV 401 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l--~~-~k~~fa~-~~~~~~~L~e~v 401 (585)
.||.|+|+|+-|..+|..|.++ | .+++++|+.-. ..=+...+ +. ....+.- +.....++.++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g-------~~V~~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~ 69 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-----G-------HCVSVVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELE 69 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-----T-------CEEEEECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence 5899999999999999888653 5 47888887531 00000000 00 0000000 000113555554
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
+ .+|++| ++... -.++++++.++.+. +..+|+.+.|--.
T Consensus 70 ~--~~DlVi-lavK~-~~~~~~l~~l~~~l~~~t~Iv~~~nGi~ 109 (320)
T 3i83_A 70 T--KPDCTL-LCIKV-VEGADRVGLLRDAVAPDTGIVLISNGID 109 (320)
T ss_dssp S--CCSEEE-ECCCC-CTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred C--CCCEEE-EecCC-CChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 3 378877 55444 34678999997654 4567888999764
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=87.11 E-value=0.68 Score=47.76 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.||.|+|||..|.|||..++.+ |+ ++.++|.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~-----G~-------~V~l~D~~ 38 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG-----GF-------RVKLYDIE 38 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSC
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 36899999999999999988764 75 57888853
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=87.05 E-value=0.88 Score=48.49 Aligned_cols=124 Identities=12% Similarity=0.171 Sum_probs=74.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHHh
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 401 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~-~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~v 401 (585)
.||.|+|||+. .+..++..+.. ..++ ....|+|+|.+- +|.+.........++.. ....++.+++
T Consensus 3 ~KI~IIGaG~v---~~~~l~~~l~~~~~~l----~~~el~L~Di~~----~~~~~~~~~~~~~~~~~~~v~~t~d~~~al 71 (417)
T 1up7_A 3 MRIAVIGGGSS---YTPELVKGLLDISEDV----RIDEVIFYDIDE----EKQKIVVDFVKRLVKDRFKVLISDTFEGAV 71 (417)
T ss_dssp CEEEEETTTCT---THHHHHHHHHHHTTTS----CCCEEEEECSCH----HHHHHHHHHHHHHHTTSSEEEECSSHHHHH
T ss_pred CEEEEECCCHH---HHHHHHHHHHhcccCC----CcCEEEEEeCCH----HHHHHHHHHHHHHhhCCeEEEEeCCHHHHh
Confidence 58999999994 55555444443 2344 136799999752 22110001111111110 1125788999
Q ss_pred cccCCcEEEeccCCCC---------------CC-------------------CHHHHHHHHcCCCCcEEEecCCCCCcCC
Q 007904 402 KVIKPTILIGSSGVGR---------------TF-------------------TKEVIEAMASFNEKPLILALSNPTSQSE 447 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g---------------~F-------------------t~evi~~Ma~~~erPIIFaLSNPt~~~E 447 (585)
++ +|++|=..++++ ++ =.++++.|.++| .-+|+-.|||. .
T Consensus 72 ~~--AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPv--d- 145 (417)
T 1up7_A 72 VD--AKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPS--G- 145 (417)
T ss_dssp TT--CSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSH--H-
T ss_pred CC--CCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChH--H-
Confidence 87 999997776653 22 358999999999 99999999998 2
Q ss_pred CCHHHHhccccCcEEEecC
Q 007904 448 CTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 448 ~tpeda~~wt~Grai~AsG 466 (585)
+..+-+++.+.-.-+|.+|
T Consensus 146 i~t~a~~k~~p~~rviG~c 164 (417)
T 1up7_A 146 HITEFVRNYLEYEKFIGLC 164 (417)
T ss_dssp HHHHHHHHTTCCSSEEECC
T ss_pred HHHHHHHHhCCCCCEEEeC
Confidence 2233344555332466554
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=86.96 E-value=7.8 Score=39.68 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=83.1
Q ss_pred cCCCeeeccCCCch---HHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 007904 291 GTTHLVFNDDIQGT---ASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 349 (585)
Q Consensus 291 r~~~~~FnDDiQGT---aaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 349 (585)
+..+.+.|----.+ |=-+++.+|+..|. .+..|.+.+|.|+|.|..|..+|+.+...
T Consensus 91 ~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~-- 168 (333)
T 1j4a_A 91 ELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGF-- 168 (333)
T ss_dssp HTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHT--
T ss_pred hCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHHHHHHHHHC--
Confidence 35677777543333 33478888888772 23568899999999999999999988752
Q ss_pred hhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 007904 350 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 425 (585)
Q Consensus 350 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~ 425 (585)
|+ +++.+|+.. . . . . ..++. ...+|.|+++. .|+++=.-. ..++|+++.++
T Consensus 169 ---G~-------~V~~~d~~~----~--~-~--~-~~~~~---~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~l~ 223 (333)
T 1j4a_A 169 ---GA-------KVITYDIFR----N--P-E--L-EKKGY---YVDSLDDLYKQ--ADVISLHVPDVPANVHMINDESIA 223 (333)
T ss_dssp ---TC-------EEEEECSSC----C--H-H--H-HHTTC---BCSCHHHHHHH--CSEEEECSCCCGGGTTCBSHHHHH
T ss_pred ---CC-------EEEEECCCc----c--h-h--H-HhhCe---ecCCHHHHHhh--CCEEEEcCCCcHHHHHHHhHHHHh
Confidence 64 588888742 1 1 0 1 11211 12378899886 898885422 23678899999
Q ss_pred HHHcCCCCcEEEecCCCC
Q 007904 426 AMASFNEKPLILALSNPT 443 (585)
Q Consensus 426 ~Ma~~~erPIIFaLSNPt 443 (585)
.|. +..++.-.|.-.
T Consensus 224 ~mk---~ga~lIn~arg~ 238 (333)
T 1j4a_A 224 KMK---QDVVIVNVSRGP 238 (333)
T ss_dssp HSC---TTEEEEECSCGG
T ss_pred hCC---CCcEEEECCCCc
Confidence 885 667888777643
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=7.4 Score=40.37 Aligned_cols=121 Identities=14% Similarity=0.205 Sum_probs=82.3
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHH----------h----------CCCcccceEEEeCcchHHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKL----------I----------GGTLAEHRFLFLGAGEAGTGIAELIALEI 348 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~----------~----------g~~l~d~riv~~GAGsAg~GIA~ll~~~~ 348 (585)
..|.+.|----. +|=-+++-+|+..|- . |..|.+.+|.|+|.|..|..+|+.+...
T Consensus 92 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~- 170 (343)
T 2yq5_A 92 YNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAM- 170 (343)
T ss_dssp --CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHT-
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHHHHHHHHhhC-
Confidence 367888764333 344568888877761 2 3468899999999999999999988653
Q ss_pred HhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHH
Q 007904 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 424 (585)
Q Consensus 349 ~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi 424 (585)
|+ +++.+|+.. . .... ... ...+|.|+++. .|+++=.-- ..++|+++.+
T Consensus 171 ----G~-------~V~~~d~~~----~--~~~~----~~~----~~~~l~ell~~--aDvV~l~~Plt~~t~~li~~~~l 223 (343)
T 2yq5_A 171 ----GA-------KVIAYDVAY----N--PEFE----PFL----TYTDFDTVLKE--ADIVSLHTPLFPSTENMIGEKQL 223 (343)
T ss_dssp ----TC-------EEEEECSSC----C--GGGT----TTC----EECCHHHHHHH--CSEEEECCCCCTTTTTCBCHHHH
T ss_pred ----CC-------EEEEECCCh----h--hhhh----ccc----cccCHHHHHhc--CCEEEEcCCCCHHHHHHhhHHHH
Confidence 65 688888852 1 0010 011 11379999987 999885432 2478999999
Q ss_pred HHHHcCCCCcEEEecCCCC
Q 007904 425 EAMASFNEKPLILALSNPT 443 (585)
Q Consensus 425 ~~Ma~~~erPIIFaLSNPt 443 (585)
+.|. +..++.=.|.-.
T Consensus 224 ~~mk---~gailIN~aRg~ 239 (343)
T 2yq5_A 224 KEMK---KSAYLINCARGE 239 (343)
T ss_dssp HHSC---TTCEEEECSCGG
T ss_pred hhCC---CCcEEEECCCCh
Confidence 9995 677888777533
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.82 E-value=0.69 Score=44.06 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=57.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEE-EcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL-VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~l-vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
.||.|+|+|..|..+|..|.+. |. ++.+ +|++ .+.+......+-. ....+..|+++.
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~-----g~-------~V~~v~~r~-------~~~~~~l~~~~g~--~~~~~~~~~~~~- 81 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAA-----QI-------PAIIANSRG-------PASLSSVTDRFGA--SVKAVELKDALQ- 81 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHT-----TC-------CEEEECTTC-------GGGGHHHHHHHTT--TEEECCHHHHTT-
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECCC-------HHHHHHHHHHhCC--CcccChHHHHhc-
Confidence 5899999999999999988763 64 3555 6653 1112222222210 111244566665
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+|++| ++..+ ...+++++.++. .+..+|+-++||..
T Consensus 82 -aDvVi-lavp~-~~~~~v~~~l~~-~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 82 -ADVVI-LAVPY-DSIADIVTQVSD-WGGQIVVDASNAID 117 (220)
T ss_dssp -SSEEE-EESCG-GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred -CCEEE-EeCCh-HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence 88877 33333 456778877765 45669999999984
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=86.79 E-value=0.59 Score=41.39 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|+|+|||.||+..|..|.+. |+ ++.++|+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~-----G~-------~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA-----GH-------QVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-----CC-------CEEEEECC
Confidence 499999999999999988763 86 47888864
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=86.79 E-value=0.83 Score=45.76 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|+..+++..|.. .+.+++|+|||.+|-+++..|.+ .|. ++|+++++.
T Consensus 105 ~G~~~~l~~~~~~-~~~~vlvlGaGgaarav~~~L~~-----~G~------~~i~v~nRt 152 (271)
T 1npy_A 105 IAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKN-----SGF------EKLKIYARN 152 (271)
T ss_dssp HHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHH-----TTC------CCEEEECSC
T ss_pred HHHHHHHHHhCCC-CCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4666666666654 56899999999999999888765 375 679998874
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=86.59 E-value=0.5 Score=46.45 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=32.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+-
T Consensus 28 ~l~~~~VlVvG~Gg~G~~va~~La~~-----Gv------~~i~lvD~d~ 65 (249)
T 1jw9_B 28 ALKDSRVLIVGLGGLGCAASQYLASA-----GV------GNLTLLDFDT 65 (249)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCCB
T ss_pred HHhCCeEEEEeeCHHHHHHHHHHHHc-----CC------CeEEEEcCCC
Confidence 46778999999999999999999875 76 7899999973
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=86.55 E-value=0.68 Score=46.06 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 308 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 308 ~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...|++.+++..+.++++.+++|+|||.+|.++|..|.+ .| +++++|++
T Consensus 111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~-----~G--------~V~v~~r~ 159 (287)
T 1nvt_A 111 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAK-----DN--------NIIIANRT 159 (287)
T ss_dssp HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTS-----SS--------EEEEECSS
T ss_pred CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHH-----CC--------CEEEEECC
Confidence 678999999988889999999999998666666655543 13 68888874
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.39 E-value=1.2 Score=44.28 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=57.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC--CCcccCCCccCCchhchhhc--------cccCCCC-
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KGLIVSSRKDSLQHFKKPWA--------HEHEPVN- 395 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~--~GLi~~~r~~~l~~~k~~fa--------~~~~~~~- 395 (585)
||.|+|+|..|..+|..|.+. | .+++++|+ +.- .+...++... .......
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~ 62 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDN-----G-------NEVRIWGTEFDTE-------ILKSISAGREHPRLGVKLNGVEIFWP 62 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C-------CEEEEECCGGGHH-------HHHHHHTTCCBTTTTBCCCSEEEECG
T ss_pred EEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEEccCCHH-------HHHHHHHhCcCcccCccccceEEecH
Confidence 799999999999999988764 5 36888887 311 0111000000 0000112
Q ss_pred -CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 396 -NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 396 -~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++.|+++. +|++|=+ ..+ -..+++++.++...+..+|..++|-.
T Consensus 63 ~~~~~~~~~--~D~vi~~-v~~-~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 63 EQLEKCLEN--AEVVLLG-VST-DGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp GGHHHHHTT--CSEEEEC-SCG-GGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred HhHHHHHhc--CCEEEEc-CCh-HHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 57777765 7877733 323 25788888886633456888888865
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=86.29 E-value=1.7 Score=41.19 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=49.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 400 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 400 (585)
..+...||.|+|+|..|..+|..+.+. | .+++++|+. .. +
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~-----g-------~~V~~~~~~--------~~--------------------~ 54 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIA-----G-------HEVTYYGSK--------DQ--------------------A 54 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECTT--------CC--------------------C
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCC--------HH--------------------H
Confidence 356678999999999999999988653 5 368888763 11 2
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 401 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
++ ++|++|= +.. ....+++++.++...+..+|.-+||+..
T Consensus 55 ~~--~aD~vi~-av~-~~~~~~v~~~l~~~~~~~~vi~~~~g~~ 94 (209)
T 2raf_A 55 TT--LGEIVIM-AVP-YPALAALAKQYATQLKGKIVVDITNPLN 94 (209)
T ss_dssp SS--CCSEEEE-CSC-HHHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred hc--cCCEEEE-cCC-cHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 22 3666552 222 2345677777654333678888999653
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=86.21 E-value=0.59 Score=52.30 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+|+|||..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~a-----GV------G~ItLvD~D 360 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNG 360 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTT-----TC------CEEEEECCS
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 468899999999999999999999874 87 799999986
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.21 E-value=4.5 Score=41.91 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHH--------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeE
Q 007904 304 TASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 363 (585)
Q Consensus 304 TaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i 363 (585)
+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|..+|+.+.. .|+ ++
T Consensus 130 vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~-----~G~-------~V 197 (340)
T 4dgs_A 130 VADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEA-----FGM-------SV 197 (340)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHT-----TTC-------EE
T ss_pred HHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHH-----CCC-------EE
Confidence 455567777777753 2467899999999999999999998864 265 58
Q ss_pred EEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 364 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 364 ~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
+.+|+.. .. . . .+ ....+|.|+++. .|+++=.-- ..++++++.++.|. +.-++.=.
T Consensus 198 ~~~dr~~----~~-~-~-----~~----~~~~sl~ell~~--aDvVil~vP~t~~t~~li~~~~l~~mk---~gailIN~ 257 (340)
T 4dgs_A 198 RYWNRST----LS-G-V-----DW----IAHQSPVDLARD--SDVLAVCVAASAATQNIVDASLLQALG---PEGIVVNV 257 (340)
T ss_dssp EEECSSC----CT-T-S-----CC----EECSSHHHHHHT--CSEEEECC----------CHHHHHHTT---TTCEEEEC
T ss_pred EEEcCCc----cc-c-c-----Cc----eecCCHHHHHhc--CCEEEEeCCCCHHHHHHhhHHHHhcCC---CCCEEEEC
Confidence 8888742 11 0 0 11 113579999987 899884321 23678899999886 66788878
Q ss_pred CCCCCcCCCCHHHHhc
Q 007904 440 SNPTSQSECTAEEAYT 455 (585)
Q Consensus 440 SNPt~~~E~tpeda~~ 455 (585)
|.-..--|-.-.+|++
T Consensus 258 aRG~vvde~aL~~aL~ 273 (340)
T 4dgs_A 258 ARGNVVDEDALIEALK 273 (340)
T ss_dssp SCC-------------
T ss_pred CCCcccCHHHHHHHHH
Confidence 7754333433344443
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.20 E-value=0.55 Score=48.16 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=66.6
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC--cccCCCccCCchhchhhccccCCC--CCHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG--LIVSSRKDSLQHFKKPWAHEHEPV--NNLL 398 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G--Li~~~r~~~l~~~k~~fa~~~~~~--~~L~ 398 (585)
.+..||.|+|||..|.++|..+... |+ ..+.++|.+- =..++...+|.+ ..++......+ .+-.
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~-----g~------~~v~l~D~~~~~~~~~g~a~dl~~-~~~~~~~~~~i~~t~d~ 73 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQK-----EL------ADVVLVDIPQLENPTKGKALDMLE-ASPVQGFDANIIGTSDY 73 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCGGGHHHHHHHHHHHHH-HHHHHTCCCCEEEESCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----CC------CeEEEEeccchHHHHHHhhhhHHH-hhhhccCCCEEEEcCCH
Confidence 3457999999999999999988752 64 3799999851 011111001221 12332211111 1124
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 399 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++++ .|++|=+.+.+ |- .-+++++.++++++.-+|+-.|||.
T Consensus 74 ~a~~~--aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPv 130 (315)
T 3tl2_A 74 ADTAD--SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPV 130 (315)
T ss_dssp GGGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred HHhCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChH
Confidence 66766 89887554433 31 2257888889999999999999998
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=85.75 E-value=7.2 Score=39.96 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=82.2
Q ss_pred CCCeeeccCCCch---HHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQGT---ASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 349 (585)
Q Consensus 292 ~~~~~FnDDiQGT---aaV~lAgll~A~r~-------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 349 (585)
..+.+.|---..+ |=-+++.+|+..|- .+..|.+.++.|+|.|..|..+|+.+...
T Consensus 90 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~-- 167 (333)
T 1dxy_A 90 YGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGF-- 167 (333)
T ss_dssp TTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHT--
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHHHHHHHHC--
Confidence 4677777543333 33468888887651 24578999999999999999999988643
Q ss_pred hhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 007904 350 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 425 (585)
Q Consensus 350 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~ 425 (585)
|+ +++.+|+.. .. . .. .++. ..+|.|+++. .|+++=.-- ..++|+++.++
T Consensus 168 ---G~-------~V~~~d~~~----~~-~-~~----~~~~----~~~l~ell~~--aDvV~~~~P~~~~t~~li~~~~l~ 221 (333)
T 1dxy_A 168 ---GA-------KVIAYDPYP----MK-G-DH----PDFD----YVSLEDLFKQ--SDVIDLHVPGIEQNTHIINEAAFN 221 (333)
T ss_dssp ---TC-------EEEEECSSC----CS-S-CC----TTCE----ECCHHHHHHH--CSEEEECCCCCGGGTTSBCHHHHH
T ss_pred ---CC-------EEEEECCCc----ch-h-hH----hccc----cCCHHHHHhc--CCEEEEcCCCchhHHHHhCHHHHh
Confidence 64 588888752 11 1 11 1111 1378899886 898885421 23689999999
Q ss_pred HHHcCCCCcEEEecCCCC
Q 007904 426 AMASFNEKPLILALSNPT 443 (585)
Q Consensus 426 ~Ma~~~erPIIFaLSNPt 443 (585)
.|. +.-++.=.|.-.
T Consensus 222 ~mk---~ga~lIn~srg~ 236 (333)
T 1dxy_A 222 LMK---PGAIVINTARPN 236 (333)
T ss_dssp HSC---TTEEEEECSCTT
T ss_pred hCC---CCcEEEECCCCc
Confidence 995 567887777643
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=1.2 Score=45.01 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=64.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC--CCcccCCCccCCchhchhhccccCCC----CCHHH
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLD 399 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~--~GLi~~~r~~~l~~~k~~fa~~~~~~----~~L~e 399 (585)
||+|.|| |..|..++..|+. .|+ ...++++|. +-=-..+-..++.+. .++....... .++.+
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~-----~~~-----~~el~L~Di~~~~~~~~~~~~dl~~~-~~~~~~~~~i~~~~d~l~~ 70 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAK-----EPF-----MKDLVLIGREHSINKLEGLREDIYDA-LAGTRSDANIYVESDENLR 70 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-----CTT-----CCEEEEEECGGGHHHHHHHHHHHHHH-HTTSCCCCEEEEEETTCGG
T ss_pred EEEEECCCChhHHHHHHHHHh-----CCC-----CCEEEEEcCCCchhhhHHHHHHHHHh-HHhcCCCeEEEeCCcchHH
Confidence 8999999 9999998887753 254 256999996 210000000002111 1222100011 13678
Q ss_pred HhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++++ .|++|=+.+.+ |- .+++++++|.+++ +.+|+-.|||.
T Consensus 71 al~g--aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv 125 (313)
T 1hye_A 71 IIDE--SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPV 125 (313)
T ss_dssp GGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSH
T ss_pred HhCC--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcH
Confidence 8887 89888666544 21 3668899999999 99999999998
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.37 E-value=1.9 Score=46.76 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=59.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch-hhc-cccCCCCCHHHHhcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWA-HEHEPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~fa-~~~~~~~~L~e~v~~ 403 (585)
.+|.|+|+|..|.++|..|.+. |. +++++|+.- . .+..... ... .......++.|+++.
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~-----G~-------~V~v~dr~~----~---~~~~l~~~~~~~~gi~~~~s~~e~v~~ 71 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH-----GF-------TVCAYNRTQ----S---KVDHFLANEAKGKSIIGATSIEDFISK 71 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSS----H---HHHHHHHTTTTTSSEECCSSHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHHHHHcccccCCCeEEeCCHHHHHhc
Confidence 4799999999999999998763 64 578888641 1 1111111 000 001123578887765
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHcCCC-CcEEEecCCCC
Q 007904 404 I-KPTILIGSSGVGRTFTKEVIEAMASFNE-KPLILALSNPT 443 (585)
Q Consensus 404 v-kptvLIG~S~~~g~Ft~evi~~Ma~~~e-rPIIFaLSNPt 443 (585)
. +||++| ++-+.+...+++++.+..+.+ ..||.-+||-.
T Consensus 72 l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 72 LKRPRKVM-LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp SCSSCEEE-ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCCCEEE-EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 3 477766 444344456777877765543 46777788744
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=85.26 E-value=1.8 Score=44.56 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=107.2
Q ss_pred CCeeeccCCC---chHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcC
Q 007904 293 THLVFNDDIQ---GTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTK 353 (585)
Q Consensus 293 ~~~~FnDDiQ---GTaaV~lAgll~A~r~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G 353 (585)
.|++.|---- .+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|-.+|+.+... |
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G 163 (324)
T 3hg7_A 89 DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHF-----G 163 (324)
T ss_dssp SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHT-----T
T ss_pred CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhC-----C
Confidence 4555553211 2344467777777663 35679999999999999999999998653 6
Q ss_pred CChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHc
Q 007904 354 APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMAS 429 (585)
Q Consensus 354 ls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~ 429 (585)
+ +++.+|+.. .. ... +.. .....+|.|+++. .|+++=.- ..-++|+++.++.|.
T Consensus 164 ~-------~V~~~dr~~----~~---~~~----~~~-~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk- 221 (324)
T 3hg7_A 164 M-------KVLGVSRSG----RE---RAG----FDQ-VYQLPALNKMLAQ--ADVIVSVLPATRETHHLFTASRFEHCK- 221 (324)
T ss_dssp C-------EEEEECSSC----CC---CTT----CSE-EECGGGHHHHHHT--CSEEEECCCCCSSSTTSBCTTTTTCSC-
T ss_pred C-------EEEEEcCCh----HH---hhh----hhc-ccccCCHHHHHhh--CCEEEEeCCCCHHHHHHhHHHHHhcCC-
Confidence 5 688888864 11 111 110 1123578898886 88887432 224678888888775
Q ss_pred CCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEe-----cCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcc
Q 007904 430 FNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA-----SGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIR 504 (585)
Q Consensus 430 ~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~A-----sGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~ 504 (585)
+..|+.=.|.-..--|---.+|+ .+|+.-.| ..-|.++- ..-=+..|+.+-|=++- .+
T Consensus 222 --~gailIN~aRG~~vde~aL~~aL--~~g~i~ga~lDV~~~EPl~~~------~pL~~~~nvilTPHia~------~t- 284 (324)
T 3hg7_A 222 --PGAILFNVGRGNAINEGDLLTAL--RTGKLGMAVLDVFEQEPLPAD------SPLWGQPNLIITPHNSA------YS- 284 (324)
T ss_dssp --TTCEEEECSCGGGBCHHHHHHHH--HTTSSSEEEESCCSSSSCCTT------CTTTTCTTEEECCSCSS------CC-
T ss_pred --CCcEEEECCCchhhCHHHHHHHH--HcCCceEEEeccCCCCCCCCC------ChhhcCCCEEEeCCCcc------cc-
Confidence 66788877753322222222333 23442111 11122110 00113457888887653 22
Q ss_pred cCHHHHHHHHHHHHcccC
Q 007904 505 VHDDMLLAASEALAKQVT 522 (585)
Q Consensus 505 Itd~m~~aAA~aLA~~v~ 522 (585)
....|...+++-|.....
T Consensus 285 ~~~~~~~~~~~nl~~~~~ 302 (324)
T 3hg7_A 285 FPDDVAQIFVRNYIRFID 302 (324)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 225677777777766654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=0.52 Score=48.62 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=65.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC-CCCHHHHhcc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP-VNNLLDAVKV 403 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~-~~~L~e~v~~ 403 (585)
-.||.|+|||..|..+|..|... |+ ...+.++|.+-=..++-.-+|.+. .+|....-. ..+-.+++++
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~-----~~-----~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~a~~~ 73 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQ-----GI-----TDELVVIDVNKEKAMGDVMDLNHG-KAFAPQPVKTSYGTYEDCKD 73 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHHT-GGGSSSCCEEEEECGGGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CceEEEEecchHHHHHHHHHHHhc-cccccCCeEEEeCcHHHhCC
Confidence 36899999999999999988763 65 258999997410000000012221 233211000 1122466766
Q ss_pred cCCcEEEeccCC---CCC-----C------CHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGV---GRT-----F------TKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~---~g~-----F------t~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+. +|- | -+++++.+.++++.-+|+-.|||.
T Consensus 74 --aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPv 125 (326)
T 3pqe_A 74 --ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPV 125 (326)
T ss_dssp --CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred --CCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChH
Confidence 8887744433 331 1 267788889999999999999998
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=84.70 E-value=6.6 Score=40.45 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=63.6
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
|..|.+.+|.|+|.|..|..+|+.+..+ .|+ +++.+|+..- . ....+ .+ ......+|.|
T Consensus 158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~----~G~-------~V~~~d~~~~----~---~~~~~-~~--g~~~~~~l~e 216 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGAIQKEIARKAVHG----LGM-------KLVYYDVAPA----D---AETEK-AL--GAERVDSLEE 216 (348)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHT----TCC-------EEEEECSSCC----C---HHHHH-HH--TCEECSSHHH
T ss_pred CcCCCCCEEEEEEECHHHHHHHHHHHHh----cCC-------EEEEECCCCc----c---hhhHh-hc--CcEEeCCHHH
Confidence 5678999999999999999999988622 264 6888887421 1 11111 01 0011247888
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 400 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 400 ~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
+++. .|+++=.-. ..++++++.++.|. +..||.-.|.-
T Consensus 217 ll~~--aDvVil~vp~~~~t~~li~~~~l~~mk---~gailin~srg 258 (348)
T 2w2k_A 217 LARR--SDCVSVSVPYMKLTHHLIDEAFFAAMK---PGSRIVNTARG 258 (348)
T ss_dssp HHHH--CSEEEECCCCSGGGTTCBCHHHHHHSC---TTEEEEECSCG
T ss_pred Hhcc--CCEEEEeCCCChHHHHHhhHHHHhcCC---CCCEEEECCCC
Confidence 8886 898884421 23688888998884 56677766653
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=84.59 E-value=4.8 Score=40.98 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcchHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
..+.+.|----. +|=-+++.+|+..|. .+..|.+.+|.|+|.|..|-.+|+.+...
T Consensus 89 ~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~ 168 (320)
T 1gdh_A 89 RGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGF 168 (320)
T ss_dssp TTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTT
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHC
Confidence 355666643322 344467888887663 23568899999999999999999988642
Q ss_pred HHhhcCCChhhhcCeEEEEcC-CCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHH
Q 007904 348 ISKQTKAPVEETRKKICLVDS-KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKE 422 (585)
Q Consensus 348 ~~~~~Gls~eeA~~~i~lvD~-~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~e 422 (585)
|+ +++.+|+ .. . . ...+ .+ ......+|.|+++. .|+++=.-- ..++++++
T Consensus 169 -----G~-------~V~~~d~~~~----~--~--~~~~-~~--g~~~~~~l~ell~~--aDvVil~~p~~~~t~~~i~~~ 223 (320)
T 1gdh_A 169 -----DM-------DIDYFDTHRA----S--S--SDEA-SY--QATFHDSLDSLLSV--SQFFSLNAPSTPETRYFFNKA 223 (320)
T ss_dssp -----TC-------EEEEECSSCC----C--H--HHHH-HH--TCEECSSHHHHHHH--CSEEEECCCCCTTTTTCBSHH
T ss_pred -----CC-------EEEEECCCCc----C--h--hhhh-hc--CcEEcCCHHHHHhh--CCEEEEeccCchHHHhhcCHH
Confidence 63 6888887 41 1 0 0000 01 00112378898886 888874421 23578888
Q ss_pred HHHHHHcCCCCcEEEecCC
Q 007904 423 VIEAMASFNEKPLILALSN 441 (585)
Q Consensus 423 vi~~Ma~~~erPIIFaLSN 441 (585)
.++.|. +.-+|.-.|.
T Consensus 224 ~l~~mk---~gailIn~ar 239 (320)
T 1gdh_A 224 TIKSLP---QGAIVVNTAR 239 (320)
T ss_dssp HHTTSC---TTEEEEECSC
T ss_pred HHhhCC---CCcEEEECCC
Confidence 888775 5667777776
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=84.44 E-value=6.4 Score=39.86 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHh----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEc
Q 007904 304 TASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 367 (585)
Q Consensus 304 TaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD 367 (585)
+|=-+++-+|+..|-. ...|.+.+|.|+|.|..|..+|+.+... |+ +++.+|
T Consensus 85 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~~d 152 (290)
T 3gvx_A 85 VAEHAFALLLAHAKNILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAF-----GM-------RVIAYT 152 (290)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEEC
T ss_pred HHHHHHHHHHHHHHhhhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhh-----Cc-------EEEEEe
Confidence 4445677777766531 1458899999999999999999998754 65 688888
Q ss_pred CCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 368 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 368 ~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+.. .. ... +. ...+|.|+++. .|+++=.- ...++|+++.++.|. +..+|.=.|.-.
T Consensus 153 r~~----~~---~~~-----~~---~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~l~~mk---~gailIN~aRG~ 212 (290)
T 3gvx_A 153 RSS----VD---QNV-----DV---ISESPADLFRQ--SDFVLIAIPLTDKTRGMVNSRLLANAR---KNLTIVNVARAD 212 (290)
T ss_dssp SSC----CC---TTC-----SE---ECSSHHHHHHH--CSEEEECCCCCTTTTTCBSHHHHTTCC---TTCEEEECSCGG
T ss_pred ccc----cc---ccc-----cc---ccCChHHHhhc--cCeEEEEeeccccchhhhhHHHHhhhh---cCceEEEeehhc
Confidence 752 11 111 11 23579999987 88887432 224678899988885 677888777533
Q ss_pred CcCCCCHHHHhccccCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007904 444 SQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 444 ~~~E~tpeda~~wt~Grai~AsGSPf--~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
.--|---.+|++ +|+.-.|.=--| +|. ..-=+..|+.+-|=++=| ....-.+.|...+++-|....
T Consensus 213 ~vd~~aL~~aL~--~g~i~ga~lDV~~~EP~------~pL~~~~nvilTPHiag~----~t~e~~~~~~~~~~~ni~~~~ 280 (290)
T 3gvx_A 213 VVSKPDMIGFLK--ERSDVWYLSDVWWNEPE------ITETNLRNAILSPHVAGG----MSGEIMDIAIQLAFENVRNFF 280 (290)
T ss_dssp GBCHHHHHHHHH--HCTTCEEEESCCTTTTS------CCSCCCSSEEECCSCSSC----BTTBCCHHHHHHHHHHHHHHT
T ss_pred ccCCcchhhhhh--hccceEEeeccccCCcc------cchhhhhhhhcCccccCC----ccchHHHHHHHHHHHHHHhhh
Confidence 212222223332 343322211111 111 112245688888876511 223445677777777777765
Q ss_pred Cc
Q 007904 522 TE 523 (585)
Q Consensus 522 ~~ 523 (585)
.-
T Consensus 281 ~~ 282 (290)
T 3gvx_A 281 EG 282 (290)
T ss_dssp C-
T ss_pred cC
Confidence 43
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.41 E-value=4.6 Score=41.62 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=79.4
Q ss_pred CCeeeccCCC---chHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhh
Q 007904 293 THLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351 (585)
Q Consensus 293 ~~~~FnDDiQ---GTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~ 351 (585)
.+++.|---- .+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|..+|+.+..
T Consensus 112 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~----- 186 (335)
T 2g76_A 112 GILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQS----- 186 (335)
T ss_dssp TCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHHHHHT-----
T ss_pred CeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHHHHHH-----
Confidence 5666665322 2344467888887764 2567999999999999999999998864
Q ss_pred cCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 007904 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 426 (585)
Q Consensus 352 ~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~ 426 (585)
.|+ +++.+|+.. . .. .+.. .-...+|.|+++. .|+++=+- ...++|+++.++.
T Consensus 187 ~G~-------~V~~~d~~~----~------~~---~~~~~g~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l~~ 244 (335)
T 2g76_A 187 FGM-------KTIGYDPII----S------PE---VSASFGVQQLPLEEIWPL--CDFITVHTPLLPSTTGLLNDNTFAQ 244 (335)
T ss_dssp TTC-------EEEEECSSS----C------HH---HHHHTTCEECCHHHHGGG--CSEEEECCCCCTTTTTSBCHHHHTT
T ss_pred CCC-------EEEEECCCc----c------hh---hhhhcCceeCCHHHHHhc--CCEEEEecCCCHHHHHhhCHHHHhh
Confidence 263 588888641 1 10 1111 0012479899886 89988542 1235788888888
Q ss_pred HHcCCCCcEEEecCC
Q 007904 427 MASFNEKPLILALSN 441 (585)
Q Consensus 427 Ma~~~erPIIFaLSN 441 (585)
|. +..++.=.|.
T Consensus 245 mk---~gailIN~ar 256 (335)
T 2g76_A 245 CK---KGVRVVNCAR 256 (335)
T ss_dssp SC---TTEEEEECSC
T ss_pred CC---CCcEEEECCC
Confidence 85 6678887776
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.20 E-value=1.9 Score=44.71 Aligned_cols=100 Identities=23% Similarity=0.193 Sum_probs=58.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh--chhhccc---cC---CCCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHE---HE---PVNN 396 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~--k~~fa~~---~~---~~~~ 396 (585)
..||.|+|+|+-|..+|..|.+. | .+++++|++--.. +.+... ...|... .+ ...+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~-----G-------~~V~l~~r~~~~~----~~i~~~~~~~~~l~g~~l~~~i~~t~d 92 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK-----G-------QKVRLWSYESDHV----DEMQAEGVNNRYLPNYPFPETLKAYCD 92 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT-----T-------CCEEEECSCHHHH----HHHHHHSSBTTTBTTCCCCTTEEEESC
T ss_pred CCeEEEECccHHHHHHHHHHHHC-----C-------CeEEEEeCCHHHH----HHHHHcCCCcccCCCCccCCCeEEECC
Confidence 36899999999999999988753 5 3577888741100 001000 0001000 00 1246
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 397 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
+.|+++. +|++| ++.+. -+.+++++.++.+. +..+|..++|-..
T Consensus 93 ~~ea~~~--aDvVi-laVp~-~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 93 LKASLEG--VTDIL-IVVPS-FAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp HHHHHTT--CCEEE-ECCCH-HHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred HHHHHhc--CCEEE-ECCCH-HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7788875 77766 33322 36777888777654 3557777787553
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=84.17 E-value=4.4 Score=42.90 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHH--------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeE
Q 007904 304 TASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 363 (585)
Q Consensus 304 TaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i 363 (585)
+|=-+++-+|+..|- .+..|.+.++.|+|.|..|..+|+.+... |+ ++
T Consensus 150 VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~-----G~-------~V 217 (393)
T 2nac_A 150 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPF-----DV-------HL 217 (393)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGG-----TC-------EE
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhC-----CC-------EE
Confidence 344467777777652 25679999999999999999999988642 64 58
Q ss_pred EEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 364 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 364 ~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
+.+|+... . . .....+ ......+|.|+++. .|+++=.- ...++|+++.++.|. +.-+|.=.
T Consensus 218 ~~~d~~~~----~---~-~~~~~~--G~~~~~~l~ell~~--aDvV~l~~Plt~~t~~li~~~~l~~mk---~gailIN~ 282 (393)
T 2nac_A 218 HYTDRHRL----P---E-SVEKEL--NLTWHATREDMYPV--CDVVTLNCPLHPETEHMINDETLKLFK---RGAYIVNT 282 (393)
T ss_dssp EEECSSCC----C---H-HHHHHH--TCEECSSHHHHGGG--CSEEEECSCCCTTTTTCBSHHHHTTSC---TTEEEEEC
T ss_pred EEEcCCcc----c---h-hhHhhc--CceecCCHHHHHhc--CCEEEEecCCchHHHHHhhHHHHhhCC---CCCEEEEC
Confidence 88886421 0 1 000011 00112478898886 89888542 224688999988885 56788877
Q ss_pred CC
Q 007904 440 SN 441 (585)
Q Consensus 440 SN 441 (585)
|.
T Consensus 283 aR 284 (393)
T 2nac_A 283 AR 284 (393)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=83.88 E-value=1.6 Score=42.09 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=56.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc---hhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---KPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k---~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|+|+|..|..+|..|.+. | .+++++|+.- .+.+.+.... ..+ .......+ .++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g-------~~V~~~~r~~----~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~ 63 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQ-----G-------HEVQGWLRVP----QPYCSVNLVETDGSIF-NESLTAND-PDFLAT 63 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSC----CSEEEEEEECTTSCEE-EEEEEESC-HHHHHT
T ss_pred eEEEECcCHHHHHHHHHHHhC-----C-------CCEEEEEcCc----cceeeEEEEcCCCcee-eeeeeecC-ccccCC
Confidence 799999999999999988753 5 3688888752 1111111100 000 00001122 466664
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
+|++|=+ ..+. -.+++++.++.+. +..+|..++|..
T Consensus 64 --~d~vi~~-v~~~-~~~~v~~~l~~~l~~~~~vv~~~~g~ 100 (291)
T 1ks9_A 64 --SDLLLVT-LKAW-QVSDAVKSLASTLPVTTPILLIHNGM 100 (291)
T ss_dssp --CSEEEEC-SCGG-GHHHHHHHHHTTSCTTSCEEEECSSS
T ss_pred --CCEEEEE-ecHH-hHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 8888743 3332 3689999887654 356777788865
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=83.81 E-value=2.9 Score=37.66 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=54.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~ 403 (585)
.+|+|.|| |-.|-.+++.|++ .| .++++++++.- ....+......+.. +.....++.++++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~-----~g-------~~V~~~~r~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 67 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQ-----AG-------YEVTVLVRDSS----RLPSEGPRPAHVVVGDVLQAADVDKTVAG 67 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH-----TT-------CEEEEEESCGG----GSCSSSCCCSEEEESCTTSHHHHHHHHTT
T ss_pred CEEEEEcCCcHHHHHHHHHHHH-----CC-------CeEEEEEeChh----hcccccCCceEEEEecCCCHHHHHHHHcC
Confidence 68999998 7777777777764 25 36888887521 10111011111111 11222357777875
Q ss_pred cCCcEEEeccCCCCC---------CCHHHHHHHHcCCCCcEEEecC
Q 007904 404 IKPTILIGSSGVGRT---------FTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 404 vkptvLIG~S~~~g~---------Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+|++|=+.+.... .+..+++.|.+..-+.|||.=|
T Consensus 68 --~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss 111 (206)
T 1hdo_A 68 --QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (206)
T ss_dssp --CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred --CCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 8999988765431 1456666666544445555433
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=83.79 E-value=1 Score=44.79 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT-----GH-------TVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5899999999999999998763 63 68899874
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=83.78 E-value=1.8 Score=42.41 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=58.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
-.||.|+|+|..|..+|..|... |. ..+++++|++. +.+...+..-.. .....++.|+++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~-----g~-----~~~V~~~d~~~-------~~~~~~~~~g~~-~~~~~~~~~~~~~- 66 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD-----HP-----HYKIVGYNRSD-------RSRDIALERGIV-DEATADFKVFAAL- 66 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSSH-------HHHHHHHHTTSC-SEEESCTTTTGGG-
T ss_pred cceEEEEeeCHHHHHHHHHHHhC-----CC-----CcEEEEEcCCH-------HHHHHHHHcCCc-ccccCCHHHhhcC-
Confidence 36899999999999999988753 42 14688888741 111111110000 0012356677765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC--CCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASF--NEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~--~erPIIFaLSNPt 443 (585)
+|++| ++.++... +++++.+..+ .+..||.-+||-.
T Consensus 67 -aDvVi-lavp~~~~-~~v~~~l~~~~l~~~~ivi~~~~~~ 104 (290)
T 3b1f_A 67 -ADVII-LAVPIKKT-IDFIKILADLDLKEDVIITDAGSTK 104 (290)
T ss_dssp -CSEEE-ECSCHHHH-HHHHHHHHTSCCCTTCEEECCCSCH
T ss_pred -CCEEE-EcCCHHHH-HHHHHHHHhcCCCCCCEEEECCCCc
Confidence 88877 44444333 8888888765 4566777677643
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=83.23 E-value=2.1 Score=43.75 Aligned_cols=191 Identities=13% Similarity=0.081 Sum_probs=108.5
Q ss_pred CCCeeeccCC----CchHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhh
Q 007904 292 TTHLVFNDDI----QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351 (585)
Q Consensus 292 ~~~~~FnDDi----QGTaaV~lAgll~A~r~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~ 351 (585)
..+++.|--- +..|=-+++.+|+..|- .+..|.+.+|.|+|.|..|..+|+.+...
T Consensus 86 ~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~---- 161 (315)
T 3pp8_A 86 ASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAW---- 161 (315)
T ss_dssp TTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTT----
T ss_pred CCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHC----
Confidence 4566665321 33455678888888764 25678999999999999999999988643
Q ss_pred cCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHH
Q 007904 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 427 (585)
Q Consensus 352 ~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~M 427 (585)
|+ +++.+|+..- ...... .+ ....+|.|+++. .|+++=.- ..-++|+++.++.|
T Consensus 162 -G~-------~V~~~dr~~~-------~~~~~~-~~----~~~~~l~ell~~--aDiV~l~~Plt~~t~~li~~~~l~~m 219 (315)
T 3pp8_A 162 -GF-------PLRCWSRSRK-------SWPGVE-SY----VGREELRAFLNQ--TRVLINLLPNTAQTVGIINSELLDQL 219 (315)
T ss_dssp -TC-------CEEEEESSCC-------CCTTCE-EE----ESHHHHHHHHHT--CSEEEECCCCCGGGTTCBSHHHHTTS
T ss_pred -CC-------EEEEEcCCch-------hhhhhh-hh----cccCCHHHHHhh--CCEEEEecCCchhhhhhccHHHHhhC
Confidence 65 5788887421 111110 11 011468888886 89887431 22468899998888
Q ss_pred HcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCccee-CCeeeCcCCCcccccchhhhHHHHHhCCcccC
Q 007904 428 ASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 506 (585)
Q Consensus 428 a~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~-~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~It 506 (585)
. +..|+.=.|+-..--|---.+|+ ..|+.-.|.=-=|++--. .+. .-=+..|+.+-|=++- .+. .
T Consensus 220 k---~gailIN~aRG~~vd~~aL~~aL--~~g~i~gA~lDV~~~EPl~~~~--pL~~~~nvilTPHia~------~t~-~ 285 (315)
T 3pp8_A 220 P---DGAYVLNLARGVHVQEADLLAAL--DSGKLKGAMLDVFSQEPLPQES--PLWRHPRVAMTPHIAA------VTR-P 285 (315)
T ss_dssp C---TTEEEEECSCGGGBCHHHHHHHH--HHTSEEEEEESCCSSSSCCTTC--GGGGCTTEEECSSCSS------CCC-H
T ss_pred C---CCCEEEECCCChhhhHHHHHHHH--HhCCccEEEcCCCCCCCCCCCC--hhhcCCCEEECCCCCc------ccH-H
Confidence 5 66788877764422222223333 345543322111110000 000 0113457778787662 221 2
Q ss_pred HHHHHHHHHHHHcccC
Q 007904 507 DDMLLAASEALAKQVT 522 (585)
Q Consensus 507 d~m~~aAA~aLA~~v~ 522 (585)
+.|...+++-|.....
T Consensus 286 ~~~~~~~~~ni~~~~~ 301 (315)
T 3pp8_A 286 AEAIDYISRTITQLEK 301 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4666666666666543
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=83.20 E-value=0.85 Score=46.09 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=65.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc---ccCCCccCCchhchhhccccCCCCCHHHHh
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL---IVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 401 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL---i~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 401 (585)
.||+|.|| |..|.-++..|+. .|.-...-...++++|...- ...... ++.+...+|..+-....++.+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~-----~g~~~~~~~~ev~l~D~~~~~~~~~g~~~-dl~~~~~~~~~di~~~~~~~~a~ 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAA-----GEMLGKDQPVILQLLEIPQAMKALEGVVM-ELEDCAFPLLAGLEATDDPKVAF 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHT-----TTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHh-----CCCCCCCCCCEEEEEeCCCchhhccchhh-hhhcccccccCCeEeccChHHHh
Confidence 48999997 9999998887754 25310000137999997420 000000 11111112322211224688888
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 402 KVIKPTILIGSSGVGRT--------------FTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
++ +|++|=+.+.+.. .|.++++++.+++ ...+++-.|||.
T Consensus 79 ~~--~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~ 133 (327)
T 1y7t_A 79 KD--ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPA 133 (327)
T ss_dssp TT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred CC--CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Confidence 75 9999977665531 3566788888886 666888899996
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=82.88 E-value=3.1 Score=42.10 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=54.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc----CCCCCHHH-H
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLD-A 400 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~----~~~~~L~e-~ 400 (585)
.||.|+|+|..|..+|..|... |. ..+++++|++- +.+. .+... ....++.| +
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~-----G~-----~~~V~~~dr~~-------~~~~-----~a~~~G~~~~~~~~~~~~~ 91 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS-----GF-----KGKIYGYDINP-------ESIS-----KAVDLGIIDEGTTSIAKVE 91 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT-----TC-----CSEEEEECSCH-------HHHH-----HHHHTTSCSEEESCTTGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC-----CC-----CCEEEEEECCH-------HHHH-----HHHHCCCcchhcCCHHHHh
Confidence 7999999999999999988763 65 24789888741 1111 11110 01245666 6
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecC
Q 007904 401 VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALS 440 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLS 440 (585)
++. +|++| ++.++. -.+++++.+..+ .+.-||.-.+
T Consensus 92 ~~~--aDvVi-lavp~~-~~~~vl~~l~~~l~~~~iv~d~~ 128 (314)
T 3ggo_A 92 DFS--PDFVM-LSSPVR-TFREIAKKLSYILSEDATVTDQG 128 (314)
T ss_dssp GGC--CSEEE-ECSCGG-GHHHHHHHHHHHSCTTCEEEECC
T ss_pred hcc--CCEEE-EeCCHH-HHHHHHHHHhhccCCCcEEEECC
Confidence 665 77777 444443 356777777653 3455665444
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.70 E-value=1.9 Score=46.33 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=59.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc-----cccCCCCCHHHHh
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-----HEHEPVNNLLDAV 401 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa-----~~~~~~~~L~e~v 401 (585)
||.|+|+|..|..+|..|.+. |. +++++|+.. .+ +......+- .......++.|++
T Consensus 3 kIgVIG~G~mG~~lA~~La~~-----G~-------~V~v~dr~~----~~---~~~l~~~~g~~~~~~~i~~~~~~~e~v 63 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEK-----GF-------KVAVFNRTY----SK---SEEFMKANASAPFAGNLKAFETMEAFA 63 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSH----HH---HHHHHHHTTTSTTGGGEEECSCHHHHH
T ss_pred EEEEEChHHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---HHHHHHhcCCCCCCCCeEEECCHHHHH
Confidence 799999999999999988753 63 588888741 11 111111100 0011235788888
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 402 KVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 402 ~~v-kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
+.. ++|++| ++.+.+...+++++.+..+. +.-||.-+||-.
T Consensus 64 ~~l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 64 ASLKKPRKAL-ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp HHBCSSCEEE-ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred hcccCCCEEE-EecCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 753 488877 44434334677887776543 456788888865
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=1 Score=46.69 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++|++.+|+|+|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 32 ~~L~~~~VlivG~GGlG~~ia~~La~~-----Gv------g~itlvD~d 69 (346)
T 1y8q_A 32 KRLRASRVLLVGLKGLGAEIAKNLILA-----GV------KGLTMLDHE 69 (346)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECC
Confidence 367789999999999999999999876 87 899999976
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=82.53 E-value=5.2 Score=41.60 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=110.8
Q ss_pred CCeeeccC-C-CchHHHHHHHHHHHHHH----------------------------hCCCcccceEEEeCcchHHHHHHH
Q 007904 293 THLVFNDD-I-QGTASVVLAGVVAALKL----------------------------IGGTLAEHRFLFLGAGEAGTGIAE 342 (585)
Q Consensus 293 ~~~~FnDD-i-QGTaaV~lAgll~A~r~----------------------------~g~~l~d~riv~~GAGsAg~GIA~ 342 (585)
.|++.|.- . ..+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|-.+|+
T Consensus 98 gI~V~n~pg~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~ 177 (352)
T 3gg9_A 98 GVVVLEGKGSPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177 (352)
T ss_dssp TCEEECCCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHH
Confidence 56666622 2 23444567777777663 256789999999999999999999
Q ss_pred HHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCC
Q 007904 343 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRT 418 (585)
Q Consensus 343 ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~ 418 (585)
.+... |+ +++.+|+.. .. + .... .......+|.|+++. .|+++=.- ...++
T Consensus 178 ~l~~~-----G~-------~V~~~d~~~----~~-~---~~~~---~g~~~~~~l~ell~~--aDiV~l~~Plt~~t~~l 232 (352)
T 3gg9_A 178 YGRAF-----GM-------NVLVWGREN----SK-E---RARA---DGFAVAESKDALFEQ--SDVLSVHLRLNDETRSI 232 (352)
T ss_dssp HHHHT-----TC-------EEEEECSHH----HH-H---HHHH---TTCEECSSHHHHHHH--CSEEEECCCCSTTTTTC
T ss_pred HHHhC-----CC-------EEEEECCCC----CH-H---HHHh---cCceEeCCHHHHHhh--CCEEEEeccCcHHHHHh
Confidence 88653 65 688888741 00 0 0000 001123589999987 89888432 23468
Q ss_pred CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEE------EecCCCCCcceeCCeeeCcCCCcccccchh
Q 007904 419 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAI------FASGSPFDPFEYNGKVFVPGQANNAYIFPG 492 (585)
Q Consensus 419 Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai------~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPG 492 (585)
|+++.++.|. +..++.=.|+-..--|---.+|++ +|+.- |.. -|.++ . ..-=+..|+.+-|=
T Consensus 233 i~~~~l~~mk---~gailIN~aRg~~vd~~aL~~aL~--~g~i~gA~lDV~~~-EPl~~----~--~pL~~~~nvilTPH 300 (352)
T 3gg9_A 233 ITVADLTRMK---PTALFVNTSRAELVEENGMVTALN--RGRPGMAAIDVFET-EPILQ----G--HTLLRMENCICTPH 300 (352)
T ss_dssp BCHHHHTTSC---TTCEEEECSCGGGBCTTHHHHHHH--HTSSSEEEECCCSS-SCCCS----C--CGGGGCTTEEECCS
T ss_pred hCHHHHhhCC---CCcEEEECCCchhhcHHHHHHHHH--hCCccEEEecccCC-CCCCC----C--ChhhcCCCEEECCC
Confidence 9999999885 677888888744334444445554 34431 221 12211 0 01123468888887
Q ss_pred hhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007904 493 FGLGLVISGAIRVHDDMLLAASEALAKQVT 522 (585)
Q Consensus 493 iglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 522 (585)
+|-.. ..--+.|...+++-|.....
T Consensus 301 ia~~t-----~e~~~~~~~~~~~ni~~~~~ 325 (352)
T 3gg9_A 301 IGYVE-----RESYEMYFGIAFQNILDILQ 325 (352)
T ss_dssp CTTCB-----HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC-----HHHHHHHHHHHHHHHHHHHc
Confidence 74211 11124566666666666553
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=82.38 E-value=0.66 Score=45.30 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=56.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc------ccCCCCCHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH------EHEPVNNLLD 399 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~------~~~~~~~L~e 399 (585)
.||.|+|+|..|..+|..|.+. | .+++++|++.= +.+.+......... ......+..|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~-----g-------~~V~~~~r~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 67 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG-----G-------NDVTLIDQWPA----HIEAIRKNGLIADFNGEEVVANLPIFSPEE 67 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSCHH----HHHHHHHHCEEEEETTEEEEECCCEECGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhC-----C-------CcEEEEECCHH----HHHHHHhCCEEEEeCCCeeEecceeecchh
Confidence 4899999999999999888653 5 36888887421 00001100000000 0000112223
Q ss_pred Hhccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 400 AVKVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 400 ~v~~v-kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
+.+.+ ++|++|= +..+. ..+++++.++.+. +..+|..++|...
T Consensus 68 ~~~~~~~~d~vi~-~v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~ 112 (316)
T 2ew2_A 68 IDHQNEQVDLIIA-LTKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG 112 (316)
T ss_dssp CCTTSCCCSEEEE-CSCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred hcccCCCCCEEEE-Eeccc-cHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 33211 4787773 33232 4688888887654 4678888998663
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=82.00 E-value=2.7 Score=42.27 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=63.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC-CccCCchhc--hhhccc---cCC---CC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFK--KPWAHE---HEP---VN 395 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~~l~~~k--~~fa~~---~~~---~~ 395 (585)
..||.|+|+|..|..+|..|.+. |........+++++|+..-.... +.+.+.... ..|-.. ... ..
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~-----g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGN-----AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-----HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-----CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 36899999999999999999875 31000001468888875321100 000011000 001000 001 14
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 396 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
++.|+++. +|++| ++..+ -..+++++.++.+. +..+|..++|-..
T Consensus 83 ~~~~~~~~--aD~Vi-lav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 83 DVVQAAED--ADILI-FVVPH-QFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp SHHHHHTT--CSEEE-ECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred CHHHHHcC--CCEEE-EeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 67888875 88777 33333 46789999887654 4668889999554
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=81.86 E-value=1.8 Score=44.01 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=64.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC--CCCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~--~~~L~e~v~~v 404 (585)
||.|+|||..|..+|-+|... |+ ...+.|+|..-=...+-.-+|.+ -..|...... ..+-.+++++
T Consensus 2 KV~IiGaG~VG~~~a~~l~~~-----~~-----~~el~L~Di~~~~~~G~a~DL~h-~~~~~~~~~~i~~~~d~~~~~~- 69 (294)
T 2x0j_A 2 KLGFVGAGRVGSTSAFTCLLN-----LD-----VDEIALVDIAEDLAVGEAMDLAH-AAAGIDKYPKIVGGADYSLLKG- 69 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC-----CSEEEEECSSHHHHHHHHHHHHH-HHGGGTCCCEEEEESCGGGGTT-
T ss_pred EEEEECcCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCCCcchhhhhhhhc-ccccCCCCCeEecCCCHHHhCC-
Confidence 799999999999988887652 55 25799999752111111001322 1122211111 1122356766
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .-+++++.+++++...||.-.|||.
T Consensus 70 -aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPv 121 (294)
T 2x0j_A 70 -SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121 (294)
T ss_dssp -CSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred -CCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 89998555544 31 1146788889999999999999998
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=81.65 E-value=2.5 Score=41.53 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=57.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
.||.|+|+ |..|..+|..|... |. +++++|+. . +.+...+. + .-...++.++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~-----g~-------~V~~~~r~----~---~~~~~~~~-~---g~~~~~~~~~~~~- 67 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS-----AH-------HLAAIEIA----P---EGRDRLQG-M---GIPLTDGDGWIDE- 67 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS-----SS-------EEEEECCS----H---HHHHHHHH-T---TCCCCCSSGGGGT-
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CC-------EEEEEECC----H---HHHHHHHh-c---CCCcCCHHHHhcC-
Confidence 48999999 99999999988652 53 68888863 1 11111111 1 1111356677765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
+|++|= +..+.. .+++++.+..+. +..||.-+|+..
T Consensus 68 -aDvVi~-av~~~~-~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 68 -ADVVVL-ALPDNI-IEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp -CSEEEE-CSCHHH-HHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred -CCEEEE-cCCchH-HHHHHHHHHHhCCCCCEEEECCCCc
Confidence 898884 333333 688888887643 456777788854
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.62 E-value=1.4 Score=46.74 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~ 347 (585)
.||.|+|||+=|+.+|..|.+.
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n 56 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN 56 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHc
Confidence 3899999999999999999875
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=81.60 E-value=1.9 Score=44.77 Aligned_cols=107 Identities=17% Similarity=0.351 Sum_probs=64.3
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc-CCCCCHHHH
Q 007904 323 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDA 400 (585)
Q Consensus 323 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-~~~~~L~e~ 400 (585)
+...||.|+|| |..|..+|-.++. .|+ ...+.++|.+-=..++-.-+|.+. .|.... .-..++.++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~-----~g~-----~~evvLiDi~~~k~~g~a~DL~~~--~~~~~~i~~t~d~~~a 73 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAM-----MRL-----TPNLCLYDPFAVGLEGVAEEIRHC--GFEGLNLTFTSDIKEA 73 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHH-----TTC-----CSCEEEECSCHHHHHHHHHHHHHH--CCTTCCCEEESCHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHh-----cCC-----CCEEEEEeCCchhHHHHHHhhhhC--cCCCCceEEcCCHHHH
Confidence 34679999998 9999999865544 375 246999997410000000012221 221100 011478888
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcE-EEecCCCC
Q 007904 401 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPL-ILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPI-IFaLSNPt 443 (585)
+++ .|++|=+.+.+ | ..-+++++.+.+++..-+ |+-.|||.
T Consensus 74 l~d--ADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPv 129 (343)
T 3fi9_A 74 LTD--AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPA 129 (343)
T ss_dssp HTT--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSH
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCch
Confidence 987 89888444333 3 123567778888998885 88899997
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=81.59 E-value=3 Score=44.73 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=61.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 403 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~ 403 (585)
..||.|+|+|..|..+|..|.+. |. +++++|+. . +.+......+.. ......++.|+++.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~-----G~-------~V~v~dr~----~---~~~~~l~~~~~~~gi~~~~s~~e~v~~ 65 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESR-----GY-------TVAIYNRT----T---SKTEEVFKEHQDKNLVFTKTLEEFVGS 65 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS----H---HHHHHHHHHTTTSCEEECSSHHHHHHT
T ss_pred CCcEEEEeeHHHHHHHHHHHHhC-----CC-------EEEEEcCC----H---HHHHHHHHhCcCCCeEEeCCHHHHHhh
Confidence 36899999999999999988753 64 57788763 1 111111111100 01123578888875
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 404 I-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 404 v-kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
. +||++| ++.+.+...+++++.+.... +..||.-+||-.
T Consensus 66 l~~aDvVi-lavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (474)
T 2iz1_A 66 LEKPRRIM-LMVQAGAATDATIKSLLPLLDIGDILIDGGNTH 106 (474)
T ss_dssp BCSSCEEE-ECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred ccCCCEEE-EEccCchHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 3 588877 44444445677888776544 356788888864
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=81.58 E-value=3.3 Score=44.11 Aligned_cols=71 Identities=25% Similarity=0.374 Sum_probs=47.7
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 325 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 325 d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
--|++|+|+ |.+|.|-++.+... |.. ..++..+|.+= ..++. +| +.+..
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~l-----Ga~----~~~V~v~D~~~---~~~g~-------~~-----------~~i~~ 263 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKV-----GIP----DANILKWDIKE---TSRGG-------PF-----------DEIPQ 263 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHT-----TCC----GGGEEEECHHH---HTTCS-------CC-----------THHHH
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhC-----CCC----cCceEEeeccc---cccCC-------ch-----------hhHhh
Confidence 468999999 99999999888653 641 11566666530 01100 01 23443
Q ss_pred cCCcEEEeccCC----CCCCCHHHHHHH
Q 007904 404 IKPTILIGSSGV----GRTFTKEVIEAM 427 (585)
Q Consensus 404 vkptvLIG~S~~----~g~Ft~evi~~M 427 (585)
.|++||+--. |-++|+|+++.|
T Consensus 264 --aDivIn~vlig~~aP~Lvt~e~v~~m 289 (394)
T 2qrj_A 264 --ADIFINCIYLSKPIAPFTNMEKLNNP 289 (394)
T ss_dssp --SSEEEECCCCCSSCCCSCCHHHHCCT
T ss_pred --CCEEEECcCcCCCCCcccCHHHHhcC
Confidence 8999998754 568999999988
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=81.47 E-value=1.2 Score=42.23 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=55.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
-...||.|+|+|..|..+|..+... |. +++++|++- ++ .. .++...-...++.++++
T Consensus 26 ~~~~~I~iiG~G~~G~~la~~l~~~-----g~-------~V~~~~r~~----~~---~~----~~~~~g~~~~~~~~~~~ 82 (215)
T 2vns_A 26 DEAPKVGILGSGDFARSLATRLVGS-----GF-------KVVVGSRNP----KR---TA----RLFPSAAQVTFQEEAVS 82 (215)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEESSH----HH---HH----HHSBTTSEEEEHHHHTT
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---HH----HHHHcCCceecHHHHHh
Confidence 3456899999999999999888652 53 588888741 11 11 11111001126778887
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 403 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
. +|++|=+.. +. ..+++++ ++...+.-+|.-+||+..
T Consensus 83 ~--~DvVi~av~-~~-~~~~v~~-l~~~~~~~~vv~~s~g~~ 119 (215)
T 2vns_A 83 S--PEVIFVAVF-RE-HYSSLCS-LSDQLAGKILVDVSNPTE 119 (215)
T ss_dssp S--CSEEEECSC-GG-GSGGGGG-GHHHHTTCEEEECCCCCH
T ss_pred C--CCEEEECCC-hH-HHHHHHH-HHHhcCCCEEEEeCCCcc
Confidence 5 898884433 32 3455554 433335668899999873
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=81.38 E-value=0.72 Score=42.92 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=59.1
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc---c--ccCCCCCHHHH
Q 007904 327 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---H--EHEPVNNLLDA 400 (585)
Q Consensus 327 riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa---~--~~~~~~~L~e~ 400 (585)
||+|+| +|..|..+|..|.+ .| .+++++|++ .++ ....+..+. . +.. ..++.++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~-----~g-------~~V~~~~r~----~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~ 61 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLAT-----LG-------HEIVVGSRR----EEK---AEAKAAEYRRIAGDASIT-GMKNEDA 61 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-----TT-------CEEEEEESS----HHH---HHHHHHHHHHHHSSCCEE-EEEHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHH-----CC-------CEEEEEeCC----HHH---HHHHHHHhccccccCCCC-hhhHHHH
Confidence 799999 99999999988864 25 368888874 111 111111110 0 011 2468888
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 401 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
++. .|++|=+.. +. ..+++++.+....+..+|.-++|+.+
T Consensus 62 ~~~--~D~Vi~~~~-~~-~~~~~~~~l~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 62 AEA--CDIAVLTIP-WE-HAIDTARDLKNILREKIVVSPLVPVS 101 (212)
T ss_dssp HHH--CSEEEECSC-HH-HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred Hhc--CCEEEEeCC-hh-hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 876 899885443 32 35677777754334679999999764
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=81.13 E-value=1.3 Score=44.70 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
.|++.+++..| +.+++|+|||.+|-+++..|.+. | .+|+++++. .++.+.+. .+.-
T Consensus 107 ~Gf~~~L~~~~----~k~vlvlGaGGaaraia~~L~~~-----G-------~~v~V~nRt----~~ka~~la----~~~~ 162 (269)
T 3phh_A 107 LGFYLSLKQKN----YQNALILGAGGSAKALACELKKQ-----G-------LQVSVLNRS----SRGLDFFQ----RLGC 162 (269)
T ss_dssp HHHHHHCC-------CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSS----CTTHHHHH----HHTC
T ss_pred HHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC----HHHHHHHH----HCCC
Confidence 35666665433 78999999999998888887653 4 578988884 22211121 1110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC----CCCCHHHHH-HHHcCCCCcEEEecC
Q 007904 390 EHEPVNNLLDAVKVIKPTILIGSSGVG----RTFTKEVIE-AMASFNEKPLILALS 440 (585)
Q Consensus 390 ~~~~~~~L~e~v~~vkptvLIG~S~~~----g~Ft~evi~-~Ma~~~erPIIFaLS 440 (585)
.......| . ++|++|-++..+ -.+.++.+. .+. +..+|+=++
T Consensus 163 ~~~~~~~l----~--~~DiVInaTp~Gm~~~~~l~~~~l~~~l~---~~~~v~D~v 209 (269)
T 3phh_A 163 DCFMEPPK----S--AFDLIINATSASLHNELPLNKEVLKGYFK---EGKLAYDLA 209 (269)
T ss_dssp EEESSCCS----S--CCSEEEECCTTCCCCSCSSCHHHHHHHHH---HCSEEEESC
T ss_pred eEecHHHh----c--cCCEEEEcccCCCCCCCCCChHHHHhhCC---CCCEEEEeC
Confidence 10111222 1 699999766544 146777554 343 455776554
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=80.96 E-value=3.2 Score=39.88 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=59.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
.||.|+|+|..|..+|..|.+. |.. ..++++++|++ . +.+...++.+ ......++.|+++.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~-----g~~---~~~~V~~~~r~----~---~~~~~~~~~~--g~~~~~~~~e~~~~-- 63 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK-----NIV---SSNQIICSDLN----T---ANLKNASEKY--GLTTTTDNNEVAKN-- 63 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TSS---CGGGEEEECSC----H---HHHHHHHHHH--CCEECSCHHHHHHH--
T ss_pred CeEEEECccHHHHHHHHHHHhC-----CCC---CCCeEEEEeCC----H---HHHHHHHHHh--CCEEeCChHHHHHh--
Confidence 5899999999999999988763 531 12468888873 1 1122221111 11123578899887
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
+|++|= +..+ -..+++++.+..+. +..+|...++-.+
T Consensus 64 aDvVil-av~~-~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 64 ADILIL-SIKP-DLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp CSEEEE-CSCT-TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred CCEEEE-EeCH-HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 888873 3333 45678888877554 4557777777664
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=80.59 E-value=0.86 Score=47.16 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=66.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLD 399 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e 399 (585)
+....||.|+|||..|.++|-.|+.. |+ ...+.++|.+-=..++-.-+|.+ -..|.... ....+..
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~-----~~-----~~el~L~Di~~~~~~g~a~DL~~-~~~~~~~~~i~~~~d~~- 83 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMK-----DL-----ADELALVDVIEDKLKGEMMDLQH-GSLFLKTPKIVSSKDYS- 83 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSCHHHHHHHHHHHHH-TGGGCSCCEEEECSSGG-
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhC-----CC-----CceEEEEeCChHHHHHHHHhhhh-hhhccCCCeEEEcCCHH-
Confidence 34567999999999999999888652 54 25799999741000000001221 11232110 0123453
Q ss_pred HhcccCCcEEEeccCC---CC-----CC------CHHHHHHHHcCCCCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGSSGV---GR-----TF------TKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~---~g-----~F------t~evi~~Ma~~~erPIIFaLSNPt 443 (585)
++++ .|++|=+.+. +| +| -+++.+.|+++|+.-+|+-.|||.
T Consensus 84 ~~~~--aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPv 139 (331)
T 4aj2_A 84 VTAN--SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPV 139 (331)
T ss_dssp GGTT--EEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred HhCC--CCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH
Confidence 5666 8888734333 33 12 257888899999999999999998
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=80.58 E-value=1.4 Score=47.40 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHc-CCCeee--ccCCCchHHHHHHHHHHHHHHhC--------CCcc
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG-TTHLVF--NDDIQGTASVVLAGVVAALKLIG--------GTLA 324 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr-~~~~~F--nDDiQGTaaV~lAgll~A~r~~g--------~~l~ 324 (585)
+..+++.+...+ ++ |.|+-+....-.++-++|. ..+|++ |+..-+.+.....-|+..+.... ..-.
T Consensus 135 ~~~~l~~~a~~~-~~--v~~~~vd~~~~~~~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~ 211 (521)
T 1hyu_A 135 VVQALNLMAVLN-PR--IKHTAIDGGTFQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRD 211 (521)
T ss_dssp HHHHHHHHHHHC-TT--EEEEEEETTTCHHHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHHHHTSC
T ss_pred HHHHHHHHHhHc-Cc--eEEEEEechhhHHHHHHhCCCccCEEEECCEEEecCCCCHHHHHHHHhhcccccccccccccC
Confidence 555666666667 44 5555444445567888986 467744 66566667666666666543321 0113
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..+|+|+|||.||+..|..+.+ .|+ ++.++|++
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~-----~G~-------~v~lie~~ 244 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSAR-----KGI-------RTGLMGER 244 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred cccEEEECCcHHHHHHHHHHHh-----CCC-------eEEEEECC
Confidence 4679999999999999988765 364 56777753
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=80.58 E-value=1.6 Score=47.21 Aligned_cols=36 Identities=6% Similarity=-0.145 Sum_probs=26.3
Q ss_pred CcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 480 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 480 ~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
.||+.-|-+++|.+.=++.+....-++.+.+..|.+
T Consensus 232 ~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 232 CKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 688888888889888777777333377777766654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=80.31 E-value=2 Score=45.59 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=63.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 401 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 401 (585)
.++.+||+|+|.|.+|+++|++|.+ .| .++...|.+-.-.....+.|.....++-.. ..-.+.+
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~-----~G-------~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g----~~~~~~~ 69 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAK-----LG-------AIVTVNDGKPFDENPTAQSLLEEGIKVVCG----SHPLELL 69 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHH-----TT-------CEEEEEESSCGGGCHHHHHHHHTTCEEEES----CCCGGGG
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHh-----CC-------CEEEEEeCCcccCChHHHHHHhCCCEEEEC----CChHHhh
Confidence 4678999999999999999888875 37 468889985311000000011111111100 0111122
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCC
Q 007904 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 467 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGS 467 (585)
.. .+|.+|=.++.+ .=++++.++.. ..-||| +.+ |-++...+++.|-.|||
T Consensus 70 ~~-~~d~vv~spgi~-~~~p~~~~a~~--~gi~v~-------~~~----e~~~~~~~~~~IaVTGT 120 (451)
T 3lk7_A 70 DE-DFCYMIKNPGIP-YNNPMVKKALE--KQIPVL-------TEV----ELAYLVSESQLIGITGS 120 (451)
T ss_dssp GS-CEEEEEECTTSC-TTSHHHHHHHH--TTCCEE-------CHH----HHHHHHCCSEEEEEECS
T ss_pred cC-CCCEEEECCcCC-CCChhHHHHHH--CCCcEE-------eHH----HHHHHhcCCCEEEEECC
Confidence 21 167777555554 24677666554 345665 222 33444566788888997
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=80.17 E-value=2.1 Score=44.84 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=53.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-----------ccCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----------EHEPV 394 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-----------~~~~~ 394 (585)
.||+|+|||..|..+++.|.+ .|- .-.++.++|++ .++ +......+.. +....
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~-----~g~----~~~~V~v~~r~----~~~---~~~la~~l~~~~~~~~~~~~~D~~d~ 65 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAM-----NRE----VFSHITLASRT----LSK---CQEIAQSIKAKGYGEIDITTVDADSI 65 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-----CTT----TCCEEEEEESC----HHH---HHHHHHHHHHTTCCCCEEEECCTTCH
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC----CceEEEEEECC----HHH---HHHHHHHhhhhcCCceEEEEecCCCH
Confidence 489999998666666665543 231 01478888874 111 2111111211 11112
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 395 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 395 ~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
.++.++++..++|++|=+++.. +..+++++..+.. ..+| -+|+
T Consensus 66 ~~l~~~l~~~~~DvVin~ag~~--~~~~v~~a~l~~g-~~vv-D~a~ 108 (405)
T 4ina_A 66 EELVALINEVKPQIVLNIALPY--QDLTIMEACLRTG-VPYL-DTAN 108 (405)
T ss_dssp HHHHHHHHHHCCSEEEECSCGG--GHHHHHHHHHHHT-CCEE-ESSC
T ss_pred HHHHHHHHhhCCCEEEECCCcc--cChHHHHHHHHhC-CCEE-EecC
Confidence 4588888888999999776532 3566666654433 3444 2544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=80.14 E-value=2 Score=42.13 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.||.|+|+|..|..+|..+... | .+++++|++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~-----G-------~~V~~~dr~ 33 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA-----G-------CSVTIWNRS 33 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSS
T ss_pred CEEEEEeecHHHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 5899999999999999998763 6 367888874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 585 | ||||
| d1o0sa2 | 294 | c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent | 1e-136 | |
| d1gq2a2 | 257 | c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent | 1e-134 | |
| d1pj3a2 | 259 | c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent | 1e-131 | |
| d1pj3a1 | 294 | c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent | 1e-103 | |
| d1o0sa1 | 308 | c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent | 1e-101 | |
| d1gq2a1 | 298 | c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent | 3e-95 | |
| d1vl6a1 | 222 | c.2.1.7 (A:155-376) Malate oxidoreductase (malic e | 2e-47 | |
| d1vl6a2 | 154 | c.58.1.3 (A:1-154) Malate oxidoreductase (malic en | 3e-06 |
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Score = 395 bits (1016), Expect = e-136
Identities = 146/289 (50%), Positives = 197/289 (68%), Gaps = 16/289 (5%)
Query: 28 EDVYGEDRATEDQ------------LVTPWT--ISVARDPRHNKGLAFTEKERDAHYLRG 73
EDVY + D+ VTP + ++PR NKG+ F+ ER L G
Sbjct: 6 EDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHG 65
Query: 74 LLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVY 133
LLPPA ++Q+ Q +++ +R+ L +Y+ + L++RNE+LFY+++ D+V+EL+P+VY
Sbjct: 66 LLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVY 125
Query: 134 TPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLG 191
TPTVG ACQ +G I+R+P+GLYI++ + KI ++L NW E ++ IVVTDGERILGLG
Sbjct: 126 TPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLG 185
Query: 192 DLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQE 251
DLG G+GIPVGKLALY ALGG++P CLP+ +DVGTNN LL D FYIGLR +R G++
Sbjct: 186 DLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKD 245
Query: 252 YAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD 300
Y LLD FM A + YG+K LIQFEDFAN NAF LL KY + +FNDD
Sbjct: 246 YDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 294
|
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Score = 390 bits (1004), Expect = e-134
Identities = 145/254 (57%), Positives = 182/254 (71%)
Query: 47 ISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAM 106
V RDP NKG+AFT +ER + GLLPP + Q Q ++ + + L +Y+ +
Sbjct: 4 YEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILL 63
Query: 107 MELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILE 166
M L++RNE+LFYK+L ++E +P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I
Sbjct: 64 MSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIAT 123
Query: 167 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDV 226
+L++WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P CLP+ +DV
Sbjct: 124 MLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDV 183
Query: 227 GTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL 286
GT+NE LLKD YIGLR +R GQ Y +LLDEFM AV YG LIQFEDFAN NAF L
Sbjct: 184 GTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRL 243
Query: 287 LAKYGTTHLVFNDD 300
L KY + FNDD
Sbjct: 244 LHKYRNKYCTFNDD 257
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Score = 382 bits (984), Expect = e-131
Identities = 139/254 (54%), Positives = 186/254 (73%)
Query: 47 ISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAM 106
+ +PR NKG+AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+ +
Sbjct: 6 KPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYI 65
Query: 107 MELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILE 166
M ++ERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 66 MGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRS 125
Query: 167 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDV 226
++ NWPE ++ +VVTDGERILGLGDLG GMGIPVGKL LYTA GIRP CLP+ +DV
Sbjct: 126 IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDV 185
Query: 227 GTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL 286
GT+N LLKD FY+GL Q+R Q+Y +L+DEFM A+ YG LIQFEDF NHNAF
Sbjct: 186 GTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRF 245
Query: 287 LAKYGTTHLVFNDD 300
L KY + FNDD
Sbjct: 246 LRKYREKYCTFNDD 259
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Score = 310 bits (796), Expect = e-103
Identities = 127/287 (44%), Positives = 184/287 (64%), Gaps = 4/287 (1%)
Query: 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360
IQGTA+V LAG++AA K+I ++EH+ LFLGAGEA GIA LI + + + +E +
Sbjct: 1 IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVEN-GLSEQEAQ 59
Query: 361 KKICLVDSKGLIVSSRKDSLQHFKKP--WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT 418
KKI + D GL+V RK + +++P + + DAV ++KP+ +IG +G GR
Sbjct: 60 KKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRL 119
Query: 419 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGK 477
FT +VI AMAS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSPF P + +G+
Sbjct: 120 FTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGR 179
Query: 478 VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537
VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E +G +YPP +N
Sbjct: 180 VFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLAN 239
Query: 538 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
I+++S NIA V Y +A R P P++ K + + Y +
Sbjct: 240 IQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSL 286
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Score = 308 bits (790), Expect = e-101
Identities = 117/284 (41%), Positives = 175/284 (61%), Gaps = 2/284 (0%)
Query: 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360
IQGTASV++AG++ ++ +++ ++LF GAG A TGIAE+I ++ + EE
Sbjct: 1 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEG-ISKEEAC 59
Query: 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT 420
+I L+D GL+ +RK+ +A + ++L+ ++ +P LIG+S V F
Sbjct: 60 NRIYLMDIDGLVTKNRKEMNPR-HVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFN 118
Query: 421 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 480
+EVI AMA NE+P+I ALSNPTS++ECTAEEAYT++ G A++ASGSPF FE NG +
Sbjct: 119 EEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYK 178
Query: 481 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRK 540
PGQ NNAYIFPG LG ++ V +D+ L A++ +A VTE++ + G +YP IR+
Sbjct: 179 PGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIRE 238
Query: 541 ISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
IS IA +A Y+ G A P+P++L K + +Y Y
Sbjct: 239 ISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEEL 282
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Score = 291 bits (746), Expect = 3e-95
Identities = 131/285 (45%), Positives = 192/285 (67%), Gaps = 3/285 (1%)
Query: 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360
IQGTASV +AG++AAL++ L++H LF GAGEA GIA LI + + K+ EE
Sbjct: 1 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAI 59
Query: 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT 420
K+I +VDSKGLIV R K+ +AHEH + NL D VK IKPT+LIG + +G FT
Sbjct: 60 KRIWMVDSKGLIVKGRASLTPE-KEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFT 118
Query: 421 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVF 479
+++++ MA+FN++P+I ALSNPTS++ECTAE+ Y +++GR IFASGSPFDP +G+
Sbjct: 119 QQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTL 178
Query: 480 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIR 539
PGQ NN+Y+FPG LG++ G + DD+ L +E +A++V+EEN ++G +YPP I+
Sbjct: 179 YPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQ 238
Query: 540 KISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
++S IA +A +AY A+ P+P++L S +Y+ Y +
Sbjct: 239 QVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 283
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Score = 163 bits (414), Expect = 2e-47
Identities = 60/255 (23%), Positives = 97/255 (38%), Gaps = 34/255 (13%)
Query: 300 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 359
D QGTA VV A + ALKL + E + + G G AG I + + ++
Sbjct: 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLG 49
Query: 360 RKKICLVDSKGLIVSSRKDSL-QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT 418
K + VD KG++ + ++ + A P D ++ G
Sbjct: 50 VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNI 109
Query: 419 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 478
E + + KP+I AL+NP + + G I A+G P +
Sbjct: 110 LKPEW---IKKMSRKPVIFALANPVPEIDPE----LAREAGAFIVATGRSDHPNQV---- 158
Query: 479 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 538
NN FPG G V + ++ +MLL+A EA+A+ E I P ++
Sbjct: 159 ------NNLLAFPGIMKGAVEKRS-KITKNMLLSAVEAIARSCE---PEPERIIPEAFDM 208
Query: 539 RKISANIAANVAAKA 553
+ + N+ V A
Sbjct: 209 K-VHLNVYTAVKGSA 222
|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Score = 45.2 bits (107), Expect = 3e-06
Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 50/163 (30%)
Query: 129 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 188
L ++YTP V + + P EK + N V VV+DG +L
Sbjct: 28 LSLLYTPGVADVARA---CAEDP--------EKTYVYTSRWNT------VAVVSDGSAVL 70
Query: 189 GLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRR 246
GLG++G G +PV GK L+ A I PI +
Sbjct: 71 GLGNIGPYG-ALPVMEGKAFLFKAFADI---DAFPICLS--------------------- 105
Query: 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAK 289
+ E + + +++ ++G I ED F +L +
Sbjct: 106 ---ESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQR 142
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| d1gq2a2 | 257 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1pj3a2 | 259 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1o0sa2 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 100.0 | |
| d1vl6a2 | 154 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 99.98 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.22 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.4 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.86 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.8 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.57 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.39 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.25 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.12 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.09 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.05 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.96 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.72 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.68 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.55 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.5 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 94.49 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 94.33 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.31 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.27 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.25 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 94.08 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.05 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 93.94 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.91 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.76 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.73 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.55 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.49 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.45 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.44 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 93.15 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 92.7 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 92.64 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.63 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.42 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 92.37 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 92.32 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 92.17 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 92.12 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.08 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 91.74 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 91.72 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 91.71 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 91.63 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 91.5 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.45 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 91.36 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.25 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 90.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.8 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.79 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.69 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.25 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.24 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 90.08 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 89.74 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.15 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 88.97 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 88.94 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 88.55 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.17 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 87.75 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 87.55 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.39 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 87.17 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 86.54 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 85.79 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 85.68 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 85.63 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 85.63 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 85.62 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 85.32 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 84.79 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.44 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 83.52 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 83.48 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 82.87 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.6 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 82.6 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 82.35 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 81.83 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 81.74 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 80.8 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 80.6 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 80.41 |
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=100.00 E-value=6.5e-115 Score=864.12 Aligned_cols=256 Identities=57% Similarity=1.025 Sum_probs=254.1
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
+|..+|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||++||+|||+++++|
T Consensus 2 rG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~~~l~Ky~yL~~L~~~Ne~LFY~ll~~~ 81 (257)
T d1gq2a2 2 KGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTSD 81 (257)
T ss_dssp CTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred ChHHHhcCCCccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+||||||||||+||++||++||+|+|||||++|+|+|+++|+|||.++|++||||||+|||||||||+||||||+||
T Consensus 82 ~~e~~PivYTPTVG~Ac~~ys~~yr~prGlyis~~d~g~i~~il~nwp~~~V~~iVVTDG~rILGlGD~G~~Gm~I~~gK 161 (257)
T d1gq2a2 82 IERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGK 161 (257)
T ss_dssp HHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHH
T ss_pred HHHhcCcccCccHHHHHHHHhhhhccccceeeccCChHHHHHHHHhCCCCCeeEEEEecCceeeecCCcCcCccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||+++||||||+++|||
T Consensus 162 l~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p~~~~i~~EDf~~~na~ 241 (257)
T d1gq2a2 162 LALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAF 241 (257)
T ss_dssp HHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHH
T ss_pred HHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhCCCCCEEehhhcCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHcCCCeeeccC
Q 007904 285 ELLAKYGTTHLVFNDD 300 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDD 300 (585)
++|+|||+++||||||
T Consensus 242 ~~L~~yr~~~~~FNDD 257 (257)
T d1gq2a2 242 RLLHKYRNKYCTFNDD 257 (257)
T ss_dssp HHHHHHTTTSEEEETT
T ss_pred HHHHHHccCCCccCCC
Confidence 9999999999999999
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-114 Score=863.07 Aligned_cols=257 Identities=54% Similarity=1.007 Sum_probs=255.0
Q ss_pred ccccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhcc
Q 007904 44 PWTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 123 (585)
Q Consensus 44 ~~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~ 123 (585)
.+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||++||+|||+++++
T Consensus 3 ~rG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~t~l~Ky~yL~~L~~~Ne~LFY~ll~~ 82 (259)
T d1pj3a2 3 EKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQD 82 (259)
T ss_dssp CCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHhcCCCccCcCCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchh
Q 007904 124 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 203 (585)
Q Consensus 124 ~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG 203 (585)
|++|+||||||||||+|||+||++||+|+|||||++|+|+|+++|+|||.++|++||||||||||||||+|++|||||+|
T Consensus 83 ~~~e~mPIvYTPTVg~Ac~~ys~~~r~prGlyis~~d~g~i~~il~nwp~~~v~~ivVTDG~rILGlGDlG~~Gm~I~~g 162 (259)
T d1pj3a2 83 DIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVG 162 (259)
T ss_dssp CHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHH
T ss_pred HHHHhCCeecCCchHHHHHHHHHhhcCccceEecccchhHHHHHHHhCCccCceEEEEecCceeecccccCcchhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH
Q 007904 204 KLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 283 (585)
Q Consensus 204 Kl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a 283 (585)
|++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+||||||+||+++|||+++||||||+++||
T Consensus 163 Kl~lyta~~Gi~P~~~lPv~lDvGTnNe~LL~DP~YlG~R~~R~~g~~Yd~fidefv~av~~~~gp~~li~~EDf~~~na 242 (259)
T d1pj3a2 163 KLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNA 242 (259)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred HHHHHHHcCCCChhhccceEEecCCcHHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhcCCCcEEehhhcCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeccC
Q 007904 284 FELLAKYGTTHLVFNDD 300 (585)
Q Consensus 284 f~lL~ryr~~~~~FnDD 300 (585)
|++|+|||+++||||||
T Consensus 243 ~~~L~~yr~~~~~fNDD 259 (259)
T d1pj3a2 243 FRFLRKYREKYCTFNDD 259 (259)
T ss_dssp HHHHHHHTTTSSEEEHH
T ss_pred HHHHHHhccCCCccCCC
Confidence 99999999999999998
|
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=100.00 E-value=1.9e-113 Score=865.08 Aligned_cols=256 Identities=54% Similarity=0.997 Sum_probs=254.3
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
+|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||++||+|||++|++|
T Consensus 37 rG~~lL~~p~lNKGtAFt~~ER~~l~L~GLLP~~v~tle~Qv~R~~~~~~~~~t~l~Ky~~L~~L~~~Ne~LFYrll~~h 116 (294)
T d1o0sa2 37 RSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDH 116 (294)
T ss_dssp CHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred cHHHHhcCCcccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhCchhhHHHHHhH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCc--chHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccch
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 202 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~--g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 202 (585)
++|+||||||||||+||++||++||+|+|||||++|+ |+|.++|+|||.++|++||||||||||||||||++||||||
T Consensus 117 ~ee~mPiVYTPTVG~Ac~~ys~~fr~prGlyisi~d~~~g~i~~il~nwp~~~V~~iVVTDG~rILGlGDlG~~Gm~I~~ 196 (294)
T d1o0sa2 117 VKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPV 196 (294)
T ss_dssp HHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHH
T ss_pred HHHhcCcccCccHHHHHHHHHhhhcCcceeEEeccccccchHHHHHhcCCcccceEEEEecCcceecccCcCcccchhhh
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCch
Q 007904 203 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 282 (585)
Q Consensus 203 GKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~ 282 (585)
||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+||||||+||+++|||+++||||||+++|
T Consensus 197 GKl~lyta~~Gi~P~~~LPV~LDvGTnNe~LL~DPlYlG~R~~R~~g~~Yd~fidefv~av~~~fgp~~li~~EDf~~~n 276 (294)
T d1o0sa2 197 GKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPN 276 (294)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHH
T ss_pred hHHHHHHHhcCCChhhccceEeecCCChHHhhcCcccccccCCCCCchHHHHHHHHHHHHHHHhhCCCCEEeehhCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeccC
Q 007904 283 AFELLAKYGTTHLVFNDD 300 (585)
Q Consensus 283 af~lL~ryr~~~~~FnDD 300 (585)
||++|+|||+++||||||
T Consensus 277 A~~iL~kyr~~~~~FNDD 294 (294)
T d1o0sa2 277 AFRLLDKYQDKYTMFNDD 294 (294)
T ss_dssp HHHHHHHHTTTSEEEEHH
T ss_pred HHHHHHHhcccCCccCCC
Confidence 999999999999999998
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=100.00 E-value=7.9e-99 Score=768.71 Aligned_cols=283 Identities=47% Similarity=0.818 Sum_probs=277.0
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+++|+++ |+|+|||+++|||||++|||+++|.+ +
T Consensus 1 IQGTaaV~lAglinAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~-G~~~~~a~~~i~l~D~kGlv~~~R~~-l 78 (298)
T d1gq2a1 1 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAIKRIWMVDSKGLIVKGRAS-L 78 (298)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHH-TCCHHHHHTTEEEEETTEECBTTCSS-C
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHc-CCChhhccceEEEEeCCCcccCCCcc-c
Confidence 899999999999999999999999999999999999999999999999884 99999999999999999999999965 8
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCc
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR 460 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Gr 460 (585)
.++|++|+++..+.++|.|+|+.+|||+|||+|+++|+||+|+|+.|+++|+|||||||||||+++||+|||+|+||+||
T Consensus 79 ~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~G~ 158 (298)
T d1gq2a1 79 TPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGR 158 (298)
T ss_dssp CTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTC
T ss_pred CHHHHHHHHHhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhcccc
Confidence 89999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccee-CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCch
Q 007904 461 AIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIR 539 (585)
Q Consensus 461 ai~AsGSPf~pv~~-~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ir 539 (585)
|||||||||+||++ +||+++||||||+|+|||||||++++||++|||+||++||++||++++++++..+.|||+++++|
T Consensus 159 ai~AsGspf~pv~~~~Grs~~pnQ~NN~~~FPGiglGal~~~A~~Itd~M~~aAA~alA~~v~~~~l~~g~i~P~~~~ir 238 (298)
T d1gq2a1 159 GIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQ 238 (298)
T ss_dssp CEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCCHHHHHHTCSSCCGGGHH
T ss_pred eEEeecCCCCCeEecCCeEEecCCCchhhhhhhHHHHHHHhhhhhCCHHHHHHHHHHHHHhcchhcCCCCceeCCcchHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007904 540 KISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585 (585)
Q Consensus 540 evs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~~ 585 (585)
+||.+||.||+++|+++|+|+..++|+|+++||+++||+|+|+||+
T Consensus 239 ~vs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~~w~P~Y~~~~ 284 (298)
T d1gq2a1 239 QVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCFV 284 (298)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHTTSCCCSCCCCS
T ss_pred HhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhcCCCcccCcC
Confidence 9999999999999999999998888999999999999999999973
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=100.00 E-value=2.8e-98 Score=766.80 Aligned_cols=283 Identities=41% Similarity=0.727 Sum_probs=277.1
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+++|++ +|+|+|||++||||||++|||+++|.+ +
T Consensus 1 IQGTa~V~lAglinAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~-~G~~~~~a~~~i~~vD~~Glv~~~r~d-~ 78 (308)
T d1o0sa1 1 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQN-EGISKEEACNRIYLMDIDGLVTKNRKE-M 78 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHT-TTCCHHHHHHTEEEEETTEECBTTCSS-C
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHh-cCCchhhhhceEEEEeCCCCccCCCcc-c
Confidence 79999999999999999999999999999999999999999999999997 599999999999999999999999964 9
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCc
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR 460 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Gr 460 (585)
+++|++||++..+..+|.|+|+.+|||+|||+|+++|+||++|||+|+++|+|||||||||||+++||+|||||+||+|+
T Consensus 79 ~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~E~~~eda~~~t~G~ 158 (308)
T d1o0sa1 79 NPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGA 158 (308)
T ss_dssp CGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSC
T ss_pred CHHHHHHHHhcccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCCCCCHHHHHhhccCc
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchh
Q 007904 461 AIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRK 540 (585)
Q Consensus 461 ai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ire 540 (585)
||||||||||||+++||+++||||||+|+|||||||++++||++|||+||++||++||++++++++..+.|||+++++|+
T Consensus 159 ai~AtGSpfp~V~~~Gr~~~p~Q~NN~liFPGIglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l~~g~i~P~~~~~r~ 238 (308)
T d1o0sa1 159 ALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIRE 238 (308)
T ss_dssp CEEEESSCCCCEEETTEEECCEECCGGGTHHHHHHHHHHHTBSCCCHHHHHHHHHHHHHTCCHHHHTTTCCSCCGGGHHH
T ss_pred EEEecCCCCCCeeecCceecccccceeeeccchheeeeecccccCCHHHHHHHHHHHHHhcCcccCCCCCCCCCCccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007904 541 ISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585 (585)
Q Consensus 541 vs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~~ 585 (585)
||.+||.||+++|+++|+|+..++|+|+++||++.||+|+|+|+.
T Consensus 239 vs~~VA~AVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~p~Y~~~~ 283 (308)
T d1o0sa1 239 ISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEELI 283 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCBCSSSCCSCHHHHHHHHSCCCSCCCCS
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999998888999999999999999999873
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-97 Score=759.31 Aligned_cols=283 Identities=45% Similarity=0.805 Sum_probs=275.2
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++||+|+||||||+|||+||+|||++|+.+|++ +|++++||++||||+|++|||+++|.+.+
T Consensus 1 IqGTa~V~lAglinAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~-~g~~~~~a~~~i~lvD~~Glv~~~r~~~~ 79 (294)
T d1pj3a1 1 IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVE-NGLSEQEAQKKIWMFDKYGLLVKGRKAKI 79 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHH-TTCCHHHHHHTEEEEETTEECBTTCSSCC
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHh-cCCchhhccccEEEEeCCCCccCCCCccc
Confidence 79999999999999999999999999999999999999999999999987 59999999999999999999999998779
Q ss_pred chhchhhccccCC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc
Q 007904 381 QHFKKPWAHEHEP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 458 (585)
Q Consensus 381 ~~~k~~fa~~~~~--~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~ 458 (585)
+++|++|+++.++ ..+|+|+|+.+|||+|||+|+++|+|||||||+|+++|+|||||||||||+++||+|||||+||+
T Consensus 80 ~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~ 159 (294)
T d1pj3a1 80 DSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTE 159 (294)
T ss_dssp CTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTT
T ss_pred HHHHHHhhccccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhhcc
Confidence 9999999986433 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCccee-CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007904 459 GRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537 (585)
Q Consensus 459 Grai~AsGSPf~pv~~-~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ 537 (585)
|||||||||||+||+| +||+++||||||+|+|||||||++++||++|||+|+++||++||+++++++++.+.|||++++
T Consensus 160 grai~asGspf~~v~~~~Gr~~~pnQ~NN~~iFPGiglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 239 (294)
T d1pj3a1 160 GRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLAN 239 (294)
T ss_dssp TCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHTTCCHHHHHTTCSSCCGGG
T ss_pred CceEeecCCccCCeEeCCCcEecCCCCceeccccchhhHHHhcCCCCcCHHHHHHHHHHHHhhCCccccCCCeecCCCcc
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCC
Q 007904 538 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584 (585)
Q Consensus 538 irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~ 584 (585)
+|+||.+||.+|+++|+++|+|+..++++|+.+||+++||+|+|+|+
T Consensus 240 ir~vs~~VA~aVa~~A~~~g~A~~~~~~~~~~~~i~~~~w~p~Y~~~ 286 (294)
T d1pj3a1 240 IQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSL 286 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHHTCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhcCCCccCcc
Confidence 99999999999999999999999888889999999999999999986
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.1e-70 Score=534.57 Aligned_cols=218 Identities=33% Similarity=0.448 Sum_probs=196.2
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCc-c
Q 007904 300 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-D 378 (585)
Q Consensus 300 DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-~ 378 (585)
||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++ |+++||++|++|||+++|. .
T Consensus 1 DiQGTaaV~LAgll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~-----------~~~~i~~~D~~GLi~~~r~~~ 69 (222)
T d1vl6a1 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDL-----------GVKNVVAVDRKGILNENDPET 69 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHH-----------TCCEEEEEETTEECCTTSGGG
T ss_pred CCchHHHHHHHHHHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHh-----------cccceEeecceeEEEcCcccc
Confidence 899999999999999999999999999999999999999999999753 5699999999999999996 4
Q ss_pred CCchhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 379 SLQHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 379 ~l~~~k~~fa~~~~~---~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
.++++|++|++.... ..+|.++|+. +|+++|+|+ +|+||+|++++| |+|||||||||||+ ||++++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~l~~~l~g--~~~~~g~~~-~~~~~~e~m~~~---~~rPIIFpLSNPt~--~~e~~~a-- 139 (222)
T d1vl6a1 70 CLNEYHLEIARITNPERLSGDLETALEG--ADFFIGVSR-GNILKPEWIKKM---SRKPVIFALANPVP--EIDPELA-- 139 (222)
T ss_dssp CSSHHHHHHHHTSCTTCCCSCHHHHHTT--CSEEEECSC-SSCSCHHHHTTS---CSSCEEEECCSSSC--SSCHHHH--
T ss_pred cccHHHHHHHhhhcchhhhcchHhhccC--cceeccccc-cccccHHHHhhc---CCCCEEEecCCCcc--chhhhhh--
Confidence 689999999986432 4689999986 899999997 779999876665 69999999999995 5556655
Q ss_pred cccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCC
Q 007904 456 WSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPF 535 (585)
Q Consensus 456 wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i 535 (585)
||+|+||||||||| +||||||+|||||||||+++++++ |||+||++||++||++++++ +++|||++
T Consensus 140 ~~~G~ai~AtGsp~----------~p~Q~NN~yiFPGiglGal~~~ar-itd~m~~aAA~alA~~~~~~---~~~i~P~~ 205 (222)
T d1vl6a1 140 REAGAFIVATGRSD----------HPNQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARSCEPE---PERIIPEA 205 (222)
T ss_dssp HHTTCSEEEESCTT----------SSSBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTSCCB---TTBSSCCT
T ss_pred eeccceEEecCCCC----------CCccCcceeecchHHHHHHHhccc-cchHHHHHHHHHHHhcCCCC---CCcccCCC
Confidence 88899999999986 469999999999999999999985 99999999999999999875 58999999
Q ss_pred CCchhhHHHHHHHHHHHH
Q 007904 536 SNIRKISANIAANVAAKA 553 (585)
Q Consensus 536 ~~irevs~~VA~aVa~~A 553 (585)
+++| ||.+||.+|+++|
T Consensus 206 ~~~r-Vs~~VA~aVa~~A 222 (222)
T d1vl6a1 206 FDMK-VHLNVYTAVKGSA 222 (222)
T ss_dssp TCHH-HHHHHHHHHHHCC
T ss_pred CChh-HHHHHHHHHHhhC
Confidence 9987 9999999999875
|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=99.98 E-value=3.5e-34 Score=263.54 Aligned_cols=126 Identities=28% Similarity=0.530 Sum_probs=111.9
Q ss_pred ccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCc-ccccchhhH
Q 007904 127 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGKL 205 (585)
Q Consensus 127 e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGKl 205 (585)
+.|+++|||+|+++|+++. +|+...+ .|+.+.+.|+|||||++||||||+|+. |||+|+||+
T Consensus 26 ~dLslaYTPGVA~~c~~I~-------------~dp~~~~----~yT~k~N~VAVVtdGtaVLGLGniGp~AalPVMEGKa 88 (154)
T d1vl6a2 26 ETLSLLYTPGVADVARACA-------------EDPEKTY----VYTSRWNTVAVVSDGSAVLGLGNIGPYGALPVMEGKA 88 (154)
T ss_dssp HHHHHHSTTTHHHHHHHHH-------------HCGGGHH----HHSGGGGEEEEEECSTTBTTTBSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHH-------------hCchhhh----heeeeccEEEEEeCCceeecCCCccccccccHHHHHH
Confidence 4699999999999999965 4555665 555667899999999999999999997 799999999
Q ss_pred HHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH
Q 007904 206 ALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 285 (585)
Q Consensus 206 ~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~ 285 (585)
.||+.+|||| ++|||||.. |.+ -+.++|+++.+.||. ||+|||++|+||+
T Consensus 89 ~LfK~fa~iD---a~Pi~l~~~-d~~-----------------------~iv~~v~~i~PtFgg---InLEDI~aP~CFe 138 (154)
T d1vl6a2 89 FLFKAFADID---AFPICLSES-EEE-----------------------KIISIVKSLEPSFGG---INLEDIGAPKCFR 138 (154)
T ss_dssp HHHHHHHCCE---EEEEECSCC-CHH-----------------------HHHHHHHHTGGGCSE---EEECSCCTTHHHH
T ss_pred HHHHHhcCCC---ceeeecccc-ChH-----------------------HHHHHHHHhcccccc---eehhhhcCchhhH
Confidence 9999999999 999999986 333 267789999999999 9999999999999
Q ss_pred HHHHHcC--CCeeecc
Q 007904 286 LLAKYGT--THLVFND 299 (585)
Q Consensus 286 lL~ryr~--~~~~FnD 299 (585)
+++|+|+ +||||||
T Consensus 139 Ie~~L~~~ldIPVfHD 154 (154)
T d1vl6a2 139 ILQRLSEEMNIPVFHD 154 (154)
T ss_dssp HHHHHHHHCSSCEEEH
T ss_pred HHHHHHHHCCCCCcCC
Confidence 9999974 8999998
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.22 E-value=3.4e-06 Score=76.53 Aligned_cols=121 Identities=19% Similarity=0.346 Sum_probs=87.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+|.-+|+-|++=-|.+..| .|++.+|+|+|||.+|..+++.|... |. ++++++.+. ..+ ..
T Consensus 2 ~g~vSv~~aAv~la~~~~~-~l~~~~ilviGaG~~g~~v~~~L~~~-----g~------~~i~v~nRt----~~k---a~ 62 (159)
T d1gpja2 2 EGAVSIGSAAVELAERELG-SLHDKTVLVVGAGEMGKTVAKSLVDR-----GV------RAVLVANRT----YER---AV 62 (159)
T ss_dssp CSCCSHHHHHHHHHHHHHS-CCTTCEEEEESCCHHHHHHHHHHHHH-----CC------SEEEEECSS----HHH---HH
T ss_pred CCcccHHHHHHHHHHHHhC-CcccCeEEEECCCHHHHHHHHHHHhc-----CC------cEEEEEcCc----HHH---HH
Confidence 5677777787766777776 79999999999999999998888763 65 789988763 111 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcC--CCCc-EEEecCCCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASF--NEKP-LILALSNPT 443 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~--~erP-IIFaLSNPt 443 (585)
...+.|--...+..++.+.+.. .|++|-+++.+ .+++++.++.+.+. ..+| +|+=||.|-
T Consensus 63 ~l~~~~~~~~~~~~~~~~~l~~--~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr 126 (159)
T d1gpja2 63 ELARDLGGEAVRFDELVDHLAR--SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR 126 (159)
T ss_dssp HHHHHHTCEECCGGGHHHHHHT--CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred HHHHhhhcccccchhHHHHhcc--CCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence 2222332222345678888876 99999887655 58999999876543 3577 788899995
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.0023 Score=57.85 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..|.++++.+++|+|||.||-+|+-.+.. .|. ++|+++++.
T Consensus 3 ~Gf~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~-----~g~------~~i~i~nR~ 51 (182)
T d1vi2a1 3 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 51 (182)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhh-----cCC------ceEeeeccc
Confidence 5899999999999999999999999888777655554 365 789999984
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.86 E-value=0.0043 Score=56.79 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=66.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc----CCCCCHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLD 399 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~----~~~~~L~e 399 (585)
.--|++|+|||-||..-+..... .| .+++++|.+ .+.+...+..|.... .....|.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~-----lG-------A~V~~~D~~-------~~~l~~l~~~~~~~~~~~~~~~~~l~~ 91 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG-----LG-------AQVQIFDIN-------VERLSYLETLFGSRVELLYSNSAEIET 91 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESC-------HHHHHHHHHHHGGGSEEEECCHHHHHH
T ss_pred CCcEEEEECCChHHHHHHHHHhh-----CC-------CEEEEEeCc-------HHHHHHHHHhhcccceeehhhhhhHHH
Confidence 46899999999999887766654 35 479999974 222333344443321 11235888
Q ss_pred HhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCC
Q 007904 400 AVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g-----~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
.++. .|++||+--.+| ++|+++|+.|. +.-+|.=+|-
T Consensus 92 ~~~~--aDivI~aalipG~~aP~lIt~~mv~~Mk---~GSVIVDvai 133 (168)
T d1pjca1 92 AVAE--ADLLIGAVLVPGRRAPILVPASLVEQMR---TGSVIVDVAV 133 (168)
T ss_dssp HHHT--CSEEEECCCCTTSSCCCCBCHHHHTTSC---TTCEEEETTC
T ss_pred hhcc--CcEEEEeeecCCcccCeeecHHHHhhcC---CCcEEEEeec
Confidence 8986 999999976554 79999999996 6778876653
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.80 E-value=0.011 Score=56.53 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC--
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-- 380 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l-- 380 (585)
.||-=+..++-.+++..+.+|++.||+|-|.|..|...|++|.+ .|. +=+-+-|++|-|+....-+.
T Consensus 9 ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGnVG~~~a~~L~~-----~Ga------kvv~vsD~~g~i~~~~Gld~~~ 77 (242)
T d1v9la1 9 ATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEK-----MGA------KVIAVSDINGVAYRKEGLNVEL 77 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHT-----TTC------EEEEEECSSCEEECTTCCCTHH
T ss_pred hhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------eEEEeecccccccccccccHHH
Confidence 46656666778888888999999999999999999999999975 364 44568899999887643111
Q ss_pred -chhchh-------hccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCC
Q 007904 381 -QHFKKP-------WAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSE 447 (585)
Q Consensus 381 -~~~k~~-------fa~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E 447 (585)
..++.. +....+... .-.+.+-.++.||||=++. ++.+|++.++.| ...+|.--+| |++ +|
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIliPcA~-~~~I~~~~a~~i----~ak~IvegAN~p~t-~~ 149 (242)
T d1v9la1 78 IQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI-ENVIRGDNAGLV----KARLVVEGANGPTT-PE 149 (242)
T ss_dssp HHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSC-SSCBCTTTTTTC----CCSEEECCSSSCBC-HH
T ss_pred HHHHhhcchhhHHHhhhhccCceEeeCcchhccccccEEeecch-hccccHHHHHhc----ccCEEEecCCCCCC-hh
Confidence 111111 111111111 1124455678999998876 569999998876 3445555555 873 44
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.57 E-value=0.042 Score=50.92 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.||-=+..++-++++..|. +|++.||+|.|-|..|..+|+.|.+. |. +++++|.+. +.+.
T Consensus 4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~-----Ga-------kvvv~d~d~-------~~~~ 64 (201)
T d1c1da1 4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEA-----GA-------QLLVADTDT-------ERVA 64 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCH-------HHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEecchH-------HHHH
Confidence 4666777788888888886 69999999999999999999998763 73 577777641 1121
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 444 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~ 444 (585)
..... ....-+..|+. .++.|+||=++. ++.+|++.++.| .-.+|.-=+| |++
T Consensus 65 ~~~~~----g~~~~~~~~~~-~~~~DI~iPcA~-~~~I~~~~a~~i----~ak~i~e~AN~p~~ 118 (201)
T d1c1da1 65 HAVAL----GHTAVALEDVL-STPCDVFAPCAM-GGVITTEVARTL----DCSVVAGAANNVIA 118 (201)
T ss_dssp HHHHT----TCEECCGGGGG-GCCCSEEEECSC-SCCBCHHHHHHC----CCSEECCSCTTCBC
T ss_pred HHHhh----cccccCccccc-cccceeeecccc-cccccHHHHhhh----hhheeeccCCCCcc
Confidence 11111 11123455554 458899997755 779999999998 3568888887 763
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.068 Score=50.59 Aligned_cols=122 Identities=18% Similarity=0.134 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
||-=+.-++-.+++..|.+|++.||+|-|.|..|...|+.|.+. .|. +=+-+-|++|-|+... .++..
T Consensus 10 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e----~Ga------~vv~vsd~~G~i~~~~--Gld~~ 77 (234)
T d1b26a1 10 TGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQE----LGS------KVVAVSDSRGGIYNPE--GFDVE 77 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHH----HCC------EEEEEEETTEEEECTT--CCCHH
T ss_pred hhHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHh----cCC------ceEEeecCCCcEEecc--ccchH
Confidence 55445556677888899999999999999999999999988653 253 4566889999988754 34332
Q ss_pred chhhcc-cc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 384 KKPWAH-EH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 384 k~~fa~-~~------~~--~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.....+ .. .. .-+-.+ +-.++.||||=++. ++.+|++.++.+ ...+|.--+|.-
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DI~~PcA~-~~~I~~~~a~~l----~~~~I~e~AN~p 140 (234)
T d1b26a1 78 ELIRYKKEHGTVVTYPKGERITNEE-LLELDVDILVPAAL-EGAIHAGNAERI----KAKAVVEGANGP 140 (234)
T ss_dssp HHHHHHHHSSCSTTCSSCEEECHHH-HHTSCCSEEEECSC-TTCBCHHHHTTC----CCSEEECCSSSC
T ss_pred HHHHHHHhhcceeccccceeecccc-ccccccceeecchh-cccccHHHHHHh----hhceEeecCCCC
Confidence 221111 10 00 013444 44579999997754 779999999988 457999999943
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.03 Score=50.75 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+||+--++-|++ |.|+..|...+++|+|-|--|-|+|+-+... | -+++++|.+ ..+ .|
T Consensus 3 ~yg~g~S~~~~~~---r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~-----G-------~~V~v~e~d----p~~--al 61 (163)
T d1li4a1 3 LYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQALRGF-----G-------ARVIITEID----PIN--AL 61 (163)
T ss_dssp HHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSC----HHH--HH
T ss_pred cccchhhHHHHHH---HHhCceecCCEEEEeccccccHHHHHHHHhC-----C-------CeeEeeecc----cch--hH
Confidence 4577777776665 6889999999999999999999999988653 6 468888763 110 12
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHHHh
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEAY 454 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tpeda~ 454 (585)
..+- +.-...++.|+++. .|++|-+++-..+.+.+.++.|. .-.|. +|=. ..-|+.-+...
T Consensus 62 ~A~~-----dG~~v~~~~~a~~~--adivvtaTGn~~vI~~eh~~~MK----dgaIL--~N~Ghfd~EId~~~L~ 123 (163)
T d1li4a1 62 QAAM-----EGYEVTTMDEACQE--GNIFVTTTGCIDIILGRHFEQMK----DDAIV--CNIGHFDVEIDVKWLN 123 (163)
T ss_dssp HHHH-----TTCEECCHHHHTTT--CSEEEECSSCSCSBCHHHHTTCC----TTEEE--EECSSSTTSBCHHHHH
T ss_pred Hhhc-----CceEeeehhhhhhh--ccEEEecCCCccchhHHHHHhcc----CCeEE--EEeccccceecHHHHh
Confidence 2111 22234579999987 99999999988899999999994 44443 3422 33677766543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.12 E-value=0.023 Score=51.18 Aligned_cols=105 Identities=20% Similarity=0.291 Sum_probs=69.6
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
|+-.+..+++.+..+..|.+|+++++||.|| |..|..+|+.+.+ .| -+++++|++ .++ +.
T Consensus 1 g~~~~~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~-----~G-------~~V~~~~r~----~~~---~~ 61 (191)
T d1luaa1 1 GSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAG-----EG-------AEVVLCGRK----LDK---AQ 61 (191)
T ss_dssp GHHHHHHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEESS----HHH---HH
T ss_pred CCCccHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHh-----hc-------cchhhcccc----hHH---HH
Confidence 4445677888999999999999999999995 7788888888765 36 368888885 111 22
Q ss_pred hhchhhcc---------ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHH
Q 007904 382 HFKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMA 428 (585)
Q Consensus 382 ~~k~~fa~---------~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma 428 (585)
.....+.. +......+.+++.. .|+||-..+.+ ...++|.++.+-
T Consensus 62 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--iDilin~Ag~g~~~~~~e~~~~~~ 116 (191)
T d1luaa1 62 AAADSVNKRFKVNVTAAETADDASRAEAVKG--AHFVFTAGAIGLELLPQAAWQNES 116 (191)
T ss_dssp HHHHHHHHHHTCCCEEEECCSHHHHHHHTTT--CSEEEECCCTTCCCBCHHHHHTCT
T ss_pred HHHHHHHhccchhhhhhhcccHHHHHHHhcC--cCeeeecCccccccCCHHHHHhhh
Confidence 11111111 11111357777775 79999877643 356777777654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.34 Score=42.02 Aligned_cols=84 Identities=23% Similarity=0.232 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh
Q 007904 308 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 387 (585)
Q Consensus 308 ~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f 387 (585)
.+|..+.|++..+.+. +++|+|+|+|..|+..+.++.. .|. ++++++|++ +.+..+
T Consensus 11 pla~a~~a~~~~~~~~-gd~VlI~G~G~iG~~~~~~a~~-----~G~------~~Vi~~d~~------------~~rl~~ 66 (171)
T d1pl8a2 11 PLSVGIHACRRGGVTL-GHKVLVCGAGPIGMVTLLVAKA-----MGA------AQVVVTDLS------------ATRLSK 66 (171)
T ss_dssp HHHHHHHHHHHHTCCT-TCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEESC------------HHHHHH
T ss_pred HHHHHHHHHHHhCCCC-CCEEEEECCCccHHHHHHHHHH-----cCC------ceEEeccCC------------HHHHHH
Confidence 3666788888876654 5689999999999866655543 364 689998874 233444
Q ss_pred ccc-------cCCCCCHHHHhc------ccCCcEEEeccCC
Q 007904 388 AHE-------HEPVNNLLDAVK------VIKPTILIGSSGV 415 (585)
Q Consensus 388 a~~-------~~~~~~L~e~v~------~vkptvLIG~S~~ 415 (585)
|++ .....+..+..+ ..++|+.|-+++.
T Consensus 67 a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 67 AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp HHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred HHHhCCcccccccccccccccccccccCCCCceEEEeccCC
Confidence 432 112234555443 3478999998874
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.05 E-value=0.012 Score=53.15 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=63.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhccc--cCCCCCHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHE--HEPVNNLLD 399 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~--~~~~~~L~e 399 (585)
.||.|+|||+.|...+ ++..+.+..++ +-..|+|+|.+ .++.+ .+.+....+..+ -....++.|
T Consensus 3 mKI~iIGaGsvg~t~~--~~~~l~~~~~l----~~~eivL~Did----~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~e 72 (171)
T d1obba1 3 VKIGIIGAGSAVFSLR--LVSDLCKTPGL----SGSTVTLMDID----EERLDAILTIAKKYVEEVGADLKFEKTMNLDD 72 (171)
T ss_dssp CEEEEETTTCHHHHHH--HHHHHHTCGGG----TTCEEEEECSC----HHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred cEEEEECCCHHHhHHH--HHHHHHhcccc----CCCEEEEEeCC----chHHHHHHHHHHHHHHhcCCCeEEEEeCChhh
Confidence 5999999999986643 22222221232 23589999985 11110 011111111111 011257999
Q ss_pred HhcccCCcEEEeccCC--------------------------------CCCC--------CHHHHHHHHcCCCCcEEEec
Q 007904 400 AVKVIKPTILIGSSGV--------------------------------GRTF--------TKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~--------------------------------~g~F--------t~evi~~Ma~~~erPIIFaL 439 (585)
+++. +|++|=..+. +|.| -+++++.+.++|+.-+++=.
T Consensus 73 aL~d--ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~ 150 (171)
T d1obba1 73 VIID--ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQA 150 (171)
T ss_dssp HHTT--CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred cccC--CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEE
Confidence 9987 8888733222 2222 26788999999999999999
Q ss_pred CCCC
Q 007904 440 SNPT 443 (585)
Q Consensus 440 SNPt 443 (585)
|||-
T Consensus 151 TNPv 154 (171)
T d1obba1 151 ANPI 154 (171)
T ss_dssp SSCH
T ss_pred CChH
Confidence 9997
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.96 E-value=0.025 Score=50.11 Aligned_cols=105 Identities=18% Similarity=0.312 Sum_probs=66.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhcccc---CCCCCHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 399 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e 399 (585)
+..||.|+|||.-|.-+|-+|.. .|+ .+++++|.+ +++. +...++.+. ..+.... ....+.++
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~-----~~~------~el~L~D~~~~~~~-g~a~Dl~~~-~~~~~~~~~~~~~~~~~~ 72 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCAL-----REL------ADVVLYDVVKGMPE-GKALDLSHV-TSVVDTNVSVRAEYSYEA 72 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----HTC------CEEEEECSSSSHHH-HHHHHHHHH-HHHTTCCCCEEEECSHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CCC------ceEEEEEeccccch-hHHHHHhhh-ccccCCeeEEeccCchhh
Confidence 45799999999988777766654 266 369999954 2111 000012211 1111111 11245778
Q ss_pred HhcccCCcEEEeccCCC---CC----------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGSSGVG---RT----------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~---g~----------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++. .|++|=+.+.+ |- .-+++++.++++|..-||+-.|||.
T Consensus 73 ~~~~--adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPv 133 (154)
T d1pzga1 73 ALTG--ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPL 133 (154)
T ss_dssp HHTT--CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred hhcC--CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcH
Confidence 8887 99998554433 31 2357888899999999999999998
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.72 E-value=0.023 Score=50.08 Aligned_cols=106 Identities=12% Similarity=0.212 Sum_probs=64.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVK 402 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~ 402 (585)
+..||.|+|||.-|..+|-.|+.. |+ ...+.++|.+==..++..-+|.+. ..+... .....+.+ .++
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~-----~~-----~~elvL~D~~~~~~~g~a~Dl~~a-~~~~~~~~~~~~d~~-~~~ 71 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQ-----GI-----AEEFVIVDVVKDRTKGDALDLEDA-QAFTAPKKIYSGEYS-DCK 71 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHGG-GGGSCCCEEEECCGG-GGT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-----CC-----CcEEEEeecccchhHHHHHHHhcc-ccccCCceEeeccHH-Hhc
Confidence 356999999999999999988874 66 256999996410000000012111 111111 00113454 455
Q ss_pred ccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ +|++|=+.+.+.. .-+++++.+.+++...||.-.|||.
T Consensus 72 ~--adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPv 124 (146)
T d1ez4a1 72 D--ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124 (146)
T ss_dssp T--CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred c--ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCcc
Confidence 4 8988865544321 1247788889999999999999998
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.68 E-value=0.02 Score=50.44 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=67.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~ 402 (585)
.||+|+|| |.-|..+|-+|.. .|+ .+.+.|+|.+-. ++...++. |-..|.... -...+..|+++
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~-----~~~-----~~elvLiDi~~~--~~~a~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 67 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKN-----SPL-----VSRLTLYDIAHT--PGVAADLS-HIETRATVKGYLGPEQLPDCLK 67 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHT-----CTT-----CSEEEEEESSSH--HHHHHHHT-TSSSSCEEEEEESGGGHHHHHT
T ss_pred CeEEEECCCChHHHHHHHHHHh-----CCc-----cceEEEEecccc--chhhHHHh-hhhhhcCCCeEEcCCChHHHhC
Confidence 38999997 9999999887764 466 367999997531 11000122 112222111 11246778888
Q ss_pred ccCCcEEEeccC---CCCC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSG---VGRT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~---~~g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
. .|++|=+.+ .+|- .-+++++.+.+++...||+-.|||.
T Consensus 68 ~--aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 120 (144)
T d1mlda1 68 G--CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV 120 (144)
T ss_dssp T--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred C--CCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch
Confidence 7 999984433 3332 2367888899999999999999998
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=94.55 E-value=0.097 Score=47.37 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
||+--++-||+ |.|+.-|...++|++|=|--|-|+|..+... | -++++++.+ |
T Consensus 4 g~g~S~~d~i~---r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~-----G-------a~V~V~E~D------------P 56 (163)
T d1v8ba1 4 GCRHSLPDGLM---RATDFLISGKIVVICGYGDVGKGCASSMKGL-----G-------ARVYITEID------------P 56 (163)
T ss_dssp HHHHHHHHHHH---HHHCCCCTTSEEEEECCSHHHHHHHHHHHHH-----T-------CEEEEECSC------------H
T ss_pred ccchhHHHHHH---HHhCceecCCEEEEecccccchhHHHHHHhC-----C-------CEEEEEecC------------c
Confidence 66666666665 6899999999999999999999999998664 5 467877653 2
Q ss_pred hchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC-cCCCCHHHHhc
Q 007904 383 FKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYT 455 (585)
Q Consensus 383 ~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~-~~E~tpeda~~ 455 (585)
.+.-=|+ +.-+..++.|+++. .|++|-+++..++++.+.++.|. +.-|+. |=.+ .-|+.-+...+
T Consensus 57 i~alqA~mdGf~v~~~~~a~~~--aDi~vTaTGn~~vI~~~h~~~MK---dgaIl~---N~GHfd~EIdv~~L~~ 123 (163)
T d1v8ba1 57 ICAIQAVMEGFNVVTLDEIVDK--GDFFITCTGNVDVIKLEHLLKMK---NNAVVG---NIGHFDDEIQVNELFN 123 (163)
T ss_dssp HHHHHHHTTTCEECCHHHHTTT--CSEEEECCSSSSSBCHHHHTTCC---TTCEEE---ECSSTTTSBCHHHHHT
T ss_pred hhhHHHHhcCCccCchhHcccc--CcEEEEcCCCCccccHHHHHHhh---CCeEEE---eccccchhhhhHHHHh
Confidence 2222222 22234689999997 99999999999999999999995 444443 3221 14665554433
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.028 Score=49.85 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
-|++.+++..|..+++++|+|+|||.|+-+|+-.|.+ .|. +|++++|. ..|.+ ...+.|..
T Consensus 3 ~Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~-----~g~-------~i~I~nRt----~~ka~---~l~~~~~~ 63 (170)
T d1nyta1 3 VGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS-----LDC-------AVTITNRT----VSRAE---ELAKLFAH 63 (170)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS----HHHHH---HHHHHTGG
T ss_pred hHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcc-----cce-------EEEeccch----HHHHH---HHHHHHhh
Confidence 4889999999999999999999999999888776644 253 49988873 22211 11222221
Q ss_pred ccC-CCCCHHHHhcccCCcEEEeccCCC
Q 007904 390 EHE-PVNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 390 ~~~-~~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
... ..-++.+ ....+.|++|-++..|
T Consensus 64 ~~~~~~~~~~~-~~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 64 TGSIQALSMDE-LEGHEFDLIINATSSG 90 (170)
T ss_dssp GSSEEECCSGG-GTTCCCSEEEECCSCG
T ss_pred ccccccccccc-ccccccceeecccccC
Confidence 110 0112322 2345689999887755
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.49 E-value=0.062 Score=51.07 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.||-=+.-++..+++..|. +|++.||+|-|-|..|..+|++|.+. .|. +=+-+.|++|-|+...+-+++
T Consensus 9 ATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~----~G~------kvv~vsD~~g~i~~~~G~d~~ 78 (239)
T d1gtma1 9 ATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSED----FGM------KVVAVSDSKGGIYNPDGLNAD 78 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHT----TCC------EEEEEECSSCEEEEEEEECHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCHHHHHHHHHHHHh----cCc------ceeeccccccceecCCcCCHH
Confidence 4666666777888898886 49999999999999999999988653 253 556678999988865321121
Q ss_pred hhchhhccc-----cCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007904 382 HFKKPWAHE-----HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 444 (585)
Q Consensus 382 ~~k~~fa~~-----~~~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~ 444 (585)
.-.+.+... -+.. -+-.+ +-.++.||||=++. ++.+|++.++.+ ...+|.--+| |++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~DIl~PcA~-~~~I~~~~a~~i----~ak~I~e~AN~p~t 143 (239)
T d1gtma1 79 EVLKWKNEHGSVKDFPGATNITNEE-LLELEVDVLAPAAI-EEVITKKNADNI----KAKIVAEVANGPVT 143 (239)
T ss_dssp HHHHHHHHHSSSTTCTTSEEECHHH-HHHSCCSEEEECSC-SCCBCTTGGGGC----CCSEEECCSSSCBC
T ss_pred HHHHHHHhccccccCCCCeeecccc-cccccccEEeeccc-cccccHHHHHhc----cccEEEecCCCCCC
Confidence 111111110 0011 13344 44579999997777 679999988876 5578888888 663
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.31 E-value=0.01 Score=52.50 Aligned_cols=101 Identities=14% Similarity=0.247 Sum_probs=62.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhcccc-CCCCCHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH-EPVNNLLDA 400 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~~-~~~~~L~e~ 400 (585)
.||.|+|||..|..+|-.|+.. |+ -..+.|+|.+ +++.. +|.+....+-.+. -..++. +.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~-----~~-----~~elvL~Di~----~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~ 66 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ-----GV-----ADDYVFIDAN----EAKVKADQIDFQDAMANLEAHGNIVINDW-AA 66 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSS----HHHHHHHHHHHHHHGGGSSSCCEEEESCG-GG
T ss_pred CeEEEECcCHHHHHHHHHHHhc-----CC-----CceEEEEecc----cchhhhHHHhhhccccccCCccceeccCH-HH
Confidence 5899999999999998888652 65 2579999963 22210 1221111110110 001233 45
Q ss_pred hcccCCcEEEeccCCC-------C-----------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVG-------R-----------TFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~-------g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++ .|++|=+.+.+ | .+-+++.+.+.++++.+||+--|||.
T Consensus 67 l~~--adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPv 125 (146)
T d1hyha1 67 LAD--ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV 125 (146)
T ss_dssp GTT--CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred hcc--ccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcH
Confidence 655 89988443321 1 12367888889999999999999998
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.27 E-value=0.012 Score=52.87 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=65.5
Q ss_pred ceEEEeCcchHHHHHH--HHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCC--ccCCch-hchhhccccCC-----CC
Q 007904 326 HRFLFLGAGEAGTGIA--ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--KDSLQH-FKKPWAHEHEP-----VN 395 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA--~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r--~~~l~~-~k~~fa~~~~~-----~~ 395 (585)
.||+|+|||+.|.+.+ .++.. ...+ ....|+|+|.+ +++ .+.+.. +...++....+ ..
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~----~~~~----~~~eI~L~Di~----e~~~~~~~~d~~~~~~~~~~~~~~~~~~~t 69 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKR----YHEL----PVGELWLVDIP----EGKEKLEIVGALAKRMVEKAGVPIEIHLTL 69 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT----TTTC----CEEEEEEECCG----GGHHHHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEECCChhhHHHHHHHHHHh----cccc----CCCEEEEEcCC----ccHHHHHHHHHHHHHHHHhcCCCceeeecC
Confidence 5899999999875432 22221 1122 12589999974 211 111222 22223221111 25
Q ss_pred CHHHHhcccCCcEEEeccCCCCCC----------------------------------CHHHHHHHHcCCCCcEEEecCC
Q 007904 396 NLLDAVKVIKPTILIGSSGVGRTF----------------------------------TKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~g~F----------------------------------t~evi~~Ma~~~erPIIFaLSN 441 (585)
+..++++. .|++|=+.+.++.- =+++++.|.++|+..+++=.||
T Consensus 70 d~~~al~g--aDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtN 147 (169)
T d1s6ya1 70 DRRRALDG--ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTN 147 (169)
T ss_dssp CHHHHHTT--CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CchhhcCC--CCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 78899987 89999777665410 1678999999999999999999
Q ss_pred CC
Q 007904 442 PT 443 (585)
Q Consensus 442 Pt 443 (585)
|.
T Consensus 148 Pv 149 (169)
T d1s6ya1 148 PA 149 (169)
T ss_dssp SH
T ss_pred hH
Confidence 97
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.25 E-value=0.052 Score=50.03 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=60.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh-----------------chh
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-----------------KKP 386 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~-----------------k~~ 386 (585)
.--+|||+|||-||.--++.-.. .| .+++++|.+ ..+.+.+... ...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~-----lG-------A~V~v~D~~----~~~~~~l~~l~~~~i~~~~~~~~~~~~~~g 91 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKR-----LG-------AVVMATDVR----AATKEQVESLGGKFITVDDEAMKTAETAGG 91 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEECSC----STTHHHHHHTTCEECCC-------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHH-----cC-------CEEEEEecc----HHHHHHHHHhhcceEEEecccccccccccc
Confidence 45799999999999866554433 35 478899974 1211111111 112
Q ss_pred hccccCC--C----CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 387 WAHEHEP--V----NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 387 fa~~~~~--~----~~L~e~v~~vkptvLIG~S~~~g-----~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
||+...+ . ..|.+.++. .|++||..-.+| ++|+++|+.|. +--+|.=||--
T Consensus 92 yA~~~s~~~~~~~~~~l~~~l~~--aDlVI~talipG~~aP~lit~~mv~~Mk---~GSVIVDvaid 153 (183)
T d1l7da1 92 YAKEMGEEFRKKQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMK---PGSVIIDLAVE 153 (183)
T ss_dssp ----------CCHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTTSC---TTCEEEETTGG
T ss_pred chhhcCHHHHHHHHHHHHHHHHh--hhhheeeeecCCcccceeehHHHHHhcC---CCcEEEEEeec
Confidence 3332111 1 135666665 999999976665 79999999997 77788877743
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=94.08 E-value=0.017 Score=51.37 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=61.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCHHHHhcc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~---~~~~~~L~e~v~~ 403 (585)
||.|+|||+.|...+-..+..... +..-..+.|+|.+ .++.....+.....+.. ..-..+..|++++
T Consensus 2 KIaiIGaGs~g~~~~~~~l~~~~~------~~~~~el~L~Did----~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~ 71 (162)
T d1up7a1 2 RIAVIGGGSSYTPELVKGLLDISE------DVRIDEVIFYDID----EEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD 71 (162)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHTT------TSCCCEEEEECSC----HHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHhccc------ccCccEEEEEecC----cHHHHHHHHHHHhhhccCceEEEecCcccccCC
Confidence 799999999876666444332211 1113679999974 22211000100011111 1112578899987
Q ss_pred cCCcEEEeccCCC---------------CCCCHH------------------HHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---------------RTFTKE------------------VIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---------------g~Ft~e------------------vi~~Ma~~~erPIIFaLSNPt 443 (585)
+|++|=..+.+ |.+..+ .+..|.++|+.-+++=.|||.
T Consensus 72 --aDvVVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~p~a~~i~vtNPv 142 (162)
T d1up7a1 72 --AKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPS 142 (162)
T ss_dssp --CSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred --CCEEEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccCCCeEEEEeCCHH
Confidence 89988666655 333322 144577889999999999998
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.05 E-value=0.023 Score=50.86 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++-.+..+++.+++|+|||.|+-.|+..|.+ | .++|++++|.
T Consensus 3 ~Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~------~------~~~i~I~nR~ 50 (171)
T d1p77a1 3 IGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQ------A------QQNIVLANRT 50 (171)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHH------T------TCEEEEEESS
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcc------c------Cceeeeccch
Confidence 4889999988999999999999999998887765543 3 2679999884
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=93.94 E-value=0.012 Score=53.16 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=64.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-c-----CCCCCHH
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H-----EPVNNLL 398 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~-----~~~~~L~ 398 (585)
.-||+|+|||+.|.. .++...|.+...+ .-..|+|+|.+ ++|.+.....-..++.. . ....+..
T Consensus 3 ~~KI~iIGaGsv~~~--~~~~~ll~~~~~l----~~~eivL~Did----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 72 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTP--GIVLMLLDHLEEF----PIRKLKLYDND----KERQDRIAGACDVFIREKAPDIEFAATTDPE 72 (167)
T ss_dssp CEEEEEECTTSSSHH--HHHHHHHHTTTTS----CEEEEEEECSC----HHHHHHHHHHHHHHHHHHCTTSEEEEESCHH
T ss_pred CceEEEECCChhhhH--HHHHHHHhhhhhc----CCCEEEEEcCC----hhHHHHHHHHHHHHHHHhCCCcceEecCChh
Confidence 468999999997543 3333333222222 12579999975 22211000000111111 1 1135899
Q ss_pred HHhcccCCcEEEeccCCCC---------------C-------------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGR---------------T-------------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g---------------~-------------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
|+++. +|++|=+.+.++ . +=+++++.|.++|+..+++-.|||.
T Consensus 73 eal~~--AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPv 149 (167)
T d1u8xx1 73 EAFTD--VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 149 (167)
T ss_dssp HHHSS--CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCH
T ss_pred hccCC--CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 99998 999996666542 1 1257889999999999999999998
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.91 E-value=0.014 Score=51.46 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=65.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~ 403 (585)
.||.|+|||.-|..+|-.++. .|+ -..+.|+|.+-=..++..-+|. |-..|.... ....+. |+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~-----~~l-----~~ElvL~D~~~~~~~g~a~Dl~-~a~~~~~~~~i~~~~~~-~~~~d 69 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQ-----RGI-----AREIVLEDIAKERVEAEVLDMQ-HGSSFYPTVSIDGSDDP-EICRD 69 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSHHHHHHHHHHHH-HTGGGSTTCEEEEESCG-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CcEEEEEEeccccchhHHHHHH-hccccCCCceeecCCCH-HHhhC
Confidence 589999999999999988865 377 3679999964211111100122 112232211 011344 45666
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+.. .-+++.+.+++++...|+.--|||.
T Consensus 70 --aDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPv 121 (143)
T d1llda1 70 --ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV 121 (143)
T ss_dssp --CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred --CcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCch
Confidence 8998866655421 2245677888999999999999998
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.76 E-value=0.035 Score=48.54 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=65.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
.||.|+|||.-|..+|-.|.. .|+ ...+.|+|.+.=..++..-+|.+ -..|.....-..+-.+.+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~L~D~~~~~~~g~a~Dl~~-~~~~~~~~~~~~~~~~~~~~-- 68 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMAL-----RQT-----ANELVLIDVFKEKAIGEAMDINH-GLPFMGQMSLYAGDYSDVKD-- 68 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTC-----SSEEEEECCC---CCHHHHHHTT-SCCCTTCEEEC--CGGGGTT--
T ss_pred CeEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeccCCccceeeeeecc-CcccCCCeeEeeCcHHHhCC--
Confidence 489999999999999987765 366 25699999543111111101221 11222111111222345555
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc
Q 007904 406 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 456 (585)
Q Consensus 406 ptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w 456 (585)
+|++|=+.+.+.. .-+++++.|.+++++.|++--|||.. ....-++++
T Consensus 69 adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvd---v~t~~~~k~ 130 (142)
T d1y6ja1 69 CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD---IITYMIQKW 130 (142)
T ss_dssp CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH---HHHHHHHHH
T ss_pred CceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHH---HHHHHHHHH
Confidence 8887755443321 12378888999999999999999972 233445554
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.35 Score=43.44 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 305 ASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 305 aaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
|=-+++.+|+.+|- .+..|.+++|.|+|.|..|..+|+++... |+ +++.+
T Consensus 6 AE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~f-----g~-------~v~~~ 73 (188)
T d1sc6a1 6 AELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL-----GM-------YVYFY 73 (188)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEE
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccc-----cc-------eEeec
Confidence 44467777777764 24568999999999999999999987543 64 58888
Q ss_pred cCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec-c---CCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 367 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS-S---GVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 367 D~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~-S---~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
|+..- ..... .....+|.|.++. .|+++=. . ..-++|+++.++.|. +.+++.=.|..
T Consensus 74 d~~~~--------~~~~~------~~~~~~l~ell~~--sDii~i~~plt~~T~~li~~~~l~~mk---~~a~lIN~aRG 134 (188)
T d1sc6a1 74 DIENK--------LPLGN------ATQVQHLSDLLNM--SDVVSLHVPENPSTKNMMGAKEISLMK---PGSLLINASRG 134 (188)
T ss_dssp CSSCC--------CCCTT------CEECSCHHHHHHH--CSEEEECCCSSTTTTTCBCHHHHHHSC---TTEEEEECSCS
T ss_pred ccccc--------chhhh------hhhhhhHHHHHhh--ccceeecccCCcchhhhccHHHHhhCC---CCCEEEEcCcH
Confidence 86421 11100 0123579999987 8988732 1 222799999999996 78898877765
Q ss_pred CC
Q 007904 443 TS 444 (585)
Q Consensus 443 t~ 444 (585)
.-
T Consensus 135 ~l 136 (188)
T d1sc6a1 135 TV 136 (188)
T ss_dssp SS
T ss_pred Hh
Confidence 43
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.03 Score=51.05 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=62.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc-cCCCccCCchh-----chhh----------cc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQHF-----KKPW----------AH 389 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi-~~~r~~~l~~~-----k~~f----------a~ 389 (585)
+||.|+|||..|.|||-++..+ |. +++++|++==. .+.+ +.+... ++.+ .+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~-----G~-------~V~l~D~~~~~l~~a~-~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT-----GH-------TVVLVDQTEDILAKSK-KGIEESLRKVAKKKFAENPKAGDEFVE 71 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCHHHHHHHH-HHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhC-----CC-------cEEEEECChHHHHHHH-hhHHHHHHHHHHhhhhccchhhHHHHH
Confidence 6999999999999999887763 75 68899874100 0000 000000 0000 00
Q ss_pred ----ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 390 ----EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 390 ----~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
.-....++.++++. .|.+|=+-.-.-...+++++.+.+.++.-.||+=+
T Consensus 72 ~~l~~i~~~~d~~~a~~~--ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasn 124 (192)
T d1f0ya2 72 KTLSTIATSTDAASVVHS--TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN 124 (192)
T ss_dssp HHHHTEEEESCHHHHTTS--CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred HHHhhccccchhHhhhcc--cceehhhcccchhHHHHHHHHHhhhcccCceeecc
Confidence 00123478888876 88888765544456888999998888777777533
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.49 E-value=0.048 Score=48.35 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-|+..+++..+.+ ++.+|+|+|||.|+-+|+-.|.+ .|. ++|++++|.
T Consensus 3 ~G~~~~l~~~~~~-~~~~vlIlGaGGaarai~~aL~~-----~g~------~~I~I~nR~ 50 (167)
T d1npya1 3 IAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKN-----SGF------EKLKIYARN 50 (167)
T ss_dssp HHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHH-----TTC------CCEEEECSC
T ss_pred HHHHHHHHHcCCC-CCCeEEEECCCHHHHHHHHHHHH-----CCC------CEEEEeccc
Confidence 3678899999888 78999999999998888766644 375 789998773
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.45 E-value=0.05 Score=47.19 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=61.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc---------hhhccccCCCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---------KPWAHEHEPVNN 396 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k---------~~fa~~~~~~~~ 396 (585)
.||.|+|||..|.++|..|.+. | .+++++|+..--. +.+.... ........-..+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-----G-------~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-----G-------QSVLAWDIDAQRI----KEIQDRGAIIAEGPGLAGTAHPDLLTSD 65 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSCHHHH----HHHHHHTSEEEESSSCCEEECCSEEESC
T ss_pred CEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEECCHHHH----HHHHHcCCCchhhhhhhhhhhhhhhhhh
Confidence 5899999999999999998763 6 3688888742100 0010000 000000011247
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 397 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
+.|+++. .|++|=+.. . -..+++++.++.+- +.-+|+..+|...
T Consensus 66 ~~e~~~~--aD~iii~v~-~-~~~~~~~~~i~~~l~~~~~iv~~~g~~~ 110 (184)
T d1bg6a2 66 IGLAVKD--ADVILIVVP-A-IHHASIAANIASYISEGQLIILNPGATG 110 (184)
T ss_dssp HHHHHTT--CSEEEECSC-G-GGHHHHHHHHGGGCCTTCEEEESSCCSS
T ss_pred hHhHhcC--CCEEEEEEc-h-hHHHHHHHHhhhccCCCCEEEEeCCCCc
Confidence 9999997 888884432 2 35899999998763 3456666777654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.44 E-value=0.045 Score=47.41 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=63.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC--CCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~--~~L~e~v~~v 404 (585)
||.|+|||.-|..+|.+|.. .|+ ...+.|+|.+-=.......++. +...+....... .+..|+.++
T Consensus 2 KI~IIGaG~VG~~la~~l~~-----~~l-----~~el~L~Di~~~~~~~~~~d~~-~~~~~~~~~~~i~~~~~~~~~~d- 69 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAE-----KQL-----ARELVLLDVVEGIPQGKALDMY-ESGPVGLFDTKVTGSNDYADTAN- 69 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSSSHHHHHHHHHH-TTHHHHTCCCEEEEESCGGGGTT-
T ss_pred EEEEECcCHHHHHHHHHHHh-----CCC-----CceEEEeccccccchhhhhhhh-cccchhcccceEEecCCHHHhcC-
Confidence 79999999999998877765 366 2579999964211000000011 111111111111 234466665
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+.. .-+++++.++++|+..|++=.|||.
T Consensus 70 -advvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPv 121 (142)
T d1guza1 70 -SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121 (142)
T ss_dssp -CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSH
T ss_pred -CeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCCh
Confidence 8888755544321 1267888899999999999999997
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=93.15 E-value=0.37 Score=45.98 Aligned_cols=126 Identities=21% Similarity=0.184 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
.||-=+.-.+-.+++..+.+|++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|+... .++.
T Consensus 14 ATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~-----Ga------kvvavsD~~G~i~~~~--Gld~ 80 (255)
T d1bgva1 14 ATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL-----GA------KAVTLSGPDGYIYDPE--GITT 80 (255)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH-----TC------EEEEEEETTEEEECTT--CSCS
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHc-----CC------eEEEEecCCceEecCC--CCCH
Confidence 467667777788899999999999999999999999999999764 64 4567889999998764 3432
Q ss_pred h-chhhcccc--CCCCCHH-------------HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 383 F-KKPWAHEH--EPVNNLL-------------DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 383 ~-k~~fa~~~--~~~~~L~-------------e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
. ...|..+. ....++. +.+=.++.||||=+. .++..|++-++.+.+.+ .=+|.--+| |+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiliPcA-~~~~I~~~~a~~l~a~~-ck~I~EgAN~p~ 156 (255)
T d1bgva1 81 EEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCA-TQNDVDLEQAKKIVANN-VKYYIEVANMPT 156 (255)
T ss_dssp HHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGGGSCCSEEECCS-CTTCBCHHHHHHHHHTT-CCEEECCSSSCB
T ss_pred HHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcccccccEEeecc-ccccccHHHHHhhhhcC-ceEEecCCCCCc
Confidence 1 11221100 0000111 112246899999654 46799999999885421 247888888 76
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.11 Score=45.52 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=64.2
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 327 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
||.|+| ||.-|..+|-+|... .|+ -..+.|+|.+... .+..-+|.+.....-...-...+..+++++
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~----~~~-----~~el~L~D~~~~~-~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~-- 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQ----LPS-----GSELSLYDIAPVT-PGVAVDLSHIPTAVKIKGFSGEDATPALEG-- 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH----SCT-----TCEEEEECSSTTH-HHHHHHHHTSCSSCEEEEECSSCCHHHHTT--
T ss_pred EEEEEcCCChHHHHHHHHHHhC----CCC-----CcEEEEecccccc-hhHHHHHHCCccccCCcEEEcCCCccccCC--
Confidence 899999 599998888776542 244 2569999975321 111001221110110111111233466776
Q ss_pred CcEEEeccCCC---C-----C------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 406 PTILIGSSGVG---R-----T------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 406 ptvLIG~S~~~---g-----~------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+++.+ | + .-+++.+.++++++..||+--|||.
T Consensus 70 aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPv 121 (145)
T d2cmda1 70 ADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPV 121 (145)
T ss_dssp CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH
T ss_pred CCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCc
Confidence 89999776654 2 1 2357778888999999999999999
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=92.64 E-value=0.27 Score=44.81 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=66.1
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
|..|.++++.|+|.|..|-.+|+++... |+ +++.+|+.. .. + .... .......+|.|
T Consensus 44 ~~eL~gktvgIiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~----~~-~--~~~~----~~~~~~~~l~~ 100 (193)
T d1mx3a1 44 AARIRGETLGIIGLGRVGQAVALRAKAF-----GF-------NVLFYDPYL----SD-G--VERA----LGLQRVSTLQD 100 (193)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECTTS----CT-T--HHHH----HTCEECSSHHH
T ss_pred ceeeeCceEEEeccccccccceeeeecc-----cc-------ceeeccCcc----cc-c--chhh----hccccccchhh
Confidence 5679999999999999999999988642 65 577788741 11 0 0111 11123468999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++. .|+++=. ...-+.++++.++.|. +..|+.=.|.-.
T Consensus 101 ll~~--sD~i~~~~plt~~T~~li~~~~l~~mk---~~a~lIN~sRG~ 143 (193)
T d1mx3a1 101 LLFH--SDCVTLHCGLNEHNHHLINDFTVKQMR---QGAFLVNTARGG 143 (193)
T ss_dssp HHHH--CSEEEECCCCCTTCTTSBSHHHHTTSC---TTEEEEECSCTT
T ss_pred cccc--CCEEEEeecccccchhhhhHHHHhccC---CCCeEEecCCce
Confidence 9987 8888632 2334799999999995 677888666533
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.046 Score=47.51 Aligned_cols=103 Identities=17% Similarity=0.331 Sum_probs=63.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
||.|+|||.-|..+|-.|+.. |+ .+.+.|+|.+ +.......| +. +-.+|.....-..+..+++++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~-----~l-----~~el~L~Di~~~~~~g~~~D-l~-~~~~~~~~~~~~~~~~~~~~~-- 67 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMK-----GF-----AREMVLIDVDKKRAEGDALD-LI-HGTPFTRRANIYAGDYADLKG-- 67 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHH-HH-HHGGGSCCCEEEECCGGGGTT--
T ss_pred EEEEECcCHHHHHHHHHHHhC-----CC-----CCEEEEEecccccccchhcc-cc-ccccccccccccCCcHHHhcC--
Confidence 899999999998888777542 65 3579999964 111100001 11 111222111011233456776
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 406 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 406 ptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+.. .-+++++.++++++..+++-.|||.
T Consensus 68 adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPv 119 (140)
T d1a5za1 68 SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV 119 (140)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred CCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcH
Confidence 8988866554421 2356778899999999999999997
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.42 E-value=0.015 Score=52.24 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=65.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC--CCCCH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNL 397 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~--~~~~L 397 (585)
..+++..||.|+|||.-|..+|-.|+. .|+ -..+.|+|.+-=..++...+|.+- ..|..... ...+.
T Consensus 14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~-----~~l-----~~elvL~D~~~~~a~g~alDl~~~-~~~~~~~~~~~~~d~ 82 (159)
T d2ldxa1 14 EDKLSRCKITVVGVGDVGMACAISILL-----KGL-----ADELALVDADTDKLRGEALDLQHG-SLFLSTPKIVFGKDY 82 (159)
T ss_dssp CCCCCCCEEEEECCSHHHHHHHHHHHT-----TTS-----CSEEEEECSCHHHHHHHHHHHHHT-TTTCSCCEEEEESSG
T ss_pred cccCCCCeEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCchhhhccHHHHhCc-chhcCCCeEEeccch
Confidence 456777899999999999999987765 376 357999997511111100012211 11111100 01243
Q ss_pred HHHhcccCCcEEEeccCCC---C-----CC--C----HHHHHHHHcCCCCcEEEecCCCC
Q 007904 398 LDAVKVIKPTILIGSSGVG---R-----TF--T----KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~---g-----~F--t----~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+.+++ .|++|=+.+.+ | +| + +++++.+++++...||+-.|||.
T Consensus 83 -~~~~~--adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPv 139 (159)
T d2ldxa1 83 -NVSAN--SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPV 139 (159)
T ss_dssp -GGGTT--EEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSH
T ss_pred -hhhcc--ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcH
Confidence 33444 78887554443 2 22 2 35555677889999999999998
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=92.37 E-value=0.24 Score=45.36 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=67.4
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHH
Q 007904 319 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 398 (585)
Q Consensus 319 ~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~ 398 (585)
.|+.|.++++.|+|.|..|..+|+++.. | |+ +++.+|+.. . +.. ........+|.
T Consensus 37 ~g~el~gk~vgIiG~G~IG~~va~~l~~-f----g~-------~V~~~d~~~----~------~~~---~~~~~~~~~l~ 91 (197)
T d1j4aa1 37 IGREVRDQVVGVVGTGHIGQVFMQIMEG-F----GA-------KVITYDIFR----N------PEL---EKKGYYVDSLD 91 (197)
T ss_dssp CBCCGGGSEEEEECCSHHHHHHHHHHHH-T----TC-------EEEEECSSC----C------HHH---HHTTCBCSCHH
T ss_pred cCccccCCeEEEecccccchhHHHhHhh-h----cc-------cccccCccc----c------ccc---ccceeeecccc
Confidence 3567999999999999999999999954 3 64 577788641 1 110 01111245799
Q ss_pred HHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 399 DAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 399 e~v~~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
|+++. .|+++=. ...-+.|+++.++.|. +..++.-.|.-.
T Consensus 92 ~~l~~--sDii~~~~plt~~T~~li~~~~l~~mk---~~a~lIN~sRG~ 135 (197)
T d1j4aa1 92 DLYKQ--ADVISLHVPDVPANVHMINDESIAKMK---QDVVIVNVSRGP 135 (197)
T ss_dssp HHHHH--CSEEEECSCCCGGGTTCBSHHHHHHSC---TTEEEEECSCGG
T ss_pred ccccc--cccccccCCccccccccccHHHHhhhC---CccEEEecCchh
Confidence 99987 8988844 2334799999999995 677888766543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.32 E-value=0.1 Score=46.02 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=62.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC--CCHHHHhc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 402 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~--~~L~e~v~ 402 (585)
..||.|+|||.-|.-+|-+|.. .++ ..++|+|.+-=..++-..++. |...|....... .+-.+.++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~-----~~l------~el~L~Di~~~~~~g~a~Dl~-~~~~~~~~~~~v~~~~~~~~~~ 70 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQ-----KNL------GDVVLFDIVKNMPHGKALDTS-HTNVMAYSNCKVSGSNTYDDLA 70 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-----TTC------CEEEEECSSSSHHHHHHHHHH-THHHHHTCCCCEEEECCGGGGT
T ss_pred CCeEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeccCCcceeeecchh-hhccccCCCcEEEecccccccC
Confidence 3699999999999888865543 376 349999963211111000121 112222111111 23345666
Q ss_pred ccCCcEEEeccCCC---CCC------------C----HHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---RTF------------T----KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~F------------t----~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ |-- + +++++.++++++..||+-.|||.
T Consensus 71 ~--advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPv 128 (150)
T d1t2da1 71 G--ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPV 128 (150)
T ss_dssp T--CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH
T ss_pred C--CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch
Confidence 6 88888666543 311 1 45666778999999999999997
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=92.17 E-value=0.28 Score=44.11 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=68.2
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
+..|++.++.|+|.|..|..+|+++... |+ +++.+|+... . -...+.. ......+|.|
T Consensus 39 ~~~l~~~~vgiiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~~-----~--~~~~~~~---~~~~~~~l~~ 96 (188)
T d2naca1 39 AYDLEAMHVGTVAAGRIGLAVLRRLAPF-----DV-------HLHYTDRHRL-----P--ESVEKEL---NLTWHATRED 96 (188)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHGGG-----TC-------EEEEECSSCC-----C--HHHHHHH---TCEECSSHHH
T ss_pred ceeccccceeeccccccchhhhhhhhcc-----Cc-------eEEEEeeccc-----c--ccccccc---cccccCCHHH
Confidence 5678999999999999999999988653 54 5888887521 0 0111111 1123468999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 400 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 400 ~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
.++. .|+++=.- ..-+.|+++.++.|. +..++.=.|.-.-
T Consensus 97 ~l~~--sD~v~~~~plt~~T~~li~~~~l~~mk---~ga~lIN~aRG~i 140 (188)
T d2naca1 97 MYPV--CDVVTLNCPLHPETEHMINDETLKLFK---RGAYIVNTARGKL 140 (188)
T ss_dssp HGGG--CSEEEECSCCCTTTTTCBSHHHHTTSC---TTEEEEECSCGGG
T ss_pred HHHh--ccchhhcccccccchhhhHHHHHHhCC---CCCEEEecCchhh
Confidence 9987 99887431 224799999999995 7788887766443
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.12 E-value=0.068 Score=47.45 Aligned_cols=46 Identities=26% Similarity=0.445 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
.|++.+++-.+.++++.+++|+|||.++-+|+ .++. +. ++|++++|
T Consensus 3 ~G~~~~l~~~~~~~~~k~vlIlGaGG~arai~----~aL~---~~------~~i~I~nR 48 (177)
T d1nvta1 3 IGARMALEEEIGRVKDKNIVIYGAGGAARAVA----FELA---KD------NNIIIANR 48 (177)
T ss_dssp HHHHHHHHHHHCCCCSCEEEEECCSHHHHHHH----HHHT---SS------SEEEEECS
T ss_pred HHHHHHHHHhCCCcCCCEEEEECCcHHHHHHH----HHHc---cc------cceeeehh
Confidence 58899999999999999999999997766554 4432 22 47998887
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.059 Score=43.15 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=30.3
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.++++||+|+|+|-.|.++|+.|.. .| .+++++|.+
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~-----~g-------~~v~~~D~~ 37 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLA-----RG-------VTPRVMDTR 37 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHH-----TT-------CCCEEEESS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHH-----CC-------CEEEEeeCC
Confidence 5789999999999999999998876 36 468888874
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=91.74 E-value=0.25 Score=46.59 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHh--CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 304 TASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 304 TaaV~lAgll~A~r~~--g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
||-=+..++.++++.. +.+|++.||+|-|-|..|..+|++|.+. |. +++.+|-+ .+.+.
T Consensus 16 Tg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~-----Ga-------kvv~~d~~-------~~~~~ 76 (230)
T d1leha1 16 TAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-----GA-------KLVVTDVN-------KAAVS 76 (230)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC-------HHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEeeccc-------HHHHH
Confidence 3333445566666654 4679999999999999999999998763 63 56666542 11122
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC-CCCCcCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTSQSE 447 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS-NPt~~~E 447 (585)
..+..+-. ..-+. +.+-.++.|||+=++. ++++|++.+..+ .-.||.--+ ||...+|
T Consensus 77 ~~~~~~g~---~~~~~-~~~~~~~cDIl~PcA~-~~~I~~~~~~~l----~ak~Ive~ANn~~t~~e 134 (230)
T d1leha1 77 AAVAEEGA---DAVAP-NAIYGVTCDIFAPCAL-GAVLNDFTIPQL----KAKVIAGSADNQLKDPR 134 (230)
T ss_dssp HHHHHHCC---EECCG-GGTTTCCCSEEEECSC-SCCBSTTHHHHC----CCSEECCSCSCCBSSHH
T ss_pred HHHHhcCC---cccCC-cccccccccEeccccc-ccccChHHhhcc----CccEEEecccCCCCCch
Confidence 22222211 11223 3344678999997766 779999999998 457999999 7774343
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=91.72 E-value=0.62 Score=42.29 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=73.1
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
|..|.+++|.|+|.|..|..+|+++... |+ +++.+|+... ... ...+ ...+|.|
T Consensus 40 ~~~l~~ktvgIiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~~----~~~-----~~~~-----~~~~l~~ 93 (199)
T d1dxya1 40 GKELGQQTVGVMGTGHIGQVAIKLFKGF-----GA-------KVIAYDPYPM----KGD-----HPDF-----DYVSLED 93 (199)
T ss_dssp CCCGGGSEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSCC----SSC-----CTTC-----EECCHHH
T ss_pred cccccceeeeeeeccccccccccccccc-----ce-------eeeccCCccc----hhh-----hcch-----hHHHHHH
Confidence 5779999999999999999999999643 65 6888887421 100 0001 1247889
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh-cc-ccCcEE
Q 007904 400 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAI 462 (585)
Q Consensus 400 ~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~-~w-t~Grai 462 (585)
.++. .|+++=.. ..-+.|+++.++.|. +..++.=.|. .|+--|+|+ ++ ..|+.-
T Consensus 94 l~~~--~D~v~~~~plt~~T~~li~~~~l~~mk---~~a~lIN~aR----G~vvde~aL~~aL~~g~i~ 153 (199)
T d1dxya1 94 LFKQ--SDVIDLHVPGIEQNTHIINEAAFNLMK---PGAIVINTAR----PNLIDTQAMLSNLKSGKLA 153 (199)
T ss_dssp HHHH--CSEEEECCCCCGGGTTSBCHHHHHHSC---TTEEEEECSC----TTSBCHHHHHHHHHTTSEE
T ss_pred HHHh--cccceeeecccccccccccHHHhhccC---CceEEEeccc----HhhhhhHHHHHHHhcCCcc
Confidence 9887 88887542 223689999999995 7778886664 445544443 22 356543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=91.71 E-value=0.14 Score=45.15 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 312 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 312 ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
.+.|++-.++.-.+.+|+|+|||..|...+.+... .|. ++|+.+|+
T Consensus 16 a~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~-----~Ga------~~Vi~~~~ 61 (182)
T d1vj0a2 16 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARS-----LGA------ENVIVIAG 61 (182)
T ss_dssp HHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHH-----TTB------SEEEEEES
T ss_pred HHHHHHHHhCCCCCCEEEEECCCccchhheecccc-----ccc------cccccccc
Confidence 34455444444467899999999776555544432 364 68998887
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.63 E-value=0.073 Score=46.57 Aligned_cols=107 Identities=17% Similarity=0.266 Sum_probs=64.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC-CCHHHHhc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVK 402 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~-~~L~e~v~ 402 (585)
...||.|+|||.-|..+|-.|+.. |+ ..++.|+|.+-=...+..-+|.+. ..|....... .+-.+.++
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~-----~l-----~~el~L~Di~~~~~~g~a~Dl~~~-~~~~~~~~~~~~~d~~~l~ 73 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQ-----GI-----ADEIVLIDANESKAIGDAMDFNHG-KVFAPKPVDIWHGDYDDCR 73 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHHH-TTSSSSCCEEEECCGGGTT
T ss_pred CCCeEEEECcCHHHHHHHHHHHhc-----CC-----CceEEEEeeccccccchhccHhhC-ccccCCCeEEEECCHHHhc
Confidence 456999999999999999888653 66 257999996410000000012211 1121111001 12235566
Q ss_pred ccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ +|++|=+.+.+.- .-+++++.++++++.-+|.-.|||.
T Consensus 74 d--aDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPv 126 (148)
T d1ldna1 74 D--ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV 126 (148)
T ss_dssp T--CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred c--ceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcc
Confidence 5 8888744443321 2256788899999999999999998
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=91.50 E-value=0.38 Score=43.61 Aligned_cols=129 Identities=14% Similarity=0.182 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 304 TASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 304 TaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
||=-+++-+|+.+|. .|..+++.++.|+|.|..|..+|+++... |+ +
T Consensus 5 vAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~f-----g~-------~ 72 (191)
T d1gdha1 5 TAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGF-----DM-------D 72 (191)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------E
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhh-----cc-------c
Confidence 455567777776663 24567789999999999999999988643 54 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
+..+|+... . -....... .....+|.|+++. .|+++=. ...-+.|+++.++.|. +..++.=
T Consensus 73 v~~~d~~~~------~-~~~~~~~~---~~~~~~l~~ll~~--sD~v~l~~plt~~T~~li~~~~l~~mk---~~a~lIN 137 (191)
T d1gdha1 73 IDYFDTHRA------S-SSDEASYQ---ATFHDSLDSLLSV--SQFFSLNAPSTPETRYFFNKATIKSLP---QGAIVVN 137 (191)
T ss_dssp EEEECSSCC------C-HHHHHHHT---CEECSSHHHHHHH--CSEEEECCCCCTTTTTCBSHHHHTTSC---TTEEEEE
T ss_pred ccccccccc------c-cchhhccc---ccccCCHHHHHhh--CCeEEecCCCCchHhheecHHHhhCcC---CccEEEe
Confidence 677776311 0 01111111 1123579999987 8988632 2234799999999996 6777776
Q ss_pred cCCCCCcCCCCHHHHh-c-cccCcEEE
Q 007904 439 LSNPTSQSECTAEEAY-T-WSKGRAIF 463 (585)
Q Consensus 439 LSNPt~~~E~tpeda~-~-wt~Grai~ 463 (585)
.|. .|+-=|+|+ + ...|+.-.
T Consensus 138 ~sR----G~ivde~aL~~aL~~g~i~~ 160 (191)
T d1gdha1 138 TAR----GDLVDNELVVAALEAGRLAY 160 (191)
T ss_dssp CSC----GGGBCHHHHHHHHHHTSEEE
T ss_pred cCC----ccchhhHHHHHHHHcCCceE
Confidence 654 444444443 2 13566543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.45 E-value=0.56 Score=40.91 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~ 390 (585)
..+.|+.-.++.-..++|+|+|+|..|+-.+.++... |. ++++.+|++ +.+..++++
T Consensus 15 Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~-----g~------~~v~~~~~~------------~~k~~~a~~ 71 (174)
T d1f8fa2 15 TGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVC-----GA------SIIIAVDIV------------ESRLELAKQ 71 (174)
T ss_dssp HHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHH-----TC------SEEEEEESC------------HHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhccccc-----cc------ceeeeeccH------------HHHHHHHHH
Confidence 3345544445555688999999998887777555432 64 678888763 122333322
Q ss_pred -------cCCCCCHHHHhccc---CCcEEEeccCCC
Q 007904 391 -------HEPVNNLLDAVKVI---KPTILIGSSGVG 416 (585)
Q Consensus 391 -------~~~~~~L~e~v~~v---kptvLIG~S~~~ 416 (585)
.....++.|.|+.. ++|+.|=+++.+
T Consensus 72 ~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~ 107 (174)
T d1f8fa2 72 LGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP 107 (174)
T ss_dssp HTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred cCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence 11224566666543 468888777743
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=91.36 E-value=0.087 Score=46.14 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=62.3
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC---cccCCCccCCchhchhhccccC-CCCCHHHHh
Q 007904 327 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG---LIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAV 401 (585)
Q Consensus 327 riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G---Li~~~r~~~l~~~k~~fa~~~~-~~~~L~e~v 401 (585)
||.|+| ||.-|..+|-+|.. .|+. ..+.|+|... ...-...| |.+ -..|..... ...+.++ +
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~-----~~l~-----~el~L~Di~~~~~~~~g~a~D-l~~-~~~~~~~~~i~~~~~~~-~ 68 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIAL-----RDIA-----DEVVFVDIPDKEDDTVGQAAD-TNH-GIAYDSNTRVRQGGYED-T 68 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TTCC-----SEEEEECCGGGHHHHHHHHHH-HHH-HHTTTCCCEEEECCGGG-G
T ss_pred eEEEECCCCcHHHHHHHHHHh-----CCCC-----CEEEEEecCCcccccceeecc-hhh-cccccCCceEeeCCHHH-h
Confidence 899999 69999999888865 3763 5799999521 11000001 221 112211100 1134433 4
Q ss_pred cccCCcEEE---eccCCCCC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 402 KVIKPTILI---GSSGVGRT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 402 ~~vkptvLI---G~S~~~g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ ..|++| |.+..+|- .=+++++.+++++...|+.-.|||.
T Consensus 69 ~--~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPv 122 (142)
T d1o6za1 69 A--GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV 122 (142)
T ss_dssp T--TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSH
T ss_pred h--hcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChH
Confidence 4 499998 55555552 1146777888999999999999998
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.25 E-value=0.13 Score=45.53 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh
Q 007904 307 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 386 (585)
Q Consensus 307 V~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~ 386 (585)
.+++.-+.|++..+.+. +++|+|+|||..|+-.+.++.. .|. ++|+.+|+. +.+..
T Consensus 11 ~~~~ta~~a~~~a~~~~-g~~VlI~GaG~vGl~~~q~ak~-----~Ga------~~Vi~~d~~------------~~r~~ 66 (174)
T d1jqba2 11 DMMTTGFHGAELADIEM-GSSVVVIGIGAVGLMGIAGAKL-----RGA------GRIIGVGSR------------PICVE 66 (174)
T ss_dssp THHHHHHHHHHHTTCCT-TCCEEEECCSHHHHHHHHHHHT-----TTC------SCEEEECCC------------HHHHH
T ss_pred hHHHHHHHHHHHhCCCC-CCEEEEEcCCcchhhhhhhhhc-----ccc------cccccccch------------hhhHH
Confidence 45666678888876664 6788899999777655444432 364 679988873 23333
Q ss_pred hcccc-------CCCCCHHHHhcc----cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 387 WAHEH-------EPVNNLLDAVKV----IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 387 fa~~~-------~~~~~L~e~v~~----vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+|++. ....++.+.+.. ..+|+.|=+++.+..+ ++.++ +.+..-+-+++.+.+|.
T Consensus 67 ~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~-~~a~~-~~~~~G~iv~~G~~~~~ 132 (174)
T d1jqba2 67 AAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETL-SQAVK-MVKPGGIISNINYHGSG 132 (174)
T ss_dssp HHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTHH-HHHHH-HEEEEEEEEECCCCCSS
T ss_pred HHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHHHH-HHHHH-HHhcCCEEEEEeecCCC
Confidence 43321 111334444433 3478888777755433 22232 33334444444444443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.86 E-value=0.097 Score=44.26 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+|+|||.||+..|..|.++ |+ +++.++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~-----G~------~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEA-----GI------TDLLILEAT 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHT-----TC------CCEEEECSS
T ss_pred CEEEECCcHHHHHHHHHHHhC-----CC------CcEEEEECC
Confidence 699999999999999888663 76 356666654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.80 E-value=0.24 Score=42.71 Aligned_cols=91 Identities=9% Similarity=0.116 Sum_probs=58.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 406 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkp 406 (585)
||.|+|+|..|..+|..|.+ .| .+++.+|++ . +.+...++.-.. ....+..|+++. +
T Consensus 2 kI~iIG~G~mG~~lA~~l~~-----~g-------~~V~~~d~~----~---~~~~~a~~~~~~--~~~~~~~~~~~~--~ 58 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR-----RG-------HYLIGVSRQ----Q---STCEKAVERQLV--DEAGQDLSLLQT--A 58 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TT-------CEEEEECSC----H---HHHHHHHHTTSC--SEEESCGGGGTT--C
T ss_pred EEEEEeecHHHHHHHHHHHH-----CC-------CEEEEEECC----c---hHHHHHHHhhcc--ceeeeecccccc--c
Confidence 79999999999999987754 25 468888874 1 112111111100 011234467765 8
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCC
Q 007904 407 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNP 442 (585)
Q Consensus 407 tvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNP 442 (585)
|++| ++.+.. -++++++.++.+ .+..||.-.++-
T Consensus 59 DiIi-lavp~~-~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 59 KIIF-LCTPIQ-LILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp SEEE-ECSCHH-HHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred cccc-ccCcHh-hhhhhhhhhhhhcccccceeecccc
Confidence 9888 666554 577888888764 678888888764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.79 E-value=1.9 Score=37.62 Aligned_cols=127 Identities=16% Similarity=0.084 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh
Q 007904 308 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 387 (585)
Q Consensus 308 ~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f 387 (585)
+...-+.|+.-.++.-..++|+|+|+|.-|+-.+.++... |. ++|+.+|+. +.+.++
T Consensus 11 a~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~-----G~------~~Vi~~d~~------------~~kl~~ 67 (174)
T d1p0fa2 11 GFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-----GA------SRIIGVGTH------------KDKFPK 67 (174)
T ss_dssp HHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECSC------------GGGHHH
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHc-----CC------ceeeccCCh------------HHHHHH
Confidence 3444455554344444567999999997775555444332 64 789999873 223334
Q ss_pred ccc---------cCCCCCHHHHhccc---CCcEEEeccCCCCCCCHHHHHHHHcCCCCc----EEEecCCCCCcCCCCHH
Q 007904 388 AHE---------HEPVNNLLDAVKVI---KPTILIGSSGVGRTFTKEVIEAMASFNEKP----LILALSNPTSQSECTAE 451 (585)
Q Consensus 388 a~~---------~~~~~~L~e~v~~v---kptvLIG~S~~~g~Ft~evi~~Ma~~~erP----IIFaLSNPt~~~E~tpe 451 (585)
|++ ......+.++.+.. +.|+.|=+++ .++.++.......+| +++-+.+|....+..|.
T Consensus 68 a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g-----~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~ 142 (174)
T d1p0fa2 68 AIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG-----RIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPL 142 (174)
T ss_dssp HHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTH
T ss_pred HHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC-----CchHHHHHHHHHHHhcCceEEEEEecCccccccCHH
Confidence 332 11112344444432 4677776655 234444444444444 44455555544444554
Q ss_pred HHhccccCcEEEec
Q 007904 452 EAYTWSKGRAIFAS 465 (585)
Q Consensus 452 da~~wt~Grai~As 465 (585)
..+ .++-|..|
T Consensus 143 ~~~---~~~~i~Gs 153 (174)
T d1p0fa2 143 LLL---TGRSLKGS 153 (174)
T ss_dssp HHH---TTCEEEEC
T ss_pred HHh---CCCEEEEE
Confidence 433 34555433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.69 E-value=1.6 Score=37.13 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
+|..+.|++..+.+. +++++|+|+|..|...+.++. + .| .+++.+|++ +.+..+|
T Consensus 12 la~a~~a~~~~~~~~-g~~vlV~G~G~vG~~~~~~ak-~----~G-------a~vi~v~~~------------~~r~~~a 66 (170)
T d1e3ja2 12 LSVGVHACRRAGVQL-GTTVLVIGAGPIGLVSVLAAK-A----YG-------AFVVCTARS------------PRRLEVA 66 (170)
T ss_dssp HHHHHHHHHHHTCCT-TCEEEEECCSHHHHHHHHHHH-H----TT-------CEEEEEESC------------HHHHHHH
T ss_pred HHHHHHHHHHhCCCC-CCEEEEEcccccchhhHhhHh-h----hc-------ccccccchH------------HHHHHHH
Confidence 556678888877654 568888999988776654443 2 36 268888763 2233333
Q ss_pred cc---------cCCCCCHHHHhcc------cCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEecCCCCCcCCCCHHH
Q 007904 389 HE---------HEPVNNLLDAVKV------IKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSNPTSQSECTAEE 452 (585)
Q Consensus 389 ~~---------~~~~~~L~e~v~~------vkptvLIG~S~~~g~Ft~evi~~M-a~~~erPIIFaLSNPt~~~E~tped 452 (585)
++ .....+..+.++. -++|+.|=+++.+ +.++.+ ....+.=.|.-+..|....+..+.+
T Consensus 67 ~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~-----~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~ 141 (170)
T d1e3ja2 67 KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNE-----KCITIGINITRTGGTLMLVGMGSQMVTVPLVN 141 (170)
T ss_dssp HHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCH-----HHHHHHHHHSCTTCEEEECSCCSSCCCCCHHH
T ss_pred HHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCCh-----HHHHHHHHHHhcCCceEEEecCCCCCCcCHHH
Confidence 21 1112334433332 3589999888743 333322 1112333444455555445566655
Q ss_pred Hh
Q 007904 453 AY 454 (585)
Q Consensus 453 a~ 454 (585)
.+
T Consensus 142 ~~ 143 (170)
T d1e3ja2 142 AC 143 (170)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.097 Score=48.52 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=33.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 27 kL~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVGLGGLGCAASQYLASA-----GV------GNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCc
Confidence 58999999999999999999999876 87 899999976
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=90.24 E-value=0.11 Score=46.84 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=65.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch----hhccccC---------
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK----PWAHEHE--------- 392 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~----~fa~~~~--------- 392 (585)
+||.|+|||..|.|||-+++.+ |. +++++|.+- +.+..... .+.+...
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~-----G~-------~V~l~D~~~-------~~l~~~~~~i~~~l~~~~~~~~~~~~~~ 65 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK-----GT-------PILMKDINE-------HGIEQGLAEAAKLLVGRVDKGRMTPAKM 65 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT-----TC-------CEEEECSSH-------HHHHHHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEECCH-------HHHhhhhhhhhhhHHhhhcccccchhhh
Confidence 5799999999999999887763 74 688898741 11111110 1100000
Q ss_pred -------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEec
Q 007904 393 -------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 465 (585)
Q Consensus 393 -------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~As 465 (585)
...+..+.+.. .|.+|=+-.-.=-..+++.+.+.+.+..-.||+=+-++ ....+.-+.+....-|..
T Consensus 66 ~~~~~~i~~~~~~~~~~~--adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~----l~i~~la~~~~~p~r~~g 139 (186)
T d1wdka3 66 AEVLNGIRPTLSYGDFGN--VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST----ISISLLAKALKRPENFVG 139 (186)
T ss_dssp HHHHHHEEEESSSTTGGG--CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS----SCHHHHGGGCSCGGGEEE
T ss_pred hhhhceeecccccccccc--cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc----ccHHHHHHhccCchheEe
Confidence 00111223443 67777633322245677888888888877777644333 334444443332222223
Q ss_pred CCCCCcce
Q 007904 466 GSPFDPFE 473 (585)
Q Consensus 466 GSPf~pv~ 473 (585)
--+|.|+.
T Consensus 140 ~Hf~nP~~ 147 (186)
T d1wdka3 140 MHFFNPVH 147 (186)
T ss_dssp EECCSSTT
T ss_pred eccccCcc
Confidence 33555553
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.08 E-value=0.13 Score=44.88 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=62.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~v 404 (585)
||.|+|||.-|..+|-+|... |+ -..+.|+|.+-=..++..-+|.+....+-... ....+. |.++.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~-----~~-----~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~- 69 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLN-----LD-----VDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKG- 69 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC-----CSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTT-
T ss_pred EEEEECcCHHHHHHHHHHHhc-----Cc-----CceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhcc-
Confidence 899999999999999877653 65 25699999541000000001221111111110 011344 56766
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .=+++.+.+.+++...|++--|||.
T Consensus 70 -adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPv 121 (142)
T d1ojua1 70 -SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121 (142)
T ss_dssp -CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred -ccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCCh
Confidence 88888444432 21 2245778888999999999999997
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.74 E-value=0.26 Score=48.24 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=72.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh-hcccc-------C
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-WAHEH-------E 392 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~-fa~~~-------~ 392 (585)
..|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .++..+.. +.... .
T Consensus 32 ~~L~gktvaIqGfGnVG~~~A~~L~e~-----Ga------kvv~vsD~~G~i~~~~--Gld~~~L~~~~~~~~~~~~~~~ 98 (293)
T d1hwxa1 32 PGFGDKTFAVQGFGNVGLHSMRYLHRF-----GA------KCVAVGESDGSIWNPD--GIDPKELEDFKLQHGTILGFPK 98 (293)
T ss_dssp SSSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEEETTEEECCTT--CCCHHHHHHHHHTTSSSTTCTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEccchhhcccc--ccchHHHHHHHHHcCCeecccc
Confidence 579999999999999999999999763 64 5567889999998764 34322211 11100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007904 393 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 444 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~ 444 (585)
..-+- +.+-..+.||||=++. ++..|++.++.+ .-.+|.--+| |++
T Consensus 99 ~~~~~-~~~~~~~~DIliPaA~-~~~I~~~~a~~l----~ak~I~EgAN~P~t 145 (293)
T d1hwxa1 99 AKIYE-GSILEVDCDILIPAAS-EKQLTKSNAPRV----KAKIIAEGANGPTT 145 (293)
T ss_dssp SCBCC-SCGGGCCCSEEEECSS-SSCBCTTTGGGC----CCSEEECCSSSCBC
T ss_pred cccCC-cccccCCccEEeeccc-cccccHHHHHHH----hhCEEeccCCCCCC
Confidence 00011 2234568999997765 679999988877 4569999998 764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.15 E-value=0.24 Score=41.16 Aligned_cols=97 Identities=14% Similarity=0.203 Sum_probs=52.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc-hhhccccCCCCCHHHH-hcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHEPVNNLLDA-VKV 403 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-~~fa~~~~~~~~L~e~-v~~ 403 (585)
.||+|+|+|..|..+|+.|.+ .| .+++++|.+ ..+-+.+...- ..+.-+......|.++ +++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~-----~g-------~~vvvid~d----~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~ 64 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHR-----MG-------HEVLAVDIN----EEKVNAYASYATHAVIANATEENELLSLGIRN 64 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TT-------CCCEEEESC----HHHHHHTTTTCSEEEECCTTCTTHHHHHTGGG
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CC-------CeEEEecCc----HHHHHHHHHhCCcceeeecccchhhhccCCcc
Confidence 379999999999999999976 36 468888875 11101111110 0111122223346555 444
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++|-+.+... =+--++...++....|-|++.+|
T Consensus 65 --a~~vi~~~~~~~-~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 65 --FEYVIVAIGANI-QASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp --CSEEEECCCSCH-HHHHHHHHHHHHTTCSEEEEECC
T ss_pred --ccEEEEEcCchH-HhHHHHHHHHHHcCCCcEEeecc
Confidence 887776554321 01122333345556666777665
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.97 E-value=0.75 Score=41.20 Aligned_cols=95 Identities=17% Similarity=0.281 Sum_probs=67.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 401 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 401 (585)
.|.++++.|+|.|..|-.+|+++... |+ +++.+|+.. + + - . + ....+|.|++
T Consensus 39 ~l~gk~vgIiG~G~IG~~va~~l~~~-----g~-------~v~~~d~~~-----~-~-~-~----~----~~~~~l~ell 90 (181)
T d1qp8a1 39 LIQGEKVAVLGLGEIGTRVGKILAAL-----GA-------QVRGFSRTP-----K-E-G-P----W----RFTNSLEEAL 90 (181)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHT-----TC-------EEEEECSSC-----C-C-S-S----S----CCBSCSHHHH
T ss_pred cccCceEEEeccccccccceeeeecc-----cc-------ccccccccc-----c-c-c-c----e----eeeechhhhh
Confidence 38899999999999999999988753 64 688888741 1 1 0 0 1 1124799999
Q ss_pred cccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHH
Q 007904 402 KVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 453 (585)
Q Consensus 402 ~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda 453 (585)
+. .|+++-.- ..-+.|+++.++.|. +..|+.=.| +.|+--|+|
T Consensus 91 ~~--sDiv~~~~pl~~~t~~li~~~~l~~mk---~~ailIN~~----RG~ivd~~a 137 (181)
T d1qp8a1 91 RE--ARAAVCALPLNKHTRGLVKYQHLALMA---EDAVFVNVG----RAEVLDRDG 137 (181)
T ss_dssp TT--CSEEEECCCCSTTTTTCBCHHHHTTSC---TTCEEEECS----CGGGBCHHH
T ss_pred hc--cchhhcccccccccccccccceeeecc---ccceEEecc----ccccccchh
Confidence 87 99998643 223799999999995 677888766 455544444
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=88.94 E-value=0.17 Score=45.09 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=66.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhcccc--CCCCCHH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH--EPVNNLL 398 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~ 398 (585)
.+...||.|+|||.-|..+|-.|+. .|+ ...+.|+|.+ .+. ++...+|.+ -..|.+.. ....+.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~-----~~l-----~~ElvLiD~~~~~a-~g~alDl~h-~~~~~~~~~~~~~~d~- 83 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILG-----KSL-----ADELALVDVLEDKL-KGEMMDLQH-GSLFLQTPKIVADKDY- 83 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSCHHHH-HHHHHHHHH-TGGGCCCSEEEECSSG-
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHh-----cCC-----CcEEEEEEeccchh-HHHHHHHhc-cccccCCCeEEeccch-
Confidence 3566799999999999999988865 376 3569999974 111 110001221 11222211 112344
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 399 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+.+++ .|++|=+.+.+ |- .=+++++.+++++...||.-.|||.
T Consensus 84 ~~~~~--adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPv 140 (160)
T d1i0za1 84 SVTAN--SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPV 140 (160)
T ss_dssp GGGTT--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred hhccc--ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCch
Confidence 44555 88777554433 21 2246678888999999999999998
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=88.55 E-value=0.22 Score=43.84 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
+.+||+|+|||.+|+..|-.|.+ .|. ++.++|++.+
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~-----~G~-------~V~vier~~~ 40 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILAR-----KGY-------SVHILARDLP 40 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESSCT
T ss_pred CCCcEEEECccHHHHHHHHHHHH-----CCC-------CEEEEeCCCC
Confidence 45799999999999999998865 363 6899998643
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=88.17 E-value=0.56 Score=42.21 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++--++..+.+++.++++|+|.+. -|.-+|.||.. .| ..++.++++.
T Consensus 15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~-----~g-------atVt~~h~~t----------- 71 (166)
T d1b0aa1 15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL-----AG-------CTTTVTHRFT----------- 71 (166)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT-----TT-------CEEEEECSSC-----------
T ss_pred CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHH-----hh-------cccccccccc-----------
Confidence 445678889999999999999999999999987 78888777754 25 3477776531
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
.+|.+-+++ +|++|-..+.++.+++++++
T Consensus 72 -------------~~l~~~~~~--ADivI~a~G~p~~i~~~~vk 100 (166)
T d1b0aa1 72 -------------KNLRHHVEN--ADLLIVAVGKPGFIPGDWIK 100 (166)
T ss_dssp -------------SCHHHHHHH--CSEEEECSCCTTCBCTTTSC
T ss_pred -------------chhHHHHhh--hhHhhhhccCcccccccccC
Confidence 246666776 99999999999999998886
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.75 E-value=0.24 Score=42.60 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=29.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
..||+|+|||.||+-.|..|.+. |+ +.+.++|+...
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~-----G~------~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARL-----GY------SDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHT-----TC------CCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHC-----CC------CeEEEEEecCc
Confidence 47999999999999999888763 76 45778888643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.55 E-value=1.1 Score=39.96 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=72.2
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
+..+.+.++.|+|.|..|..+|+++... | -+++.+|+.. .. ...+. + .-...+|.|
T Consensus 39 ~~~l~~k~vgiiG~G~IG~~va~~~~~f-----g-------~~v~~~d~~~----~~----~~~~~-~---~~~~~~l~e 94 (184)
T d1ygya1 39 GTEIFGKTVGVVGLGRIGQLVAQRIAAF-----G-------AYVVAYDPYV----SP----ARAAQ-L---GIELLSLDD 94 (184)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHTT-----T-------CEEEEECTTS----CH----HHHHH-H---TCEECCHHH
T ss_pred cccccceeeeeccccchhHHHHHHhhhc-----c-------ceEEeecCCC----Ch----hHHhh-c---CceeccHHH
Confidence 5568899999999999999999987542 5 3688888741 10 01111 1 112357999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh-cc-ccCcEEEe
Q 007904 400 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFA 464 (585)
Q Consensus 400 ~v~~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~-~w-t~Grai~A 464 (585)
+++. .|+++=. ...-++|+++.++.|. +..++.=.|. .|+--|+|+ ++ ..|+.-.|
T Consensus 95 ll~~--sDiv~~~~Plt~~T~~lin~~~l~~mk---~~a~lIN~sR----G~iVde~aL~~aL~~~~i~~a 156 (184)
T d1ygya1 95 LLAR--ADFISVHLPKTPETAGLIDKEALAKTK---PGVIIVNAAR----GGLVDEAALADAITGGHVRAA 156 (184)
T ss_dssp HHHH--CSEEEECCCCSTTTTTCBCHHHHTTSC---TTEEEEECSC----TTSBCHHHHHHHHHTSSEEEE
T ss_pred HHhh--CCEEEEcCCCCchhhhhhhHHHHhhhC---CCceEEEecc----hhhhhhHHHHHHHhcCcEeEE
Confidence 9987 8998743 2334799999999995 5667776554 444444333 22 45554433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.39 E-value=2.8 Score=36.59 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 307 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 307 V~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++...-++|+...++.-....|+|+|+|.-|+..+..+.. .|. ++|+.+|.+
T Consensus 12 Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~-----~G~------~~Vi~vd~~ 63 (176)
T d1d1ta2 12 CGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKS-----AGA------SRIIGIDLN 63 (176)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSC
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHH-----cCC------ceEEEecCc
Confidence 3444446666444555567889999999877666555543 364 789999874
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=87.17 E-value=0.26 Score=44.04 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=28.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.-.||+|+|||.||+..|.+|.+ .|+ ++.++|+.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~ 36 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRD-----AGV-------DVDVYERS 36 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEeCC
Confidence 45799999999999999998765 375 68899873
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=86.54 E-value=0.26 Score=42.87 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.||+|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~-----~G~-------~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKI-----HGL-------NVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-----TSC-------EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 589999999999999998865 364 68888864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=85.79 E-value=0.51 Score=39.24 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=28.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
..||||+|||.+|+-+|..|.+. |- ..+|.++|++-
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~-----~~-----~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLA-----DP-----SIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHc-----CC-----CCcEEEEECCC
Confidence 36999999999999998888653 42 24789888763
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.68 E-value=1.1 Score=39.43 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=53.8
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhc
Q 007904 325 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVK 402 (585)
Q Consensus 325 d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~ 402 (585)
-+||+|+|| |-.|..+++.|++. | -++..++++ ..+.....+...++.. +..+..+|.++++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~-----g-------~~V~~~~R~----~~~~~~~~~~~~~~~~gD~~d~~~l~~al~ 66 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA-----G-------YEVTVLVRD----SSRLPSEGPRPAHVVVGDVLQAADVDKTVA 66 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-----T-------CEEEEEESC----GGGSCSSSCCCSEEEESCTTSHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-----c-------CEEEEEEcC----hhhcccccccccccccccccchhhHHHHhc
Confidence 478999996 88999999888752 6 357777663 1110111111111211 2223346888888
Q ss_pred ccCCcEEEeccCCCCCC---------CHHHHHHHHcCCCCcEEE
Q 007904 403 VIKPTILIGSSGVGRTF---------TKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~F---------t~evi~~Ma~~~erPIIF 437 (585)
. .|++|=+.+..+.+ +..++++|.+++-+.+|+
T Consensus 67 ~--~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~ 108 (205)
T d1hdoa_ 67 G--QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVA 108 (205)
T ss_dssp T--CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred C--CCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEE
Confidence 7 78888665543322 335666666555444554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.63 E-value=2.5 Score=37.03 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=52.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC---Ccc---cCCCccCCchhchhhccc-cCCCCCHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK---GLI---VSSRKDSLQHFKKPWAHE-HEPVNNLLD 399 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~---GLi---~~~r~~~l~~~k~~fa~~-~~~~~~L~e 399 (585)
||.|+|||+-|+++|..|.+. | .++++..+. -.+ -..|.. +.++..+... -....++.+
T Consensus 2 kI~ViGaG~~GtalA~~la~~-----g-------~~V~l~~r~~~~~~~~~i~~~~~~--~~~~~~~~~~~i~~~~~~~~ 67 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDN-----G-------NEVRIWGTEFDTEILKSISAGREH--PRLGVKLNGVEIFWPEQLEK 67 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C-------CEEEEECCGGGHHHHHHHHTTCCB--TTTTBCCCSEEEECGGGHHH
T ss_pred EEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEEecccHHHHHHHhhhhhh--hhhcchhccccccccccHHH
Confidence 799999999999999999763 4 456655321 000 011100 0000000000 011247889
Q ss_pred HhcccCCcEEE-eccCCCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 400 AVKVIKPTILI-GSSGVGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 400 ~v~~vkptvLI-G~S~~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
+++. .|++| ++.+ ...+++++.+..+.+...|+-+
T Consensus 68 ~~~~--ad~Ii~avps---~~~~~~~~~l~~~l~~~~ii~~ 103 (180)
T d1txga2 68 CLEN--AEVVLLGVST---DGVLPVMSRILPYLKDQYIVLI 103 (180)
T ss_dssp HHTT--CSEEEECSCG---GGHHHHHHHHTTTCCSCEEEEC
T ss_pred HHhc--cchhhcccch---hhhHHHHHhhccccccceeccc
Confidence 9987 78775 3333 4578999988776444433333
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=85.63 E-value=3.6 Score=35.89 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 308 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 308 ~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++..-++|+..+++.-..++|+|+|+|.-|+..+.+... .|. ++|+++|++
T Consensus 12 a~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~-----~Ga------~~Vi~~d~~ 62 (174)
T d1e3ia2 12 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKI-----AGA------SRIIAIDIN 62 (174)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSC
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHH-----hCC------ceeeeeccc
Confidence 444455555444555566899999999888766655543 364 689888873
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.62 E-value=1.9 Score=38.64 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+---+|-.|++--++..|.+|+..+++|+|.+. .|.-+|.||.. .| ..+.+++++.
T Consensus 17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~-----~g-------atVt~~~~~t----------- 73 (170)
T d1a4ia1 17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLW-----NN-------ATVTTCHSKT----------- 73 (170)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHH-----TT-------CEEEEECTTC-----------
T ss_pred CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHh-----cc-------CceEEEeccc-----------
Confidence 445678888899999999999999999999976 78888888865 25 3577777631
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
.+|.+.+++ +|++|-..+.++.+++++++ +.-||+=.
T Consensus 74 -------------~~l~~~~~~--aDivi~a~G~~~~i~~~~vk------~g~iviDv 110 (170)
T d1a4ia1 74 -------------AHLDEEVNK--GDILVVATGQPEMVKGEWIK------PGAIVIDC 110 (170)
T ss_dssp -------------SSHHHHHTT--CSEEEECCCCTTCBCGGGSC------TTCEEEEC
T ss_pred -------------ccHHHHHhh--ccchhhcccccccccccccc------CCCeEecc
Confidence 224445554 99999999999999999987 44455544
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=85.32 E-value=0.44 Score=42.70 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.||+|+|||.||+..|-.|.+. |. ++.++|+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~-----G~-------~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA-----GH-------QVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH-----TC-------EEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEeCC
Confidence 5899999999999999888763 74 68888875
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=84.79 E-value=0.56 Score=40.37 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=61.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC---CCCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~ 402 (585)
.||.|+|||.-|..+|-+|.. .++ ..+.++|.+-=...+-..++.+ -..+...... ..+.+ .++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~-----~~l------~dl~l~D~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~~~d~~-~~~ 68 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAA-----KEL------GDIVLLDIVEGVPQGKALDLYE-ASPIEGFDVRVTGTNNYA-DTA 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----HTC------SEEEEECSSSSHHHHHHHHHHT-THHHHTCCCCEEEESCGG-GGT
T ss_pred CeEEEECCCHHHHHHHHHHHh-----CCc------ceEEEEeeccccchhHHHHhhc-cccccCCCCEEEecCcHH-Hhc
Confidence 489999999999999888764 266 2588999631111110001211 1111111111 13344 355
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~--Ft------------~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+.. .+ ++++..++++++.-|+.-.|||.
T Consensus 69 ~--advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPv 121 (142)
T d1uxja1 69 N--SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121 (142)
T ss_dssp T--CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSH
T ss_pred C--CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCch
Confidence 4 8888856554421 12 57888889999999999999998
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.44 E-value=0.67 Score=38.97 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=54.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc-CCCCCHHHHhcccC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~vk 405 (585)
||.|+|||+-|.-+|..|.++ | .++.++|+.---. ..+........... ....+..+.+..
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~-----G-------~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 63 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQ-----G-------HEVQGWLRVPQPY----CSVNLVETDGSIFNESLTANDPDFLAT-- 63 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSCCSE----EEEEEECTTSCEEEEEEEESCHHHHHT--
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CceEEEEcCHHHh----hhhccccCCccccccccccchhhhhcc--
Confidence 899999999999999988764 6 3577777642111 00110000000000 001234466664
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNP 442 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNP 442 (585)
+|++|= +..+ --++++++.++.+ ++.-+|+.+.|=
T Consensus 64 ~D~iii-~vka-~~~~~~~~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 64 SDLLLV-TLKA-WQVSDAVKSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp CSEEEE-CSCG-GGHHHHHHHHHTTSCTTSCEEEECSS
T ss_pred cceEEE-eecc-cchHHHHHhhccccCcccEEeeccCc
Confidence 898883 3333 3488999988764 344556667773
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.52 E-value=0.3 Score=42.62 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=57.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCC--ccCCchhchhhccccC----CCCCHHH
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--KDSLQHFKKPWAHEHE----PVNNLLD 399 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r--~~~l~~~k~~fa~~~~----~~~~L~e 399 (585)
||.|+|| |.-|..+|-+|+. .|+ -+.+.|+|.+-=+.+.. ..+|.+- ..+..... ...+-.+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~-----~~l-----~~el~L~D~~~~~~~~~g~a~Dl~~~-~~~~~~~~~~~~~~~~d~~ 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAK-----EPF-----MKDLVLIGREHSINKLEGLREDIYDA-LAGTRSDANIYVESDENLR 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-----CTT-----CCEEEEEECGGGHHHHHHHHHHHHHH-HTTSCCCCEEEEEETTCGG
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCc-----ccccccccchhhhHhhhcccccchhc-ccccccCCccccCCcchHH
Confidence 7999997 9999999887764 366 25699999751100000 0001110 00100000 0011235
Q ss_pred HhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.+++ .|++|=+.+.+ |- .-+++++.++++++.-|| -.|||.
T Consensus 71 ~l~~--aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPv 125 (145)
T d1hyea1 71 IIDE--SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPV 125 (145)
T ss_dssp GGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSH
T ss_pred Hhcc--ceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCch
Confidence 5665 89888555443 31 124567778888887665 589998
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=83.48 E-value=5.1 Score=34.17 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 308 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 308 ~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+...-+.|+...++.=..++|+|+|||..|.-.+.++.. .|- .+++.+|++
T Consensus 12 a~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~-----~g~------~~Vi~~~~~ 62 (176)
T d2jhfa2 12 GFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKA-----AGA------ARIIGVDIN 62 (176)
T ss_dssp HHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSC
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHH-----cCC------ceEEeecCc
Confidence 344446676555555567899999999776555555543 243 689988874
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.87 E-value=0.44 Score=45.63 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=28.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+..||+|+|||-+|+.+|..|.+ .| .++.++++..
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k-----~G-------~~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAE-----KG-------HQVHIIDQRD 35 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-----TT-------CEEEEEESSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHh-----CC-------CCEEEEECCC
Confidence 35799999999999999998864 25 4788888863
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.60 E-value=5.4 Score=33.69 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...-+.|+...++--..++|+|.|||..|.-. =++..++ |. ++++.+|++
T Consensus 13 ~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~a-iq~ak~~----G~------~~vi~~~~~ 62 (176)
T d2fzwa2 13 ISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAV-IMGCKVA----GA------SRIIGVDIN 62 (176)
T ss_dssp HHHHHHHHHTTTCCCTTCEEEEECCSHHHHHH-HHHHHHH----TC------SEEEEECSC
T ss_pred HHHHHHHHHHhhCCCCCCEEEEecchhHHHHH-HHHHHHH----hc------CceEEEccc
Confidence 33446666555544467899999998655333 3333332 64 778888773
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.60 E-value=0.58 Score=41.56 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|+|+|||.||+..|-+|.+ .|+ .++.++++.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~-----~Gi------~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQ-----AGI------GKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC------CeEEEEeCC
Confidence 379999999999999988875 376 467777774
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.35 E-value=0.65 Score=40.56 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..||+|+|||-||+..|..|.++ |. ++.++.+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~-----G~-------~V~VlEa~ 37 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSF-----GM-------DVTLLEAR 37 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHT-----TC-------EEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-----CC-------CEEEEeCC
Confidence 46899999999999999998753 74 57777665
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=81.74 E-value=0.59 Score=43.08 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+|+|+|||.+|+.+|..|.+ .|. +++.++|+..
T Consensus 3 dViIIGaGi~G~s~A~~La~-----~G~------~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVT-----RGW------NNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHH-----TTC------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHH-----cCC------CcEEEEeCCC
Confidence 69999999999999988764 375 5799999863
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.80 E-value=0.89 Score=40.36 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+|+|||.||+..|..|.++ |. --++.++|+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~-----~~-----~~~V~v~e~~ 35 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKH-----HS-----RAHVDIYEKQ 35 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----CS-----SCEEEEECSS
T ss_pred eEEEECccHHHHHHHHHHHhc-----CC-----CCeEEEEeCC
Confidence 899999999999999998875 32 1368888875
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=80.60 E-value=0.75 Score=43.89 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|.++..|+|+|||.+|+..|..|.+ .|+ ++.++|+.
T Consensus 3 ~p~~~~dV~IIGAG~sGl~~a~~L~~-----~G~-------~v~i~Ek~ 39 (298)
T d1w4xa1 3 QPPEEVDVLVVGAGFSGLYALYRLRE-----LGR-------SVHVIETA 39 (298)
T ss_dssp CCCSEEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred CCCCCCCEEEECccHHHHHHHHHHHh-----CCC-------CEEEEEcC
Confidence 46778899999999999999998865 476 47888875
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.41 E-value=0.72 Score=38.68 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=25.8
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||+|||.+|+-.|..|.++ | .++.++|++
T Consensus 8 viViGaG~~Gl~~A~~La~~-----G-------~~V~vlE~~ 37 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD-----G-------KKVLHIDKQ 37 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT-----T-------CCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHC-----C-------CCEEEEcCC
Confidence 79999999999999888753 6 468999996
|