Citrus Sinensis ID: 007907

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
Protein Sequence
MLRRSILELSSRRRVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVFSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Secondary Structure (PSIPRED)
cHHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcEEccccccHHHHHHHHHcHHHHEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccccccccccccccccccHHHcccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccEEEccEEEEEEccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHccccccHccccHHHHHccccHHHHccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHEHEEc
Coil and Loop (DISEMBL)
MLRRSILelssrrrvpRQIIAQLPSIISARKEYstasqknvspkpgptgkppesgsnfspiiFGATVVVGVGLIAYQNGYLDQYIDIEkekhssldsskfrkdkndvkddhhvaepvvfshsdeepktSISAVEQAMQsvephkdirqpealsktpvedqphlqdkveltpqdqtvavkekdaaensnksiesrepstsppvssegsvevessesksskekdenvqgtgilsqmsaasekdeqkafpqqsiiiedksenelsnsaespaslldayhlrDKIDEGIDKATEDFINVMEELnngylskdGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSslpeetryhGTETLLQLNQKFDALkgtlrhfslippggggilTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Flexible Loop (DISEMBL)
mlrrsilelssrrrvprqiiAQLPSIISARKEYStasqknvspkpgptgKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEkhssldsskfrkdkndvkddhhvaepvvfshsdeepKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQphlqdkveltpqdqtvavkekdaaensnksiesrepstsppvssegsvevessesksskekdenvqgTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKekyekelrdsrarelmRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Low Complexity Region (SEG)
MlrrsilelssrrrVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRkdkndvkddhhvAEPVVFSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIesrepstsppvssegsvevessesksskekdeNVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAIlekelkrerakaaaTIKSlqekmeeklrmeleqkeNEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKlalgalaledalSRGLPIQKEIDTLYTYLDGIEKdsvldlvlsslPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Disordered region (IsUnstruct)
*********************************************************FSPIIFGATVVVGVGLIAYQNGYLDQYIDI****************************************************************************************************************************************************************************************LDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAA*********************************************************************************************AEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIV*
Disordered Region (DISOPRED)
***************************************************************GATVVVGVGLIAYQNGYLDQYI*************************************************************************************************************************************************************************************************************************************LQ***********************************************************************************************************************NLHINALCMAFYARSEEARKSYFAHKLALGALALEDA*********EIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Disordered Region (DISEMBL)
MLRRSILELSSRRRVPRQIIAQLPSIISAR***********************SGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVF**********ISAVEQAMQSVEPHKDIRQPEA***********LQDKVELTPQDQTVAV************************************************GTGILSQM************PQQSIIIEDKS**********PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME***********LKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Disordered Region (DISPRO)
************RRV*****************************************NFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDS*KFRKDKNDVKDDHHVAE************************************************************************************************************************************************************LD******KIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRRSILELSSRRRVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVFSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFxxxxxxxxxxxxxxxxxxxxxELMRTEEAAILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFFTIVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
255576188	638	conserved hypothetical protein [Ricinus	0.924	0.847	0.522	1e-146
296082466	668	unnamed protein product [Vitis vinifera]	0.936	0.820	0.518	1e-132
224083763	654	predicted protein [Populus trichocarpa]	0.912	0.816	0.506	1e-129
356511121	642	PREDICTED: uncharacterized protein LOC10	0.924	0.842	0.490	1e-127
224096233	623	predicted protein [Populus trichocarpa]	0.876	0.823	0.515	1e-125
359480840	671	PREDICTED: formation of crista junctions	0.909	0.792	0.493	1e-124
356528505	646	PREDICTED: uncharacterized protein LOC10	0.935	0.846	0.473	1e-124
18420505	650	uncharacterized protein [Arabidopsis tha	0.916	0.824	0.492	1e-124
449451629	658	PREDICTED: uncharacterized protein LOC10	0.945	0.840	0.470	1e-123
297797988	657	hypothetical protein ARALYDRAFT_490751 [	0.919	0.818	0.465	1e-120

>gi|255576188|ref|XP_002528988.1| conserved hypothetical protein [Ricinus communis] gi|223531578|gb|EEF33407.1| conserved hypothetical protein [Ricinus communis]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 302/578 (52%), Positives = 405/578 (70%), Gaps = 37/578 (6%)

Query: 23  LPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLD 82
           +PS++S RKE+ST+ Q+N SPK G   KPPES SN   ++ G+ +V G GL+AYQ+GYLD
Sbjct: 6   IPSLLSLRKEFSTSPQQNASPKAGSGSKPPESKSNLPKVVAGSAIVGGAGLLAYQSGYLD 65

Query: 83  QYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVFSHSDEEPKTSISAVEQAMQSVEP 142
           QYI  +++     +S++   D  DVKD     E +  + S+E  K     VEQ  Q V+ 
Sbjct: 66  QYIGKQQQ-----NSARNGIDYKDVKDTQISGEQLASTISEESVKLG-HDVEQTAQKVQT 119

Query: 143 HKDIRQPEALSKTP-------VE---------DQPHLQ--DKVE----LTPQDQTVAVKE 180
             D+ Q E   K         VE         D PH+Q  ++VE    + P +    ++E
Sbjct: 120 EIDLPQFEVQQKVESKVYLPRVETEQKAETHGDLPHVQAEERVEPETDIRPHEAVRDIEE 179

Query: 181 K-DAAENSNKSI-ESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAAS 238
           K D   + + ++ E +    S    ++ S+ +E+SESK + E  E VQ   + +Q++  +
Sbjct: 180 KSDVVNDGSVAVQEKQRQEFSQSTKAKYSLGMENSESKITGETSEGVQVPEVTTQVTVVT 239

Query: 239 EKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDE--GIDKATEDFINVM 296
           ++D  K  P Q +  ED S+  L N  E+ ASLL++YHL+D+ +E    +   E+ +  +
Sbjct: 240 DEDAIKVVPPQQLDTEDGSKAALGNITEA-ASLLESYHLKDRAEESTATEGPGEEALGPV 298

Query: 297 EELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRAREL 356
           EEL++G+++KDGK+V+ FLQAIHAAEQRQAELD  AFAEEKRALKEKYEKEL+D RAREL
Sbjct: 299 EELDDGFVTKDGKLVMSFLQAIHAAEQRQAELDAHAFAEEKRALKEKYEKELKDLRAREL 358

Query: 357 MRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAE 416
           M  EEAA+L+KE+KRERAKAAA I++LQEKMEEKLRMELEQKE+EAE+ +K   ELAKAE
Sbjct: 359 MHAEEAAMLDKEIKRERAKAAAAIRNLQEKMEEKLRMELEQKESEAEANMKRIQELAKAE 418

Query: 417 IAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG 476
           + ++IA EK  QIEKMAEANL+INALCMAFYARSEEAR+ +  HKLALGALALEDALS+G
Sbjct: 419 LTSAIASEKAVQIEKMAEANLNINALCMAFYARSEEARQIHSVHKLALGALALEDALSKG 478

Query: 477 LPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFS 536
           LPIQ+E+D L TY++G +KDS++ LVLS+LPEETRYHGT+TLLQLNQKF+ALKGTLRH+ 
Sbjct: 479 LPIQQELDALNTYMEGTDKDSLIHLVLSTLPEETRYHGTDTLLQLNQKFNALKGTLRHYI 538

Query: 537 LIPPGGGGILTHSLAHIASWLKVHQV----SGLSIIVA 570
           LIPPGGGGIL+H++A +ASWL+  +V     G+  ++A
Sbjct: 539 LIPPGGGGILSHAMAQVASWLRFKEVDPSGDGIESVIA 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082466|emb|CBI21471.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 315/607 (51%), Positives = 393/607 (64%), Gaps = 59/607 (9%)

Query: 1   MLRRSILELSSRR---RVPRQIIAQ-LPSIISARKEYSTASQKNVSPKPGPTGKPPESGS 56
           MLRRS+LE+SSR+   RVPR+I +Q +P   S+RKE+S ASQ+N S   G TGKP  SGS
Sbjct: 1   MLRRSVLEISSRKYYARVPRRITSQQIPPFFSSRKEFSAASQQNTSQGSGSTGKPSNSGS 60

Query: 57  NFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSK------------FRKDK 104
             S  I G  V+    + AYQ GYLDQ   I KE HSS + ++             + ++
Sbjct: 61  FMSKFIVGGVVIGAAVMTAYQTGYLDQI--IVKEPHSSSEPTRTGVVDLGVEVPVLKSEE 118

Query: 105 NDVKDDHHVAEPVVF-SH----SD----------EEPKTSISAVEQAMQSVEPHKDIRQP 149
             V D   V  P    SH    SD          E+P  S S VE      EP  D    
Sbjct: 119 TGVVDSLVVPVPKSGDSHETGVSDLRERAGLPDSEDPNESSSNVE---HKTEPRSDFPHV 175

Query: 150 EALSKTPVEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVE 209
           E L +  V++Q  ++D  +LTP++  V ++EKD     + S  S +  T    SSEG+++
Sbjct: 176 EDLREKKVKNQFPVKDIADLTPEESAVPIQEKDLPPYPHISTASNDQITDSGTSSEGNID 235

Query: 210 VESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPA 269
           ++  E+  S E++  V         +   EK           I +D    +L    E P 
Sbjct: 236 MKDQEAIPSMEQNHGVPTISKTILDNTVPEKSNMDTVG----ITKDGPGKDL----EPPG 287

Query: 270 SLLDAYHLRDKID---------EGI------DKATEDFINVMEELNNGYLSKDGKVVLDF 314
           SL+DAY+L DK D         +GI       K  E  ++ +E+LN  Y+S DGK+VLDF
Sbjct: 288 SLVDAYYLTDKGDQTTAASSNGQGIGGDKHFSKEKEASVSTIEDLNGAYISNDGKLVLDF 347

Query: 315 LQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERA 374
           LQAIHAAE+RQAELD  AF+E+KR +KEKYEKEL+D+R +ELM  EEAA+LEKEL +ERA
Sbjct: 348 LQAIHAAEKRQAELDAHAFSEQKRIMKEKYEKELKDARVKELMYAEEAAMLEKELNQERA 407

Query: 375 KAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAE 434
           K AATIKSLQEK EEKL+ ELEQKE E+E +LK ALELAKAE+AA+IA EK + IEK+AE
Sbjct: 408 KLAATIKSLQEKAEEKLKTELEQKERESELELKKALELAKAELAAAIASEKASHIEKIAE 467

Query: 435 ANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIE 494
           ANLHI+ALCMAFYARSEEAR+++  HKLALGALALEDALS+GLPIQ EI  L+ YLDGI+
Sbjct: 468 ANLHIDALCMAFYARSEEARQTHSVHKLALGALALEDALSKGLPIQTEIVVLHKYLDGID 527

Query: 495 KDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIA 554
           KDS+L LVLSSLPEETR HGT+T+LQLNQKFD LK TLRHFSLIPPGGGGIL HSLA++A
Sbjct: 528 KDSLLALVLSSLPEETRNHGTDTVLQLNQKFDDLKATLRHFSLIPPGGGGILAHSLANVA 587

Query: 555 SWLKVHQ 561
           S LKV Q
Sbjct: 588 SRLKVKQ 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083763|ref|XP_002307114.1| predicted protein [Populus trichocarpa] gi|222856563|gb|EEE94110.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 290/572 (50%), Positives = 378/572 (66%), Gaps = 38/572 (6%)

Query: 22  QLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYL 81
            +P  +S+RKE+ST+ QKN SP  GP  K    GS     + GA +VVG     Y  G+L
Sbjct: 16  HVPLFLSSRKEFSTSFQKNASPNGGPNDKSERRGSLLVKSL-GAVLVVGT---CYYAGWL 71

Query: 82  DQYID-IEKEKHSSLDSSKFRKDKNDVKDDHHVA----EPVVFSHSDEEP------KTSI 130
           D  I+ I+K+K S ++S     D  DVK +  V+    E    SH  EE       ++ +
Sbjct: 72  DPIIELIDKKKQSYVNSGGDGIDHKDVKVEEVVSPMSEEANKLSHFIEEDAQKVKRESDL 131

Query: 131 SAVEQAMQSVEPHKDIRQPEALSKTPVE---DQPHLQ--DKVELT---PQDQTVAVKEKD 182
            +VE   + VE H D+  P   SK  VE   D PH++   K E     P  +T++  E D
Sbjct: 132 PSVETKEEKVEIHADV--PHFESKHKVETPTDLPHVEADQKFETQTDQPHHETLSETESD 189

Query: 183 ---AAENSNKSIESR-EPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAAS 238
                 +   S+E R EP  S    SEGS+ +     K++KE +E +Q T +  Q +   
Sbjct: 190 NQSQVHHGAISVEERHEPEFSHHTGSEGSLGMGIPGLKTTKEPNEGIQVTQVQPQATGVP 249

Query: 239 EKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDK---ATEDFINV 295
            + E K  P Q++  E++SE   S  +   +SLL +YHL D  ++ I       +  ++ 
Sbjct: 250 VESEIKTVPTQNVTTENRSEAAFSEHS-GISSLLGSYHLDDNAEKNITTEGLGEQAIVSA 308

Query: 296 MEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARE 355
           +EELN+G ++KDGK+VLDFL+AIHAAE+RQAELD   F+EEKR LKEKYEKELRDSRARE
Sbjct: 309 IEELNDGCITKDGKLVLDFLEAIHAAEKRQAELDALTFSEEKRVLKEKYEKELRDSRARE 368

Query: 356 LMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKA 415
           LM  EEAA+L+KE+KRE AKAAA IK LQE+MEEKLR+ELEQKENE+E KL+   ELAKA
Sbjct: 369 LMCAEEAAMLDKEIKREIAKAAAAIKMLQERMEEKLRVELEQKENESEMKLQRFQELAKA 428

Query: 416 EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSR 475
           E++ +IA EK A IEK+AEANL+INALCMAFYARSEE+R+ +  HKLALGALALEDALS+
Sbjct: 429 ELSGAIASEKAAHIEKIAEANLNINALCMAFYARSEESRQIHSVHKLALGALALEDALSK 488

Query: 476 GLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQK-----FDALKG 530
           GLPIQ E+D L  YL+GI+KDS+L LVLS+LPEETR+HGT+TLL+LNQK     F+ +KG
Sbjct: 489 GLPIQHELDALNAYLEGIDKDSLLHLVLSTLPEETRHHGTDTLLELNQKASHLLFNVMKG 548

Query: 531 TLRHFSLIPPGGGGILTHSLAHIASWLKVHQV 562
            LRH+ LIPPGG GIL H+LAH+ASWL+  +V
Sbjct: 549 NLRHYILIPPGGDGILAHALAHVASWLRFKEV 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511121|ref|XP_003524278.1| PREDICTED: uncharacterized protein LOC100807909, partial [Glycine max]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 288/587 (49%), Positives = 377/587 (64%), Gaps = 46/587 (7%)

Query: 1   MLRRSILELSSR---RRVPRQII-AQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGS 56
           ++ R IL++SSR   RR PR+ +  Q+P  +S +K +STAS+  VS   G  GKPPES  
Sbjct: 2   LILRYILQISSRPTLRRNPRRFVYQQIPLHLSLQKNFSTASKPGVSSASGSPGKPPESNG 61

Query: 57  NFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEP 116
             S    G+  +    L AYQ GYLDQY+  +KE +S            D+K   H  + 
Sbjct: 62  TLSKFFIGSVALGAAFLAAYQTGYLDQYL--KKEHYSVPQEPHVNATIEDLKSVQHSTDQ 119

Query: 117 VV-----FSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTP 171
           ++     F+H  E P   I+      Q ++ H    QPE +    VEDQ    D  E   
Sbjct: 120 LISPSEKFNH--ENPTVEITE-----QKIDAH--FSQPEIV----VEDQVDKSDIAE--- 163

Query: 172 QDQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGIL 231
            + T A KE    E+   S+ S +PS      S+G + ++S+E+ ++   +E    T   
Sbjct: 164 -EVTAAAKENQLPEHPQSSLTSDDPSKESVAQSDGIIGIQSTETDNAPRLEEG-HHTSTS 221

Query: 232 SQMSAASEKDEQKAF-PQQSIIIE-DKSENELSNSAESPASLLDAYHLRDKIDEG----- 284
           +Q SA  +++  K   P+Q  I E ++ E+ L    E   +LL+ Y LR+K ++      
Sbjct: 222 TQTSAVPDENGMKNIQPEQLEIQETERRESALGKDIEQLPTLLEEYQLRNKSEKSPATYI 281

Query: 285 ----------IDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFA 334
                       +  E     MEEL +GY+S++GK+VLDFLQAIHAAE+RQA+LD R F+
Sbjct: 282 SSHGFTENSHFPEGKEALSGAMEELKDGYISENGKLVLDFLQAIHAAEKRQADLDARVFS 341

Query: 335 EEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME 394
           EEK+ LKEKYEK+L+D+ ARELM  EEAA+L++ELKRERAKA+  I SLQEKMEEKL+ E
Sbjct: 342 EEKKVLKEKYEKKLKDAAARELMLAEEAAMLDRELKRERAKASLAINSLQEKMEEKLKTE 401

Query: 395 LEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEAR 454
           LEQKE EAE KLK A ELAKAE+ A+IA EK AQIEKMAEAN++INALCMAFYARSEEAR
Sbjct: 402 LEQKEIEAELKLKQAQELAKAELNAAIANEKAAQIEKMAEANVNINALCMAFYARSEEAR 461

Query: 455 KSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHG 514
           +S+     AL ALALEDALS+GLPI+ EI +L +YL GI+KDS+LDLVL+SLPEETR +G
Sbjct: 462 QSHATQNFALRALALEDALSKGLPIETEIASLQSYLGGIDKDSILDLVLASLPEETRSNG 521

Query: 515 TETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQ 561
           T+T LQL QKFDALKG++RHFS  PPGGGG+L HSLAH+ASWLKV +
Sbjct: 522 TDTQLQLKQKFDALKGSVRHFSFFPPGGGGMLAHSLAHLASWLKVRE 568

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096233|ref|XP_002310585.1| predicted protein [Populus trichocarpa] gi|222853488|gb|EEE91035.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 292/566 (51%), Positives = 370/566 (65%), Gaps = 53/566 (9%)

Query: 30  RKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYID-IE 88
           RKE+ST  QKN SP      K   +GS  +  + GA +VVG     Y  G+LD +I+ I 
Sbjct: 4   RKEFSTTFQKNASPNGDQNDKSERTGSLLAKGL-GAALVVGT---CYYVGWLDPFIELIG 59

Query: 89  KEKHSSLDSSKFRKDKNDVKDDHHVAEPVVFSHSDEEPKTSISAVEQAMQSVEPHKDIRQ 148
           K+K   ++S     D  DV            S   EE       +E+A Q V+   D+  
Sbjct: 60  KKKQGYVNSGGDGIDHEDV------------SAMSEEANKLSHFIEEAAQKVQSQTDLPN 107

Query: 149 PEALSKTPVE---DQPHLQ--DKVELTPQD----------QTVAVKEKD---AAENSNKS 190
            E   K  VE   D PH++   KVE TP D           T +  E D     ++   S
Sbjct: 108 VET-KKDKVETRIDVPHVETEQKVE-TPSDLPHVETEQKADTFSKTEPDHQYQVDHGTIS 165

Query: 191 IESR-EPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQ 249
           +E R EP  S  + SEGS+ VES E K+++E +E  Q T +  Q +    + E KA   Q
Sbjct: 166 VEERHEPKFSQCIGSEGSLGVESPELKTTEESNEGTQVTEVQPQDATVPVEREIKAVQTQ 225

Query: 250 SIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDF-----INVMEELNNGYL 304
           ++  ED+SE +        +SLLD+YHL D+ ++  + ATE       ++ +EELN GYL
Sbjct: 226 NVTSEDRSEQDAFGEGVGTSSLLDSYHLDDEAEK--NTATEGLGEQAIVSAIEELNEGYL 283

Query: 305 SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAI 364
           +KDGK+V+DFL+AIHAAE+RQA+LD  AFAEEKRALKEKYEKELRD RARELM  E+AAI
Sbjct: 284 TKDGKLVIDFLEAIHAAEKRQADLDALAFAEEKRALKEKYEKELRDLRARELMHVEKAAI 343

Query: 365 LEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIARE 424
           L+KE+KRERAKAAA IK+LQE+MEEKLR+ELEQKENE E KL+   E AKAE+ A+ ARE
Sbjct: 344 LDKEIKRERAKAAAAIKTLQERMEEKLRVELEQKENEVEMKLQKLSEFAKAELLAASARE 403

Query: 425 KVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEID 484
           K AQIEKM EANL+INALCMAFYARSEEAR+ +  HKLALGALALEDAL RGLPIQ+E+D
Sbjct: 404 KAAQIEKMTEANLNINALCMAFYARSEEARQIHSVHKLALGALALEDALYRGLPIQQELD 463

Query: 485 TLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQK--------FDALKGTLRHFS 536
            L TYL+ I+KDS+L LVLS+LPEET++HG +TLL+LNQK        F+ +KG LRH+ 
Sbjct: 464 ALNTYLEAIDKDSLLLLVLSNLPEETKHHGPDTLLELNQKASHLLGPFFNVMKGNLRHYI 523

Query: 537 LIPPGGGGILTHSLAHIASWLKVHQV 562
           LIPPGGGGIL H+LAH+ASWL+  +V
Sbjct: 524 LIPPGGGGILAHALAHVASWLRFKEV 549

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480840|ref|XP_002276780.2| PREDICTED: formation of crista junctions protein 1-like [Vitis vinifera]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 309/626 (49%), Positives = 384/626 (61%), Gaps = 94/626 (15%)

Query: 1   MLRRSILELSSRR---RVPRQIIAQ-----------------------------LPSIIS 28
           MLRRS+LE+SSR+   RVPR+I +Q                             +P   S
Sbjct: 1   MLRRSVLEISSRKYYARVPRRITSQEEFTVWHGFTALGTSLELGFLPHGLVVGTIPPFFS 60

Query: 29  ARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIE 88
           +RKE+S ASQ+N S   G TGKP  SGS  S  I G  V+    + AYQ GYLDQ   I 
Sbjct: 61  SRKEFSAASQQNTSQGSGSTGKPSNSGSFMSKFIVGGVVIGAAVMTAYQTGYLDQI--IV 118

Query: 89  KEKHSSLDSSK------------FRKDKNDVKDDHHVAEPVVF-SH----SD-------- 123
           KE HSS + ++             + ++  V D   V  P    SH    SD        
Sbjct: 119 KEPHSSSEPTRTGVVDLGVEVPVLKSEETGVVDSLVVPVPKSGDSHETGVSDLRERAGLP 178

Query: 124 --EEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEK 181
             E+P  S S VE      EP  D    E L +  V++Q  ++D  +LTP++  V ++EK
Sbjct: 179 DSEDPNESSSNVE---HKTEPRSDFPHVEDLREKKVKNQFPVKDIADLTPEESAVPIQEK 235

Query: 182 DAAENSNKSIESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKD 241
           D     + S  S +  T    SSEG+++++  E+  S E++  V                
Sbjct: 236 DLPPYPHISTASNDQITDSGTSSEGNIDMKDQEAIPSMEQNHGV---------------- 279

Query: 242 EQKAFPQQSIIIEDKSENELSN------SAESPASLLDAYHLRDKIDEGIDKATEDFINV 295
                P  S  I D +  E SN      + + PAS        DK      K  E  ++ 
Sbjct: 280 -----PTISKTILDNTVPEKSNMDTVGITKDGPASSNGQGIGGDK---HFSKEKEASVST 331

Query: 296 MEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARE 355
           +E+LN  Y+S DGK+VLDFLQAIHAAE+RQAELD  AF+E+KR +KEKYEKEL+D+R +E
Sbjct: 332 IEDLNGAYISNDGKLVLDFLQAIHAAEKRQAELDAHAFSEQKRIMKEKYEKELKDARVKE 391

Query: 356 LMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKA 415
           LM  EEAA+LEKEL +ERAK AATIKSLQEK EEKL+ ELEQKE E+E +LK ALELAKA
Sbjct: 392 LMYAEEAAMLEKELNQERAKLAATIKSLQEKAEEKLKTELEQKERESELELKKALELAKA 451

Query: 416 EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSR 475
           E+AA+IA EK + IEK+AEANLHI+ALCMAFYARSEEAR+++  HKLALGALALEDALS+
Sbjct: 452 ELAAAIASEKASHIEKIAEANLHIDALCMAFYARSEEARQTHSVHKLALGALALEDALSK 511

Query: 476 GLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHF 535
           GLPIQ EI  L+ YLDGI+KDS+L LVLSSLPEETR HGT+T+LQLNQKFD LK TLRHF
Sbjct: 512 GLPIQTEIVVLHKYLDGIDKDSLLALVLSSLPEETRNHGTDTVLQLNQKFDDLKATLRHF 571

Query: 536 SLIPPGGGGILTHSLAHIASWLKVHQ 561
           SLIPPGGGGIL HSLA++AS LKV Q
Sbjct: 572 SLIPPGGGGILAHSLANVASRLKVKQ 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528505|ref|XP_003532843.1| PREDICTED: uncharacterized protein LOC100794530, partial [Glycine max]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 277/585 (47%), Positives = 369/585 (63%), Gaps = 38/585 (6%)

Query: 1   MLRRSILELSSR---RRVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSN 57
           ++ RSIL++SSR   +R PR+ + Q+P  +S++K +ST S+   +   G  GKPPES   
Sbjct: 2   LILRSILQISSRPTLKRNPRRFVYQIPLHLSSQKNFSTVSKPGGASASGSPGKPPESNGT 61

Query: 58  FSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPV 117
            S    G+  +    L AYQ  YLDQY+  +KE +S L          D+K   H  + +
Sbjct: 62  LSKFFIGSVALGAAFLAAYQTHYLDQYL--KKEHYSVLQEPHVNATIEDLKSVQHSTDQL 119

Query: 118 V-----FSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQ 172
           +     F+H +         VE   Q ++ H     PE + +  V+    +QDK ++  +
Sbjct: 120 ISPSEKFNHKN-------PTVEITEQKIDAH--FSHPEIVVEDQVDKPIPVQDKSDIA-E 169

Query: 173 DQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILS 232
           D T A KE    E    S+ S +PS      S+G + ++S+E+ +++  +E        +
Sbjct: 170 DVTAAAKENQLPEYPESSLTSDDPSKESVTQSDGIIGIQSTETVNAR-MEEGYHHASTST 228

Query: 233 QMSAASEKDEQKAFPQQSIIIE-DKSENELSNSAESPASLLDAYHLRDKIDEG------- 284
           Q S   E   +   P+Q  I E  + E+ L    E   +LL+ YHLR+K +         
Sbjct: 229 QTSP-DENGMKNIQPEQLEIQEMGRRESALGKDIEQQPTLLEEYHLRNKSERSPATYISS 287

Query: 285 --------IDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEE 336
                     +  E     MEEL +GY+S++GK+VLDFLQAIHAAE+RQA+LD  AF EE
Sbjct: 288 HDFTENSHFPEGKEALNGAMEELKDGYISENGKLVLDFLQAIHAAEKRQADLDAHAFNEE 347

Query: 337 KRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELE 396
           K+ LKEKYEK+L+D+ ARELM  EEAA+L++ELKRERAKA+  IKSLQEKMEEKL+ ELE
Sbjct: 348 KKVLKEKYEKKLKDAAARELMLAEEAAMLDRELKRERAKASLAIKSLQEKMEEKLKTELE 407

Query: 397 QKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS 456
           QKE E + K K   ELAKAE+ A+IA EK AQIEKMAEAN++INALCMAFYARSEEAR+S
Sbjct: 408 QKEIETDLKFKQTQELAKAELNAAIANEKAAQIEKMAEANVNINALCMAFYARSEEARQS 467

Query: 457 YFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTE 516
           +     AL ALALEDALS+GLPI+ EI +L +YL   +KDSVLDLVL+SLPEETR +GT+
Sbjct: 468 HATQNFALRALALEDALSKGLPIETEIASLQSYLGSTDKDSVLDLVLASLPEETRSNGTD 527

Query: 517 TLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQ 561
           T LQL QKFDALKG++RHFS  PPGGGG+L HSLAH+ASWLKV +
Sbjct: 528 TQLQLKQKFDALKGSVRHFSFFPPGGGGMLAHSLAHVASWLKVRE 572

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420505|ref|NP_568066.1| uncharacterized protein [Arabidopsis thaliana] gi|13605659|gb|AAK32823.1|AF361810_1 AT4g39690/T19P19_80 [Arabidopsis thaliana] gi|21700889|gb|AAM70568.1| AT4g39690/T19P19_80 [Arabidopsis thaliana] gi|23397147|gb|AAN31857.1| unknown protein [Arabidopsis thaliana] gi|332661705|gb|AEE87105.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 297/603 (49%), Positives = 373/603 (61%), Gaps = 67/603 (11%)

Query: 1   MLRRSILELSSR---RRVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPES--- 54
           MLR+S+LELSSR   +R PR + AQ   + S+R   ++ S KN  P   P GKP  S   
Sbjct: 1   MLRKSVLELSSRLSIKRFPRNLGAQRFHLSSSRN--ASTSGKNGLPGAKPVGKPDASKVD 58

Query: 55  ----------GSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDK 104
                       N S ++ G   + G  L+AYQ GYLDQY+  E++K S    S    +K
Sbjct: 59  PPKVTPPPPTKGNSSKVVIGGVAIAGAFLVAYQTGYLDQYLGKEQQKLSERIHSDALTEK 118

Query: 105 NDVKDDHHVAEPVVFSHSDE-------EPKTSISAVEQAMQSVEPHKDIR-QPEALSKTP 156
             +++ HH+  P     S E       +P+ + S   + +QS     DI  QPE  S   
Sbjct: 119 --LEEAHHLNVPSGVEDSTEKDGKVETQPQVTHSEASEGVQS-----DIELQPE--SDLS 169

Query: 157 VEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESREPSTSPP------VSSEGSVEV 210
            +   ++    E TPQ+  +     D AE  N  I + E S + P      +S   SV++
Sbjct: 170 SDRFTYISSNQEETPQETVI-----DRAE-INLPISASEDSGAKPDMPSEIISEAESVKL 223

Query: 211 ESSESKSSKEKDENVQGTGIL--SQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESP 268
           E+           N Q + +   S+  +AS KD     P      ED  E E+    + P
Sbjct: 224 EAVPKPGDSPIIVNAQSSSVHRESETESASPKD-----PAALKTPEDGIEREV----QLP 274

Query: 269 ASLLDAYHLR---------DKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIH 319
            SLL  Y+L            I E I K TE F N  E L + Y+++DGK+VLDFL AIH
Sbjct: 275 GSLLKEYNLEGSDTESTGSSSIGEQITKETEAFPNSTEGLKDSYMTEDGKLVLDFLAAIH 334

Query: 320 AAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAAT 379
           AAE++QA LD + FAEE RALKEKYE ELRD RARELMR EEAAIL+KELKRER KAAA 
Sbjct: 335 AAEKQQAHLDAQVFAEELRALKEKYENELRDLRARELMRIEEAAILDKELKRERTKAAAA 394

Query: 380 IKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHI 439
           IK++QE+ME+KL+ ELEQKE EA+  L  A ELAKAE+ ++IA+EK AQIEKMAEA+L+I
Sbjct: 395 IKAIQERMEDKLKAELEQKETEAQLALSKAEELAKAEMISTIAKEKAAQIEKMAEADLNI 454

Query: 440 NALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVL 499
            AL MAFYARSEEAR+S+  HKLALGALAL+D LS+GLP+QKEIDTL TYL+G  KDS+L
Sbjct: 455 KALSMAFYARSEEARQSHSVHKLALGALALDDTLSKGLPVQKEIDTLQTYLEGTHKDSIL 514

Query: 500 DLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKV 559
            LVLSSLPEE R +GT+T+LQLNQKFD LKGTLRHFSLIPPGGGGIL HSLAH+AS LK 
Sbjct: 515 GLVLSSLPEEARSNGTDTVLQLNQKFDTLKGTLRHFSLIPPGGGGILAHSLAHVASSLKF 574

Query: 560 HQV 562
            +V
Sbjct: 575 KEV 577

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451629|ref|XP_004143564.1| PREDICTED: uncharacterized protein LOC101212567 [Cucumis sativus]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 285/606 (47%), Positives = 386/606 (63%), Gaps = 53/606 (8%)

Query: 1   MLRRSILELSSRR---RVPRQIIAQL-----PSIISARKEYSTASQKNVSPKPGPTGKPP 52
           M RRSIL+LSSR+   R PRQ   Q+     P  IS  +E+S+A ++N+  KP PT  PP
Sbjct: 1   MWRRSILKLSSRQSGGRTPRQSSPQVQCWHTPQCISKIREFSSAPKQNL--KPQPTNVPP 58

Query: 53  ESGSNFSPIIFGATVVVGVGLIAYQNGYLDQ-YIDIEKEKHSSLDSSKFRKDKNDVKDDH 111
            SG++   ++FG+ V+      AYQ GYLDQ  +DIE+  +SS++S+K  +     K D 
Sbjct: 59  NSGNSIPKVVFGSVVIGAAVFAAYQAGYLDQRTVDIEQ--NSSVESTKTVQ-----KSDS 111

Query: 112 HVAEPVVFSHSD--------------EEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPV 157
              +P+V    D              EE ++S   VE   Q VE    +   E   K   
Sbjct: 112 DNVQPLVVQKFDLPSSEETEKSNSVREETESSNPIVESTEQKVETDTHLPHLEDWGKE-- 169

Query: 158 EDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVEVESSESKS 217
           +D    +D     P ++   ++E++  E +    +  + +    +S++ ++ ++S+ES +
Sbjct: 170 KDDGQFEDSSRTLPHEK---IEEENLPEFTQSGSQVEDENLGSKISTDENLNMQSAESCT 226

Query: 218 SKEKDENVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSE--NELSNSAESPASLLDAY 275
                + VQ + I S+  A   + + +  PQ+  + E+K +  N+ S     P+SLL+AY
Sbjct: 227 RDWPHDEVQTSPISSKTDAEPAQIDIRIPPQEDTVAEEKLKELNDTSEDTGEPSSLLEAY 286

Query: 276 HLRDKID---------EGIDK---ATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQ 323
           HL+ +           +G DK    TE  I  +EELN+G++SKDGK+V+DFL+AIHAAE+
Sbjct: 287 HLKGEAGMTSLGGGSKDGTDKFYKGTEALIAEIEELNDGFISKDGKLVIDFLEAIHAAEK 346

Query: 324 RQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSL 383
           RQAELD R FA+EK AL  K ++ LRD+R RE M  E+AA+L+KELKRE+ KAAA + SL
Sbjct: 347 RQAELDYRRFADEKTALWNKMDEALRDARVREFMHAEKAAMLDKELKREKTKAAAALMSL 406

Query: 384 QEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALC 443
           QE +E+K + ELEQKENE ESKL+   +LAKAE+AA+IA EK AQIEKMAEANLHINALC
Sbjct: 407 QENLEDKFQKELEQKENELESKLRKLQDLAKAELAAAIASEKAAQIEKMAEANLHINALC 466

Query: 444 MAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVL 503
           MAFYARSEEAR+S+ A KLALGALALEDALSRGLPIQ EI  L   L GI+KDS L+L+L
Sbjct: 467 MAFYARSEEARQSHSAQKLALGALALEDALSRGLPIQAEIKALRVNLQGIDKDSNLELIL 526

Query: 504 SSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQV- 562
           SS+P+E   HG++TLLQ+ QKFDALK  LRH S IPPGGGGIL HSLA +ASW+KV +  
Sbjct: 527 SSIPKEILNHGSDTLLQMTQKFDALKAPLRHLSFIPPGGGGILAHSLARVASWIKVKEAD 586

Query: 563 -SGLSI 567
            SG  I
Sbjct: 587 QSGTGI 592

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797988|ref|XP_002866878.1| hypothetical protein ARALYDRAFT_490751 [Arabidopsis lyrata subsp. lyrata] gi|297312714|gb|EFH43137.1| hypothetical protein ARALYDRAFT_490751 [Arabidopsis lyrata subsp. lyrata]

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 283/608 (46%), Positives = 368/608 (60%), Gaps = 70/608 (11%)

Query: 1   MLRRSILELSSR---RRVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKP------ 51
           MLR+S+LELSSR   +R PR + AQ   + S+R   ++ S KN  P   P GKP      
Sbjct: 1   MLRKSVLELSSRLSIKRFPRNLGAQRFHLSSSRN--ASTSGKNGLPGAKPVGKPYASKVD 58

Query: 52  --------------PESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDS 97
                          ES  N S ++ G   + G  L+AYQ GYLDQY+  E++K S    
Sbjct: 59  PPKVTPPPPPVGKPSESKGNSSKVVIGGVAIAGAFLVAYQTGYLDQYLGKEQQKLSE--- 115

Query: 98  SKFRKD--KNDVKDDHHVAEPVVFSHSDE-------EPKTSISAVEQAMQS---VEPHKD 145
            +   D   N V++ HH+  P     S E       +P+ + S     +QS   V+P  D
Sbjct: 116 -RIHSDAVTNKVEEAHHLNVPSGVEDSTEKDGQVETQPEVTHSEASGGVQSDIEVQPESD 174

Query: 146 IRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEKD--AAENSNKSIESREPSTSPPVS 203
           +        +         ++ E TPQ+  +   E++   +E+ +   +S  PS    +S
Sbjct: 175 LSSDRFTYIS--------SNQGETTPQESVIDRAERNLPISESEDSGFKSDMPSEI--IS 224

Query: 204 SEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSN 263
              +V++E+      K  D  +        +S   E + + A P+     E   E+ +  
Sbjct: 225 EAENVKLEAV----PKPGDSPIVSA---QSISVHRESETESATPKDPSA-EKAPEDGIER 276

Query: 264 SAESPASLLDAYHLRDK---------IDEGIDKATEDFINVMEELNNGYLSKDGKVVLDF 314
             + P SLL  Y+L            I E + K TE   N  E L +GY+++DGK+VLDF
Sbjct: 277 EVQIPGSLLKEYNLEGSDTESTGSPSIGEQLTKETEGLPNSTEGLKDGYMTEDGKLVLDF 336

Query: 315 LQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERA 374
           L AIHAAE++QA LD + FAEE RALKEKYE ELRD RARELMR EEAAIL+KELKRER 
Sbjct: 337 LAAIHAAEKQQAHLDAQVFAEELRALKEKYENELRDLRARELMRIEEAAILDKELKRERT 396

Query: 375 KAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAE 434
           KAAA IK++QE+ME+KL+ E+EQKE EA+  L    ELAKAE+ + IA+EK AQIEKMAE
Sbjct: 397 KAAAAIKAIQERMEDKLKTEIEQKETEAQLALSKVEELAKAEMISEIAKEKAAQIEKMAE 456

Query: 435 ANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIE 494
           A+ +I AL MAFYARSEEAR+S+  HKLALGALAL+D LS+GLPIQKEI+ L TYL+G +
Sbjct: 457 ADSNIKALSMAFYARSEEARQSHSVHKLALGALALDDTLSKGLPIQKEINMLQTYLEGTQ 516

Query: 495 KDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIA 554
           KDS+L LVLSSLPEE R +GT+T+LQLNQKFD LKGTLRHFSLIPPGGGGIL HSLA +A
Sbjct: 517 KDSILGLVLSSLPEEARSNGTDTVLQLNQKFDTLKGTLRHFSLIPPGGGGILAHSLAQVA 576

Query: 555 SWLKVHQV 562
           SWLK  +V
Sbjct: 577 SWLKFKEV 584

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
TAIR|locus:2135267	650	AT4G39690 "AT4G39690" [Arabido	0.904	0.813	0.393	5.6e-84

TAIR|locus:2135267 AT4G39690 "AT4G39690" [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 227/577 (39%), Positives = 290/577 (50%)

Query:    16 PRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKP-------------PESGSNFSPII 62
             PR + AQ   + S+R   ++ S KN  P   P GKP             P +  N S ++
Sbjct:    19 PRNLGAQRFHLSSSRN--ASTSGKNGLPGAKPVGKPDASKVDPPKVTPPPPTKGNSSKVV 76

Query:    63 FGATVVVGVGLIAYQNGYLDQYIDIEKEK-----HSSLDSSKFRXXXXXXXXXXXXAEPV 117
              G   + G  L+AYQ GYLDQY+  E++K     HS   + K                  
Sbjct:    77 IGGVAIAGAFLVAYQTGYLDQYLGKEQQKLSERIHSDALTEKLEEAHHLNVPSGVEDSTE 136

Query:   118 VFSHSDEEPKTSISAVEQAMQSVEPHKDIR-QPEALSKTPVEDQPHLQDKVELTPQDQTV 176
                  + +P+ + S   + +QS     DI  QPE  S    +   ++    E TPQ+  +
Sbjct:   137 KDGKVETQPQVTHSEASEGVQS-----DIELQPE--SDLSSDRFTYISSNQEETPQETVI 189

Query:   177 AVKEKDAAENSNKSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQGTGIL--SQM 234
                E +   ++++                                  N Q + +   S+ 
Sbjct:   190 DRAEINLPISASEDSGAKPDMPSEIISEAESVKLEAVPKPGDSPIIVNAQSSSVHRESET 249

Query:   235 SAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLR---------DKIDEGI 285
              +AS KD     P      ED  E E+    + P SLL  Y+L            I E I
Sbjct:   250 ESASPKD-----PAALKTPEDGIEREV----QLPGSLLKEYNLEGSDTESTGSSSIGEQI 300

Query:   286 DKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE 345
              K TE F N  E L + Y+++DGK+VLDFL AIHAAE++QA LD + FAEE RALKEKYE
Sbjct:   301 TKETEAFPNSTEGLKDSYMTEDGKLVLDFLAAIHAAEKQQAHLDAQVFAEELRALKEKYE 360

Query:   346 KELRDSRARELMRTEEAAIXXXXXXXXXXXXXXTIKSXXXXXXXXXXXXXXXXXNEAESK 405
              ELRD RARELMR EEAAI               IK+                  EA+  
Sbjct:   361 NELRDLRARELMRIEEAAILDKELKRERTKAAAAIKAIQERMEDKLKAELEQKETEAQLA 420

Query:   406 LKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKXXXX 465
             L  A ELAKAE+ ++IA+EK AQIEKMAEA+L+I AL MAFYARSEEAR+S+  HK    
Sbjct:   421 LSKAEELAKAEMISTIAKEKAAQIEKMAEADLNIKALSMAFYARSEEARQSHSVHKLALG 480

Query:   466 XXXXXXXXSRGLPIQKEIDTLYTYLDGIEKXXXXXXXXXXXPEETRYHGTETLLQLNQKF 525
                     S+GLP+QKEIDTL TYL+G  K           PEE R +GT+T+LQLNQKF
Sbjct:   481 ALALDDTLSKGLPVQKEIDTLQTYLEGTHKDSILGLVLSSLPEEARSNGTDTVLQLNQKF 540

Query:   526 DALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQV 562
             D LKGTLRHFSLIPPGGGGIL HSLAH+AS LK  +V
Sbjct:   541 DTLKGTLRHFSLIPPGGGGILAHSLAHVASSLKFKEV 577


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      585       474    0.0010  118 3  11 23  0.46    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  239 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.73u 0.11s 44.84t   Elapsed:  00:00:02
  Total cpu time:  44.73u 0.11s 44.84t   Elapsed:  00:00:02
  Start:  Sat May 11 05:17:55 2013   End:  Sat May 11 05:17:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050194 SubName- Full=Putative uncharacterized protein; (654 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	585
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	2e-50
PLN02870	533	PLN02870, PLN02870, Probable galacturonosyltransfe	8e-05
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.001
PRK07352	174	PRK07352, PRK07352, F0F1 ATP synthase subunit B; V	0.003
PTZ00491	850	PTZ00491, PTZ00491, major vault protein; Provision	0.003
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.004

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score =  180 bits (460), Expect = 2e-50
 Identities = 98/390 (25%), Positives = 159/390 (40%), Gaps = 27/390 (6%)

Query: 192 ESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSI 251
           E       P +S   SV   S   K   ++ +  + +G+  +++ A  K    A    + 
Sbjct: 52  EEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAEATTP 111

Query: 252 IIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL-SKDGKV 310
               +    L    E               D  + +    F ++++ +    L      +
Sbjct: 112 KSIQELVEALEELLEELLKETA-------SDPVVQELVSIFNDLIDSIKEDNLKDDLESL 164

Query: 311 VLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELK 370
           +    + +    ++ AEL      E +RALKEK E+ L       L R E         K
Sbjct: 165 IASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESK--EAALEK 222

Query: 371 RERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAE--------IAASIA 422
           + R +     + L++K EEKLR ELE++    E KLKN L L   E        I   + 
Sbjct: 223 QLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVE 282

Query: 423 REKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----L 477
            E+  ++ K+AE N  +  L  A  +RSE   +++   +L L   AL+ AL  G      
Sbjct: 283 EERNGRLAKLAELNSRLKGLEKALDSRSEAEDENHKVQQLWLAVEALKSALKSGSAGSPR 342

Query: 478 PIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSL 537
           P+ KE+D L       + D ++D  L+SLP E    G  +  QL  +F+ L   LR  SL
Sbjct: 343 PLVKELDALKEL---AKDDELVDAALASLPPEASQRGILSEEQLRNRFNLLAPELRKASL 399

Query: 538 IPPGGGGILTHSLAHIASWLKVHQVSGLSI 567
           +P    G+L H L+++ S L      G + 
Sbjct: 400 LPE-NAGLLGHLLSYLFSLLLFKPKQGEAD 428

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 280 KIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRA 339
           ++D+  ++   DF  ++ E+N   +    K+   F Q +  ++ +    D + FA   RA
Sbjct: 84  RVDDS-ERLVRDFYKILNEVNTEEIPDGLKLPDSFSQLV--SDMKNNHYDAKTFAFVLRA 140

Query: 340 LKEKYEKELRDSRARELMRTEEAAI 364
           + EK+E+ELR+S+  ELM    AA 
Sbjct: 141 MMEKFERELRESKFAELMNKHFAAS 165

Length = 533

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 10/163 (6%)

Query: 322 EQRQAELDGRAFAEE---KRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAA 378
           ++R    + +  AEE   +  L++K ++E     A E  +  EAA  +   +  + KAAA
Sbjct: 108 KERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAA 167

Query: 379 TIKSLQEKM-----EEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMA 433
             K   E+      E K + E    + +AE++ K A E AKAE  A    EK A  E  A
Sbjct: 168 EAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKA--EAAA 225

Query: 434 EANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG 476
           E          A  A++++A  +  A +    A AL+D     
Sbjct: 226 EEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALDDIFGGL 268

Length = 387

>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 315 LQAIHAAEQRQAELDGRAFAEEKRAL---KEKYEKELRDSRAR-ELMRTEEAAILEKELK 370
           LQA+  AE+R  +   +A AE ++ L   +++ E+   D++AR E +R E      +++ 
Sbjct: 56  LQALKEAEERLRQA-AQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMA 114

Query: 371 RERAKAAATIKSLQEKMEEKLRMEL-EQKENEAESKLKNALELAKAE--IAASIAR 423
           R +  AAA + + QE++  +LR E  E    +AES+L   L+    +  I  SIA 
Sbjct: 115 RLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPGRLDEDAQQRLIDRSIAN 170

Length = 174

>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 19/130 (14%)

Query: 316 QAIHAAEQRQAELDGR---------AFAEE-KRALKEKYEKELR-----DSRARELMRTE 360
            A H AE  + E  GR         A AEE +  L E   +         SRA  L   E
Sbjct: 667 AARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAE 726

Query: 361 EAAI-LEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAA 419
              I  E E+++   +A A ++   E   EKLR   E +    +++  N LE+AKA+  A
Sbjct: 727 ARLIEAEAEVEQAELRAKA-LRIEAEAELEKLRKRQELELEYEQAQ--NELEIAKAKELA 783

Query: 420 SIAREKVAQI 429
            I   K  +I
Sbjct: 784 DIEATKFERI 793

Length = 850

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 23/127 (18%)

Query: 334 AEEKRALKEKYEKEL------RDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKM 387
            EE R   E+ E EL       +     L R E+    E  ++R   +     + L+E +
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERR----EDLEELI 525

Query: 388 EEKLRMELEQKENEAESKLKNALEL-----------AKAEIAASIAREKVAQIE-KMAEA 435
            E+ R  +E+K   AE   + A EL           A+AE  A  ARE+VA++  K+AE 
Sbjct: 526 AER-RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584

Query: 436 NLHINAL 442
              I +L
Sbjct: 585 KERIESL 591

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	585
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	100.0
KOG1854	657	consensus Mitochondrial inner membrane protein (mi	99.96
COG4223	422	Uncharacterized protein conserved in bacteria [Fun	98.77
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	96.86
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	96.24
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	95.96
PF12037	276	DUF3523: Domain of unknown function (DUF3523); Int	93.93
KOG1854	657	consensus Mitochondrial inner membrane protein (mi	92.64
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.33
KOG0971	1243	consensus Microtubule-associated protein dynactin	92.18
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	90.72
PF11068	131	YlqD: YlqD protein; InterPro: IPR021297 This bacte	89.57
PTZ00121	2084	MAEBL; Provisional	89.52
KOG2072	988	consensus Translation initiation factor 3, subunit	89.35
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.14
PRK00409	782	recombination and DNA strand exchange inhibitor pr	88.16
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	88.15
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	88.11
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	87.53
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	87.26
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	87.21
PRK06568	154	F0F1 ATP synthase subunit B; Validated	86.91
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	86.88
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	85.78
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	85.26
PRK12704	520	phosphodiesterase; Provisional	84.1
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	83.18
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	82.55
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	82.37
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	82.3
CHL00019	184	atpF ATP synthase CF0 B subunit	82.14
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	82.09
KOG0933	1174	consensus Structural maintenance of chromosome pro	81.68
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	81.51
PRK12705	508	hypothetical protein; Provisional	81.37
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	80.99
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	80.41
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	80.41
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	80.36

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=100.00  E-value=1.2e-49  Score=428.47  Aligned_cols=305  Identities=30%  Similarity=0.398  Sum_probs=264.3

Q ss_pred             cchhhhhhccccccccCCCcchhhhhhhHhhhhcccc--cCCCchHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 007907          268 PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL--SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE  345 (585)
Q Consensus       268 ~~sl~~~y~l~~~~~~~~~~~~e~~~~~~e~~~~~~~--~~dgk~~~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfE  345 (585)
                      -+.+++.|+..+..+.....+..-.-+.+..++++.+  .+++.++.++...|+...++.++++........+.|..+++
T Consensus       208 ~~~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~  287 (582)
T PF09731_consen  208 LPKIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE  287 (582)
T ss_pred             hhhhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788889988776665552222222255677888888  88999999999999999999999999999888888988888


Q ss_pred             HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q 007907          346 KELRDSRAREL-----MRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNA--------LEL  412 (585)
Q Consensus       346 keLk~~ra~El-----~~aee~a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkql--------eE~  412 (585)
                      ..++..+....     .+.++...|+.||++++.++       ++.|+++|+.+|++..+.+++++++.        ++.
T Consensus       288 e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l-------~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~  360 (582)
T PF09731_consen  288 ELLSKLREELEQELEEKRAELEEELREEFEREREEL-------EEKYEEELRQELKRQEEAHEEHLKNELREQAIELQRE  360 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            75555333333     33455578888888888776       88899999999999999999988653        333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHH
Q 007907          413 AKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----LPIQKEIDTLY  487 (585)
Q Consensus       413 aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg-----~PL~~EL~aLk  487 (585)
                      +..+|+++|++||++|+++|++|..+|++||+++.+|+...+.++++|+||+||.+|+++|.+|     .||.+||.+|+
T Consensus       361 ~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~  440 (582)
T PF09731_consen  361 FEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALK  440 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999999999999999999999998     99999999999


Q ss_pred             HhhcCCCCchHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHhhcccccCC---C
Q 007907          488 TYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVS---G  564 (585)
Q Consensus       488 e~A~g~~~D~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHalS~v~S~LlFk~~~---p  564 (585)
                      .++.+   |+||++||++||+.+.++||+|+.+|++||++|++++|++||||++||||++|++||++|+|+|++.+   .
T Consensus       441 ~~~~~---d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~~~~~~~~~~  517 (582)
T PF09731_consen  441 ELAPD---DELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLLFRPKGGEVD  517 (582)
T ss_pred             HhCCC---ChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheeeeecCCCCCC
Confidence            99876   99999999999999999999999999999999999999999998888999999999999999999555   4


Q ss_pred             ccHHHHHHhhhhcceeeE
Q 007907          565 LSIIVALQLICHYQYFFT  582 (585)
Q Consensus       565 is~~~~~~~~~~~~y~~~  582 (585)
                      .+|+|+-+||+|++|||.
T Consensus       518 ~~~~d~~~ilarae~~l~  535 (582)
T PF09731_consen  518 PEGDDVESILARAEYYLE  535 (582)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            599999999999999974

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=3.3e-27  Score=256.55  Aligned_cols=226  Identities=21%  Similarity=0.350  Sum_probs=188.4

Q ss_pred             HHHHhhhHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q 007907          352 RARELMRTEEA----AILEKELKRERAKAAA----TIKSLQEKMEEKLRMELEQKENEAESKLKNALEL--------AKA  415 (585)
Q Consensus       352 ra~El~~aee~----a~lreELEkEraklAa----alKalee~leeKLr~ELer~~eE~eqkLkqleE~--------aKa  415 (585)
                      +++|.....+.    +++..|++.++.+++.    .+......++.-+++++.+....|-.+|+++.++        ++.
T Consensus       347 ~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~~e~~~  426 (657)
T KOG1854|consen  347 RAIEKQRLQDSRALRAQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLTIEFKQ  426 (657)
T ss_pred             HHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            55666444433    4455566666665533    2333445577788888888888888888754433        256


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHh
Q 007907          416 EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG------LPIQKEIDTLYTY  489 (585)
Q Consensus       416 EI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg------~PL~~EL~aLke~  489 (585)
                      ++.++|.+||+-|..+++.+.++|++|+.++..+......+...|+||++|.+|++.+..|      .||+..+.+|+..
T Consensus       427 ~~~e~~l~ernl~~~qvg~aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~s~~~g~~e~r~~pLg~~vn~~k~~  506 (657)
T KOG1854|consen  427 KLEEAVLQERNLHSSQVGKALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKDSLNKGHYEMRRHPLGKHVNALKEV  506 (657)
T ss_pred             HHHHHHHHHhcchHhHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccCchhHHHHHHhcc
Confidence            7999999999999999999999999999999999999999999999999999999999865      7999999999888


Q ss_pred             hcCCCCchHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHhhcccc---cCCCc-
Q 007907          490 LDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVH---QVSGL-  565 (585)
Q Consensus       490 A~g~~~D~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHalS~v~S~LlFk---~~~pi-  565 (585)
                      +.+   |+||.+++.+||+++..+||||+++|++||+.|++++||+||||++| |+++|.+..|+|.|+|.   ..+|. 
T Consensus       507 ~~~---delv~a~~~~ipk~~~~rgiysee~L~~RF~~l~ki~rr~a~l~e~g-g~lg~yf~sl~Slfl~~~~q~g~~~~  582 (657)
T KOG1854|consen  507 TKD---DELVAAALDSIPKEADTRGIYSEEDLRNRFNTLSKIARRTALLPEEG-GFLGQYFLSLQSLFLLSPQQLGNPVF  582 (657)
T ss_pred             CCc---HHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHHHhhhheeecHhhcCCCcc
Confidence            866   99999999999999999999999999999999999999999999995 66665554499999998   44455 


Q ss_pred             ---cHHHHHHhhhhcceee
Q 007907          566 ---SIIVALQLICHYQYFF  581 (585)
Q Consensus       566 ---s~~~~~~~~~~~~y~~  581 (585)
                         .+.|.-.+|.||.||+
T Consensus       583 ~~p~~~d~~~iLsrA~~~~  601 (657)
T KOG1854|consen  583 LDPNITDTYKILSRARYHL  601 (657)
T ss_pred             CCcccccHHHHHHHHHHHH
Confidence               6889999999999986

>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.77  E-value=5.6e-08  Score=101.85  Aligned_cols=148  Identities=24%  Similarity=0.319  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCCCCchH
Q 007907          419 ASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSV  498 (585)
Q Consensus       419 eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~A~g~~~D~L  498 (585)
                      ..+-.||...++...+|+++|.+||..+..-......     .+.+++.+|+.++.+|.||..||..|..++-+   ||=
T Consensus       223 salp~ersta~Aa~ael~gRiaalEqs~ne~ad~iea-----A~aiaatalKtAidrggPF~aELdtL~~VaP~---dP~  294 (422)
T COG4223         223 SALPAERSTALAAVAELNGRIAALEQSLNEPADDIEA-----ALAIAATALKTAIDRGGPFLAELDTLESVAPG---DPA  294 (422)
T ss_pred             hccchhhhhHHHHHHHHhhhHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHhcCCCchHHHhhHhhhCCC---Chh
Confidence            3455668888889999999999999887655543322     33679999999999999999999999999987   765


Q ss_pred             HHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHhhcccccCCCccHHHHHHhhhhcc
Q 007907          499 LDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQ  578 (585)
Q Consensus       499 V~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHalS~v~S~LlFk~~~pis~~~~~~~~~~~~  578 (585)
                      |.    +|-+ ....||+|..+|..+|..|.+..--++-=|+-++|||..+++..+|.+.+++.+-+.|.-+--+|+|.|
T Consensus       295 l~----~L~~-~A~tGvPTRaeL~~qF~~~AnamvsA~~~pd~nagl~~rL~~Sa~slVsVRpVGsveG~t~~a~iARmE  369 (422)
T COG4223         295 LA----ALRP-YAATGVPTRAELATQFGAVANAMVSASNNPDPNAGLFDRLRSSASSLVSVRPVGSVEGSTPDAMIARME  369 (422)
T ss_pred             hH----HhhH-HHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcceeeeeccccCCCCcchHHHHHH
Confidence            54    4433 456999999999999999999888888888877999999999999999999999999999999999987


Q ss_pred             e
Q 007907          579 Y  579 (585)
Q Consensus       579 y  579 (585)
                      -
T Consensus       370 a  370 (422)
T COG4223         370 A  370 (422)
T ss_pred             H
Confidence            4

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=96.86  E-value=0.38  Score=53.50  Aligned_cols=74  Identities=26%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          334 AEEKRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKA-AATIKSLQEKMEEKLRMELEQKENEAESKLK  407 (585)
Q Consensus       334 ~Eelk~L~ekfEkeLk~-~ra~El~~aee~a~lreELEkErakl-AaalKalee~leeKLr~ELer~~eE~eqkLk  407 (585)
                      .+..+.+..++..+++. ..+.+..+.+++..++.++++..... ..+|+.+++.+.++|++++..+.++..+++.
T Consensus       287 ~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~  362 (582)
T PF09731_consen  287 EELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFE  362 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466666777766766 22344478888888888888886655 8899999999999999999999988877654

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=96.24  E-value=1.6  Score=44.04  Aligned_cols=75  Identities=12%  Similarity=0.099  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHH
Q 007907          415 AEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS--YFAHKLALGALALEDALSRG-----LPIQKEIDTLY  487 (585)
Q Consensus       415 aEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s--~~tQqL~lAv~AL~saL~sg-----~PL~~EL~aLk  487 (585)
                      .++.+.++.||..|..+=..+..+|+.+..-+...-+..+..  ...+.|.--+..+...-..+     .-+-.||.+|+
T Consensus       131 ~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk  210 (247)
T PF06705_consen  131 NELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALK  210 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            346777888888888888888888777777776665444333  23334433333333322221     13456666665


Q ss_pred             Hh
Q 007907          488 TY  489 (585)
Q Consensus       488 e~  489 (585)
                      ..
T Consensus       211 ~~  212 (247)
T PF06705_consen  211 NA  212 (247)
T ss_pred             HH
Confidence            53

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=95.96  E-value=2.1  Score=43.09  Aligned_cols=27  Identities=19%  Similarity=0.303  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          417 IAASIAREKVAQIEKMAEANLHINALC  443 (585)
Q Consensus       417 I~eaVe~ER~gRLaKL~EL~~~V~aLE  443 (585)
                      +..+|+.||..|-.++.++...+..+.
T Consensus       162 l~~~i~~Ek~~Re~~~~~l~~~le~~~  188 (247)
T PF06705_consen  162 LQEKIEKEKNTRESKLSELRSELEEVK  188 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555544444

>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised

Probab=93.93  E-value=9.9  Score=40.15  Aligned_cols=58  Identities=12%  Similarity=0.141  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          415 AEIAASIAREKVAQIEKMAEANLHIN-ALCMAFYARSEEARKSYFAHKLALGALALEDA  472 (585)
Q Consensus       415 aEI~eaVe~ER~gRLaKL~EL~~~V~-aLE~Al~~rse~lr~s~~tQqL~lAv~AL~sa  472 (585)
                      ..|..+...+|..-|+-|......|. ++..++.+|+......--+..|++|+-.-+..
T Consensus       199 ~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYtar~g  257 (276)
T PF12037_consen  199 EQLRLKAEEERETVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYTAREG  257 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            44667777777777777777777776 66677777777766666666666665554433

This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.

>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]

Probab=92.64  E-value=10  Score=43.96  Aligned_cols=94  Identities=11%  Similarity=0.102  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          363 AILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKN--ALELAKAEIAASIAREKVAQIEKMAEANLHIN  440 (585)
Q Consensus       363 a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkq--leE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~  440 (585)
                      ..|+.||.++..++   .+++-+.+++.++++-+.+.+|..+++.+  ++|++.  -..+|.    ..|++|..+...|.
T Consensus       388 ~~~~~el~~ql~~q---a~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl--~~~qvg----~aL~rLrgie~aL~  458 (657)
T KOG1854|consen  388 SSSKNELRNQLKRQ---AKAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNL--HSSQVG----KALSRLRGIEQALQ  458 (657)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--hHhHHH----HHHHHHHhHHHHHH
Confidence            45555555555554   45567788889999999999999999975  444442  344444    36666666666666


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH
Q 007907          441 ALCMAFYARSEEARKSYFAHKLALG  465 (585)
Q Consensus       441 aLE~Al~~rse~lr~s~~tQqL~lA  465 (585)
                      ..-.+--..+..-..=.+||+||-.
T Consensus       459 ~~~~~~~e~r~a~q~w~ac~nlk~s  483 (657)
T KOG1854|consen  459 ERVRAELEARKAKQLWLACSNLKDS  483 (657)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            5554432222222223357777643

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.33  E-value=33  Score=42.31  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=14.8

Q ss_pred             hhHhhcCCCC--HHHHHHHHHHHHhcccc
Q 007907          508 EETRYHGTET--LLQLNQKFDALKGTLRH  534 (585)
Q Consensus       508 eeA~qrGV~T--~~qL~~RF~kV~~~vRr  534 (585)
                      .+...+||.+  ..+|.++...+...+++
T Consensus       761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~  789 (1201)
T PF12128_consen  761 QELAGKGVDPERIQQLKQEIEQLEKELKR  789 (1201)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3445566665  45556666555555444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.18  E-value=24  Score=42.89  Aligned_cols=62  Identities=29%  Similarity=0.470  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 007907          362 AAILEKELKRERAKA-AATIKSLQEKMEEKLRMELEQKENEAESK-----------LKNALELAKAEIAASIAREK  425 (585)
Q Consensus       362 ~a~lreELEkErakl-AaalKalee~leeKLr~ELer~~eE~eqk-----------LkqleE~aKaEI~eaVe~ER  425 (585)
                      .+-|++|+..||++- +.++..+.++.++ |.+.|+-++.|.+.+           ++|++.++.+ +++++.+=|
T Consensus       315 maTldKEmAEERaesLQ~eve~lkEr~de-letdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r-LKdalVrLR  388 (1243)
T KOG0971|consen  315 MATLDKEMAEERAESLQQEVEALKERVDE-LETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR-LKDALVRLR  388 (1243)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH-HHHHHHHHH
Confidence            366788888888877 7777777776553 667777787777764           5677777744 555554433

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=90.72  E-value=30  Score=38.33  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 007907          329 DGRAFAEEKRALKEKYEKELRDS  351 (585)
Q Consensus       329 Da~~~~Eelk~L~ekfEkeLk~~  351 (585)
                      +|....+++..++++|++.+.++
T Consensus        43 eAe~a~~ea~~~~~~~e~~L~~A   65 (445)
T PRK13428         43 ESATAADRLAEADQAHTKAVEDA   65 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778888888888888873

>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function

Probab=89.57  E-value=5.4  Score=37.66  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          414 KAEIAASIAREKVAQIEKMAEANLHINALCMA  445 (585)
Q Consensus       414 KaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~A  445 (585)
                      ...+...+++||+.|+.+...+..+++.++.+
T Consensus        58 ~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L   89 (131)
T PF11068_consen   58 IQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34588999999999999999999999988765

; PDB: 4DCI_C.

>PTZ00121 MAEBL; Provisional

Probab=89.52  E-value=62  Score=41.47  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007907          429 IEKMAEANLHINALCMAFYARSEEARKSYFAHKL  462 (585)
Q Consensus       429 LaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL  462 (585)
                      -+.|++...+-.++..=-..+.+.++....-+++
T Consensus      1259 ear~a~~A~r~aa~k~Ee~RrAee~~k~Ee~r~a 1292 (2084)
T PTZ00121       1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKA 1292 (2084)
T ss_pred             HHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH
Confidence            3344444444444433344444444444443333

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=89.35  E-value=29  Score=41.74  Aligned_cols=70  Identities=19%  Similarity=0.290  Sum_probs=39.6

Q ss_pred             HHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 007907          318 IHAAEQRQAELDGRAFAEE----KRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA-AATIKSLQEKME  388 (585)
Q Consensus       318 ih~ae~~Qae~Da~~~~Ee----lk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl-AaalKalee~le  388 (585)
                      |.++...|.+.|...|...    +..+..++|..+++ +..=.+|...--.|.+.+..+++.. ...++..+..++
T Consensus       708 ~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~-k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~le  782 (988)
T KOG2072|consen  708 IEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKD-KKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEARLE  782 (988)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            5677788888888877633    33445666766666 2222244445555666666665555 444444444333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.14  E-value=67  Score=39.80  Aligned_cols=36  Identities=14%  Similarity=-0.022  Sum_probs=22.5

Q ss_pred             HHHHHHHHHhhcccccCCCccHHHHHHhhhhcceee
Q 007907          546 LTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFF  581 (585)
Q Consensus       546 lsHalS~v~S~LlFk~~~pis~~~~~~~~~~~~y~~  581 (585)
                      +.+..-...+.+.|-.+..+..++....+..-+-||
T Consensus       937 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~  972 (1201)
T PF12128_consen  937 LAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELL  972 (1201)
T ss_pred             hHHHHHHHHHhccccccccccchhHHHHHHHHHHHH
Confidence            333333446667777787777777766666655554

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=88.16  E-value=21  Score=42.31  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=23.5

Q ss_pred             cCCCCHHHH--HHHHH--HHHhccccccccCCCCCcHHHHHHH
Q 007907          513 HGTETLLQL--NQKFD--ALKGTLRHFSLIPPGGGGILTHSLA  551 (585)
Q Consensus       513 rGV~T~~qL--~~RF~--kV~~~vRraSLVPe~gAGvlsHalS  551 (585)
                      +|-...+.+  .++|-  -+..-.+.+-.|.--|.|+|--++-
T Consensus       710 ~G~~~eeA~~~l~~fl~~a~~~g~~~v~IIHGkGtG~Lr~~v~  752 (782)
T PRK00409        710 RGMRYEEALERLDKYLDDALLAGYGEVLIIHGKGTGKLRKGVQ  752 (782)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCChhHHHHHHH
Confidence            455544444  34553  3445677888888766687765443

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.15  E-value=20  Score=39.10  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=19.6

Q ss_pred             HHHHHHHHHH----HHHHHHhcC-CCcHHHHHHHHHhhc
Q 007907          458 FAHKLALGAL----ALEDALSRG-LPIQKEIDTLYTYLD  491 (585)
Q Consensus       458 ~tQqL~lAv~----AL~saL~sg-~PL~~EL~aLke~A~  491 (585)
                      .+-++-+||+    .|..++..| .+|..-|+.+|-++.
T Consensus       307 ~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsR  345 (365)
T KOG2391|consen  307 ECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSR  345 (365)
T ss_pred             HhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHH
Confidence            3344444555    455555554 577777777776665

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.11  E-value=54  Score=39.53  Aligned_cols=9  Identities=56%  Similarity=0.686  Sum_probs=4.2

Q ss_pred             HHhhhhhhH
Q 007907          322 EQRQAELDG  330 (585)
Q Consensus       322 e~~Qae~Da  330 (585)
                      +|=|||+|-
T Consensus       323 ~kGqaELer  331 (1118)
T KOG1029|consen  323 EKGQAELER  331 (1118)
T ss_pred             hhhhHHHHH
Confidence            344555553

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=87.53  E-value=25  Score=32.95  Aligned_cols=25  Identities=12%  Similarity=0.233  Sum_probs=16.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          328 LDGRAFAEEKRALKEKYEKELRDSR  352 (585)
Q Consensus       328 ~Da~~~~Eelk~L~ekfEkeLk~~r  352 (585)
                      .+|....++...+..+|+..++++|
T Consensus        48 ~~A~~~~~ea~~~~~e~e~~l~~Ar   72 (141)
T PRK08476         48 EKVKTNSSDVSEIEHEIETILKNAR   72 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777777777777777633

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.26  E-value=52  Score=39.64  Aligned_cols=18  Identities=44%  Similarity=0.693  Sum_probs=10.2

Q ss_pred             CCCchHhH-HHHHHHHHHH
Q 007907          306 KDGKVVLD-FLQAIHAAEQ  323 (585)
Q Consensus       306 ~dgk~~~d-~~~aih~ae~  323 (585)
                      .||||-.| ||=|.|..+.
T Consensus       242 ~DGkL~~dEfilam~liem  260 (1118)
T KOG1029|consen  242 GDGKLSADEFILAMHLIEM  260 (1118)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            46666554 6666665544

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=87.21  E-value=33  Score=33.95  Aligned_cols=21  Identities=43%  Similarity=0.813  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 007907          335 EEKRALKEKYEKELRDSRAREL  356 (585)
Q Consensus       335 Eelk~L~ekfEkeLk~~ra~El  356 (585)
                      ++..+++.+||.+++. ++.++
T Consensus        60 ee~~~~r~~~E~E~~~-~~~el   80 (201)
T PF12072_consen   60 EEAQKLRQELERELKE-RRKEL   80 (201)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHH
Confidence            4555566666666665 44444

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=86.91  E-value=19  Score=34.88  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=15.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 007907          329 DGRAFAEEKRALKEKYEKELRDS  351 (585)
Q Consensus       329 Da~~~~Eelk~L~ekfEkeLk~~  351 (585)
                      +|.-..++...+.++|+..|+++
T Consensus        46 ~Ae~~r~eA~~l~~e~e~~L~~A   68 (154)
T PRK06568         46 KAEKLKEDAALLFEQTNAQIKKL   68 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777763

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=86.88  E-value=35  Score=34.13  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=17.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          329 DGRAFAEEKRALKEKYEKELRDSRAR  354 (585)
Q Consensus       329 Da~~~~Eelk~L~ekfEkeLk~~ra~  354 (585)
                      +|....++...+..+|++.|.++|..
T Consensus        95 ~Ae~~k~eAe~~~~~ye~~L~~Ar~e  120 (204)
T PRK09174         95 QAARLKQEADAAVAAYEQELAQARAK  120 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666677788888888874443

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=85.78  E-value=41  Score=33.70  Aligned_cols=17  Identities=24%  Similarity=0.262  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007907          418 AASIAREKVAQIEKMAE  434 (585)
Q Consensus       418 ~eaVe~ER~gRLaKL~E  434 (585)
                      ...|+++|..=+..|..
T Consensus       155 e~~I~~ek~~A~~el~~  171 (204)
T PRK09174        155 EARIAAIKAKAMADVGS  171 (204)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45566666655444433

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=85.26  E-value=38  Score=40.34  Aligned_cols=40  Identities=23%  Similarity=0.184  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Q 007907          331 RAFAEEKRALKEKYEKELRDSRAREL-MRTEEAAILEKELKRE  372 (585)
Q Consensus       331 ~~~~Eelk~L~ekfEkeLk~~ra~El-~~aee~a~lreELEkE  372 (585)
                      .++.+.+.+|+.+|+.++.+  +... -..+.+.+|++||-+.
T Consensus       458 ~~L~e~IeKLk~E~d~e~S~--A~~~~gLk~kL~~Lr~E~sKa  498 (762)
T PLN03229        458 LALNEMIEKLKKEIDLEYTE--AVIAMGLQERLENLREEFSKA  498 (762)
T ss_pred             hHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHhc
Confidence            46778899999999999885  3333 4455566666666663

>PRK12704 phosphodiesterase; Provisional

Probab=84.10  E-value=83  Score=35.81  Aligned_cols=7  Identities=43%  Similarity=0.700  Sum_probs=4.1

Q ss_pred             CcHHHHH
Q 007907          543 GGILTHS  549 (585)
Q Consensus       543 AGvlsHa  549 (585)
                      .++|.|.
T Consensus       334 qn~l~Hs  340 (520)
T PRK12704        334 QNVLQHS  340 (520)
T ss_pred             CcHhHHH
Confidence            3566664

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=83.18  E-value=58  Score=39.77  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=22.2

Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCccchhhHH
Q 007907           30 RKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATV   67 (585)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~k~~~g~~~   67 (585)
                      ||+|.|-..++.+=+|-=...|.    .|.|++|-.++
T Consensus       737 Rk~~rtrt~~~n~~npvy~eepf----vF~KVvLpeLA  770 (1189)
T KOG1265|consen  737 RKEFRTRTVQGNSFNPVYEEEPF----VFRKVVLPELA  770 (1189)
T ss_pred             hhhhhhccccCCCCCcccccCCc----ccceecccchh
Confidence            46677777777776666666654    46777755544

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=82.55  E-value=60  Score=33.02  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=95.7

Q ss_pred             CCchHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          307 DGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEK  386 (585)
Q Consensus       307 dgk~~~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~  386 (585)
                      =|+||-.|=..|-.. --..+-+......++..+..+=+....+...+|-.|+.-+.+|.+    - ......+|.+++.
T Consensus        42 m~~i~~e~Ek~i~~~-i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek----~-K~vi~~~k~NEE~  115 (207)
T PF05010_consen   42 MRKIMEEYEKTIAQM-IEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK----Q-KEVIEGYKKNEET  115 (207)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----H-HHHHHHHHHhHHH
Confidence            345555554444332 122333355566677777777777777777777777766665543    1 1224567777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Q 007907          387 MEEKLRMELEQKENEAESKLKNALELAK---AEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEA-RKSYFAHKL  462 (585)
Q Consensus       387 leeKLr~ELer~~eE~eqkLkqleE~aK---aEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~l-r~s~~tQqL  462 (585)
                      |...+.+-+.+...+- +++..|+.-|.   ..-.+.+++-|..+-+.+..|+..|+-.++-+.+....+ .+++....|
T Consensus       116 Lkk~~~ey~~~l~~~e-qry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL  194 (207)
T PF05010_consen  116 LKKCIEEYEERLKKEE-QRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL  194 (207)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666666665333 33322222220   013566777777777888888888877777777666433 445567788


Q ss_pred             HHHHHHHHHHH
Q 007907          463 ALGALALEDAL  473 (585)
Q Consensus       463 ~lAv~AL~saL  473 (585)
                      +.-|+-|-+++
T Consensus       195 tkICDeLI~k~  205 (207)
T PF05010_consen  195 TKICDELISKM  205 (207)
T ss_pred             HHHHHHHHHHh
Confidence            88888777665

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=82.37  E-value=48  Score=31.81  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=18.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          327 ELDGRAFAEEKRALKEKYEKELRDSR  352 (585)
Q Consensus       327 e~Da~~~~Eelk~L~ekfEkeLk~~r  352 (585)
                      -.+|.-..++...+.++|++.+.+++
T Consensus        56 l~~Ae~~~~eA~~~~~e~e~~l~~a~   81 (173)
T PRK13460         56 INKASELRLEAEALLKDYEARLNSAK   81 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777788888888888733

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.30  E-value=58  Score=33.51  Aligned_cols=63  Identities=22%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 007907          417 IAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARK-SYFAHKLALGALALEDALSRGLPIQKEIDTLYTY  489 (585)
Q Consensus       417 I~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~-s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~  489 (585)
                      ..+.+..||..|+..|...+..++.||..+........+ -..++.+.--+          .||.++++.++.-
T Consensus        40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey----------~~Lk~~in~~R~e  103 (230)
T PF10146_consen   40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY----------KPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence            367799999999999999999999999998775543333 33444444333          3456666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=82.14  E-value=51  Score=31.95  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=15.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          329 DGRAFAEEKRALKEKYEKELRDSR  352 (585)
Q Consensus       329 Da~~~~Eelk~L~ekfEkeLk~~r  352 (585)
                      ||.-..++...+..+|++.+.+++
T Consensus        66 ~Ae~~~~eA~~~~~e~e~~L~~A~   89 (184)
T CHL00019         66 NSEERREEAIEKLEKARARLRQAE   89 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666677777777777633

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=82.09  E-value=51  Score=31.90  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=12.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 007907          329 DGRAFAEEKRALKEKYEKELRD  350 (585)
Q Consensus       329 Da~~~~Eelk~L~ekfEkeLk~  350 (585)
                      ||.-..++...+..+|+..+.+
T Consensus        69 ~Ae~~~~eA~~~l~e~e~~L~~   90 (184)
T PRK13455         69 EARALREEAQTLLASYERKQRE   90 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555556666666665

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.68  E-value=1.5e+02  Score=36.93  Aligned_cols=63  Identities=24%  Similarity=0.331  Sum_probs=40.1

Q ss_pred             hHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhcc----------ccccccCCCCC-------------cHHH------
Q 007907          497 SVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTL----------RHFSLIPPGGG-------------GILT------  547 (585)
Q Consensus       497 ~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~v----------RraSLVPe~gA-------------Gvls------  547 (585)
                      .-|.-+|+.|.+.=       .++|.-=|..|-..+          -.+.|+|++|.             |+|=      
T Consensus      1011 ~kI~ktI~~lDe~k-------~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G~iWKeSL~EL 1083 (1174)
T KOG0933|consen 1011 SKIKKTIEKLDEKK-------REELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFGGIWKESLSEL 1083 (1174)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCccccceEEEEEeCccHHHHHHHh
Confidence            34555556665442       344555555555444          35789999875             3442      


Q ss_pred             -------HHHHHHHhhcccccCCCcc
Q 007907          548 -------HSLAHIASWLKVHQVSGLS  566 (585)
Q Consensus       548 -------HalS~v~S~LlFk~~~pis  566 (585)
                             -++|.++|.|+|+|...--
T Consensus      1084 SGGQRSLVALsLIlamL~fkPAPlYI 1109 (1174)
T KOG0933|consen 1084 SGGQRSLVALSLILAMLKFKPAPLYI 1109 (1174)
T ss_pred             cCchHHHHHHHHHHHHHcCCCCceee
Confidence                   3789999999999876543

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=81.51  E-value=55  Score=31.92  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=14.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 007907          329 DGRAFAEEKRALKEKYEKELRD  350 (585)
Q Consensus       329 Da~~~~Eelk~L~ekfEkeLk~  350 (585)
                      +|....++...+..+|+..|.+
T Consensus        73 ~Ae~~~~eA~~~~~eye~~L~~   94 (181)
T PRK13454         73 AAEELKQKAVEAEKAYNKALAD   94 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666677777777765

>PRK12705 hypothetical protein; Provisional

Probab=81.37  E-value=87  Score=35.78  Aligned_cols=41  Identities=22%  Similarity=0.187  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 007907          335 EEKRALKEKYEKELRDSRAREL-MRTEEAAILEKELKRERAKA  376 (585)
Q Consensus       335 Eelk~L~ekfEkeLk~~ra~El-~~aee~a~lreELEkErakl  376 (585)
                      ++...++.+.|+++++ ++.++ ...+...+-.+.|+++...+
T Consensus        59 ~~~~~~~~~~e~e~~~-~~~~~~~~e~rl~~~e~~l~~~~~~l  100 (508)
T PRK12705         59 ELLLRERNQQRQEARR-EREELQREEERLVQKEEQLDARAEKL  100 (508)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777777776 55555 22222334344444444444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=80.99  E-value=1.7e+02  Score=37.09  Aligned_cols=75  Identities=24%  Similarity=0.259  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHhc----CCCc
Q 007907          409 ALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEA-----RKSYFAHKLALGALALEDALSR----GLPI  479 (585)
Q Consensus       409 leE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~l-----r~s~~tQqL~lAv~AL~saL~s----g~PL  479 (585)
                      .+|....++...|..||..| .++..+...+++-+..|.......     ..-+..+++...+..|..+|..    +.-+
T Consensus       697 ~~e~~~~e~~~~lseek~ar-~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~  775 (1317)
T KOG0612|consen  697 DKEAQMKEIESKLSEEKSAR-EKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSL  775 (1317)
T ss_pred             hHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34556778899999999998 567887888887777766544211     1122344555666666666652    4455


Q ss_pred             HHHHH
Q 007907          480 QKEID  484 (585)
Q Consensus       480 ~~EL~  484 (585)
                      .+||.
T Consensus       776 ~~eLs  780 (1317)
T KOG0612|consen  776 QRELK  780 (1317)
T ss_pred             HHHhh
Confidence            56655

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=80.41  E-value=1.4e+02  Score=35.96  Aligned_cols=76  Identities=20%  Similarity=0.225  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          338 RALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELA  413 (585)
Q Consensus       338 k~L~ekfEkeLk~-~ra~El~~aee~a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkqleE~a  413 (585)
                      +.|+.+..+.+.. .|+.|..+.+.-..++-|+++--......+...++..+-+||++-+|...|.+..+...+++.
T Consensus       811 qqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~L  887 (1187)
T KOG0579|consen  811 QQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERL  887 (1187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3455555555555 566666555555556666665444444556666676777888888888877777765544444

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=80.41  E-value=56  Score=31.27  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          329 DGRAFAEEKRALKEKYEKELRDSR  352 (585)
Q Consensus       329 Da~~~~Eelk~L~ekfEkeLk~~r  352 (585)
                      +|....++...+..+|++.|..++
T Consensus        52 ~Ae~~k~eAe~~~~~~e~~L~~A~   75 (167)
T PRK14475         52 EAQRLREEAQALLADVKAEREEAE   75 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777778888777633

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=80.36  E-value=56  Score=31.32  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=19.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          327 ELDGRAFAEEKRALKEKYEKELRDSR  352 (585)
Q Consensus       327 e~Da~~~~Eelk~L~ekfEkeLk~~r  352 (585)
                      -.||....++.+.+..+|++++.++|
T Consensus        46 l~~A~~~~~ea~~~~~~~~~~l~~Ar   71 (161)
T COG0711          46 LAEAERLKEEAQALLAEYEQELEEAR   71 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666677777778888888888755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	585
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	8e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 57/378 (15%), Positives = 113/378 (29%), Gaps = 118/378 (31%)

Query: 253 IEDK-----SENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKD 307
           ++D      S+ E+ +   S  ++     L   +    ++  + F+  +  +N  Y    
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--Y---- 91

Query: 308 GKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALK---EKYEKELRDSRARELMRTEEAAI 364
                 FL +    EQRQ  +  R + E++  L    + + K    SR +  ++  +A  
Sbjct: 92  -----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQAL- 144

Query: 365 LEKELKRER----------AK---AAATIKS--LQEKMEEK---LRMELEQKENEAESKL 406
              EL+  +           K   A     S  +Q KM+ K   L +   +  N  E+ L
Sbjct: 145 --LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVL 199

Query: 407 KNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGA 466
           +   +L        I     ++ +  +   L I+++        +   +     K     
Sbjct: 200 EMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSI--------QAELRRLLKSKP---- 242

Query: 467 LALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLD--------LVLSSLPEETRYHGTETL 518
                     L +          L  ++     +        L+       TR+      
Sbjct: 243 ------YENCLLV----------LLNVQNAKAWNAFNLSCKILLT------TRFKQV--- 277

Query: 519 LQLNQKFDALKGTLR-HFSLIPPGGGGILTH--SLAHIASWLKV------HQVSG----- 564
                  D L      H SL        LT     + +  +L         +V       
Sbjct: 278 ------TDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 565 LSIIVAL--QLICHYQYF 580
           LSII       +  +  +
Sbjct: 330 LSIIAESIRDGLATWDNW 347

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 70/417 (16%), Positives = 126/417 (30%), Gaps = 112/417 (26%)

Query: 82  DQYIDIEKEKHSSLDS-SKFRKDKN---------DVKDDHHVAEPVVFSHS--------D 123
           D   +I+   HS      +  K K          +V++         F+ S         
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---AFNLSCKILLTTRF 274

Query: 124 EEPKTSISAVEQAMQSVEPHKD-IRQPEALS------KTPVEDQPHLQDKVELTPQD-QT 175
           ++    +SA      S++ H   +   E  S          +D P         P+    
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSI 332

Query: 176 VAVKEKDAAENSN--KSIESREPSTSPPVSSEGSVEV-ESSESKSSKE------KDENVQ 226
           +A   +D     +  K +   + +T      E S+ V E +E +   +         ++ 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 227 GTGILSQMSAASEKDEQ----KAFPQQSIIIEDKSEN-------------ELSNSAESPA 269
            T +LS +     K +         + S++ +   E+             +L N      
Sbjct: 389 -TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 270 SLLDAYHLRDKID-EGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAI--HAAEQRQA 326
           S++D Y++    D + +     D           Y          F   I  H       
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLD----------QY----------FYSHIGHHLKNIEHP 487

Query: 327 E---------LDGRAFAEEK-RALKEKYEKELRDSRAREL--MRTEEAAILEKELKRERA 374
           E         LD R F E+K R   +        S    L  ++  +  I + + K ER 
Sbjct: 488 ERMTLFRMVFLDFR-FLEQKIR--HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER- 543

Query: 375 KAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEK 431
                I     K+EE L            SK  + L +A      +I  E   Q+++
Sbjct: 544 -LVNAILDFLPKIEENL----------ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 316  QAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAK 375
            +     E+ QAE +  A AEE R      ++EL +       R EE     ++L+ E+ K
Sbjct: 893  EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952

Query: 376  AAATIKSLQEKME--EKLRMELEQKENEAESKLKNALE--LAKAEIAASIAREKVAQIEK 431
                +  L+E++E  E  R +L+ ++  A+ K+K   +  L   +    + +E+    E+
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 432  MAEANLHINA 441
            +++   ++  
Sbjct: 1013 VSDLTTNLAE 1022

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 8/206 (3%)

Query: 256  KSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFL 315
            K + E   +      + D   + +  +  + K  +     + +L      ++ K   +  
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA-KNLT 1031

Query: 316  QAIHAAEQRQAELDGRAFAEEK-----RALKEKYEKELRDSRARELMRTEEAAILEKELK 370
            +  +  E   +EL+ R   EEK       +K K E E  D   +      + A L+ +L 
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 371  RERAKAAATIKSLQEKMEEKLRMELEQKENEAE-SKLKNALELAKAEIAASIAREKVAQI 429
            ++  +  A +  L+++  +K     + +E E+  S L+  LE  KA       ++K    
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR-NKAEKQKRDLS 1150

Query: 430  EKMAEANLHINALCMAFYARSEEARK 455
            E++      +         + E    
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRGS 1176

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 3/159 (1%)

Query: 316 QAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAK 375
           Q      +RQ  LD     + ++ L E     +            E+      ++ E + 
Sbjct: 682 QEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSV 741

Query: 376 AAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEA 435
             A +K+    +E +  +E  +K  E E     A    +   A  +A  +  + ++M EA
Sbjct: 742 LQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEA 801

Query: 436 NLHINALCMAFYARSEEARKSYFAHKLALGALALEDALS 474
              +    +   A +    +      L L +  + D  S
Sbjct: 802 ---LGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSS 837

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 18/123 (14%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 316 QAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAK 375
           +A    E ++ E + R   E ++ L +   ++ R  +    +     A+      +  A+
Sbjct: 670 EAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR--KELLELEAMSMAVESTGNAKAEAE 727

Query: 376 AAATIKSLQ-EKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAE 434
           + A    ++ E    + +++ +    E E++L+   ++ + E+  + A+ ++   +    
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787

Query: 435 ANL 437
           AN+
Sbjct: 788 ANV 790

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 1/132 (0%)

Query: 324 RQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSL 383
             + +D ++     +  ++  ++ ++ +        E AA  E +   + A+     + +
Sbjct: 634 VVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKI 693

Query: 384 QEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALC 443
            ++ E + +   E  E EA S    +   AKAE  +     ++     + +A L   AL 
Sbjct: 694 LDQSEAE-KARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALA 752

Query: 444 MAFYARSEEARK 455
           +   A  E  +K
Sbjct: 753 IETEAELERVKK 764

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 5/121 (4%)

Query: 315 LQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERA 374
           +     AE+ + EL     A           K   +SRA       E ++L+ +LK +  
Sbjct: 693 ILDQSEAEKARKELL-ELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQAL 751

Query: 375 KAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAE 434
                     E    K   E+E     A+ +L+ +     A + A   +E    +     
Sbjct: 752 AIETEA----ELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTI 807

Query: 435 A 435
            
Sbjct: 808 R 808

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 319  HAAEQRQAELDG----RAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERA 374
            H +   Q  + G      +    +A+        R    REL + +  A   +  K+   
Sbjct: 865  HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI 924

Query: 375  KAAATIKSLQEKMEEKLRM---------ELEQKENEAESKLKNALE-LAKAEIAASIARE 424
                 I  LQ K++E+ +           LE   +    KL++ +E L  +E  A  A  
Sbjct: 925  GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN 984

Query: 425  KVAQI-EKMAEANLHINAL 442
            +V  + E++A+    ++  
Sbjct: 985  RVLSLQEEIAKLRKELHQT 1003

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 22/127 (17%)

Query: 322  EQRQAELDGRAFAEEKRALK------EKYEKELRDSRARELMRTEEAAILEKELKRERAK 375
             ++   L+    + E   L+         E+E +++  R L   EE A L KEL + + +
Sbjct: 948  LEKMNNLEITY-STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 376  AAATIKSLQEKMEEKLRMELEQKENEAE----------SKLKNALELAKAEIAASIAREK 425
                 K+++E   +K + E EQ  +E +           +L   +     EI  ++ ++ 
Sbjct: 1007 ----KKTIEEWA-DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 426  VAQIEKM 432
            V + +++
Sbjct: 1062 VEETKQL 1068

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 15/90 (16%)

Query: 318 IHAAEQRQAELDGRAFAEEKRALKEKYEKEL--RDSRARELMRTEEAAILEKELK---RE 372
           I  A++   E       E  R  +E+  K L   D+ ++  M  E     +K+L+   + 
Sbjct: 74  IAQADRLTQE------PESIRKWREEQRKRLQELDAASKV-MEQEWREKAKKDLEEWNQR 126

Query: 373 RAKAAATIKSLQEKMEEKLRMELEQKENEA 402
           +++     K      ++      +Q + + 
Sbjct: 127 QSEQVEKNKINNRIADKAF---YQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	585
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	87.59
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	86.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.71
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.35
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	81.06

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=87.59  E-value=3.9  Score=38.26  Aligned_cols=30  Identities=10%  Similarity=0.016  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907          416 EIAASIAREKVAQIEKMAEANLHINALCMA  445 (585)
Q Consensus       416 EI~eaVe~ER~gRLaKL~EL~~~V~aLE~A  445 (585)
                      .|...+++||+.|+.+...+..+++.++.+
T Consensus        77 ~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L  106 (150)
T 4dci_A           77 NIQQQVAGKRSELEEQKRNLLQQQAQVREL  106 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            478899999999999999999999888764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=86.90  E-value=41  Score=37.09  Aligned_cols=16  Identities=6%  Similarity=0.366  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 007907          417 IAASIAREKVAQIEKM  432 (585)
Q Consensus       417 I~eaVe~ER~gRLaKL  432 (585)
                      |.+++++||...+...
T Consensus       531 l~~kme~~~~~~~~e~  546 (592)
T 1f5n_A          531 LTEKMENDRVQLLKEQ  546 (592)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444555555544333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.71  E-value=10  Score=40.01  Aligned_cols=22  Identities=14%  Similarity=0.052  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHH
Q 007907          436 NLHINALCMAFYARSEEARKSY  457 (585)
Q Consensus       436 ~~~V~aLE~Al~~rse~lr~s~  457 (585)
                      ..+++.|+..+.+.-...|-+|
T Consensus       571 ~~~~~~l~~~~~~~~~~~~~~~  592 (597)
T 3oja_B          571 RQKVKQLEAKKNRNPDTRRVSH  592 (597)
T ss_dssp             HHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHhcCCCccccccc
Confidence            3334444444443333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.35  E-value=68  Score=42.29  Aligned_cols=92  Identities=18%  Similarity=0.143  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-----------cHHHHHHHHH---hhc
Q 007907          427 AQIEKMAEANLHINALCMAFYARSE-EARKSYFAHKLALGALALEDALSRGLP-----------IQKEIDTLYT---YLD  491 (585)
Q Consensus       427 gRLaKL~EL~~~V~aLE~Al~~rse-~lr~s~~tQqL~lAv~AL~saL~sg~P-----------L~~EL~aLke---~A~  491 (585)
                      .--++|.++..+|..|+.-+....+ +.......+.|..-+.....+|.+..-           -...+..|+.   ..-
T Consensus      2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence            3344555566666666655554442 222223344444444444444443211           1112222221   122


Q ss_pred             CCCCchHHHHHHhcCChhHhhcCCCCHH---HHHHHHHH
Q 007907          492 GIEKDSVLDLVLSSLPEETRYHGTETLL---QLNQKFDA  527 (585)
Q Consensus       492 g~~~D~LV~aaIsSLPeeA~qrGV~T~~---qL~~RF~k  527 (585)
                      |   |-|+.|+.      +.+-|.+|..   .|.+.|..
T Consensus      2105 G---D~LLaaaf------isY~G~f~~~~R~~l~~~W~~ 2134 (3245)
T 3vkg_A         2105 G---DVVLASAF------LAYIGFFDQNFRTDLMRKWMI 2134 (3245)
T ss_dssp             H---HHHHHHHH------HHTGGGSCHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHH------HHHcCCCCHHHHHHHHHHHHH
Confidence            3   78887775      3456777754   45566653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=81.06  E-value=49  Score=39.00  Aligned_cols=7  Identities=71%  Similarity=0.738  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 007907          363 AILEKEL  369 (585)
Q Consensus       363 a~lreEL  369 (585)
                      +.+++++
T Consensus       994 ~~l~~~~ 1000 (1080)
T 2dfs_A          994 AKLRKEL 1000 (1080)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00